
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/12/Correlate_Genomic_Events.R")
> result <- main("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/12/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-tTRUE", "-iD=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/LUSC-TP/6158681/transformed.cor.cli.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/Append_Data/LUSC-TP/6154711/LUSC-TP.merged_data.txt", "-fF=", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=1", "-cQ=0.25", "-MF=ONLYSIG", "-oT=LUSC-TP", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "terrence_modification_tag"
[1] TRUE
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"         "-oT=LUSC-TP"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/Append_Data/LUSC-TP/6154711/LUSC-TP.merged_data.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/LUSC-TP/6158681/transformed.cor.cli.txt"

nPatients in clinical file=408, in cluster file=490, common to both=406
[1]  80 406
[1] "1P GAIN MUTATION ANALYSIS"
[1] 3
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
               77               329 
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
               77               329 
[1] "1Q GAIN MUTATION ANALYSIS"
[1] 3
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
              168               238 
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
              168               238 
[1] "2P GAIN MUTATION ANALYSIS"
[1] 3
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
              174               232 
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
              174               232 
[1] "2Q GAIN MUTATION ANALYSIS"
[1] 3
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
              115               291 
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
              115               291 
[1] "3P GAIN MUTATION ANALYSIS"
[1] 3
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
               88               318 
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
               88               318 
[1] "3Q GAIN MUTATION ANALYSIS"
[1] 3
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
              257               149 
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
              257               149 
[1] "4P GAIN MUTATION ANALYSIS"
[1] 3
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
               26               380 
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
               26               380 
[1] "4Q GAIN MUTATION ANALYSIS"
[1] 3
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
               18               388 
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
               18               388 
[1] "5P GAIN MUTATION ANALYSIS"
[1] 3
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
              256               150 
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
              256               150 
[1] "5Q GAIN MUTATION ANALYSIS"
[1] 3
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
               78               328 
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
               78               328 
[1] "6P GAIN MUTATION ANALYSIS"
[1] 3
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
               90               316 
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
               90               316 
[1] "6Q GAIN MUTATION ANALYSIS"
[1] 3
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
               74               332 
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
               74               332 
[1] "7P GAIN MUTATION ANALYSIS"
[1] 3
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
              197               209 
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
              197               209 
[1] "7Q GAIN MUTATION ANALYSIS"
[1] 3
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
              186               220 
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
              186               220 
[1] "8P GAIN MUTATION ANALYSIS"
[1] 3
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
              106               300 
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
              106               300 
[1] "8Q GAIN MUTATION ANALYSIS"
[1] 3
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
              207               199 
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
              207               199 
[1] "9P GAIN MUTATION ANALYSIS"
[1] 3
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
               45               361 
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
               45               361 
[1] "9Q GAIN MUTATION ANALYSIS"
[1] 3
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
               75               331 
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
               75               331 
[1] "10P GAIN MUTATION ANALYSIS"
[1] 3
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
                59                347 
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
                59                347 
[1] "10Q GAIN MUTATION ANALYSIS"
[1] 3
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                34                372 
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                34                372 
[1] "11P GAIN MUTATION ANALYSIS"
[1] 3
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                61                345 
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                61                345 
[1] "11Q GAIN MUTATION ANALYSIS"
[1] 3
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                74                332 
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                74                332 
[1] "12P GAIN MUTATION ANALYSIS"
[1] 3
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
               183                223 
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
               183                223 
[1] "12Q GAIN MUTATION ANALYSIS"
[1] 3
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
               126                280 
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
               126                280 
[1] "13Q GAIN MUTATION ANALYSIS"
[1] 3
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                31                375 
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                31                375 
[1] "14Q GAIN MUTATION ANALYSIS"
[1] 3
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
               102                304 
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
               102                304 
[1] "15Q GAIN MUTATION ANALYSIS"
[1] 3
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                88                318 
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                88                318 
[1] "16P GAIN MUTATION ANALYSIS"
[1] 3
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
                68                338 
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
                68                338 
[1] "16Q GAIN MUTATION ANALYSIS"
[1] 3
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                69                337 
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                69                337 
[1] "17P GAIN MUTATION ANALYSIS"
[1] 3
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
                53                353 
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
                53                353 
[1] "17Q GAIN MUTATION ANALYSIS"
[1] 3
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
               129                277 
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
               129                277 
[1] "18P GAIN MUTATION ANALYSIS"
[1] 3
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
               128                278 
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
               128                278 
[1] "18Q GAIN MUTATION ANALYSIS"
[1] 3
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                97                309 
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                97                309 
[1] "19P GAIN MUTATION ANALYSIS"
[1] 3
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                90                316 
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                90                316 
[1] "19Q GAIN MUTATION ANALYSIS"
[1] 3
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
               128                278 
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
               128                278 
[1] "20P GAIN MUTATION ANALYSIS"
[1] 3
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
               209                197 
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
               209                197 
[1] "20Q GAIN MUTATION ANALYSIS"
[1] 3
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
               198                208 
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
               198                208 
[1] "21Q GAIN MUTATION ANALYSIS"
[1] 3
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                46                360 
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                46                360 
[1] "22Q GAIN MUTATION ANALYSIS"
[1] 3
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
               183                223 
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
               183                223 
[1] "XQ GAIN MUTATION ANALYSIS"
[1] 3
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
               63               343 
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
               63               343 
[1] "1P LOSS MUTATION ANALYSIS"
[1] 3
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
              120               286 
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
              120               286 
[1] "1Q LOSS MUTATION ANALYSIS"
[1] 3
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
               48               358 
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
               48               358 
[1] "2P LOSS MUTATION ANALYSIS"
[1] 3
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
               15               391 
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
               15               391 
[1] "2Q LOSS MUTATION ANALYSIS"
[1] 3
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
               30               376 
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
               30               376 
[1] "3P LOSS MUTATION ANALYSIS"
[1] 3
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
              252               154 
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
              252               154 
[1] "3Q LOSS MUTATION ANALYSIS"
[1] 3
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
               61               345 
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
               61               345 
[1] "4P LOSS MUTATION ANALYSIS"
[1] 3
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
              253               153 
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
              253               153 
[1] "4Q LOSS MUTATION ANALYSIS"
[1] 3
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
              235               171 
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
              235               171 
[1] "5P LOSS MUTATION ANALYSIS"
[1] 3
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
               63               343 
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
               63               343 
[1] "5Q LOSS MUTATION ANALYSIS"
[1] 3
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
              238               168 
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
              238               168 
[1] "6P LOSS MUTATION ANALYSIS"
[1] 3
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
               91               315 
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
               91               315 
[1] "6Q LOSS MUTATION ANALYSIS"
[1] 3
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
               94               312 
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
               94               312 
[1] "7P LOSS MUTATION ANALYSIS"
[1] 3
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
               50               356 
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
               50               356 
[1] "7Q LOSS MUTATION ANALYSIS"
[1] 3
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
               45               361 
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
               45               361 
[1] "8P LOSS MUTATION ANALYSIS"
[1] 3
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
              196               210 
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
              196               210 
[1] "8Q LOSS MUTATION ANALYSIS"
[1] 3
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
               37               369 
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
               37               369 
[1] "9P LOSS MUTATION ANALYSIS"
[1] 3
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
              255               151 
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
              255               151 
[1] "9Q LOSS MUTATION ANALYSIS"
[1] 3
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
              194               212 
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
              194               212 
[1] "10P LOSS MUTATION ANALYSIS"
[1] 3
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
               175                231 
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
               175                231 
[1] "10Q LOSS MUTATION ANALYSIS"
[1] 3
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
               184                222 
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
               184                222 
[1] "11P LOSS MUTATION ANALYSIS"
[1] 3
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
               140                266 
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
               140                266 
[1] "11Q LOSS MUTATION ANALYSIS"
[1] 3
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
               116                290 
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
               116                290 
[1] "12P LOSS MUTATION ANALYSIS"
[1] 3
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
                31                375 
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
                31                375 
[1] "12Q LOSS MUTATION ANALYSIS"
[1] 3
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                38                368 
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                38                368 
[1] "13Q LOSS MUTATION ANALYSIS"
[1] 3
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
               245                161 
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
               245                161 
[1] "14Q LOSS MUTATION ANALYSIS"
[1] 3
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
               137                269 
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
               137                269 
[1] "15Q LOSS MUTATION ANALYSIS"
[1] 3
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
               107                299 
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
               107                299 
[1] "16P LOSS MUTATION ANALYSIS"
[1] 3
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
               125                281 
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
               125                281 
[1] "16Q LOSS MUTATION ANALYSIS"
[1] 3
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
               143                263 
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
               143                263 
[1] "17P LOSS MUTATION ANALYSIS"
[1] 3
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
               233                173 
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
               233                173 
[1] "17Q LOSS MUTATION ANALYSIS"
[1] 3
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
                75                331 
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
                75                331 
[1] "18P LOSS MUTATION ANALYSIS"
[1] 3
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
               108                298 
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
               108                298 
[1] "18Q LOSS MUTATION ANALYSIS"
[1] 3
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
               143                263 
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
               143                263 
[1] "19P LOSS MUTATION ANALYSIS"
[1] 3
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
               136                270 
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
               136                270 
[1] "19Q LOSS MUTATION ANALYSIS"
[1] 3
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                89                317 
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                89                317 
[1] "20P LOSS MUTATION ANALYSIS"
[1] 3
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                36                370 
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                36                370 
[1] "20Q LOSS MUTATION ANALYSIS"
[1] 3
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                40                366 
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                40                366 
[1] "21Q LOSS MUTATION ANALYSIS"
[1] 3
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
               217                189 
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
               217                189 
[1] "22Q LOSS MUTATION ANALYSIS"
[1] 3
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
                74                332 
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
                74                332 
[1] "XQ LOSS MUTATION ANALYSIS"
[1] 3
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
               87               319 
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
               87               319 
[1] "terrence_modification_tag"
[1] TRUE
[1] "data2feature, selection="
 [1] "YEARSTOBIRTH"                          
 [2] "VITALSTATUS"                           
 [3] "DAYSTODEATH"                           
 [4] "DAYSTOLASTFOLLOWUP"                    
 [5] "PRIMARYSITEOFDESEASE"                  
 [6] "NEOPLASM.DISEASESTAGE"                 
 [7] "PATHOLOGY.T.STAGE"                     
 [8] "PATHOLOGY.N.STAGE"                     
 [9] "PATHOLOGY.M.STAGE"                     
[10] "DCCUPLOADDATE"                         
[11] "GENDER"                                
[12] "DATEOFINITIALPATHOLOGICDIAGNOSIS"      
[13] "DAYSTOLASTKNOWNALIVE"                  
[14] "RADIATIONTHERAPY"                      
[15] "KARNOFSKYPERFORMANCESCORE"             
[16] "HISTOLOGICALTYPE"                      
[17] "RADIATIONS.RADIATION.REGIMENINDICATION"
[18] "NUMBERPACKYEARSSMOKED"                 
[19] "YEAROFTOBACCOSMOKINGONSET"             
[20] "COMPLETENESS.OF.RESECTION"             
[21] "GLEASON_SCORE"                         
[22] "PSA_VALUE"                             
[23] "DAYS_TO_PSA"                           
[24] "BATCHNUMBER"                           

Input Data has 24 rows and 406 columns.

[1] "Batch" "24"   
[1] "Last Follow UP"
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
         370          136         2466         2417          146         1415 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
         345          396         1810          862          758           49 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
        1331          187           85         2753           92          826 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 
        3636         1426         3016         2133         1852         1058 
TCGA-21-1078 TCGA-21-1079 TCGA-21-1080 TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 
         473          964         3724          283         3644          267 
TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-21-A5DI 
         962           NA         1268         1032          329          979 
TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 
         608          223           NA          131         1953           53 
TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 TCGA-22-4593 TCGA-22-4594 
         429          822           NA          622         1067         1470 
TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4605 
         734           17         1161         1057          399           NA 
TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
         587           NA          358          965         1974         1932 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 
         444         1345           24         1651         2170           NA 
TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 
         357          573          915         1912         1713          505 
TCGA-22-A5C4 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 
          29         2524         3469         2979         1311         5286 
TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-4587 TCGA-33-4589 TCGA-33-6737 
        3149         4299          428           NA          334           NA 
TCGA-33-6738 TCGA-34-2596 TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 
         821           80         1874          958          881          999 
TCGA-34-2609 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 
         950         1528         2062         1715           NA          707 
TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-34-7107 
         365          428          941          551           NA           NA 
TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 
         120           13           12          199          246          227 
TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5011 TCGA-39-5016 
         238          207           12          103         1454         2253 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
        1360         2086           NA         2130         1848           52 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 TCGA-39-5035 TCGA-39-5036 
         740           59          832         1107          474         1084 
TCGA-39-5037 TCGA-39-5039 TCGA-39-5040 TCGA-43-2576 TCGA-43-2578 TCGA-43-2581 
        1086          544           NA         1223          684         1176 
TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-5670 TCGA-43-6143 TCGA-43-6647 
         822         1006          349          549          376          757 
TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 
         310           NA           NA          212           48         2023 
TCGA-43-8115 TCGA-43-8116 TCGA-43-8118 TCGA-43-A474 TCGA-43-A475 TCGA-43-A56V 
         202          193           NA          353          296          154 
TCGA-46-3765 TCGA-46-3766 TCGA-46-3767 TCGA-46-3768 TCGA-46-3769 TCGA-46-6025 
          NA           NA           NA           NA           NA          324 
TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 
         422           12           12          911          541           NA 
TCGA-52-7810 TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 TCGA-56-5898 
         922           NA           NA          880            3          555 
TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 
          62           31           30           13           30           44 
TCGA-56-7580 TCGA-56-7582 TCGA-56-7730 TCGA-56-7731 TCGA-56-7822 TCGA-56-8503 
          40           26            6           NA            1           41 
TCGA-56-8504 TCGA-56-8622 TCGA-56-8624 TCGA-56-8625 TCGA-56-8626 TCGA-56-8628 
         177           54           36           63           17           16 
TCGA-56-8629 TCGA-56-A49D TCGA-56-A4BW TCGA-56-A4BX TCGA-56-A4BY TCGA-56-A4ZJ 
          34           30           NA           46           30           31 
TCGA-56-A4ZK TCGA-56-A5DR TCGA-56-A5DS TCGA-58-8386 TCGA-58-8387 TCGA-58-8388 
           4           NA            8           NA           NA          378 
TCGA-58-8390 TCGA-58-8391 TCGA-58-8392 TCGA-58-8393 TCGA-58-A46J TCGA-58-A46K 
         911         2167           NA         1058         1973           NA 
TCGA-58-A46L TCGA-58-A46M TCGA-58-A46N TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 
        1113          707          539          641          109           NA 
TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 
         311           NA           NA         2820          660         2446 
TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 
        1505         2023         1259          274         1731         1531 
TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 
        1075         1475         1296           96          982          908 
TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-63-5128 TCGA-63-5131 
        1092          717          815          358           NA           NA 
TCGA-63-6202 TCGA-63-7020 TCGA-63-7021 TCGA-63-7022 TCGA-63-7023 TCGA-66-2727 
          NA           NA           NA           NA           NA           NA 
TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 
        1311           61          641           30           31           61 
TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 
          28           30           30          638          761           30 
TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 TCGA-66-2770 
          61           31           61           61           NA          700 
TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 
         578           NA           61          578           NA          121 
TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 
          NA          759           59          790         1217          699 
TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 
          NA          699           NA          913           NA         1645 
TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 TCGA-68-7757 TCGA-68-8250 
         122         1492           83          202          211          244 
TCGA-68-8251 TCGA-70-6722 TCGA-70-6723 TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 
          95           NA           NA           NA           NA           NA 
TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 
          NA           NA         2736           NA           15         1285 
TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 TCGA-77-8007 
          NA           NA           NA           NA          479           NA 
TCGA-77-8008 TCGA-77-8009 TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 TCGA-77-8133 
          NA         1641           NA         2522           NA           NA 
TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 TCGA-77-8143 TCGA-77-8144 
          NA           NA         3166           NA           NA          833 
TCGA-77-8145 TCGA-77-8148 TCGA-77-8150 TCGA-77-8153 TCGA-77-8154 TCGA-77-8156 
          NA          293           NA         1683         1092           10 
TCGA-77-A5FZ TCGA-77-A5G3 TCGA-77-A5GB TCGA-77-A5GH TCGA-79-5596 TCGA-85-6175 
          NA         3576           NA          713           NA           NA 
TCGA-85-6560 TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 TCGA-85-7697 TCGA-85-7698 
          11           24           34           18           10           49 
TCGA-85-7699 TCGA-85-7710 TCGA-85-7843 TCGA-85-7844 TCGA-85-7950 TCGA-85-8048 
           1           NA           35           38           60           26 
TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 TCGA-85-8276 
          60           16          510          428           36           13 
TCGA-85-8277 TCGA-85-8287 TCGA-85-8288 TCGA-85-8350 TCGA-85-8351 TCGA-85-8352 
          11           44           54           60           55           67 
TCGA-85-8353 TCGA-85-8354 TCGA-85-8355 TCGA-85-8479 TCGA-85-8481 TCGA-85-8580 
          54           61           20           22           20          444 
TCGA-85-8582 TCGA-85-8584 TCGA-85-8664 TCGA-85-8666 TCGA-85-A4CL TCGA-85-A4CN 
         423           NA            3          474           14           NA 
TCGA-85-A4JB TCGA-85-A4JC TCGA-85-A4PA TCGA-85-A4QQ TCGA-85-A4QR TCGA-85-A50M 
          NA           NA           NA           NA           25           19 
TCGA-85-A50Z TCGA-85-A510 TCGA-85-A511 TCGA-85-A512 TCGA-85-A513 TCGA-85-A53L 
          NA           NA           NA           NA           24           13 
TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 TCGA-90-7769 TCGA-90-7964 TCGA-90-A4ED 
         757          289           89          358          428          244 
TCGA-90-A4EE TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 
         331           82          106          122          160           69 
TCGA-94-7033 TCGA-94-7557 TCGA-94-7943 TCGA-96-7544 TCGA-96-7545 TCGA-96-8169 
          87           NA          356         1213         1343          188 
TCGA-96-8170 TCGA-96-A4JK TCGA-96-A4JL TCGA-98-7454 TCGA-98-8020 TCGA-98-8021 
         210          273          183          256           NA          413 
TCGA-98-8022 TCGA-98-8023 TCGA-J1-A4AH TCGA-L3-A4E7 TCGA-L3-A524 TCGA-LA-A446 
         223          308          222           35          449           36 
TCGA-MF-A522 TCGA-NC-A5HE TCGA-NC-A5HG TCGA-NC-A5HI 
          92         1722         1547         1135 
Variable 1:'AGE':	nDistinctValues=45,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 3:'DAYSTODEATH':	nDistinctValues=136,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'DAYSTOLASTFOLLOWUP':	nDistinctValues=256,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 5:'PRIMARY.SITE.OF.DISEASE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 6:'NEOPLASM.DISEASESTAGE':	nDistinctValues=9,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'PATHOLOGY.T.STAGE':	nDistinctValues=8,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'PATHOLOGY.N.STAGE':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'PATHOLOGY.M.STAGE':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'DCCUPLOADDAY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 11:'GENDER':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'DAYOFINITIALPATHOLOGICDIAGNOSIS':	nDistinctValues=19,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 13:'DAYSTOLASTKNOWNALIVE':	nDistinctValues=131,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 14:'RADIATION.THERAPY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 15:'KARNOFSKY.PERFORMANCE.SCORE':	nDistinctValues=8,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 16:'HISTOLOGICAL.TYPE':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 17:'RADIATIONS.RADIATION.REGIMENINDICATION':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 18:'NUMBERPACKYEARSSMOKED':	nDistinctValues=94,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 19:'YEAROFTOBACCOSMOKINGONSET':	nDistinctValues=54,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 20:'COMPLETENESS.OF.RESECTION':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 21:'GLEASON_SCORE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 22:'PSA_VALUE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 23:'DAYS_TO_PSA':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 24:'BATCH.NUMBER':	nDistinctValues=29,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
 [1] "AGE"                                   
 [2] "NEOPLASM.DISEASESTAGE"                 
 [3] "PATHOLOGY.T.STAGE"                     
 [4] "PATHOLOGY.N.STAGE"                     
 [5] "PATHOLOGY.M.STAGE"                     
 [6] "GENDER"                                
 [7] "KARNOFSKY.PERFORMANCE.SCORE"           
 [8] "HISTOLOGICAL.TYPE"                     
 [9] "RADIATIONS.RADIATION.REGIMENINDICATION"
[10] "NUMBERPACKYEARSSMOKED"                 
[11] "YEAROFTOBACCOSMOKINGONSET"             
[12] "COMPLETENESS.OF.RESECTION"             
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T" "3"          
[1] "PATHOLOGY.N" "4"          
Output Data has 406 columns, 1 survival variables, and 12 non-survival variables.
AGE, nv=45, binary=FALSE, numeric=TRUE
NEOPLASM.DISEASESTAGE, nv=9, binary=FALSE, numeric=FALSE
PATHOLOGY.T.STAGE, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.T',vnm)"
vv
 T1  T2  T3  T4 
 93 250  44  19 
[1] "table(vv)"
vv
 T1  T2  T3  T4 
 93 250  44  19 
$ClinVariableName
[1] "PATHOLOGY.T.STAGE"

$Table
vv
 T1  T2  T3  T4 
 93 250  44  19 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


 T1  T2  T3  T4 
 93 250  44  19 
PATHOLOGY.N.STAGE, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.N',vnm)"
vv
 N0  N1  N2  N3 
253 109  34   5 
[1] "table(vv)"
vv
 N0  N1  N2  N3 
253 109  34   5 
$ClinVariableName
[1] "PATHOLOGY.N.STAGE"

$Table
vv
 N0  N1  N2  N3 
253 109  34   5 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


 N0  N1  N2  N3 
253 109  34   5 
PATHOLOGY.M.STAGE, nv=3, binary=FALSE, numeric=FALSE
GENDER, nv=2, binary=FALSE, numeric=FALSE
KARNOFSKY.PERFORMANCE.SCORE, nv=8, binary=FALSE, numeric=TRUE
HISTOLOGICAL.TYPE, nv=4, binary=FALSE, numeric=FALSE
RADIATIONS.RADIATION.REGIMENINDICATION, nv=2, binary=FALSE, numeric=FALSE
NUMBERPACKYEARSSMOKED, nv=94, binary=FALSE, numeric=TRUE
YEAROFTOBACCOSMOKINGONSET, nv=54, binary=FALSE, numeric=TRUE
COMPLETENESS.OF.RESECTION, nv=4, binary=FALSE, numeric=FALSE

Clustering(1) Variable = 1P GAIN MUTATION ANALYSIS
D1V1, survival
                   sevent
clus2                 0   1
  1P GAIN MUTATED    47  25
  1P GAIN WILD-TYPE 192 113
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
               72               305 
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
               25               113 
$`1P GAIN MUTATED`
TCGA-18-3414 TCGA-21-1070 TCGA-21-1081 TCGA-21-1082 TCGA-21-5787 TCGA-22-1011 
       13.02       119.54         9.30       119.80        10.82         1.74 
TCGA-22-1016 TCGA-22-5481 TCGA-22-5483 TCGA-33-4533 TCGA-33-4582 TCGA-33-6738 
       27.02        79.20        18.84       114.05       103.53        26.99 
TCGA-34-2608 TCGA-34-5231 TCGA-34-5240 TCGA-34-7107 TCGA-37-3792 TCGA-37-4130 
       32.84        50.24        12.00         1.08         0.39         8.09 
TCGA-37-4132 TCGA-37-4141 TCGA-39-5021 TCGA-39-5022 TCGA-39-5035 TCGA-39-5037 
        7.46         0.39        68.58        55.17        15.58        35.70 
TCGA-39-5040 TCGA-43-2578 TCGA-43-3920 TCGA-43-6143 TCGA-43-6770 TCGA-46-6025 
       17.06        22.49        33.07        12.36        10.19        10.65 
TCGA-52-7809 TCGA-52-7810 TCGA-56-8504 TCGA-58-A46K TCGA-58-A46N TCGA-60-2695 
        5.42        30.31         5.82        34.36        17.72        21.07 
TCGA-60-2708 TCGA-60-2719 TCGA-60-2722 TCGA-60-2723 TCGA-60-2725 TCGA-60-2726 
       80.42        42.61        29.85        35.90        26.79        11.77 
TCGA-66-2734 TCGA-66-2742 TCGA-66-2755 TCGA-66-2759 TCGA-66-2763 TCGA-66-2771 
       43.10        21.07         0.92        25.02         0.99        19.00 
TCGA-66-2782 TCGA-66-2783 TCGA-68-8251 TCGA-77-7138 TCGA-77-7140 TCGA-77-7141 
       12.00        24.95         3.12        11.18        20.78         0.49 
TCGA-77-7338 TCGA-77-8145 TCGA-77-A5GB TCGA-77-A5GH TCGA-85-6560 TCGA-85-6798 
        0.16         6.97        30.81        23.44         0.36         1.12 
TCGA-85-7699 TCGA-85-7844 TCGA-85-8072 TCGA-85-A4CL TCGA-85-A50M TCGA-90-7964 
        0.03         1.25         1.18         0.46         0.62        14.07 
TCGA-90-A4ED TCGA-92-8064 TCGA-94-7557 TCGA-96-8169 TCGA-J1-A4AH TCGA-NC-A5HG 
        8.02         5.26         0.16         6.18         7.30        50.86 

$`1P GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       11.34        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1071 
        6.15         2.79        90.51         3.02        27.16        46.88 
TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1079 
       99.16        70.13        60.89        34.78        15.55        31.69 
TCGA-21-1080 TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 TCGA-21-5786 
      122.43         8.78        31.63        88.08        41.69        33.93 
TCGA-21-A5DI TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 
       32.19        19.99         7.33        14.93         4.31        64.21 
TCGA-22-1012 TCGA-22-1017 TCGA-22-4591 TCGA-22-4593 TCGA-22-4594 TCGA-22-4595 
       14.10        48.82        20.45        35.08        48.33        24.13 
TCGA-22-4596 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 
        0.56        38.17        34.75        13.12        32.02        19.30 
TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 
        9.53        11.77        31.73        64.90        63.52        14.60 
TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 
       44.22         0.79        54.28        71.34        11.74        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-22-A5C4 TCGA-33-4532 TCGA-33-4538 
       62.86        56.32        16.60         0.95         7.63        97.94 
TCGA-33-4547 TCGA-33-4566 TCGA-33-4583 TCGA-33-4586 TCGA-33-4587 TCGA-33-4589 
       43.10       173.79       141.34        14.07        54.44        10.98 
TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 TCGA-34-2609 
       19.76         2.63        61.61        31.50        28.96        31.23 
TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5241 TCGA-34-5927 
       67.79        56.38         9.04        23.24        14.07        30.94 
TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4129 TCGA-37-4133 
       18.12         4.96         3.95         0.43         6.54         7.82 
TCGA-37-4135 TCGA-37-5819 TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 TCGA-39-5024 
        6.81         3.39        47.80        74.07        44.71        70.03 
TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 
       60.76         1.71        24.33         1.94        27.35        36.39 
TCGA-39-5036 TCGA-39-5039 TCGA-43-2576 TCGA-43-2581 TCGA-43-3394 TCGA-43-5668 
       35.64        17.88        40.21        38.66        27.02        11.47 
TCGA-43-5670 TCGA-43-6647 TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 
       18.05        24.89         5.42         3.78         6.97         1.58 
TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 TCGA-43-8118 TCGA-43-A474 TCGA-43-A475 
       66.51         6.64         6.35         2.93        11.61         9.73 
TCGA-43-A56V TCGA-46-3768 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 
        5.06         9.96        13.87         0.39         0.39        29.95 
TCGA-52-7622 TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 TCGA-56-5898 
       17.79         8.75        27.45        28.93         0.10        18.25 
TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 
        2.04         1.02         0.99         0.43         0.99         1.45 
TCGA-56-7580 TCGA-56-7582 TCGA-56-7730 TCGA-56-7822 TCGA-56-8503 TCGA-56-8622 
        1.32         0.85         0.20         0.03         1.35         1.78 
TCGA-56-8624 TCGA-56-8625 TCGA-56-8626 TCGA-56-8628 TCGA-56-8629 TCGA-56-A49D 
        1.18         2.07         0.56         0.53         1.12         0.99 
TCGA-56-A4BX TCGA-56-A4BY TCGA-56-A4ZJ TCGA-56-A4ZK TCGA-56-A5DS TCGA-58-8386 
        1.51         0.99         1.02         0.13         0.26         0.03 
TCGA-58-8387 TCGA-58-8388 TCGA-58-8390 TCGA-58-8391 TCGA-58-8392 TCGA-58-8393 
       13.25        12.43        29.95        71.24        16.47        34.78 
TCGA-58-A46J TCGA-58-A46L TCGA-58-A46M TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 
       64.87        36.59        23.24         3.58        12.23        10.22 
TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 TCGA-60-2709 TCGA-60-2710 
       96.82        37.94        92.71        21.70        49.48        66.51 
TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 
       41.39         9.01        56.91        50.33        35.34        48.49 
TCGA-60-2720 TCGA-60-2721 TCGA-60-2724 TCGA-66-2727 TCGA-66-2737 TCGA-66-2744 
        3.16        32.28        23.57        16.96         2.01         0.99 
TCGA-66-2753 TCGA-66-2754 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2765 
        1.02         2.01         0.99         0.99        20.98         2.01 
TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 TCGA-66-2770 TCGA-66-2773 
        1.02         2.01         2.01         7.07        23.01         3.02 
TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2785 TCGA-66-2786 
        2.01        19.00        12.03         3.98         1.94        25.97 
TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 TCGA-66-2792 
       40.01        22.98         4.04        22.98         5.03        30.02 
TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 
       10.06        54.08         4.01        49.05         2.73         6.64 
TCGA-68-7757 TCGA-68-8250 TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 
        6.94         8.02        29.56        73.08        75.09        23.28 
TCGA-77-7139 TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 TCGA-77-7463 TCGA-77-7465 
       89.95        42.25        70.09       106.95        46.78        15.75 
TCGA-77-8007 TCGA-77-8008 TCGA-77-8009 TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 
        6.51        86.76        53.95        37.81        82.92        12.59 
TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 TCGA-77-8143 
       53.92        39.09        17.69       104.09        11.54        26.40 
TCGA-77-8144 TCGA-77-8148 TCGA-77-8150 TCGA-77-8153 TCGA-77-8154 TCGA-77-8156 
       27.39         9.63        54.41        55.33        35.90         0.33 
TCGA-77-A5FZ TCGA-77-A5G3 TCGA-85-6561 TCGA-85-7696 TCGA-85-7697 TCGA-85-7698 
      126.18       117.57         0.79         0.59         0.33         1.61 
TCGA-85-7843 TCGA-85-7950 TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 
        1.15         1.97         0.85         1.97         0.53        16.77 
TCGA-85-8071 TCGA-85-8276 TCGA-85-8277 TCGA-85-8287 TCGA-85-8288 TCGA-85-8350 
       14.07         0.43         0.36         1.45         1.78         1.97 
TCGA-85-8351 TCGA-85-8352 TCGA-85-8353 TCGA-85-8354 TCGA-85-8355 TCGA-85-8479 
        1.81         2.20         1.78         2.01         0.66         0.72 
TCGA-85-8481 TCGA-85-8580 TCGA-85-8582 TCGA-85-8664 TCGA-85-8666 TCGA-85-A4QR 
        0.66        14.60        13.91         0.10        15.58         0.82 
TCGA-85-A513 TCGA-85-A53L TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 TCGA-90-7769 
        0.79         0.43        24.89         9.50         2.93        11.77 
TCGA-90-A4EE TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 TCGA-92-8065 TCGA-94-7033 
       10.88         2.70         3.48         4.01         2.27         2.86 
TCGA-94-7943 TCGA-96-7544 TCGA-96-7545 TCGA-96-8170 TCGA-96-A4JK TCGA-96-A4JL 
       11.70        39.88        44.15         6.90         8.98         6.02 
TCGA-98-7454 TCGA-98-8020 TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 TCGA-L3-A4E7 
        8.42         2.73        13.58         7.33        10.13         1.15 
TCGA-L3-A524 TCGA-LA-A446 TCGA-MF-A522 TCGA-NC-A5HE TCGA-NC-A5HI 
       14.76         1.18         3.02        56.61        37.32 

  1P GAIN MUTATED 1P GAIN WILD-TYPE 
             0.03              0.03 
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
           119.80            173.79 
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
           13.545            13.580 
[1] "0.0 - 119.8 (13.5)" "0.0 - 173.8 (13.6)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56V        TCGA-46-3768        TCGA-46-6025 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-5898 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-56-7730        TCGA-56-7822        TCGA-56-8503        TCGA-56-8504 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-56-8622        TCGA-56-8624        TCGA-56-8625        TCGA-56-8626 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-56-A4BY        TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-58-8386        TCGA-58-8387        TCGA-58-8388        TCGA-58-8390 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-58-8391        TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-58-A46K        TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-60-2695        TCGA-60-2696        TCGA-60-2697        TCGA-60-2698 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-60-2703        TCGA-60-2704        TCGA-60-2706        TCGA-60-2707 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-60-2708        TCGA-60-2709        TCGA-60-2710        TCGA-60-2711 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-60-2712        TCGA-60-2713        TCGA-60-2714        TCGA-60-2715 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-60-2716        TCGA-60-2719        TCGA-60-2720        TCGA-60-2721 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-60-2722        TCGA-60-2723        TCGA-60-2724        TCGA-60-2725 
  "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-60-2726        TCGA-66-2727        TCGA-66-2734        TCGA-66-2737 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2753        TCGA-66-2754 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-66-2755        TCGA-66-2756        TCGA-66-2757        TCGA-66-2758 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-66-2759        TCGA-66-2763        TCGA-66-2765        TCGA-66-2766 
  "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-66-2767        TCGA-66-2768        TCGA-66-2769        TCGA-66-2770 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-66-2771        TCGA-66-2773        TCGA-66-2777        TCGA-66-2778 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-66-2780        TCGA-66-2781        TCGA-66-2782        TCGA-66-2783 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-66-2785        TCGA-66-2786        TCGA-66-2787        TCGA-66-2788 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-66-2789        TCGA-66-2790        TCGA-66-2791        TCGA-66-2792 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-66-2793        TCGA-66-2794        TCGA-66-2795        TCGA-66-2800 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-68-7755        TCGA-68-7756        TCGA-68-7757        TCGA-68-8250 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-68-8251        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8007 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-77-8008        TCGA-77-8009        TCGA-77-8128        TCGA-77-8130 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-77-8131        TCGA-77-8133        TCGA-77-8136        TCGA-77-8138 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8140        TCGA-77-8143        TCGA-77-8144 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-77-8145        TCGA-77-8148        TCGA-77-8150        TCGA-77-8153 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ        TCGA-77-A5G3 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6560        TCGA-85-6561 
  "1P GAIN MUTATED"   "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-7950 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-85-8048        TCGA-85-8049        TCGA-85-8052        TCGA-85-8070 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-85-8071        TCGA-85-8072        TCGA-85-8276        TCGA-85-8277 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-85-8287        TCGA-85-8288        TCGA-85-8350        TCGA-85-8351 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-85-8352        TCGA-85-8353        TCGA-85-8354        TCGA-85-8355 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-85-8479        TCGA-85-8481        TCGA-85-8580        TCGA-85-8582 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-85-8664        TCGA-85-8666        TCGA-85-A4CL        TCGA-85-A4QR 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-85-A50M        TCGA-85-A513        TCGA-85-A53L        TCGA-90-6837 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-90-A4ED        TCGA-90-A4EE        TCGA-92-7340        TCGA-92-7341 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-92-8063        TCGA-92-8064        TCGA-92-8065        TCGA-94-7033 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-94-7557        TCGA-94-7943        TCGA-96-7544        TCGA-96-7545 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-96-8169        TCGA-96-8170        TCGA-96-A4JK        TCGA-96-A4JL 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-NC-A5HI 
"1P GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56V        TCGA-46-3768        TCGA-46-6025 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-5898 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-56-7730        TCGA-56-7822        TCGA-56-8503        TCGA-56-8504 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-56-8622        TCGA-56-8624        TCGA-56-8625        TCGA-56-8626 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-56-A4BY        TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-58-8386        TCGA-58-8387        TCGA-58-8388        TCGA-58-8390 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-58-8391        TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-58-A46K        TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-60-2695        TCGA-60-2696        TCGA-60-2697        TCGA-60-2698 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-60-2703        TCGA-60-2704        TCGA-60-2706        TCGA-60-2707 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-60-2708        TCGA-60-2709        TCGA-60-2710        TCGA-60-2711 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-60-2712        TCGA-60-2713        TCGA-60-2714        TCGA-60-2715 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-60-2716        TCGA-60-2719        TCGA-60-2720        TCGA-60-2721 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-60-2722        TCGA-60-2723        TCGA-60-2724        TCGA-60-2725 
  "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-60-2726        TCGA-66-2727        TCGA-66-2734        TCGA-66-2737 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2753        TCGA-66-2754 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-66-2755        TCGA-66-2756        TCGA-66-2757        TCGA-66-2758 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-66-2759        TCGA-66-2763        TCGA-66-2765        TCGA-66-2766 
  "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-66-2767        TCGA-66-2768        TCGA-66-2769        TCGA-66-2770 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-66-2771        TCGA-66-2773        TCGA-66-2777        TCGA-66-2778 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-66-2780        TCGA-66-2781        TCGA-66-2782        TCGA-66-2783 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-66-2785        TCGA-66-2786        TCGA-66-2787        TCGA-66-2788 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-66-2789        TCGA-66-2790        TCGA-66-2791        TCGA-66-2792 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-66-2793        TCGA-66-2794        TCGA-66-2795        TCGA-66-2800 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-68-7755        TCGA-68-7756        TCGA-68-7757        TCGA-68-8250 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-68-8251        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8007 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-77-8008        TCGA-77-8009        TCGA-77-8128        TCGA-77-8130 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-77-8131        TCGA-77-8133        TCGA-77-8136        TCGA-77-8138 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8140        TCGA-77-8143        TCGA-77-8144 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-77-8145        TCGA-77-8148        TCGA-77-8150        TCGA-77-8153 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ        TCGA-77-A5G3 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6560        TCGA-85-6561 
  "1P GAIN MUTATED"   "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-7950 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-85-8048        TCGA-85-8049        TCGA-85-8052        TCGA-85-8070 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-85-8071        TCGA-85-8072        TCGA-85-8276        TCGA-85-8277 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-85-8287        TCGA-85-8288        TCGA-85-8350        TCGA-85-8351 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-85-8352        TCGA-85-8353        TCGA-85-8354        TCGA-85-8355 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-85-8479        TCGA-85-8481        TCGA-85-8580        TCGA-85-8582 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-85-8664        TCGA-85-8666        TCGA-85-A4CL        TCGA-85-A4QR 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-85-A50M        TCGA-85-A513        TCGA-85-A53L        TCGA-90-6837 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-90-A4ED        TCGA-90-A4EE        TCGA-92-7340        TCGA-92-7341 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-92-8063        TCGA-92-8064        TCGA-92-8065        TCGA-94-7033 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-94-7557        TCGA-94-7943        TCGA-96-7544        TCGA-96-7545 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-96-8169        TCGA-96-8170        TCGA-96-A4JK        TCGA-96-A4JL 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-NC-A5HI 
"1P GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56V        TCGA-46-3768        TCGA-46-6025 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-5898 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-56-7730        TCGA-56-7822        TCGA-56-8503        TCGA-56-8504 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-56-8622        TCGA-56-8624        TCGA-56-8625        TCGA-56-8626 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-56-A4BY        TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-58-8386        TCGA-58-8387        TCGA-58-8388        TCGA-58-8390 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-58-8391        TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-58-A46K        TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-60-2695        TCGA-60-2696        TCGA-60-2697        TCGA-60-2698 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-60-2703        TCGA-60-2704        TCGA-60-2706        TCGA-60-2707 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-60-2708        TCGA-60-2709        TCGA-60-2710        TCGA-60-2711 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-60-2712        TCGA-60-2713        TCGA-60-2714        TCGA-60-2715 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-60-2716        TCGA-60-2719        TCGA-60-2720        TCGA-60-2721 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-60-2722        TCGA-60-2723        TCGA-60-2724        TCGA-60-2725 
  "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-60-2726        TCGA-66-2727        TCGA-66-2734        TCGA-66-2737 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2753        TCGA-66-2754 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-66-2755        TCGA-66-2756        TCGA-66-2757        TCGA-66-2758 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-66-2759        TCGA-66-2763        TCGA-66-2765        TCGA-66-2766 
  "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-66-2767        TCGA-66-2768        TCGA-66-2769        TCGA-66-2770 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-66-2771        TCGA-66-2773        TCGA-66-2777        TCGA-66-2778 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-66-2780        TCGA-66-2781        TCGA-66-2782        TCGA-66-2783 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-66-2785        TCGA-66-2786        TCGA-66-2787        TCGA-66-2788 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-66-2789        TCGA-66-2790        TCGA-66-2791        TCGA-66-2792 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-66-2793        TCGA-66-2794        TCGA-66-2795        TCGA-66-2800 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-68-7755        TCGA-68-7756        TCGA-68-7757        TCGA-68-8250 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-68-8251        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8007 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-77-8008        TCGA-77-8009        TCGA-77-8128        TCGA-77-8130 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-77-8131        TCGA-77-8133        TCGA-77-8136        TCGA-77-8138 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8140        TCGA-77-8143        TCGA-77-8144 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-77-8145        TCGA-77-8148        TCGA-77-8150        TCGA-77-8153 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ        TCGA-77-A5G3 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6560        TCGA-85-6561 
  "1P GAIN MUTATED"   "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-7950 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-85-8048        TCGA-85-8049        TCGA-85-8052        TCGA-85-8070 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-85-8071        TCGA-85-8072        TCGA-85-8276        TCGA-85-8277 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-85-8287        TCGA-85-8288        TCGA-85-8350        TCGA-85-8351 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-85-8352        TCGA-85-8353        TCGA-85-8354        TCGA-85-8355 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-85-8479        TCGA-85-8481        TCGA-85-8580        TCGA-85-8582 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-85-8664        TCGA-85-8666        TCGA-85-A4CL        TCGA-85-A4QR 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-85-A50M        TCGA-85-A513        TCGA-85-A53L        TCGA-90-6837 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-90-A4ED        TCGA-90-A4EE        TCGA-92-7340        TCGA-92-7341 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-92-8063        TCGA-92-8064        TCGA-92-8065        TCGA-94-7033 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-94-7557        TCGA-94-7943        TCGA-96-7544        TCGA-96-7545 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-96-8169        TCGA-96-8170        TCGA-96-A4JK        TCGA-96-A4JL 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-NC-A5HI 
"1P GAIN WILD-TYPE" 
[1] "hr=" "1"  
D1V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  1P GAIN MUTATED         0        9       33        1         7        12
  1P GAIN WILD-TYPE       1       59      100        0        43        59
                   vv
clus                STAGE IIIA STAGE IIIB STAGE IV
  1P GAIN MUTATED            9          3        3
  1P GAIN WILD-TYPE         45         17        2
D1V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  1P GAIN MUTATED    15  54   4   4
  1P GAIN WILD-TYPE  78 196  40  15
D1V4, multiclass
    clus
vv   1P GAIN MUTATED 1P GAIN WILD-TYPE
  T1              15                78
  T2              54               196
  T3               4                40
  T4               4                15
                   vv
clus                 N0  N1  N2  N3
  1P GAIN MUTATED    51  18   6   1
  1P GAIN WILD-TYPE 202  91  28   4
D1V5, multiclass
    clus
vv   1P GAIN MUTATED 1P GAIN WILD-TYPE
  N0              51               202
  N1              18                91
  N2               6                28
  N3               1                 4
                   vv
clus                 M0  M1  MX
  1P GAIN MUTATED    67   3   7
  1P GAIN WILD-TYPE 281   2  40
D1V6, multiclass
    clus
vv   1P GAIN MUTATED 1P GAIN WILD-TYPE
  M0              67               281
  M1               3                 2
  MX               7                40
D1V7, binary
                   cls
clus                  0   1
  1P GAIN MUTATED    19  58
  1P GAIN WILD-TYPE  82 247
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1P GAIN MUTATED     19   58
  1P GAIN WILD-TYPE   82  247
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  FEMALE              19                82
  MALE                58               247
D1V8, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  1P GAIN MUTATED                                       7
  1P GAIN WILD-TYPE                                     5
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  1P GAIN MUTATED                                        0
  1P GAIN WILD-TYPE                                      6
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  1P GAIN MUTATED                                         0
  1P GAIN WILD-TYPE                                       1
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  1P GAIN MUTATED                                                            70
  1P GAIN WILD-TYPE                                                         317
D1V9, multiclass
                                                             clus
vv                                                            1P GAIN MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     7
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                    0
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              70
                                                             clus
vv                                                            1P GAIN WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       5
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                      6
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               317
D1V10, binary
                   cls
clus                  0   1
  1P GAIN MUTATED     2  75
  1P GAIN WILD-TYPE  10 319
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1P GAIN MUTATED      2   75
  1P GAIN WILD-TYPE   10  319
     clus
vv    1P GAIN MUTATED 1P GAIN WILD-TYPE
  NO                2                10
  YES              75               319
D1V11, continuous
D1V12, continuous
                   vv
clus                 R0  R1  R2  RX
  1P GAIN MUTATED    61   3   1   3
  1P GAIN WILD-TYPE 269   5   3  15
D1V13, multiclass
    clus
vv   1P GAIN MUTATED 1P GAIN WILD-TYPE
  R0              61               269
  R1               3                 5
  R2               1                 3
  RX               3                15

Clustering(2) Variable = 1Q GAIN MUTATION ANALYSIS
D2V1, survival
                   sevent
clus2                 0   1
  1Q GAIN MUTATED   103  56
  1Q GAIN WILD-TYPE 136  82
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
              159               218 
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
               56                82 
$`1Q GAIN MUTATED`
TCGA-18-3406 TCGA-18-3408 TCGA-18-3411 TCGA-18-3414 TCGA-18-3415 TCGA-18-3417 
       12.16        81.07        46.52        13.02        59.51        24.92 
TCGA-18-5592 TCGA-21-1070 TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 TCGA-21-1077 
        3.02       119.54        46.88        99.16        70.13        34.78 
TCGA-21-1081 TCGA-21-1082 TCGA-21-5784 TCGA-21-5787 TCGA-22-0940 TCGA-22-1011 
        9.30       119.80        41.69        10.82        19.99         1.74 
TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 TCGA-22-4594 TCGA-22-4596 
       14.10        27.02        48.82        20.45        48.33         0.56 
TCGA-22-4599 TCGA-22-4607 TCGA-22-5473 TCGA-22-5474 TCGA-22-5479 TCGA-22-5480 
       38.17        19.30        63.52        14.60        54.28        71.34 
TCGA-22-5481 TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 TCGA-22-A5C4 TCGA-33-4533 
       79.20        18.84        30.08        62.86         0.95       114.05 
TCGA-33-4538 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-4587 
       97.94       173.79       103.53       141.34        14.07        54.44 
TCGA-33-6738 TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5239 
       26.99         2.63        61.61        32.84        50.24        23.24 
TCGA-34-5240 TCGA-34-5928 TCGA-34-7107 TCGA-37-3783 TCGA-37-3792 TCGA-37-4132 
       12.00        18.12         1.08         3.95         0.39         7.46 
TCGA-37-4133 TCGA-37-4141 TCGA-39-5016 TCGA-39-5021 TCGA-39-5022 TCGA-39-5035 
        7.82         0.39        74.07        68.58        55.17        15.58 
TCGA-39-5037 TCGA-39-5040 TCGA-43-2578 TCGA-43-2581 TCGA-43-3920 TCGA-43-6143 
       35.70        17.06        22.49        38.66        33.07        12.36 
TCGA-43-6770 TCGA-43-7657 TCGA-43-A475 TCGA-46-6025 TCGA-51-4080 TCGA-52-7622 
       10.19         1.58         9.73        10.65         0.39        17.79 
TCGA-52-7809 TCGA-52-7810 TCGA-56-7223 TCGA-56-7582 TCGA-56-8504 TCGA-56-8622 
        5.42        30.31         0.99         0.85         5.82         1.78 
TCGA-56-A4BX TCGA-58-8388 TCGA-58-8393 TCGA-58-A46K TCGA-58-A46M TCGA-58-A46N 
        1.51        12.43        34.78        34.36        23.24        17.72 
TCGA-60-2695 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2722 TCGA-60-2723 
       21.07        10.22        21.70        80.42        29.85        35.90 
TCGA-60-2725 TCGA-60-2726 TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 TCGA-66-2755 
       26.79        11.77        43.10         2.01        21.07         0.92 
TCGA-66-2756 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2770 TCGA-66-2771 
        0.99        20.98        25.02         0.99        23.01        19.00 
TCGA-66-2773 TCGA-66-2777 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 
        3.02         2.01         3.98        12.00        24.95         1.94 
TCGA-66-2787 TCGA-68-8251 TCGA-77-6843 TCGA-77-6845 TCGA-77-7138 TCGA-77-7140 
       40.01         3.12        73.08        23.28        11.18        20.78 
TCGA-77-7141 TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 TCGA-77-8008 TCGA-77-8009 
        0.49         0.16        46.78        15.75        86.76        53.95 
TCGA-77-8145 TCGA-77-8148 TCGA-77-8156 TCGA-77-A5GB TCGA-77-A5GH TCGA-85-6560 
        6.97         9.63         0.33        30.81        23.44         0.36 
TCGA-85-6798 TCGA-85-7696 TCGA-85-7699 TCGA-85-7844 TCGA-85-8048 TCGA-85-8049 
        1.12         0.59         0.03         1.25         0.85         1.97 
TCGA-85-8052 TCGA-85-8070 TCGA-85-8072 TCGA-85-8277 TCGA-85-8351 TCGA-85-8352 
        0.53        16.77         1.18         0.36         1.81         2.20 
TCGA-85-8353 TCGA-85-8664 TCGA-85-8666 TCGA-85-A4CL TCGA-85-A50M TCGA-90-7767 
        1.78         0.10        15.58         0.46         0.62         2.93 
TCGA-90-7964 TCGA-90-A4ED TCGA-90-A4EE TCGA-92-7340 TCGA-92-7341 TCGA-92-8064 
       14.07         8.02        10.88         2.70         3.48         5.26 
TCGA-94-7557 TCGA-94-7943 TCGA-96-8169 TCGA-96-A4JL TCGA-J1-A4AH TCGA-L3-A524 
        0.16        11.70         6.18         6.02         7.30        14.76 
TCGA-MF-A522 TCGA-NC-A5HE TCGA-NC-A5HG 
        3.02        56.61        50.86 

$`1Q GAIN WILD-TYPE`
TCGA-18-3407 TCGA-18-3409 TCGA-18-3410 TCGA-18-3412 TCGA-18-3416 TCGA-18-3419 
        4.47        79.46         4.80        11.34        28.34         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5595 TCGA-21-1076 
       43.76         6.15         2.79        90.51        27.16        60.89 
TCGA-21-1078 TCGA-21-1079 TCGA-21-1080 TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 
       15.55        31.69       122.43         8.78        31.63        88.08 
TCGA-21-5786 TCGA-21-A5DI TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 
       33.93        32.19         7.33        14.93         4.31        64.21 
TCGA-22-4593 TCGA-22-4595 TCGA-22-4601 TCGA-22-4604 TCGA-22-4605 TCGA-22-4609 
       35.08        24.13        34.75        13.12        32.02         9.53 
TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5477 TCGA-22-5478 TCGA-22-5482 
       11.77        31.73        64.90        44.22         0.79        11.74 
TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4547 TCGA-33-4589 TCGA-33-6737 
       56.32        16.60         7.63        43.10        10.98        19.76 
TCGA-34-2604 TCGA-34-2605 TCGA-34-2609 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 
       31.50        28.96        31.23        67.79        56.38         9.04 
TCGA-34-5241 TCGA-34-5927 TCGA-34-5929 TCGA-37-3789 TCGA-37-4129 TCGA-37-4130 
       14.07        30.94         4.96         0.43         6.54         8.09 
TCGA-37-4135 TCGA-37-5819 TCGA-39-5011 TCGA-39-5019 TCGA-39-5024 TCGA-39-5027 
        6.81         3.39        47.80        44.71        70.03        60.76 
TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 TCGA-39-5036 
        1.71        24.33         1.94        27.35        36.39        35.64 
TCGA-39-5039 TCGA-43-2576 TCGA-43-3394 TCGA-43-5668 TCGA-43-5670 TCGA-43-6647 
       17.88        40.21        27.02        11.47        18.05        24.89 
TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 
        5.42         3.78         6.97        66.51         6.64         6.35 
TCGA-43-8118 TCGA-43-A474 TCGA-43-A56V TCGA-46-3768 TCGA-46-6026 TCGA-51-4079 
        2.93        11.61         5.06         9.96        13.87         0.39 
TCGA-51-4081 TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 TCGA-56-5898 
       29.95         8.75        27.45        28.93         0.10        18.25 
TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 TCGA-56-7579 TCGA-56-7580 
        2.04         1.02         0.99         0.43         1.45         1.32 
TCGA-56-7730 TCGA-56-7822 TCGA-56-8503 TCGA-56-8624 TCGA-56-8625 TCGA-56-8626 
        0.20         0.03         1.35         1.18         2.07         0.56 
TCGA-56-8628 TCGA-56-8629 TCGA-56-A49D TCGA-56-A4BY TCGA-56-A4ZJ TCGA-56-A4ZK 
        0.53         1.12         0.99         0.99         1.02         0.13 
TCGA-56-A5DS TCGA-58-8386 TCGA-58-8387 TCGA-58-8390 TCGA-58-8391 TCGA-58-8392 
        0.26         0.03        13.25        29.95        71.24        16.47 
TCGA-58-A46J TCGA-58-A46L TCGA-60-2696 TCGA-60-2697 TCGA-60-2703 TCGA-60-2704 
       64.87        36.59         3.58        12.23        96.82        37.94 
TCGA-60-2706 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 
       92.71        49.48        66.51        41.39         9.01        56.91 
TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 
       50.33        35.34        48.49        42.61         3.16        32.28 
TCGA-60-2724 TCGA-66-2727 TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 TCGA-66-2757 
       23.57        16.96         0.99         1.02         2.01         0.99 
TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 TCGA-66-2778 
        2.01         1.02         2.01         2.01         7.07        19.00 
TCGA-66-2780 TCGA-66-2786 TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 
       12.03        25.97        22.98         4.04        22.98         5.03 
TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 
       30.02        10.06        54.08         4.01        49.05         2.73 
TCGA-68-7756 TCGA-68-7757 TCGA-68-8250 TCGA-77-6842 TCGA-77-6844 TCGA-77-7139 
        6.64         6.94         8.02        29.56        75.09        89.95 
TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 TCGA-77-8007 TCGA-77-8128 TCGA-77-8130 
       42.25        70.09       106.95         6.51        37.81        82.92 
TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 
       12.59        53.92        39.09        17.69       104.09        11.54 
TCGA-77-8143 TCGA-77-8144 TCGA-77-8150 TCGA-77-8153 TCGA-77-8154 TCGA-77-A5FZ 
       26.40        27.39        54.41        55.33        35.90       126.18 
TCGA-77-A5G3 TCGA-85-6561 TCGA-85-7697 TCGA-85-7698 TCGA-85-7843 TCGA-85-7950 
      117.57         0.79         0.33         1.61         1.15         1.97 
TCGA-85-8071 TCGA-85-8276 TCGA-85-8287 TCGA-85-8288 TCGA-85-8350 TCGA-85-8354 
       14.07         0.43         1.45         1.78         1.97         2.01 
TCGA-85-8355 TCGA-85-8479 TCGA-85-8481 TCGA-85-8580 TCGA-85-8582 TCGA-85-A4QR 
        0.66         0.72         0.66        14.60        13.91         0.82 
TCGA-85-A513 TCGA-85-A53L TCGA-90-6837 TCGA-90-7766 TCGA-90-7769 TCGA-92-8063 
        0.79         0.43        24.89         9.50        11.77         4.01 
TCGA-92-8065 TCGA-94-7033 TCGA-96-7544 TCGA-96-7545 TCGA-96-8170 TCGA-96-A4JK 
        2.27         2.86        39.88        44.15         6.90         8.98 
TCGA-98-7454 TCGA-98-8020 TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 TCGA-L3-A4E7 
        8.42         2.73        13.58         7.33        10.13         1.15 
TCGA-LA-A446 TCGA-NC-A5HI 
        1.18        37.32 

  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
             0.03              0.03 
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
           173.79            126.18 
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
            14.76             12.13 
[1] "0.0 - 173.8 (14.8)" "0.0 - 126.2 (12.1)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56V        TCGA-46-3768        TCGA-46-6025 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-5898 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-56-7730        TCGA-56-7822        TCGA-56-8503        TCGA-56-8504 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-56-8622        TCGA-56-8624        TCGA-56-8625        TCGA-56-8626 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-56-A4BY        TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-58-8386        TCGA-58-8387        TCGA-58-8388        TCGA-58-8390 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-58-8391        TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-58-A46K        TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-60-2695        TCGA-60-2696        TCGA-60-2697        TCGA-60-2698 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-60-2703        TCGA-60-2704        TCGA-60-2706        TCGA-60-2707 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-60-2708        TCGA-60-2709        TCGA-60-2710        TCGA-60-2711 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-60-2712        TCGA-60-2713        TCGA-60-2714        TCGA-60-2715 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-60-2716        TCGA-60-2719        TCGA-60-2720        TCGA-60-2721 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-60-2722        TCGA-60-2723        TCGA-60-2724        TCGA-60-2725 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-60-2726        TCGA-66-2727        TCGA-66-2734        TCGA-66-2737 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2753        TCGA-66-2754 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-66-2755        TCGA-66-2756        TCGA-66-2757        TCGA-66-2758 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-66-2759        TCGA-66-2763        TCGA-66-2765        TCGA-66-2766 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-66-2767        TCGA-66-2768        TCGA-66-2769        TCGA-66-2770 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-66-2771        TCGA-66-2773        TCGA-66-2777        TCGA-66-2778 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-66-2780        TCGA-66-2781        TCGA-66-2782        TCGA-66-2783 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-66-2785        TCGA-66-2786        TCGA-66-2787        TCGA-66-2788 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-66-2789        TCGA-66-2790        TCGA-66-2791        TCGA-66-2792 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-66-2793        TCGA-66-2794        TCGA-66-2795        TCGA-66-2800 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-68-7755        TCGA-68-7756        TCGA-68-7757        TCGA-68-8250 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-68-8251        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8007 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-77-8008        TCGA-77-8009        TCGA-77-8128        TCGA-77-8130 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-77-8131        TCGA-77-8133        TCGA-77-8136        TCGA-77-8138 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8140        TCGA-77-8143        TCGA-77-8144 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-77-8145        TCGA-77-8148        TCGA-77-8150        TCGA-77-8153 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ        TCGA-77-A5G3 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6560        TCGA-85-6561 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-7950 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-85-8048        TCGA-85-8049        TCGA-85-8052        TCGA-85-8070 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-85-8071        TCGA-85-8072        TCGA-85-8276        TCGA-85-8277 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-85-8287        TCGA-85-8288        TCGA-85-8350        TCGA-85-8351 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-85-8352        TCGA-85-8353        TCGA-85-8354        TCGA-85-8355 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-85-8479        TCGA-85-8481        TCGA-85-8580        TCGA-85-8582 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-85-8664        TCGA-85-8666        TCGA-85-A4CL        TCGA-85-A4QR 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-85-A50M        TCGA-85-A513        TCGA-85-A53L        TCGA-90-6837 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-90-A4ED        TCGA-90-A4EE        TCGA-92-7340        TCGA-92-7341 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-92-8063        TCGA-92-8064        TCGA-92-8065        TCGA-94-7033 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-94-7557        TCGA-94-7943        TCGA-96-7544        TCGA-96-7545 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-96-8169        TCGA-96-8170        TCGA-96-A4JK        TCGA-96-A4JL 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-NC-A5HI 
"1Q GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56V        TCGA-46-3768        TCGA-46-6025 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-5898 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-56-7730        TCGA-56-7822        TCGA-56-8503        TCGA-56-8504 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-56-8622        TCGA-56-8624        TCGA-56-8625        TCGA-56-8626 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-56-A4BY        TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-58-8386        TCGA-58-8387        TCGA-58-8388        TCGA-58-8390 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-58-8391        TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-58-A46K        TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-60-2695        TCGA-60-2696        TCGA-60-2697        TCGA-60-2698 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-60-2703        TCGA-60-2704        TCGA-60-2706        TCGA-60-2707 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-60-2708        TCGA-60-2709        TCGA-60-2710        TCGA-60-2711 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-60-2712        TCGA-60-2713        TCGA-60-2714        TCGA-60-2715 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-60-2716        TCGA-60-2719        TCGA-60-2720        TCGA-60-2721 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-60-2722        TCGA-60-2723        TCGA-60-2724        TCGA-60-2725 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-60-2726        TCGA-66-2727        TCGA-66-2734        TCGA-66-2737 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2753        TCGA-66-2754 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-66-2755        TCGA-66-2756        TCGA-66-2757        TCGA-66-2758 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-66-2759        TCGA-66-2763        TCGA-66-2765        TCGA-66-2766 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-66-2767        TCGA-66-2768        TCGA-66-2769        TCGA-66-2770 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-66-2771        TCGA-66-2773        TCGA-66-2777        TCGA-66-2778 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-66-2780        TCGA-66-2781        TCGA-66-2782        TCGA-66-2783 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-66-2785        TCGA-66-2786        TCGA-66-2787        TCGA-66-2788 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-66-2789        TCGA-66-2790        TCGA-66-2791        TCGA-66-2792 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-66-2793        TCGA-66-2794        TCGA-66-2795        TCGA-66-2800 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-68-7755        TCGA-68-7756        TCGA-68-7757        TCGA-68-8250 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-68-8251        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8007 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-77-8008        TCGA-77-8009        TCGA-77-8128        TCGA-77-8130 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-77-8131        TCGA-77-8133        TCGA-77-8136        TCGA-77-8138 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8140        TCGA-77-8143        TCGA-77-8144 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-77-8145        TCGA-77-8148        TCGA-77-8150        TCGA-77-8153 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ        TCGA-77-A5G3 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6560        TCGA-85-6561 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-7950 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-85-8048        TCGA-85-8049        TCGA-85-8052        TCGA-85-8070 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-85-8071        TCGA-85-8072        TCGA-85-8276        TCGA-85-8277 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-85-8287        TCGA-85-8288        TCGA-85-8350        TCGA-85-8351 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-85-8352        TCGA-85-8353        TCGA-85-8354        TCGA-85-8355 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-85-8479        TCGA-85-8481        TCGA-85-8580        TCGA-85-8582 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-85-8664        TCGA-85-8666        TCGA-85-A4CL        TCGA-85-A4QR 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-85-A50M        TCGA-85-A513        TCGA-85-A53L        TCGA-90-6837 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-90-A4ED        TCGA-90-A4EE        TCGA-92-7340        TCGA-92-7341 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-92-8063        TCGA-92-8064        TCGA-92-8065        TCGA-94-7033 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-94-7557        TCGA-94-7943        TCGA-96-7544        TCGA-96-7545 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-96-8169        TCGA-96-8170        TCGA-96-A4JK        TCGA-96-A4JL 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-NC-A5HI 
"1Q GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56V        TCGA-46-3768        TCGA-46-6025 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-5898 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-56-7730        TCGA-56-7822        TCGA-56-8503        TCGA-56-8504 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-56-8622        TCGA-56-8624        TCGA-56-8625        TCGA-56-8626 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-56-A4BY        TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-58-8386        TCGA-58-8387        TCGA-58-8388        TCGA-58-8390 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-58-8391        TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-58-A46K        TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-60-2695        TCGA-60-2696        TCGA-60-2697        TCGA-60-2698 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-60-2703        TCGA-60-2704        TCGA-60-2706        TCGA-60-2707 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-60-2708        TCGA-60-2709        TCGA-60-2710        TCGA-60-2711 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-60-2712        TCGA-60-2713        TCGA-60-2714        TCGA-60-2715 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-60-2716        TCGA-60-2719        TCGA-60-2720        TCGA-60-2721 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-60-2722        TCGA-60-2723        TCGA-60-2724        TCGA-60-2725 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-60-2726        TCGA-66-2727        TCGA-66-2734        TCGA-66-2737 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2753        TCGA-66-2754 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-66-2755        TCGA-66-2756        TCGA-66-2757        TCGA-66-2758 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-66-2759        TCGA-66-2763        TCGA-66-2765        TCGA-66-2766 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-66-2767        TCGA-66-2768        TCGA-66-2769        TCGA-66-2770 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-66-2771        TCGA-66-2773        TCGA-66-2777        TCGA-66-2778 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-66-2780        TCGA-66-2781        TCGA-66-2782        TCGA-66-2783 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-66-2785        TCGA-66-2786        TCGA-66-2787        TCGA-66-2788 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-66-2789        TCGA-66-2790        TCGA-66-2791        TCGA-66-2792 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-66-2793        TCGA-66-2794        TCGA-66-2795        TCGA-66-2800 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-68-7755        TCGA-68-7756        TCGA-68-7757        TCGA-68-8250 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-68-8251        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8007 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-77-8008        TCGA-77-8009        TCGA-77-8128        TCGA-77-8130 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-77-8131        TCGA-77-8133        TCGA-77-8136        TCGA-77-8138 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8140        TCGA-77-8143        TCGA-77-8144 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-77-8145        TCGA-77-8148        TCGA-77-8150        TCGA-77-8153 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ        TCGA-77-A5G3 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6560        TCGA-85-6561 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-7950 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-85-8048        TCGA-85-8049        TCGA-85-8052        TCGA-85-8070 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-85-8071        TCGA-85-8072        TCGA-85-8276        TCGA-85-8277 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-85-8287        TCGA-85-8288        TCGA-85-8350        TCGA-85-8351 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-85-8352        TCGA-85-8353        TCGA-85-8354        TCGA-85-8355 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-85-8479        TCGA-85-8481        TCGA-85-8580        TCGA-85-8582 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-85-8664        TCGA-85-8666        TCGA-85-A4CL        TCGA-85-A4QR 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-85-A50M        TCGA-85-A513        TCGA-85-A53L        TCGA-90-6837 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-90-A4ED        TCGA-90-A4EE        TCGA-92-7340        TCGA-92-7341 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-92-8063        TCGA-92-8064        TCGA-92-8065        TCGA-94-7033 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-94-7557        TCGA-94-7943        TCGA-96-7544        TCGA-96-7545 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-96-8169        TCGA-96-8170        TCGA-96-A4JK        TCGA-96-A4JL 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-NC-A5HI 
"1Q GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D2V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  1Q GAIN MUTATED         0       22       66        1        17        29
  1Q GAIN WILD-TYPE       1       46       67        0        33        42
                   vv
clus                STAGE IIIA STAGE IIIB STAGE IV
  1Q GAIN MUTATED           22          7        4
  1Q GAIN WILD-TYPE         32         13        1
D2V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  1Q GAIN MUTATED    30 111  19   8
  1Q GAIN WILD-TYPE  63 139  25  11
D2V4, multiclass
    clus
vv   1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  T1              30                63
  T2             111               139
  T3              19                25
  T4               8                11
                   vv
clus                 N0  N1  N2  N3
  1Q GAIN MUTATED   106  47  12   1
  1Q GAIN WILD-TYPE 147  62  22   4
D2V5, multiclass
    clus
vv   1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  N0             106               147
  N1              47                62
  N2              12                22
  N3               1                 4
                   vv
clus                 M0  M1  MX
  1Q GAIN MUTATED   145   4  18
  1Q GAIN WILD-TYPE 203   1  29
D2V6, multiclass
    clus
vv   1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  M0             145               203
  M1               4                 1
  MX              18                29
D2V7, binary
                   cls
clus                  0   1
  1Q GAIN MUTATED    38 130
  1Q GAIN WILD-TYPE  63 175
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1Q GAIN MUTATED     38  130
  1Q GAIN WILD-TYPE   63  175
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  FEMALE              38                63
  MALE               130               175
D2V8, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  1Q GAIN MUTATED                                      10
  1Q GAIN WILD-TYPE                                     2
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  1Q GAIN MUTATED                                        0
  1Q GAIN WILD-TYPE                                      6
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  1Q GAIN MUTATED                                         1
  1Q GAIN WILD-TYPE                                       0
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  1Q GAIN MUTATED                                                           157
  1Q GAIN WILD-TYPE                                                         230
D2V9, multiclass
                                                             clus
vv                                                            1Q GAIN MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    10
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                    0
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                   1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             157
                                                             clus
vv                                                            1Q GAIN WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       2
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                      6
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                     0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               230
D2V10, binary
                   cls
clus                  0   1
  1Q GAIN MUTATED     2 166
  1Q GAIN WILD-TYPE  10 228
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1Q GAIN MUTATED      2  166
  1Q GAIN WILD-TYPE   10  228
     clus
vv    1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  NO                2                10
  YES             166               228
D2V11, continuous
D2V12, continuous
                   vv
clus                 R0  R1  R2  RX
  1Q GAIN MUTATED   141   5   1   6
  1Q GAIN WILD-TYPE 189   3   3  12
D2V13, multiclass
    clus
vv   1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  R0             141               189
  R1               5                 3
  R2               1                 3
  RX               6                12

Clustering(3) Variable = 2P GAIN MUTATION ANALYSIS
D3V1, survival
                   sevent
clus2                 0   1
  2P GAIN MUTATED   107  55
  2P GAIN WILD-TYPE 132  83
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
              162               215 
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
               55                83 
$`2P GAIN MUTATED`
TCGA-18-3409 TCGA-18-3411 TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3417 
       79.46        46.52        11.34        13.02        59.51        24.92 
TCGA-18-3419 TCGA-18-3421 TCGA-21-1072 TCGA-21-1076 TCGA-21-1079 TCGA-21-1081 
        1.61        43.76        99.16        60.89        31.69         9.30 
TCGA-21-1083 TCGA-21-5783 TCGA-21-5786 TCGA-21-A5DI TCGA-22-4591 TCGA-22-4595 
        8.78        88.08        33.93        32.19        20.45        24.13 
TCGA-22-4599 TCGA-22-4604 TCGA-22-4605 TCGA-22-5471 TCGA-22-5473 TCGA-22-5474 
       38.17        13.12        32.02        31.73        63.52        14.60 
TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 TCGA-22-5483 TCGA-22-5489 
       44.22         0.79        54.28        71.34        18.84        62.86 
TCGA-22-5491 TCGA-22-A5C4 TCGA-33-4532 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 
       56.32         0.95         7.63       173.79       103.53       141.34 
TCGA-33-6738 TCGA-34-2596 TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 TCGA-34-5231 
       26.99         2.63        61.61        31.50        28.96        50.24 
TCGA-34-5236 TCGA-34-5240 TCGA-34-5241 TCGA-34-5928 TCGA-34-7107 TCGA-37-3792 
        9.04        12.00        14.07        18.12         1.08         0.39 
TCGA-37-4130 TCGA-37-4133 TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 TCGA-39-5027 
        8.09         7.82        47.80        74.07        44.71        60.76 
TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5040 TCGA-43-2576 TCGA-43-2581 
       15.58        35.64        35.70        17.06        40.21        38.66 
TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-5670 TCGA-43-6143 TCGA-43-7658 
       27.02        33.07        11.47        18.05        12.36        66.51 
TCGA-43-8115 TCGA-46-3768 TCGA-46-6025 TCGA-51-4080 TCGA-52-7809 TCGA-52-7810 
        6.64         9.96        10.65         0.39         5.42        30.31 
TCGA-52-7811 TCGA-56-5898 TCGA-56-6546 TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 
        8.75        18.25         1.02         0.43         0.99         1.45 
TCGA-56-7582 TCGA-56-7730 TCGA-56-8504 TCGA-56-8628 TCGA-56-8629 TCGA-56-A4BX 
        0.85         0.20         5.82         0.53         1.12         1.51 
TCGA-56-A4BY TCGA-56-A5DS TCGA-58-8391 TCGA-58-8392 TCGA-58-A46K TCGA-58-A46L 
        0.99         0.26        71.24        16.47        34.36        36.59 
TCGA-58-A46M TCGA-58-A46N TCGA-60-2698 TCGA-60-2703 TCGA-60-2708 TCGA-60-2711 
       23.24        17.72        10.22        96.82        80.42        41.39 
TCGA-60-2712 TCGA-60-2719 TCGA-60-2724 TCGA-60-2726 TCGA-66-2737 TCGA-66-2758 
        9.01        42.61        23.57        11.77         2.01        20.98 
TCGA-66-2759 TCGA-66-2767 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 
       25.02         2.01        23.01        19.00         3.02         2.01 
TCGA-66-2787 TCGA-66-2789 TCGA-66-2792 TCGA-66-2793 TCGA-66-2795 TCGA-66-2800 
       40.01         4.04        30.02        10.06         4.01        49.05 
TCGA-68-7755 TCGA-68-7756 TCGA-77-6842 TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 
        2.73         6.64        29.56        23.28        11.18        89.95 
TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 TCGA-77-8009 TCGA-77-8130 
        0.49        42.25        70.09       106.95        53.95        82.92 
TCGA-77-8136 TCGA-77-8139 TCGA-77-8148 TCGA-77-8150 TCGA-77-8156 TCGA-77-A5GH 
       39.09       104.09         9.63        54.41         0.33        23.44 
TCGA-85-6560 TCGA-85-6798 TCGA-85-7696 TCGA-85-7843 TCGA-85-7844 TCGA-85-8052 
        0.36         1.12         0.59         1.15         1.25         0.53 
TCGA-85-8070 TCGA-85-8072 TCGA-85-8277 TCGA-85-8350 TCGA-85-8354 TCGA-85-8664 
       16.77         1.18         0.36         1.97         2.01         0.10 
TCGA-85-8666 TCGA-85-A4QR TCGA-85-A50M TCGA-90-7767 TCGA-90-7769 TCGA-90-7964 
       15.58         0.82         0.62         2.93        11.77        14.07 
TCGA-90-A4EE TCGA-92-7341 TCGA-94-7557 TCGA-94-7943 TCGA-96-7545 TCGA-96-8169 
       10.88         3.48         0.16        11.70        44.15         6.18 
TCGA-96-A4JK TCGA-98-7454 TCGA-J1-A4AH TCGA-L3-A524 TCGA-MF-A522 TCGA-NC-A5HG 
        8.98         8.42         7.30        14.76         3.02        50.86 

$`2P GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3416 TCGA-18-4083 
       12.16         4.47        81.07         4.80        28.34         6.15 
TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 
        2.79        90.51         3.02        27.16       119.54        46.88 
TCGA-21-1075 TCGA-21-1077 TCGA-21-1078 TCGA-21-1080 TCGA-21-1082 TCGA-21-5782 
       70.13        34.78        15.55       122.43       119.80        31.63 
TCGA-21-5784 TCGA-21-5787 TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 
       41.69        10.82        19.99         7.33        14.93         4.31 
TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 TCGA-22-4593 
       64.21         1.74        14.10        27.02        48.82        35.08 
TCGA-22-4594 TCGA-22-4596 TCGA-22-4601 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 
       48.33         0.56        34.75        19.30         9.53        11.77 
TCGA-22-5472 TCGA-22-5481 TCGA-22-5482 TCGA-22-5485 TCGA-22-5492 TCGA-33-4533 
       64.90        79.20        11.74        30.08        16.60       114.05 
TCGA-33-4538 TCGA-33-4547 TCGA-33-4586 TCGA-33-4587 TCGA-33-4589 TCGA-33-6737 
       97.94        43.10        14.07        54.44        10.98        19.76 
TCGA-34-2608 TCGA-34-2609 TCGA-34-5232 TCGA-34-5234 TCGA-34-5239 TCGA-34-5927 
       32.84        31.23        67.79        56.38        23.24        30.94 
TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4129 TCGA-37-4132 TCGA-37-4135 
        4.96         3.95         0.43         6.54         7.46         6.81 
TCGA-37-4141 TCGA-37-5819 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5028 
        0.39         3.39        68.58        55.17        70.03         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 TCGA-39-5039 TCGA-43-2578 
       24.33         1.94        27.35        36.39        17.88        22.49 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 
       24.89        10.19         5.42         3.78         6.97         1.58 
TCGA-43-8116 TCGA-43-8118 TCGA-43-A474 TCGA-43-A475 TCGA-43-A56V TCGA-46-6026 
        6.35         2.93        11.61         9.73         5.06        13.87 
TCGA-51-4079 TCGA-51-4081 TCGA-52-7622 TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 
        0.39        29.95        17.79        27.45        28.93         0.10 
TCGA-56-6545 TCGA-56-7221 TCGA-56-7580 TCGA-56-7822 TCGA-56-8503 TCGA-56-8622 
        2.04         0.99         1.32         0.03         1.35         1.78 
TCGA-56-8624 TCGA-56-8625 TCGA-56-8626 TCGA-56-A49D TCGA-56-A4ZJ TCGA-56-A4ZK 
        1.18         2.07         0.56         0.99         1.02         0.13 
TCGA-58-8386 TCGA-58-8387 TCGA-58-8388 TCGA-58-8390 TCGA-58-8393 TCGA-58-A46J 
        0.03        13.25        12.43        29.95        34.78        64.87 
TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 
       21.07         3.58        12.23        37.94        92.71        21.70 
TCGA-60-2709 TCGA-60-2710 TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 
       49.48        66.51        56.91        50.33        35.34        48.49 
TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2725 TCGA-66-2727 
        3.16        32.28        29.85        35.90        26.79        16.96 
TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 
       43.10        21.07         0.99         1.02         2.01         0.92 
TCGA-66-2756 TCGA-66-2757 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2768 
        0.99         0.99         0.99         2.01         1.02         2.01 
TCGA-66-2769 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 
        7.07        19.00        12.03         3.98        12.00        24.95 
TCGA-66-2785 TCGA-66-2786 TCGA-66-2788 TCGA-66-2790 TCGA-66-2791 TCGA-66-2794 
        1.94        25.97        22.98        22.98         5.03        54.08 
TCGA-68-7757 TCGA-68-8250 TCGA-68-8251 TCGA-77-6843 TCGA-77-6844 TCGA-77-7140 
        6.94         8.02         3.12        73.08        75.09        20.78 
TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 TCGA-77-8007 TCGA-77-8008 TCGA-77-8128 
        0.16        46.78        15.75         6.51        86.76        37.81 
TCGA-77-8131 TCGA-77-8133 TCGA-77-8138 TCGA-77-8140 TCGA-77-8143 TCGA-77-8144 
       12.59        53.92        17.69        11.54        26.40        27.39 
TCGA-77-8145 TCGA-77-8153 TCGA-77-8154 TCGA-77-A5FZ TCGA-77-A5G3 TCGA-77-A5GB 
        6.97        55.33        35.90       126.18       117.57        30.81 
TCGA-85-6561 TCGA-85-7697 TCGA-85-7698 TCGA-85-7699 TCGA-85-7950 TCGA-85-8048 
        0.79         0.33         1.61         0.03         1.97         0.85 
TCGA-85-8049 TCGA-85-8071 TCGA-85-8276 TCGA-85-8287 TCGA-85-8288 TCGA-85-8351 
        1.97        14.07         0.43         1.45         1.78         1.81 
TCGA-85-8352 TCGA-85-8353 TCGA-85-8355 TCGA-85-8479 TCGA-85-8481 TCGA-85-8580 
        2.20         1.78         0.66         0.72         0.66        14.60 
TCGA-85-8582 TCGA-85-A4CL TCGA-85-A513 TCGA-85-A53L TCGA-90-6837 TCGA-90-7766 
       13.91         0.46         0.79         0.43        24.89         9.50 
TCGA-90-A4ED TCGA-92-7340 TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 
        8.02         2.70         4.01         5.26         2.27         2.86 
TCGA-96-7544 TCGA-96-8170 TCGA-96-A4JL TCGA-98-8020 TCGA-98-8021 TCGA-98-8022 
       39.88         6.90         6.02         2.73        13.58         7.33 
TCGA-98-8023 TCGA-L3-A4E7 TCGA-LA-A446 TCGA-NC-A5HE TCGA-NC-A5HI 
       10.13         1.15         1.18        56.61        37.32 

  2P GAIN MUTATED 2P GAIN WILD-TYPE 
             0.10              0.03 
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
           173.79            126.18 
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
            15.58             12.16 
[1] "0.1 - 173.8 (15.6)" "0.0 - 126.2 (12.2)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
  "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
  "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
  "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
  "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
  "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56V        TCGA-46-3768        TCGA-46-6025 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-5898 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-56-7730        TCGA-56-7822        TCGA-56-8503        TCGA-56-8504 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-56-8622        TCGA-56-8624        TCGA-56-8625        TCGA-56-8626 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-56-A4BY        TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-58-8386        TCGA-58-8387        TCGA-58-8388        TCGA-58-8390 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-58-8391        TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-58-A46K        TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N 
  "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-60-2695        TCGA-60-2696        TCGA-60-2697        TCGA-60-2698 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-60-2703        TCGA-60-2704        TCGA-60-2706        TCGA-60-2707 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-60-2708        TCGA-60-2709        TCGA-60-2710        TCGA-60-2711 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-60-2712        TCGA-60-2713        TCGA-60-2714        TCGA-60-2715 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-60-2716        TCGA-60-2719        TCGA-60-2720        TCGA-60-2721 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-60-2722        TCGA-60-2723        TCGA-60-2724        TCGA-60-2725 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-60-2726        TCGA-66-2727        TCGA-66-2734        TCGA-66-2737 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2753        TCGA-66-2754 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-66-2755        TCGA-66-2756        TCGA-66-2757        TCGA-66-2758 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-66-2759        TCGA-66-2763        TCGA-66-2765        TCGA-66-2766 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-66-2767        TCGA-66-2768        TCGA-66-2769        TCGA-66-2770 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-66-2771        TCGA-66-2773        TCGA-66-2777        TCGA-66-2778 
  "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-66-2780        TCGA-66-2781        TCGA-66-2782        TCGA-66-2783 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-66-2785        TCGA-66-2786        TCGA-66-2787        TCGA-66-2788 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-66-2789        TCGA-66-2790        TCGA-66-2791        TCGA-66-2792 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-66-2793        TCGA-66-2794        TCGA-66-2795        TCGA-66-2800 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-68-7755        TCGA-68-7756        TCGA-68-7757        TCGA-68-8250 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-68-8251        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
  "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
  "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8007 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-77-8008        TCGA-77-8009        TCGA-77-8128        TCGA-77-8130 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-77-8131        TCGA-77-8133        TCGA-77-8136        TCGA-77-8138 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8140        TCGA-77-8143        TCGA-77-8144 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-77-8145        TCGA-77-8148        TCGA-77-8150        TCGA-77-8153 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ        TCGA-77-A5G3 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6560        TCGA-85-6561 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-7950 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-85-8048        TCGA-85-8049        TCGA-85-8052        TCGA-85-8070 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-85-8071        TCGA-85-8072        TCGA-85-8276        TCGA-85-8277 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-85-8287        TCGA-85-8288        TCGA-85-8350        TCGA-85-8351 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-85-8352        TCGA-85-8353        TCGA-85-8354        TCGA-85-8355 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-85-8479        TCGA-85-8481        TCGA-85-8580        TCGA-85-8582 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-85-8664        TCGA-85-8666        TCGA-85-A4CL        TCGA-85-A4QR 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-85-A50M        TCGA-85-A513        TCGA-85-A53L        TCGA-90-6837 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-90-A4ED        TCGA-90-A4EE        TCGA-92-7340        TCGA-92-7341 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-92-8063        TCGA-92-8064        TCGA-92-8065        TCGA-94-7033 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-94-7557        TCGA-94-7943        TCGA-96-7544        TCGA-96-7545 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-96-8169        TCGA-96-8170        TCGA-96-A4JK        TCGA-96-A4JL 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-NC-A5HI 
"2P GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
  "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
  "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
  "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
  "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
  "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56V        TCGA-46-3768        TCGA-46-6025 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-5898 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-56-7730        TCGA-56-7822        TCGA-56-8503        TCGA-56-8504 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-56-8622        TCGA-56-8624        TCGA-56-8625        TCGA-56-8626 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-56-A4BY        TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-58-8386        TCGA-58-8387        TCGA-58-8388        TCGA-58-8390 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-58-8391        TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-58-A46K        TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N 
  "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-60-2695        TCGA-60-2696        TCGA-60-2697        TCGA-60-2698 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-60-2703        TCGA-60-2704        TCGA-60-2706        TCGA-60-2707 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-60-2708        TCGA-60-2709        TCGA-60-2710        TCGA-60-2711 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-60-2712        TCGA-60-2713        TCGA-60-2714        TCGA-60-2715 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-60-2716        TCGA-60-2719        TCGA-60-2720        TCGA-60-2721 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-60-2722        TCGA-60-2723        TCGA-60-2724        TCGA-60-2725 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-60-2726        TCGA-66-2727        TCGA-66-2734        TCGA-66-2737 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2753        TCGA-66-2754 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-66-2755        TCGA-66-2756        TCGA-66-2757        TCGA-66-2758 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-66-2759        TCGA-66-2763        TCGA-66-2765        TCGA-66-2766 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-66-2767        TCGA-66-2768        TCGA-66-2769        TCGA-66-2770 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-66-2771        TCGA-66-2773        TCGA-66-2777        TCGA-66-2778 
  "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-66-2780        TCGA-66-2781        TCGA-66-2782        TCGA-66-2783 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-66-2785        TCGA-66-2786        TCGA-66-2787        TCGA-66-2788 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-66-2789        TCGA-66-2790        TCGA-66-2791        TCGA-66-2792 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-66-2793        TCGA-66-2794        TCGA-66-2795        TCGA-66-2800 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-68-7755        TCGA-68-7756        TCGA-68-7757        TCGA-68-8250 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-68-8251        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
  "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
  "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8007 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-77-8008        TCGA-77-8009        TCGA-77-8128        TCGA-77-8130 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-77-8131        TCGA-77-8133        TCGA-77-8136        TCGA-77-8138 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8140        TCGA-77-8143        TCGA-77-8144 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-77-8145        TCGA-77-8148        TCGA-77-8150        TCGA-77-8153 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ        TCGA-77-A5G3 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6560        TCGA-85-6561 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-7950 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-85-8048        TCGA-85-8049        TCGA-85-8052        TCGA-85-8070 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-85-8071        TCGA-85-8072        TCGA-85-8276        TCGA-85-8277 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-85-8287        TCGA-85-8288        TCGA-85-8350        TCGA-85-8351 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-85-8352        TCGA-85-8353        TCGA-85-8354        TCGA-85-8355 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-85-8479        TCGA-85-8481        TCGA-85-8580        TCGA-85-8582 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-85-8664        TCGA-85-8666        TCGA-85-A4CL        TCGA-85-A4QR 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-85-A50M        TCGA-85-A513        TCGA-85-A53L        TCGA-90-6837 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-90-A4ED        TCGA-90-A4EE        TCGA-92-7340        TCGA-92-7341 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-92-8063        TCGA-92-8064        TCGA-92-8065        TCGA-94-7033 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-94-7557        TCGA-94-7943        TCGA-96-7544        TCGA-96-7545 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-96-8169        TCGA-96-8170        TCGA-96-A4JK        TCGA-96-A4JL 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-NC-A5HI 
"2P GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
  "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
  "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
  "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
  "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
  "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56V        TCGA-46-3768        TCGA-46-6025 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-5898 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-56-7730        TCGA-56-7822        TCGA-56-8503        TCGA-56-8504 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-56-8622        TCGA-56-8624        TCGA-56-8625        TCGA-56-8626 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-56-A4BY        TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-58-8386        TCGA-58-8387        TCGA-58-8388        TCGA-58-8390 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-58-8391        TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-58-A46K        TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N 
  "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-60-2695        TCGA-60-2696        TCGA-60-2697        TCGA-60-2698 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-60-2703        TCGA-60-2704        TCGA-60-2706        TCGA-60-2707 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-60-2708        TCGA-60-2709        TCGA-60-2710        TCGA-60-2711 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-60-2712        TCGA-60-2713        TCGA-60-2714        TCGA-60-2715 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-60-2716        TCGA-60-2719        TCGA-60-2720        TCGA-60-2721 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-60-2722        TCGA-60-2723        TCGA-60-2724        TCGA-60-2725 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-60-2726        TCGA-66-2727        TCGA-66-2734        TCGA-66-2737 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2753        TCGA-66-2754 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-66-2755        TCGA-66-2756        TCGA-66-2757        TCGA-66-2758 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-66-2759        TCGA-66-2763        TCGA-66-2765        TCGA-66-2766 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-66-2767        TCGA-66-2768        TCGA-66-2769        TCGA-66-2770 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-66-2771        TCGA-66-2773        TCGA-66-2777        TCGA-66-2778 
  "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-66-2780        TCGA-66-2781        TCGA-66-2782        TCGA-66-2783 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-66-2785        TCGA-66-2786        TCGA-66-2787        TCGA-66-2788 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-66-2789        TCGA-66-2790        TCGA-66-2791        TCGA-66-2792 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-66-2793        TCGA-66-2794        TCGA-66-2795        TCGA-66-2800 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-68-7755        TCGA-68-7756        TCGA-68-7757        TCGA-68-8250 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-68-8251        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
  "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
  "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8007 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-77-8008        TCGA-77-8009        TCGA-77-8128        TCGA-77-8130 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-77-8131        TCGA-77-8133        TCGA-77-8136        TCGA-77-8138 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8140        TCGA-77-8143        TCGA-77-8144 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-77-8145        TCGA-77-8148        TCGA-77-8150        TCGA-77-8153 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ        TCGA-77-A5G3 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6560        TCGA-85-6561 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-7950 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-85-8048        TCGA-85-8049        TCGA-85-8052        TCGA-85-8070 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-85-8071        TCGA-85-8072        TCGA-85-8276        TCGA-85-8277 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-85-8287        TCGA-85-8288        TCGA-85-8350        TCGA-85-8351 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-85-8352        TCGA-85-8353        TCGA-85-8354        TCGA-85-8355 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-85-8479        TCGA-85-8481        TCGA-85-8580        TCGA-85-8582 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-85-8664        TCGA-85-8666        TCGA-85-A4CL        TCGA-85-A4QR 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-85-A50M        TCGA-85-A513        TCGA-85-A53L        TCGA-90-6837 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-90-A4ED        TCGA-90-A4EE        TCGA-92-7340        TCGA-92-7341 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-92-8063        TCGA-92-8064        TCGA-92-8065        TCGA-94-7033 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-94-7557        TCGA-94-7943        TCGA-96-7544        TCGA-96-7545 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-96-8169        TCGA-96-8170        TCGA-96-A4JK        TCGA-96-A4JL 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-NC-A5HI 
"2P GAIN WILD-TYPE" 
[1] "hr=" "1.3"
D3V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  2P GAIN MUTATED         1       22       55        1        23        34
  2P GAIN WILD-TYPE       0       46       78        0        27        37
                   vv
clus                STAGE IIIA STAGE IIIB STAGE IV
  2P GAIN MUTATED           24         10        2
  2P GAIN WILD-TYPE         30         10        3
D3V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  2P GAIN MUTATED    34 107  23  10
  2P GAIN WILD-TYPE  59 143  21   9
D3V4, multiclass
    clus
vv   2P GAIN MUTATED 2P GAIN WILD-TYPE
  T1              34                59
  T2             107               143
  T3              23                21
  T4              10                 9
                   vv
clus                 N0  N1  N2  N3
  2P GAIN MUTATED   102  57  12   2
  2P GAIN WILD-TYPE 151  52  22   3
D3V5, multiclass
    clus
vv   2P GAIN MUTATED 2P GAIN WILD-TYPE
  N0             102               151
  N1              57                52
  N2              12                22
  N3               2                 3
                   vv
clus                 M0  M1  MX
  2P GAIN MUTATED   149   2  20
  2P GAIN WILD-TYPE 199   3  27
D3V6, multiclass
    clus
vv   2P GAIN MUTATED 2P GAIN WILD-TYPE
  M0             149               199
  M1               2                 3
  MX              20                27
D3V7, binary
                   cls
clus                  0   1
  2P GAIN MUTATED    32 142
  2P GAIN WILD-TYPE  69 163
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2P GAIN MUTATED     32  142
  2P GAIN WILD-TYPE   69  163
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  FEMALE              32                69
  MALE               142               163
D3V8, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  2P GAIN MUTATED                                      10
  2P GAIN WILD-TYPE                                     2
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  2P GAIN MUTATED                                        1
  2P GAIN WILD-TYPE                                      5
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  2P GAIN MUTATED                                         0
  2P GAIN WILD-TYPE                                       1
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  2P GAIN MUTATED                                                           163
  2P GAIN WILD-TYPE                                                         224
D3V9, multiclass
                                                             clus
vv                                                            2P GAIN MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    10
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                    1
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             163
                                                             clus
vv                                                            2P GAIN WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       2
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                      5
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               224
D3V10, binary
                   cls
clus                  0   1
  2P GAIN MUTATED     8 166
  2P GAIN WILD-TYPE   4 228
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2P GAIN MUTATED      8  166
  2P GAIN WILD-TYPE    4  228
     clus
vv    2P GAIN MUTATED 2P GAIN WILD-TYPE
  NO                8                 4
  YES             166               228
D3V11, continuous
D3V12, continuous
                   vv
clus                 R0  R1  R2  RX
  2P GAIN MUTATED   146   1   1   5
  2P GAIN WILD-TYPE 184   7   3  13
D3V13, multiclass
    clus
vv   2P GAIN MUTATED 2P GAIN WILD-TYPE
  R0             146               184
  R1               1                 7
  R2               1                 3
  RX               5                13

Clustering(4) Variable = 2Q GAIN MUTATION ANALYSIS
D4V1, survival
                   sevent
clus2                 0   1
  2Q GAIN MUTATED    69  41
  2Q GAIN WILD-TYPE 170  97
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
              110               267 
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
               41                97 
$`2Q GAIN MUTATED`
TCGA-18-3409 TCGA-18-3411 TCGA-18-3412 TCGA-18-3414 TCGA-21-1072 TCGA-21-1081 
       79.46        46.52        11.34        13.02        99.16         9.30 
TCGA-21-1083 TCGA-21-A5DI TCGA-22-4595 TCGA-22-4605 TCGA-22-5474 TCGA-22-5477 
        8.78        32.19        24.13        32.02        14.60        44.22 
TCGA-22-5480 TCGA-22-5483 TCGA-22-5489 TCGA-22-5491 TCGA-33-4532 TCGA-33-4566 
       71.34        18.84        62.86        56.32         7.63       173.79 
TCGA-33-4582 TCGA-33-4583 TCGA-33-4587 TCGA-33-6738 TCGA-34-2596 TCGA-34-2600 
      103.53       141.34        54.44        26.99         2.63        61.61 
TCGA-34-2604 TCGA-34-2605 TCGA-34-5236 TCGA-34-5240 TCGA-34-5241 TCGA-34-7107 
       31.50        28.96         9.04        12.00        14.07         1.08 
TCGA-37-3792 TCGA-37-4130 TCGA-37-4133 TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 
        0.39         8.09         7.82        47.80        74.07        44.71 
TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5040 TCGA-43-2576 TCGA-43-2581 
       15.58        35.64        35.70        17.06        40.21        38.66 
TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-5670 TCGA-43-6143 TCGA-46-3768 
       27.02        33.07        11.47        18.05        12.36         9.96 
TCGA-51-4080 TCGA-52-7809 TCGA-52-7810 TCGA-52-7811 TCGA-56-5898 TCGA-56-6546 
        0.39         5.42        30.31         8.75        18.25         1.02 
TCGA-56-7222 TCGA-56-7223 TCGA-56-7582 TCGA-56-7730 TCGA-56-8504 TCGA-56-8629 
        0.43         0.99         0.85         0.20         5.82         1.12 
TCGA-56-A4BX TCGA-56-A5DS TCGA-58-8391 TCGA-58-A46M TCGA-58-A46N TCGA-60-2703 
        1.51         0.26        71.24        23.24        17.72        96.82 
TCGA-60-2708 TCGA-60-2711 TCGA-60-2712 TCGA-60-2719 TCGA-60-2726 TCGA-66-2759 
       80.42        41.39         9.01        42.61        11.77        25.02 
TCGA-66-2770 TCGA-66-2773 TCGA-66-2792 TCGA-66-2793 TCGA-68-7755 TCGA-68-7756 
       23.01         3.02        30.02        10.06         2.73         6.64 
TCGA-77-6842 TCGA-77-6845 TCGA-77-7139 TCGA-77-7142 TCGA-77-8009 TCGA-77-8130 
       29.56        23.28        89.95        42.25        53.95        82.92 
TCGA-77-8139 TCGA-77-8145 TCGA-77-8150 TCGA-77-8156 TCGA-77-A5G3 TCGA-77-A5GH 
      104.09         6.97        54.41         0.33       117.57        23.44 
TCGA-85-6560 TCGA-85-7843 TCGA-85-7844 TCGA-85-8070 TCGA-85-8277 TCGA-85-8287 
        0.36         1.15         1.25        16.77         0.36         1.45 
TCGA-85-8350 TCGA-85-8354 TCGA-85-8666 TCGA-85-A4QR TCGA-85-A50M TCGA-90-7769 
        1.97         2.01        15.58         0.82         0.62        11.77 
TCGA-90-7964 TCGA-90-A4EE TCGA-92-7341 TCGA-94-7557 TCGA-96-7545 TCGA-J1-A4AH 
       14.07        10.88         3.48         0.16        44.15         7.30 
TCGA-MF-A522 TCGA-NC-A5HG 
        3.02        50.86 

$`2Q GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3415 TCGA-18-3416 
       12.16         4.47        81.07         4.80        59.51        28.34 
TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 
       24.92         1.61        43.76         6.15         2.79        90.51 
TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 TCGA-21-1075 TCGA-21-1076 
        3.02        27.16       119.54        46.88        70.13        60.89 
TCGA-21-1077 TCGA-21-1078 TCGA-21-1079 TCGA-21-1080 TCGA-21-1082 TCGA-21-5782 
       34.78        15.55        31.69       122.43       119.80        31.63 
TCGA-21-5783 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0940 TCGA-22-0944 
       88.08        41.69        33.93        10.82        19.99         7.33 
TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 
       14.93         4.31        64.21         1.74        14.10        27.02 
TCGA-22-1017 TCGA-22-4591 TCGA-22-4593 TCGA-22-4594 TCGA-22-4596 TCGA-22-4599 
       48.82        20.45        35.08        48.33         0.56        38.17 
TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 
       34.75        13.12        19.30         9.53        11.77        31.73 
TCGA-22-5472 TCGA-22-5473 TCGA-22-5478 TCGA-22-5479 TCGA-22-5481 TCGA-22-5482 
       64.90        63.52         0.79        54.28        79.20        11.74 
TCGA-22-5485 TCGA-22-5492 TCGA-22-A5C4 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 
       30.08        16.60         0.95       114.05        97.94        43.10 
TCGA-33-4586 TCGA-33-4589 TCGA-33-6737 TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 
       14.07        10.98        19.76        32.84        31.23        50.24 
TCGA-34-5232 TCGA-34-5234 TCGA-34-5239 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 
       67.79        56.38        23.24        30.94        18.12         4.96 
TCGA-37-3783 TCGA-37-3789 TCGA-37-4129 TCGA-37-4132 TCGA-37-4135 TCGA-37-4141 
        3.95         0.43         6.54         7.46         6.81         0.39 
TCGA-37-5819 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
        3.39        68.58        55.17        70.03        60.76         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 TCGA-39-5039 TCGA-43-2578 
       24.33         1.94        27.35        36.39        17.88        22.49 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 
       24.89        10.19         5.42         3.78         6.97         1.58 
TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 TCGA-43-8118 TCGA-43-A474 TCGA-43-A475 
       66.51         6.64         6.35         2.93        11.61         9.73 
TCGA-43-A56V TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4081 TCGA-52-7622 
        5.06        10.65        13.87         0.39        29.95        17.79 
TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-7221 TCGA-56-7579 
       27.45        28.93         0.10         2.04         0.99         1.45 
TCGA-56-7580 TCGA-56-7822 TCGA-56-8503 TCGA-56-8622 TCGA-56-8624 TCGA-56-8625 
        1.32         0.03         1.35         1.78         1.18         2.07 
TCGA-56-8626 TCGA-56-8628 TCGA-56-A49D TCGA-56-A4BY TCGA-56-A4ZJ TCGA-56-A4ZK 
        0.56         0.53         0.99         0.99         1.02         0.13 
TCGA-58-8386 TCGA-58-8387 TCGA-58-8388 TCGA-58-8390 TCGA-58-8392 TCGA-58-8393 
        0.03        13.25        12.43        29.95        16.47        34.78 
TCGA-58-A46J TCGA-58-A46K TCGA-58-A46L TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 
       64.87        34.36        36.59        21.07         3.58        12.23 
TCGA-60-2698 TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 TCGA-60-2709 TCGA-60-2710 
       10.22        37.94        92.71        21.70        49.48        66.51 
TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 TCGA-60-2720 TCGA-60-2721 
       56.91        50.33        35.34        48.49         3.16        32.28 
TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-66-2727 TCGA-66-2734 
       29.85        35.90        23.57        26.79        16.96        43.10 
TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 
        2.01        21.07         0.99         1.02         2.01         0.92 
TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 
        0.99         0.99        20.98         0.99         2.01         1.02 
TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 TCGA-66-2771 TCGA-66-2777 TCGA-66-2778 
        2.01         2.01         7.07        19.00         2.01        19.00 
TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 
       12.03         3.98        12.00        24.95         1.94        25.97 
TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 TCGA-66-2794 
       40.01        22.98         4.04        22.98         5.03        54.08 
TCGA-66-2795 TCGA-66-2800 TCGA-68-7757 TCGA-68-8250 TCGA-68-8251 TCGA-77-6843 
        4.01        49.05         6.94         8.02         3.12        73.08 
TCGA-77-6844 TCGA-77-7138 TCGA-77-7140 TCGA-77-7141 TCGA-77-7335 TCGA-77-7337 
       75.09        11.18        20.78         0.49        70.09       106.95 
TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 TCGA-77-8007 TCGA-77-8008 TCGA-77-8128 
        0.16        46.78        15.75         6.51        86.76        37.81 
TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 TCGA-77-8140 TCGA-77-8143 
       12.59        53.92        39.09        17.69        11.54        26.40 
TCGA-77-8144 TCGA-77-8148 TCGA-77-8153 TCGA-77-8154 TCGA-77-A5FZ TCGA-77-A5GB 
       27.39         9.63        55.33        35.90       126.18        30.81 
TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 TCGA-85-7697 TCGA-85-7698 TCGA-85-7699 
        0.79         1.12         0.59         0.33         1.61         0.03 
TCGA-85-7950 TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 TCGA-85-8071 TCGA-85-8072 
        1.97         0.85         1.97         0.53        14.07         1.18 
TCGA-85-8276 TCGA-85-8288 TCGA-85-8351 TCGA-85-8352 TCGA-85-8353 TCGA-85-8355 
        0.43         1.78         1.81         2.20         1.78         0.66 
TCGA-85-8479 TCGA-85-8481 TCGA-85-8580 TCGA-85-8582 TCGA-85-8664 TCGA-85-A4CL 
        0.72         0.66        14.60        13.91         0.10         0.46 
TCGA-85-A513 TCGA-85-A53L TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 TCGA-90-A4ED 
        0.79         0.43        24.89         9.50         2.93         8.02 
TCGA-92-7340 TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 TCGA-94-7943 
        2.70         4.01         5.26         2.27         2.86        11.70 
TCGA-96-7544 TCGA-96-8169 TCGA-96-8170 TCGA-96-A4JK TCGA-96-A4JL TCGA-98-7454 
       39.88         6.18         6.90         8.98         6.02         8.42 
TCGA-98-8020 TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 TCGA-L3-A4E7 TCGA-L3-A524 
        2.73        13.58         7.33        10.13         1.15        14.76 
TCGA-LA-A446 TCGA-NC-A5HE TCGA-NC-A5HI 
        1.18        56.61        37.32 

  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
             0.16              0.03 
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
           173.79            126.18 
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
           16.175            12.230 
[1] "0.2 - 173.8 (16.2)" "0.0 - 126.2 (12.2)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56V        TCGA-46-3768        TCGA-46-6025 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-5898 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-56-7730        TCGA-56-7822        TCGA-56-8503        TCGA-56-8504 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-56-8622        TCGA-56-8624        TCGA-56-8625        TCGA-56-8626 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-56-A4BY        TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-58-8386        TCGA-58-8387        TCGA-58-8388        TCGA-58-8390 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-58-8391        TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-58-A46K        TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-60-2695        TCGA-60-2696        TCGA-60-2697        TCGA-60-2698 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-60-2703        TCGA-60-2704        TCGA-60-2706        TCGA-60-2707 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-60-2708        TCGA-60-2709        TCGA-60-2710        TCGA-60-2711 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-60-2712        TCGA-60-2713        TCGA-60-2714        TCGA-60-2715 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-60-2716        TCGA-60-2719        TCGA-60-2720        TCGA-60-2721 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-60-2722        TCGA-60-2723        TCGA-60-2724        TCGA-60-2725 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-60-2726        TCGA-66-2727        TCGA-66-2734        TCGA-66-2737 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2753        TCGA-66-2754 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-66-2755        TCGA-66-2756        TCGA-66-2757        TCGA-66-2758 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-66-2759        TCGA-66-2763        TCGA-66-2765        TCGA-66-2766 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-66-2767        TCGA-66-2768        TCGA-66-2769        TCGA-66-2770 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-66-2771        TCGA-66-2773        TCGA-66-2777        TCGA-66-2778 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-66-2780        TCGA-66-2781        TCGA-66-2782        TCGA-66-2783 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-66-2785        TCGA-66-2786        TCGA-66-2787        TCGA-66-2788 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-66-2789        TCGA-66-2790        TCGA-66-2791        TCGA-66-2792 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-66-2793        TCGA-66-2794        TCGA-66-2795        TCGA-66-2800 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-68-7755        TCGA-68-7756        TCGA-68-7757        TCGA-68-8250 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-68-8251        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8007 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-77-8008        TCGA-77-8009        TCGA-77-8128        TCGA-77-8130 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-77-8131        TCGA-77-8133        TCGA-77-8136        TCGA-77-8138 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8140        TCGA-77-8143        TCGA-77-8144 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-77-8145        TCGA-77-8148        TCGA-77-8150        TCGA-77-8153 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ        TCGA-77-A5G3 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6560        TCGA-85-6561 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-7950 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-85-8048        TCGA-85-8049        TCGA-85-8052        TCGA-85-8070 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-85-8071        TCGA-85-8072        TCGA-85-8276        TCGA-85-8277 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-85-8287        TCGA-85-8288        TCGA-85-8350        TCGA-85-8351 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-85-8352        TCGA-85-8353        TCGA-85-8354        TCGA-85-8355 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-85-8479        TCGA-85-8481        TCGA-85-8580        TCGA-85-8582 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-85-8664        TCGA-85-8666        TCGA-85-A4CL        TCGA-85-A4QR 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-85-A50M        TCGA-85-A513        TCGA-85-A53L        TCGA-90-6837 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-90-A4ED        TCGA-90-A4EE        TCGA-92-7340        TCGA-92-7341 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-92-8063        TCGA-92-8064        TCGA-92-8065        TCGA-94-7033 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-94-7557        TCGA-94-7943        TCGA-96-7544        TCGA-96-7545 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-96-8169        TCGA-96-8170        TCGA-96-A4JK        TCGA-96-A4JL 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-NC-A5HI 
"2Q GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56V        TCGA-46-3768        TCGA-46-6025 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-5898 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-56-7730        TCGA-56-7822        TCGA-56-8503        TCGA-56-8504 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-56-8622        TCGA-56-8624        TCGA-56-8625        TCGA-56-8626 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-56-A4BY        TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-58-8386        TCGA-58-8387        TCGA-58-8388        TCGA-58-8390 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-58-8391        TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-58-A46K        TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-60-2695        TCGA-60-2696        TCGA-60-2697        TCGA-60-2698 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-60-2703        TCGA-60-2704        TCGA-60-2706        TCGA-60-2707 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-60-2708        TCGA-60-2709        TCGA-60-2710        TCGA-60-2711 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-60-2712        TCGA-60-2713        TCGA-60-2714        TCGA-60-2715 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-60-2716        TCGA-60-2719        TCGA-60-2720        TCGA-60-2721 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-60-2722        TCGA-60-2723        TCGA-60-2724        TCGA-60-2725 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-60-2726        TCGA-66-2727        TCGA-66-2734        TCGA-66-2737 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2753        TCGA-66-2754 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-66-2755        TCGA-66-2756        TCGA-66-2757        TCGA-66-2758 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-66-2759        TCGA-66-2763        TCGA-66-2765        TCGA-66-2766 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-66-2767        TCGA-66-2768        TCGA-66-2769        TCGA-66-2770 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-66-2771        TCGA-66-2773        TCGA-66-2777        TCGA-66-2778 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-66-2780        TCGA-66-2781        TCGA-66-2782        TCGA-66-2783 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-66-2785        TCGA-66-2786        TCGA-66-2787        TCGA-66-2788 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-66-2789        TCGA-66-2790        TCGA-66-2791        TCGA-66-2792 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-66-2793        TCGA-66-2794        TCGA-66-2795        TCGA-66-2800 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-68-7755        TCGA-68-7756        TCGA-68-7757        TCGA-68-8250 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-68-8251        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8007 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-77-8008        TCGA-77-8009        TCGA-77-8128        TCGA-77-8130 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-77-8131        TCGA-77-8133        TCGA-77-8136        TCGA-77-8138 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8140        TCGA-77-8143        TCGA-77-8144 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-77-8145        TCGA-77-8148        TCGA-77-8150        TCGA-77-8153 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ        TCGA-77-A5G3 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6560        TCGA-85-6561 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-7950 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-85-8048        TCGA-85-8049        TCGA-85-8052        TCGA-85-8070 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-85-8071        TCGA-85-8072        TCGA-85-8276        TCGA-85-8277 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-85-8287        TCGA-85-8288        TCGA-85-8350        TCGA-85-8351 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-85-8352        TCGA-85-8353        TCGA-85-8354        TCGA-85-8355 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-85-8479        TCGA-85-8481        TCGA-85-8580        TCGA-85-8582 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-85-8664        TCGA-85-8666        TCGA-85-A4CL        TCGA-85-A4QR 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-85-A50M        TCGA-85-A513        TCGA-85-A53L        TCGA-90-6837 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-90-A4ED        TCGA-90-A4EE        TCGA-92-7340        TCGA-92-7341 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-92-8063        TCGA-92-8064        TCGA-92-8065        TCGA-94-7033 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-94-7557        TCGA-94-7943        TCGA-96-7544        TCGA-96-7545 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-96-8169        TCGA-96-8170        TCGA-96-A4JK        TCGA-96-A4JL 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-NC-A5HI 
"2Q GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56V        TCGA-46-3768        TCGA-46-6025 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-5898 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-56-7730        TCGA-56-7822        TCGA-56-8503        TCGA-56-8504 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-56-8622        TCGA-56-8624        TCGA-56-8625        TCGA-56-8626 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-56-A4BY        TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-58-8386        TCGA-58-8387        TCGA-58-8388        TCGA-58-8390 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-58-8391        TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-58-A46K        TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-60-2695        TCGA-60-2696        TCGA-60-2697        TCGA-60-2698 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-60-2703        TCGA-60-2704        TCGA-60-2706        TCGA-60-2707 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-60-2708        TCGA-60-2709        TCGA-60-2710        TCGA-60-2711 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-60-2712        TCGA-60-2713        TCGA-60-2714        TCGA-60-2715 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-60-2716        TCGA-60-2719        TCGA-60-2720        TCGA-60-2721 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-60-2722        TCGA-60-2723        TCGA-60-2724        TCGA-60-2725 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-60-2726        TCGA-66-2727        TCGA-66-2734        TCGA-66-2737 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2753        TCGA-66-2754 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-66-2755        TCGA-66-2756        TCGA-66-2757        TCGA-66-2758 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-66-2759        TCGA-66-2763        TCGA-66-2765        TCGA-66-2766 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-66-2767        TCGA-66-2768        TCGA-66-2769        TCGA-66-2770 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-66-2771        TCGA-66-2773        TCGA-66-2777        TCGA-66-2778 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-66-2780        TCGA-66-2781        TCGA-66-2782        TCGA-66-2783 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-66-2785        TCGA-66-2786        TCGA-66-2787        TCGA-66-2788 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-66-2789        TCGA-66-2790        TCGA-66-2791        TCGA-66-2792 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-66-2793        TCGA-66-2794        TCGA-66-2795        TCGA-66-2800 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-68-7755        TCGA-68-7756        TCGA-68-7757        TCGA-68-8250 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-68-8251        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8007 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-77-8008        TCGA-77-8009        TCGA-77-8128        TCGA-77-8130 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-77-8131        TCGA-77-8133        TCGA-77-8136        TCGA-77-8138 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8140        TCGA-77-8143        TCGA-77-8144 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-77-8145        TCGA-77-8148        TCGA-77-8150        TCGA-77-8153 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ        TCGA-77-A5G3 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6560        TCGA-85-6561 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-7950 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-85-8048        TCGA-85-8049        TCGA-85-8052        TCGA-85-8070 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-85-8071        TCGA-85-8072        TCGA-85-8276        TCGA-85-8277 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-85-8287        TCGA-85-8288        TCGA-85-8350        TCGA-85-8351 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-85-8352        TCGA-85-8353        TCGA-85-8354        TCGA-85-8355 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-85-8479        TCGA-85-8481        TCGA-85-8580        TCGA-85-8582 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-85-8664        TCGA-85-8666        TCGA-85-A4CL        TCGA-85-A4QR 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-85-A50M        TCGA-85-A513        TCGA-85-A53L        TCGA-90-6837 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-90-A4ED        TCGA-90-A4EE        TCGA-92-7340        TCGA-92-7341 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-92-8063        TCGA-92-8064        TCGA-92-8065        TCGA-94-7033 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-94-7557        TCGA-94-7943        TCGA-96-7544        TCGA-96-7545 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-96-8169        TCGA-96-8170        TCGA-96-A4JK        TCGA-96-A4JL 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-NC-A5HI 
"2Q GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D4V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  2Q GAIN MUTATED         1       14       37        1        17        22
  2Q GAIN WILD-TYPE       0       54       96        0        33        49
                   vv
clus                STAGE IIIA STAGE IIIB STAGE IV
  2Q GAIN MUTATED           15          5        1
  2Q GAIN WILD-TYPE         39         15        4
D4V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  2Q GAIN MUTATED    23  73  12   7
  2Q GAIN WILD-TYPE  70 177  32  12
D4V4, multiclass
    clus
vv   2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  T1              23                70
  T2              73               177
  T3              12                32
  T4               7                12
                   vv
clus                 N0  N1  N2  N3
  2Q GAIN MUTATED    70  37   8   0
  2Q GAIN WILD-TYPE 183  72  26   5
D4V5, multiclass
    clus
vv   2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  N0              70               183
  N1              37                72
  N2               8                26
  N3               0                 5
                   vv
clus                 M0  M1  MX
  2Q GAIN MUTATED    95   1  16
  2Q GAIN WILD-TYPE 253   4  31
D4V6, multiclass
    clus
vv   2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  M0              95               253
  M1               1                 4
  MX              16                31
D4V7, binary
                   cls
clus                  0   1
  2Q GAIN MUTATED    23  92
  2Q GAIN WILD-TYPE  78 213
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2Q GAIN MUTATED     23   92
  2Q GAIN WILD-TYPE   78  213
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  FEMALE              23                78
  MALE                92               213
D4V8, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  2Q GAIN MUTATED                                       8
  2Q GAIN WILD-TYPE                                     4
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  2Q GAIN MUTATED                                        1
  2Q GAIN WILD-TYPE                                      5
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  2Q GAIN MUTATED                                         1
  2Q GAIN WILD-TYPE                                       0
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  2Q GAIN MUTATED                                                           105
  2Q GAIN WILD-TYPE                                                         282
D4V9, multiclass
                                                             clus
vv                                                            2Q GAIN MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     8
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                    1
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                   1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             105
                                                             clus
vv                                                            2Q GAIN WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       4
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                      5
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                     0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               282
D4V10, binary
                   cls
clus                  0   1
  2Q GAIN MUTATED     6 109
  2Q GAIN WILD-TYPE   6 285
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2Q GAIN MUTATED      6  109
  2Q GAIN WILD-TYPE    6  285
     clus
vv    2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  NO                6                 6
  YES             109               285
D4V11, continuous
D4V12, continuous
                   vv
clus                 R0  R1  R2  RX
  2Q GAIN MUTATED    95   1   0   2
  2Q GAIN WILD-TYPE 235   7   4  16
D4V13, multiclass
    clus
vv   2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  R0              95               235
  R1               1                 7
  R2               0                 4
  RX               2                16

Clustering(5) Variable = 3P GAIN MUTATION ANALYSIS
D5V1, survival
                   sevent
clus2                 0   1
  3P GAIN MUTATED    41  39
  3P GAIN WILD-TYPE 198  99
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
               80               297 
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
               39                99 
$`3P GAIN MUTATED`
TCGA-18-3410 TCGA-18-3414 TCGA-21-1080 TCGA-21-1081 TCGA-22-1000 TCGA-22-1002 
        4.80        13.02       122.43         9.30        14.93         4.31 
TCGA-22-4593 TCGA-22-4595 TCGA-22-4601 TCGA-22-5477 TCGA-22-5485 TCGA-22-5489 
       35.08        24.13        34.75        44.22        30.08        62.86 
TCGA-22-5491 TCGA-33-4533 TCGA-33-4538 TCGA-33-4582 TCGA-33-4586 TCGA-34-2609 
       56.32       114.05        97.94       103.53        14.07        31.23 
TCGA-34-5232 TCGA-34-5236 TCGA-34-5240 TCGA-34-5241 TCGA-34-5928 TCGA-34-7107 
       67.79         9.04        12.00        14.07        18.12         1.08 
TCGA-37-3783 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5029 TCGA-39-5030 
        3.95        44.71        68.58        55.17        24.33         1.94 
TCGA-39-5037 TCGA-39-5040 TCGA-43-3394 TCGA-43-5670 TCGA-43-6771 TCGA-43-A56V 
       35.70        17.06        27.02        18.05         5.42         5.06 
TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-52-7810 TCGA-56-5898 TCGA-56-7223 
        9.96        10.65        13.87        30.31        18.25         0.99 
TCGA-56-7730 TCGA-56-A49D TCGA-56-A4ZK TCGA-58-8393 TCGA-58-A46J TCGA-58-A46K 
        0.20         0.99         0.13        34.78        64.87        34.36 
TCGA-58-A46M TCGA-60-2703 TCGA-60-2706 TCGA-60-2713 TCGA-60-2715 TCGA-66-2727 
       23.24        96.82        92.71        56.91        35.34        16.96 
TCGA-66-2756 TCGA-66-2766 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-77-7140 
        0.99         1.02        19.00         3.02         2.01        20.78 
TCGA-77-8008 TCGA-77-8009 TCGA-77-8136 TCGA-77-8145 TCGA-77-8150 TCGA-77-A5GB 
       86.76        53.95        39.09         6.97        54.41        30.81 
TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 TCGA-85-8049 TCGA-85-8350 TCGA-85-8352 
        0.79         1.12         0.59         1.97         1.97         2.20 
TCGA-85-8580 TCGA-85-8582 TCGA-85-8664 TCGA-94-7033 TCGA-94-7943 TCGA-96-7545 
       14.60        13.91         0.10         2.86        11.70        44.15 
TCGA-98-8020 TCGA-J1-A4AH 
        2.73         7.30 

$`3P GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07        79.46        46.52        11.34 
TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 
       59.51        28.34        24.92         1.61        43.76         6.15 
TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 
        2.79        90.51         3.02        27.16       119.54        46.88 
TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1079 
       99.16        70.13        60.89        34.78        15.55        31.69 
TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 TCGA-21-5786 
      119.80         8.78        31.63        88.08        41.69        33.93 
TCGA-21-5787 TCGA-21-A5DI TCGA-22-0940 TCGA-22-0944 TCGA-22-1005 TCGA-22-1011 
       10.82        32.19        19.99         7.33        64.21         1.74 
TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 TCGA-22-4594 TCGA-22-4596 
       14.10        27.02        48.82        20.45        48.33         0.56 
TCGA-22-4599 TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 
       38.17        13.12        32.02        19.30         9.53        11.77 
TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5478 TCGA-22-5479 
       31.73        64.90        63.52        14.60         0.79        54.28 
TCGA-22-5480 TCGA-22-5481 TCGA-22-5482 TCGA-22-5483 TCGA-22-5492 TCGA-22-A5C4 
       71.34        79.20        11.74        18.84        16.60         0.95 
TCGA-33-4532 TCGA-33-4547 TCGA-33-4566 TCGA-33-4583 TCGA-33-4587 TCGA-33-4589 
        7.63        43.10       173.79       141.34        54.44        10.98 
TCGA-33-6737 TCGA-33-6738 TCGA-34-2596 TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 
       19.76        26.99         2.63        61.61        31.50        28.96 
TCGA-34-2608 TCGA-34-5231 TCGA-34-5234 TCGA-34-5239 TCGA-34-5927 TCGA-34-5929 
       32.84        50.24        56.38        23.24        30.94         4.96 
TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 
        0.43         0.39         6.54         8.09         7.46         7.82 
TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5011 TCGA-39-5016 TCGA-39-5024 
        6.81         0.39         3.39        47.80        74.07        70.03 
TCGA-39-5027 TCGA-39-5028 TCGA-39-5031 TCGA-39-5034 TCGA-39-5035 TCGA-39-5036 
       60.76         1.71        27.35        36.39        15.58        35.64 
TCGA-39-5039 TCGA-43-2576 TCGA-43-2578 TCGA-43-2581 TCGA-43-3920 TCGA-43-5668 
       17.88        40.21        22.49        38.66        33.07        11.47 
TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 
       12.36        24.89        10.19         3.78         6.97         1.58 
TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 TCGA-43-8118 TCGA-43-A474 TCGA-43-A475 
       66.51         6.64         6.35         2.93        11.61         9.73 
TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 TCGA-52-7811 
        0.39         0.39        29.95        17.79         5.42         8.75 
TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 
       27.45        28.93         0.10         2.04         1.02         0.99 
TCGA-56-7222 TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 TCGA-56-7822 TCGA-56-8503 
        0.43         1.45         1.32         0.85         0.03         1.35 
TCGA-56-8504 TCGA-56-8622 TCGA-56-8624 TCGA-56-8625 TCGA-56-8626 TCGA-56-8628 
        5.82         1.78         1.18         2.07         0.56         0.53 
TCGA-56-8629 TCGA-56-A4BX TCGA-56-A4BY TCGA-56-A4ZJ TCGA-56-A5DS TCGA-58-8386 
        1.12         1.51         0.99         1.02         0.26         0.03 
TCGA-58-8387 TCGA-58-8388 TCGA-58-8390 TCGA-58-8391 TCGA-58-8392 TCGA-58-A46L 
       13.25        12.43        29.95        71.24        16.47        36.59 
TCGA-58-A46N TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2704 
       17.72        21.07         3.58        12.23        10.22        37.94 
TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 
       21.70        80.42        49.48        66.51        41.39         9.01 
TCGA-60-2714 TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 
       50.33        48.49        42.61         3.16        32.28        29.85 
TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2734 TCGA-66-2737 
       35.90        23.57        26.79        11.77        43.10         2.01 
TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 TCGA-66-2757 
       21.07         0.99         1.02         2.01         0.92         0.99 
TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2767 TCGA-66-2768 
       20.98        25.02         0.99         2.01         2.01         2.01 
TCGA-66-2769 TCGA-66-2770 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 
        7.07        23.01        19.00        12.03         3.98        12.00 
TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 
       24.95         1.94        25.97        40.01        22.98         4.04 
TCGA-66-2790 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 
       22.98         5.03        30.02        10.06        54.08         4.01 
TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 TCGA-68-7757 TCGA-68-8250 TCGA-68-8251 
       49.05         2.73         6.64         6.94         8.02         3.12 
TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 
       29.56        73.08        75.09        23.28        11.18        89.95 
TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 
        0.49        42.25        70.09       106.95         0.16        46.78 
TCGA-77-7465 TCGA-77-8007 TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 TCGA-77-8133 
       15.75         6.51        37.81        82.92        12.59        53.92 
TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 TCGA-77-8143 TCGA-77-8144 TCGA-77-8148 
       17.69       104.09        11.54        26.40        27.39         9.63 
TCGA-77-8153 TCGA-77-8154 TCGA-77-8156 TCGA-77-A5FZ TCGA-77-A5G3 TCGA-77-A5GH 
       55.33        35.90         0.33       126.18       117.57        23.44 
TCGA-85-6560 TCGA-85-7697 TCGA-85-7698 TCGA-85-7699 TCGA-85-7843 TCGA-85-7844 
        0.36         0.33         1.61         0.03         1.15         1.25 
TCGA-85-7950 TCGA-85-8048 TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 
        1.97         0.85         0.53        16.77        14.07         1.18 
TCGA-85-8276 TCGA-85-8277 TCGA-85-8287 TCGA-85-8288 TCGA-85-8351 TCGA-85-8353 
        0.43         0.36         1.45         1.78         1.81         1.78 
TCGA-85-8354 TCGA-85-8355 TCGA-85-8479 TCGA-85-8481 TCGA-85-8666 TCGA-85-A4CL 
        2.01         0.66         0.72         0.66        15.58         0.46 
TCGA-85-A4QR TCGA-85-A50M TCGA-85-A513 TCGA-85-A53L TCGA-90-6837 TCGA-90-7766 
        0.82         0.62         0.79         0.43        24.89         9.50 
TCGA-90-7767 TCGA-90-7769 TCGA-90-7964 TCGA-90-A4ED TCGA-90-A4EE TCGA-92-7340 
        2.93        11.77        14.07         8.02        10.88         2.70 
TCGA-92-7341 TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 TCGA-94-7557 TCGA-96-7544 
        3.48         4.01         5.26         2.27         0.16        39.88 
TCGA-96-8169 TCGA-96-8170 TCGA-96-A4JK TCGA-96-A4JL TCGA-98-7454 TCGA-98-8021 
        6.18         6.90         8.98         6.02         8.42        13.58 
TCGA-98-8022 TCGA-98-8023 TCGA-L3-A4E7 TCGA-L3-A524 TCGA-LA-A446 TCGA-MF-A522 
        7.33        10.13         1.15        14.76         1.18         3.02 
TCGA-NC-A5HE TCGA-NC-A5HG TCGA-NC-A5HI 
       56.61        50.86        37.32 

  3P GAIN MUTATED 3P GAIN WILD-TYPE 
             0.10              0.03 
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
           122.43            173.79 
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
            17.01             12.16 
[1] "0.1 - 122.4 (17.0)" "0.0 - 173.8 (12.2)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
  "3P GAIN MUTATED"   "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
  "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
  "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56V        TCGA-46-3768        TCGA-46-6025 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-5898 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-56-7730        TCGA-56-7822        TCGA-56-8503        TCGA-56-8504 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-56-8622        TCGA-56-8624        TCGA-56-8625        TCGA-56-8626 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-56-A4BY        TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-58-8386        TCGA-58-8387        TCGA-58-8388        TCGA-58-8390 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-58-8391        TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-58-A46K        TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-60-2695        TCGA-60-2696        TCGA-60-2697        TCGA-60-2698 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-60-2703        TCGA-60-2704        TCGA-60-2706        TCGA-60-2707 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-60-2708        TCGA-60-2709        TCGA-60-2710        TCGA-60-2711 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-60-2712        TCGA-60-2713        TCGA-60-2714        TCGA-60-2715 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-60-2716        TCGA-60-2719        TCGA-60-2720        TCGA-60-2721 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-60-2722        TCGA-60-2723        TCGA-60-2724        TCGA-60-2725 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-60-2726        TCGA-66-2727        TCGA-66-2734        TCGA-66-2737 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2753        TCGA-66-2754 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-66-2755        TCGA-66-2756        TCGA-66-2757        TCGA-66-2758 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-66-2759        TCGA-66-2763        TCGA-66-2765        TCGA-66-2766 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-66-2767        TCGA-66-2768        TCGA-66-2769        TCGA-66-2770 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-66-2771        TCGA-66-2773        TCGA-66-2777        TCGA-66-2778 
  "3P GAIN MUTATED"   "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-66-2780        TCGA-66-2781        TCGA-66-2782        TCGA-66-2783 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-66-2785        TCGA-66-2786        TCGA-66-2787        TCGA-66-2788 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-66-2789        TCGA-66-2790        TCGA-66-2791        TCGA-66-2792 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-66-2793        TCGA-66-2794        TCGA-66-2795        TCGA-66-2800 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-68-7755        TCGA-68-7756        TCGA-68-7757        TCGA-68-8250 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-68-8251        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8007 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-77-8008        TCGA-77-8009        TCGA-77-8128        TCGA-77-8130 
  "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-77-8131        TCGA-77-8133        TCGA-77-8136        TCGA-77-8138 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8140        TCGA-77-8143        TCGA-77-8144 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-77-8145        TCGA-77-8148        TCGA-77-8150        TCGA-77-8153 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ        TCGA-77-A5G3 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6560        TCGA-85-6561 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
  "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-7950 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-85-8048        TCGA-85-8049        TCGA-85-8052        TCGA-85-8070 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-85-8071        TCGA-85-8072        TCGA-85-8276        TCGA-85-8277 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-85-8287        TCGA-85-8288        TCGA-85-8350        TCGA-85-8351 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-85-8352        TCGA-85-8353        TCGA-85-8354        TCGA-85-8355 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-85-8479        TCGA-85-8481        TCGA-85-8580        TCGA-85-8582 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-85-8664        TCGA-85-8666        TCGA-85-A4CL        TCGA-85-A4QR 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-85-A50M        TCGA-85-A513        TCGA-85-A53L        TCGA-90-6837 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-90-A4ED        TCGA-90-A4EE        TCGA-92-7340        TCGA-92-7341 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-92-8063        TCGA-92-8064        TCGA-92-8065        TCGA-94-7033 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-94-7557        TCGA-94-7943        TCGA-96-7544        TCGA-96-7545 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-96-8169        TCGA-96-8170        TCGA-96-A4JK        TCGA-96-A4JL 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-NC-A5HI 
"3P GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
  "3P GAIN MUTATED"   "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
  "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
  "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56V        TCGA-46-3768        TCGA-46-6025 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-5898 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-56-7730        TCGA-56-7822        TCGA-56-8503        TCGA-56-8504 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-56-8622        TCGA-56-8624        TCGA-56-8625        TCGA-56-8626 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-56-A4BY        TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-58-8386        TCGA-58-8387        TCGA-58-8388        TCGA-58-8390 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-58-8391        TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-58-A46K        TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-60-2695        TCGA-60-2696        TCGA-60-2697        TCGA-60-2698 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-60-2703        TCGA-60-2704        TCGA-60-2706        TCGA-60-2707 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-60-2708        TCGA-60-2709        TCGA-60-2710        TCGA-60-2711 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-60-2712        TCGA-60-2713        TCGA-60-2714        TCGA-60-2715 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-60-2716        TCGA-60-2719        TCGA-60-2720        TCGA-60-2721 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-60-2722        TCGA-60-2723        TCGA-60-2724        TCGA-60-2725 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-60-2726        TCGA-66-2727        TCGA-66-2734        TCGA-66-2737 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2753        TCGA-66-2754 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-66-2755        TCGA-66-2756        TCGA-66-2757        TCGA-66-2758 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-66-2759        TCGA-66-2763        TCGA-66-2765        TCGA-66-2766 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-66-2767        TCGA-66-2768        TCGA-66-2769        TCGA-66-2770 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-66-2771        TCGA-66-2773        TCGA-66-2777        TCGA-66-2778 
  "3P GAIN MUTATED"   "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-66-2780        TCGA-66-2781        TCGA-66-2782        TCGA-66-2783 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-66-2785        TCGA-66-2786        TCGA-66-2787        TCGA-66-2788 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-66-2789        TCGA-66-2790        TCGA-66-2791        TCGA-66-2792 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-66-2793        TCGA-66-2794        TCGA-66-2795        TCGA-66-2800 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-68-7755        TCGA-68-7756        TCGA-68-7757        TCGA-68-8250 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-68-8251        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8007 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-77-8008        TCGA-77-8009        TCGA-77-8128        TCGA-77-8130 
  "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-77-8131        TCGA-77-8133        TCGA-77-8136        TCGA-77-8138 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8140        TCGA-77-8143        TCGA-77-8144 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-77-8145        TCGA-77-8148        TCGA-77-8150        TCGA-77-8153 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ        TCGA-77-A5G3 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6560        TCGA-85-6561 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
  "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-7950 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-85-8048        TCGA-85-8049        TCGA-85-8052        TCGA-85-8070 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-85-8071        TCGA-85-8072        TCGA-85-8276        TCGA-85-8277 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-85-8287        TCGA-85-8288        TCGA-85-8350        TCGA-85-8351 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-85-8352        TCGA-85-8353        TCGA-85-8354        TCGA-85-8355 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-85-8479        TCGA-85-8481        TCGA-85-8580        TCGA-85-8582 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-85-8664        TCGA-85-8666        TCGA-85-A4CL        TCGA-85-A4QR 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-85-A50M        TCGA-85-A513        TCGA-85-A53L        TCGA-90-6837 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-90-A4ED        TCGA-90-A4EE        TCGA-92-7340        TCGA-92-7341 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-92-8063        TCGA-92-8064        TCGA-92-8065        TCGA-94-7033 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-94-7557        TCGA-94-7943        TCGA-96-7544        TCGA-96-7545 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-96-8169        TCGA-96-8170        TCGA-96-A4JK        TCGA-96-A4JL 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-NC-A5HI 
"3P GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
  "3P GAIN MUTATED"   "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
  "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
  "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56V        TCGA-46-3768        TCGA-46-6025 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-5898 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-56-7730        TCGA-56-7822        TCGA-56-8503        TCGA-56-8504 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-56-8622        TCGA-56-8624        TCGA-56-8625        TCGA-56-8626 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-56-A4BY        TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-58-8386        TCGA-58-8387        TCGA-58-8388        TCGA-58-8390 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-58-8391        TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-58-A46K        TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-60-2695        TCGA-60-2696        TCGA-60-2697        TCGA-60-2698 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-60-2703        TCGA-60-2704        TCGA-60-2706        TCGA-60-2707 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-60-2708        TCGA-60-2709        TCGA-60-2710        TCGA-60-2711 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-60-2712        TCGA-60-2713        TCGA-60-2714        TCGA-60-2715 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-60-2716        TCGA-60-2719        TCGA-60-2720        TCGA-60-2721 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-60-2722        TCGA-60-2723        TCGA-60-2724        TCGA-60-2725 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-60-2726        TCGA-66-2727        TCGA-66-2734        TCGA-66-2737 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2753        TCGA-66-2754 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-66-2755        TCGA-66-2756        TCGA-66-2757        TCGA-66-2758 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-66-2759        TCGA-66-2763        TCGA-66-2765        TCGA-66-2766 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-66-2767        TCGA-66-2768        TCGA-66-2769        TCGA-66-2770 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-66-2771        TCGA-66-2773        TCGA-66-2777        TCGA-66-2778 
  "3P GAIN MUTATED"   "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-66-2780        TCGA-66-2781        TCGA-66-2782        TCGA-66-2783 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-66-2785        TCGA-66-2786        TCGA-66-2787        TCGA-66-2788 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-66-2789        TCGA-66-2790        TCGA-66-2791        TCGA-66-2792 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-66-2793        TCGA-66-2794        TCGA-66-2795        TCGA-66-2800 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-68-7755        TCGA-68-7756        TCGA-68-7757        TCGA-68-8250 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-68-8251        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8007 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-77-8008        TCGA-77-8009        TCGA-77-8128        TCGA-77-8130 
  "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-77-8131        TCGA-77-8133        TCGA-77-8136        TCGA-77-8138 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8140        TCGA-77-8143        TCGA-77-8144 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-77-8145        TCGA-77-8148        TCGA-77-8150        TCGA-77-8153 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ        TCGA-77-A5G3 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6560        TCGA-85-6561 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
  "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-7950 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-85-8048        TCGA-85-8049        TCGA-85-8052        TCGA-85-8070 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-85-8071        TCGA-85-8072        TCGA-85-8276        TCGA-85-8277 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-85-8287        TCGA-85-8288        TCGA-85-8350        TCGA-85-8351 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-85-8352        TCGA-85-8353        TCGA-85-8354        TCGA-85-8355 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-85-8479        TCGA-85-8481        TCGA-85-8580        TCGA-85-8582 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-85-8664        TCGA-85-8666        TCGA-85-A4CL        TCGA-85-A4QR 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-85-A50M        TCGA-85-A513        TCGA-85-A53L        TCGA-90-6837 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-90-A4ED        TCGA-90-A4EE        TCGA-92-7340        TCGA-92-7341 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-92-8063        TCGA-92-8064        TCGA-92-8065        TCGA-94-7033 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-94-7557        TCGA-94-7943        TCGA-96-7544        TCGA-96-7545 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-96-8169        TCGA-96-8170        TCGA-96-A4JK        TCGA-96-A4JL 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-NC-A5HI 
"3P GAIN WILD-TYPE" 
[1] "hr=" "1.3"
D5V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  3P GAIN MUTATED         0       17       21        1         9        17
  3P GAIN WILD-TYPE       1       51      112        0        41        54
                   vv
clus                STAGE IIIA STAGE IIIB STAGE IV
  3P GAIN MUTATED           19          3        1
  3P GAIN WILD-TYPE         35         17        4
D5V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  3P GAIN MUTATED    21  51  11   5
  3P GAIN WILD-TYPE  72 199  33  14
D5V4, multiclass
    clus
vv   3P GAIN MUTATED 3P GAIN WILD-TYPE
  T1              21                72
  T2              51               199
  T3              11                33
  T4               5                14
                   vv
clus                 N0  N1  N2  N3
  3P GAIN MUTATED    49  25  12   0
  3P GAIN WILD-TYPE 204  84  22   5
D5V5, multiclass
    clus
vv   3P GAIN MUTATED 3P GAIN WILD-TYPE
  N0              49               204
  N1              25                84
  N2              12                22
  N3               0                 5
                   vv
clus                 M0  M1  MX
  3P GAIN MUTATED    78   1   8
  3P GAIN WILD-TYPE 270   4  39
D5V6, multiclass
    clus
vv   3P GAIN MUTATED 3P GAIN WILD-TYPE
  M0              78               270
  M1               1                 4
  MX               8                39
D5V7, binary
                   cls
clus                  0   1
  3P GAIN MUTATED    17  71
  3P GAIN WILD-TYPE  84 234
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3P GAIN MUTATED     17   71
  3P GAIN WILD-TYPE   84  234
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  FEMALE              17                84
  MALE                71               234
D5V8, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  3P GAIN MUTATED                                       2
  3P GAIN WILD-TYPE                                    10
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  3P GAIN MUTATED                                        0
  3P GAIN WILD-TYPE                                      6
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  3P GAIN MUTATED                                         0
  3P GAIN WILD-TYPE                                       1
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  3P GAIN MUTATED                                                            86
  3P GAIN WILD-TYPE                                                         301
D5V9, multiclass
                                                             clus
vv                                                            3P GAIN MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     2
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                    0
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              86
                                                             clus
vv                                                            3P GAIN WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      10
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                      6
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               301
D5V10, binary
                   cls
clus                  0   1
  3P GAIN MUTATED     3  85
  3P GAIN WILD-TYPE   9 309
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3P GAIN MUTATED      3   85
  3P GAIN WILD-TYPE    9  309
     clus
vv    3P GAIN MUTATED 3P GAIN WILD-TYPE
  NO                3                 9
  YES              85               309
D5V11, continuous
D5V12, continuous
                   vv
clus                 R0  R1  R2  RX
  3P GAIN MUTATED    67   3   1   4
  3P GAIN WILD-TYPE 263   5   3  14
D5V13, multiclass
    clus
vv   3P GAIN MUTATED 3P GAIN WILD-TYPE
  R0              67               263
  R1               3                 5
  R2               1                 3
  RX               4                14

Clustering(6) Variable = 3Q GAIN MUTATION ANALYSIS
D6V1, survival
                   sevent
clus2                 0   1
  3Q GAIN MUTATED   151  88
  3Q GAIN WILD-TYPE  88  50
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
              239               138 
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
               88                50 
$`3Q GAIN MUTATED`
TCGA-18-3407 TCGA-18-3409 TCGA-18-3410 TCGA-18-3414 TCGA-18-3417 TCGA-18-3419 
        4.47        79.46         4.80        13.02        24.92         1.61 
TCGA-18-3421 TCGA-18-4086 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 
       43.76         2.79        27.16       119.54        46.88        60.89 
TCGA-21-1077 TCGA-21-1080 TCGA-21-1081 TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 
       34.78       122.43         9.30         8.78        31.63        88.08 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-21-A5DI TCGA-22-0940 TCGA-22-1000 
       41.69        33.93        10.82        32.19        19.99        14.93 
TCGA-22-1002 TCGA-22-1012 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 
        4.31        14.10        20.45        35.08        24.13        38.17 
TCGA-22-4601 TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 TCGA-22-5472 
       34.75        32.02        19.30         9.53        11.77        64.90 
TCGA-22-5477 TCGA-22-5479 TCGA-22-5480 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 
       44.22        54.28        71.34        30.08        62.86        56.32 
TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 
        7.63       114.05        97.94        43.10       173.79       103.53 
TCGA-33-4586 TCGA-33-4587 TCGA-33-4589 TCGA-34-2596 TCGA-34-2600 TCGA-34-2604 
       14.07        54.44        10.98         2.63        61.61        31.50 
TCGA-34-2608 TCGA-34-2609 TCGA-34-5232 TCGA-34-5236 TCGA-34-5240 TCGA-34-5241 
       32.84        31.23        67.79         9.04        12.00        14.07 
TCGA-34-5927 TCGA-34-5928 TCGA-34-7107 TCGA-37-3783 TCGA-37-4130 TCGA-37-4132 
       30.94        18.12         1.08         3.95         8.09         7.46 
TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 
        7.82         6.81         0.39         3.39        74.07        44.71 
TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 
       68.58        55.17        70.03         1.71        24.33         1.94 
TCGA-39-5031 TCGA-39-5035 TCGA-39-5037 TCGA-39-5040 TCGA-43-2576 TCGA-43-2578 
       27.35        15.58        35.70        17.06        40.21        22.49 
TCGA-43-3394 TCGA-43-3920 TCGA-43-5670 TCGA-43-6143 TCGA-43-6771 TCGA-43-7657 
       27.02        33.07        18.05        12.36         5.42         1.58 
TCGA-43-7658 TCGA-43-8118 TCGA-43-A56V TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 
       66.51         2.93         5.06         9.96        10.65        13.87 
TCGA-51-4080 TCGA-51-4081 TCGA-52-7809 TCGA-52-7810 TCGA-56-5897 TCGA-56-5898 
        0.39        29.95         5.42        30.31         0.10        18.25 
TCGA-56-7223 TCGA-56-7580 TCGA-56-7730 TCGA-56-7822 TCGA-56-8504 TCGA-56-8624 
        0.99         1.32         0.20         0.03         5.82         1.18 
TCGA-56-8625 TCGA-56-8626 TCGA-56-8628 TCGA-56-8629 TCGA-56-A49D TCGA-56-A4BY 
        2.07         0.56         0.53         1.12         0.99         0.99 
TCGA-56-A4ZJ TCGA-56-A4ZK TCGA-56-A5DS TCGA-58-8386 TCGA-58-8387 TCGA-58-8390 
        1.02         0.13         0.26         0.03        13.25        29.95 
TCGA-58-8393 TCGA-58-A46J TCGA-58-A46K TCGA-58-A46M TCGA-58-A46N TCGA-60-2695 
       34.78        64.87        34.36        23.24        17.72        21.07 
TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 TCGA-60-2710 
       96.82        37.94        92.71        21.70        80.42        66.51 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2721 TCGA-60-2723 TCGA-60-2724 
        9.01        56.91        35.34        32.28        35.90        23.57 
TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2755 
       11.77        16.96        43.10        21.07         0.99         0.92 
TCGA-66-2756 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 
        0.99        20.98        25.02         0.99         2.01         1.02 
TCGA-66-2767 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 
        2.01        23.01        19.00         3.02         2.01        19.00 
TCGA-66-2780 TCGA-66-2781 TCGA-66-2783 TCGA-66-2786 TCGA-66-2787 TCGA-66-2789 
       12.03         3.98        24.95        25.97        40.01         4.04 
TCGA-66-2790 TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 TCGA-68-8250 TCGA-68-8251 
       22.98        49.05         2.73         6.64         8.02         3.12 
TCGA-77-6842 TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 
       29.56        23.28        11.18        89.95        20.78         0.49 
TCGA-77-7142 TCGA-77-7335 TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 TCGA-77-8008 
       42.25        70.09         0.16        46.78        15.75        86.76 
TCGA-77-8009 TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 
       53.95        53.92        39.09        17.69       104.09        11.54 
TCGA-77-8143 TCGA-77-8145 TCGA-77-8148 TCGA-77-8150 TCGA-77-A5G3 TCGA-77-A5GB 
       26.40         6.97         9.63        54.41       117.57        30.81 
TCGA-77-A5GH TCGA-85-6560 TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 TCGA-85-7697 
       23.44         0.36         0.79         1.12         0.59         0.33 
TCGA-85-7843 TCGA-85-7844 TCGA-85-7950 TCGA-85-8049 TCGA-85-8052 TCGA-85-8072 
        1.15         1.25         1.97         1.97         0.53         1.18 
TCGA-85-8276 TCGA-85-8277 TCGA-85-8287 TCGA-85-8288 TCGA-85-8350 TCGA-85-8351 
        0.43         0.36         1.45         1.78         1.97         1.81 
TCGA-85-8352 TCGA-85-8353 TCGA-85-8580 TCGA-85-8582 TCGA-85-8664 TCGA-85-A4QR 
        2.20         1.78        14.60        13.91         0.10         0.82 
TCGA-90-7766 TCGA-90-7767 TCGA-90-7964 TCGA-90-A4EE TCGA-92-8063 TCGA-92-8064 
        9.50         2.93        14.07        10.88         4.01         5.26 
TCGA-92-8065 TCGA-94-7033 TCGA-94-7943 TCGA-96-7544 TCGA-96-7545 TCGA-96-8170 
        2.27         2.86        11.70        39.88        44.15         6.90 
TCGA-96-A4JK TCGA-98-8020 TCGA-98-8021 TCGA-98-8022 TCGA-J1-A4AH TCGA-L3-A4E7 
        8.98         2.73        13.58         7.33         7.30         1.15 
TCGA-L3-A524 TCGA-LA-A446 TCGA-MF-A522 TCGA-NC-A5HG TCGA-NC-A5HI 
       14.76         1.18         3.02        50.86        37.32 

$`3Q GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3408 TCGA-18-3411 TCGA-18-3412 TCGA-18-3415 TCGA-18-3416 
       12.16        81.07        46.52        11.34        59.51        28.34 
TCGA-18-4083 TCGA-18-4721 TCGA-18-5592 TCGA-21-1072 TCGA-21-1075 TCGA-21-1078 
        6.15        90.51         3.02        99.16        70.13        15.55 
TCGA-21-1079 TCGA-21-1082 TCGA-22-0944 TCGA-22-1005 TCGA-22-1011 TCGA-22-1016 
       31.69       119.80         7.33        64.21         1.74        27.02 
TCGA-22-1017 TCGA-22-4594 TCGA-22-4596 TCGA-22-4604 TCGA-22-5471 TCGA-22-5473 
       48.82        48.33         0.56        13.12        31.73        63.52 
TCGA-22-5474 TCGA-22-5478 TCGA-22-5481 TCGA-22-5482 TCGA-22-5483 TCGA-22-5492 
       14.60         0.79        79.20        11.74        18.84        16.60 
TCGA-22-A5C4 TCGA-33-4583 TCGA-33-6737 TCGA-33-6738 TCGA-34-2605 TCGA-34-5231 
        0.95       141.34        19.76        26.99        28.96        50.24 
TCGA-34-5234 TCGA-34-5239 TCGA-34-5929 TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 
       56.38        23.24         4.96         0.43         0.39         6.54 
TCGA-39-5011 TCGA-39-5027 TCGA-39-5034 TCGA-39-5036 TCGA-39-5039 TCGA-43-2581 
       47.80        60.76        36.39        35.64        17.88        38.66 
TCGA-43-5668 TCGA-43-6647 TCGA-43-6770 TCGA-43-6773 TCGA-43-7656 TCGA-43-8115 
       11.47        24.89        10.19         3.78         6.97         6.64 
TCGA-43-8116 TCGA-43-A474 TCGA-43-A475 TCGA-51-4079 TCGA-52-7622 TCGA-52-7811 
        6.35        11.61         9.73         0.39        17.79         8.75 
TCGA-52-7812 TCGA-56-1622 TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 
       27.45        28.93         2.04         1.02         0.99         0.43 
TCGA-56-7579 TCGA-56-7582 TCGA-56-8503 TCGA-56-8622 TCGA-56-A4BX TCGA-58-8388 
        1.45         0.85         1.35         1.78         1.51        12.43 
TCGA-58-8391 TCGA-58-8392 TCGA-58-A46L TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 
       71.24        16.47        36.59         3.58        12.23        10.22 
TCGA-60-2709 TCGA-60-2711 TCGA-60-2714 TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 
       49.48        41.39        50.33        48.49        42.61         3.16 
TCGA-60-2722 TCGA-60-2725 TCGA-66-2737 TCGA-66-2753 TCGA-66-2754 TCGA-66-2757 
       29.85        26.79         2.01         1.02         2.01         0.99 
TCGA-66-2768 TCGA-66-2769 TCGA-66-2782 TCGA-66-2785 TCGA-66-2788 TCGA-66-2791 
        2.01         7.07        12.00         1.94        22.98         5.03 
TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-68-7757 TCGA-77-6843 
       30.02        10.06        54.08         4.01         6.94        73.08 
TCGA-77-6844 TCGA-77-7337 TCGA-77-8007 TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 
       75.09       106.95         6.51        37.81        82.92        12.59 
TCGA-77-8144 TCGA-77-8153 TCGA-77-8154 TCGA-77-8156 TCGA-77-A5FZ TCGA-85-7698 
       27.39        55.33        35.90         0.33       126.18         1.61 
TCGA-85-7699 TCGA-85-8048 TCGA-85-8070 TCGA-85-8071 TCGA-85-8354 TCGA-85-8355 
        0.03         0.85        16.77        14.07         2.01         0.66 
TCGA-85-8479 TCGA-85-8481 TCGA-85-8666 TCGA-85-A4CL TCGA-85-A50M TCGA-85-A513 
        0.72         0.66        15.58         0.46         0.62         0.79 
TCGA-85-A53L TCGA-90-6837 TCGA-90-7769 TCGA-90-A4ED TCGA-92-7340 TCGA-92-7341 
        0.43        24.89        11.77         8.02         2.70         3.48 
TCGA-94-7557 TCGA-96-8169 TCGA-96-A4JL TCGA-98-7454 TCGA-98-8023 TCGA-NC-A5HE 
        0.16         6.18         6.02         8.42        10.13        56.61 

  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
             0.03              0.03 
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
           173.79            141.34 
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
            14.07             12.08 
[1] "0.0 - 173.8 (14.1)" "0.0 - 141.3 (12.1)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56V        TCGA-46-3768        TCGA-46-6025 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-5898 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-56-7730        TCGA-56-7822        TCGA-56-8503        TCGA-56-8504 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-56-8622        TCGA-56-8624        TCGA-56-8625        TCGA-56-8626 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-56-A4BY        TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-58-8386        TCGA-58-8387        TCGA-58-8388        TCGA-58-8390 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-58-8391        TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-58-A46K        TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-60-2695        TCGA-60-2696        TCGA-60-2697        TCGA-60-2698 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-60-2703        TCGA-60-2704        TCGA-60-2706        TCGA-60-2707 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-60-2708        TCGA-60-2709        TCGA-60-2710        TCGA-60-2711 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-60-2712        TCGA-60-2713        TCGA-60-2714        TCGA-60-2715 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-60-2716        TCGA-60-2719        TCGA-60-2720        TCGA-60-2721 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-60-2722        TCGA-60-2723        TCGA-60-2724        TCGA-60-2725 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-60-2726        TCGA-66-2727        TCGA-66-2734        TCGA-66-2737 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2753        TCGA-66-2754 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-66-2755        TCGA-66-2756        TCGA-66-2757        TCGA-66-2758 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-66-2759        TCGA-66-2763        TCGA-66-2765        TCGA-66-2766 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-66-2767        TCGA-66-2768        TCGA-66-2769        TCGA-66-2770 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-66-2771        TCGA-66-2773        TCGA-66-2777        TCGA-66-2778 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-66-2780        TCGA-66-2781        TCGA-66-2782        TCGA-66-2783 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-66-2785        TCGA-66-2786        TCGA-66-2787        TCGA-66-2788 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-66-2789        TCGA-66-2790        TCGA-66-2791        TCGA-66-2792 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-66-2793        TCGA-66-2794        TCGA-66-2795        TCGA-66-2800 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-68-7755        TCGA-68-7756        TCGA-68-7757        TCGA-68-8250 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-68-8251        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8007 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-77-8008        TCGA-77-8009        TCGA-77-8128        TCGA-77-8130 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-77-8131        TCGA-77-8133        TCGA-77-8136        TCGA-77-8138 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-77-8139        TCGA-77-8140        TCGA-77-8143        TCGA-77-8144 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-77-8145        TCGA-77-8148        TCGA-77-8150        TCGA-77-8153 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ        TCGA-77-A5G3 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6560        TCGA-85-6561 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-7950 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-85-8048        TCGA-85-8049        TCGA-85-8052        TCGA-85-8070 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-85-8071        TCGA-85-8072        TCGA-85-8276        TCGA-85-8277 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-85-8287        TCGA-85-8288        TCGA-85-8350        TCGA-85-8351 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-85-8352        TCGA-85-8353        TCGA-85-8354        TCGA-85-8355 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-85-8479        TCGA-85-8481        TCGA-85-8580        TCGA-85-8582 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-85-8664        TCGA-85-8666        TCGA-85-A4CL        TCGA-85-A4QR 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-85-A50M        TCGA-85-A513        TCGA-85-A53L        TCGA-90-6837 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-90-A4ED        TCGA-90-A4EE        TCGA-92-7340        TCGA-92-7341 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-92-8063        TCGA-92-8064        TCGA-92-8065        TCGA-94-7033 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-94-7557        TCGA-94-7943        TCGA-96-7544        TCGA-96-7545 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-96-8169        TCGA-96-8170        TCGA-96-A4JK        TCGA-96-A4JL 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-NC-A5HI 
  "3Q GAIN MUTATED" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56V        TCGA-46-3768        TCGA-46-6025 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-5898 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-56-7730        TCGA-56-7822        TCGA-56-8503        TCGA-56-8504 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-56-8622        TCGA-56-8624        TCGA-56-8625        TCGA-56-8626 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-56-A4BY        TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-58-8386        TCGA-58-8387        TCGA-58-8388        TCGA-58-8390 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-58-8391        TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-58-A46K        TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-60-2695        TCGA-60-2696        TCGA-60-2697        TCGA-60-2698 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-60-2703        TCGA-60-2704        TCGA-60-2706        TCGA-60-2707 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-60-2708        TCGA-60-2709        TCGA-60-2710        TCGA-60-2711 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-60-2712        TCGA-60-2713        TCGA-60-2714        TCGA-60-2715 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-60-2716        TCGA-60-2719        TCGA-60-2720        TCGA-60-2721 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-60-2722        TCGA-60-2723        TCGA-60-2724        TCGA-60-2725 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-60-2726        TCGA-66-2727        TCGA-66-2734        TCGA-66-2737 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2753        TCGA-66-2754 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-66-2755        TCGA-66-2756        TCGA-66-2757        TCGA-66-2758 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-66-2759        TCGA-66-2763        TCGA-66-2765        TCGA-66-2766 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-66-2767        TCGA-66-2768        TCGA-66-2769        TCGA-66-2770 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-66-2771        TCGA-66-2773        TCGA-66-2777        TCGA-66-2778 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-66-2780        TCGA-66-2781        TCGA-66-2782        TCGA-66-2783 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-66-2785        TCGA-66-2786        TCGA-66-2787        TCGA-66-2788 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-66-2789        TCGA-66-2790        TCGA-66-2791        TCGA-66-2792 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-66-2793        TCGA-66-2794        TCGA-66-2795        TCGA-66-2800 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-68-7755        TCGA-68-7756        TCGA-68-7757        TCGA-68-8250 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-68-8251        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8007 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-77-8008        TCGA-77-8009        TCGA-77-8128        TCGA-77-8130 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-77-8131        TCGA-77-8133        TCGA-77-8136        TCGA-77-8138 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-77-8139        TCGA-77-8140        TCGA-77-8143        TCGA-77-8144 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-77-8145        TCGA-77-8148        TCGA-77-8150        TCGA-77-8153 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ        TCGA-77-A5G3 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6560        TCGA-85-6561 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-7950 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-85-8048        TCGA-85-8049        TCGA-85-8052        TCGA-85-8070 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-85-8071        TCGA-85-8072        TCGA-85-8276        TCGA-85-8277 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-85-8287        TCGA-85-8288        TCGA-85-8350        TCGA-85-8351 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-85-8352        TCGA-85-8353        TCGA-85-8354        TCGA-85-8355 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-85-8479        TCGA-85-8481        TCGA-85-8580        TCGA-85-8582 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-85-8664        TCGA-85-8666        TCGA-85-A4CL        TCGA-85-A4QR 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-85-A50M        TCGA-85-A513        TCGA-85-A53L        TCGA-90-6837 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-90-A4ED        TCGA-90-A4EE        TCGA-92-7340        TCGA-92-7341 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-92-8063        TCGA-92-8064        TCGA-92-8065        TCGA-94-7033 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-94-7557        TCGA-94-7943        TCGA-96-7544        TCGA-96-7545 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-96-8169        TCGA-96-8170        TCGA-96-A4JK        TCGA-96-A4JL 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-NC-A5HI 
  "3Q GAIN MUTATED" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56V        TCGA-46-3768        TCGA-46-6025 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-5898 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-56-7730        TCGA-56-7822        TCGA-56-8503        TCGA-56-8504 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-56-8622        TCGA-56-8624        TCGA-56-8625        TCGA-56-8626 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-56-A4BY        TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-58-8386        TCGA-58-8387        TCGA-58-8388        TCGA-58-8390 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-58-8391        TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-58-A46K        TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-60-2695        TCGA-60-2696        TCGA-60-2697        TCGA-60-2698 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-60-2703        TCGA-60-2704        TCGA-60-2706        TCGA-60-2707 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-60-2708        TCGA-60-2709        TCGA-60-2710        TCGA-60-2711 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-60-2712        TCGA-60-2713        TCGA-60-2714        TCGA-60-2715 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-60-2716        TCGA-60-2719        TCGA-60-2720        TCGA-60-2721 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-60-2722        TCGA-60-2723        TCGA-60-2724        TCGA-60-2725 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-60-2726        TCGA-66-2727        TCGA-66-2734        TCGA-66-2737 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2753        TCGA-66-2754 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-66-2755        TCGA-66-2756        TCGA-66-2757        TCGA-66-2758 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-66-2759        TCGA-66-2763        TCGA-66-2765        TCGA-66-2766 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-66-2767        TCGA-66-2768        TCGA-66-2769        TCGA-66-2770 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-66-2771        TCGA-66-2773        TCGA-66-2777        TCGA-66-2778 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-66-2780        TCGA-66-2781        TCGA-66-2782        TCGA-66-2783 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-66-2785        TCGA-66-2786        TCGA-66-2787        TCGA-66-2788 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-66-2789        TCGA-66-2790        TCGA-66-2791        TCGA-66-2792 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-66-2793        TCGA-66-2794        TCGA-66-2795        TCGA-66-2800 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-68-7755        TCGA-68-7756        TCGA-68-7757        TCGA-68-8250 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-68-8251        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8007 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-77-8008        TCGA-77-8009        TCGA-77-8128        TCGA-77-8130 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-77-8131        TCGA-77-8133        TCGA-77-8136        TCGA-77-8138 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-77-8139        TCGA-77-8140        TCGA-77-8143        TCGA-77-8144 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-77-8145        TCGA-77-8148        TCGA-77-8150        TCGA-77-8153 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ        TCGA-77-A5G3 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6560        TCGA-85-6561 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-7950 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-85-8048        TCGA-85-8049        TCGA-85-8052        TCGA-85-8070 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-85-8071        TCGA-85-8072        TCGA-85-8276        TCGA-85-8277 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-85-8287        TCGA-85-8288        TCGA-85-8350        TCGA-85-8351 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-85-8352        TCGA-85-8353        TCGA-85-8354        TCGA-85-8355 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-85-8479        TCGA-85-8481        TCGA-85-8580        TCGA-85-8582 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-85-8664        TCGA-85-8666        TCGA-85-A4CL        TCGA-85-A4QR 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-85-A50M        TCGA-85-A513        TCGA-85-A53L        TCGA-90-6837 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-90-A4ED        TCGA-90-A4EE        TCGA-92-7340        TCGA-92-7341 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-92-8063        TCGA-92-8064        TCGA-92-8065        TCGA-94-7033 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-94-7557        TCGA-94-7943        TCGA-96-7544        TCGA-96-7545 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-96-8169        TCGA-96-8170        TCGA-96-A4JK        TCGA-96-A4JL 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-NC-A5HI 
  "3Q GAIN MUTATED" 
[1] "hr=" "1"  
D6V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  3Q GAIN MUTATED         1       46       82        1        27        44
  3Q GAIN WILD-TYPE       0       22       51        0        23        27
                   vv
clus                STAGE IIIA STAGE IIIB STAGE IV
  3Q GAIN MUTATED           38         12        5
  3Q GAIN WILD-TYPE         16          8        0
D6V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  3Q GAIN MUTATED    61 158  27  11
  3Q GAIN WILD-TYPE  32  92  17   8
D6V4, multiclass
    clus
vv   3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  T1              61                32
  T2             158                92
  T3              27                17
  T4              11                 8
                   vv
clus                 N0  N1  N2  N3
  3Q GAIN MUTATED   157  71  22   4
  3Q GAIN WILD-TYPE  96  38  12   1
D6V5, multiclass
    clus
vv   3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  N0             157                96
  N1              71                38
  N2              22                12
  N3               4                 1
                   vv
clus                 M0  M1  MX
  3Q GAIN MUTATED   218   5  32
  3Q GAIN WILD-TYPE 130   0  15
D6V6, multiclass
    clus
vv   3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  M0             218               130
  M1               5                 0
  MX              32                15
D6V7, binary
                   cls
clus                  0   1
  3Q GAIN MUTATED    67 190
  3Q GAIN WILD-TYPE  34 115
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3Q GAIN MUTATED     67  190
  3Q GAIN WILD-TYPE   34  115
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  FEMALE              67                34
  MALE               190               115
D6V8, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  3Q GAIN MUTATED                                      10
  3Q GAIN WILD-TYPE                                     2
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  3Q GAIN MUTATED                                        0
  3Q GAIN WILD-TYPE                                      6
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  3Q GAIN MUTATED                                         1
  3Q GAIN WILD-TYPE                                       0
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  3Q GAIN MUTATED                                                           246
  3Q GAIN WILD-TYPE                                                         141
D6V9, multiclass
                                                             clus
vv                                                            3Q GAIN MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    10
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                    0
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                   1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             246
                                                             clus
vv                                                            3Q GAIN WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       2
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                      6
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                     0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               141
D6V10, binary
                   cls
clus                  0   1
  3Q GAIN MUTATED     9 248
  3Q GAIN WILD-TYPE   3 146
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3Q GAIN MUTATED      9  248
  3Q GAIN WILD-TYPE    3  146
     clus
vv    3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  NO                9                 3
  YES             248               146
D6V11, continuous
D6V12, continuous
                   vv
clus                 R0  R1  R2  RX
  3Q GAIN MUTATED   208   4   3  12
  3Q GAIN WILD-TYPE 122   4   1   6
D6V13, multiclass
    clus
vv   3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  R0             208               122
  R1               4                 4
  R2               3                 1
  RX              12                 6

Clustering(7) Variable = 4P GAIN MUTATION ANALYSIS
D7V1, survival
                   sevent
clus2                 0   1
  4P GAIN MUTATED    10  12
  4P GAIN WILD-TYPE 229 126
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
               22               355 
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
               12               126 
$`4P GAIN MUTATED`
TCGA-18-3409 TCGA-18-3410 TCGA-22-1017 TCGA-22-4591 TCGA-22-4601 TCGA-22-5478 
       79.46         4.80        48.82        20.45        34.75         0.79 
TCGA-22-A5C4 TCGA-34-2596 TCGA-34-2609 TCGA-37-4130 TCGA-43-2576 TCGA-43-3920 
        0.95         2.63        31.23         8.09        40.21        33.07 
TCGA-43-8116 TCGA-56-1622 TCGA-60-2715 TCGA-66-2763 TCGA-68-8250 TCGA-77-6842 
        6.35        28.93        35.34         0.99         8.02        29.56 
TCGA-77-8007 TCGA-90-7767 TCGA-96-7545 TCGA-98-8022 
        6.51         2.93        44.15         7.33 

$`4P GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3411 TCGA-18-3412 TCGA-18-3414 
       12.16         4.47        81.07        46.52        11.34        13.02 
TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 
       59.51        28.34        24.92         1.61        43.76         6.15 
TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 
        2.79        90.51         3.02        27.16       119.54        46.88 
TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1079 
       99.16        70.13        60.89        34.78        15.55        31.69 
TCGA-21-1080 TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 
      122.43         9.30       119.80         8.78        31.63        88.08 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-21-A5DI TCGA-22-0940 TCGA-22-0944 
       41.69        33.93        10.82        32.19        19.99         7.33 
TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 
       14.93         4.31        64.21         1.74        14.10        27.02 
TCGA-22-4593 TCGA-22-4594 TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 TCGA-22-4604 
       35.08        48.33        24.13         0.56        38.17        13.12 
TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 
       32.02        19.30         9.53        11.77        31.73        64.90 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 
       63.52        14.60        44.22        54.28        71.34        79.20 
TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 
       11.74        18.84        30.08        62.86        56.32        16.60 
TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 
        7.63       114.05        97.94        43.10       173.79       103.53 
TCGA-33-4583 TCGA-33-4586 TCGA-33-4587 TCGA-33-4589 TCGA-33-6737 TCGA-33-6738 
      141.34        14.07        54.44        10.98        19.76        26.99 
TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 
       61.61        31.50        28.96        32.84        50.24        67.79 
TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 
       56.38         9.04        23.24        12.00        14.07        30.94 
TCGA-34-5928 TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 
       18.12         4.96         1.08         3.95         0.43         0.39 
TCGA-37-4129 TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 
        6.54         7.46         7.82         6.81         0.39         3.39 
TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 
       47.80        74.07        44.71        68.58        55.17        70.03 
TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 
       60.76         1.71        24.33         1.94        27.35        36.39 
TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-39-5040 TCGA-43-2578 
       15.58        35.64        35.70        17.88        17.06        22.49 
TCGA-43-2581 TCGA-43-3394 TCGA-43-5668 TCGA-43-5670 TCGA-43-6143 TCGA-43-6647 
       38.66        27.02        11.47        18.05        12.36        24.89 
TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 
       10.19         5.42         3.78         6.97         1.58        66.51 
TCGA-43-8115 TCGA-43-8118 TCGA-43-A474 TCGA-43-A475 TCGA-43-A56V TCGA-46-3768 
        6.64         2.93        11.61         9.73         5.06         9.96 
TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 
       10.65        13.87         0.39         0.39        29.95        17.79 
TCGA-52-7809 TCGA-52-7810 TCGA-52-7811 TCGA-52-7812 TCGA-56-5897 TCGA-56-5898 
        5.42        30.31         8.75        27.45         0.10        18.25 
TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 
        2.04         1.02         0.99         0.43         0.99         1.45 
TCGA-56-7580 TCGA-56-7582 TCGA-56-7730 TCGA-56-7822 TCGA-56-8503 TCGA-56-8504 
        1.32         0.85         0.20         0.03         1.35         5.82 
TCGA-56-8622 TCGA-56-8624 TCGA-56-8625 TCGA-56-8626 TCGA-56-8628 TCGA-56-8629 
        1.78         1.18         2.07         0.56         0.53         1.12 
TCGA-56-A49D TCGA-56-A4BX TCGA-56-A4BY TCGA-56-A4ZJ TCGA-56-A4ZK TCGA-56-A5DS 
        0.99         1.51         0.99         1.02         0.13         0.26 
TCGA-58-8386 TCGA-58-8387 TCGA-58-8388 TCGA-58-8390 TCGA-58-8391 TCGA-58-8392 
        0.03        13.25        12.43        29.95        71.24        16.47 
TCGA-58-8393 TCGA-58-A46J TCGA-58-A46K TCGA-58-A46L TCGA-58-A46M TCGA-58-A46N 
       34.78        64.87        34.36        36.59        23.24        17.72 
TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 
       21.07         3.58        12.23        10.22        96.82        37.94 
TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 
       92.71        21.70        80.42        49.48        66.51        41.39 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 
        9.01        56.91        50.33        48.49        42.61         3.16 
TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 
       32.28        29.85        35.90        23.57        26.79        11.77 
TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 
       16.96        43.10         2.01        21.07         0.99         1.02 
TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 
        2.01         0.92         0.99         0.99        20.98        25.02 
TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 TCGA-66-2770 
        2.01         1.02         2.01         2.01         7.07        23.01 
TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 
       19.00         3.02         2.01        19.00        12.03         3.98 
TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 
       12.00        24.95         1.94        25.97        40.01        22.98 
TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 
        4.04        22.98         5.03        30.02        10.06        54.08 
TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 TCGA-68-7757 TCGA-68-8251 
        4.01        49.05         2.73         6.64         6.94         3.12 
TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 TCGA-77-7140 
       73.08        75.09        23.28        11.18        89.95        20.78 
TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 
        0.49        42.25        70.09       106.95         0.16        46.78 
TCGA-77-7465 TCGA-77-8008 TCGA-77-8009 TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 
       15.75        86.76        53.95        37.81        82.92        12.59 
TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 TCGA-77-8143 
       53.92        39.09        17.69       104.09        11.54        26.40 
TCGA-77-8144 TCGA-77-8145 TCGA-77-8148 TCGA-77-8150 TCGA-77-8153 TCGA-77-8154 
       27.39         6.97         9.63        54.41        55.33        35.90 
TCGA-77-8156 TCGA-77-A5FZ TCGA-77-A5G3 TCGA-77-A5GB TCGA-77-A5GH TCGA-85-6560 
        0.33       126.18       117.57        30.81        23.44         0.36 
TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 TCGA-85-7697 TCGA-85-7698 TCGA-85-7699 
        0.79         1.12         0.59         0.33         1.61         0.03 
TCGA-85-7843 TCGA-85-7844 TCGA-85-7950 TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 
        1.15         1.25         1.97         0.85         1.97         0.53 
TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 TCGA-85-8276 TCGA-85-8277 TCGA-85-8287 
       16.77        14.07         1.18         0.43         0.36         1.45 
TCGA-85-8288 TCGA-85-8350 TCGA-85-8351 TCGA-85-8352 TCGA-85-8353 TCGA-85-8354 
        1.78         1.97         1.81         2.20         1.78         2.01 
TCGA-85-8355 TCGA-85-8479 TCGA-85-8481 TCGA-85-8580 TCGA-85-8582 TCGA-85-8664 
        0.66         0.72         0.66        14.60        13.91         0.10 
TCGA-85-8666 TCGA-85-A4CL TCGA-85-A4QR TCGA-85-A50M TCGA-85-A513 TCGA-85-A53L 
       15.58         0.46         0.82         0.62         0.79         0.43 
TCGA-90-6837 TCGA-90-7766 TCGA-90-7769 TCGA-90-7964 TCGA-90-A4ED TCGA-90-A4EE 
       24.89         9.50        11.77        14.07         8.02        10.88 
TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 
        2.70         3.48         4.01         5.26         2.27         2.86 
TCGA-94-7557 TCGA-94-7943 TCGA-96-7544 TCGA-96-8169 TCGA-96-8170 TCGA-96-A4JK 
        0.16        11.70        39.88         6.18         6.90         8.98 
TCGA-96-A4JL TCGA-98-7454 TCGA-98-8020 TCGA-98-8021 TCGA-98-8023 TCGA-J1-A4AH 
        6.02         8.42         2.73        13.58        10.13         7.30 
TCGA-L3-A4E7 TCGA-L3-A524 TCGA-LA-A446 TCGA-MF-A522 TCGA-NC-A5HE TCGA-NC-A5HG 
        1.15        14.76         1.18         3.02        56.61        50.86 
TCGA-NC-A5HI 
       37.32 

  4P GAIN MUTATED 4P GAIN WILD-TYPE 
             0.79              0.03 
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
            79.46            173.79 
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
            14.27             13.58 
[1] "0.8 - 79.5 (14.3)"  "0.0 - 173.8 (13.6)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
  "4P GAIN MUTATED"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56V        TCGA-46-3768        TCGA-46-6025 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-5898 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-56-7730        TCGA-56-7822        TCGA-56-8503        TCGA-56-8504 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-56-8622        TCGA-56-8624        TCGA-56-8625        TCGA-56-8626 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-56-A4BY        TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-58-8386        TCGA-58-8387        TCGA-58-8388        TCGA-58-8390 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-58-8391        TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-58-A46K        TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-60-2695        TCGA-60-2696        TCGA-60-2697        TCGA-60-2698 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-60-2703        TCGA-60-2704        TCGA-60-2706        TCGA-60-2707 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-60-2708        TCGA-60-2709        TCGA-60-2710        TCGA-60-2711 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-60-2712        TCGA-60-2713        TCGA-60-2714        TCGA-60-2715 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-60-2716        TCGA-60-2719        TCGA-60-2720        TCGA-60-2721 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-60-2722        TCGA-60-2723        TCGA-60-2724        TCGA-60-2725 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-60-2726        TCGA-66-2727        TCGA-66-2734        TCGA-66-2737 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2753        TCGA-66-2754 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2755        TCGA-66-2756        TCGA-66-2757        TCGA-66-2758 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2759        TCGA-66-2763        TCGA-66-2765        TCGA-66-2766 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2767        TCGA-66-2768        TCGA-66-2769        TCGA-66-2770 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2771        TCGA-66-2773        TCGA-66-2777        TCGA-66-2778 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2780        TCGA-66-2781        TCGA-66-2782        TCGA-66-2783 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2785        TCGA-66-2786        TCGA-66-2787        TCGA-66-2788 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2789        TCGA-66-2790        TCGA-66-2791        TCGA-66-2792 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2793        TCGA-66-2794        TCGA-66-2795        TCGA-66-2800 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-68-7755        TCGA-68-7756        TCGA-68-7757        TCGA-68-8250 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-68-8251        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8007 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-77-8008        TCGA-77-8009        TCGA-77-8128        TCGA-77-8130 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-77-8131        TCGA-77-8133        TCGA-77-8136        TCGA-77-8138 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8140        TCGA-77-8143        TCGA-77-8144 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-77-8145        TCGA-77-8148        TCGA-77-8150        TCGA-77-8153 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ        TCGA-77-A5G3 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6560        TCGA-85-6561 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-7950 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-85-8048        TCGA-85-8049        TCGA-85-8052        TCGA-85-8070 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-85-8071        TCGA-85-8072        TCGA-85-8276        TCGA-85-8277 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-85-8287        TCGA-85-8288        TCGA-85-8350        TCGA-85-8351 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-85-8352        TCGA-85-8353        TCGA-85-8354        TCGA-85-8355 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-85-8479        TCGA-85-8481        TCGA-85-8580        TCGA-85-8582 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-85-8664        TCGA-85-8666        TCGA-85-A4CL        TCGA-85-A4QR 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-85-A50M        TCGA-85-A513        TCGA-85-A53L        TCGA-90-6837 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-90-A4ED        TCGA-90-A4EE        TCGA-92-7340        TCGA-92-7341 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-92-8063        TCGA-92-8064        TCGA-92-8065        TCGA-94-7033 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-94-7557        TCGA-94-7943        TCGA-96-7544        TCGA-96-7545 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-96-8169        TCGA-96-8170        TCGA-96-A4JK        TCGA-96-A4JL 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-NC-A5HI 
"4P GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
  "4P GAIN MUTATED"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56V        TCGA-46-3768        TCGA-46-6025 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-5898 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-56-7730        TCGA-56-7822        TCGA-56-8503        TCGA-56-8504 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-56-8622        TCGA-56-8624        TCGA-56-8625        TCGA-56-8626 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-56-A4BY        TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-58-8386        TCGA-58-8387        TCGA-58-8388        TCGA-58-8390 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-58-8391        TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-58-A46K        TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-60-2695        TCGA-60-2696        TCGA-60-2697        TCGA-60-2698 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-60-2703        TCGA-60-2704        TCGA-60-2706        TCGA-60-2707 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-60-2708        TCGA-60-2709        TCGA-60-2710        TCGA-60-2711 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-60-2712        TCGA-60-2713        TCGA-60-2714        TCGA-60-2715 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-60-2716        TCGA-60-2719        TCGA-60-2720        TCGA-60-2721 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-60-2722        TCGA-60-2723        TCGA-60-2724        TCGA-60-2725 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-60-2726        TCGA-66-2727        TCGA-66-2734        TCGA-66-2737 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2753        TCGA-66-2754 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2755        TCGA-66-2756        TCGA-66-2757        TCGA-66-2758 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2759        TCGA-66-2763        TCGA-66-2765        TCGA-66-2766 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2767        TCGA-66-2768        TCGA-66-2769        TCGA-66-2770 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2771        TCGA-66-2773        TCGA-66-2777        TCGA-66-2778 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2780        TCGA-66-2781        TCGA-66-2782        TCGA-66-2783 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2785        TCGA-66-2786        TCGA-66-2787        TCGA-66-2788 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2789        TCGA-66-2790        TCGA-66-2791        TCGA-66-2792 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2793        TCGA-66-2794        TCGA-66-2795        TCGA-66-2800 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-68-7755        TCGA-68-7756        TCGA-68-7757        TCGA-68-8250 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-68-8251        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8007 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-77-8008        TCGA-77-8009        TCGA-77-8128        TCGA-77-8130 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-77-8131        TCGA-77-8133        TCGA-77-8136        TCGA-77-8138 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8140        TCGA-77-8143        TCGA-77-8144 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-77-8145        TCGA-77-8148        TCGA-77-8150        TCGA-77-8153 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ        TCGA-77-A5G3 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6560        TCGA-85-6561 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-7950 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-85-8048        TCGA-85-8049        TCGA-85-8052        TCGA-85-8070 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-85-8071        TCGA-85-8072        TCGA-85-8276        TCGA-85-8277 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-85-8287        TCGA-85-8288        TCGA-85-8350        TCGA-85-8351 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-85-8352        TCGA-85-8353        TCGA-85-8354        TCGA-85-8355 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-85-8479        TCGA-85-8481        TCGA-85-8580        TCGA-85-8582 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-85-8664        TCGA-85-8666        TCGA-85-A4CL        TCGA-85-A4QR 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-85-A50M        TCGA-85-A513        TCGA-85-A53L        TCGA-90-6837 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-90-A4ED        TCGA-90-A4EE        TCGA-92-7340        TCGA-92-7341 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-92-8063        TCGA-92-8064        TCGA-92-8065        TCGA-94-7033 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-94-7557        TCGA-94-7943        TCGA-96-7544        TCGA-96-7545 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-96-8169        TCGA-96-8170        TCGA-96-A4JK        TCGA-96-A4JL 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-NC-A5HI 
"4P GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
  "4P GAIN MUTATED"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56V        TCGA-46-3768        TCGA-46-6025 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-5898 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-56-7730        TCGA-56-7822        TCGA-56-8503        TCGA-56-8504 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-56-8622        TCGA-56-8624        TCGA-56-8625        TCGA-56-8626 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-56-A4BY        TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-58-8386        TCGA-58-8387        TCGA-58-8388        TCGA-58-8390 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-58-8391        TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-58-A46K        TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-60-2695        TCGA-60-2696        TCGA-60-2697        TCGA-60-2698 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-60-2703        TCGA-60-2704        TCGA-60-2706        TCGA-60-2707 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-60-2708        TCGA-60-2709        TCGA-60-2710        TCGA-60-2711 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-60-2712        TCGA-60-2713        TCGA-60-2714        TCGA-60-2715 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-60-2716        TCGA-60-2719        TCGA-60-2720        TCGA-60-2721 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-60-2722        TCGA-60-2723        TCGA-60-2724        TCGA-60-2725 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-60-2726        TCGA-66-2727        TCGA-66-2734        TCGA-66-2737 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2753        TCGA-66-2754 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2755        TCGA-66-2756        TCGA-66-2757        TCGA-66-2758 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2759        TCGA-66-2763        TCGA-66-2765        TCGA-66-2766 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2767        TCGA-66-2768        TCGA-66-2769        TCGA-66-2770 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2771        TCGA-66-2773        TCGA-66-2777        TCGA-66-2778 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2780        TCGA-66-2781        TCGA-66-2782        TCGA-66-2783 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2785        TCGA-66-2786        TCGA-66-2787        TCGA-66-2788 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2789        TCGA-66-2790        TCGA-66-2791        TCGA-66-2792 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2793        TCGA-66-2794        TCGA-66-2795        TCGA-66-2800 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-68-7755        TCGA-68-7756        TCGA-68-7757        TCGA-68-8250 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-68-8251        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8007 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-77-8008        TCGA-77-8009        TCGA-77-8128        TCGA-77-8130 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-77-8131        TCGA-77-8133        TCGA-77-8136        TCGA-77-8138 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8140        TCGA-77-8143        TCGA-77-8144 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-77-8145        TCGA-77-8148        TCGA-77-8150        TCGA-77-8153 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ        TCGA-77-A5G3 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6560        TCGA-85-6561 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-7950 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-85-8048        TCGA-85-8049        TCGA-85-8052        TCGA-85-8070 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-85-8071        TCGA-85-8072        TCGA-85-8276        TCGA-85-8277 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-85-8287        TCGA-85-8288        TCGA-85-8350        TCGA-85-8351 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-85-8352        TCGA-85-8353        TCGA-85-8354        TCGA-85-8355 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-85-8479        TCGA-85-8481        TCGA-85-8580        TCGA-85-8582 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-85-8664        TCGA-85-8666        TCGA-85-A4CL        TCGA-85-A4QR 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-85-A50M        TCGA-85-A513        TCGA-85-A53L        TCGA-90-6837 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-90-A4ED        TCGA-90-A4EE        TCGA-92-7340        TCGA-92-7341 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-92-8063        TCGA-92-8064        TCGA-92-8065        TCGA-94-7033 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-94-7557        TCGA-94-7943        TCGA-96-7544        TCGA-96-7545 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-96-8169        TCGA-96-8170        TCGA-96-A4JK        TCGA-96-A4JL 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-NC-A5HI 
"4P GAIN WILD-TYPE" 
[1] "hr=" "1.8"
D7V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  4P GAIN MUTATED         0        6        5        0         3         6
  4P GAIN WILD-TYPE       1       62      128        1        47        65
                   vv
clus                STAGE IIIA STAGE IIIB STAGE IV
  4P GAIN MUTATED            5          0        0
  4P GAIN WILD-TYPE         49         20        5
D7V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  4P GAIN MUTATED     8  13   3   2
  4P GAIN WILD-TYPE  85 237  41  17
D7V4, multiclass
    clus
vv   4P GAIN MUTATED 4P GAIN WILD-TYPE
  T1               8                85
  T2              13               237
  T3               3                41
  T4               2                17
                   vv
clus                 N0  N1  N2  N3
  4P GAIN MUTATED    18   6   2   0
  4P GAIN WILD-TYPE 235 103  32   5
D7V5, multiclass
    clus
vv   4P GAIN MUTATED 4P GAIN WILD-TYPE
  N0              18               235
  N1               6               103
  N2               2                32
  N3               0                 5
                   vv
clus                 M0  M1  MX
  4P GAIN MUTATED    23   0   3
  4P GAIN WILD-TYPE 325   5  44
D7V6, multiclass
    clus
vv   4P GAIN MUTATED 4P GAIN WILD-TYPE
  M0              23               325
  M1               0                 5
  MX               3                44
D7V7, binary
                   cls
clus                  0   1
  4P GAIN MUTATED     3  23
  4P GAIN WILD-TYPE  98 282
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4P GAIN MUTATED      3   23
  4P GAIN WILD-TYPE   98  282
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  FEMALE               3                98
  MALE                23               282
D7V8, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  4P GAIN MUTATED                                       1
  4P GAIN WILD-TYPE                                    11
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  4P GAIN MUTATED                                        0
  4P GAIN WILD-TYPE                                      6
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  4P GAIN MUTATED                                         0
  4P GAIN WILD-TYPE                                       1
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  4P GAIN MUTATED                                                            25
  4P GAIN WILD-TYPE                                                         362
D7V9, multiclass
                                                             clus
vv                                                            4P GAIN MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     1
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                    0
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              25
                                                             clus
vv                                                            4P GAIN WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      11
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                      6
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               362
D7V10, binary
                   cls
clus                  0   1
  4P GAIN MUTATED     1  25
  4P GAIN WILD-TYPE  11 369
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4P GAIN MUTATED      1   25
  4P GAIN WILD-TYPE   11  369
     clus
vv    4P GAIN MUTATED 4P GAIN WILD-TYPE
  NO                1                11
  YES              25               369
D7V11, continuous
D7V12, continuous
                   vv
clus                 R0  R1  R2  RX
  4P GAIN MUTATED    20   1   0   2
  4P GAIN WILD-TYPE 310   7   4  16
D7V13, multiclass
    clus
vv   4P GAIN MUTATED 4P GAIN WILD-TYPE
  R0              20               310
  R1               1                 7
  R2               0                 4
  RX               2                16

Clustering(8) Variable = 4Q GAIN MUTATION ANALYSIS
D8V1, survival
                   sevent
clus2                 0   1
  4Q GAIN MUTATED     7   9
  4Q GAIN WILD-TYPE 232 129
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
               16               361 
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
                9               129 
$`4Q GAIN MUTATED`
TCGA-18-3409 TCGA-18-3410 TCGA-22-4593 TCGA-22-4601 TCGA-22-5478 TCGA-22-A5C4 
       79.46         4.80        35.08        34.75         0.79         0.95 
TCGA-33-6738 TCGA-34-2596 TCGA-34-2609 TCGA-39-5031 TCGA-43-2576 TCGA-43-3920 
       26.99         2.63        31.23        27.35        40.21        33.07 
TCGA-56-1622 TCGA-56-7579 TCGA-60-2715 TCGA-96-7545 
       28.93         1.45        35.34        44.15 

$`4Q GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3411 TCGA-18-3412 TCGA-18-3414 
       12.16         4.47        81.07        46.52        11.34        13.02 
TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 
       59.51        28.34        24.92         1.61        43.76         6.15 
TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 
        2.79        90.51         3.02        27.16       119.54        46.88 
TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1079 
       99.16        70.13        60.89        34.78        15.55        31.69 
TCGA-21-1080 TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 
      122.43         9.30       119.80         8.78        31.63        88.08 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-21-A5DI TCGA-22-0940 TCGA-22-0944 
       41.69        33.93        10.82        32.19        19.99         7.33 
TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 
       14.93         4.31        64.21         1.74        14.10        27.02 
TCGA-22-1017 TCGA-22-4591 TCGA-22-4594 TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 
       48.82        20.45        48.33        24.13         0.56        38.17 
TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 
       13.12        32.02        19.30         9.53        11.77        31.73 
TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5479 TCGA-22-5480 
       64.90        63.52        14.60        44.22        54.28        71.34 
TCGA-22-5481 TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 
       79.20        11.74        18.84        30.08        62.86        56.32 
TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 
       16.60         7.63       114.05        97.94        43.10       173.79 
TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-4587 TCGA-33-4589 TCGA-33-6737 
      103.53       141.34        14.07        54.44        10.98        19.76 
TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 
       61.61        31.50        28.96        32.84        50.24        67.79 
TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 
       56.38         9.04        23.24        12.00        14.07        30.94 
TCGA-34-5928 TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 
       18.12         4.96         1.08         3.95         0.43         0.39 
TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 
        6.54         8.09         7.46         7.82         6.81         0.39 
TCGA-37-5819 TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 
        3.39        47.80        74.07        44.71        68.58        55.17 
TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5034 
       70.03        60.76         1.71        24.33         1.94        36.39 
TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-39-5040 TCGA-43-2578 
       15.58        35.64        35.70        17.88        17.06        22.49 
TCGA-43-2581 TCGA-43-3394 TCGA-43-5668 TCGA-43-5670 TCGA-43-6143 TCGA-43-6647 
       38.66        27.02        11.47        18.05        12.36        24.89 
TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 
       10.19         5.42         3.78         6.97         1.58        66.51 
TCGA-43-8115 TCGA-43-8116 TCGA-43-8118 TCGA-43-A474 TCGA-43-A475 TCGA-43-A56V 
        6.64         6.35         2.93        11.61         9.73         5.06 
TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 
        9.96        10.65        13.87         0.39         0.39        29.95 
TCGA-52-7622 TCGA-52-7809 TCGA-52-7810 TCGA-52-7811 TCGA-52-7812 TCGA-56-5897 
       17.79         5.42        30.31         8.75        27.45         0.10 
TCGA-56-5898 TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 
       18.25         2.04         1.02         0.99         0.43         0.99 
TCGA-56-7580 TCGA-56-7582 TCGA-56-7730 TCGA-56-7822 TCGA-56-8503 TCGA-56-8504 
        1.32         0.85         0.20         0.03         1.35         5.82 
TCGA-56-8622 TCGA-56-8624 TCGA-56-8625 TCGA-56-8626 TCGA-56-8628 TCGA-56-8629 
        1.78         1.18         2.07         0.56         0.53         1.12 
TCGA-56-A49D TCGA-56-A4BX TCGA-56-A4BY TCGA-56-A4ZJ TCGA-56-A4ZK TCGA-56-A5DS 
        0.99         1.51         0.99         1.02         0.13         0.26 
TCGA-58-8386 TCGA-58-8387 TCGA-58-8388 TCGA-58-8390 TCGA-58-8391 TCGA-58-8392 
        0.03        13.25        12.43        29.95        71.24        16.47 
TCGA-58-8393 TCGA-58-A46J TCGA-58-A46K TCGA-58-A46L TCGA-58-A46M TCGA-58-A46N 
       34.78        64.87        34.36        36.59        23.24        17.72 
TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 
       21.07         3.58        12.23        10.22        96.82        37.94 
TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 
       92.71        21.70        80.42        49.48        66.51        41.39 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 
        9.01        56.91        50.33        48.49        42.61         3.16 
TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 
       32.28        29.85        35.90        23.57        26.79        11.77 
TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 
       16.96        43.10         2.01        21.07         0.99         1.02 
TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 
        2.01         0.92         0.99         0.99        20.98        25.02 
TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 
        0.99         2.01         1.02         2.01         2.01         7.07 
TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 
       23.01        19.00         3.02         2.01        19.00        12.03 
TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 
        3.98        12.00        24.95         1.94        25.97        40.01 
TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 
       22.98         4.04        22.98         5.03        30.02        10.06 
TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 TCGA-68-7757 
       54.08         4.01        49.05         2.73         6.64         6.94 
TCGA-68-8250 TCGA-68-8251 TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 
        8.02         3.12        29.56        73.08        75.09        23.28 
TCGA-77-7138 TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 
       11.18        89.95        20.78         0.49        42.25        70.09 
TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 TCGA-77-8007 TCGA-77-8008 
      106.95         0.16        46.78        15.75         6.51        86.76 
TCGA-77-8009 TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 
       53.95        37.81        82.92        12.59        53.92        39.09 
TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 TCGA-77-8143 TCGA-77-8144 TCGA-77-8145 
       17.69       104.09        11.54        26.40        27.39         6.97 
TCGA-77-8148 TCGA-77-8150 TCGA-77-8153 TCGA-77-8154 TCGA-77-8156 TCGA-77-A5FZ 
        9.63        54.41        55.33        35.90         0.33       126.18 
TCGA-77-A5G3 TCGA-77-A5GB TCGA-77-A5GH TCGA-85-6560 TCGA-85-6561 TCGA-85-6798 
      117.57        30.81        23.44         0.36         0.79         1.12 
TCGA-85-7696 TCGA-85-7697 TCGA-85-7698 TCGA-85-7699 TCGA-85-7843 TCGA-85-7844 
        0.59         0.33         1.61         0.03         1.15         1.25 
TCGA-85-7950 TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 
        1.97         0.85         1.97         0.53        16.77        14.07 
TCGA-85-8072 TCGA-85-8276 TCGA-85-8277 TCGA-85-8287 TCGA-85-8288 TCGA-85-8350 
        1.18         0.43         0.36         1.45         1.78         1.97 
TCGA-85-8351 TCGA-85-8352 TCGA-85-8353 TCGA-85-8354 TCGA-85-8355 TCGA-85-8479 
        1.81         2.20         1.78         2.01         0.66         0.72 
TCGA-85-8481 TCGA-85-8580 TCGA-85-8582 TCGA-85-8664 TCGA-85-8666 TCGA-85-A4CL 
        0.66        14.60        13.91         0.10        15.58         0.46 
TCGA-85-A4QR TCGA-85-A50M TCGA-85-A513 TCGA-85-A53L TCGA-90-6837 TCGA-90-7766 
        0.82         0.62         0.79         0.43        24.89         9.50 
TCGA-90-7767 TCGA-90-7769 TCGA-90-7964 TCGA-90-A4ED TCGA-90-A4EE TCGA-92-7340 
        2.93        11.77        14.07         8.02        10.88         2.70 
TCGA-92-7341 TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 
        3.48         4.01         5.26         2.27         2.86         0.16 
TCGA-94-7943 TCGA-96-7544 TCGA-96-8169 TCGA-96-8170 TCGA-96-A4JK TCGA-96-A4JL 
       11.70        39.88         6.18         6.90         8.98         6.02 
TCGA-98-7454 TCGA-98-8020 TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 TCGA-J1-A4AH 
        8.42         2.73        13.58         7.33        10.13         7.30 
TCGA-L3-A4E7 TCGA-L3-A524 TCGA-LA-A446 TCGA-MF-A522 TCGA-NC-A5HE TCGA-NC-A5HG 
        1.15        14.76         1.18         3.02        56.61        50.86 
TCGA-NC-A5HI 
       37.32 

  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
             0.79              0.03 
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
            79.46            173.79 
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
            30.08             13.02 
[1] "0.8 - 79.5 (30.1)"  "0.0 - 173.8 (13.0)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
  "4Q GAIN MUTATED"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56V        TCGA-46-3768        TCGA-46-6025 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-5898 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-56-7730        TCGA-56-7822        TCGA-56-8503        TCGA-56-8504 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-56-8622        TCGA-56-8624        TCGA-56-8625        TCGA-56-8626 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-56-A4BY        TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-58-8386        TCGA-58-8387        TCGA-58-8388        TCGA-58-8390 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-58-8391        TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-58-A46K        TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-60-2695        TCGA-60-2696        TCGA-60-2697        TCGA-60-2698 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-60-2703        TCGA-60-2704        TCGA-60-2706        TCGA-60-2707 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-60-2708        TCGA-60-2709        TCGA-60-2710        TCGA-60-2711 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-60-2712        TCGA-60-2713        TCGA-60-2714        TCGA-60-2715 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-60-2716        TCGA-60-2719        TCGA-60-2720        TCGA-60-2721 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-60-2722        TCGA-60-2723        TCGA-60-2724        TCGA-60-2725 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-60-2726        TCGA-66-2727        TCGA-66-2734        TCGA-66-2737 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2753        TCGA-66-2754 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2755        TCGA-66-2756        TCGA-66-2757        TCGA-66-2758 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2759        TCGA-66-2763        TCGA-66-2765        TCGA-66-2766 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2767        TCGA-66-2768        TCGA-66-2769        TCGA-66-2770 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2771        TCGA-66-2773        TCGA-66-2777        TCGA-66-2778 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2780        TCGA-66-2781        TCGA-66-2782        TCGA-66-2783 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2785        TCGA-66-2786        TCGA-66-2787        TCGA-66-2788 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2789        TCGA-66-2790        TCGA-66-2791        TCGA-66-2792 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2793        TCGA-66-2794        TCGA-66-2795        TCGA-66-2800 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-68-7755        TCGA-68-7756        TCGA-68-7757        TCGA-68-8250 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-68-8251        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8007 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-8008        TCGA-77-8009        TCGA-77-8128        TCGA-77-8130 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-8131        TCGA-77-8133        TCGA-77-8136        TCGA-77-8138 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8140        TCGA-77-8143        TCGA-77-8144 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-8145        TCGA-77-8148        TCGA-77-8150        TCGA-77-8153 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ        TCGA-77-A5G3 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6560        TCGA-85-6561 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-7950 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-8048        TCGA-85-8049        TCGA-85-8052        TCGA-85-8070 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-8071        TCGA-85-8072        TCGA-85-8276        TCGA-85-8277 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-8287        TCGA-85-8288        TCGA-85-8350        TCGA-85-8351 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-8352        TCGA-85-8353        TCGA-85-8354        TCGA-85-8355 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-8479        TCGA-85-8481        TCGA-85-8580        TCGA-85-8582 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-8664        TCGA-85-8666        TCGA-85-A4CL        TCGA-85-A4QR 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-A50M        TCGA-85-A513        TCGA-85-A53L        TCGA-90-6837 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-90-A4ED        TCGA-90-A4EE        TCGA-92-7340        TCGA-92-7341 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-92-8063        TCGA-92-8064        TCGA-92-8065        TCGA-94-7033 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-94-7557        TCGA-94-7943        TCGA-96-7544        TCGA-96-7545 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-96-8169        TCGA-96-8170        TCGA-96-A4JK        TCGA-96-A4JL 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-NC-A5HI 
"4Q GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
  "4Q GAIN MUTATED"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56V        TCGA-46-3768        TCGA-46-6025 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-5898 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-56-7730        TCGA-56-7822        TCGA-56-8503        TCGA-56-8504 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-56-8622        TCGA-56-8624        TCGA-56-8625        TCGA-56-8626 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-56-A4BY        TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-58-8386        TCGA-58-8387        TCGA-58-8388        TCGA-58-8390 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-58-8391        TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-58-A46K        TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-60-2695        TCGA-60-2696        TCGA-60-2697        TCGA-60-2698 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-60-2703        TCGA-60-2704        TCGA-60-2706        TCGA-60-2707 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-60-2708        TCGA-60-2709        TCGA-60-2710        TCGA-60-2711 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-60-2712        TCGA-60-2713        TCGA-60-2714        TCGA-60-2715 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-60-2716        TCGA-60-2719        TCGA-60-2720        TCGA-60-2721 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-60-2722        TCGA-60-2723        TCGA-60-2724        TCGA-60-2725 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-60-2726        TCGA-66-2727        TCGA-66-2734        TCGA-66-2737 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2753        TCGA-66-2754 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2755        TCGA-66-2756        TCGA-66-2757        TCGA-66-2758 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2759        TCGA-66-2763        TCGA-66-2765        TCGA-66-2766 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2767        TCGA-66-2768        TCGA-66-2769        TCGA-66-2770 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2771        TCGA-66-2773        TCGA-66-2777        TCGA-66-2778 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2780        TCGA-66-2781        TCGA-66-2782        TCGA-66-2783 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2785        TCGA-66-2786        TCGA-66-2787        TCGA-66-2788 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2789        TCGA-66-2790        TCGA-66-2791        TCGA-66-2792 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2793        TCGA-66-2794        TCGA-66-2795        TCGA-66-2800 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-68-7755        TCGA-68-7756        TCGA-68-7757        TCGA-68-8250 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-68-8251        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8007 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-8008        TCGA-77-8009        TCGA-77-8128        TCGA-77-8130 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-8131        TCGA-77-8133        TCGA-77-8136        TCGA-77-8138 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8140        TCGA-77-8143        TCGA-77-8144 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-8145        TCGA-77-8148        TCGA-77-8150        TCGA-77-8153 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ        TCGA-77-A5G3 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6560        TCGA-85-6561 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-7950 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-8048        TCGA-85-8049        TCGA-85-8052        TCGA-85-8070 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-8071        TCGA-85-8072        TCGA-85-8276        TCGA-85-8277 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-8287        TCGA-85-8288        TCGA-85-8350        TCGA-85-8351 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-8352        TCGA-85-8353        TCGA-85-8354        TCGA-85-8355 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-8479        TCGA-85-8481        TCGA-85-8580        TCGA-85-8582 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-8664        TCGA-85-8666        TCGA-85-A4CL        TCGA-85-A4QR 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-A50M        TCGA-85-A513        TCGA-85-A53L        TCGA-90-6837 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-90-A4ED        TCGA-90-A4EE        TCGA-92-7340        TCGA-92-7341 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-92-8063        TCGA-92-8064        TCGA-92-8065        TCGA-94-7033 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-94-7557        TCGA-94-7943        TCGA-96-7544        TCGA-96-7545 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-96-8169        TCGA-96-8170        TCGA-96-A4JK        TCGA-96-A4JL 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-NC-A5HI 
"4Q GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
  "4Q GAIN MUTATED"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56V        TCGA-46-3768        TCGA-46-6025 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-5898 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-56-7730        TCGA-56-7822        TCGA-56-8503        TCGA-56-8504 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-56-8622        TCGA-56-8624        TCGA-56-8625        TCGA-56-8626 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-56-A4BY        TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-58-8386        TCGA-58-8387        TCGA-58-8388        TCGA-58-8390 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-58-8391        TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-58-A46K        TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-60-2695        TCGA-60-2696        TCGA-60-2697        TCGA-60-2698 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-60-2703        TCGA-60-2704        TCGA-60-2706        TCGA-60-2707 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-60-2708        TCGA-60-2709        TCGA-60-2710        TCGA-60-2711 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-60-2712        TCGA-60-2713        TCGA-60-2714        TCGA-60-2715 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-60-2716        TCGA-60-2719        TCGA-60-2720        TCGA-60-2721 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-60-2722        TCGA-60-2723        TCGA-60-2724        TCGA-60-2725 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-60-2726        TCGA-66-2727        TCGA-66-2734        TCGA-66-2737 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2753        TCGA-66-2754 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2755        TCGA-66-2756        TCGA-66-2757        TCGA-66-2758 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2759        TCGA-66-2763        TCGA-66-2765        TCGA-66-2766 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2767        TCGA-66-2768        TCGA-66-2769        TCGA-66-2770 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2771        TCGA-66-2773        TCGA-66-2777        TCGA-66-2778 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2780        TCGA-66-2781        TCGA-66-2782        TCGA-66-2783 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2785        TCGA-66-2786        TCGA-66-2787        TCGA-66-2788 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2789        TCGA-66-2790        TCGA-66-2791        TCGA-66-2792 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2793        TCGA-66-2794        TCGA-66-2795        TCGA-66-2800 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-68-7755        TCGA-68-7756        TCGA-68-7757        TCGA-68-8250 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-68-8251        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8007 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-8008        TCGA-77-8009        TCGA-77-8128        TCGA-77-8130 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-8131        TCGA-77-8133        TCGA-77-8136        TCGA-77-8138 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8140        TCGA-77-8143        TCGA-77-8144 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-8145        TCGA-77-8148        TCGA-77-8150        TCGA-77-8153 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ        TCGA-77-A5G3 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6560        TCGA-85-6561 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-7950 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-8048        TCGA-85-8049        TCGA-85-8052        TCGA-85-8070 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-8071        TCGA-85-8072        TCGA-85-8276        TCGA-85-8277 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-8287        TCGA-85-8288        TCGA-85-8350        TCGA-85-8351 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-8352        TCGA-85-8353        TCGA-85-8354        TCGA-85-8355 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-8479        TCGA-85-8481        TCGA-85-8580        TCGA-85-8582 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-8664        TCGA-85-8666        TCGA-85-A4CL        TCGA-85-A4QR 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-A50M        TCGA-85-A513        TCGA-85-A53L        TCGA-90-6837 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-90-A4ED        TCGA-90-A4EE        TCGA-92-7340        TCGA-92-7341 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-92-8063        TCGA-92-8064        TCGA-92-8065        TCGA-94-7033 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-94-7557        TCGA-94-7943        TCGA-96-7544        TCGA-96-7545 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-96-8169        TCGA-96-8170        TCGA-96-A4JK        TCGA-96-A4JL 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-NC-A5HI 
"4Q GAIN WILD-TYPE" 
[1] "hr=" "1.4"
D8V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  4Q GAIN MUTATED         0        3        3        0         3         3
  4Q GAIN WILD-TYPE       1       65      130        1        47        68
                   vv
clus                STAGE IIIA STAGE IIIB STAGE IV
  4Q GAIN MUTATED            5          0        0
  4Q GAIN WILD-TYPE         49         20        5
D8V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  4Q GAIN MUTATED     5  10   2   1
  4Q GAIN WILD-TYPE  88 240  42  18
D8V4, multiclass
    clus
vv   4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  T1               5                88
  T2              10               240
  T3               2                42
  T4               1                18
                   vv
clus                 N0  N1  N2  N3
  4Q GAIN MUTATED    12   4   2   0
  4Q GAIN WILD-TYPE 241 105  32   5
D8V5, multiclass
    clus
vv   4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  N0              12               241
  N1               4               105
  N2               2                32
  N3               0                 5
                   vv
clus                 M0  M1  MX
  4Q GAIN MUTATED    16   0   2
  4Q GAIN WILD-TYPE 332   5  45
D8V6, multiclass
    clus
vv   4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  M0              16               332
  M1               0                 5
  MX               2                45
D8V7, binary
                   cls
clus                  0   1
  4Q GAIN MUTATED     3  15
  4Q GAIN WILD-TYPE  98 290
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4Q GAIN MUTATED      3   15
  4Q GAIN WILD-TYPE   98  290
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  FEMALE               3                98
  MALE                15               290
D8V8, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  4Q GAIN MUTATED                                       1
  4Q GAIN WILD-TYPE                                    11
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  4Q GAIN MUTATED                                        0
  4Q GAIN WILD-TYPE                                      6
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  4Q GAIN MUTATED                                         0
  4Q GAIN WILD-TYPE                                       1
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  4Q GAIN MUTATED                                                            17
  4Q GAIN WILD-TYPE                                                         370
D8V9, multiclass
                                                             clus
vv                                                            4Q GAIN MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     1
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                    0
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              17
                                                             clus
vv                                                            4Q GAIN WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      11
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                      6
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               370
D8V10, binary
                   cls
clus                  0   1
  4Q GAIN MUTATED     1  17
  4Q GAIN WILD-TYPE  11 377
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4Q GAIN MUTATED      1   17
  4Q GAIN WILD-TYPE   11  377
     clus
vv    4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  NO                1                11
  YES              17               377
D8V11, continuous
D8V12, continuous
                   vv
clus                 R0  R1  R2  RX
  4Q GAIN MUTATED    15   0   0   1
  4Q GAIN WILD-TYPE 315   8   4  17
D8V13, multiclass
    clus
vv   4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  R0              15               315
  R1               0                 8
  R2               0                 4
  RX               1                17

Clustering(9) Variable = 5P GAIN MUTATION ANALYSIS
D9V1, survival
                   sevent
clus2                 0   1
  5P GAIN MUTATED   147  89
  5P GAIN WILD-TYPE  92  49
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
              236               141 
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
               89                49 
$`5P GAIN MUTATED`
TCGA-18-3411 TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3417 TCGA-18-3421 
       46.52        11.34        13.02        59.51        24.92        43.76 
TCGA-18-5592 TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 TCGA-21-1077 TCGA-21-1080 
        3.02        46.88        99.16        70.13        34.78       122.43 
TCGA-21-1081 TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 TCGA-21-5786 
        9.30         8.78        31.63        88.08        41.69        33.93 
TCGA-21-5787 TCGA-21-A5DI TCGA-22-0940 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 
       10.82        32.19        19.99         7.33         4.31         1.74 
TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4594 TCGA-22-4595 
       14.10        27.02        20.45        35.08        48.33        24.13 
TCGA-22-4596 TCGA-22-4599 TCGA-22-4601 TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 
        0.56        38.17        34.75         9.53        11.77        31.73 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5482 TCGA-22-5483 
       63.52        14.60        44.22         0.79        11.74        18.84 
TCGA-22-5492 TCGA-22-A5C4 TCGA-33-4533 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 
       16.60         0.95       114.05       173.79       103.53       141.34 
TCGA-33-4587 TCGA-33-6738 TCGA-34-2596 TCGA-34-2600 TCGA-34-2604 TCGA-34-2608 
       54.44        26.99         2.63        61.61        31.50        32.84 
TCGA-34-2609 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5928 
       31.23         9.04        23.24        12.00        14.07        18.12 
TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 TCGA-37-3792 TCGA-37-4133 TCGA-37-4135 
        4.96         1.08         3.95         0.39         7.82         6.81 
TCGA-37-4141 TCGA-37-5819 TCGA-39-5011 TCGA-39-5016 TCGA-39-5021 TCGA-39-5022 
        0.39         3.39        47.80        74.07        68.58        55.17 
TCGA-39-5024 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 
       70.03        24.33         1.94        27.35        15.58        35.64 
TCGA-39-5039 TCGA-43-2576 TCGA-43-2581 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 
       17.88        40.21        38.66        27.02        33.07        11.47 
TCGA-43-5670 TCGA-43-6143 TCGA-43-6647 TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 
       18.05        12.36        24.89         6.97         1.58        66.51 
TCGA-43-8116 TCGA-43-A474 TCGA-43-A56V TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 
        6.35        11.61         5.06         9.96        10.65        13.87 
TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 TCGA-52-7811 TCGA-56-1622 TCGA-56-6545 
       29.95        17.79         5.42         8.75        28.93         2.04 
TCGA-56-6546 TCGA-56-7222 TCGA-56-7580 TCGA-56-7582 TCGA-56-7822 TCGA-56-8503 
        1.02         0.43         1.32         0.85         0.03         1.35 
TCGA-56-8504 TCGA-56-8624 TCGA-56-8626 TCGA-56-8628 TCGA-56-8629 TCGA-56-A4BX 
        5.82         1.18         0.56         0.53         1.12         1.51 
TCGA-56-A4BY TCGA-56-A4ZJ TCGA-56-A5DS TCGA-58-8386 TCGA-58-8387 TCGA-58-8388 
        0.99         1.02         0.26         0.03        13.25        12.43 
TCGA-58-8390 TCGA-58-8391 TCGA-58-8392 TCGA-58-A46J TCGA-58-A46K TCGA-58-A46M 
       29.95        71.24        16.47        64.87        34.36        23.24 
TCGA-58-A46N TCGA-60-2695 TCGA-60-2697 TCGA-60-2703 TCGA-60-2704 TCGA-60-2711 
       17.72        21.07        12.23        96.82        37.94        41.39 
TCGA-60-2712 TCGA-60-2714 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2723 
        9.01        50.33        42.61         3.16        32.28        35.90 
TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2737 TCGA-66-2742 
       23.57        26.79        11.77        16.96         2.01        21.07 
TCGA-66-2744 TCGA-66-2753 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 
        0.99         1.02         0.99         0.99        20.98        25.02 
TCGA-66-2766 TCGA-66-2769 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 
        1.02         7.07        23.01        19.00         3.02         2.01 
TCGA-66-2778 TCGA-66-2780 TCGA-66-2782 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 
       19.00        12.03        12.00         1.94        25.97        40.01 
TCGA-66-2788 TCGA-66-2792 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-68-7756 
       22.98        30.02        54.08         4.01        49.05         6.64 
TCGA-68-7757 TCGA-77-6842 TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 TCGA-77-7141 
        6.94        29.56        75.09        23.28        11.18         0.49 
TCGA-77-7142 TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 TCGA-77-8007 
       42.25       106.95         0.16        46.78        15.75         6.51 
TCGA-77-8008 TCGA-77-8009 TCGA-77-8128 TCGA-77-8130 TCGA-77-8133 TCGA-77-8136 
       86.76        53.95        37.81        82.92        53.92        39.09 
TCGA-77-8138 TCGA-77-8139 TCGA-77-8143 TCGA-77-8145 TCGA-77-8150 TCGA-77-8156 
       17.69       104.09        26.40         6.97        54.41         0.33 
TCGA-77-A5GH TCGA-85-6560 TCGA-85-6798 TCGA-85-7696 TCGA-85-7699 TCGA-85-7843 
       23.44         0.36         1.12         0.59         0.03         1.15 
TCGA-85-7844 TCGA-85-8048 TCGA-85-8071 TCGA-85-8072 TCGA-85-8277 TCGA-85-8287 
        1.25         0.85        14.07         1.18         0.36         1.45 
TCGA-85-8350 TCGA-85-8351 TCGA-85-8479 TCGA-85-8481 TCGA-85-8580 TCGA-85-8582 
        1.97         1.81         0.72         0.66        14.60        13.91 
TCGA-85-8664 TCGA-85-8666 TCGA-85-A4QR TCGA-85-A50M TCGA-90-7766 TCGA-90-7767 
        0.10        15.58         0.82         0.62         9.50         2.93 
TCGA-90-7769 TCGA-90-A4EE TCGA-92-7340 TCGA-92-7341 TCGA-92-8064 TCGA-94-7557 
       11.77        10.88         2.70         3.48         5.26         0.16 
TCGA-96-7544 TCGA-96-7545 TCGA-96-8169 TCGA-96-8170 TCGA-96-A4JK TCGA-98-8020 
       39.88        44.15         6.18         6.90         8.98         2.73 
TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 TCGA-J1-A4AH TCGA-L3-A4E7 TCGA-L3-A524 
       13.58         7.33        10.13         7.30         1.15        14.76 
TCGA-LA-A446 TCGA-MF-A522 
        1.18         3.02 

$`5P GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3416 
       12.16         4.47        81.07        79.46         4.80        28.34 
TCGA-18-3419 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5595 TCGA-21-1070 
        1.61         6.15         2.79        90.51        27.16       119.54 
TCGA-21-1076 TCGA-21-1078 TCGA-21-1079 TCGA-21-1082 TCGA-22-1000 TCGA-22-1005 
       60.89        15.55        31.69       119.80        14.93        64.21 
TCGA-22-1017 TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 TCGA-22-5472 TCGA-22-5479 
       48.82        13.12        32.02        19.30        64.90        54.28 
TCGA-22-5480 TCGA-22-5481 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-33-4532 
       71.34        79.20        30.08        62.86        56.32         7.63 
TCGA-33-4538 TCGA-33-4547 TCGA-33-4586 TCGA-33-4589 TCGA-33-6737 TCGA-34-2605 
       97.94        43.10        14.07        10.98        19.76        28.96 
TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5927 TCGA-37-3789 TCGA-37-4129 
       50.24        67.79        56.38        30.94         0.43         6.54 
TCGA-37-4130 TCGA-37-4132 TCGA-39-5019 TCGA-39-5027 TCGA-39-5028 TCGA-39-5034 
        8.09         7.46        44.71        60.76         1.71        36.39 
TCGA-39-5037 TCGA-39-5040 TCGA-43-2578 TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 
       35.70        17.06        22.49        10.19         5.42         3.78 
TCGA-43-8115 TCGA-43-8118 TCGA-43-A475 TCGA-51-4079 TCGA-51-4080 TCGA-52-7810 
        6.64         2.93         9.73         0.39         0.39        30.31 
TCGA-52-7812 TCGA-56-5897 TCGA-56-5898 TCGA-56-7221 TCGA-56-7223 TCGA-56-7579 
       27.45         0.10        18.25         0.99         0.99         1.45 
TCGA-56-7730 TCGA-56-8622 TCGA-56-8625 TCGA-56-A49D TCGA-56-A4ZK TCGA-58-8393 
        0.20         1.78         2.07         0.99         0.13        34.78 
TCGA-58-A46L TCGA-60-2696 TCGA-60-2698 TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 
       36.59         3.58        10.22        92.71        21.70        80.42 
TCGA-60-2709 TCGA-60-2710 TCGA-60-2713 TCGA-60-2715 TCGA-60-2716 TCGA-60-2722 
       49.48        66.51        56.91        35.34        48.49        29.85 
TCGA-66-2734 TCGA-66-2754 TCGA-66-2755 TCGA-66-2763 TCGA-66-2765 TCGA-66-2767 
       43.10         2.01         0.92         0.99         2.01         2.01 
TCGA-66-2768 TCGA-66-2781 TCGA-66-2783 TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 
        2.01         3.98        24.95         4.04        22.98         5.03 
TCGA-66-2793 TCGA-68-7755 TCGA-68-8250 TCGA-68-8251 TCGA-77-6843 TCGA-77-7139 
       10.06         2.73         8.02         3.12        73.08        89.95 
TCGA-77-7140 TCGA-77-7335 TCGA-77-8131 TCGA-77-8140 TCGA-77-8144 TCGA-77-8148 
       20.78        70.09        12.59        11.54        27.39         9.63 
TCGA-77-8153 TCGA-77-8154 TCGA-77-A5FZ TCGA-77-A5G3 TCGA-77-A5GB TCGA-85-6561 
       55.33        35.90       126.18       117.57        30.81         0.79 
TCGA-85-7697 TCGA-85-7698 TCGA-85-7950 TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 
        0.33         1.61         1.97         1.97         0.53        16.77 
TCGA-85-8276 TCGA-85-8288 TCGA-85-8352 TCGA-85-8353 TCGA-85-8354 TCGA-85-8355 
        0.43         1.78         2.20         1.78         2.01         0.66 
TCGA-85-A4CL TCGA-85-A513 TCGA-85-A53L TCGA-90-6837 TCGA-90-7964 TCGA-90-A4ED 
        0.46         0.79         0.43        24.89        14.07         8.02 
TCGA-92-8063 TCGA-92-8065 TCGA-94-7033 TCGA-94-7943 TCGA-96-A4JL TCGA-98-7454 
        4.01         2.27         2.86        11.70         6.02         8.42 
TCGA-NC-A5HE TCGA-NC-A5HG TCGA-NC-A5HI 
       56.61        50.86        37.32 

  5P GAIN MUTATED 5P GAIN WILD-TYPE 
             0.03              0.10 
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
           173.79            126.18 
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
           13.725            13.120 
[1] "0.0 - 173.8 (13.7)" "0.1 - 126.2 (13.1)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-43-A475        TCGA-43-A56V        TCGA-46-3768        TCGA-46-6025 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-5898 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-56-7730        TCGA-56-7822        TCGA-56-8503        TCGA-56-8504 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-56-8622        TCGA-56-8624        TCGA-56-8625        TCGA-56-8626 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-56-A4BY        TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-58-8386        TCGA-58-8387        TCGA-58-8388        TCGA-58-8390 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-58-8391        TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-58-A46K        TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-60-2695        TCGA-60-2696        TCGA-60-2697        TCGA-60-2698 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-60-2703        TCGA-60-2704        TCGA-60-2706        TCGA-60-2707 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-60-2708        TCGA-60-2709        TCGA-60-2710        TCGA-60-2711 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-60-2712        TCGA-60-2713        TCGA-60-2714        TCGA-60-2715 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-60-2716        TCGA-60-2719        TCGA-60-2720        TCGA-60-2721 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-60-2722        TCGA-60-2723        TCGA-60-2724        TCGA-60-2725 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-60-2726        TCGA-66-2727        TCGA-66-2734        TCGA-66-2737 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2753        TCGA-66-2754 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-66-2755        TCGA-66-2756        TCGA-66-2757        TCGA-66-2758 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-66-2759        TCGA-66-2763        TCGA-66-2765        TCGA-66-2766 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-66-2767        TCGA-66-2768        TCGA-66-2769        TCGA-66-2770 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-66-2771        TCGA-66-2773        TCGA-66-2777        TCGA-66-2778 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-66-2780        TCGA-66-2781        TCGA-66-2782        TCGA-66-2783 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-66-2785        TCGA-66-2786        TCGA-66-2787        TCGA-66-2788 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-66-2789        TCGA-66-2790        TCGA-66-2791        TCGA-66-2792 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-66-2793        TCGA-66-2794        TCGA-66-2795        TCGA-66-2800 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-68-7755        TCGA-68-7756        TCGA-68-7757        TCGA-68-8250 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-68-8251        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8007 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-77-8008        TCGA-77-8009        TCGA-77-8128        TCGA-77-8130 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-77-8131        TCGA-77-8133        TCGA-77-8136        TCGA-77-8138 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-77-8139        TCGA-77-8140        TCGA-77-8143        TCGA-77-8144 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-77-8145        TCGA-77-8148        TCGA-77-8150        TCGA-77-8153 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ        TCGA-77-A5G3 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6560        TCGA-85-6561 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-7950 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-85-8048        TCGA-85-8049        TCGA-85-8052        TCGA-85-8070 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-85-8071        TCGA-85-8072        TCGA-85-8276        TCGA-85-8277 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-85-8287        TCGA-85-8288        TCGA-85-8350        TCGA-85-8351 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-85-8352        TCGA-85-8353        TCGA-85-8354        TCGA-85-8355 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-85-8479        TCGA-85-8481        TCGA-85-8580        TCGA-85-8582 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-85-8664        TCGA-85-8666        TCGA-85-A4CL        TCGA-85-A4QR 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-85-A50M        TCGA-85-A513        TCGA-85-A53L        TCGA-90-6837 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-90-A4ED        TCGA-90-A4EE        TCGA-92-7340        TCGA-92-7341 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-92-8063        TCGA-92-8064        TCGA-92-8065        TCGA-94-7033 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-94-7557        TCGA-94-7943        TCGA-96-7544        TCGA-96-7545 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-96-8169        TCGA-96-8170        TCGA-96-A4JK        TCGA-96-A4JL 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-NC-A5HI 
"5P GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-43-A475        TCGA-43-A56V        TCGA-46-3768        TCGA-46-6025 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-5898 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-56-7730        TCGA-56-7822        TCGA-56-8503        TCGA-56-8504 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-56-8622        TCGA-56-8624        TCGA-56-8625        TCGA-56-8626 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-56-A4BY        TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-58-8386        TCGA-58-8387        TCGA-58-8388        TCGA-58-8390 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-58-8391        TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-58-A46K        TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-60-2695        TCGA-60-2696        TCGA-60-2697        TCGA-60-2698 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-60-2703        TCGA-60-2704        TCGA-60-2706        TCGA-60-2707 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-60-2708        TCGA-60-2709        TCGA-60-2710        TCGA-60-2711 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-60-2712        TCGA-60-2713        TCGA-60-2714        TCGA-60-2715 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-60-2716        TCGA-60-2719        TCGA-60-2720        TCGA-60-2721 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-60-2722        TCGA-60-2723        TCGA-60-2724        TCGA-60-2725 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-60-2726        TCGA-66-2727        TCGA-66-2734        TCGA-66-2737 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2753        TCGA-66-2754 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-66-2755        TCGA-66-2756        TCGA-66-2757        TCGA-66-2758 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-66-2759        TCGA-66-2763        TCGA-66-2765        TCGA-66-2766 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-66-2767        TCGA-66-2768        TCGA-66-2769        TCGA-66-2770 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-66-2771        TCGA-66-2773        TCGA-66-2777        TCGA-66-2778 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-66-2780        TCGA-66-2781        TCGA-66-2782        TCGA-66-2783 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-66-2785        TCGA-66-2786        TCGA-66-2787        TCGA-66-2788 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-66-2789        TCGA-66-2790        TCGA-66-2791        TCGA-66-2792 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-66-2793        TCGA-66-2794        TCGA-66-2795        TCGA-66-2800 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-68-7755        TCGA-68-7756        TCGA-68-7757        TCGA-68-8250 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-68-8251        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8007 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-77-8008        TCGA-77-8009        TCGA-77-8128        TCGA-77-8130 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-77-8131        TCGA-77-8133        TCGA-77-8136        TCGA-77-8138 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-77-8139        TCGA-77-8140        TCGA-77-8143        TCGA-77-8144 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-77-8145        TCGA-77-8148        TCGA-77-8150        TCGA-77-8153 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ        TCGA-77-A5G3 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6560        TCGA-85-6561 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-7950 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-85-8048        TCGA-85-8049        TCGA-85-8052        TCGA-85-8070 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-85-8071        TCGA-85-8072        TCGA-85-8276        TCGA-85-8277 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-85-8287        TCGA-85-8288        TCGA-85-8350        TCGA-85-8351 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-85-8352        TCGA-85-8353        TCGA-85-8354        TCGA-85-8355 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-85-8479        TCGA-85-8481        TCGA-85-8580        TCGA-85-8582 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-85-8664        TCGA-85-8666        TCGA-85-A4CL        TCGA-85-A4QR 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-85-A50M        TCGA-85-A513        TCGA-85-A53L        TCGA-90-6837 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-90-A4ED        TCGA-90-A4EE        TCGA-92-7340        TCGA-92-7341 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-92-8063        TCGA-92-8064        TCGA-92-8065        TCGA-94-7033 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-94-7557        TCGA-94-7943        TCGA-96-7544        TCGA-96-7545 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-96-8169        TCGA-96-8170        TCGA-96-A4JK        TCGA-96-A4JL 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-NC-A5HI 
"5P GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-43-A475        TCGA-43-A56V        TCGA-46-3768        TCGA-46-6025 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-5898 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-56-7730        TCGA-56-7822        TCGA-56-8503        TCGA-56-8504 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-56-8622        TCGA-56-8624        TCGA-56-8625        TCGA-56-8626 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-56-A4BY        TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-58-8386        TCGA-58-8387        TCGA-58-8388        TCGA-58-8390 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-58-8391        TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-58-A46K        TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-60-2695        TCGA-60-2696        TCGA-60-2697        TCGA-60-2698 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-60-2703        TCGA-60-2704        TCGA-60-2706        TCGA-60-2707 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-60-2708        TCGA-60-2709        TCGA-60-2710        TCGA-60-2711 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-60-2712        TCGA-60-2713        TCGA-60-2714        TCGA-60-2715 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-60-2716        TCGA-60-2719        TCGA-60-2720        TCGA-60-2721 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-60-2722        TCGA-60-2723        TCGA-60-2724        TCGA-60-2725 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-60-2726        TCGA-66-2727        TCGA-66-2734        TCGA-66-2737 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2753        TCGA-66-2754 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-66-2755        TCGA-66-2756        TCGA-66-2757        TCGA-66-2758 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-66-2759        TCGA-66-2763        TCGA-66-2765        TCGA-66-2766 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-66-2767        TCGA-66-2768        TCGA-66-2769        TCGA-66-2770 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-66-2771        TCGA-66-2773        TCGA-66-2777        TCGA-66-2778 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-66-2780        TCGA-66-2781        TCGA-66-2782        TCGA-66-2783 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-66-2785        TCGA-66-2786        TCGA-66-2787        TCGA-66-2788 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-66-2789        TCGA-66-2790        TCGA-66-2791        TCGA-66-2792 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-66-2793        TCGA-66-2794        TCGA-66-2795        TCGA-66-2800 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-68-7755        TCGA-68-7756        TCGA-68-7757        TCGA-68-8250 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-68-8251        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8007 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-77-8008        TCGA-77-8009        TCGA-77-8128        TCGA-77-8130 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-77-8131        TCGA-77-8133        TCGA-77-8136        TCGA-77-8138 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-77-8139        TCGA-77-8140        TCGA-77-8143        TCGA-77-8144 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-77-8145        TCGA-77-8148        TCGA-77-8150        TCGA-77-8153 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ        TCGA-77-A5G3 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6560        TCGA-85-6561 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-7950 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-85-8048        TCGA-85-8049        TCGA-85-8052        TCGA-85-8070 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-85-8071        TCGA-85-8072        TCGA-85-8276        TCGA-85-8277 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-85-8287        TCGA-85-8288        TCGA-85-8350        TCGA-85-8351 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-85-8352        TCGA-85-8353        TCGA-85-8354        TCGA-85-8355 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-85-8479        TCGA-85-8481        TCGA-85-8580        TCGA-85-8582 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-85-8664        TCGA-85-8666        TCGA-85-A4CL        TCGA-85-A4QR 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-85-A50M        TCGA-85-A513        TCGA-85-A53L        TCGA-90-6837 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-90-A4ED        TCGA-90-A4EE        TCGA-92-7340        TCGA-92-7341 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-92-8063        TCGA-92-8064        TCGA-92-8065        TCGA-94-7033 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-94-7557        TCGA-94-7943        TCGA-96-7544        TCGA-96-7545 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-96-8169        TCGA-96-8170        TCGA-96-A4JK        TCGA-96-A4JL 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-NC-A5HI 
"5P GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D9V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  5P GAIN MUTATED         1       43       84        1        30        49
  5P GAIN WILD-TYPE       0       25       49        0        20        22
                   vv
clus                STAGE IIIA STAGE IIIB STAGE IV
  5P GAIN MUTATED           32         11        4
  5P GAIN WILD-TYPE         22          9        1
D9V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  5P GAIN MUTATED    54 164  25  13
  5P GAIN WILD-TYPE  39  86  19   6
D9V4, multiclass
    clus
vv   5P GAIN MUTATED 5P GAIN WILD-TYPE
  T1              54                39
  T2             164                86
  T3              25                19
  T4              13                 6
                   vv
clus                 N0  N1  N2  N3
  5P GAIN MUTATED   164  67  23   1
  5P GAIN WILD-TYPE  89  42  11   4
D9V5, multiclass
    clus
vv   5P GAIN MUTATED 5P GAIN WILD-TYPE
  N0             164                89
  N1              67                42
  N2              23                11
  N3               1                 4
                   vv
clus                 M0  M1  MX
  5P GAIN MUTATED   220   4  30
  5P GAIN WILD-TYPE 128   1  17
D9V6, multiclass
    clus
vv   5P GAIN MUTATED 5P GAIN WILD-TYPE
  M0             220               128
  M1               4                 1
  MX              30                17
D9V7, binary
                   cls
clus                  0   1
  5P GAIN MUTATED    62 194
  5P GAIN WILD-TYPE  39 111
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5P GAIN MUTATED     62  194
  5P GAIN WILD-TYPE   39  111
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  FEMALE              62                39
  MALE               194               111
D9V8, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  5P GAIN MUTATED                                       8
  5P GAIN WILD-TYPE                                     4
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  5P GAIN MUTATED                                        2
  5P GAIN WILD-TYPE                                      4
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  5P GAIN MUTATED                                         1
  5P GAIN WILD-TYPE                                       0
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  5P GAIN MUTATED                                                           245
  5P GAIN WILD-TYPE                                                         142
D9V9, multiclass
                                                             clus
vv                                                            5P GAIN MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     8
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                    2
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                   1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             245
                                                             clus
vv                                                            5P GAIN WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       4
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                      4
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                     0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               142
D9V10, binary
                   cls
clus                  0   1
  5P GAIN MUTATED     7 249
  5P GAIN WILD-TYPE   5 145
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5P GAIN MUTATED      7  249
  5P GAIN WILD-TYPE    5  145
     clus
vv    5P GAIN MUTATED 5P GAIN WILD-TYPE
  NO                7                 5
  YES             249               145
D9V11, continuous
D9V12, continuous
                   vv
clus                 R0  R1  R2  RX
  5P GAIN MUTATED   215   5   3   5
  5P GAIN WILD-TYPE 115   3   1  13
D9V13, multiclass
    clus
vv   5P GAIN MUTATED 5P GAIN WILD-TYPE
  R0             215               115
  R1               5                 3
  R2               3                 1
  RX               5                13

Clustering(10) Variable = 5Q GAIN MUTATION ANALYSIS
D10V1, survival
                   sevent
clus2                 0   1
  5Q GAIN MUTATED    43  30
  5Q GAIN WILD-TYPE 196 108
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
               73               304 
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
               30               108 
$`5Q GAIN MUTATED`
TCGA-18-5592 TCGA-21-1071 TCGA-21-1075 TCGA-21-1083 TCGA-21-5782 TCGA-21-A5DI 
        3.02        46.88        70.13         8.78        31.63        32.19 
TCGA-22-1012 TCGA-22-1016 TCGA-22-4595 TCGA-22-4596 TCGA-22-5478 TCGA-22-5482 
       14.10        27.02        24.13         0.56         0.79        11.74 
TCGA-22-5483 TCGA-22-A5C4 TCGA-33-4582 TCGA-33-4583 TCGA-34-2596 TCGA-34-5236 
       18.84         0.95       103.53       141.34         2.63         9.04 
TCGA-34-5241 TCGA-34-5928 TCGA-37-3792 TCGA-37-5819 TCGA-39-5021 TCGA-39-5029 
       14.07        18.12         0.39         3.39        68.58        24.33 
TCGA-39-5039 TCGA-43-3920 TCGA-43-6143 TCGA-43-7657 TCGA-43-7658 TCGA-43-A56V 
       17.88        33.07        12.36         1.58        66.51         5.06 
TCGA-56-1622 TCGA-56-7222 TCGA-56-7580 TCGA-56-8503 TCGA-56-8624 TCGA-56-8626 
       28.93         0.43         1.32         1.35         1.18         0.56 
TCGA-58-8386 TCGA-58-A46M TCGA-58-A46N TCGA-60-2703 TCGA-60-2712 TCGA-60-2719 
        0.03        23.24        17.72        96.82         9.01        42.61 
TCGA-60-2724 TCGA-60-2725 TCGA-66-2744 TCGA-66-2771 TCGA-66-2778 TCGA-66-2786 
       23.57        26.79         0.99        19.00        19.00        25.97 
TCGA-66-2792 TCGA-77-6842 TCGA-77-6844 TCGA-77-7138 TCGA-77-7337 TCGA-77-7463 
       30.02        29.56        75.09        11.18       106.95        46.78 
TCGA-77-7465 TCGA-77-8008 TCGA-77-8130 TCGA-77-8133 TCGA-77-8150 TCGA-77-8156 
       15.75        86.76        82.92        53.92        54.41         0.33 
TCGA-85-7699 TCGA-85-8048 TCGA-85-8350 TCGA-85-8582 TCGA-90-7769 TCGA-92-7340 
        0.03         0.85         1.97        13.91        11.77         2.70 
TCGA-96-8169 TCGA-96-8170 TCGA-98-8020 TCGA-J1-A4AH TCGA-L3-A4E7 TCGA-LA-A446 
        6.18         6.90         2.73         7.30         1.15         1.18 
TCGA-MF-A522 
        3.02 

$`5Q GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5595 TCGA-21-1070 
       43.76         6.15         2.79        90.51        27.16       119.54 
TCGA-21-1072 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1079 TCGA-21-1080 
       99.16        60.89        34.78        15.55        31.69       122.43 
TCGA-21-1081 TCGA-21-1082 TCGA-21-5783 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 
        9.30       119.80        88.08        41.69        33.93        10.82 
TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 
       19.99         7.33        14.93         4.31        64.21         1.74 
TCGA-22-1017 TCGA-22-4591 TCGA-22-4593 TCGA-22-4594 TCGA-22-4599 TCGA-22-4601 
       48.82        20.45        35.08        48.33        38.17        34.75 
TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 
       13.12        32.02        19.30         9.53        11.77        31.73 
TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5479 TCGA-22-5480 
       64.90        63.52        14.60        44.22        54.28        71.34 
TCGA-22-5481 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 
       79.20        30.08        62.86        56.32        16.60         7.63 
TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4586 TCGA-33-4587 
      114.05        97.94        43.10       173.79        14.07        54.44 
TCGA-33-4589 TCGA-33-6737 TCGA-33-6738 TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 
       10.98        19.76        26.99        61.61        31.50        28.96 
TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5239 
       32.84        31.23        50.24        67.79        56.38        23.24 
TCGA-34-5240 TCGA-34-5927 TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 
       12.00        30.94         4.96         1.08         3.95         0.43 
TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 
        6.54         8.09         7.46         7.82         6.81         0.39 
TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 
       47.80        74.07        44.71        55.17        70.03        60.76 
TCGA-39-5028 TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 TCGA-39-5035 TCGA-39-5036 
        1.71         1.94        27.35        36.39        15.58        35.64 
TCGA-39-5037 TCGA-39-5040 TCGA-43-2576 TCGA-43-2578 TCGA-43-2581 TCGA-43-3394 
       35.70        17.06        40.21        22.49        38.66        27.02 
TCGA-43-5668 TCGA-43-5670 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 
       11.47        18.05        24.89        10.19         5.42         3.78 
TCGA-43-7656 TCGA-43-8115 TCGA-43-8116 TCGA-43-8118 TCGA-43-A474 TCGA-43-A475 
        6.97         6.64         6.35         2.93        11.61         9.73 
TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 
        9.96        10.65        13.87         0.39         0.39        29.95 
TCGA-52-7622 TCGA-52-7809 TCGA-52-7810 TCGA-52-7811 TCGA-52-7812 TCGA-56-5897 
       17.79         5.42        30.31         8.75        27.45         0.10 
TCGA-56-5898 TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 TCGA-56-7223 TCGA-56-7579 
       18.25         2.04         1.02         0.99         0.99         1.45 
TCGA-56-7582 TCGA-56-7730 TCGA-56-7822 TCGA-56-8504 TCGA-56-8622 TCGA-56-8625 
        0.85         0.20         0.03         5.82         1.78         2.07 
TCGA-56-8628 TCGA-56-8629 TCGA-56-A49D TCGA-56-A4BX TCGA-56-A4BY TCGA-56-A4ZJ 
        0.53         1.12         0.99         1.51         0.99         1.02 
TCGA-56-A4ZK TCGA-56-A5DS TCGA-58-8387 TCGA-58-8388 TCGA-58-8390 TCGA-58-8391 
        0.13         0.26        13.25        12.43        29.95        71.24 
TCGA-58-8392 TCGA-58-8393 TCGA-58-A46J TCGA-58-A46K TCGA-58-A46L TCGA-60-2695 
       16.47        34.78        64.87        34.36        36.59        21.07 
TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 
        3.58        12.23        10.22        37.94        92.71        21.70 
TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2713 TCGA-60-2714 
       80.42        49.48        66.51        41.39        56.91        50.33 
TCGA-60-2715 TCGA-60-2716 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 
       35.34        48.49         3.16        32.28        29.85        35.90 
TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 TCGA-66-2753 
       11.77        16.96        43.10         2.01        21.07         1.02 
TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 
        2.01         0.92         0.99         0.99        20.98        25.02 
TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 
        0.99         2.01         1.02         2.01         2.01         7.07 
TCGA-66-2770 TCGA-66-2773 TCGA-66-2777 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 
       23.01         3.02         2.01        12.03         3.98        12.00 
TCGA-66-2783 TCGA-66-2785 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 
       24.95         1.94        40.01        22.98         4.04        22.98 
TCGA-66-2791 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 
        5.03        10.06        54.08         4.01        49.05         2.73 
TCGA-68-7756 TCGA-68-7757 TCGA-68-8250 TCGA-68-8251 TCGA-77-6843 TCGA-77-6845 
        6.64         6.94         8.02         3.12        73.08        23.28 
TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 TCGA-77-7338 
       89.95        20.78         0.49        42.25        70.09         0.16 
TCGA-77-8007 TCGA-77-8009 TCGA-77-8128 TCGA-77-8131 TCGA-77-8136 TCGA-77-8138 
        6.51        53.95        37.81        12.59        39.09        17.69 
TCGA-77-8139 TCGA-77-8140 TCGA-77-8143 TCGA-77-8144 TCGA-77-8145 TCGA-77-8148 
      104.09        11.54        26.40        27.39         6.97         9.63 
TCGA-77-8153 TCGA-77-8154 TCGA-77-A5FZ TCGA-77-A5G3 TCGA-77-A5GB TCGA-77-A5GH 
       55.33        35.90       126.18       117.57        30.81        23.44 
TCGA-85-6560 TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 TCGA-85-7697 TCGA-85-7698 
        0.36         0.79         1.12         0.59         0.33         1.61 
TCGA-85-7843 TCGA-85-7844 TCGA-85-7950 TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 
        1.15         1.25         1.97         1.97         0.53        16.77 
TCGA-85-8071 TCGA-85-8072 TCGA-85-8276 TCGA-85-8277 TCGA-85-8287 TCGA-85-8288 
       14.07         1.18         0.43         0.36         1.45         1.78 
TCGA-85-8351 TCGA-85-8352 TCGA-85-8353 TCGA-85-8354 TCGA-85-8355 TCGA-85-8479 
        1.81         2.20         1.78         2.01         0.66         0.72 
TCGA-85-8481 TCGA-85-8580 TCGA-85-8664 TCGA-85-8666 TCGA-85-A4CL TCGA-85-A4QR 
        0.66        14.60         0.10        15.58         0.46         0.82 
TCGA-85-A50M TCGA-85-A513 TCGA-85-A53L TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 
        0.62         0.79         0.43        24.89         9.50         2.93 
TCGA-90-7964 TCGA-90-A4ED TCGA-90-A4EE TCGA-92-7341 TCGA-92-8063 TCGA-92-8064 
       14.07         8.02        10.88         3.48         4.01         5.26 
TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 TCGA-94-7943 TCGA-96-7544 TCGA-96-7545 
        2.27         2.86         0.16        11.70        39.88        44.15 
TCGA-96-A4JK TCGA-96-A4JL TCGA-98-7454 TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 
        8.98         6.02         8.42        13.58         7.33        10.13 
TCGA-L3-A524 TCGA-NC-A5HE TCGA-NC-A5HG TCGA-NC-A5HI 
       14.76        56.61        50.86        37.32 

  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
             0.03              0.03 
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
           141.34            173.79 
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
           14.070            13.185 
[1] "0.0 - 141.3 (14.1)" "0.0 - 173.8 (13.2)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
  "5Q GAIN MUTATED"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56V        TCGA-46-3768        TCGA-46-6025 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-5898 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-56-7730        TCGA-56-7822        TCGA-56-8503        TCGA-56-8504 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-56-8622        TCGA-56-8624        TCGA-56-8625        TCGA-56-8626 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-56-A4BY        TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-58-8386        TCGA-58-8387        TCGA-58-8388        TCGA-58-8390 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-58-8391        TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-58-A46K        TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" 
       TCGA-60-2695        TCGA-60-2696        TCGA-60-2697        TCGA-60-2698 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-60-2703        TCGA-60-2704        TCGA-60-2706        TCGA-60-2707 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-60-2708        TCGA-60-2709        TCGA-60-2710        TCGA-60-2711 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-60-2712        TCGA-60-2713        TCGA-60-2714        TCGA-60-2715 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-60-2716        TCGA-60-2719        TCGA-60-2720        TCGA-60-2721 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-60-2722        TCGA-60-2723        TCGA-60-2724        TCGA-60-2725 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" 
       TCGA-60-2726        TCGA-66-2727        TCGA-66-2734        TCGA-66-2737 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2753        TCGA-66-2754 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-66-2755        TCGA-66-2756        TCGA-66-2757        TCGA-66-2758 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-66-2759        TCGA-66-2763        TCGA-66-2765        TCGA-66-2766 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-66-2767        TCGA-66-2768        TCGA-66-2769        TCGA-66-2770 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-66-2771        TCGA-66-2773        TCGA-66-2777        TCGA-66-2778 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-66-2780        TCGA-66-2781        TCGA-66-2782        TCGA-66-2783 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-66-2785        TCGA-66-2786        TCGA-66-2787        TCGA-66-2788 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-66-2789        TCGA-66-2790        TCGA-66-2791        TCGA-66-2792 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-66-2793        TCGA-66-2794        TCGA-66-2795        TCGA-66-2800 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-68-7755        TCGA-68-7756        TCGA-68-7757        TCGA-68-8250 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-68-8251        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8007 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-77-8008        TCGA-77-8009        TCGA-77-8128        TCGA-77-8130 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-77-8131        TCGA-77-8133        TCGA-77-8136        TCGA-77-8138 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8140        TCGA-77-8143        TCGA-77-8144 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-77-8145        TCGA-77-8148        TCGA-77-8150        TCGA-77-8153 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ        TCGA-77-A5G3 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6560        TCGA-85-6561 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-7950 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-85-8048        TCGA-85-8049        TCGA-85-8052        TCGA-85-8070 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-85-8071        TCGA-85-8072        TCGA-85-8276        TCGA-85-8277 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-85-8287        TCGA-85-8288        TCGA-85-8350        TCGA-85-8351 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-85-8352        TCGA-85-8353        TCGA-85-8354        TCGA-85-8355 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-85-8479        TCGA-85-8481        TCGA-85-8580        TCGA-85-8582 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-85-8664        TCGA-85-8666        TCGA-85-A4CL        TCGA-85-A4QR 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-85-A50M        TCGA-85-A513        TCGA-85-A53L        TCGA-90-6837 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-90-A4ED        TCGA-90-A4EE        TCGA-92-7340        TCGA-92-7341 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-92-8063        TCGA-92-8064        TCGA-92-8065        TCGA-94-7033 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-94-7557        TCGA-94-7943        TCGA-96-7544        TCGA-96-7545 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-96-8169        TCGA-96-8170        TCGA-96-A4JK        TCGA-96-A4JL 
  "5Q GAIN MUTATED"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
  "5Q GAIN MUTATED"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-NC-A5HI 
"5Q GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
  "5Q GAIN MUTATED"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56V        TCGA-46-3768        TCGA-46-6025 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-5898 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-56-7730        TCGA-56-7822        TCGA-56-8503        TCGA-56-8504 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-56-8622        TCGA-56-8624        TCGA-56-8625        TCGA-56-8626 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-56-A4BY        TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-58-8386        TCGA-58-8387        TCGA-58-8388        TCGA-58-8390 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-58-8391        TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-58-A46K        TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" 
       TCGA-60-2695        TCGA-60-2696        TCGA-60-2697        TCGA-60-2698 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-60-2703        TCGA-60-2704        TCGA-60-2706        TCGA-60-2707 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-60-2708        TCGA-60-2709        TCGA-60-2710        TCGA-60-2711 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-60-2712        TCGA-60-2713        TCGA-60-2714        TCGA-60-2715 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-60-2716        TCGA-60-2719        TCGA-60-2720        TCGA-60-2721 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-60-2722        TCGA-60-2723        TCGA-60-2724        TCGA-60-2725 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" 
       TCGA-60-2726        TCGA-66-2727        TCGA-66-2734        TCGA-66-2737 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2753        TCGA-66-2754 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-66-2755        TCGA-66-2756        TCGA-66-2757        TCGA-66-2758 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-66-2759        TCGA-66-2763        TCGA-66-2765        TCGA-66-2766 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-66-2767        TCGA-66-2768        TCGA-66-2769        TCGA-66-2770 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-66-2771        TCGA-66-2773        TCGA-66-2777        TCGA-66-2778 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-66-2780        TCGA-66-2781        TCGA-66-2782        TCGA-66-2783 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-66-2785        TCGA-66-2786        TCGA-66-2787        TCGA-66-2788 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-66-2789        TCGA-66-2790        TCGA-66-2791        TCGA-66-2792 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-66-2793        TCGA-66-2794        TCGA-66-2795        TCGA-66-2800 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-68-7755        TCGA-68-7756        TCGA-68-7757        TCGA-68-8250 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-68-8251        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8007 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-77-8008        TCGA-77-8009        TCGA-77-8128        TCGA-77-8130 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-77-8131        TCGA-77-8133        TCGA-77-8136        TCGA-77-8138 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8140        TCGA-77-8143        TCGA-77-8144 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-77-8145        TCGA-77-8148        TCGA-77-8150        TCGA-77-8153 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ        TCGA-77-A5G3 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6560        TCGA-85-6561 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-7950 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-85-8048        TCGA-85-8049        TCGA-85-8052        TCGA-85-8070 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-85-8071        TCGA-85-8072        TCGA-85-8276        TCGA-85-8277 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-85-8287        TCGA-85-8288        TCGA-85-8350        TCGA-85-8351 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-85-8352        TCGA-85-8353        TCGA-85-8354        TCGA-85-8355 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-85-8479        TCGA-85-8481        TCGA-85-8580        TCGA-85-8582 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-85-8664        TCGA-85-8666        TCGA-85-A4CL        TCGA-85-A4QR 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-85-A50M        TCGA-85-A513        TCGA-85-A53L        TCGA-90-6837 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-90-A4ED        TCGA-90-A4EE        TCGA-92-7340        TCGA-92-7341 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-92-8063        TCGA-92-8064        TCGA-92-8065        TCGA-94-7033 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-94-7557        TCGA-94-7943        TCGA-96-7544        TCGA-96-7545 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-96-8169        TCGA-96-8170        TCGA-96-A4JK        TCGA-96-A4JL 
  "5Q GAIN MUTATED"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
  "5Q GAIN MUTATED"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-NC-A5HI 
"5Q GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
  "5Q GAIN MUTATED"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56V        TCGA-46-3768        TCGA-46-6025 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-5898 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-56-7730        TCGA-56-7822        TCGA-56-8503        TCGA-56-8504 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-56-8622        TCGA-56-8624        TCGA-56-8625        TCGA-56-8626 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-56-A4BY        TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-58-8386        TCGA-58-8387        TCGA-58-8388        TCGA-58-8390 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-58-8391        TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-58-A46K        TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" 
       TCGA-60-2695        TCGA-60-2696        TCGA-60-2697        TCGA-60-2698 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-60-2703        TCGA-60-2704        TCGA-60-2706        TCGA-60-2707 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-60-2708        TCGA-60-2709        TCGA-60-2710        TCGA-60-2711 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-60-2712        TCGA-60-2713        TCGA-60-2714        TCGA-60-2715 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-60-2716        TCGA-60-2719        TCGA-60-2720        TCGA-60-2721 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-60-2722        TCGA-60-2723        TCGA-60-2724        TCGA-60-2725 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" 
       TCGA-60-2726        TCGA-66-2727        TCGA-66-2734        TCGA-66-2737 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2753        TCGA-66-2754 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-66-2755        TCGA-66-2756        TCGA-66-2757        TCGA-66-2758 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-66-2759        TCGA-66-2763        TCGA-66-2765        TCGA-66-2766 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-66-2767        TCGA-66-2768        TCGA-66-2769        TCGA-66-2770 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-66-2771        TCGA-66-2773        TCGA-66-2777        TCGA-66-2778 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-66-2780        TCGA-66-2781        TCGA-66-2782        TCGA-66-2783 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-66-2785        TCGA-66-2786        TCGA-66-2787        TCGA-66-2788 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-66-2789        TCGA-66-2790        TCGA-66-2791        TCGA-66-2792 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-66-2793        TCGA-66-2794        TCGA-66-2795        TCGA-66-2800 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-68-7755        TCGA-68-7756        TCGA-68-7757        TCGA-68-8250 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-68-8251        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8007 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-77-8008        TCGA-77-8009        TCGA-77-8128        TCGA-77-8130 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-77-8131        TCGA-77-8133        TCGA-77-8136        TCGA-77-8138 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8140        TCGA-77-8143        TCGA-77-8144 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-77-8145        TCGA-77-8148        TCGA-77-8150        TCGA-77-8153 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ        TCGA-77-A5G3 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6560        TCGA-85-6561 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-7950 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-85-8048        TCGA-85-8049        TCGA-85-8052        TCGA-85-8070 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-85-8071        TCGA-85-8072        TCGA-85-8276        TCGA-85-8277 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-85-8287        TCGA-85-8288        TCGA-85-8350        TCGA-85-8351 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-85-8352        TCGA-85-8353        TCGA-85-8354        TCGA-85-8355 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-85-8479        TCGA-85-8481        TCGA-85-8580        TCGA-85-8582 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-85-8664        TCGA-85-8666        TCGA-85-A4CL        TCGA-85-A4QR 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-85-A50M        TCGA-85-A513        TCGA-85-A53L        TCGA-90-6837 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-90-A4ED        TCGA-90-A4EE        TCGA-92-7340        TCGA-92-7341 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-92-8063        TCGA-92-8064        TCGA-92-8065        TCGA-94-7033 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-94-7557        TCGA-94-7943        TCGA-96-7544        TCGA-96-7545 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-96-8169        TCGA-96-8170        TCGA-96-A4JK        TCGA-96-A4JL 
  "5Q GAIN MUTATED"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
  "5Q GAIN MUTATED"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-NC-A5HI 
"5Q GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D10V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  5Q GAIN MUTATED         1       13       24        0         8        20
  5Q GAIN WILD-TYPE       0       55      109        1        42        51
                   vv
clus                STAGE IIIA STAGE IIIB STAGE IV
  5Q GAIN MUTATED            9          1        1
  5Q GAIN WILD-TYPE         45         19        4
D10V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  5Q GAIN MUTATED    20  47  10   1
  5Q GAIN WILD-TYPE  73 203  34  18
D10V4, multiclass
    clus
vv   5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  T1              20                73
  T2              47               203
  T3              10                34
  T4               1                18
                   vv
clus                 N0  N1  N2  N3
  5Q GAIN MUTATED    48  23   5   1
  5Q GAIN WILD-TYPE 205  86  29   4
D10V5, multiclass
    clus
vv   5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  N0              48               205
  N1              23                86
  N2               5                29
  N3               1                 4
                   vv
clus                 M0  M1  MX
  5Q GAIN MUTATED    67   1   8
  5Q GAIN WILD-TYPE 281   4  39
D10V6, multiclass
    clus
vv   5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  M0              67               281
  M1               1                 4
  MX               8                39
D10V7, binary
                   cls
clus                  0   1
  5Q GAIN MUTATED    17  61
  5Q GAIN WILD-TYPE  84 244
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5Q GAIN MUTATED     17   61
  5Q GAIN WILD-TYPE   84  244
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  FEMALE              17                84
  MALE                61               244
D10V8, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  5Q GAIN MUTATED                                       2
  5Q GAIN WILD-TYPE                                    10
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  5Q GAIN MUTATED                                        0
  5Q GAIN WILD-TYPE                                      6
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  5Q GAIN MUTATED                                         0
  5Q GAIN WILD-TYPE                                       1
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  5Q GAIN MUTATED                                                            76
  5Q GAIN WILD-TYPE                                                         311
D10V9, multiclass
                                                             clus
vv                                                            5Q GAIN MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     2
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                    0
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              76
                                                             clus
vv                                                            5Q GAIN WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      10
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                      6
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               311
D10V10, binary
                   cls
clus                  0   1
  5Q GAIN MUTATED     2  76
  5Q GAIN WILD-TYPE  10 318
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5Q GAIN MUTATED      2   76
  5Q GAIN WILD-TYPE   10  318
     clus
vv    5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  NO                2                10
  YES              76               318
D10V11, continuous
D10V12, continuous
                   vv
clus                 R0  R1  R2  RX
  5Q GAIN MUTATED    65   1   1   1
  5Q GAIN WILD-TYPE 265   7   3  17
D10V13, multiclass
    clus
vv   5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  R0              65               265
  R1               1                 7
  R2               1                 3
  RX               1                17

Clustering(11) Variable = 6P GAIN MUTATION ANALYSIS
D11V1, survival
                   sevent
clus2                 0   1
  6P GAIN MUTATED    59  26
  6P GAIN WILD-TYPE 180 112
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
               85               292 
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
               26               112 
$`6P GAIN MUTATED`
TCGA-18-3409 TCGA-21-1072 TCGA-21-1077 TCGA-21-1079 TCGA-21-1082 TCGA-21-1083 
       79.46        99.16        34.78        31.69       119.80         8.78 
TCGA-21-5786 TCGA-21-5787 TCGA-22-1002 TCGA-22-4601 TCGA-22-4605 TCGA-22-4607 
       33.93        10.82         4.31        34.75        32.02        19.30 
TCGA-22-5482 TCGA-33-4533 TCGA-33-4582 TCGA-33-4587 TCGA-33-4589 TCGA-34-2609 
       11.74       114.05       103.53        54.44        10.98        31.23 
TCGA-34-5928 TCGA-34-7107 TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 
       18.12         1.08         7.46         7.82         6.81         0.39 
TCGA-39-5019 TCGA-39-5022 TCGA-43-2578 TCGA-43-5670 TCGA-43-6770 TCGA-46-6026 
       44.71        55.17        22.49        18.05        10.19        13.87 
TCGA-52-7809 TCGA-52-7810 TCGA-56-1622 TCGA-56-5898 TCGA-56-6545 TCGA-56-6546 
        5.42        30.31        28.93        18.25         2.04         1.02 
TCGA-56-7730 TCGA-56-7822 TCGA-56-8629 TCGA-56-A49D TCGA-58-8387 TCGA-58-8393 
        0.20         0.03         1.12         0.99        13.25        34.78 
TCGA-58-A46K TCGA-60-2703 TCGA-60-2714 TCGA-60-2715 TCGA-60-2719 TCGA-60-2723 
       34.36        96.82        50.33        35.34        42.61        35.90 
TCGA-60-2725 TCGA-66-2734 TCGA-66-2754 TCGA-66-2757 TCGA-66-2759 TCGA-66-2765 
       26.79        43.10         2.01         0.99        25.02         2.01 
TCGA-66-2766 TCGA-66-2769 TCGA-66-2777 TCGA-66-2781 TCGA-66-2791 TCGA-66-2793 
        1.02         7.07         2.01         3.98         5.03        10.06 
TCGA-68-8251 TCGA-77-7141 TCGA-77-7142 TCGA-77-7465 TCGA-77-8130 TCGA-77-8156 
        3.12         0.49        42.25        15.75        82.92         0.33 
TCGA-85-6560 TCGA-85-6798 TCGA-85-7699 TCGA-85-7843 TCGA-85-8052 TCGA-85-8072 
        0.36         1.12         0.03         1.15         0.53         1.18 
TCGA-85-8276 TCGA-85-8287 TCGA-85-8353 TCGA-85-8582 TCGA-85-A4QR TCGA-90-A4EE 
        0.43         1.45         1.78        13.91         0.82        10.88 
TCGA-94-7943 TCGA-98-7454 TCGA-98-8022 TCGA-LA-A446 TCGA-MF-A522 TCGA-NC-A5HE 
       11.70         8.42         7.33         1.18         3.02        56.61 
TCGA-NC-A5HG 
       50.86 

$`6P GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07         4.80        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       13.02        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       119.54 
TCGA-21-1071 TCGA-21-1075 TCGA-21-1076 TCGA-21-1078 TCGA-21-1080 TCGA-21-1081 
       46.88        70.13        60.89        15.55       122.43         9.30 
TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 TCGA-21-A5DI TCGA-22-0940 TCGA-22-0944 
       31.63        88.08        41.69        32.19        19.99         7.33 
TCGA-22-1000 TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 
       14.93        64.21         1.74        14.10        27.02        48.82 
TCGA-22-4591 TCGA-22-4593 TCGA-22-4594 TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 
       20.45        35.08        48.33        24.13         0.56        38.17 
TCGA-22-4604 TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       13.12         9.53        11.77        31.73        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 
       14.60        44.22         0.79        54.28        71.34        79.20 
TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-22-A5C4 
       18.84        30.08        62.86        56.32        16.60         0.95 
TCGA-33-4532 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4583 TCGA-33-4586 
        7.63        97.94        43.10       173.79       141.34        14.07 
TCGA-33-6737 TCGA-33-6738 TCGA-34-2596 TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 
       19.76        26.99         2.63        61.61        31.50        28.96 
TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 
       32.84        50.24        67.79        56.38         9.04        23.24 
TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 
       12.00        14.07        30.94         4.96         3.95         0.43 
TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 TCGA-37-5819 TCGA-39-5011 TCGA-39-5016 
        0.39         6.54         8.09         3.39        47.80        74.07 
TCGA-39-5021 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 
       68.58        70.03        60.76         1.71        24.33         1.94 
TCGA-39-5031 TCGA-39-5034 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 
       27.35        36.39        15.58        35.64        35.70        17.88 
TCGA-39-5040 TCGA-43-2576 TCGA-43-2581 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 
       17.06        40.21        38.66        27.02        33.07        11.47 
TCGA-43-6143 TCGA-43-6647 TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 
       12.36        24.89         5.42         3.78         6.97         1.58 
TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 TCGA-43-8118 TCGA-43-A474 TCGA-43-A475 
       66.51         6.64         6.35         2.93        11.61         9.73 
TCGA-43-A56V TCGA-46-3768 TCGA-46-6025 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 
        5.06         9.96        10.65         0.39         0.39        29.95 
TCGA-52-7622 TCGA-52-7811 TCGA-52-7812 TCGA-56-5897 TCGA-56-7221 TCGA-56-7222 
       17.79         8.75        27.45         0.10         0.99         0.43 
TCGA-56-7223 TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 TCGA-56-8503 TCGA-56-8504 
        0.99         1.45         1.32         0.85         1.35         5.82 
TCGA-56-8622 TCGA-56-8624 TCGA-56-8625 TCGA-56-8626 TCGA-56-8628 TCGA-56-A4BX 
        1.78         1.18         2.07         0.56         0.53         1.51 
TCGA-56-A4BY TCGA-56-A4ZJ TCGA-56-A4ZK TCGA-56-A5DS TCGA-58-8386 TCGA-58-8388 
        0.99         1.02         0.13         0.26         0.03        12.43 
TCGA-58-8390 TCGA-58-8391 TCGA-58-8392 TCGA-58-A46J TCGA-58-A46L TCGA-58-A46M 
       29.95        71.24        16.47        64.87        36.59        23.24 
TCGA-58-A46N TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2704 
       17.72        21.07         3.58        12.23        10.22        37.94 
TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 
       92.71        21.70        80.42        49.48        66.51        41.39 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2716 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 
        9.01        56.91        48.49         3.16        32.28        29.85 
TCGA-60-2724 TCGA-60-2726 TCGA-66-2727 TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 
       23.57        11.77        16.96         2.01        21.07         0.99 
TCGA-66-2753 TCGA-66-2755 TCGA-66-2756 TCGA-66-2758 TCGA-66-2763 TCGA-66-2767 
        1.02         0.92         0.99        20.98         0.99         2.01 
TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2778 TCGA-66-2780 
        2.01        23.01        19.00         3.02        19.00        12.03 
TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 
       12.00        24.95         1.94        25.97        40.01        22.98 
TCGA-66-2789 TCGA-66-2790 TCGA-66-2792 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 
        4.04        22.98        30.02        54.08         4.01        49.05 
TCGA-68-7755 TCGA-68-7756 TCGA-68-7757 TCGA-68-8250 TCGA-77-6842 TCGA-77-6843 
        2.73         6.64         6.94         8.02        29.56        73.08 
TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 TCGA-77-7140 TCGA-77-7335 
       75.09        23.28        11.18        89.95        20.78        70.09 
TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 TCGA-77-8007 TCGA-77-8008 TCGA-77-8009 
      106.95         0.16        46.78         6.51        86.76        53.95 
TCGA-77-8128 TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 
       37.81        12.59        53.92        39.09        17.69       104.09 
TCGA-77-8140 TCGA-77-8143 TCGA-77-8144 TCGA-77-8145 TCGA-77-8148 TCGA-77-8150 
       11.54        26.40        27.39         6.97         9.63        54.41 
TCGA-77-8153 TCGA-77-8154 TCGA-77-A5FZ TCGA-77-A5G3 TCGA-77-A5GB TCGA-77-A5GH 
       55.33        35.90       126.18       117.57        30.81        23.44 
TCGA-85-6561 TCGA-85-7696 TCGA-85-7697 TCGA-85-7698 TCGA-85-7844 TCGA-85-7950 
        0.79         0.59         0.33         1.61         1.25         1.97 
TCGA-85-8048 TCGA-85-8049 TCGA-85-8070 TCGA-85-8071 TCGA-85-8277 TCGA-85-8288 
        0.85         1.97        16.77        14.07         0.36         1.78 
TCGA-85-8350 TCGA-85-8351 TCGA-85-8352 TCGA-85-8354 TCGA-85-8355 TCGA-85-8479 
        1.97         1.81         2.20         2.01         0.66         0.72 
TCGA-85-8481 TCGA-85-8580 TCGA-85-8664 TCGA-85-8666 TCGA-85-A4CL TCGA-85-A50M 
        0.66        14.60         0.10        15.58         0.46         0.62 
TCGA-85-A513 TCGA-85-A53L TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 TCGA-90-7769 
        0.79         0.43        24.89         9.50         2.93        11.77 
TCGA-90-7964 TCGA-90-A4ED TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 TCGA-92-8064 
       14.07         8.02         2.70         3.48         4.01         5.26 
TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 TCGA-96-7544 TCGA-96-7545 TCGA-96-8169 
        2.27         2.86         0.16        39.88        44.15         6.18 
TCGA-96-8170 TCGA-96-A4JK TCGA-96-A4JL TCGA-98-8020 TCGA-98-8021 TCGA-98-8023 
        6.90         8.98         6.02         2.73        13.58        10.13 
TCGA-J1-A4AH TCGA-L3-A4E7 TCGA-L3-A524 TCGA-NC-A5HI 
        7.30         1.15        14.76        37.32 

  6P GAIN MUTATED 6P GAIN WILD-TYPE 
             0.03              0.03 
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
           119.80            173.79 
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
           10.880            14.085 
[1] "0.0 - 119.8 (10.9)" "0.0 - 173.8 (14.1)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
  "6P GAIN MUTATED"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56V        TCGA-46-3768        TCGA-46-6025 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-5898 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-56-7730        TCGA-56-7822        TCGA-56-8503        TCGA-56-8504 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-56-8622        TCGA-56-8624        TCGA-56-8625        TCGA-56-8626 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-56-A4BY        TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-58-8386        TCGA-58-8387        TCGA-58-8388        TCGA-58-8390 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-58-8391        TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-58-A46K        TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-60-2695        TCGA-60-2696        TCGA-60-2697        TCGA-60-2698 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-60-2703        TCGA-60-2704        TCGA-60-2706        TCGA-60-2707 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-60-2708        TCGA-60-2709        TCGA-60-2710        TCGA-60-2711 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-60-2712        TCGA-60-2713        TCGA-60-2714        TCGA-60-2715 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" 
       TCGA-60-2716        TCGA-60-2719        TCGA-60-2720        TCGA-60-2721 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-60-2722        TCGA-60-2723        TCGA-60-2724        TCGA-60-2725 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-60-2726        TCGA-66-2727        TCGA-66-2734        TCGA-66-2737 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2753        TCGA-66-2754 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-66-2755        TCGA-66-2756        TCGA-66-2757        TCGA-66-2758 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-66-2759        TCGA-66-2763        TCGA-66-2765        TCGA-66-2766 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" 
       TCGA-66-2767        TCGA-66-2768        TCGA-66-2769        TCGA-66-2770 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-66-2771        TCGA-66-2773        TCGA-66-2777        TCGA-66-2778 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-66-2780        TCGA-66-2781        TCGA-66-2782        TCGA-66-2783 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-66-2785        TCGA-66-2786        TCGA-66-2787        TCGA-66-2788 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-66-2789        TCGA-66-2790        TCGA-66-2791        TCGA-66-2792 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-66-2793        TCGA-66-2794        TCGA-66-2795        TCGA-66-2800 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-68-7755        TCGA-68-7756        TCGA-68-7757        TCGA-68-8250 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-68-8251        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8007 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-77-8008        TCGA-77-8009        TCGA-77-8128        TCGA-77-8130 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-77-8131        TCGA-77-8133        TCGA-77-8136        TCGA-77-8138 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8140        TCGA-77-8143        TCGA-77-8144 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-77-8145        TCGA-77-8148        TCGA-77-8150        TCGA-77-8153 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ        TCGA-77-A5G3 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6560        TCGA-85-6561 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-7950 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-85-8048        TCGA-85-8049        TCGA-85-8052        TCGA-85-8070 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-85-8071        TCGA-85-8072        TCGA-85-8276        TCGA-85-8277 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-85-8287        TCGA-85-8288        TCGA-85-8350        TCGA-85-8351 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-85-8352        TCGA-85-8353        TCGA-85-8354        TCGA-85-8355 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-85-8479        TCGA-85-8481        TCGA-85-8580        TCGA-85-8582 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-85-8664        TCGA-85-8666        TCGA-85-A4CL        TCGA-85-A4QR 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-85-A50M        TCGA-85-A513        TCGA-85-A53L        TCGA-90-6837 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-90-A4ED        TCGA-90-A4EE        TCGA-92-7340        TCGA-92-7341 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-92-8063        TCGA-92-8064        TCGA-92-8065        TCGA-94-7033 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-94-7557        TCGA-94-7943        TCGA-96-7544        TCGA-96-7545 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-96-8169        TCGA-96-8170        TCGA-96-A4JK        TCGA-96-A4JL 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
  "6P GAIN MUTATED"   "6P GAIN MUTATED"   "6P GAIN MUTATED"   "6P GAIN MUTATED" 
       TCGA-NC-A5HI 
"6P GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
  "6P GAIN MUTATED"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56V        TCGA-46-3768        TCGA-46-6025 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-5898 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-56-7730        TCGA-56-7822        TCGA-56-8503        TCGA-56-8504 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-56-8622        TCGA-56-8624        TCGA-56-8625        TCGA-56-8626 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-56-A4BY        TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-58-8386        TCGA-58-8387        TCGA-58-8388        TCGA-58-8390 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-58-8391        TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-58-A46K        TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-60-2695        TCGA-60-2696        TCGA-60-2697        TCGA-60-2698 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-60-2703        TCGA-60-2704        TCGA-60-2706        TCGA-60-2707 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-60-2708        TCGA-60-2709        TCGA-60-2710        TCGA-60-2711 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-60-2712        TCGA-60-2713        TCGA-60-2714        TCGA-60-2715 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" 
       TCGA-60-2716        TCGA-60-2719        TCGA-60-2720        TCGA-60-2721 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-60-2722        TCGA-60-2723        TCGA-60-2724        TCGA-60-2725 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-60-2726        TCGA-66-2727        TCGA-66-2734        TCGA-66-2737 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2753        TCGA-66-2754 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-66-2755        TCGA-66-2756        TCGA-66-2757        TCGA-66-2758 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-66-2759        TCGA-66-2763        TCGA-66-2765        TCGA-66-2766 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" 
       TCGA-66-2767        TCGA-66-2768        TCGA-66-2769        TCGA-66-2770 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-66-2771        TCGA-66-2773        TCGA-66-2777        TCGA-66-2778 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-66-2780        TCGA-66-2781        TCGA-66-2782        TCGA-66-2783 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-66-2785        TCGA-66-2786        TCGA-66-2787        TCGA-66-2788 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-66-2789        TCGA-66-2790        TCGA-66-2791        TCGA-66-2792 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-66-2793        TCGA-66-2794        TCGA-66-2795        TCGA-66-2800 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-68-7755        TCGA-68-7756        TCGA-68-7757        TCGA-68-8250 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-68-8251        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8007 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-77-8008        TCGA-77-8009        TCGA-77-8128        TCGA-77-8130 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-77-8131        TCGA-77-8133        TCGA-77-8136        TCGA-77-8138 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8140        TCGA-77-8143        TCGA-77-8144 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-77-8145        TCGA-77-8148        TCGA-77-8150        TCGA-77-8153 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ        TCGA-77-A5G3 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6560        TCGA-85-6561 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-7950 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-85-8048        TCGA-85-8049        TCGA-85-8052        TCGA-85-8070 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-85-8071        TCGA-85-8072        TCGA-85-8276        TCGA-85-8277 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-85-8287        TCGA-85-8288        TCGA-85-8350        TCGA-85-8351 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-85-8352        TCGA-85-8353        TCGA-85-8354        TCGA-85-8355 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-85-8479        TCGA-85-8481        TCGA-85-8580        TCGA-85-8582 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-85-8664        TCGA-85-8666        TCGA-85-A4CL        TCGA-85-A4QR 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-85-A50M        TCGA-85-A513        TCGA-85-A53L        TCGA-90-6837 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-90-A4ED        TCGA-90-A4EE        TCGA-92-7340        TCGA-92-7341 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-92-8063        TCGA-92-8064        TCGA-92-8065        TCGA-94-7033 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-94-7557        TCGA-94-7943        TCGA-96-7544        TCGA-96-7545 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-96-8169        TCGA-96-8170        TCGA-96-A4JK        TCGA-96-A4JL 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
  "6P GAIN MUTATED"   "6P GAIN MUTATED"   "6P GAIN MUTATED"   "6P GAIN MUTATED" 
       TCGA-NC-A5HI 
"6P GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
  "6P GAIN MUTATED"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56V        TCGA-46-3768        TCGA-46-6025 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-5898 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-56-7730        TCGA-56-7822        TCGA-56-8503        TCGA-56-8504 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-56-8622        TCGA-56-8624        TCGA-56-8625        TCGA-56-8626 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-56-A4BY        TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-58-8386        TCGA-58-8387        TCGA-58-8388        TCGA-58-8390 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-58-8391        TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-58-A46K        TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-60-2695        TCGA-60-2696        TCGA-60-2697        TCGA-60-2698 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-60-2703        TCGA-60-2704        TCGA-60-2706        TCGA-60-2707 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-60-2708        TCGA-60-2709        TCGA-60-2710        TCGA-60-2711 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-60-2712        TCGA-60-2713        TCGA-60-2714        TCGA-60-2715 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" 
       TCGA-60-2716        TCGA-60-2719        TCGA-60-2720        TCGA-60-2721 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-60-2722        TCGA-60-2723        TCGA-60-2724        TCGA-60-2725 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-60-2726        TCGA-66-2727        TCGA-66-2734        TCGA-66-2737 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2753        TCGA-66-2754 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-66-2755        TCGA-66-2756        TCGA-66-2757        TCGA-66-2758 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-66-2759        TCGA-66-2763        TCGA-66-2765        TCGA-66-2766 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" 
       TCGA-66-2767        TCGA-66-2768        TCGA-66-2769        TCGA-66-2770 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-66-2771        TCGA-66-2773        TCGA-66-2777        TCGA-66-2778 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-66-2780        TCGA-66-2781        TCGA-66-2782        TCGA-66-2783 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-66-2785        TCGA-66-2786        TCGA-66-2787        TCGA-66-2788 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-66-2789        TCGA-66-2790        TCGA-66-2791        TCGA-66-2792 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-66-2793        TCGA-66-2794        TCGA-66-2795        TCGA-66-2800 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-68-7755        TCGA-68-7756        TCGA-68-7757        TCGA-68-8250 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-68-8251        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8007 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-77-8008        TCGA-77-8009        TCGA-77-8128        TCGA-77-8130 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-77-8131        TCGA-77-8133        TCGA-77-8136        TCGA-77-8138 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8140        TCGA-77-8143        TCGA-77-8144 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-77-8145        TCGA-77-8148        TCGA-77-8150        TCGA-77-8153 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ        TCGA-77-A5G3 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6560        TCGA-85-6561 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-7950 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-85-8048        TCGA-85-8049        TCGA-85-8052        TCGA-85-8070 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-85-8071        TCGA-85-8072        TCGA-85-8276        TCGA-85-8277 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-85-8287        TCGA-85-8288        TCGA-85-8350        TCGA-85-8351 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-85-8352        TCGA-85-8353        TCGA-85-8354        TCGA-85-8355 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-85-8479        TCGA-85-8481        TCGA-85-8580        TCGA-85-8582 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-85-8664        TCGA-85-8666        TCGA-85-A4CL        TCGA-85-A4QR 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-85-A50M        TCGA-85-A513        TCGA-85-A53L        TCGA-90-6837 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-90-A4ED        TCGA-90-A4EE        TCGA-92-7340        TCGA-92-7341 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-92-8063        TCGA-92-8064        TCGA-92-8065        TCGA-94-7033 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-94-7557        TCGA-94-7943        TCGA-96-7544        TCGA-96-7545 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-96-8169        TCGA-96-8170        TCGA-96-A4JK        TCGA-96-A4JL 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
  "6P GAIN MUTATED"   "6P GAIN MUTATED"   "6P GAIN MUTATED"   "6P GAIN MUTATED" 
       TCGA-NC-A5HI 
"6P GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D11V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  6P GAIN MUTATED         0       14       29        1        11        14
  6P GAIN WILD-TYPE       1       54      104        0        39        57
                   vv
clus                STAGE IIIA STAGE IIIB STAGE IV
  6P GAIN MUTATED           13          6        1
  6P GAIN WILD-TYPE         41         14        4
D11V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  6P GAIN MUTATED    17  60   7   6
  6P GAIN WILD-TYPE  76 190  37  13
D11V4, multiclass
    clus
vv   6P GAIN MUTATED 6P GAIN WILD-TYPE
  T1              17                76
  T2              60               190
  T3               7                37
  T4               6                13
                   vv
clus                 N0  N1  N2  N3
  6P GAIN MUTATED    62  19   7   1
  6P GAIN WILD-TYPE 191  90  27   4
D11V5, multiclass
    clus
vv   6P GAIN MUTATED 6P GAIN WILD-TYPE
  N0              62               191
  N1              19                90
  N2               7                27
  N3               1                 4
                   vv
clus                 M0  M1  MX
  6P GAIN MUTATED    80   1   9
  6P GAIN WILD-TYPE 268   4  38
D11V6, multiclass
    clus
vv   6P GAIN MUTATED 6P GAIN WILD-TYPE
  M0              80               268
  M1               1                 4
  MX               9                38
D11V7, binary
                   cls
clus                  0   1
  6P GAIN MUTATED    20  70
  6P GAIN WILD-TYPE  81 235
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6P GAIN MUTATED     20   70
  6P GAIN WILD-TYPE   81  235
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  FEMALE              20                81
  MALE                70               235
D11V8, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  6P GAIN MUTATED                                       4
  6P GAIN WILD-TYPE                                     8
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  6P GAIN MUTATED                                        1
  6P GAIN WILD-TYPE                                      5
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  6P GAIN MUTATED                                         1
  6P GAIN WILD-TYPE                                       0
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  6P GAIN MUTATED                                                            84
  6P GAIN WILD-TYPE                                                         303
D11V9, multiclass
                                                             clus
vv                                                            6P GAIN MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     4
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                    1
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                   1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              84
                                                             clus
vv                                                            6P GAIN WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       8
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                      5
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                     0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               303
D11V10, binary
                   cls
clus                  0   1
  6P GAIN MUTATED     3  87
  6P GAIN WILD-TYPE   9 307
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6P GAIN MUTATED      3   87
  6P GAIN WILD-TYPE    9  307
     clus
vv    6P GAIN MUTATED 6P GAIN WILD-TYPE
  NO                3                 9
  YES              87               307
D11V11, continuous
D11V12, continuous
                   vv
clus                 R0  R1  R2  RX
  6P GAIN MUTATED    74   3   1   2
  6P GAIN WILD-TYPE 256   5   3  16
D11V13, multiclass
    clus
vv   6P GAIN MUTATED 6P GAIN WILD-TYPE
  R0              74               256
  R1               3                 5
  R2               1                 3
  RX               2                16

Clustering(12) Variable = 6Q GAIN MUTATION ANALYSIS
D12V1, survival
                   sevent
clus2                 0   1
  6Q GAIN MUTATED    49  20
  6Q GAIN WILD-TYPE 190 118
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
               69               308 
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
               20               118 
$`6Q GAIN MUTATED`
TCGA-21-1072 TCGA-21-1082 TCGA-21-1083 TCGA-21-5786 TCGA-22-4605 TCGA-22-5477 
       99.16       119.80         8.78        33.93        32.02        44.22 
TCGA-22-5482 TCGA-33-4533 TCGA-33-4547 TCGA-33-4587 TCGA-33-4589 TCGA-34-7107 
       11.74       114.05        43.10        54.44        10.98         1.08 
TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-39-5019 TCGA-43-2578 TCGA-43-3920 
        7.82         6.81         0.39        44.71        22.49        33.07 
TCGA-43-5670 TCGA-43-6770 TCGA-46-3768 TCGA-46-6026 TCGA-52-7809 TCGA-52-7810 
       18.05        10.19         9.96        13.87         5.42        30.31 
TCGA-52-7811 TCGA-56-1622 TCGA-56-6545 TCGA-56-6546 TCGA-56-7822 TCGA-56-A49D 
        8.75        28.93         2.04         1.02         0.03         0.99 
TCGA-58-8387 TCGA-58-8393 TCGA-58-A46K TCGA-60-2703 TCGA-60-2714 TCGA-60-2715 
       13.25        34.78        34.36        96.82        50.33        35.34 
TCGA-60-2719 TCGA-60-2723 TCGA-60-2725 TCGA-66-2734 TCGA-66-2757 TCGA-66-2759 
       42.61        35.90        26.79        43.10         0.99        25.02 
TCGA-66-2765 TCGA-66-2769 TCGA-66-2777 TCGA-66-2781 TCGA-66-2786 TCGA-66-2789 
        2.01         7.07         2.01         3.98        25.97         4.04 
TCGA-66-2793 TCGA-68-8251 TCGA-77-7142 TCGA-77-7465 TCGA-77-8130 TCGA-85-6798 
       10.06         3.12        42.25        15.75        82.92         1.12 
TCGA-85-7699 TCGA-85-7843 TCGA-85-7950 TCGA-85-8276 TCGA-85-8287 TCGA-85-8352 
        0.03         1.15         1.97         0.43         1.45         2.20 
TCGA-85-8353 TCGA-85-8666 TCGA-90-A4EE TCGA-94-7943 TCGA-98-7454 TCGA-98-8022 
        1.78        15.58        10.88        11.70         8.42         7.33 
TCGA-LA-A446 TCGA-MF-A522 TCGA-NC-A5HE 
        1.18         3.02        56.61 

$`6Q GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 
      119.54        46.88        70.13        60.89        34.78        15.55 
TCGA-21-1079 TCGA-21-1080 TCGA-21-1081 TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 
       31.69       122.43         9.30        31.63        88.08        41.69 
TCGA-21-5787 TCGA-21-A5DI TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 
       10.82        32.19        19.99         7.33        14.93         4.31 
TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 
       64.21         1.74        14.10        27.02        48.82        20.45 
TCGA-22-4593 TCGA-22-4594 TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 TCGA-22-4601 
       35.08        48.33        24.13         0.56        38.17        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 
       13.12        19.30         9.53        11.77        31.73        64.90 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 
       63.52        14.60         0.79        54.28        71.34        79.20 
TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-22-A5C4 
       18.84        30.08        62.86        56.32        16.60         0.95 
TCGA-33-4532 TCGA-33-4538 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 
        7.63        97.94       173.79       103.53       141.34        14.07 
TCGA-33-6737 TCGA-33-6738 TCGA-34-2596 TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 
       19.76        26.99         2.63        61.61        31.50        28.96 
TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 
       32.84        31.23        50.24        67.79        56.38         9.04 
TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 
       23.24        12.00        14.07        30.94        18.12         4.96 
TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 
        3.95         0.43         0.39         6.54         8.09         7.46 
TCGA-37-5819 TCGA-39-5011 TCGA-39-5016 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 
        3.39        47.80        74.07        68.58        55.17        70.03 
TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 
       60.76         1.71        24.33         1.94        27.35        36.39 
TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-39-5040 TCGA-43-2576 
       15.58        35.64        35.70        17.88        17.06        40.21 
TCGA-43-2581 TCGA-43-3394 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6771 
       38.66        27.02        11.47        12.36        24.89         5.42 
TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 
        3.78         6.97         1.58        66.51         6.64         6.35 
TCGA-43-8118 TCGA-43-A474 TCGA-43-A475 TCGA-43-A56V TCGA-46-6025 TCGA-51-4079 
        2.93        11.61         9.73         5.06        10.65         0.39 
TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 TCGA-52-7812 TCGA-56-5897 TCGA-56-5898 
        0.39        29.95        17.79        27.45         0.10        18.25 
TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 
        0.99         0.43         0.99         1.45         1.32         0.85 
TCGA-56-7730 TCGA-56-8503 TCGA-56-8504 TCGA-56-8622 TCGA-56-8624 TCGA-56-8625 
        0.20         1.35         5.82         1.78         1.18         2.07 
TCGA-56-8626 TCGA-56-8628 TCGA-56-8629 TCGA-56-A4BX TCGA-56-A4BY TCGA-56-A4ZJ 
        0.56         0.53         1.12         1.51         0.99         1.02 
TCGA-56-A4ZK TCGA-56-A5DS TCGA-58-8386 TCGA-58-8388 TCGA-58-8390 TCGA-58-8391 
        0.13         0.26         0.03        12.43        29.95        71.24 
TCGA-58-8392 TCGA-58-A46J TCGA-58-A46L TCGA-58-A46M TCGA-58-A46N TCGA-60-2695 
       16.47        64.87        36.59        23.24        17.72        21.07 
TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 
        3.58        12.23        10.22        37.94        92.71        21.70 
TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 
       80.42        49.48        66.51        41.39         9.01        56.91 
TCGA-60-2716 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2724 TCGA-60-2726 
       48.49         3.16        32.28        29.85        23.57        11.77 
TCGA-66-2727 TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 
       16.96         2.01        21.07         0.99         1.02         2.01 
TCGA-66-2755 TCGA-66-2756 TCGA-66-2758 TCGA-66-2763 TCGA-66-2766 TCGA-66-2767 
        0.92         0.99        20.98         0.99         1.02         2.01 
TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2778 TCGA-66-2780 
        2.01        23.01        19.00         3.02        19.00        12.03 
TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2787 TCGA-66-2788 TCGA-66-2790 
       12.00        24.95         1.94        40.01        22.98        22.98 
TCGA-66-2791 TCGA-66-2792 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 
        5.03        30.02        54.08         4.01        49.05         2.73 
TCGA-68-7756 TCGA-68-7757 TCGA-68-8250 TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 
        6.64         6.94         8.02        29.56        73.08        75.09 
TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 TCGA-77-7335 
       23.28        11.18        89.95        20.78         0.49        70.09 
TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 TCGA-77-8007 TCGA-77-8008 TCGA-77-8009 
      106.95         0.16        46.78         6.51        86.76        53.95 
TCGA-77-8128 TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 
       37.81        12.59        53.92        39.09        17.69       104.09 
TCGA-77-8140 TCGA-77-8143 TCGA-77-8144 TCGA-77-8145 TCGA-77-8148 TCGA-77-8150 
       11.54        26.40        27.39         6.97         9.63        54.41 
TCGA-77-8153 TCGA-77-8154 TCGA-77-8156 TCGA-77-A5FZ TCGA-77-A5G3 TCGA-77-A5GB 
       55.33        35.90         0.33       126.18       117.57        30.81 
TCGA-77-A5GH TCGA-85-6560 TCGA-85-6561 TCGA-85-7696 TCGA-85-7697 TCGA-85-7698 
       23.44         0.36         0.79         0.59         0.33         1.61 
TCGA-85-7844 TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 
        1.25         0.85         1.97         0.53        16.77        14.07 
TCGA-85-8072 TCGA-85-8277 TCGA-85-8288 TCGA-85-8350 TCGA-85-8351 TCGA-85-8354 
        1.18         0.36         1.78         1.97         1.81         2.01 
TCGA-85-8355 TCGA-85-8479 TCGA-85-8481 TCGA-85-8580 TCGA-85-8582 TCGA-85-8664 
        0.66         0.72         0.66        14.60        13.91         0.10 
TCGA-85-A4CL TCGA-85-A4QR TCGA-85-A50M TCGA-85-A513 TCGA-85-A53L TCGA-90-6837 
        0.46         0.82         0.62         0.79         0.43        24.89 
TCGA-90-7766 TCGA-90-7767 TCGA-90-7769 TCGA-90-7964 TCGA-90-A4ED TCGA-92-7340 
        9.50         2.93        11.77        14.07         8.02         2.70 
TCGA-92-7341 TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 
        3.48         4.01         5.26         2.27         2.86         0.16 
TCGA-96-7544 TCGA-96-7545 TCGA-96-8169 TCGA-96-8170 TCGA-96-A4JK TCGA-96-A4JL 
       39.88        44.15         6.18         6.90         8.98         6.02 
TCGA-98-8020 TCGA-98-8021 TCGA-98-8023 TCGA-J1-A4AH TCGA-L3-A4E7 TCGA-L3-A524 
        2.73        13.58        10.13         7.30         1.15        14.76 
TCGA-NC-A5HG TCGA-NC-A5HI 
       50.86        37.32 

  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
             0.03              0.03 
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
           119.80            173.79 
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
            10.98             14.07 
[1] "0.0 - 119.8 (11.0)" "0.0 - 173.8 (14.1)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "6Q GAIN MUTATED"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
  "6Q GAIN MUTATED"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56V        TCGA-46-3768        TCGA-46-6025 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-5898 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
  "6Q GAIN MUTATED"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-56-7730        TCGA-56-7822        TCGA-56-8503        TCGA-56-8504 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-56-8622        TCGA-56-8624        TCGA-56-8625        TCGA-56-8626 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-56-A4BY        TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-58-8386        TCGA-58-8387        TCGA-58-8388        TCGA-58-8390 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-58-8391        TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-58-A46K        TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-60-2695        TCGA-60-2696        TCGA-60-2697        TCGA-60-2698 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-60-2703        TCGA-60-2704        TCGA-60-2706        TCGA-60-2707 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-60-2708        TCGA-60-2709        TCGA-60-2710        TCGA-60-2711 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-60-2712        TCGA-60-2713        TCGA-60-2714        TCGA-60-2715 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED" 
       TCGA-60-2716        TCGA-60-2719        TCGA-60-2720        TCGA-60-2721 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-60-2722        TCGA-60-2723        TCGA-60-2724        TCGA-60-2725 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-60-2726        TCGA-66-2727        TCGA-66-2734        TCGA-66-2737 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2753        TCGA-66-2754 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-66-2755        TCGA-66-2756        TCGA-66-2757        TCGA-66-2758 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-66-2759        TCGA-66-2763        TCGA-66-2765        TCGA-66-2766 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-66-2767        TCGA-66-2768        TCGA-66-2769        TCGA-66-2770 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-66-2771        TCGA-66-2773        TCGA-66-2777        TCGA-66-2778 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-66-2780        TCGA-66-2781        TCGA-66-2782        TCGA-66-2783 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-66-2785        TCGA-66-2786        TCGA-66-2787        TCGA-66-2788 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-66-2789        TCGA-66-2790        TCGA-66-2791        TCGA-66-2792 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-66-2793        TCGA-66-2794        TCGA-66-2795        TCGA-66-2800 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-68-7755        TCGA-68-7756        TCGA-68-7757        TCGA-68-8250 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-68-8251        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8007 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-77-8008        TCGA-77-8009        TCGA-77-8128        TCGA-77-8130 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-77-8131        TCGA-77-8133        TCGA-77-8136        TCGA-77-8138 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8140        TCGA-77-8143        TCGA-77-8144 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-77-8145        TCGA-77-8148        TCGA-77-8150        TCGA-77-8153 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ        TCGA-77-A5G3 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6560        TCGA-85-6561 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-7950 
  "6Q GAIN MUTATED"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-85-8048        TCGA-85-8049        TCGA-85-8052        TCGA-85-8070 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-85-8071        TCGA-85-8072        TCGA-85-8276        TCGA-85-8277 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-85-8287        TCGA-85-8288        TCGA-85-8350        TCGA-85-8351 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-85-8352        TCGA-85-8353        TCGA-85-8354        TCGA-85-8355 
  "6Q GAIN MUTATED"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-85-8479        TCGA-85-8481        TCGA-85-8580        TCGA-85-8582 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-85-8664        TCGA-85-8666        TCGA-85-A4CL        TCGA-85-A4QR 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-85-A50M        TCGA-85-A513        TCGA-85-A53L        TCGA-90-6837 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-90-A4ED        TCGA-90-A4EE        TCGA-92-7340        TCGA-92-7341 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-92-8063        TCGA-92-8064        TCGA-92-8065        TCGA-94-7033 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-94-7557        TCGA-94-7943        TCGA-96-7544        TCGA-96-7545 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-96-8169        TCGA-96-8170        TCGA-96-A4JK        TCGA-96-A4JL 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
  "6Q GAIN MUTATED"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-NC-A5HI 
"6Q GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "6Q GAIN MUTATED"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
  "6Q GAIN MUTATED"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56V        TCGA-46-3768        TCGA-46-6025 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-5898 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
  "6Q GAIN MUTATED"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-56-7730        TCGA-56-7822        TCGA-56-8503        TCGA-56-8504 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-56-8622        TCGA-56-8624        TCGA-56-8625        TCGA-56-8626 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-56-A4BY        TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-58-8386        TCGA-58-8387        TCGA-58-8388        TCGA-58-8390 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-58-8391        TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-58-A46K        TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-60-2695        TCGA-60-2696        TCGA-60-2697        TCGA-60-2698 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-60-2703        TCGA-60-2704        TCGA-60-2706        TCGA-60-2707 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-60-2708        TCGA-60-2709        TCGA-60-2710        TCGA-60-2711 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-60-2712        TCGA-60-2713        TCGA-60-2714        TCGA-60-2715 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED" 
       TCGA-60-2716        TCGA-60-2719        TCGA-60-2720        TCGA-60-2721 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-60-2722        TCGA-60-2723        TCGA-60-2724        TCGA-60-2725 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-60-2726        TCGA-66-2727        TCGA-66-2734        TCGA-66-2737 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2753        TCGA-66-2754 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-66-2755        TCGA-66-2756        TCGA-66-2757        TCGA-66-2758 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-66-2759        TCGA-66-2763        TCGA-66-2765        TCGA-66-2766 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-66-2767        TCGA-66-2768        TCGA-66-2769        TCGA-66-2770 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-66-2771        TCGA-66-2773        TCGA-66-2777        TCGA-66-2778 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-66-2780        TCGA-66-2781        TCGA-66-2782        TCGA-66-2783 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-66-2785        TCGA-66-2786        TCGA-66-2787        TCGA-66-2788 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-66-2789        TCGA-66-2790        TCGA-66-2791        TCGA-66-2792 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-66-2793        TCGA-66-2794        TCGA-66-2795        TCGA-66-2800 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-68-7755        TCGA-68-7756        TCGA-68-7757        TCGA-68-8250 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-68-8251        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8007 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-77-8008        TCGA-77-8009        TCGA-77-8128        TCGA-77-8130 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-77-8131        TCGA-77-8133        TCGA-77-8136        TCGA-77-8138 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8140        TCGA-77-8143        TCGA-77-8144 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-77-8145        TCGA-77-8148        TCGA-77-8150        TCGA-77-8153 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ        TCGA-77-A5G3 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6560        TCGA-85-6561 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-7950 
  "6Q GAIN MUTATED"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-85-8048        TCGA-85-8049        TCGA-85-8052        TCGA-85-8070 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-85-8071        TCGA-85-8072        TCGA-85-8276        TCGA-85-8277 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-85-8287        TCGA-85-8288        TCGA-85-8350        TCGA-85-8351 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-85-8352        TCGA-85-8353        TCGA-85-8354        TCGA-85-8355 
  "6Q GAIN MUTATED"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-85-8479        TCGA-85-8481        TCGA-85-8580        TCGA-85-8582 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-85-8664        TCGA-85-8666        TCGA-85-A4CL        TCGA-85-A4QR 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-85-A50M        TCGA-85-A513        TCGA-85-A53L        TCGA-90-6837 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-90-A4ED        TCGA-90-A4EE        TCGA-92-7340        TCGA-92-7341 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-92-8063        TCGA-92-8064        TCGA-92-8065        TCGA-94-7033 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-94-7557        TCGA-94-7943        TCGA-96-7544        TCGA-96-7545 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-96-8169        TCGA-96-8170        TCGA-96-A4JK        TCGA-96-A4JL 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
  "6Q GAIN MUTATED"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-NC-A5HI 
"6Q GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "6Q GAIN MUTATED"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
  "6Q GAIN MUTATED"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56V        TCGA-46-3768        TCGA-46-6025 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-5898 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
  "6Q GAIN MUTATED"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-56-7730        TCGA-56-7822        TCGA-56-8503        TCGA-56-8504 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-56-8622        TCGA-56-8624        TCGA-56-8625        TCGA-56-8626 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-56-A4BY        TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-58-8386        TCGA-58-8387        TCGA-58-8388        TCGA-58-8390 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-58-8391        TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-58-A46K        TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-60-2695        TCGA-60-2696        TCGA-60-2697        TCGA-60-2698 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-60-2703        TCGA-60-2704        TCGA-60-2706        TCGA-60-2707 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-60-2708        TCGA-60-2709        TCGA-60-2710        TCGA-60-2711 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-60-2712        TCGA-60-2713        TCGA-60-2714        TCGA-60-2715 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED" 
       TCGA-60-2716        TCGA-60-2719        TCGA-60-2720        TCGA-60-2721 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-60-2722        TCGA-60-2723        TCGA-60-2724        TCGA-60-2725 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-60-2726        TCGA-66-2727        TCGA-66-2734        TCGA-66-2737 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2753        TCGA-66-2754 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-66-2755        TCGA-66-2756        TCGA-66-2757        TCGA-66-2758 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-66-2759        TCGA-66-2763        TCGA-66-2765        TCGA-66-2766 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-66-2767        TCGA-66-2768        TCGA-66-2769        TCGA-66-2770 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-66-2771        TCGA-66-2773        TCGA-66-2777        TCGA-66-2778 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-66-2780        TCGA-66-2781        TCGA-66-2782        TCGA-66-2783 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-66-2785        TCGA-66-2786        TCGA-66-2787        TCGA-66-2788 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-66-2789        TCGA-66-2790        TCGA-66-2791        TCGA-66-2792 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-66-2793        TCGA-66-2794        TCGA-66-2795        TCGA-66-2800 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-68-7755        TCGA-68-7756        TCGA-68-7757        TCGA-68-8250 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-68-8251        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8007 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-77-8008        TCGA-77-8009        TCGA-77-8128        TCGA-77-8130 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-77-8131        TCGA-77-8133        TCGA-77-8136        TCGA-77-8138 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8140        TCGA-77-8143        TCGA-77-8144 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-77-8145        TCGA-77-8148        TCGA-77-8150        TCGA-77-8153 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ        TCGA-77-A5G3 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6560        TCGA-85-6561 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-7950 
  "6Q GAIN MUTATED"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-85-8048        TCGA-85-8049        TCGA-85-8052        TCGA-85-8070 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-85-8071        TCGA-85-8072        TCGA-85-8276        TCGA-85-8277 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-85-8287        TCGA-85-8288        TCGA-85-8350        TCGA-85-8351 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-85-8352        TCGA-85-8353        TCGA-85-8354        TCGA-85-8355 
  "6Q GAIN MUTATED"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-85-8479        TCGA-85-8481        TCGA-85-8580        TCGA-85-8582 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-85-8664        TCGA-85-8666        TCGA-85-A4CL        TCGA-85-A4QR 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-85-A50M        TCGA-85-A513        TCGA-85-A53L        TCGA-90-6837 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-90-A4ED        TCGA-90-A4EE        TCGA-92-7340        TCGA-92-7341 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-92-8063        TCGA-92-8064        TCGA-92-8065        TCGA-94-7033 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-94-7557        TCGA-94-7943        TCGA-96-7544        TCGA-96-7545 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-96-8169        TCGA-96-8170        TCGA-96-A4JK        TCGA-96-A4JL 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
  "6Q GAIN MUTATED"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-NC-A5HI 
"6Q GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D12V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  6Q GAIN MUTATED         0       12       29        1         8        11
  6Q GAIN WILD-TYPE       1       56      104        0        42        60
                   vv
clus                STAGE IIIA STAGE IIIB STAGE IV
  6Q GAIN MUTATED            7          6        0
  6Q GAIN WILD-TYPE         47         14        5
D12V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  6Q GAIN MUTATED    15  48   6   5
  6Q GAIN WILD-TYPE  78 202  38  14
D12V4, multiclass
    clus
vv   6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  T1              15                78
  T2              48               202
  T3               6                38
  T4               5                14
                   vv
clus                 N0  N1  N2  N3
  6Q GAIN MUTATED    52  17   3   1
  6Q GAIN WILD-TYPE 201  92  31   4
D12V5, multiclass
    clus
vv   6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  N0              52               201
  N1              17                92
  N2               3                31
  N3               1                 4
                   vv
clus                 M0  M1  MX
  6Q GAIN MUTATED    65   0   9
  6Q GAIN WILD-TYPE 283   5  38
D12V6, multiclass
    clus
vv   6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  M0              65               283
  M1               0                 5
  MX               9                38
D12V7, binary
                   cls
clus                  0   1
  6Q GAIN MUTATED    18  56
  6Q GAIN WILD-TYPE  83 249
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6Q GAIN MUTATED     18   56
  6Q GAIN WILD-TYPE   83  249
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  FEMALE              18                83
  MALE                56               249
D12V8, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  6Q GAIN MUTATED                                       2
  6Q GAIN WILD-TYPE                                    10
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  6Q GAIN MUTATED                                        0
  6Q GAIN WILD-TYPE                                      6
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  6Q GAIN MUTATED                                         1
  6Q GAIN WILD-TYPE                                       0
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  6Q GAIN MUTATED                                                            71
  6Q GAIN WILD-TYPE                                                         316
D12V9, multiclass
                                                             clus
vv                                                            6Q GAIN MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     2
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                    0
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                   1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              71
                                                             clus
vv                                                            6Q GAIN WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      10
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                      6
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                     0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               316
D12V10, binary
                   cls
clus                  0   1
  6Q GAIN MUTATED     2  72
  6Q GAIN WILD-TYPE  10 322
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6Q GAIN MUTATED      2   72
  6Q GAIN WILD-TYPE   10  322
     clus
vv    6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  NO                2                10
  YES              72               322
D12V11, continuous
D12V12, continuous
                   vv
clus                 R0  R1  R2  RX
  6Q GAIN MUTATED    60   2   1   3
  6Q GAIN WILD-TYPE 270   6   3  15
D12V13, multiclass
    clus
vv   6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  R0              60               270
  R1               2                 6
  R2               1                 3
  RX               3                15

Clustering(13) Variable = 7P GAIN MUTATION ANALYSIS
D13V1, survival
                   sevent
clus2                 0   1
  7P GAIN MUTATED   122  61
  7P GAIN WILD-TYPE 117  77
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
              183               194 
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
               61                77 
$`7P GAIN MUTATED`
TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3411 TCGA-18-3412 TCGA-18-3414 
        4.47        81.07        79.46        46.52        11.34        13.02 
TCGA-18-3417 TCGA-18-3421 TCGA-18-4083 TCGA-18-4721 TCGA-18-5592 TCGA-21-1070 
       24.92        43.76         6.15        90.51         3.02       119.54 
TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1079 TCGA-21-1081 TCGA-21-5783 
       99.16        70.13        60.89        31.69         9.30        88.08 
TCGA-21-5784 TCGA-22-0944 TCGA-22-1011 TCGA-22-1012 TCGA-22-4591 TCGA-22-4593 
       41.69         7.33         1.74        14.10        20.45        35.08 
TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 TCGA-22-4604 TCGA-22-4605 TCGA-22-5471 
       24.13         0.56        38.17        13.12        32.02        31.73 
TCGA-22-5472 TCGA-22-5473 TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 TCGA-22-5482 
       64.90        63.52        44.22         0.79        54.28        11.74 
TCGA-22-5483 TCGA-22-5491 TCGA-22-A5C4 TCGA-33-4533 TCGA-33-4538 TCGA-33-4566 
       18.84        56.32         0.95       114.05        97.94       173.79 
TCGA-33-4582 TCGA-33-4586 TCGA-33-4589 TCGA-34-2596 TCGA-34-2605 TCGA-34-2609 
      103.53        14.07        10.98         2.63        28.96        31.23 
TCGA-34-5231 TCGA-34-5234 TCGA-34-5236 TCGA-34-5240 TCGA-34-5241 TCGA-34-5928 
       50.24        56.38         9.04        12.00        14.07        18.12 
TCGA-37-3783 TCGA-37-3792 TCGA-37-4130 TCGA-37-4135 TCGA-37-4141 TCGA-39-5011 
        3.95         0.39         8.09         6.81         0.39        47.80 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5031 TCGA-39-5035 TCGA-39-5037 TCGA-43-2576 
       74.07        44.71        27.35        15.58        35.70        40.21 
TCGA-43-2581 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-5670 TCGA-43-6647 
       38.66        27.02        33.07        11.47        18.05        24.89 
TCGA-43-6771 TCGA-43-6773 TCGA-43-7657 TCGA-43-A474 TCGA-43-A475 TCGA-43-A56V 
        5.42         3.78         1.58        11.61         9.73         5.06 
TCGA-46-3768 TCGA-46-6025 TCGA-51-4079 TCGA-51-4081 TCGA-52-7809 TCGA-56-7221 
        9.96        10.65         0.39        29.95         5.42         0.99 
TCGA-56-7223 TCGA-56-7579 TCGA-56-7582 TCGA-56-8504 TCGA-56-8624 TCGA-56-8626 
        0.99         1.45         0.85         5.82         1.18         0.56 
TCGA-56-A49D TCGA-56-A4BX TCGA-58-8391 TCGA-58-8392 TCGA-58-8393 TCGA-58-A46M 
        0.99         1.51        71.24        16.47        34.78        23.24 
TCGA-58-A46N TCGA-60-2704 TCGA-60-2706 TCGA-60-2708 TCGA-60-2709 TCGA-60-2711 
       17.72        37.94        92.71        80.42        49.48        41.39 
TCGA-60-2713 TCGA-60-2714 TCGA-60-2719 TCGA-60-2722 TCGA-60-2723 TCGA-60-2726 
       56.91        50.33        42.61        29.85        35.90        11.77 
TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 TCGA-66-2755 TCGA-66-2759 
       43.10         2.01        21.07         0.99         0.92        25.02 
TCGA-66-2763 TCGA-66-2766 TCGA-66-2767 TCGA-66-2770 TCGA-66-2771 TCGA-66-2777 
        0.99         1.02         2.01        23.01        19.00         2.01 
TCGA-66-2780 TCGA-66-2782 TCGA-66-2785 TCGA-66-2787 TCGA-66-2791 TCGA-66-2795 
       12.03        12.00         1.94        40.01         5.03         4.01 
TCGA-66-2800 TCGA-68-7755 TCGA-68-8250 TCGA-77-6845 TCGA-77-7138 TCGA-77-7140 
       49.05         2.73         8.02        23.28        11.18        20.78 
TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 TCGA-77-8007 TCGA-77-8008 TCGA-77-8009 
        0.16        46.78        15.75         6.51        86.76        53.95 
TCGA-77-8128 TCGA-77-8130 TCGA-77-8133 TCGA-77-8136 TCGA-77-8139 TCGA-77-8148 
       37.81        82.92        53.92        39.09       104.09         9.63 
TCGA-77-8150 TCGA-77-8156 TCGA-77-A5G3 TCGA-77-A5GB TCGA-85-6561 TCGA-85-6798 
       54.41         0.33       117.57        30.81         0.79         1.12 
TCGA-85-7696 TCGA-85-7697 TCGA-85-7843 TCGA-85-7844 TCGA-85-7950 TCGA-85-8049 
        0.59         0.33         1.15         1.25         1.97         1.97 
TCGA-85-8052 TCGA-85-8072 TCGA-85-8276 TCGA-85-8352 TCGA-85-8354 TCGA-85-8664 
        0.53         1.18         0.43         2.20         2.01         0.10 
TCGA-85-8666 TCGA-85-A4QR TCGA-85-A50M TCGA-85-A513 TCGA-85-A53L TCGA-90-7769 
       15.58         0.82         0.62         0.79         0.43        11.77 
TCGA-90-A4ED TCGA-90-A4EE TCGA-92-7341 TCGA-92-8064 TCGA-94-7557 TCGA-96-7545 
        8.02        10.88         3.48         5.26         0.16        44.15 
TCGA-96-A4JK TCGA-96-A4JL TCGA-98-8023 TCGA-L3-A4E7 TCGA-L3-A524 TCGA-MF-A522 
        8.98         6.02        10.13         1.15        14.76         3.02 
TCGA-NC-A5HE TCGA-NC-A5HG TCGA-NC-A5HI 
       56.61        50.86        37.32 

$`7P GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3410 TCGA-18-3415 TCGA-18-3416 TCGA-18-3419 TCGA-18-4086 
       12.16         4.80        59.51        28.34         1.61         2.79 
TCGA-18-5595 TCGA-21-1071 TCGA-21-1077 TCGA-21-1078 TCGA-21-1080 TCGA-21-1082 
       27.16        46.88        34.78        15.55       122.43       119.80 
TCGA-21-1083 TCGA-21-5782 TCGA-21-5786 TCGA-21-5787 TCGA-21-A5DI TCGA-22-0940 
        8.78        31.63        33.93        10.82        32.19        19.99 
TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 TCGA-22-1016 TCGA-22-1017 TCGA-22-4594 
       14.93         4.31        64.21        27.02        48.82        48.33 
TCGA-22-4601 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 TCGA-22-5474 TCGA-22-5480 
       34.75        19.30         9.53        11.77        14.60        71.34 
TCGA-22-5481 TCGA-22-5485 TCGA-22-5489 TCGA-22-5492 TCGA-33-4532 TCGA-33-4547 
       79.20        30.08        62.86        16.60         7.63        43.10 
TCGA-33-4583 TCGA-33-4587 TCGA-33-6737 TCGA-33-6738 TCGA-34-2600 TCGA-34-2604 
      141.34        54.44        19.76        26.99        61.61        31.50 
TCGA-34-2608 TCGA-34-5232 TCGA-34-5239 TCGA-34-5927 TCGA-34-5929 TCGA-34-7107 
       32.84        67.79        23.24        30.94         4.96         1.08 
TCGA-37-3789 TCGA-37-4129 TCGA-37-4132 TCGA-37-4133 TCGA-37-5819 TCGA-39-5021 
        0.43         6.54         7.46         7.82         3.39        68.58 
TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 
       55.17        70.03        60.76         1.71        24.33         1.94 
TCGA-39-5034 TCGA-39-5036 TCGA-39-5039 TCGA-39-5040 TCGA-43-2578 TCGA-43-6143 
       36.39        35.64        17.88        17.06        22.49        12.36 
TCGA-43-6770 TCGA-43-7656 TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 TCGA-43-8118 
       10.19         6.97        66.51         6.64         6.35         2.93 
TCGA-46-6026 TCGA-51-4080 TCGA-52-7622 TCGA-52-7810 TCGA-52-7811 TCGA-52-7812 
       13.87         0.39        17.79        30.31         8.75        27.45 
TCGA-56-1622 TCGA-56-5897 TCGA-56-5898 TCGA-56-6545 TCGA-56-6546 TCGA-56-7222 
       28.93         0.10        18.25         2.04         1.02         0.43 
TCGA-56-7580 TCGA-56-7730 TCGA-56-7822 TCGA-56-8503 TCGA-56-8622 TCGA-56-8625 
        1.32         0.20         0.03         1.35         1.78         2.07 
TCGA-56-8628 TCGA-56-8629 TCGA-56-A4BY TCGA-56-A4ZJ TCGA-56-A4ZK TCGA-56-A5DS 
        0.53         1.12         0.99         1.02         0.13         0.26 
TCGA-58-8386 TCGA-58-8387 TCGA-58-8388 TCGA-58-8390 TCGA-58-A46J TCGA-58-A46K 
        0.03        13.25        12.43        29.95        64.87        34.36 
TCGA-58-A46L TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 
       36.59        21.07         3.58        12.23        10.22        96.82 
TCGA-60-2707 TCGA-60-2710 TCGA-60-2712 TCGA-60-2715 TCGA-60-2716 TCGA-60-2720 
       21.70        66.51         9.01        35.34        48.49         3.16 
TCGA-60-2721 TCGA-60-2724 TCGA-60-2725 TCGA-66-2727 TCGA-66-2753 TCGA-66-2754 
       32.28        23.57        26.79        16.96         1.02         2.01 
TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2765 TCGA-66-2768 TCGA-66-2769 
        0.99         0.99        20.98         2.01         2.01         7.07 
TCGA-66-2773 TCGA-66-2778 TCGA-66-2781 TCGA-66-2783 TCGA-66-2786 TCGA-66-2788 
        3.02        19.00         3.98        24.95        25.97        22.98 
TCGA-66-2789 TCGA-66-2790 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-68-7756 
        4.04        22.98        30.02        10.06        54.08         6.64 
TCGA-68-7757 TCGA-68-8251 TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 TCGA-77-7139 
        6.94         3.12        29.56        73.08        75.09        89.95 
TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 TCGA-77-8131 TCGA-77-8138 
        0.49        42.25        70.09       106.95        12.59        17.69 
TCGA-77-8140 TCGA-77-8143 TCGA-77-8144 TCGA-77-8145 TCGA-77-8153 TCGA-77-8154 
       11.54        26.40        27.39         6.97        55.33        35.90 
TCGA-77-A5FZ TCGA-77-A5GH TCGA-85-6560 TCGA-85-7698 TCGA-85-7699 TCGA-85-8048 
      126.18        23.44         0.36         1.61         0.03         0.85 
TCGA-85-8070 TCGA-85-8071 TCGA-85-8277 TCGA-85-8287 TCGA-85-8288 TCGA-85-8350 
       16.77        14.07         0.36         1.45         1.78         1.97 
TCGA-85-8351 TCGA-85-8353 TCGA-85-8355 TCGA-85-8479 TCGA-85-8481 TCGA-85-8580 
        1.81         1.78         0.66         0.72         0.66        14.60 
TCGA-85-8582 TCGA-85-A4CL TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 TCGA-90-7964 
       13.91         0.46        24.89         9.50         2.93        14.07 
TCGA-92-7340 TCGA-92-8063 TCGA-92-8065 TCGA-94-7033 TCGA-94-7943 TCGA-96-7544 
        2.70         4.01         2.27         2.86        11.70        39.88 
TCGA-96-8169 TCGA-96-8170 TCGA-98-7454 TCGA-98-8020 TCGA-98-8021 TCGA-98-8022 
        6.18         6.90         8.42         2.73        13.58         7.33 
TCGA-J1-A4AH TCGA-LA-A446 
        7.30         1.18 

  7P GAIN MUTATED 7P GAIN WILD-TYPE 
             0.10              0.03 
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
           173.79            141.34 
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
           14.070            13.415 
[1] "0.1 - 173.8 (14.1)" "0.0 - 141.3 (13.4)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-43-A475        TCGA-43-A56V        TCGA-46-3768        TCGA-46-6025 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-5898 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-56-7730        TCGA-56-7822        TCGA-56-8503        TCGA-56-8504 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-56-8622        TCGA-56-8624        TCGA-56-8625        TCGA-56-8626 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-56-A4BY        TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-58-8386        TCGA-58-8387        TCGA-58-8388        TCGA-58-8390 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-58-8391        TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-58-A46K        TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-60-2695        TCGA-60-2696        TCGA-60-2697        TCGA-60-2698 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-60-2703        TCGA-60-2704        TCGA-60-2706        TCGA-60-2707 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-60-2708        TCGA-60-2709        TCGA-60-2710        TCGA-60-2711 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-60-2712        TCGA-60-2713        TCGA-60-2714        TCGA-60-2715 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-60-2716        TCGA-60-2719        TCGA-60-2720        TCGA-60-2721 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-60-2722        TCGA-60-2723        TCGA-60-2724        TCGA-60-2725 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-60-2726        TCGA-66-2727        TCGA-66-2734        TCGA-66-2737 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2753        TCGA-66-2754 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-66-2755        TCGA-66-2756        TCGA-66-2757        TCGA-66-2758 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-66-2759        TCGA-66-2763        TCGA-66-2765        TCGA-66-2766 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-66-2767        TCGA-66-2768        TCGA-66-2769        TCGA-66-2770 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-66-2771        TCGA-66-2773        TCGA-66-2777        TCGA-66-2778 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-66-2780        TCGA-66-2781        TCGA-66-2782        TCGA-66-2783 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-66-2785        TCGA-66-2786        TCGA-66-2787        TCGA-66-2788 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-66-2789        TCGA-66-2790        TCGA-66-2791        TCGA-66-2792 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-66-2793        TCGA-66-2794        TCGA-66-2795        TCGA-66-2800 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-68-7755        TCGA-68-7756        TCGA-68-7757        TCGA-68-8250 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-68-8251        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8007 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-77-8008        TCGA-77-8009        TCGA-77-8128        TCGA-77-8130 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-77-8131        TCGA-77-8133        TCGA-77-8136        TCGA-77-8138 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8140        TCGA-77-8143        TCGA-77-8144 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-77-8145        TCGA-77-8148        TCGA-77-8150        TCGA-77-8153 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ        TCGA-77-A5G3 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6560        TCGA-85-6561 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-7950 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-85-8048        TCGA-85-8049        TCGA-85-8052        TCGA-85-8070 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-85-8071        TCGA-85-8072        TCGA-85-8276        TCGA-85-8277 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-85-8287        TCGA-85-8288        TCGA-85-8350        TCGA-85-8351 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-85-8352        TCGA-85-8353        TCGA-85-8354        TCGA-85-8355 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-85-8479        TCGA-85-8481        TCGA-85-8580        TCGA-85-8582 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-85-8664        TCGA-85-8666        TCGA-85-A4CL        TCGA-85-A4QR 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-85-A50M        TCGA-85-A513        TCGA-85-A53L        TCGA-90-6837 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-90-A4ED        TCGA-90-A4EE        TCGA-92-7340        TCGA-92-7341 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-92-8063        TCGA-92-8064        TCGA-92-8065        TCGA-94-7033 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-94-7557        TCGA-94-7943        TCGA-96-7544        TCGA-96-7545 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-96-8169        TCGA-96-8170        TCGA-96-A4JK        TCGA-96-A4JL 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-NC-A5HI 
  "7P GAIN MUTATED" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-43-A475        TCGA-43-A56V        TCGA-46-3768        TCGA-46-6025 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-5898 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-56-7730        TCGA-56-7822        TCGA-56-8503        TCGA-56-8504 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-56-8622        TCGA-56-8624        TCGA-56-8625        TCGA-56-8626 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-56-A4BY        TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-58-8386        TCGA-58-8387        TCGA-58-8388        TCGA-58-8390 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-58-8391        TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-58-A46K        TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-60-2695        TCGA-60-2696        TCGA-60-2697        TCGA-60-2698 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-60-2703        TCGA-60-2704        TCGA-60-2706        TCGA-60-2707 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-60-2708        TCGA-60-2709        TCGA-60-2710        TCGA-60-2711 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-60-2712        TCGA-60-2713        TCGA-60-2714        TCGA-60-2715 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-60-2716        TCGA-60-2719        TCGA-60-2720        TCGA-60-2721 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-60-2722        TCGA-60-2723        TCGA-60-2724        TCGA-60-2725 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-60-2726        TCGA-66-2727        TCGA-66-2734        TCGA-66-2737 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2753        TCGA-66-2754 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-66-2755        TCGA-66-2756        TCGA-66-2757        TCGA-66-2758 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-66-2759        TCGA-66-2763        TCGA-66-2765        TCGA-66-2766 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-66-2767        TCGA-66-2768        TCGA-66-2769        TCGA-66-2770 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-66-2771        TCGA-66-2773        TCGA-66-2777        TCGA-66-2778 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-66-2780        TCGA-66-2781        TCGA-66-2782        TCGA-66-2783 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-66-2785        TCGA-66-2786        TCGA-66-2787        TCGA-66-2788 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-66-2789        TCGA-66-2790        TCGA-66-2791        TCGA-66-2792 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-66-2793        TCGA-66-2794        TCGA-66-2795        TCGA-66-2800 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-68-7755        TCGA-68-7756        TCGA-68-7757        TCGA-68-8250 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-68-8251        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8007 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-77-8008        TCGA-77-8009        TCGA-77-8128        TCGA-77-8130 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-77-8131        TCGA-77-8133        TCGA-77-8136        TCGA-77-8138 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8140        TCGA-77-8143        TCGA-77-8144 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-77-8145        TCGA-77-8148        TCGA-77-8150        TCGA-77-8153 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ        TCGA-77-A5G3 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6560        TCGA-85-6561 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-7950 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-85-8048        TCGA-85-8049        TCGA-85-8052        TCGA-85-8070 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-85-8071        TCGA-85-8072        TCGA-85-8276        TCGA-85-8277 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-85-8287        TCGA-85-8288        TCGA-85-8350        TCGA-85-8351 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-85-8352        TCGA-85-8353        TCGA-85-8354        TCGA-85-8355 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-85-8479        TCGA-85-8481        TCGA-85-8580        TCGA-85-8582 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-85-8664        TCGA-85-8666        TCGA-85-A4CL        TCGA-85-A4QR 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-85-A50M        TCGA-85-A513        TCGA-85-A53L        TCGA-90-6837 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-90-A4ED        TCGA-90-A4EE        TCGA-92-7340        TCGA-92-7341 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-92-8063        TCGA-92-8064        TCGA-92-8065        TCGA-94-7033 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-94-7557        TCGA-94-7943        TCGA-96-7544        TCGA-96-7545 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-96-8169        TCGA-96-8170        TCGA-96-A4JK        TCGA-96-A4JL 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-NC-A5HI 
  "7P GAIN MUTATED" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-43-A475        TCGA-43-A56V        TCGA-46-3768        TCGA-46-6025 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-5898 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-56-7730        TCGA-56-7822        TCGA-56-8503        TCGA-56-8504 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-56-8622        TCGA-56-8624        TCGA-56-8625        TCGA-56-8626 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-56-A4BY        TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-58-8386        TCGA-58-8387        TCGA-58-8388        TCGA-58-8390 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-58-8391        TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-58-A46K        TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-60-2695        TCGA-60-2696        TCGA-60-2697        TCGA-60-2698 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-60-2703        TCGA-60-2704        TCGA-60-2706        TCGA-60-2707 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-60-2708        TCGA-60-2709        TCGA-60-2710        TCGA-60-2711 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-60-2712        TCGA-60-2713        TCGA-60-2714        TCGA-60-2715 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-60-2716        TCGA-60-2719        TCGA-60-2720        TCGA-60-2721 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-60-2722        TCGA-60-2723        TCGA-60-2724        TCGA-60-2725 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-60-2726        TCGA-66-2727        TCGA-66-2734        TCGA-66-2737 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2753        TCGA-66-2754 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-66-2755        TCGA-66-2756        TCGA-66-2757        TCGA-66-2758 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-66-2759        TCGA-66-2763        TCGA-66-2765        TCGA-66-2766 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-66-2767        TCGA-66-2768        TCGA-66-2769        TCGA-66-2770 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-66-2771        TCGA-66-2773        TCGA-66-2777        TCGA-66-2778 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-66-2780        TCGA-66-2781        TCGA-66-2782        TCGA-66-2783 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-66-2785        TCGA-66-2786        TCGA-66-2787        TCGA-66-2788 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-66-2789        TCGA-66-2790        TCGA-66-2791        TCGA-66-2792 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-66-2793        TCGA-66-2794        TCGA-66-2795        TCGA-66-2800 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-68-7755        TCGA-68-7756        TCGA-68-7757        TCGA-68-8250 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-68-8251        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8007 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-77-8008        TCGA-77-8009        TCGA-77-8128        TCGA-77-8130 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-77-8131        TCGA-77-8133        TCGA-77-8136        TCGA-77-8138 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8140        TCGA-77-8143        TCGA-77-8144 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-77-8145        TCGA-77-8148        TCGA-77-8150        TCGA-77-8153 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ        TCGA-77-A5G3 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6560        TCGA-85-6561 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-7950 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-85-8048        TCGA-85-8049        TCGA-85-8052        TCGA-85-8070 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-85-8071        TCGA-85-8072        TCGA-85-8276        TCGA-85-8277 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-85-8287        TCGA-85-8288        TCGA-85-8350        TCGA-85-8351 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-85-8352        TCGA-85-8353        TCGA-85-8354        TCGA-85-8355 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-85-8479        TCGA-85-8481        TCGA-85-8580        TCGA-85-8582 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-85-8664        TCGA-85-8666        TCGA-85-A4CL        TCGA-85-A4QR 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-85-A50M        TCGA-85-A513        TCGA-85-A53L        TCGA-90-6837 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-90-A4ED        TCGA-90-A4EE        TCGA-92-7340        TCGA-92-7341 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-92-8063        TCGA-92-8064        TCGA-92-8065        TCGA-94-7033 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-94-7557        TCGA-94-7943        TCGA-96-7544        TCGA-96-7545 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-96-8169        TCGA-96-8170        TCGA-96-A4JK        TCGA-96-A4JL 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-NC-A5HI 
  "7P GAIN MUTATED" 
[1] "hr=" "1.4"
D13V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  7P GAIN MUTATED         0       22       69        0        26        42
  7P GAIN WILD-TYPE       1       46       64        1        24        29
                   vv
clus                STAGE IIIA STAGE IIIB STAGE IV
  7P GAIN MUTATED           26          7        3
  7P GAIN WILD-TYPE         28         13        2
D13V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  7P GAIN MUTATED    33 131  28   5
  7P GAIN WILD-TYPE  60 119  16  14
D13V4, multiclass
    clus
vv   7P GAIN MUTATED 7P GAIN WILD-TYPE
  T1              33                60
  T2             131               119
  T3              28                16
  T4               5                14
                   vv
clus                 N0  N1  N2  N3
  7P GAIN MUTATED   117  62  14   2
  7P GAIN WILD-TYPE 136  47  20   3
D13V5, multiclass
    clus
vv   7P GAIN MUTATED 7P GAIN WILD-TYPE
  N0             117               136
  N1              62                47
  N2              14                20
  N3               2                 3
                   vv
clus                 M0  M1  MX
  7P GAIN MUTATED   171   3  20
  7P GAIN WILD-TYPE 177   2  27
D13V6, multiclass
    clus
vv   7P GAIN MUTATED 7P GAIN WILD-TYPE
  M0             171               177
  M1               3                 2
  MX              20                27
D13V7, binary
                   cls
clus                  0   1
  7P GAIN MUTATED    43 154
  7P GAIN WILD-TYPE  58 151
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7P GAIN MUTATED     43  154
  7P GAIN WILD-TYPE   58  151
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  FEMALE              43                58
  MALE               154               151
D13V8, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  7P GAIN MUTATED                                       6
  7P GAIN WILD-TYPE                                     6
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  7P GAIN MUTATED                                        1
  7P GAIN WILD-TYPE                                      5
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  7P GAIN MUTATED                                         0
  7P GAIN WILD-TYPE                                       1
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  7P GAIN MUTATED                                                           190
  7P GAIN WILD-TYPE                                                         197
D13V9, multiclass
                                                             clus
vv                                                            7P GAIN MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     6
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                    1
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             190
                                                             clus
vv                                                            7P GAIN WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       6
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                      5
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               197
D13V10, binary
                   cls
clus                  0   1
  7P GAIN MUTATED     4 193
  7P GAIN WILD-TYPE   8 201
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7P GAIN MUTATED      4  193
  7P GAIN WILD-TYPE    8  201
     clus
vv    7P GAIN MUTATED 7P GAIN WILD-TYPE
  NO                4                 8
  YES             193               201
D13V11, continuous
D13V12, continuous
                   vv
clus                 R0  R1  R2  RX
  7P GAIN MUTATED   164   4   1   7
  7P GAIN WILD-TYPE 166   4   3  11
D13V13, multiclass
    clus
vv   7P GAIN MUTATED 7P GAIN WILD-TYPE
  R0             164               166
  R1               4                 4
  R2               1                 3
  RX               7                11

Clustering(14) Variable = 7Q GAIN MUTATION ANALYSIS
D14V1, survival
                   sevent
clus2                 0   1
  7Q GAIN MUTATED   112  61
  7Q GAIN WILD-TYPE 127  77
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
              173               204 
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
               61                77 
$`7Q GAIN MUTATED`
TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3411 TCGA-18-3412 TCGA-18-3414 
        4.47        81.07        79.46        46.52        11.34        13.02 
TCGA-18-3417 TCGA-18-4083 TCGA-18-4721 TCGA-21-1070 TCGA-21-1075 TCGA-21-1076 
       24.92         6.15        90.51       119.54        70.13        60.89 
TCGA-21-1077 TCGA-21-1079 TCGA-21-1081 TCGA-21-5783 TCGA-21-5787 TCGA-21-A5DI 
       34.78        31.69         9.30        88.08        10.82        32.19 
TCGA-22-1011 TCGA-22-1012 TCGA-22-4591 TCGA-22-4593 TCGA-22-4594 TCGA-22-4595 
        1.74        14.10        20.45        35.08        48.33        24.13 
TCGA-22-4596 TCGA-22-4599 TCGA-22-4604 TCGA-22-4605 TCGA-22-5471 TCGA-22-5472 
        0.56        38.17        13.12        32.02        31.73        64.90 
TCGA-22-5473 TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 TCGA-22-5482 TCGA-22-5483 
       63.52        44.22         0.79        54.28        11.74        18.84 
TCGA-22-5491 TCGA-22-5492 TCGA-22-A5C4 TCGA-33-4533 TCGA-33-4538 TCGA-33-4586 
       56.32        16.60         0.95       114.05        97.94        14.07 
TCGA-33-4589 TCGA-33-6738 TCGA-34-2596 TCGA-34-2600 TCGA-34-2605 TCGA-34-2609 
       10.98        26.99         2.63        61.61        28.96        31.23 
TCGA-34-5231 TCGA-34-5236 TCGA-34-5240 TCGA-34-5241 TCGA-34-5928 TCGA-34-7107 
       50.24         9.04        12.00        14.07        18.12         1.08 
TCGA-37-3783 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-39-5011 TCGA-39-5019 
        3.95         7.82         6.81         0.39        47.80        44.71 
TCGA-39-5027 TCGA-39-5031 TCGA-39-5035 TCGA-39-5037 TCGA-43-3394 TCGA-43-3920 
       60.76        27.35        15.58        35.70        27.02        33.07 
TCGA-43-5668 TCGA-43-6647 TCGA-43-6773 TCGA-43-7657 TCGA-43-A474 TCGA-43-A475 
       11.47        24.89         3.78         1.58        11.61         9.73 
TCGA-43-A56V TCGA-46-3768 TCGA-46-6025 TCGA-51-4079 TCGA-51-4081 TCGA-52-7809 
        5.06         9.96        10.65         0.39        29.95         5.42 
TCGA-52-7810 TCGA-56-5898 TCGA-56-7221 TCGA-56-7223 TCGA-56-7579 TCGA-56-7582 
       30.31        18.25         0.99         0.99         1.45         0.85 
TCGA-56-8504 TCGA-56-A49D TCGA-56-A4BX TCGA-58-8386 TCGA-58-8392 TCGA-58-8393 
        5.82         0.99         1.51         0.03        16.47        34.78 
TCGA-58-A46K TCGA-58-A46M TCGA-58-A46N TCGA-60-2704 TCGA-60-2706 TCGA-60-2708 
       34.36        23.24        17.72        37.94        92.71        80.42 
TCGA-60-2709 TCGA-60-2711 TCGA-60-2713 TCGA-60-2714 TCGA-60-2719 TCGA-60-2722 
       49.48        41.39        56.91        50.33        42.61        29.85 
TCGA-60-2723 TCGA-60-2726 TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 TCGA-66-2755 
       35.90        11.77        43.10         2.01        21.07         0.92 
TCGA-66-2758 TCGA-66-2763 TCGA-66-2766 TCGA-66-2767 TCGA-66-2770 TCGA-66-2771 
       20.98         0.99         1.02         2.01        23.01        19.00 
TCGA-66-2777 TCGA-66-2780 TCGA-66-2782 TCGA-66-2785 TCGA-66-2787 TCGA-66-2791 
        2.01        12.03        12.00         1.94        40.01         5.03 
TCGA-66-2792 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 TCGA-68-8250 
       30.02        54.08         4.01        49.05         2.73         8.02 
TCGA-77-6845 TCGA-77-7141 TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 TCGA-77-8007 
       23.28         0.49         0.16        46.78        15.75         6.51 
TCGA-77-8009 TCGA-77-8128 TCGA-77-8130 TCGA-77-8133 TCGA-77-8143 TCGA-77-8148 
       53.95        37.81        82.92        53.92        26.40         9.63 
TCGA-77-8150 TCGA-77-8153 TCGA-77-8156 TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 
       54.41        55.33         0.33         0.79         1.12         0.59 
TCGA-85-7843 TCGA-85-7950 TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 TCGA-85-8072 
        1.15         1.97         1.97         0.53        16.77         1.18 
TCGA-85-8276 TCGA-85-8277 TCGA-85-8352 TCGA-85-8354 TCGA-85-8666 TCGA-85-A4QR 
        0.43         0.36         2.20         2.01        15.58         0.82 
TCGA-85-A50M TCGA-90-7769 TCGA-90-A4ED TCGA-90-A4EE TCGA-92-7341 TCGA-96-7545 
        0.62        11.77         8.02        10.88         3.48        44.15 
TCGA-96-8169 TCGA-96-A4JK TCGA-96-A4JL TCGA-98-8023 TCGA-L3-A4E7 TCGA-L3-A524 
        6.18         8.98         6.02        10.13         1.15        14.76 
TCGA-LA-A446 TCGA-MF-A522 TCGA-NC-A5HE TCGA-NC-A5HG TCGA-NC-A5HI 
        1.18         3.02        56.61        50.86        37.32 

$`7Q GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3410 TCGA-18-3415 TCGA-18-3416 TCGA-18-3419 TCGA-18-3421 
       12.16         4.80        59.51        28.34         1.61        43.76 
TCGA-18-4086 TCGA-18-5592 TCGA-18-5595 TCGA-21-1071 TCGA-21-1072 TCGA-21-1078 
        2.79         3.02        27.16        46.88        99.16        15.55 
TCGA-21-1080 TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 
      122.43       119.80         8.78        31.63        41.69        33.93 
TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 TCGA-22-1016 
       19.99         7.33        14.93         4.31        64.21        27.02 
TCGA-22-1017 TCGA-22-4601 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 TCGA-22-5474 
       48.82        34.75        19.30         9.53        11.77        14.60 
TCGA-22-5480 TCGA-22-5481 TCGA-22-5485 TCGA-22-5489 TCGA-33-4532 TCGA-33-4547 
       71.34        79.20        30.08        62.86         7.63        43.10 
TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4587 TCGA-33-6737 TCGA-34-2604 
      173.79       103.53       141.34        54.44        19.76        31.50 
TCGA-34-2608 TCGA-34-5232 TCGA-34-5234 TCGA-34-5239 TCGA-34-5927 TCGA-34-5929 
       32.84        67.79        56.38        23.24        30.94         4.96 
TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 TCGA-37-5819 
        0.43         0.39         6.54         8.09         7.46         3.39 
TCGA-39-5016 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5028 TCGA-39-5029 
       74.07        68.58        55.17        70.03         1.71        24.33 
TCGA-39-5030 TCGA-39-5034 TCGA-39-5036 TCGA-39-5039 TCGA-39-5040 TCGA-43-2576 
        1.94        36.39        35.64        17.88        17.06        40.21 
TCGA-43-2578 TCGA-43-2581 TCGA-43-5670 TCGA-43-6143 TCGA-43-6770 TCGA-43-6771 
       22.49        38.66        18.05        12.36        10.19         5.42 
TCGA-43-7656 TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 TCGA-43-8118 TCGA-46-6026 
        6.97        66.51         6.64         6.35         2.93        13.87 
TCGA-51-4080 TCGA-52-7622 TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 
        0.39        17.79         8.75        27.45        28.93         0.10 
TCGA-56-6545 TCGA-56-6546 TCGA-56-7222 TCGA-56-7580 TCGA-56-7730 TCGA-56-7822 
        2.04         1.02         0.43         1.32         0.20         0.03 
TCGA-56-8503 TCGA-56-8622 TCGA-56-8624 TCGA-56-8625 TCGA-56-8626 TCGA-56-8628 
        1.35         1.78         1.18         2.07         0.56         0.53 
TCGA-56-8629 TCGA-56-A4BY TCGA-56-A4ZJ TCGA-56-A4ZK TCGA-56-A5DS TCGA-58-8387 
        1.12         0.99         1.02         0.13         0.26        13.25 
TCGA-58-8388 TCGA-58-8390 TCGA-58-8391 TCGA-58-A46J TCGA-58-A46L TCGA-60-2695 
       12.43        29.95        71.24        64.87        36.59        21.07 
TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 TCGA-60-2707 TCGA-60-2710 
        3.58        12.23        10.22        96.82        21.70        66.51 
TCGA-60-2712 TCGA-60-2715 TCGA-60-2716 TCGA-60-2720 TCGA-60-2721 TCGA-60-2724 
        9.01        35.34        48.49         3.16        32.28        23.57 
TCGA-60-2725 TCGA-66-2727 TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 TCGA-66-2756 
       26.79        16.96         0.99         1.02         2.01         0.99 
TCGA-66-2757 TCGA-66-2759 TCGA-66-2765 TCGA-66-2768 TCGA-66-2769 TCGA-66-2773 
        0.99        25.02         2.01         2.01         7.07         3.02 
TCGA-66-2778 TCGA-66-2781 TCGA-66-2783 TCGA-66-2786 TCGA-66-2788 TCGA-66-2789 
       19.00         3.98        24.95        25.97        22.98         4.04 
TCGA-66-2790 TCGA-66-2793 TCGA-68-7756 TCGA-68-7757 TCGA-68-8251 TCGA-77-6842 
       22.98        10.06         6.64         6.94         3.12        29.56 
TCGA-77-6843 TCGA-77-6844 TCGA-77-7138 TCGA-77-7139 TCGA-77-7140 TCGA-77-7142 
       73.08        75.09        11.18        89.95        20.78        42.25 
TCGA-77-7335 TCGA-77-7337 TCGA-77-8008 TCGA-77-8131 TCGA-77-8136 TCGA-77-8138 
       70.09       106.95        86.76        12.59        39.09        17.69 
TCGA-77-8139 TCGA-77-8140 TCGA-77-8144 TCGA-77-8145 TCGA-77-8154 TCGA-77-A5FZ 
      104.09        11.54        27.39         6.97        35.90       126.18 
TCGA-77-A5G3 TCGA-77-A5GB TCGA-77-A5GH TCGA-85-6560 TCGA-85-7697 TCGA-85-7698 
      117.57        30.81        23.44         0.36         0.33         1.61 
TCGA-85-7699 TCGA-85-7844 TCGA-85-8048 TCGA-85-8071 TCGA-85-8287 TCGA-85-8288 
        0.03         1.25         0.85        14.07         1.45         1.78 
TCGA-85-8350 TCGA-85-8351 TCGA-85-8353 TCGA-85-8355 TCGA-85-8479 TCGA-85-8481 
        1.97         1.81         1.78         0.66         0.72         0.66 
TCGA-85-8580 TCGA-85-8582 TCGA-85-8664 TCGA-85-A4CL TCGA-85-A513 TCGA-85-A53L 
       14.60        13.91         0.10         0.46         0.79         0.43 
TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 TCGA-90-7964 TCGA-92-7340 TCGA-92-8063 
       24.89         9.50         2.93        14.07         2.70         4.01 
TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 TCGA-94-7943 TCGA-96-7544 
        5.26         2.27         2.86         0.16        11.70        39.88 
TCGA-96-8170 TCGA-98-7454 TCGA-98-8020 TCGA-98-8021 TCGA-98-8022 TCGA-J1-A4AH 
        6.90         8.42         2.73        13.58         7.33         7.30 

  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
             0.03              0.03 
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
           119.54            173.79 
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
           14.760            12.395 
[1] "0.0 - 119.5 (14.8)" "0.0 - 173.8 (12.4)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-43-A475        TCGA-43-A56V        TCGA-46-3768        TCGA-46-6025 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-5898 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-56-7730        TCGA-56-7822        TCGA-56-8503        TCGA-56-8504 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-56-8622        TCGA-56-8624        TCGA-56-8625        TCGA-56-8626 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-56-A4BY        TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-58-8386        TCGA-58-8387        TCGA-58-8388        TCGA-58-8390 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-58-8391        TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-58-A46K        TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-60-2695        TCGA-60-2696        TCGA-60-2697        TCGA-60-2698 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-60-2703        TCGA-60-2704        TCGA-60-2706        TCGA-60-2707 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-60-2708        TCGA-60-2709        TCGA-60-2710        TCGA-60-2711 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-60-2712        TCGA-60-2713        TCGA-60-2714        TCGA-60-2715 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-60-2716        TCGA-60-2719        TCGA-60-2720        TCGA-60-2721 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-60-2722        TCGA-60-2723        TCGA-60-2724        TCGA-60-2725 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-60-2726        TCGA-66-2727        TCGA-66-2734        TCGA-66-2737 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2753        TCGA-66-2754 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-66-2755        TCGA-66-2756        TCGA-66-2757        TCGA-66-2758 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-66-2759        TCGA-66-2763        TCGA-66-2765        TCGA-66-2766 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-66-2767        TCGA-66-2768        TCGA-66-2769        TCGA-66-2770 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-66-2771        TCGA-66-2773        TCGA-66-2777        TCGA-66-2778 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-66-2780        TCGA-66-2781        TCGA-66-2782        TCGA-66-2783 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-66-2785        TCGA-66-2786        TCGA-66-2787        TCGA-66-2788 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-66-2789        TCGA-66-2790        TCGA-66-2791        TCGA-66-2792 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-66-2793        TCGA-66-2794        TCGA-66-2795        TCGA-66-2800 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-68-7755        TCGA-68-7756        TCGA-68-7757        TCGA-68-8250 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-68-8251        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8007 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-77-8008        TCGA-77-8009        TCGA-77-8128        TCGA-77-8130 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-77-8131        TCGA-77-8133        TCGA-77-8136        TCGA-77-8138 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8140        TCGA-77-8143        TCGA-77-8144 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-77-8145        TCGA-77-8148        TCGA-77-8150        TCGA-77-8153 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ        TCGA-77-A5G3 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6560        TCGA-85-6561 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-7950 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-85-8048        TCGA-85-8049        TCGA-85-8052        TCGA-85-8070 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-85-8071        TCGA-85-8072        TCGA-85-8276        TCGA-85-8277 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-85-8287        TCGA-85-8288        TCGA-85-8350        TCGA-85-8351 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-85-8352        TCGA-85-8353        TCGA-85-8354        TCGA-85-8355 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-85-8479        TCGA-85-8481        TCGA-85-8580        TCGA-85-8582 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-85-8664        TCGA-85-8666        TCGA-85-A4CL        TCGA-85-A4QR 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-85-A50M        TCGA-85-A513        TCGA-85-A53L        TCGA-90-6837 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-90-A4ED        TCGA-90-A4EE        TCGA-92-7340        TCGA-92-7341 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-92-8063        TCGA-92-8064        TCGA-92-8065        TCGA-94-7033 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-94-7557        TCGA-94-7943        TCGA-96-7544        TCGA-96-7545 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-96-8169        TCGA-96-8170        TCGA-96-A4JK        TCGA-96-A4JL 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-NC-A5HI 
  "7Q GAIN MUTATED" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-43-A475        TCGA-43-A56V        TCGA-46-3768        TCGA-46-6025 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-5898 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-56-7730        TCGA-56-7822        TCGA-56-8503        TCGA-56-8504 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-56-8622        TCGA-56-8624        TCGA-56-8625        TCGA-56-8626 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-56-A4BY        TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-58-8386        TCGA-58-8387        TCGA-58-8388        TCGA-58-8390 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-58-8391        TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-58-A46K        TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-60-2695        TCGA-60-2696        TCGA-60-2697        TCGA-60-2698 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-60-2703        TCGA-60-2704        TCGA-60-2706        TCGA-60-2707 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-60-2708        TCGA-60-2709        TCGA-60-2710        TCGA-60-2711 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-60-2712        TCGA-60-2713        TCGA-60-2714        TCGA-60-2715 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-60-2716        TCGA-60-2719        TCGA-60-2720        TCGA-60-2721 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-60-2722        TCGA-60-2723        TCGA-60-2724        TCGA-60-2725 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-60-2726        TCGA-66-2727        TCGA-66-2734        TCGA-66-2737 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2753        TCGA-66-2754 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-66-2755        TCGA-66-2756        TCGA-66-2757        TCGA-66-2758 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-66-2759        TCGA-66-2763        TCGA-66-2765        TCGA-66-2766 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-66-2767        TCGA-66-2768        TCGA-66-2769        TCGA-66-2770 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-66-2771        TCGA-66-2773        TCGA-66-2777        TCGA-66-2778 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-66-2780        TCGA-66-2781        TCGA-66-2782        TCGA-66-2783 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-66-2785        TCGA-66-2786        TCGA-66-2787        TCGA-66-2788 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-66-2789        TCGA-66-2790        TCGA-66-2791        TCGA-66-2792 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-66-2793        TCGA-66-2794        TCGA-66-2795        TCGA-66-2800 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-68-7755        TCGA-68-7756        TCGA-68-7757        TCGA-68-8250 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-68-8251        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8007 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-77-8008        TCGA-77-8009        TCGA-77-8128        TCGA-77-8130 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-77-8131        TCGA-77-8133        TCGA-77-8136        TCGA-77-8138 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8140        TCGA-77-8143        TCGA-77-8144 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-77-8145        TCGA-77-8148        TCGA-77-8150        TCGA-77-8153 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ        TCGA-77-A5G3 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6560        TCGA-85-6561 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-7950 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-85-8048        TCGA-85-8049        TCGA-85-8052        TCGA-85-8070 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-85-8071        TCGA-85-8072        TCGA-85-8276        TCGA-85-8277 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-85-8287        TCGA-85-8288        TCGA-85-8350        TCGA-85-8351 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-85-8352        TCGA-85-8353        TCGA-85-8354        TCGA-85-8355 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-85-8479        TCGA-85-8481        TCGA-85-8580        TCGA-85-8582 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-85-8664        TCGA-85-8666        TCGA-85-A4CL        TCGA-85-A4QR 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-85-A50M        TCGA-85-A513        TCGA-85-A53L        TCGA-90-6837 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-90-A4ED        TCGA-90-A4EE        TCGA-92-7340        TCGA-92-7341 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-92-8063        TCGA-92-8064        TCGA-92-8065        TCGA-94-7033 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-94-7557        TCGA-94-7943        TCGA-96-7544        TCGA-96-7545 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-96-8169        TCGA-96-8170        TCGA-96-A4JK        TCGA-96-A4JL 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-NC-A5HI 
  "7Q GAIN MUTATED" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-43-A475        TCGA-43-A56V        TCGA-46-3768        TCGA-46-6025 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-5898 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-56-7730        TCGA-56-7822        TCGA-56-8503        TCGA-56-8504 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-56-8622        TCGA-56-8624        TCGA-56-8625        TCGA-56-8626 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-56-A4BY        TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-58-8386        TCGA-58-8387        TCGA-58-8388        TCGA-58-8390 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-58-8391        TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-58-A46K        TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-60-2695        TCGA-60-2696        TCGA-60-2697        TCGA-60-2698 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-60-2703        TCGA-60-2704        TCGA-60-2706        TCGA-60-2707 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-60-2708        TCGA-60-2709        TCGA-60-2710        TCGA-60-2711 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-60-2712        TCGA-60-2713        TCGA-60-2714        TCGA-60-2715 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-60-2716        TCGA-60-2719        TCGA-60-2720        TCGA-60-2721 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-60-2722        TCGA-60-2723        TCGA-60-2724        TCGA-60-2725 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-60-2726        TCGA-66-2727        TCGA-66-2734        TCGA-66-2737 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2753        TCGA-66-2754 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-66-2755        TCGA-66-2756        TCGA-66-2757        TCGA-66-2758 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-66-2759        TCGA-66-2763        TCGA-66-2765        TCGA-66-2766 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-66-2767        TCGA-66-2768        TCGA-66-2769        TCGA-66-2770 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-66-2771        TCGA-66-2773        TCGA-66-2777        TCGA-66-2778 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-66-2780        TCGA-66-2781        TCGA-66-2782        TCGA-66-2783 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-66-2785        TCGA-66-2786        TCGA-66-2787        TCGA-66-2788 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-66-2789        TCGA-66-2790        TCGA-66-2791        TCGA-66-2792 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-66-2793        TCGA-66-2794        TCGA-66-2795        TCGA-66-2800 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-68-7755        TCGA-68-7756        TCGA-68-7757        TCGA-68-8250 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-68-8251        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8007 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-77-8008        TCGA-77-8009        TCGA-77-8128        TCGA-77-8130 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-77-8131        TCGA-77-8133        TCGA-77-8136        TCGA-77-8138 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8140        TCGA-77-8143        TCGA-77-8144 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-77-8145        TCGA-77-8148        TCGA-77-8150        TCGA-77-8153 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ        TCGA-77-A5G3 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6560        TCGA-85-6561 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-7950 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-85-8048        TCGA-85-8049        TCGA-85-8052        TCGA-85-8070 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-85-8071        TCGA-85-8072        TCGA-85-8276        TCGA-85-8277 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-85-8287        TCGA-85-8288        TCGA-85-8350        TCGA-85-8351 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-85-8352        TCGA-85-8353        TCGA-85-8354        TCGA-85-8355 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-85-8479        TCGA-85-8481        TCGA-85-8580        TCGA-85-8582 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-85-8664        TCGA-85-8666        TCGA-85-A4CL        TCGA-85-A4QR 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-85-A50M        TCGA-85-A513        TCGA-85-A53L        TCGA-90-6837 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-90-A4ED        TCGA-90-A4EE        TCGA-92-7340        TCGA-92-7341 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-92-8063        TCGA-92-8064        TCGA-92-8065        TCGA-94-7033 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-94-7557        TCGA-94-7943        TCGA-96-7544        TCGA-96-7545 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-96-8169        TCGA-96-8170        TCGA-96-A4JK        TCGA-96-A4JL 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-NC-A5HI 
  "7Q GAIN MUTATED" 
[1] "hr=" "1"  
D14V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  7Q GAIN MUTATED         1       21       61        1        22        36
  7Q GAIN WILD-TYPE       0       47       72        0        28        35
                   vv
clus                STAGE IIIA STAGE IIIB STAGE IV
  7Q GAIN MUTATED           29          9        4
  7Q GAIN WILD-TYPE         25         11        1
D14V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  7Q GAIN MUTATED    34 118  27   7
  7Q GAIN WILD-TYPE  59 132  17  12
D14V4, multiclass
    clus
vv   7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  T1              34                59
  T2             118               132
  T3              27                17
  T4               7                12
                   vv
clus                 N0  N1  N2  N3
  7Q GAIN MUTATED   108  57  18   2
  7Q GAIN WILD-TYPE 145  52  16   3
D14V5, multiclass
    clus
vv   7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  N0             108               145
  N1              57                52
  N2              18                16
  N3               2                 3
                   vv
clus                 M0  M1  MX
  7Q GAIN MUTATED   161   4  18
  7Q GAIN WILD-TYPE 187   1  29
D14V6, multiclass
    clus
vv   7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  M0             161               187
  M1               4                 1
  MX              18                29
D14V7, binary
                   cls
clus                  0   1
  7Q GAIN MUTATED    40 146
  7Q GAIN WILD-TYPE  61 159
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7Q GAIN MUTATED     40  146
  7Q GAIN WILD-TYPE   61  159
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  FEMALE              40                61
  MALE               146               159
D14V8, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  7Q GAIN MUTATED                                       6
  7Q GAIN WILD-TYPE                                     6
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  7Q GAIN MUTATED                                        1
  7Q GAIN WILD-TYPE                                      5
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  7Q GAIN MUTATED                                         0
  7Q GAIN WILD-TYPE                                       1
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  7Q GAIN MUTATED                                                           179
  7Q GAIN WILD-TYPE                                                         208
D14V9, multiclass
                                                             clus
vv                                                            7Q GAIN MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     6
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                    1
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             179
                                                             clus
vv                                                            7Q GAIN WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       6
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                      5
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               208
D14V10, binary
                   cls
clus                  0   1
  7Q GAIN MUTATED     4 182
  7Q GAIN WILD-TYPE   8 212
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7Q GAIN MUTATED      4  182
  7Q GAIN WILD-TYPE    8  212
     clus
vv    7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  NO                4                 8
  YES             182               212
D14V11, continuous
D14V12, continuous
                   vv
clus                 R0  R1  R2  RX
  7Q GAIN MUTATED   153   4   1   5
  7Q GAIN WILD-TYPE 177   4   3  13
D14V13, multiclass
    clus
vv   7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  R0             153               177
  R1               4                 4
  R2               1                 3
  RX               5                13

Clustering(15) Variable = 8P GAIN MUTATION ANALYSIS
D15V1, survival
                   sevent
clus2                 0   1
  8P GAIN MUTATED    64  36
  8P GAIN WILD-TYPE 175 102
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
              100               277 
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
               36               102 
$`8P GAIN MUTATED`
TCGA-18-3407 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 TCGA-18-3414 TCGA-18-3416 
        4.47        79.46         4.80        46.52        13.02        28.34 
TCGA-18-3421 TCGA-21-1070 TCGA-21-1075 TCGA-21-1082 TCGA-21-5783 TCGA-21-5784 
       43.76       119.54        70.13       119.80        88.08        41.69 
TCGA-22-1011 TCGA-22-4596 TCGA-22-5472 TCGA-22-5473 TCGA-22-5479 TCGA-22-5482 
        1.74         0.56        64.90        63.52        54.28        11.74 
TCGA-22-5489 TCGA-22-A5C4 TCGA-33-4532 TCGA-33-4533 TCGA-33-4583 TCGA-33-4587 
       62.86         0.95         7.63       114.05       141.34        54.44 
TCGA-33-6737 TCGA-34-2605 TCGA-34-5231 TCGA-34-5232 TCGA-34-5239 TCGA-34-7107 
       19.76        28.96        50.24        67.79        23.24         1.08 
TCGA-37-4132 TCGA-37-5819 TCGA-39-5019 TCGA-39-5022 TCGA-39-5024 TCGA-39-5028 
        7.46         3.39        44.71        55.17        70.03         1.71 
TCGA-39-5029 TCGA-39-5034 TCGA-39-5040 TCGA-43-2578 TCGA-43-3920 TCGA-43-5670 
       24.33        36.39        17.06        22.49        33.07        18.05 
TCGA-43-6647 TCGA-43-A56V TCGA-52-7811 TCGA-56-7730 TCGA-56-A49D TCGA-56-A4ZK 
       24.89         5.06         8.75         0.20         0.99         0.13 
TCGA-60-2695 TCGA-60-2708 TCGA-60-2712 TCGA-60-2714 TCGA-60-2719 TCGA-60-2720 
       21.07        80.42         9.01        50.33        42.61         3.16 
TCGA-60-2722 TCGA-60-2725 TCGA-66-2742 TCGA-66-2744 TCGA-66-2756 TCGA-66-2763 
       29.85        26.79        21.07         0.99         0.99         0.99 
TCGA-66-2767 TCGA-66-2769 TCGA-66-2770 TCGA-66-2773 TCGA-66-2777 TCGA-66-2788 
        2.01         7.07        23.01         3.02         2.01        22.98 
TCGA-66-2789 TCGA-66-2793 TCGA-66-2800 TCGA-68-7756 TCGA-68-8251 TCGA-77-7139 
        4.04        10.06        49.05         6.64         3.12        89.95 
TCGA-77-7141 TCGA-77-7335 TCGA-77-7463 TCGA-77-8007 TCGA-77-8136 TCGA-77-8138 
        0.49        70.09        46.78         6.51        39.09        17.69 
TCGA-77-8140 TCGA-77-8143 TCGA-77-8150 TCGA-77-A5GH TCGA-85-6560 TCGA-85-7699 
       11.54        26.40        54.41        23.44         0.36         0.03 
TCGA-85-8052 TCGA-85-8287 TCGA-85-8481 TCGA-85-8580 TCGA-85-8582 TCGA-85-8664 
        0.53         1.45         0.66        14.60        13.91         0.10 
TCGA-85-A513 TCGA-90-7769 TCGA-90-A4EE TCGA-92-7340 TCGA-94-7943 TCGA-96-7545 
        0.79        11.77        10.88         2.70        11.70        44.15 
TCGA-96-8169 TCGA-98-8023 TCGA-L3-A4E7 TCGA-L3-A524 
        6.18        10.13         1.15        14.76 

$`8P GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3408 TCGA-18-3412 TCGA-18-3415 TCGA-18-3417 TCGA-18-3419 
       12.16        81.07        11.34        59.51        24.92         1.61 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1071 
        6.15         2.79        90.51         3.02        27.16        46.88 
TCGA-21-1072 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1079 TCGA-21-1080 
       99.16        60.89        34.78        15.55        31.69       122.43 
TCGA-21-1081 TCGA-21-1083 TCGA-21-5782 TCGA-21-5786 TCGA-21-5787 TCGA-21-A5DI 
        9.30         8.78        31.63        33.93        10.82        32.19 
TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 TCGA-22-1012 
       19.99         7.33        14.93         4.31        64.21        14.10 
TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 TCGA-22-4593 TCGA-22-4594 TCGA-22-4595 
       27.02        48.82        20.45        35.08        48.33        24.13 
TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 
       38.17        34.75        13.12        32.02        19.30         9.53 
TCGA-22-4613 TCGA-22-5471 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 
       11.77        31.73        14.60        44.22         0.79        71.34 
TCGA-22-5481 TCGA-22-5483 TCGA-22-5485 TCGA-22-5491 TCGA-22-5492 TCGA-33-4538 
       79.20        18.84        30.08        56.32        16.60        97.94 
TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4586 TCGA-33-4589 TCGA-33-6738 
       43.10       173.79       103.53        14.07        10.98        26.99 
TCGA-34-2596 TCGA-34-2600 TCGA-34-2604 TCGA-34-2608 TCGA-34-2609 TCGA-34-5234 
        2.63        61.61        31.50        32.84        31.23        56.38 
TCGA-34-5236 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 
        9.04        12.00        14.07        30.94        18.12         4.96 
TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 TCGA-37-4133 
        3.95         0.43         0.39         6.54         8.09         7.82 
TCGA-37-4135 TCGA-37-4141 TCGA-39-5011 TCGA-39-5016 TCGA-39-5021 TCGA-39-5027 
        6.81         0.39        47.80        74.07        68.58        60.76 
TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 
        1.94        27.35        15.58        35.64        35.70        17.88 
TCGA-43-2576 TCGA-43-2581 TCGA-43-3394 TCGA-43-5668 TCGA-43-6143 TCGA-43-6770 
       40.21        38.66        27.02        11.47        12.36        10.19 
TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 
        5.42         3.78         6.97         1.58        66.51         6.64 
TCGA-43-8116 TCGA-43-8118 TCGA-43-A474 TCGA-43-A475 TCGA-46-3768 TCGA-46-6025 
        6.35         2.93        11.61         9.73         9.96        10.65 
TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 
       13.87         0.39         0.39        29.95        17.79         5.42 
TCGA-52-7810 TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 TCGA-56-5898 TCGA-56-6545 
       30.31        27.45        28.93         0.10        18.25         2.04 
TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 TCGA-56-7580 
        1.02         0.99         0.43         0.99         1.45         1.32 
TCGA-56-7582 TCGA-56-7822 TCGA-56-8503 TCGA-56-8504 TCGA-56-8622 TCGA-56-8624 
        0.85         0.03         1.35         5.82         1.78         1.18 
TCGA-56-8625 TCGA-56-8626 TCGA-56-8628 TCGA-56-8629 TCGA-56-A4BX TCGA-56-A4BY 
        2.07         0.56         0.53         1.12         1.51         0.99 
TCGA-56-A4ZJ TCGA-56-A5DS TCGA-58-8386 TCGA-58-8387 TCGA-58-8388 TCGA-58-8390 
        1.02         0.26         0.03        13.25        12.43        29.95 
TCGA-58-8391 TCGA-58-8392 TCGA-58-8393 TCGA-58-A46J TCGA-58-A46K TCGA-58-A46L 
       71.24        16.47        34.78        64.87        34.36        36.59 
TCGA-58-A46M TCGA-58-A46N TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 
       23.24        17.72         3.58        12.23        10.22        96.82 
TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 
       37.94        92.71        21.70        49.48        66.51        41.39 
TCGA-60-2713 TCGA-60-2715 TCGA-60-2716 TCGA-60-2721 TCGA-60-2723 TCGA-60-2724 
       56.91        35.34        48.49        32.28        35.90        23.57 
TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 TCGA-66-2753 TCGA-66-2754 
       11.77        16.96        43.10         2.01         1.02         2.01 
TCGA-66-2755 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2765 TCGA-66-2766 
        0.92         0.99        20.98        25.02         2.01         1.02 
TCGA-66-2768 TCGA-66-2771 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 
        2.01        19.00        19.00        12.03         3.98        12.00 
TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2790 TCGA-66-2791 
       24.95         1.94        25.97        40.01        22.98         5.03 
TCGA-66-2792 TCGA-66-2794 TCGA-66-2795 TCGA-68-7755 TCGA-68-7757 TCGA-68-8250 
       30.02        54.08         4.01         2.73         6.94         8.02 
TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 TCGA-77-7140 
       29.56        73.08        75.09        23.28        11.18        20.78 
TCGA-77-7142 TCGA-77-7337 TCGA-77-7338 TCGA-77-7465 TCGA-77-8008 TCGA-77-8009 
       42.25       106.95         0.16        15.75        86.76        53.95 
TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 TCGA-77-8133 TCGA-77-8139 TCGA-77-8144 
       37.81        82.92        12.59        53.92       104.09        27.39 
TCGA-77-8145 TCGA-77-8148 TCGA-77-8153 TCGA-77-8154 TCGA-77-8156 TCGA-77-A5FZ 
        6.97         9.63        55.33        35.90         0.33       126.18 
TCGA-77-A5G3 TCGA-77-A5GB TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 TCGA-85-7697 
      117.57        30.81         0.79         1.12         0.59         0.33 
TCGA-85-7698 TCGA-85-7843 TCGA-85-7844 TCGA-85-7950 TCGA-85-8048 TCGA-85-8049 
        1.61         1.15         1.25         1.97         0.85         1.97 
TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 TCGA-85-8276 TCGA-85-8277 TCGA-85-8288 
       16.77        14.07         1.18         0.43         0.36         1.78 
TCGA-85-8350 TCGA-85-8351 TCGA-85-8352 TCGA-85-8353 TCGA-85-8354 TCGA-85-8355 
        1.97         1.81         2.20         1.78         2.01         0.66 
TCGA-85-8479 TCGA-85-8666 TCGA-85-A4CL TCGA-85-A4QR TCGA-85-A50M TCGA-85-A53L 
        0.72        15.58         0.46         0.82         0.62         0.43 
TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 TCGA-90-7964 TCGA-90-A4ED TCGA-92-7341 
       24.89         9.50         2.93        14.07         8.02         3.48 
TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 TCGA-96-7544 
        4.01         5.26         2.27         2.86         0.16        39.88 
TCGA-96-8170 TCGA-96-A4JK TCGA-96-A4JL TCGA-98-7454 TCGA-98-8020 TCGA-98-8021 
        6.90         8.98         6.02         8.42         2.73        13.58 
TCGA-98-8022 TCGA-J1-A4AH TCGA-LA-A446 TCGA-MF-A522 TCGA-NC-A5HE TCGA-NC-A5HG 
        7.33         7.30         1.18         3.02        56.61        50.86 
TCGA-NC-A5HI 
       37.32 

  8P GAIN MUTATED 8P GAIN WILD-TYPE 
             0.03              0.03 
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
           141.34            173.79 
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
            15.91             12.59 
[1] "0.0 - 141.3 (15.9)" "0.0 - 173.8 (12.6)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
  "8P GAIN MUTATED"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56V        TCGA-46-3768        TCGA-46-6025 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-5898 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-56-7730        TCGA-56-7822        TCGA-56-8503        TCGA-56-8504 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-56-8622        TCGA-56-8624        TCGA-56-8625        TCGA-56-8626 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-56-A4BY        TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-58-8386        TCGA-58-8387        TCGA-58-8388        TCGA-58-8390 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-58-8391        TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-58-A46K        TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-60-2695        TCGA-60-2696        TCGA-60-2697        TCGA-60-2698 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-60-2703        TCGA-60-2704        TCGA-60-2706        TCGA-60-2707 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-60-2708        TCGA-60-2709        TCGA-60-2710        TCGA-60-2711 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-60-2712        TCGA-60-2713        TCGA-60-2714        TCGA-60-2715 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-60-2716        TCGA-60-2719        TCGA-60-2720        TCGA-60-2721 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-60-2722        TCGA-60-2723        TCGA-60-2724        TCGA-60-2725 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-60-2726        TCGA-66-2727        TCGA-66-2734        TCGA-66-2737 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2753        TCGA-66-2754 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-66-2755        TCGA-66-2756        TCGA-66-2757        TCGA-66-2758 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-66-2759        TCGA-66-2763        TCGA-66-2765        TCGA-66-2766 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-66-2767        TCGA-66-2768        TCGA-66-2769        TCGA-66-2770 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-66-2771        TCGA-66-2773        TCGA-66-2777        TCGA-66-2778 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-66-2780        TCGA-66-2781        TCGA-66-2782        TCGA-66-2783 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-66-2785        TCGA-66-2786        TCGA-66-2787        TCGA-66-2788 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-66-2789        TCGA-66-2790        TCGA-66-2791        TCGA-66-2792 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-66-2793        TCGA-66-2794        TCGA-66-2795        TCGA-66-2800 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-68-7755        TCGA-68-7756        TCGA-68-7757        TCGA-68-8250 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-68-8251        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8007 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-77-8008        TCGA-77-8009        TCGA-77-8128        TCGA-77-8130 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-77-8131        TCGA-77-8133        TCGA-77-8136        TCGA-77-8138 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-77-8139        TCGA-77-8140        TCGA-77-8143        TCGA-77-8144 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-77-8145        TCGA-77-8148        TCGA-77-8150        TCGA-77-8153 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ        TCGA-77-A5G3 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6560        TCGA-85-6561 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-7950 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-85-8048        TCGA-85-8049        TCGA-85-8052        TCGA-85-8070 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-85-8071        TCGA-85-8072        TCGA-85-8276        TCGA-85-8277 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-85-8287        TCGA-85-8288        TCGA-85-8350        TCGA-85-8351 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-85-8352        TCGA-85-8353        TCGA-85-8354        TCGA-85-8355 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-85-8479        TCGA-85-8481        TCGA-85-8580        TCGA-85-8582 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-85-8664        TCGA-85-8666        TCGA-85-A4CL        TCGA-85-A4QR 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-85-A50M        TCGA-85-A513        TCGA-85-A53L        TCGA-90-6837 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-90-A4ED        TCGA-90-A4EE        TCGA-92-7340        TCGA-92-7341 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-92-8063        TCGA-92-8064        TCGA-92-8065        TCGA-94-7033 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-94-7557        TCGA-94-7943        TCGA-96-7544        TCGA-96-7545 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-96-8169        TCGA-96-8170        TCGA-96-A4JK        TCGA-96-A4JL 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-NC-A5HI 
"8P GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
  "8P GAIN MUTATED"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56V        TCGA-46-3768        TCGA-46-6025 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-5898 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-56-7730        TCGA-56-7822        TCGA-56-8503        TCGA-56-8504 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-56-8622        TCGA-56-8624        TCGA-56-8625        TCGA-56-8626 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-56-A4BY        TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-58-8386        TCGA-58-8387        TCGA-58-8388        TCGA-58-8390 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-58-8391        TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-58-A46K        TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-60-2695        TCGA-60-2696        TCGA-60-2697        TCGA-60-2698 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-60-2703        TCGA-60-2704        TCGA-60-2706        TCGA-60-2707 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-60-2708        TCGA-60-2709        TCGA-60-2710        TCGA-60-2711 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-60-2712        TCGA-60-2713        TCGA-60-2714        TCGA-60-2715 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-60-2716        TCGA-60-2719        TCGA-60-2720        TCGA-60-2721 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-60-2722        TCGA-60-2723        TCGA-60-2724        TCGA-60-2725 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-60-2726        TCGA-66-2727        TCGA-66-2734        TCGA-66-2737 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2753        TCGA-66-2754 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-66-2755        TCGA-66-2756        TCGA-66-2757        TCGA-66-2758 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-66-2759        TCGA-66-2763        TCGA-66-2765        TCGA-66-2766 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-66-2767        TCGA-66-2768        TCGA-66-2769        TCGA-66-2770 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-66-2771        TCGA-66-2773        TCGA-66-2777        TCGA-66-2778 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-66-2780        TCGA-66-2781        TCGA-66-2782        TCGA-66-2783 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-66-2785        TCGA-66-2786        TCGA-66-2787        TCGA-66-2788 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-66-2789        TCGA-66-2790        TCGA-66-2791        TCGA-66-2792 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-66-2793        TCGA-66-2794        TCGA-66-2795        TCGA-66-2800 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-68-7755        TCGA-68-7756        TCGA-68-7757        TCGA-68-8250 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-68-8251        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8007 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-77-8008        TCGA-77-8009        TCGA-77-8128        TCGA-77-8130 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-77-8131        TCGA-77-8133        TCGA-77-8136        TCGA-77-8138 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-77-8139        TCGA-77-8140        TCGA-77-8143        TCGA-77-8144 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-77-8145        TCGA-77-8148        TCGA-77-8150        TCGA-77-8153 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ        TCGA-77-A5G3 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6560        TCGA-85-6561 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-7950 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-85-8048        TCGA-85-8049        TCGA-85-8052        TCGA-85-8070 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-85-8071        TCGA-85-8072        TCGA-85-8276        TCGA-85-8277 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-85-8287        TCGA-85-8288        TCGA-85-8350        TCGA-85-8351 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-85-8352        TCGA-85-8353        TCGA-85-8354        TCGA-85-8355 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-85-8479        TCGA-85-8481        TCGA-85-8580        TCGA-85-8582 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-85-8664        TCGA-85-8666        TCGA-85-A4CL        TCGA-85-A4QR 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-85-A50M        TCGA-85-A513        TCGA-85-A53L        TCGA-90-6837 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-90-A4ED        TCGA-90-A4EE        TCGA-92-7340        TCGA-92-7341 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-92-8063        TCGA-92-8064        TCGA-92-8065        TCGA-94-7033 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-94-7557        TCGA-94-7943        TCGA-96-7544        TCGA-96-7545 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-96-8169        TCGA-96-8170        TCGA-96-A4JK        TCGA-96-A4JL 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-NC-A5HI 
"8P GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
  "8P GAIN MUTATED"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56V        TCGA-46-3768        TCGA-46-6025 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-5898 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-56-7730        TCGA-56-7822        TCGA-56-8503        TCGA-56-8504 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-56-8622        TCGA-56-8624        TCGA-56-8625        TCGA-56-8626 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-56-A4BY        TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-58-8386        TCGA-58-8387        TCGA-58-8388        TCGA-58-8390 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-58-8391        TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-58-A46K        TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-60-2695        TCGA-60-2696        TCGA-60-2697        TCGA-60-2698 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-60-2703        TCGA-60-2704        TCGA-60-2706        TCGA-60-2707 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-60-2708        TCGA-60-2709        TCGA-60-2710        TCGA-60-2711 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-60-2712        TCGA-60-2713        TCGA-60-2714        TCGA-60-2715 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-60-2716        TCGA-60-2719        TCGA-60-2720        TCGA-60-2721 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-60-2722        TCGA-60-2723        TCGA-60-2724        TCGA-60-2725 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-60-2726        TCGA-66-2727        TCGA-66-2734        TCGA-66-2737 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2753        TCGA-66-2754 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-66-2755        TCGA-66-2756        TCGA-66-2757        TCGA-66-2758 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-66-2759        TCGA-66-2763        TCGA-66-2765        TCGA-66-2766 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-66-2767        TCGA-66-2768        TCGA-66-2769        TCGA-66-2770 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-66-2771        TCGA-66-2773        TCGA-66-2777        TCGA-66-2778 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-66-2780        TCGA-66-2781        TCGA-66-2782        TCGA-66-2783 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-66-2785        TCGA-66-2786        TCGA-66-2787        TCGA-66-2788 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-66-2789        TCGA-66-2790        TCGA-66-2791        TCGA-66-2792 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-66-2793        TCGA-66-2794        TCGA-66-2795        TCGA-66-2800 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-68-7755        TCGA-68-7756        TCGA-68-7757        TCGA-68-8250 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-68-8251        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8007 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-77-8008        TCGA-77-8009        TCGA-77-8128        TCGA-77-8130 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-77-8131        TCGA-77-8133        TCGA-77-8136        TCGA-77-8138 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-77-8139        TCGA-77-8140        TCGA-77-8143        TCGA-77-8144 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-77-8145        TCGA-77-8148        TCGA-77-8150        TCGA-77-8153 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ        TCGA-77-A5G3 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6560        TCGA-85-6561 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-7950 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-85-8048        TCGA-85-8049        TCGA-85-8052        TCGA-85-8070 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-85-8071        TCGA-85-8072        TCGA-85-8276        TCGA-85-8277 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-85-8287        TCGA-85-8288        TCGA-85-8350        TCGA-85-8351 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-85-8352        TCGA-85-8353        TCGA-85-8354        TCGA-85-8355 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-85-8479        TCGA-85-8481        TCGA-85-8580        TCGA-85-8582 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-85-8664        TCGA-85-8666        TCGA-85-A4CL        TCGA-85-A4QR 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-85-A50M        TCGA-85-A513        TCGA-85-A53L        TCGA-90-6837 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-90-A4ED        TCGA-90-A4EE        TCGA-92-7340        TCGA-92-7341 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-92-8063        TCGA-92-8064        TCGA-92-8065        TCGA-94-7033 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-94-7557        TCGA-94-7943        TCGA-96-7544        TCGA-96-7545 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-96-8169        TCGA-96-8170        TCGA-96-A4JK        TCGA-96-A4JL 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-NC-A5HI 
"8P GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D15V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  8P GAIN MUTATED         0       12       36        1         8        18
  8P GAIN WILD-TYPE       1       56       97        0        42        53
                   vv
clus                STAGE IIIA STAGE IIIB STAGE IV
  8P GAIN MUTATED           18          9        3
  8P GAIN WILD-TYPE         36         11        2
D15V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  8P GAIN MUTATED    19  67   9  11
  8P GAIN WILD-TYPE  74 183  35   8
D15V4, multiclass
    clus
vv   8P GAIN MUTATED 8P GAIN WILD-TYPE
  T1              19                74
  T2              67               183
  T3               9                35
  T4              11                 8
                   vv
clus                 N0  N1  N2  N3
  8P GAIN MUTATED    64  28  10   2
  8P GAIN WILD-TYPE 189  81  24   3
D15V5, multiclass
    clus
vv   8P GAIN MUTATED 8P GAIN WILD-TYPE
  N0              64               189
  N1              28                81
  N2              10                24
  N3               2                 3
                   vv
clus                 M0  M1  MX
  8P GAIN MUTATED    92   3  11
  8P GAIN WILD-TYPE 256   2  36
D15V6, multiclass
    clus
vv   8P GAIN MUTATED 8P GAIN WILD-TYPE
  M0              92               256
  M1               3                 2
  MX              11                36
D15V7, binary
                   cls
clus                  0   1
  8P GAIN MUTATED    30  76
  8P GAIN WILD-TYPE  71 229
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8P GAIN MUTATED     30   76
  8P GAIN WILD-TYPE   71  229
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  FEMALE              30                71
  MALE                76               229
D15V8, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  8P GAIN MUTATED                                       2
  8P GAIN WILD-TYPE                                    10
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  8P GAIN MUTATED                                        1
  8P GAIN WILD-TYPE                                      5
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  8P GAIN MUTATED                                         1
  8P GAIN WILD-TYPE                                       0
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  8P GAIN MUTATED                                                           102
  8P GAIN WILD-TYPE                                                         285
D15V9, multiclass
                                                             clus
vv                                                            8P GAIN MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     2
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                    1
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                   1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             102
                                                             clus
vv                                                            8P GAIN WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      10
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                      5
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                     0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               285
D15V10, binary
                   cls
clus                  0   1
  8P GAIN MUTATED     4 102
  8P GAIN WILD-TYPE   8 292
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8P GAIN MUTATED      4  102
  8P GAIN WILD-TYPE    8  292
     clus
vv    8P GAIN MUTATED 8P GAIN WILD-TYPE
  NO                4                 8
  YES             102               292
D15V11, continuous
D15V12, continuous
                   vv
clus                 R0  R1  R2  RX
  8P GAIN MUTATED    88   3   0   1
  8P GAIN WILD-TYPE 242   5   4  17
D15V13, multiclass
    clus
vv   8P GAIN MUTATED 8P GAIN WILD-TYPE
  R0              88               242
  R1               3                 5
  R2               0                 4
  RX               1                17

Clustering(16) Variable = 8Q GAIN MUTATION ANALYSIS
D16V1, survival
                   sevent
clus2                 0   1
  8Q GAIN MUTATED   117  76
  8Q GAIN WILD-TYPE 122  62
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
              193               184 
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
               76                62 
$`8Q GAIN MUTATED`
TCGA-18-3407 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 TCGA-18-3414 
        4.47        79.46         4.80        46.52        11.34        13.02 
TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 TCGA-18-5595 
       28.34        24.92         1.61        43.76         6.15        27.16 
TCGA-21-1070 TCGA-21-1075 TCGA-21-1079 TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 
      119.54        70.13        31.69         9.30       119.80         8.78 
TCGA-21-5783 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-21-A5DI TCGA-22-1011 
       88.08        41.69        33.93        10.82        32.19         1.74 
TCGA-22-1016 TCGA-22-1017 TCGA-22-4596 TCGA-22-4605 TCGA-22-4609 TCGA-22-4613 
       27.02        48.82         0.56        32.02         9.53        11.77 
TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 
       64.90        63.52        14.60        44.22         0.79        54.28 
TCGA-22-5481 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-A5C4 TCGA-33-4532 
       79.20        11.74        30.08        62.86         0.95         7.63 
TCGA-33-4533 TCGA-33-4583 TCGA-33-4587 TCGA-33-4589 TCGA-33-6737 TCGA-34-2605 
      114.05       141.34        54.44        10.98        19.76        28.96 
TCGA-34-2609 TCGA-34-5231 TCGA-34-5232 TCGA-34-5239 TCGA-34-5241 TCGA-34-5928 
       31.23        50.24        67.79        23.24        14.07        18.12 
TCGA-37-3789 TCGA-37-4132 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 TCGA-39-5022 
        0.43         7.46         3.39        74.07        44.71        55.17 
TCGA-39-5024 TCGA-39-5028 TCGA-39-5029 TCGA-39-5034 TCGA-39-5035 TCGA-39-5040 
       70.03         1.71        24.33        36.39        15.58        17.06 
TCGA-43-2576 TCGA-43-2578 TCGA-43-2581 TCGA-43-3920 TCGA-43-5668 TCGA-43-5670 
       40.21        22.49        38.66        33.07        11.47        18.05 
TCGA-43-6647 TCGA-43-6770 TCGA-43-7657 TCGA-43-8118 TCGA-43-A475 TCGA-43-A56V 
       24.89        10.19         1.58         2.93         9.73         5.06 
TCGA-46-3768 TCGA-52-7810 TCGA-52-7811 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 
        9.96        30.31         8.75        28.93         0.10         2.04 
TCGA-56-6546 TCGA-56-7822 TCGA-56-8504 TCGA-56-8622 TCGA-56-8628 TCGA-56-A49D 
        1.02         0.03         5.82         1.78         0.53         0.99 
TCGA-56-A4BX TCGA-56-A4ZK TCGA-56-A5DS TCGA-58-8386 TCGA-58-8387 TCGA-58-8392 
        1.51         0.13         0.26         0.03        13.25        16.47 
TCGA-58-8393 TCGA-58-A46J TCGA-58-A46M TCGA-60-2695 TCGA-60-2698 TCGA-60-2703 
       34.78        64.87        23.24        21.07        10.22        96.82 
TCGA-60-2704 TCGA-60-2707 TCGA-60-2708 TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 
       37.94        21.70        80.42         9.01        56.91        50.33 
TCGA-60-2719 TCGA-60-2720 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 
       42.61         3.16        29.85        35.90        23.57        26.79 
TCGA-60-2726 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 TCGA-66-2755 
       11.77        43.10        21.07         0.99         1.02         0.92 
TCGA-66-2756 TCGA-66-2757 TCGA-66-2763 TCGA-66-2767 TCGA-66-2769 TCGA-66-2770 
        0.99         0.99         0.99         2.01         7.07        23.01 
TCGA-66-2773 TCGA-66-2777 TCGA-66-2782 TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 
        3.02         2.01        12.00        22.98         4.04        22.98 
TCGA-66-2792 TCGA-66-2793 TCGA-66-2800 TCGA-68-7756 TCGA-68-8251 TCGA-77-6844 
       30.02        10.06        49.05         6.64         3.12        75.09 
TCGA-77-7139 TCGA-77-7141 TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 
       89.95         0.49        70.09       106.95         0.16        46.78 
TCGA-77-7465 TCGA-77-8007 TCGA-77-8009 TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 
       15.75         6.51        53.95        37.81        82.92        12.59 
TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 TCGA-77-8143 
       53.92        39.09        17.69       104.09        11.54        26.40 
TCGA-77-8148 TCGA-77-8150 TCGA-77-A5GH TCGA-85-6560 TCGA-85-6798 TCGA-85-7699 
        9.63        54.41        23.44         0.36         1.12         0.03 
TCGA-85-7950 TCGA-85-8052 TCGA-85-8070 TCGA-85-8287 TCGA-85-8350 TCGA-85-8353 
        1.97         0.53        16.77         1.45         1.97         1.78 
TCGA-85-8481 TCGA-85-8580 TCGA-85-8582 TCGA-85-8664 TCGA-85-8666 TCGA-85-A4QR 
        0.66        14.60        13.91         0.10        15.58         0.82 
TCGA-85-A513 TCGA-90-7767 TCGA-90-7769 TCGA-90-A4EE TCGA-92-7340 TCGA-92-7341 
        0.79         2.93        11.77        10.88         2.70         3.48 
TCGA-94-7557 TCGA-94-7943 TCGA-96-7545 TCGA-96-8169 TCGA-96-8170 TCGA-96-A4JK 
        0.16        11.70        44.15         6.18         6.90         8.98 
TCGA-98-8020 TCGA-98-8022 TCGA-98-8023 TCGA-J1-A4AH TCGA-L3-A4E7 TCGA-L3-A524 
        2.73         7.33        10.13         7.30         1.15        14.76 
TCGA-NC-A5HG 
       50.86 

$`8Q GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3408 TCGA-18-3415 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 
       12.16        81.07        59.51         2.79        90.51         3.02 
TCGA-21-1071 TCGA-21-1072 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1080 
       46.88        99.16        60.89        34.78        15.55       122.43 
TCGA-21-5782 TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 
       31.63        19.99         7.33        14.93         4.31        64.21 
TCGA-22-1012 TCGA-22-4591 TCGA-22-4593 TCGA-22-4594 TCGA-22-4595 TCGA-22-4599 
       14.10        20.45        35.08        48.33        24.13        38.17 
TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-5471 TCGA-22-5480 TCGA-22-5483 
       34.75        13.12        19.30        31.73        71.34        18.84 
TCGA-22-5491 TCGA-22-5492 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 
       56.32        16.60        97.94        43.10       173.79       103.53 
TCGA-33-4586 TCGA-33-6738 TCGA-34-2596 TCGA-34-2600 TCGA-34-2604 TCGA-34-2608 
       14.07        26.99         2.63        61.61        31.50        32.84 
TCGA-34-5234 TCGA-34-5236 TCGA-34-5240 TCGA-34-5927 TCGA-34-5929 TCGA-34-7107 
       56.38         9.04        12.00        30.94         4.96         1.08 
TCGA-37-3783 TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 TCGA-37-4133 TCGA-37-4135 
        3.95         0.39         6.54         8.09         7.82         6.81 
TCGA-37-4141 TCGA-39-5011 TCGA-39-5021 TCGA-39-5027 TCGA-39-5030 TCGA-39-5031 
        0.39        47.80        68.58        60.76         1.94        27.35 
TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-3394 TCGA-43-6143 TCGA-43-6771 
       35.64        35.70        17.88        27.02        12.36         5.42 
TCGA-43-6773 TCGA-43-7656 TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 TCGA-43-A474 
        3.78         6.97        66.51         6.64         6.35        11.61 
TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 
       10.65        13.87         0.39         0.39        29.95        17.79 
TCGA-52-7809 TCGA-52-7812 TCGA-56-5898 TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 
        5.42        27.45        18.25         0.99         0.43         0.99 
TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 TCGA-56-7730 TCGA-56-8503 TCGA-56-8624 
        1.45         1.32         0.85         0.20         1.35         1.18 
TCGA-56-8625 TCGA-56-8626 TCGA-56-8629 TCGA-56-A4BY TCGA-56-A4ZJ TCGA-58-8388 
        2.07         0.56         1.12         0.99         1.02        12.43 
TCGA-58-8390 TCGA-58-8391 TCGA-58-A46K TCGA-58-A46L TCGA-58-A46N TCGA-60-2696 
       29.95        71.24        34.36        36.59        17.72         3.58 
TCGA-60-2697 TCGA-60-2706 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2715 
       12.23        92.71        49.48        66.51        41.39        35.34 
TCGA-60-2716 TCGA-60-2721 TCGA-66-2727 TCGA-66-2737 TCGA-66-2754 TCGA-66-2758 
       48.49        32.28        16.96         2.01         2.01        20.98 
TCGA-66-2759 TCGA-66-2765 TCGA-66-2766 TCGA-66-2768 TCGA-66-2771 TCGA-66-2778 
       25.02         2.01         1.02         2.01        19.00        19.00 
TCGA-66-2780 TCGA-66-2781 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 
       12.03         3.98        24.95         1.94        25.97        40.01 
TCGA-66-2791 TCGA-66-2794 TCGA-66-2795 TCGA-68-7755 TCGA-68-7757 TCGA-68-8250 
        5.03        54.08         4.01         2.73         6.94         8.02 
TCGA-77-6842 TCGA-77-6843 TCGA-77-6845 TCGA-77-7138 TCGA-77-7140 TCGA-77-7142 
       29.56        73.08        23.28        11.18        20.78        42.25 
TCGA-77-8008 TCGA-77-8144 TCGA-77-8145 TCGA-77-8153 TCGA-77-8154 TCGA-77-8156 
       86.76        27.39         6.97        55.33        35.90         0.33 
TCGA-77-A5FZ TCGA-77-A5G3 TCGA-77-A5GB TCGA-85-6561 TCGA-85-7696 TCGA-85-7697 
      126.18       117.57        30.81         0.79         0.59         0.33 
TCGA-85-7698 TCGA-85-7843 TCGA-85-7844 TCGA-85-8048 TCGA-85-8049 TCGA-85-8071 
        1.61         1.15         1.25         0.85         1.97        14.07 
TCGA-85-8072 TCGA-85-8276 TCGA-85-8277 TCGA-85-8288 TCGA-85-8351 TCGA-85-8352 
        1.18         0.43         0.36         1.78         1.81         2.20 
TCGA-85-8354 TCGA-85-8355 TCGA-85-8479 TCGA-85-A4CL TCGA-85-A50M TCGA-85-A53L 
        2.01         0.66         0.72         0.46         0.62         0.43 
TCGA-90-6837 TCGA-90-7766 TCGA-90-7964 TCGA-90-A4ED TCGA-92-8063 TCGA-92-8064 
       24.89         9.50        14.07         8.02         4.01         5.26 
TCGA-92-8065 TCGA-94-7033 TCGA-96-7544 TCGA-96-A4JL TCGA-98-7454 TCGA-98-8021 
        2.27         2.86        39.88         6.02         8.42        13.58 
TCGA-LA-A446 TCGA-MF-A522 TCGA-NC-A5HE TCGA-NC-A5HI 
        1.18         3.02        56.61        37.32 

  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
             0.03              0.20 
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
           141.34            173.79 
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
           14.070            12.775 
[1] "0.0 - 141.3 (14.1)" "0.2 - 173.8 (12.8)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56V        TCGA-46-3768        TCGA-46-6025 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-5898 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-56-7730        TCGA-56-7822        TCGA-56-8503        TCGA-56-8504 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-56-8622        TCGA-56-8624        TCGA-56-8625        TCGA-56-8626 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-56-A4BY        TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-58-8386        TCGA-58-8387        TCGA-58-8388        TCGA-58-8390 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-58-8391        TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-58-A46K        TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-60-2695        TCGA-60-2696        TCGA-60-2697        TCGA-60-2698 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-60-2703        TCGA-60-2704        TCGA-60-2706        TCGA-60-2707 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-60-2708        TCGA-60-2709        TCGA-60-2710        TCGA-60-2711 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-60-2712        TCGA-60-2713        TCGA-60-2714        TCGA-60-2715 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-60-2716        TCGA-60-2719        TCGA-60-2720        TCGA-60-2721 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-60-2722        TCGA-60-2723        TCGA-60-2724        TCGA-60-2725 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-60-2726        TCGA-66-2727        TCGA-66-2734        TCGA-66-2737 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2753        TCGA-66-2754 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-66-2755        TCGA-66-2756        TCGA-66-2757        TCGA-66-2758 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-66-2759        TCGA-66-2763        TCGA-66-2765        TCGA-66-2766 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-66-2767        TCGA-66-2768        TCGA-66-2769        TCGA-66-2770 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-66-2771        TCGA-66-2773        TCGA-66-2777        TCGA-66-2778 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-66-2780        TCGA-66-2781        TCGA-66-2782        TCGA-66-2783 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-66-2785        TCGA-66-2786        TCGA-66-2787        TCGA-66-2788 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-66-2789        TCGA-66-2790        TCGA-66-2791        TCGA-66-2792 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-66-2793        TCGA-66-2794        TCGA-66-2795        TCGA-66-2800 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-68-7755        TCGA-68-7756        TCGA-68-7757        TCGA-68-8250 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-68-8251        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8007 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-77-8008        TCGA-77-8009        TCGA-77-8128        TCGA-77-8130 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-77-8131        TCGA-77-8133        TCGA-77-8136        TCGA-77-8138 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-77-8139        TCGA-77-8140        TCGA-77-8143        TCGA-77-8144 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-77-8145        TCGA-77-8148        TCGA-77-8150        TCGA-77-8153 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ        TCGA-77-A5G3 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6560        TCGA-85-6561 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-7950 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-85-8048        TCGA-85-8049        TCGA-85-8052        TCGA-85-8070 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-85-8071        TCGA-85-8072        TCGA-85-8276        TCGA-85-8277 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-85-8287        TCGA-85-8288        TCGA-85-8350        TCGA-85-8351 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-85-8352        TCGA-85-8353        TCGA-85-8354        TCGA-85-8355 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-85-8479        TCGA-85-8481        TCGA-85-8580        TCGA-85-8582 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-85-8664        TCGA-85-8666        TCGA-85-A4CL        TCGA-85-A4QR 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-85-A50M        TCGA-85-A513        TCGA-85-A53L        TCGA-90-6837 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-90-A4ED        TCGA-90-A4EE        TCGA-92-7340        TCGA-92-7341 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-92-8063        TCGA-92-8064        TCGA-92-8065        TCGA-94-7033 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-94-7557        TCGA-94-7943        TCGA-96-7544        TCGA-96-7545 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-96-8169        TCGA-96-8170        TCGA-96-A4JK        TCGA-96-A4JL 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-NC-A5HI 
"8Q GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56V        TCGA-46-3768        TCGA-46-6025 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-5898 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-56-7730        TCGA-56-7822        TCGA-56-8503        TCGA-56-8504 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-56-8622        TCGA-56-8624        TCGA-56-8625        TCGA-56-8626 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-56-A4BY        TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-58-8386        TCGA-58-8387        TCGA-58-8388        TCGA-58-8390 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-58-8391        TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-58-A46K        TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-60-2695        TCGA-60-2696        TCGA-60-2697        TCGA-60-2698 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-60-2703        TCGA-60-2704        TCGA-60-2706        TCGA-60-2707 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-60-2708        TCGA-60-2709        TCGA-60-2710        TCGA-60-2711 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-60-2712        TCGA-60-2713        TCGA-60-2714        TCGA-60-2715 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-60-2716        TCGA-60-2719        TCGA-60-2720        TCGA-60-2721 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-60-2722        TCGA-60-2723        TCGA-60-2724        TCGA-60-2725 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-60-2726        TCGA-66-2727        TCGA-66-2734        TCGA-66-2737 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2753        TCGA-66-2754 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-66-2755        TCGA-66-2756        TCGA-66-2757        TCGA-66-2758 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-66-2759        TCGA-66-2763        TCGA-66-2765        TCGA-66-2766 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-66-2767        TCGA-66-2768        TCGA-66-2769        TCGA-66-2770 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-66-2771        TCGA-66-2773        TCGA-66-2777        TCGA-66-2778 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-66-2780        TCGA-66-2781        TCGA-66-2782        TCGA-66-2783 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-66-2785        TCGA-66-2786        TCGA-66-2787        TCGA-66-2788 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-66-2789        TCGA-66-2790        TCGA-66-2791        TCGA-66-2792 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-66-2793        TCGA-66-2794        TCGA-66-2795        TCGA-66-2800 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-68-7755        TCGA-68-7756        TCGA-68-7757        TCGA-68-8250 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-68-8251        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8007 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-77-8008        TCGA-77-8009        TCGA-77-8128        TCGA-77-8130 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-77-8131        TCGA-77-8133        TCGA-77-8136        TCGA-77-8138 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-77-8139        TCGA-77-8140        TCGA-77-8143        TCGA-77-8144 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-77-8145        TCGA-77-8148        TCGA-77-8150        TCGA-77-8153 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ        TCGA-77-A5G3 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6560        TCGA-85-6561 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-7950 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-85-8048        TCGA-85-8049        TCGA-85-8052        TCGA-85-8070 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-85-8071        TCGA-85-8072        TCGA-85-8276        TCGA-85-8277 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-85-8287        TCGA-85-8288        TCGA-85-8350        TCGA-85-8351 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-85-8352        TCGA-85-8353        TCGA-85-8354        TCGA-85-8355 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-85-8479        TCGA-85-8481        TCGA-85-8580        TCGA-85-8582 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-85-8664        TCGA-85-8666        TCGA-85-A4CL        TCGA-85-A4QR 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-85-A50M        TCGA-85-A513        TCGA-85-A53L        TCGA-90-6837 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-90-A4ED        TCGA-90-A4EE        TCGA-92-7340        TCGA-92-7341 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-92-8063        TCGA-92-8064        TCGA-92-8065        TCGA-94-7033 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-94-7557        TCGA-94-7943        TCGA-96-7544        TCGA-96-7545 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-96-8169        TCGA-96-8170        TCGA-96-A4JK        TCGA-96-A4JL 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-NC-A5HI 
"8Q GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56V        TCGA-46-3768        TCGA-46-6025 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-5898 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-56-7730        TCGA-56-7822        TCGA-56-8503        TCGA-56-8504 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-56-8622        TCGA-56-8624        TCGA-56-8625        TCGA-56-8626 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-56-A4BY        TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-58-8386        TCGA-58-8387        TCGA-58-8388        TCGA-58-8390 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-58-8391        TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-58-A46K        TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-60-2695        TCGA-60-2696        TCGA-60-2697        TCGA-60-2698 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-60-2703        TCGA-60-2704        TCGA-60-2706        TCGA-60-2707 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-60-2708        TCGA-60-2709        TCGA-60-2710        TCGA-60-2711 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-60-2712        TCGA-60-2713        TCGA-60-2714        TCGA-60-2715 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-60-2716        TCGA-60-2719        TCGA-60-2720        TCGA-60-2721 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-60-2722        TCGA-60-2723        TCGA-60-2724        TCGA-60-2725 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-60-2726        TCGA-66-2727        TCGA-66-2734        TCGA-66-2737 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2753        TCGA-66-2754 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-66-2755        TCGA-66-2756        TCGA-66-2757        TCGA-66-2758 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-66-2759        TCGA-66-2763        TCGA-66-2765        TCGA-66-2766 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-66-2767        TCGA-66-2768        TCGA-66-2769        TCGA-66-2770 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-66-2771        TCGA-66-2773        TCGA-66-2777        TCGA-66-2778 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-66-2780        TCGA-66-2781        TCGA-66-2782        TCGA-66-2783 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-66-2785        TCGA-66-2786        TCGA-66-2787        TCGA-66-2788 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-66-2789        TCGA-66-2790        TCGA-66-2791        TCGA-66-2792 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-66-2793        TCGA-66-2794        TCGA-66-2795        TCGA-66-2800 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-68-7755        TCGA-68-7756        TCGA-68-7757        TCGA-68-8250 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-68-8251        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8007 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-77-8008        TCGA-77-8009        TCGA-77-8128        TCGA-77-8130 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-77-8131        TCGA-77-8133        TCGA-77-8136        TCGA-77-8138 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-77-8139        TCGA-77-8140        TCGA-77-8143        TCGA-77-8144 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-77-8145        TCGA-77-8148        TCGA-77-8150        TCGA-77-8153 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ        TCGA-77-A5G3 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6560        TCGA-85-6561 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-7950 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-85-8048        TCGA-85-8049        TCGA-85-8052        TCGA-85-8070 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-85-8071        TCGA-85-8072        TCGA-85-8276        TCGA-85-8277 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-85-8287        TCGA-85-8288        TCGA-85-8350        TCGA-85-8351 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-85-8352        TCGA-85-8353        TCGA-85-8354        TCGA-85-8355 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-85-8479        TCGA-85-8481        TCGA-85-8580        TCGA-85-8582 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-85-8664        TCGA-85-8666        TCGA-85-A4CL        TCGA-85-A4QR 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-85-A50M        TCGA-85-A513        TCGA-85-A53L        TCGA-90-6837 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-90-A4ED        TCGA-90-A4EE        TCGA-92-7340        TCGA-92-7341 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-92-8063        TCGA-92-8064        TCGA-92-8065        TCGA-94-7033 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-94-7557        TCGA-94-7943        TCGA-96-7544        TCGA-96-7545 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-96-8169        TCGA-96-8170        TCGA-96-A4JK        TCGA-96-A4JL 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-NC-A5HI 
"8Q GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D16V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  8Q GAIN MUTATED         1       26       69        0        20        44
  8Q GAIN WILD-TYPE       0       42       64        1        30        27
                   vv
clus                STAGE IIIA STAGE IIIB STAGE IV
  8Q GAIN MUTATED           31         10        5
  8Q GAIN WILD-TYPE         23         10        0
D16V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  8Q GAIN MUTATED    37 134  25  11
  8Q GAIN WILD-TYPE  56 116  19   8
D16V4, multiclass
    clus
vv   8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  T1              37                56
  T2             134               116
  T3              25                19
  T4              11                 8
                   vv
clus                 N0  N1  N2  N3
  8Q GAIN MUTATED   121  65  15   2
  8Q GAIN WILD-TYPE 132  44  19   3
D16V5, multiclass
    clus
vv   8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  N0             121               132
  N1              65                44
  N2              15                19
  N3               2                 3
                   vv
clus                 M0  M1  MX
  8Q GAIN MUTATED   179   5  22
  8Q GAIN WILD-TYPE 169   0  25
D16V6, multiclass
    clus
vv   8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  M0             179               169
  M1               5                 0
  MX              22                25
D16V7, binary
                   cls
clus                  0   1
  8Q GAIN MUTATED    54 153
  8Q GAIN WILD-TYPE  47 152
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8Q GAIN MUTATED     54  153
  8Q GAIN WILD-TYPE   47  152
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  FEMALE              54                47
  MALE               153               152
D16V8, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  8Q GAIN MUTATED                                       4
  8Q GAIN WILD-TYPE                                     8
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  8Q GAIN MUTATED                                        2
  8Q GAIN WILD-TYPE                                      4
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  8Q GAIN MUTATED                                         1
  8Q GAIN WILD-TYPE                                       0
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  8Q GAIN MUTATED                                                           200
  8Q GAIN WILD-TYPE                                                         187
D16V9, multiclass
                                                             clus
vv                                                            8Q GAIN MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     4
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                    2
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                   1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             200
                                                             clus
vv                                                            8Q GAIN WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       8
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                      4
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                     0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               187
D16V10, binary
                   cls
clus                  0   1
  8Q GAIN MUTATED     8 199
  8Q GAIN WILD-TYPE   4 195
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8Q GAIN MUTATED      8  199
  8Q GAIN WILD-TYPE    4  195
     clus
vv    8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  NO                8                 4
  YES             199               195
D16V11, continuous
D16V12, continuous
                   vv
clus                 R0  R1  R2  RX
  8Q GAIN MUTATED   173   5   0   6
  8Q GAIN WILD-TYPE 157   3   4  12
D16V13, multiclass
    clus
vv   8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  R0             173               157
  R1               5                 3
  R2               0                 4
  RX               6                12

Clustering(17) Variable = 9P GAIN MUTATION ANALYSIS
D17V1, survival
                   sevent
clus2                 0   1
  9P GAIN MUTATED    27  18
  9P GAIN WILD-TYPE 212 120
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
               45               332 
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
               18               120 
$`9P GAIN MUTATED`
TCGA-18-3407 TCGA-18-3410 TCGA-18-3416 TCGA-22-4604 TCGA-22-5481 TCGA-33-4532 
        4.47         4.80        28.34        13.12        79.20         7.63 
TCGA-33-4533 TCGA-33-4566 TCGA-33-4583 TCGA-33-4586 TCGA-33-4589 TCGA-34-5239 
      114.05       173.79       141.34        14.07        10.98        23.24 
TCGA-34-5240 TCGA-34-7107 TCGA-37-3792 TCGA-37-4133 TCGA-39-5030 TCGA-39-5036 
       12.00         1.08         0.39         7.82         1.94        35.64 
TCGA-43-6143 TCGA-43-7658 TCGA-43-A475 TCGA-46-6025 TCGA-51-4079 TCGA-52-7622 
       12.36        66.51         9.73        10.65         0.39        17.79 
TCGA-58-8386 TCGA-60-2695 TCGA-60-2704 TCGA-60-2712 TCGA-60-2714 TCGA-60-2722 
        0.03        21.07        37.94         9.01        50.33        29.85 
TCGA-66-2756 TCGA-68-7755 TCGA-68-8250 TCGA-77-8007 TCGA-77-8133 TCGA-77-8136 
        0.99         2.73         8.02         6.51        53.92        39.09 
TCGA-77-8150 TCGA-77-A5G3 TCGA-85-6561 TCGA-85-7698 TCGA-85-8070 TCGA-85-8072 
       54.41       117.57         0.79         1.61        16.77         1.18 
TCGA-85-8277 TCGA-85-8353 TCGA-92-8064 
        0.36         1.78         5.26 

$`9P GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3408 TCGA-18-3409 TCGA-18-3411 TCGA-18-3412 TCGA-18-3414 
       12.16        81.07        79.46        46.52        11.34        13.02 
TCGA-18-3415 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 
       59.51        24.92         1.61        43.76         6.15         2.79 
TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 TCGA-21-1072 
       90.51         3.02        27.16       119.54        46.88        99.16 
TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1079 TCGA-21-1080 
       70.13        60.89        34.78        15.55        31.69       122.43 
TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 
        9.30       119.80         8.78        31.63        88.08        41.69 
TCGA-21-5786 TCGA-21-5787 TCGA-21-A5DI TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 
       33.93        10.82        32.19        19.99         7.33        14.93 
TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 
        4.31        64.21         1.74        14.10        27.02        48.82 
TCGA-22-4591 TCGA-22-4593 TCGA-22-4594 TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 
       20.45        35.08        48.33        24.13         0.56        38.17 
TCGA-22-4601 TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 
       34.75        32.02        19.30         9.53        11.77        31.73 
TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 
       64.90        63.52        14.60        44.22         0.79        54.28 
TCGA-22-5480 TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 
       71.34        11.74        18.84        30.08        62.86        56.32 
TCGA-22-5492 TCGA-22-A5C4 TCGA-33-4538 TCGA-33-4547 TCGA-33-4582 TCGA-33-4587 
       16.60         0.95        97.94        43.10       103.53        54.44 
TCGA-33-6737 TCGA-33-6738 TCGA-34-2596 TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 
       19.76        26.99         2.63        61.61        31.50        28.96 
TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 
       32.84        31.23        50.24        67.79        56.38         9.04 
TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 
       14.07        30.94        18.12         4.96         3.95         0.43 
TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 
        6.54         8.09         7.46         6.81         0.39         3.39 
TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 
       47.80        74.07        44.71        68.58        55.17        70.03 
TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5031 TCGA-39-5034 TCGA-39-5035 
       60.76         1.71        24.33        27.35        36.39        15.58 
TCGA-39-5037 TCGA-39-5039 TCGA-39-5040 TCGA-43-2576 TCGA-43-2578 TCGA-43-2581 
       35.70        17.88        17.06        40.21        22.49        38.66 
TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-5670 TCGA-43-6647 TCGA-43-6770 
       27.02        33.07        11.47        18.05        24.89        10.19 
TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 TCGA-43-8115 TCGA-43-8116 
        5.42         3.78         6.97         1.58         6.64         6.35 
TCGA-43-8118 TCGA-43-A474 TCGA-43-A56V TCGA-46-3768 TCGA-46-6026 TCGA-51-4080 
        2.93        11.61         5.06         9.96        13.87         0.39 
TCGA-51-4081 TCGA-52-7809 TCGA-52-7810 TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 
       29.95         5.42        30.31         8.75        27.45        28.93 
TCGA-56-5897 TCGA-56-5898 TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 
        0.10        18.25         2.04         1.02         0.99         0.43 
TCGA-56-7223 TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 TCGA-56-7730 TCGA-56-7822 
        0.99         1.45         1.32         0.85         0.20         0.03 
TCGA-56-8503 TCGA-56-8504 TCGA-56-8622 TCGA-56-8624 TCGA-56-8625 TCGA-56-8626 
        1.35         5.82         1.78         1.18         2.07         0.56 
TCGA-56-8628 TCGA-56-8629 TCGA-56-A49D TCGA-56-A4BX TCGA-56-A4BY TCGA-56-A4ZJ 
        0.53         1.12         0.99         1.51         0.99         1.02 
TCGA-56-A4ZK TCGA-56-A5DS TCGA-58-8387 TCGA-58-8388 TCGA-58-8390 TCGA-58-8391 
        0.13         0.26        13.25        12.43        29.95        71.24 
TCGA-58-8392 TCGA-58-8393 TCGA-58-A46J TCGA-58-A46K TCGA-58-A46L TCGA-58-A46M 
       16.47        34.78        64.87        34.36        36.59        23.24 
TCGA-58-A46N TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 TCGA-60-2706 
       17.72         3.58        12.23        10.22        96.82        92.71 
TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2713 
       21.70        80.42        49.48        66.51        41.39        56.91 
TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2723 
       35.34        48.49        42.61         3.16        32.28        35.90 
TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 
       23.57        26.79        11.77        16.96        43.10         2.01 
TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 TCGA-66-2757 
       21.07         0.99         1.02         2.01         0.92         0.99 
TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 
       20.98        25.02         0.99         2.01         1.02         2.01 
TCGA-66-2768 TCGA-66-2769 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 
        2.01         7.07        23.01        19.00         3.02         2.01 
TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 
       19.00        12.03         3.98        12.00        24.95         1.94 
TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 
       25.97        40.01        22.98         4.04        22.98         5.03 
TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-68-7756 
       30.02        10.06        54.08         4.01        49.05         6.64 
TCGA-68-7757 TCGA-68-8251 TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 
        6.94         3.12        29.56        73.08        75.09        23.28 
TCGA-77-7138 TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 
       11.18        89.95        20.78         0.49        42.25        70.09 
TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 TCGA-77-8008 TCGA-77-8009 
      106.95         0.16        46.78        15.75        86.76        53.95 
TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 
       37.81        82.92        12.59        17.69       104.09        11.54 
TCGA-77-8143 TCGA-77-8144 TCGA-77-8145 TCGA-77-8148 TCGA-77-8153 TCGA-77-8154 
       26.40        27.39         6.97         9.63        55.33        35.90 
TCGA-77-8156 TCGA-77-A5FZ TCGA-77-A5GB TCGA-77-A5GH TCGA-85-6560 TCGA-85-6798 
        0.33       126.18        30.81        23.44         0.36         1.12 
TCGA-85-7696 TCGA-85-7697 TCGA-85-7699 TCGA-85-7843 TCGA-85-7844 TCGA-85-7950 
        0.59         0.33         0.03         1.15         1.25         1.97 
TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 TCGA-85-8071 TCGA-85-8276 TCGA-85-8287 
        0.85         1.97         0.53        14.07         0.43         1.45 
TCGA-85-8288 TCGA-85-8350 TCGA-85-8351 TCGA-85-8352 TCGA-85-8354 TCGA-85-8355 
        1.78         1.97         1.81         2.20         2.01         0.66 
TCGA-85-8479 TCGA-85-8481 TCGA-85-8580 TCGA-85-8582 TCGA-85-8664 TCGA-85-8666 
        0.72         0.66        14.60        13.91         0.10        15.58 
TCGA-85-A4CL TCGA-85-A4QR TCGA-85-A50M TCGA-85-A513 TCGA-85-A53L TCGA-90-6837 
        0.46         0.82         0.62         0.79         0.43        24.89 
TCGA-90-7766 TCGA-90-7767 TCGA-90-7769 TCGA-90-7964 TCGA-90-A4ED TCGA-90-A4EE 
        9.50         2.93        11.77        14.07         8.02        10.88 
TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 
        2.70         3.48         4.01         2.27         2.86         0.16 
TCGA-94-7943 TCGA-96-7544 TCGA-96-7545 TCGA-96-8169 TCGA-96-8170 TCGA-96-A4JK 
       11.70        39.88        44.15         6.18         6.90         8.98 
TCGA-96-A4JL TCGA-98-7454 TCGA-98-8020 TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 
        6.02         8.42         2.73        13.58         7.33        10.13 
TCGA-J1-A4AH TCGA-L3-A4E7 TCGA-L3-A524 TCGA-LA-A446 TCGA-MF-A522 TCGA-NC-A5HE 
        7.30         1.15        14.76         1.18         3.02        56.61 
TCGA-NC-A5HG TCGA-NC-A5HI 
       50.86        37.32 

  9P GAIN MUTATED 9P GAIN WILD-TYPE 
             0.03              0.03 
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
           173.79            126.18 
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
            10.98             14.07 
[1] "0.0 - 173.8 (11.0)" "0.0 - 126.2 (14.1)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56V        TCGA-46-3768        TCGA-46-6025 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-5898 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-56-7730        TCGA-56-7822        TCGA-56-8503        TCGA-56-8504 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-56-8622        TCGA-56-8624        TCGA-56-8625        TCGA-56-8626 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-56-A4BY        TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-58-8386        TCGA-58-8387        TCGA-58-8388        TCGA-58-8390 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-58-8391        TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-58-A46K        TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-60-2695        TCGA-60-2696        TCGA-60-2697        TCGA-60-2698 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-60-2703        TCGA-60-2704        TCGA-60-2706        TCGA-60-2707 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-60-2708        TCGA-60-2709        TCGA-60-2710        TCGA-60-2711 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-60-2712        TCGA-60-2713        TCGA-60-2714        TCGA-60-2715 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-60-2716        TCGA-60-2719        TCGA-60-2720        TCGA-60-2721 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-60-2722        TCGA-60-2723        TCGA-60-2724        TCGA-60-2725 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-60-2726        TCGA-66-2727        TCGA-66-2734        TCGA-66-2737 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2753        TCGA-66-2754 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2755        TCGA-66-2756        TCGA-66-2757        TCGA-66-2758 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2759        TCGA-66-2763        TCGA-66-2765        TCGA-66-2766 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2767        TCGA-66-2768        TCGA-66-2769        TCGA-66-2770 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2771        TCGA-66-2773        TCGA-66-2777        TCGA-66-2778 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2780        TCGA-66-2781        TCGA-66-2782        TCGA-66-2783 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2785        TCGA-66-2786        TCGA-66-2787        TCGA-66-2788 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2789        TCGA-66-2790        TCGA-66-2791        TCGA-66-2792 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2793        TCGA-66-2794        TCGA-66-2795        TCGA-66-2800 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-68-7755        TCGA-68-7756        TCGA-68-7757        TCGA-68-8250 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-68-8251        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8007 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-77-8008        TCGA-77-8009        TCGA-77-8128        TCGA-77-8130 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-77-8131        TCGA-77-8133        TCGA-77-8136        TCGA-77-8138 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8140        TCGA-77-8143        TCGA-77-8144 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-77-8145        TCGA-77-8148        TCGA-77-8150        TCGA-77-8153 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ        TCGA-77-A5G3 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6560        TCGA-85-6561 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-7950 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-85-8048        TCGA-85-8049        TCGA-85-8052        TCGA-85-8070 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-85-8071        TCGA-85-8072        TCGA-85-8276        TCGA-85-8277 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-85-8287        TCGA-85-8288        TCGA-85-8350        TCGA-85-8351 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-85-8352        TCGA-85-8353        TCGA-85-8354        TCGA-85-8355 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-85-8479        TCGA-85-8481        TCGA-85-8580        TCGA-85-8582 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-85-8664        TCGA-85-8666        TCGA-85-A4CL        TCGA-85-A4QR 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-85-A50M        TCGA-85-A513        TCGA-85-A53L        TCGA-90-6837 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-90-A4ED        TCGA-90-A4EE        TCGA-92-7340        TCGA-92-7341 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-92-8063        TCGA-92-8064        TCGA-92-8065        TCGA-94-7033 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-94-7557        TCGA-94-7943        TCGA-96-7544        TCGA-96-7545 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-96-8169        TCGA-96-8170        TCGA-96-A4JK        TCGA-96-A4JL 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-NC-A5HI 
"9P GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56V        TCGA-46-3768        TCGA-46-6025 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-5898 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-56-7730        TCGA-56-7822        TCGA-56-8503        TCGA-56-8504 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-56-8622        TCGA-56-8624        TCGA-56-8625        TCGA-56-8626 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-56-A4BY        TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-58-8386        TCGA-58-8387        TCGA-58-8388        TCGA-58-8390 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-58-8391        TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-58-A46K        TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-60-2695        TCGA-60-2696        TCGA-60-2697        TCGA-60-2698 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-60-2703        TCGA-60-2704        TCGA-60-2706        TCGA-60-2707 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-60-2708        TCGA-60-2709        TCGA-60-2710        TCGA-60-2711 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-60-2712        TCGA-60-2713        TCGA-60-2714        TCGA-60-2715 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-60-2716        TCGA-60-2719        TCGA-60-2720        TCGA-60-2721 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-60-2722        TCGA-60-2723        TCGA-60-2724        TCGA-60-2725 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-60-2726        TCGA-66-2727        TCGA-66-2734        TCGA-66-2737 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2753        TCGA-66-2754 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2755        TCGA-66-2756        TCGA-66-2757        TCGA-66-2758 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2759        TCGA-66-2763        TCGA-66-2765        TCGA-66-2766 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2767        TCGA-66-2768        TCGA-66-2769        TCGA-66-2770 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2771        TCGA-66-2773        TCGA-66-2777        TCGA-66-2778 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2780        TCGA-66-2781        TCGA-66-2782        TCGA-66-2783 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2785        TCGA-66-2786        TCGA-66-2787        TCGA-66-2788 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2789        TCGA-66-2790        TCGA-66-2791        TCGA-66-2792 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2793        TCGA-66-2794        TCGA-66-2795        TCGA-66-2800 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-68-7755        TCGA-68-7756        TCGA-68-7757        TCGA-68-8250 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-68-8251        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8007 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-77-8008        TCGA-77-8009        TCGA-77-8128        TCGA-77-8130 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-77-8131        TCGA-77-8133        TCGA-77-8136        TCGA-77-8138 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8140        TCGA-77-8143        TCGA-77-8144 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-77-8145        TCGA-77-8148        TCGA-77-8150        TCGA-77-8153 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ        TCGA-77-A5G3 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6560        TCGA-85-6561 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-7950 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-85-8048        TCGA-85-8049        TCGA-85-8052        TCGA-85-8070 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-85-8071        TCGA-85-8072        TCGA-85-8276        TCGA-85-8277 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-85-8287        TCGA-85-8288        TCGA-85-8350        TCGA-85-8351 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-85-8352        TCGA-85-8353        TCGA-85-8354        TCGA-85-8355 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-85-8479        TCGA-85-8481        TCGA-85-8580        TCGA-85-8582 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-85-8664        TCGA-85-8666        TCGA-85-A4CL        TCGA-85-A4QR 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-85-A50M        TCGA-85-A513        TCGA-85-A53L        TCGA-90-6837 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-90-A4ED        TCGA-90-A4EE        TCGA-92-7340        TCGA-92-7341 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-92-8063        TCGA-92-8064        TCGA-92-8065        TCGA-94-7033 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-94-7557        TCGA-94-7943        TCGA-96-7544        TCGA-96-7545 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-96-8169        TCGA-96-8170        TCGA-96-A4JK        TCGA-96-A4JL 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-NC-A5HI 
"9P GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56V        TCGA-46-3768        TCGA-46-6025 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-5898 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-56-7730        TCGA-56-7822        TCGA-56-8503        TCGA-56-8504 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-56-8622        TCGA-56-8624        TCGA-56-8625        TCGA-56-8626 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-56-A4BY        TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-58-8386        TCGA-58-8387        TCGA-58-8388        TCGA-58-8390 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-58-8391        TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-58-A46K        TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-60-2695        TCGA-60-2696        TCGA-60-2697        TCGA-60-2698 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-60-2703        TCGA-60-2704        TCGA-60-2706        TCGA-60-2707 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-60-2708        TCGA-60-2709        TCGA-60-2710        TCGA-60-2711 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-60-2712        TCGA-60-2713        TCGA-60-2714        TCGA-60-2715 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-60-2716        TCGA-60-2719        TCGA-60-2720        TCGA-60-2721 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-60-2722        TCGA-60-2723        TCGA-60-2724        TCGA-60-2725 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-60-2726        TCGA-66-2727        TCGA-66-2734        TCGA-66-2737 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2753        TCGA-66-2754 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2755        TCGA-66-2756        TCGA-66-2757        TCGA-66-2758 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2759        TCGA-66-2763        TCGA-66-2765        TCGA-66-2766 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2767        TCGA-66-2768        TCGA-66-2769        TCGA-66-2770 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2771        TCGA-66-2773        TCGA-66-2777        TCGA-66-2778 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2780        TCGA-66-2781        TCGA-66-2782        TCGA-66-2783 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2785        TCGA-66-2786        TCGA-66-2787        TCGA-66-2788 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2789        TCGA-66-2790        TCGA-66-2791        TCGA-66-2792 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2793        TCGA-66-2794        TCGA-66-2795        TCGA-66-2800 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-68-7755        TCGA-68-7756        TCGA-68-7757        TCGA-68-8250 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-68-8251        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8007 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-77-8008        TCGA-77-8009        TCGA-77-8128        TCGA-77-8130 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-77-8131        TCGA-77-8133        TCGA-77-8136        TCGA-77-8138 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8140        TCGA-77-8143        TCGA-77-8144 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-77-8145        TCGA-77-8148        TCGA-77-8150        TCGA-77-8153 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ        TCGA-77-A5G3 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6560        TCGA-85-6561 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-7950 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-85-8048        TCGA-85-8049        TCGA-85-8052        TCGA-85-8070 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-85-8071        TCGA-85-8072        TCGA-85-8276        TCGA-85-8277 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-85-8287        TCGA-85-8288        TCGA-85-8350        TCGA-85-8351 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-85-8352        TCGA-85-8353        TCGA-85-8354        TCGA-85-8355 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-85-8479        TCGA-85-8481        TCGA-85-8580        TCGA-85-8582 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-85-8664        TCGA-85-8666        TCGA-85-A4CL        TCGA-85-A4QR 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-85-A50M        TCGA-85-A513        TCGA-85-A53L        TCGA-90-6837 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-90-A4ED        TCGA-90-A4EE        TCGA-92-7340        TCGA-92-7341 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-92-8063        TCGA-92-8064        TCGA-92-8065        TCGA-94-7033 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-94-7557        TCGA-94-7943        TCGA-96-7544        TCGA-96-7545 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-96-8169        TCGA-96-8170        TCGA-96-A4JK        TCGA-96-A4JL 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-NC-A5HI 
"9P GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D17V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  9P GAIN MUTATED         0        5       12        1         4        13
  9P GAIN WILD-TYPE       1       63      121        0        46        58
                   vv
clus                STAGE IIIA STAGE IIIB STAGE IV
  9P GAIN MUTATED            6          3        1
  9P GAIN WILD-TYPE         48         17        4
D17V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  9P GAIN MUTATED     8  28   6   3
  9P GAIN WILD-TYPE  85 222  38  16
D17V4, multiclass
    clus
vv   9P GAIN MUTATED 9P GAIN WILD-TYPE
  T1               8                85
  T2              28               222
  T3               6                38
  T4               3                16
                   vv
clus                 N0  N1  N2  N3
  9P GAIN MUTATED    24  18   2   0
  9P GAIN WILD-TYPE 229  91  32   5
D17V5, multiclass
    clus
vv   9P GAIN MUTATED 9P GAIN WILD-TYPE
  N0              24               229
  N1              18                91
  N2               2                32
  N3               0                 5
                   vv
clus                 M0  M1  MX
  9P GAIN MUTATED    41   1   2
  9P GAIN WILD-TYPE 307   4  45
D17V6, multiclass
    clus
vv   9P GAIN MUTATED 9P GAIN WILD-TYPE
  M0              41               307
  M1               1                 4
  MX               2                45
D17V7, binary
                   cls
clus                  0   1
  9P GAIN MUTATED    14  31
  9P GAIN WILD-TYPE  87 274
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9P GAIN MUTATED     14   31
  9P GAIN WILD-TYPE   87  274
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  FEMALE              14                87
  MALE                31               274
D17V8, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  9P GAIN MUTATED                                       3
  9P GAIN WILD-TYPE                                     9
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  9P GAIN MUTATED                                        0
  9P GAIN WILD-TYPE                                      6
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  9P GAIN MUTATED                                         0
  9P GAIN WILD-TYPE                                       1
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  9P GAIN MUTATED                                                            42
  9P GAIN WILD-TYPE                                                         345
D17V9, multiclass
                                                             clus
vv                                                            9P GAIN MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     3
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                    0
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              42
                                                             clus
vv                                                            9P GAIN WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       9
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                      6
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               345
D17V10, binary
                   cls
clus                  0   1
  9P GAIN MUTATED     0  45
  9P GAIN WILD-TYPE  12 349
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9P GAIN MUTATED      0   45
  9P GAIN WILD-TYPE   12  349
     clus
vv    9P GAIN MUTATED 9P GAIN WILD-TYPE
  NO                0                12
  YES              45               349
D17V11, continuous
D17V12, continuous
                   vv
clus                 R0  R1  R2  RX
  9P GAIN MUTATED    34   1   0   2
  9P GAIN WILD-TYPE 296   7   4  16
D17V13, multiclass
    clus
vv   9P GAIN MUTATED 9P GAIN WILD-TYPE
  R0              34               296
  R1               1                 7
  R2               0                 4
  RX               2                16

Clustering(18) Variable = 9Q GAIN MUTATION ANALYSIS
D18V1, survival
                   sevent
clus2                 0   1
  9Q GAIN MUTATED    46  28
  9Q GAIN WILD-TYPE 193 110
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
               74               303 
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
               28               110 
$`9Q GAIN MUTATED`
TCGA-18-3407 TCGA-18-3410 TCGA-18-3412 TCGA-18-3416 TCGA-21-1072 TCGA-21-1076 
        4.47         4.80        11.34        28.34        99.16        60.89 
TCGA-22-0940 TCGA-22-0944 TCGA-22-4599 TCGA-22-4604 TCGA-22-4613 TCGA-22-5477 
       19.99         7.33        38.17        13.12        11.77        44.22 
TCGA-22-5483 TCGA-33-4533 TCGA-33-4566 TCGA-33-4583 TCGA-33-4586 TCGA-33-4589 
       18.84       114.05       173.79       141.34        14.07        10.98 
TCGA-34-2596 TCGA-34-2600 TCGA-34-5239 TCGA-34-7107 TCGA-37-3792 TCGA-37-4133 
        2.63        61.61        23.24         1.08         0.39         7.82 
TCGA-39-5030 TCGA-39-5036 TCGA-43-3394 TCGA-43-5668 TCGA-43-6143 TCGA-43-7658 
        1.94        35.64        27.02        11.47        12.36        66.51 
TCGA-43-A475 TCGA-46-3768 TCGA-46-6025 TCGA-51-4079 TCGA-52-7622 TCGA-52-7809 
        9.73         9.96        10.65         0.39        17.79         5.42 
TCGA-56-7582 TCGA-56-A4BX TCGA-58-8386 TCGA-58-8391 TCGA-58-A46M TCGA-60-2695 
        0.85         1.51         0.03        71.24        23.24        21.07 
TCGA-60-2704 TCGA-60-2710 TCGA-60-2711 TCGA-60-2722 TCGA-66-2744 TCGA-66-2756 
       37.94        66.51        41.39        29.85         0.99         0.99 
TCGA-66-2757 TCGA-66-2770 TCGA-66-2792 TCGA-68-7755 TCGA-77-7141 TCGA-77-7335 
        0.99        23.01        30.02         2.73         0.49        70.09 
TCGA-77-7465 TCGA-77-8009 TCGA-77-8133 TCGA-77-8136 TCGA-77-8144 TCGA-77-8150 
       15.75        53.95        53.92        39.09        27.39        54.41 
TCGA-77-8153 TCGA-77-A5G3 TCGA-85-7696 TCGA-85-7698 TCGA-85-7844 TCGA-85-8070 
       55.33       117.57         0.59         1.61         1.25        16.77 
TCGA-85-8072 TCGA-85-8277 TCGA-85-8353 TCGA-85-8580 TCGA-90-7769 TCGA-96-A4JK 
        1.18         0.36         1.78        14.60        11.77         8.98 
TCGA-96-A4JL TCGA-L3-A524 
        6.02        14.76 

$`9Q GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3408 TCGA-18-3409 TCGA-18-3411 TCGA-18-3414 TCGA-18-3415 
       12.16        81.07        79.46        46.52        13.02        59.51 
TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 
       24.92         1.61        43.76         6.15         2.79        90.51 
TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 TCGA-21-1075 TCGA-21-1077 
        3.02        27.16       119.54        46.88        70.13        34.78 
TCGA-21-1078 TCGA-21-1079 TCGA-21-1080 TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 
       15.55        31.69       122.43         9.30       119.80         8.78 
TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-21-A5DI 
       31.63        88.08        41.69        33.93        10.82        32.19 
TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 
       14.93         4.31        64.21         1.74        14.10        27.02 
TCGA-22-1017 TCGA-22-4591 TCGA-22-4593 TCGA-22-4594 TCGA-22-4595 TCGA-22-4596 
       48.82        20.45        35.08        48.33        24.13         0.56 
TCGA-22-4601 TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 TCGA-22-5471 TCGA-22-5472 
       34.75        32.02        19.30         9.53        31.73        64.90 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 
       63.52        14.60         0.79        54.28        71.34        79.20 
TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-22-A5C4 
       11.74        30.08        62.86        56.32        16.60         0.95 
TCGA-33-4532 TCGA-33-4538 TCGA-33-4547 TCGA-33-4582 TCGA-33-4587 TCGA-33-6737 
        7.63        97.94        43.10       103.53        54.44        19.76 
TCGA-33-6738 TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 
       26.99        31.50        28.96        32.84        31.23        50.24 
TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 
       67.79        56.38         9.04        12.00        14.07        30.94 
TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4129 TCGA-37-4130 
       18.12         4.96         3.95         0.43         6.54         8.09 
TCGA-37-4132 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5011 TCGA-39-5016 
        7.46         6.81         0.39         3.39        47.80        74.07 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       44.71        68.58        55.17        70.03        60.76         1.71 
TCGA-39-5029 TCGA-39-5031 TCGA-39-5034 TCGA-39-5035 TCGA-39-5037 TCGA-39-5039 
       24.33        27.35        36.39        15.58        35.70        17.88 
TCGA-39-5040 TCGA-43-2576 TCGA-43-2578 TCGA-43-2581 TCGA-43-3920 TCGA-43-5670 
       17.06        40.21        22.49        38.66        33.07        18.05 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 
       24.89        10.19         5.42         3.78         6.97         1.58 
TCGA-43-8115 TCGA-43-8116 TCGA-43-8118 TCGA-43-A474 TCGA-43-A56V TCGA-46-6026 
        6.64         6.35         2.93        11.61         5.06        13.87 
TCGA-51-4080 TCGA-51-4081 TCGA-52-7810 TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 
        0.39        29.95        30.31         8.75        27.45        28.93 
TCGA-56-5897 TCGA-56-5898 TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 
        0.10        18.25         2.04         1.02         0.99         0.43 
TCGA-56-7223 TCGA-56-7579 TCGA-56-7580 TCGA-56-7730 TCGA-56-7822 TCGA-56-8503 
        0.99         1.45         1.32         0.20         0.03         1.35 
TCGA-56-8504 TCGA-56-8622 TCGA-56-8624 TCGA-56-8625 TCGA-56-8626 TCGA-56-8628 
        5.82         1.78         1.18         2.07         0.56         0.53 
TCGA-56-8629 TCGA-56-A49D TCGA-56-A4BY TCGA-56-A4ZJ TCGA-56-A4ZK TCGA-56-A5DS 
        1.12         0.99         0.99         1.02         0.13         0.26 
TCGA-58-8387 TCGA-58-8388 TCGA-58-8390 TCGA-58-8392 TCGA-58-8393 TCGA-58-A46J 
       13.25        12.43        29.95        16.47        34.78        64.87 
TCGA-58-A46K TCGA-58-A46L TCGA-58-A46N TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 
       34.36        36.59        17.72         3.58        12.23        10.22 
TCGA-60-2703 TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2712 
       96.82        92.71        21.70        80.42        49.48         9.01 
TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 
       56.91        50.33        35.34        48.49        42.61         3.16 
TCGA-60-2721 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 
       32.28        35.90        23.57        26.79        11.77        16.96 
TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 
       43.10         2.01        21.07         1.02         2.01         0.92 
TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 
       20.98        25.02         0.99         2.01         1.02         2.01 
TCGA-66-2768 TCGA-66-2769 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 
        2.01         7.07        19.00         3.02         2.01        19.00 
TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 
       12.03         3.98        12.00        24.95         1.94        25.97 
TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 TCGA-66-2793 
       40.01        22.98         4.04        22.98         5.03        10.06 
TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-68-7756 TCGA-68-7757 TCGA-68-8250 
       54.08         4.01        49.05         6.64         6.94         8.02 
TCGA-68-8251 TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 
        3.12        29.56        73.08        75.09        23.28        11.18 
TCGA-77-7139 TCGA-77-7140 TCGA-77-7142 TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 
       89.95        20.78        42.25       106.95         0.16        46.78 
TCGA-77-8007 TCGA-77-8008 TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 TCGA-77-8138 
        6.51        86.76        37.81        82.92        12.59        17.69 
TCGA-77-8139 TCGA-77-8140 TCGA-77-8143 TCGA-77-8145 TCGA-77-8148 TCGA-77-8154 
      104.09        11.54        26.40         6.97         9.63        35.90 
TCGA-77-8156 TCGA-77-A5FZ TCGA-77-A5GB TCGA-77-A5GH TCGA-85-6560 TCGA-85-6561 
        0.33       126.18        30.81        23.44         0.36         0.79 
TCGA-85-6798 TCGA-85-7697 TCGA-85-7699 TCGA-85-7843 TCGA-85-7950 TCGA-85-8048 
        1.12         0.33         0.03         1.15         1.97         0.85 
TCGA-85-8049 TCGA-85-8052 TCGA-85-8071 TCGA-85-8276 TCGA-85-8287 TCGA-85-8288 
        1.97         0.53        14.07         0.43         1.45         1.78 
TCGA-85-8350 TCGA-85-8351 TCGA-85-8352 TCGA-85-8354 TCGA-85-8355 TCGA-85-8479 
        1.97         1.81         2.20         2.01         0.66         0.72 
TCGA-85-8481 TCGA-85-8582 TCGA-85-8664 TCGA-85-8666 TCGA-85-A4CL TCGA-85-A4QR 
        0.66        13.91         0.10        15.58         0.46         0.82 
TCGA-85-A50M TCGA-85-A513 TCGA-85-A53L TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 
        0.62         0.79         0.43        24.89         9.50         2.93 
TCGA-90-7964 TCGA-90-A4ED TCGA-90-A4EE TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 
       14.07         8.02        10.88         2.70         3.48         4.01 
TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 TCGA-94-7943 TCGA-96-7544 
        5.26         2.27         2.86         0.16        11.70        39.88 
TCGA-96-7545 TCGA-96-8169 TCGA-96-8170 TCGA-98-7454 TCGA-98-8020 TCGA-98-8021 
       44.15         6.18         6.90         8.42         2.73        13.58 
TCGA-98-8022 TCGA-98-8023 TCGA-J1-A4AH TCGA-L3-A4E7 TCGA-LA-A446 TCGA-MF-A522 
        7.33        10.13         7.30         1.15         1.18         3.02 
TCGA-NC-A5HE TCGA-NC-A5HG TCGA-NC-A5HI 
       56.61        50.86        37.32 

  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
             0.03              0.03 
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
           173.79            126.18 
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
           14.335            13.250 
[1] "0.0 - 173.8 (14.3)" "0.0 - 126.2 (13.2)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
  "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56V        TCGA-46-3768        TCGA-46-6025 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
  "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-5898 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-56-7730        TCGA-56-7822        TCGA-56-8503        TCGA-56-8504 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-56-8622        TCGA-56-8624        TCGA-56-8625        TCGA-56-8626 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-56-A4BY        TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-58-8386        TCGA-58-8387        TCGA-58-8388        TCGA-58-8390 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-58-8391        TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-58-A46K        TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-60-2695        TCGA-60-2696        TCGA-60-2697        TCGA-60-2698 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-60-2703        TCGA-60-2704        TCGA-60-2706        TCGA-60-2707 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-60-2708        TCGA-60-2709        TCGA-60-2710        TCGA-60-2711 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" 
       TCGA-60-2712        TCGA-60-2713        TCGA-60-2714        TCGA-60-2715 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-60-2716        TCGA-60-2719        TCGA-60-2720        TCGA-60-2721 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-60-2722        TCGA-60-2723        TCGA-60-2724        TCGA-60-2725 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-60-2726        TCGA-66-2727        TCGA-66-2734        TCGA-66-2737 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2753        TCGA-66-2754 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-66-2755        TCGA-66-2756        TCGA-66-2757        TCGA-66-2758 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-66-2759        TCGA-66-2763        TCGA-66-2765        TCGA-66-2766 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-66-2767        TCGA-66-2768        TCGA-66-2769        TCGA-66-2770 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-66-2771        TCGA-66-2773        TCGA-66-2777        TCGA-66-2778 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-66-2780        TCGA-66-2781        TCGA-66-2782        TCGA-66-2783 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-66-2785        TCGA-66-2786        TCGA-66-2787        TCGA-66-2788 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-66-2789        TCGA-66-2790        TCGA-66-2791        TCGA-66-2792 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-66-2793        TCGA-66-2794        TCGA-66-2795        TCGA-66-2800 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-68-7755        TCGA-68-7756        TCGA-68-7757        TCGA-68-8250 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-68-8251        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8007 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-77-8008        TCGA-77-8009        TCGA-77-8128        TCGA-77-8130 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-77-8131        TCGA-77-8133        TCGA-77-8136        TCGA-77-8138 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8140        TCGA-77-8143        TCGA-77-8144 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-77-8145        TCGA-77-8148        TCGA-77-8150        TCGA-77-8153 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ        TCGA-77-A5G3 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6560        TCGA-85-6561 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-7950 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-85-8048        TCGA-85-8049        TCGA-85-8052        TCGA-85-8070 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-85-8071        TCGA-85-8072        TCGA-85-8276        TCGA-85-8277 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-85-8287        TCGA-85-8288        TCGA-85-8350        TCGA-85-8351 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-85-8352        TCGA-85-8353        TCGA-85-8354        TCGA-85-8355 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-85-8479        TCGA-85-8481        TCGA-85-8580        TCGA-85-8582 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-85-8664        TCGA-85-8666        TCGA-85-A4CL        TCGA-85-A4QR 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-85-A50M        TCGA-85-A513        TCGA-85-A53L        TCGA-90-6837 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-90-A4ED        TCGA-90-A4EE        TCGA-92-7340        TCGA-92-7341 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-92-8063        TCGA-92-8064        TCGA-92-8065        TCGA-94-7033 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-94-7557        TCGA-94-7943        TCGA-96-7544        TCGA-96-7545 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-96-8169        TCGA-96-8170        TCGA-96-A4JK        TCGA-96-A4JL 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-NC-A5HI 
"9Q GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
  "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56V        TCGA-46-3768        TCGA-46-6025 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
  "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-5898 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-56-7730        TCGA-56-7822        TCGA-56-8503        TCGA-56-8504 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-56-8622        TCGA-56-8624        TCGA-56-8625        TCGA-56-8626 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-56-A4BY        TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-58-8386        TCGA-58-8387        TCGA-58-8388        TCGA-58-8390 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-58-8391        TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-58-A46K        TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-60-2695        TCGA-60-2696        TCGA-60-2697        TCGA-60-2698 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-60-2703        TCGA-60-2704        TCGA-60-2706        TCGA-60-2707 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-60-2708        TCGA-60-2709        TCGA-60-2710        TCGA-60-2711 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" 
       TCGA-60-2712        TCGA-60-2713        TCGA-60-2714        TCGA-60-2715 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-60-2716        TCGA-60-2719        TCGA-60-2720        TCGA-60-2721 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-60-2722        TCGA-60-2723        TCGA-60-2724        TCGA-60-2725 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-60-2726        TCGA-66-2727        TCGA-66-2734        TCGA-66-2737 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2753        TCGA-66-2754 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-66-2755        TCGA-66-2756        TCGA-66-2757        TCGA-66-2758 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-66-2759        TCGA-66-2763        TCGA-66-2765        TCGA-66-2766 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-66-2767        TCGA-66-2768        TCGA-66-2769        TCGA-66-2770 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-66-2771        TCGA-66-2773        TCGA-66-2777        TCGA-66-2778 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-66-2780        TCGA-66-2781        TCGA-66-2782        TCGA-66-2783 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-66-2785        TCGA-66-2786        TCGA-66-2787        TCGA-66-2788 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-66-2789        TCGA-66-2790        TCGA-66-2791        TCGA-66-2792 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-66-2793        TCGA-66-2794        TCGA-66-2795        TCGA-66-2800 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-68-7755        TCGA-68-7756        TCGA-68-7757        TCGA-68-8250 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-68-8251        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8007 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-77-8008        TCGA-77-8009        TCGA-77-8128        TCGA-77-8130 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-77-8131        TCGA-77-8133        TCGA-77-8136        TCGA-77-8138 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8140        TCGA-77-8143        TCGA-77-8144 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-77-8145        TCGA-77-8148        TCGA-77-8150        TCGA-77-8153 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ        TCGA-77-A5G3 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6560        TCGA-85-6561 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-7950 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-85-8048        TCGA-85-8049        TCGA-85-8052        TCGA-85-8070 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-85-8071        TCGA-85-8072        TCGA-85-8276        TCGA-85-8277 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-85-8287        TCGA-85-8288        TCGA-85-8350        TCGA-85-8351 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-85-8352        TCGA-85-8353        TCGA-85-8354        TCGA-85-8355 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-85-8479        TCGA-85-8481        TCGA-85-8580        TCGA-85-8582 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-85-8664        TCGA-85-8666        TCGA-85-A4CL        TCGA-85-A4QR 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-85-A50M        TCGA-85-A513        TCGA-85-A53L        TCGA-90-6837 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-90-A4ED        TCGA-90-A4EE        TCGA-92-7340        TCGA-92-7341 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-92-8063        TCGA-92-8064        TCGA-92-8065        TCGA-94-7033 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-94-7557        TCGA-94-7943        TCGA-96-7544        TCGA-96-7545 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-96-8169        TCGA-96-8170        TCGA-96-A4JK        TCGA-96-A4JL 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-NC-A5HI 
"9Q GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
  "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56V        TCGA-46-3768        TCGA-46-6025 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
  "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-5898 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-56-7730        TCGA-56-7822        TCGA-56-8503        TCGA-56-8504 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-56-8622        TCGA-56-8624        TCGA-56-8625        TCGA-56-8626 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-56-A4BY        TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-58-8386        TCGA-58-8387        TCGA-58-8388        TCGA-58-8390 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-58-8391        TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-58-A46K        TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-60-2695        TCGA-60-2696        TCGA-60-2697        TCGA-60-2698 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-60-2703        TCGA-60-2704        TCGA-60-2706        TCGA-60-2707 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-60-2708        TCGA-60-2709        TCGA-60-2710        TCGA-60-2711 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" 
       TCGA-60-2712        TCGA-60-2713        TCGA-60-2714        TCGA-60-2715 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-60-2716        TCGA-60-2719        TCGA-60-2720        TCGA-60-2721 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-60-2722        TCGA-60-2723        TCGA-60-2724        TCGA-60-2725 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-60-2726        TCGA-66-2727        TCGA-66-2734        TCGA-66-2737 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2753        TCGA-66-2754 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-66-2755        TCGA-66-2756        TCGA-66-2757        TCGA-66-2758 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-66-2759        TCGA-66-2763        TCGA-66-2765        TCGA-66-2766 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-66-2767        TCGA-66-2768        TCGA-66-2769        TCGA-66-2770 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-66-2771        TCGA-66-2773        TCGA-66-2777        TCGA-66-2778 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-66-2780        TCGA-66-2781        TCGA-66-2782        TCGA-66-2783 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-66-2785        TCGA-66-2786        TCGA-66-2787        TCGA-66-2788 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-66-2789        TCGA-66-2790        TCGA-66-2791        TCGA-66-2792 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-66-2793        TCGA-66-2794        TCGA-66-2795        TCGA-66-2800 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-68-7755        TCGA-68-7756        TCGA-68-7757        TCGA-68-8250 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-68-8251        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8007 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-77-8008        TCGA-77-8009        TCGA-77-8128        TCGA-77-8130 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-77-8131        TCGA-77-8133        TCGA-77-8136        TCGA-77-8138 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8140        TCGA-77-8143        TCGA-77-8144 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-77-8145        TCGA-77-8148        TCGA-77-8150        TCGA-77-8153 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ        TCGA-77-A5G3 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6560        TCGA-85-6561 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-7950 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-85-8048        TCGA-85-8049        TCGA-85-8052        TCGA-85-8070 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-85-8071        TCGA-85-8072        TCGA-85-8276        TCGA-85-8277 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-85-8287        TCGA-85-8288        TCGA-85-8350        TCGA-85-8351 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-85-8352        TCGA-85-8353        TCGA-85-8354        TCGA-85-8355 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-85-8479        TCGA-85-8481        TCGA-85-8580        TCGA-85-8582 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-85-8664        TCGA-85-8666        TCGA-85-A4CL        TCGA-85-A4QR 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-85-A50M        TCGA-85-A513        TCGA-85-A53L        TCGA-90-6837 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-90-A4ED        TCGA-90-A4EE        TCGA-92-7340        TCGA-92-7341 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-92-8063        TCGA-92-8064        TCGA-92-8065        TCGA-94-7033 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-94-7557        TCGA-94-7943        TCGA-96-7544        TCGA-96-7545 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-96-8169        TCGA-96-8170        TCGA-96-A4JK        TCGA-96-A4JL 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-NC-A5HI 
"9Q GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D18V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  9Q GAIN MUTATED         0        8       25        1        11        17
  9Q GAIN WILD-TYPE       1       60      108        0        39        54
                   vv
clus                STAGE IIIA STAGE IIIB STAGE IV
  9Q GAIN MUTATED            8          4        1
  9Q GAIN WILD-TYPE         46         16        4
D18V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  9Q GAIN MUTATED    16  47   8   4
  9Q GAIN WILD-TYPE  77 203  36  15
D18V4, multiclass
    clus
vv   9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  T1              16                77
  T2              47               203
  T3               8                36
  T4               4                15
                   vv
clus                 N0  N1  N2  N3
  9Q GAIN MUTATED    41  29   4   0
  9Q GAIN WILD-TYPE 212  80  30   5
D18V5, multiclass
    clus
vv   9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  N0              41               212
  N1              29                80
  N2               4                30
  N3               0                 5
                   vv
clus                 M0  M1  MX
  9Q GAIN MUTATED    71   1   2
  9Q GAIN WILD-TYPE 277   4  45
D18V6, multiclass
    clus
vv   9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  M0              71               277
  M1               1                 4
  MX               2                45
D18V7, binary
                   cls
clus                  0   1
  9Q GAIN MUTATED    24  51
  9Q GAIN WILD-TYPE  77 254
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9Q GAIN MUTATED     24   51
  9Q GAIN WILD-TYPE   77  254
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  FEMALE              24                77
  MALE                51               254
D18V8, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  9Q GAIN MUTATED                                       3
  9Q GAIN WILD-TYPE                                     9
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  9Q GAIN MUTATED                                        0
  9Q GAIN WILD-TYPE                                      6
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  9Q GAIN MUTATED                                         0
  9Q GAIN WILD-TYPE                                       1
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  9Q GAIN MUTATED                                                            72
  9Q GAIN WILD-TYPE                                                         315
D18V9, multiclass
                                                             clus
vv                                                            9Q GAIN MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     3
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                    0
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              72
                                                             clus
vv                                                            9Q GAIN WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       9
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                      6
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               315
D18V10, binary
                   cls
clus                  0   1
  9Q GAIN MUTATED     0  75
  9Q GAIN WILD-TYPE  12 319
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9Q GAIN MUTATED      0   75
  9Q GAIN WILD-TYPE   12  319
     clus
vv    9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  NO                0                12
  YES              75               319
D18V11, continuous
D18V12, continuous
                   vv
clus                 R0  R1  R2  RX
  9Q GAIN MUTATED    65   1   0   1
  9Q GAIN WILD-TYPE 265   7   4  17
D18V13, multiclass
    clus
vv   9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  R0              65               265
  R1               1                 7
  R2               0                 4
  RX               1                17

Clustering(19) Variable = 10P GAIN MUTATION ANALYSIS
D19V1, survival
                    sevent
clus2                  0   1
  10P GAIN MUTATED    33  22
  10P GAIN WILD-TYPE 206 116
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
                55                322 
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
                22                116 
$`10P GAIN MUTATED`
TCGA-18-3407 TCGA-18-3416 TCGA-18-3417 TCGA-21-1070 TCGA-21-1083 TCGA-21-5783 
        4.47        28.34        24.92       119.54         8.78        88.08 
TCGA-21-5787 TCGA-22-0944 TCGA-22-1017 TCGA-22-5473 TCGA-33-4566 TCGA-33-6737 
       10.82         7.33        48.82        63.52       173.79        19.76 
TCGA-34-2609 TCGA-34-5928 TCGA-34-7107 TCGA-37-4133 TCGA-37-4141 TCGA-43-3394 
       31.23        18.12         1.08         7.82         0.39        27.02 
TCGA-43-5668 TCGA-43-5670 TCGA-46-6025 TCGA-52-7811 TCGA-56-7222 TCGA-56-A4BX 
       11.47        18.05        10.65         8.75         0.43         1.51 
TCGA-58-A46L TCGA-60-2698 TCGA-60-2712 TCGA-60-2724 TCGA-60-2726 TCGA-66-2756 
       36.59        10.22         9.01        23.57        11.77         0.99 
TCGA-66-2763 TCGA-66-2778 TCGA-66-2782 TCGA-66-2792 TCGA-77-7140 TCGA-77-7142 
        0.99        19.00        12.00        30.02        20.78        42.25 
TCGA-77-7463 TCGA-77-8143 TCGA-77-8148 TCGA-77-8150 TCGA-85-6560 TCGA-85-6561 
       46.78        26.40         9.63        54.41         0.36         0.79 
TCGA-85-7843 TCGA-85-8350 TCGA-85-8352 TCGA-85-8582 TCGA-85-A50M TCGA-85-A53L 
        1.15         1.97         2.20        13.91         0.62         0.43 
TCGA-90-7767 TCGA-90-A4ED TCGA-94-7943 TCGA-96-7545 TCGA-98-8022 TCGA-NC-A5HG 
        2.93         8.02        11.70        44.15         7.33        50.86 
TCGA-NC-A5HI 
       37.32 

$`10P GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
       12.16        81.07        79.46         4.80        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 
       13.02        59.51         1.61        43.76         6.15         2.79 
TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 
       90.51         3.02        27.16        46.88        99.16        70.13 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1079 TCGA-21-1080 TCGA-21-1081 
       60.89        34.78        15.55        31.69       122.43         9.30 
TCGA-21-1082 TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 TCGA-21-A5DI TCGA-22-0940 
      119.80        31.63        41.69        33.93        32.19        19.99 
TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 
       14.93         4.31        64.21         1.74        14.10        27.02 
TCGA-22-4591 TCGA-22-4593 TCGA-22-4594 TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 
       20.45        35.08        48.33        24.13         0.56        38.17 
TCGA-22-4601 TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 
       34.75        13.12        32.02        19.30         9.53        11.77 
TCGA-22-5471 TCGA-22-5472 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 
       31.73        64.90        14.60        44.22         0.79        54.28 
TCGA-22-5480 TCGA-22-5481 TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 
       71.34        79.20        11.74        18.84        30.08        62.86 
TCGA-22-5491 TCGA-22-5492 TCGA-22-A5C4 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       56.32        16.60         0.95         7.63       114.05        97.94 
TCGA-33-4547 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-4587 TCGA-33-4589 
       43.10       103.53       141.34        14.07        54.44        10.98 
TCGA-33-6738 TCGA-34-2596 TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 
       26.99         2.63        61.61        31.50        28.96        32.84 
TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 
       50.24        67.79        56.38         9.04        23.24        12.00 
TCGA-34-5241 TCGA-34-5927 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 
       14.07        30.94         4.96         3.95         0.43         0.39 
TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 TCGA-37-4135 TCGA-37-5819 TCGA-39-5011 
        6.54         8.09         7.46         6.81         3.39        47.80 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 
       74.07        44.71        68.58        55.17        70.03        60.76 
TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 TCGA-39-5035 
        1.71        24.33         1.94        27.35        36.39        15.58 
TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-39-5040 TCGA-43-2576 TCGA-43-2578 
       35.64        35.70        17.88        17.06        40.21        22.49 
TCGA-43-2581 TCGA-43-3920 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 
       38.66        33.07        12.36        24.89        10.19         5.42 
TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 
        3.78         6.97         1.58        66.51         6.64         6.35 
TCGA-43-8118 TCGA-43-A474 TCGA-43-A475 TCGA-43-A56V TCGA-46-3768 TCGA-46-6026 
        2.93        11.61         9.73         5.06         9.96        13.87 
TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 TCGA-52-7810 
        0.39         0.39        29.95        17.79         5.42        30.31 
TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 TCGA-56-5898 TCGA-56-6545 TCGA-56-6546 
       27.45        28.93         0.10        18.25         2.04         1.02 
TCGA-56-7221 TCGA-56-7223 TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 TCGA-56-7730 
        0.99         0.99         1.45         1.32         0.85         0.20 
TCGA-56-7822 TCGA-56-8503 TCGA-56-8504 TCGA-56-8622 TCGA-56-8624 TCGA-56-8625 
        0.03         1.35         5.82         1.78         1.18         2.07 
TCGA-56-8626 TCGA-56-8628 TCGA-56-8629 TCGA-56-A49D TCGA-56-A4BY TCGA-56-A4ZJ 
        0.56         0.53         1.12         0.99         0.99         1.02 
TCGA-56-A4ZK TCGA-56-A5DS TCGA-58-8386 TCGA-58-8387 TCGA-58-8388 TCGA-58-8390 
        0.13         0.26         0.03        13.25        12.43        29.95 
TCGA-58-8391 TCGA-58-8392 TCGA-58-8393 TCGA-58-A46J TCGA-58-A46K TCGA-58-A46M 
       71.24        16.47        34.78        64.87        34.36        23.24 
TCGA-58-A46N TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 TCGA-60-2703 TCGA-60-2704 
       17.72        21.07         3.58        12.23        96.82        37.94 
TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 
       92.71        21.70        80.42        49.48        66.51        41.39 
TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 
       56.91        50.33        35.34        48.49        42.61         3.16 
TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2725 TCGA-66-2727 TCGA-66-2734 
       32.28        29.85        35.90        26.79        16.96        43.10 
TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 
        2.01        21.07         0.99         1.02         2.01         0.92 
TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 
        0.99        20.98        25.02         2.01         1.02         2.01 
TCGA-66-2768 TCGA-66-2769 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 
        2.01         7.07        23.01        19.00         3.02         2.01 
TCGA-66-2780 TCGA-66-2781 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 
       12.03         3.98        24.95         1.94        25.97        40.01 
TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 TCGA-66-2793 TCGA-66-2794 
       22.98         4.04        22.98         5.03        10.06        54.08 
TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 TCGA-68-7757 TCGA-68-8250 
        4.01        49.05         2.73         6.64         6.94         8.02 
TCGA-68-8251 TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 
        3.12        29.56        73.08        75.09        23.28        11.18 
TCGA-77-7139 TCGA-77-7141 TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 TCGA-77-7465 
       89.95         0.49        70.09       106.95         0.16        15.75 
TCGA-77-8007 TCGA-77-8008 TCGA-77-8009 TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 
        6.51        86.76        53.95        37.81        82.92        12.59 
TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 TCGA-77-8144 
       53.92        39.09        17.69       104.09        11.54        27.39 
TCGA-77-8145 TCGA-77-8153 TCGA-77-8154 TCGA-77-8156 TCGA-77-A5FZ TCGA-77-A5G3 
        6.97        55.33        35.90         0.33       126.18       117.57 
TCGA-77-A5GB TCGA-77-A5GH TCGA-85-6798 TCGA-85-7696 TCGA-85-7697 TCGA-85-7698 
       30.81        23.44         1.12         0.59         0.33         1.61 
TCGA-85-7699 TCGA-85-7844 TCGA-85-7950 TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 
        0.03         1.25         1.97         0.85         1.97         0.53 
TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 TCGA-85-8276 TCGA-85-8277 TCGA-85-8287 
       16.77        14.07         1.18         0.43         0.36         1.45 
TCGA-85-8288 TCGA-85-8351 TCGA-85-8353 TCGA-85-8354 TCGA-85-8355 TCGA-85-8479 
        1.78         1.81         1.78         2.01         0.66         0.72 
TCGA-85-8481 TCGA-85-8580 TCGA-85-8664 TCGA-85-8666 TCGA-85-A4CL TCGA-85-A4QR 
        0.66        14.60         0.10        15.58         0.46         0.82 
TCGA-85-A513 TCGA-90-6837 TCGA-90-7766 TCGA-90-7769 TCGA-90-7964 TCGA-90-A4EE 
        0.79        24.89         9.50        11.77        14.07        10.88 
TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 
        2.70         3.48         4.01         5.26         2.27         2.86 
TCGA-94-7557 TCGA-96-7544 TCGA-96-8169 TCGA-96-8170 TCGA-96-A4JK TCGA-96-A4JL 
        0.16        39.88         6.18         6.90         8.98         6.02 
TCGA-98-7454 TCGA-98-8020 TCGA-98-8021 TCGA-98-8023 TCGA-J1-A4AH TCGA-L3-A4E7 
        8.42         2.73        13.58        10.13         7.30         1.15 
TCGA-L3-A524 TCGA-LA-A446 TCGA-MF-A522 TCGA-NC-A5HE 
       14.76         1.18         3.02        56.61 

  10P GAIN MUTATED 10P GAIN WILD-TYPE 
              0.36               0.03 
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
            173.79             141.34 
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
             11.70              14.07 
[1] "0.4 - 173.8 (11.7)" "0.0 - 141.3 (14.1)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
  "10P GAIN MUTATED"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-22-A5C4         TCGA-33-4532         TCGA-33-4533 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-33-4538         TCGA-33-4547         TCGA-33-4566 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-33-4582         TCGA-33-4583         TCGA-33-4586 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-33-4587         TCGA-33-4589         TCGA-33-6737 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-33-6738         TCGA-34-2596         TCGA-34-2600 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-34-2604         TCGA-34-2605         TCGA-34-2608 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-34-2609         TCGA-34-5231         TCGA-34-5232 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-34-5234         TCGA-34-5236         TCGA-34-5239 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-34-5240         TCGA-34-5241         TCGA-34-5927 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-34-5928         TCGA-34-5929         TCGA-34-7107 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-3792 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4132 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-37-4133         TCGA-37-4135         TCGA-37-4141 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-37-5819         TCGA-39-5011         TCGA-39-5016 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-39-5019         TCGA-39-5021         TCGA-39-5022 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-39-5024         TCGA-39-5027         TCGA-39-5028 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-39-5029         TCGA-39-5030         TCGA-39-5031 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-39-5034         TCGA-39-5035         TCGA-39-5036 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-39-5037         TCGA-39-5039         TCGA-39-5040 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-43-8118 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-43-A474         TCGA-43-A475         TCGA-43-A56V 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-46-3768         TCGA-46-6025         TCGA-46-6026 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-51-4079         TCGA-51-4080         TCGA-51-4081 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-52-7622         TCGA-52-7809         TCGA-52-7810 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-52-7811         TCGA-52-7812         TCGA-56-1622 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-56-5897         TCGA-56-5898         TCGA-56-6545 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-56-6546         TCGA-56-7221         TCGA-56-7222 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-56-7223         TCGA-56-7579         TCGA-56-7580 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-56-7582         TCGA-56-7730         TCGA-56-7822 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-56-8503         TCGA-56-8504         TCGA-56-8622 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-56-8624         TCGA-56-8625         TCGA-56-8626 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-56-8628         TCGA-56-8629         TCGA-56-A49D 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-56-A4BX         TCGA-56-A4BY         TCGA-56-A4ZJ 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-56-A4ZK         TCGA-56-A5DS         TCGA-58-8386 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-58-8387         TCGA-58-8388         TCGA-58-8390 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-58-8391         TCGA-58-8392         TCGA-58-8393 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-58-A46J         TCGA-58-A46K         TCGA-58-A46L 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-58-A46M         TCGA-58-A46N         TCGA-60-2695 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-60-2696         TCGA-60-2697         TCGA-60-2698 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-60-2703         TCGA-60-2704         TCGA-60-2706 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2756 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2770         TCGA-66-2771         TCGA-66-2773 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-66-2785         TCGA-66-2786         TCGA-66-2787 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-68-7755         TCGA-68-7756         TCGA-68-7757 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-68-8250         TCGA-68-8251         TCGA-77-6842 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-77-6843         TCGA-77-6844         TCGA-77-6845 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-77-7138         TCGA-77-7139         TCGA-77-7140 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-77-7141         TCGA-77-7142         TCGA-77-7335 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-77-7337         TCGA-77-7338         TCGA-77-7463 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-77-7465         TCGA-77-8007         TCGA-77-8008 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-77-8009         TCGA-77-8128         TCGA-77-8130 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-77-8131         TCGA-77-8133         TCGA-77-8136 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-77-8138         TCGA-77-8139         TCGA-77-8140 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-77-8143         TCGA-77-8144         TCGA-77-8145 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-77-8148         TCGA-77-8150         TCGA-77-8153 
  "10P GAIN MUTATED"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-77-8154         TCGA-77-8156         TCGA-77-A5FZ 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-77-A5G3         TCGA-77-A5GB         TCGA-77-A5GH 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
  "10P GAIN MUTATED"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-96-8169         TCGA-96-8170         TCGA-96-A4JK 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-96-A4JL         TCGA-98-7454         TCGA-98-8020 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-LA-A446         TCGA-MF-A522         TCGA-NC-A5HE 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
  "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
  "10P GAIN MUTATED"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-22-A5C4         TCGA-33-4532         TCGA-33-4533 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-33-4538         TCGA-33-4547         TCGA-33-4566 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-33-4582         TCGA-33-4583         TCGA-33-4586 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-33-4587         TCGA-33-4589         TCGA-33-6737 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-33-6738         TCGA-34-2596         TCGA-34-2600 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-34-2604         TCGA-34-2605         TCGA-34-2608 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-34-2609         TCGA-34-5231         TCGA-34-5232 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-34-5234         TCGA-34-5236         TCGA-34-5239 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-34-5240         TCGA-34-5241         TCGA-34-5927 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-34-5928         TCGA-34-5929         TCGA-34-7107 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-3792 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4132 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-37-4133         TCGA-37-4135         TCGA-37-4141 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-37-5819         TCGA-39-5011         TCGA-39-5016 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-39-5019         TCGA-39-5021         TCGA-39-5022 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-39-5024         TCGA-39-5027         TCGA-39-5028 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-39-5029         TCGA-39-5030         TCGA-39-5031 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-39-5034         TCGA-39-5035         TCGA-39-5036 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-39-5037         TCGA-39-5039         TCGA-39-5040 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-43-8118 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-43-A474         TCGA-43-A475         TCGA-43-A56V 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-46-3768         TCGA-46-6025         TCGA-46-6026 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-51-4079         TCGA-51-4080         TCGA-51-4081 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-52-7622         TCGA-52-7809         TCGA-52-7810 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-52-7811         TCGA-52-7812         TCGA-56-1622 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-56-5897         TCGA-56-5898         TCGA-56-6545 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-56-6546         TCGA-56-7221         TCGA-56-7222 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-56-7223         TCGA-56-7579         TCGA-56-7580 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-56-7582         TCGA-56-7730         TCGA-56-7822 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-56-8503         TCGA-56-8504         TCGA-56-8622 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-56-8624         TCGA-56-8625         TCGA-56-8626 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-56-8628         TCGA-56-8629         TCGA-56-A49D 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-56-A4BX         TCGA-56-A4BY         TCGA-56-A4ZJ 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-56-A4ZK         TCGA-56-A5DS         TCGA-58-8386 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-58-8387         TCGA-58-8388         TCGA-58-8390 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-58-8391         TCGA-58-8392         TCGA-58-8393 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-58-A46J         TCGA-58-A46K         TCGA-58-A46L 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-58-A46M         TCGA-58-A46N         TCGA-60-2695 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-60-2696         TCGA-60-2697         TCGA-60-2698 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-60-2703         TCGA-60-2704         TCGA-60-2706 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2756 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2770         TCGA-66-2771         TCGA-66-2773 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-66-2785         TCGA-66-2786         TCGA-66-2787 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-68-7755         TCGA-68-7756         TCGA-68-7757 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-68-8250         TCGA-68-8251         TCGA-77-6842 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-77-6843         TCGA-77-6844         TCGA-77-6845 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-77-7138         TCGA-77-7139         TCGA-77-7140 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-77-7141         TCGA-77-7142         TCGA-77-7335 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-77-7337         TCGA-77-7338         TCGA-77-7463 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-77-7465         TCGA-77-8007         TCGA-77-8008 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-77-8009         TCGA-77-8128         TCGA-77-8130 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-77-8131         TCGA-77-8133         TCGA-77-8136 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-77-8138         TCGA-77-8139         TCGA-77-8140 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-77-8143         TCGA-77-8144         TCGA-77-8145 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-77-8148         TCGA-77-8150         TCGA-77-8153 
  "10P GAIN MUTATED"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-77-8154         TCGA-77-8156         TCGA-77-A5FZ 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-77-A5G3         TCGA-77-A5GB         TCGA-77-A5GH 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
  "10P GAIN MUTATED"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-96-8169         TCGA-96-8170         TCGA-96-A4JK 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-96-A4JL         TCGA-98-7454         TCGA-98-8020 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-LA-A446         TCGA-MF-A522         TCGA-NC-A5HE 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
  "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
  "10P GAIN MUTATED"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-22-A5C4         TCGA-33-4532         TCGA-33-4533 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-33-4538         TCGA-33-4547         TCGA-33-4566 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-33-4582         TCGA-33-4583         TCGA-33-4586 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-33-4587         TCGA-33-4589         TCGA-33-6737 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-33-6738         TCGA-34-2596         TCGA-34-2600 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-34-2604         TCGA-34-2605         TCGA-34-2608 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-34-2609         TCGA-34-5231         TCGA-34-5232 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-34-5234         TCGA-34-5236         TCGA-34-5239 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-34-5240         TCGA-34-5241         TCGA-34-5927 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-34-5928         TCGA-34-5929         TCGA-34-7107 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-3792 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4132 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-37-4133         TCGA-37-4135         TCGA-37-4141 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-37-5819         TCGA-39-5011         TCGA-39-5016 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-39-5019         TCGA-39-5021         TCGA-39-5022 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-39-5024         TCGA-39-5027         TCGA-39-5028 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-39-5029         TCGA-39-5030         TCGA-39-5031 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-39-5034         TCGA-39-5035         TCGA-39-5036 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-39-5037         TCGA-39-5039         TCGA-39-5040 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-43-8118 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-43-A474         TCGA-43-A475         TCGA-43-A56V 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-46-3768         TCGA-46-6025         TCGA-46-6026 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-51-4079         TCGA-51-4080         TCGA-51-4081 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-52-7622         TCGA-52-7809         TCGA-52-7810 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-52-7811         TCGA-52-7812         TCGA-56-1622 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-56-5897         TCGA-56-5898         TCGA-56-6545 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-56-6546         TCGA-56-7221         TCGA-56-7222 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-56-7223         TCGA-56-7579         TCGA-56-7580 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-56-7582         TCGA-56-7730         TCGA-56-7822 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-56-8503         TCGA-56-8504         TCGA-56-8622 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-56-8624         TCGA-56-8625         TCGA-56-8626 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-56-8628         TCGA-56-8629         TCGA-56-A49D 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-56-A4BX         TCGA-56-A4BY         TCGA-56-A4ZJ 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-56-A4ZK         TCGA-56-A5DS         TCGA-58-8386 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-58-8387         TCGA-58-8388         TCGA-58-8390 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-58-8391         TCGA-58-8392         TCGA-58-8393 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-58-A46J         TCGA-58-A46K         TCGA-58-A46L 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-58-A46M         TCGA-58-A46N         TCGA-60-2695 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-60-2696         TCGA-60-2697         TCGA-60-2698 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-60-2703         TCGA-60-2704         TCGA-60-2706 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2756 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2770         TCGA-66-2771         TCGA-66-2773 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-66-2785         TCGA-66-2786         TCGA-66-2787 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-68-7755         TCGA-68-7756         TCGA-68-7757 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-68-8250         TCGA-68-8251         TCGA-77-6842 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-77-6843         TCGA-77-6844         TCGA-77-6845 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-77-7138         TCGA-77-7139         TCGA-77-7140 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-77-7141         TCGA-77-7142         TCGA-77-7335 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-77-7337         TCGA-77-7338         TCGA-77-7463 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-77-7465         TCGA-77-8007         TCGA-77-8008 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-77-8009         TCGA-77-8128         TCGA-77-8130 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-77-8131         TCGA-77-8133         TCGA-77-8136 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-77-8138         TCGA-77-8139         TCGA-77-8140 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-77-8143         TCGA-77-8144         TCGA-77-8145 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-77-8148         TCGA-77-8150         TCGA-77-8153 
  "10P GAIN MUTATED"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-77-8154         TCGA-77-8156         TCGA-77-A5FZ 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-77-A5G3         TCGA-77-A5GB         TCGA-77-A5GH 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
  "10P GAIN MUTATED"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-96-8169         TCGA-96-8170         TCGA-96-A4JK 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-96-A4JL         TCGA-98-7454         TCGA-98-8020 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-LA-A446         TCGA-MF-A522         TCGA-NC-A5HE 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
  "10P GAIN MUTATED"   "10P GAIN MUTATED" 
[1] "hr=" "1.2"
D19V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  10P GAIN MUTATED         0        9       12        1         9        12
  10P GAIN WILD-TYPE       1       59      121        0        41        59
                    vv
clus                 STAGE IIIA STAGE IIIB STAGE IV
  10P GAIN MUTATED           11          3        1
  10P GAIN WILD-TYPE         43         17        4
D19V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  10P GAIN MUTATED    10  39   8   2
  10P GAIN WILD-TYPE  83 211  36  17
D19V4, multiclass
    clus
vv   10P GAIN MUTATED 10P GAIN WILD-TYPE
  T1               10                 83
  T2               39                211
  T3                8                 36
  T4                2                 17
                    vv
clus                  N0  N1  N2  N3
  10P GAIN MUTATED    33  19   5   1
  10P GAIN WILD-TYPE 220  90  29   4
D19V5, multiclass
    clus
vv   10P GAIN MUTATED 10P GAIN WILD-TYPE
  N0               33                220
  N1               19                 90
  N2                5                 29
  N3                1                  4
                    vv
clus                  M0  M1  MX
  10P GAIN MUTATED    51   1   6
  10P GAIN WILD-TYPE 297   4  41
D19V6, multiclass
    clus
vv   10P GAIN MUTATED 10P GAIN WILD-TYPE
  M0               51                297
  M1                1                  4
  MX                6                 41
D19V7, binary
                    cls
clus                   0   1
  10P GAIN MUTATED    10  49
  10P GAIN WILD-TYPE  91 256
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10P GAIN MUTATED     10   49
  10P GAIN WILD-TYPE   91  256
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  FEMALE               10                 91
  MALE                 49                256
D19V8, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  10P GAIN MUTATED                                       2
  10P GAIN WILD-TYPE                                    10
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  10P GAIN MUTATED                                        0
  10P GAIN WILD-TYPE                                      6
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  10P GAIN MUTATED                                         0
  10P GAIN WILD-TYPE                                       1
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  10P GAIN MUTATED                                                            57
  10P GAIN WILD-TYPE                                                         330
D19V9, multiclass
                                                             clus
vv                                                            10P GAIN MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      2
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                     0
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                    0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               57
                                                             clus
vv                                                            10P GAIN WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       10
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                       6
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                      1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                330
D19V10, binary
                    cls
clus                   0   1
  10P GAIN MUTATED     1  58
  10P GAIN WILD-TYPE  11 336
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10P GAIN MUTATED      1   58
  10P GAIN WILD-TYPE   11  336
     clus
vv    10P GAIN MUTATED 10P GAIN WILD-TYPE
  NO                 1                 11
  YES               58                336
D19V11, continuous
D19V12, continuous
                    vv
clus                  R0  R1  R2  RX
  10P GAIN MUTATED    49   0   1   1
  10P GAIN WILD-TYPE 281   8   3  17
D19V13, multiclass
    clus
vv   10P GAIN MUTATED 10P GAIN WILD-TYPE
  R0               49                281
  R1                0                  8
  R2                1                  3
  RX                1                 17

Clustering(20) Variable = 10Q GAIN MUTATION ANALYSIS
D20V1, survival
                    sevent
clus2                  0   1
  10Q GAIN MUTATED    20  11
  10Q GAIN WILD-TYPE 219 127
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                31                346 
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                11                127 
$`10Q GAIN MUTATED`
TCGA-18-3416 TCGA-21-1070 TCGA-21-1083 TCGA-21-5786 TCGA-21-5787 TCGA-22-5473 
       28.34       119.54         8.78        33.93        10.82        63.52 
TCGA-33-4566 TCGA-33-4582 TCGA-34-2609 TCGA-34-5241 TCGA-34-5928 TCGA-37-4141 
      173.79       103.53        31.23        14.07        18.12         0.39 
TCGA-43-5670 TCGA-52-7811 TCGA-56-7222 TCGA-60-2724 TCGA-60-2726 TCGA-77-7140 
       18.05         8.75         0.43        23.57        11.77        20.78 
TCGA-77-7142 TCGA-77-8130 TCGA-77-8150 TCGA-85-6561 TCGA-85-7843 TCGA-85-8350 
       42.25        82.92        54.41         0.79         1.15         1.97 
TCGA-85-8352 TCGA-85-A50M TCGA-85-A53L TCGA-90-7767 TCGA-90-A4ED TCGA-94-7943 
        2.20         0.62         0.43         2.93         8.02        11.70 
TCGA-NC-A5HG 
       50.86 

$`10Q GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       11.34        13.02        59.51        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1071 
        6.15         2.79        90.51         3.02        27.16        46.88 
TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1079 
       99.16        70.13        60.89        34.78        15.55        31.69 
TCGA-21-1080 TCGA-21-1081 TCGA-21-1082 TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 
      122.43         9.30       119.80        31.63        88.08        41.69 
TCGA-21-A5DI TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 
       32.19        19.99         7.33        14.93         4.31        64.21 
TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 TCGA-22-4593 
        1.74        14.10        27.02        48.82        20.45        35.08 
TCGA-22-4594 TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 
       48.33        24.13         0.56        38.17        34.75        13.12 
TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 
       32.02        19.30         9.53        11.77        31.73        64.90 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 
       14.60        44.22         0.79        54.28        71.34        79.20 
TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 
       11.74        18.84        30.08        62.86        56.32        16.60 
TCGA-22-A5C4 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4583 
        0.95         7.63       114.05        97.94        43.10       141.34 
TCGA-33-4586 TCGA-33-4587 TCGA-33-4589 TCGA-33-6737 TCGA-33-6738 TCGA-34-2596 
       14.07        54.44        10.98        19.76        26.99         2.63 
TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 
       61.61        31.50        28.96        32.84        50.24        67.79 
TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5927 TCGA-34-5929 
       56.38         9.04        23.24        12.00        30.94         4.96 
TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 
        1.08         3.95         0.43         0.39         6.54         8.09 
TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 TCGA-37-5819 TCGA-39-5011 TCGA-39-5016 
        7.46         7.82         6.81         3.39        47.80        74.07 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       44.71        68.58        55.17        70.03        60.76         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 TCGA-39-5035 TCGA-39-5036 
       24.33         1.94        27.35        36.39        15.58        35.64 
TCGA-39-5037 TCGA-39-5039 TCGA-39-5040 TCGA-43-2576 TCGA-43-2578 TCGA-43-2581 
       35.70        17.88        17.06        40.21        22.49        38.66 
TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 
       27.02        33.07        11.47        12.36        24.89        10.19 
TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 
        5.42         3.78         6.97         1.58        66.51         6.64 
TCGA-43-8116 TCGA-43-8118 TCGA-43-A474 TCGA-43-A475 TCGA-43-A56V TCGA-46-3768 
        6.35         2.93        11.61         9.73         5.06         9.96 
TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 
       10.65        13.87         0.39         0.39        29.95        17.79 
TCGA-52-7809 TCGA-52-7810 TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 TCGA-56-5898 
        5.42        30.31        27.45        28.93         0.10        18.25 
TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 TCGA-56-7223 TCGA-56-7579 TCGA-56-7580 
        2.04         1.02         0.99         0.99         1.45         1.32 
TCGA-56-7582 TCGA-56-7730 TCGA-56-7822 TCGA-56-8503 TCGA-56-8504 TCGA-56-8622 
        0.85         0.20         0.03         1.35         5.82         1.78 
TCGA-56-8624 TCGA-56-8625 TCGA-56-8626 TCGA-56-8628 TCGA-56-8629 TCGA-56-A49D 
        1.18         2.07         0.56         0.53         1.12         0.99 
TCGA-56-A4BX TCGA-56-A4BY TCGA-56-A4ZJ TCGA-56-A4ZK TCGA-56-A5DS TCGA-58-8386 
        1.51         0.99         1.02         0.13         0.26         0.03 
TCGA-58-8387 TCGA-58-8388 TCGA-58-8390 TCGA-58-8391 TCGA-58-8392 TCGA-58-8393 
       13.25        12.43        29.95        71.24        16.47        34.78 
TCGA-58-A46J TCGA-58-A46K TCGA-58-A46L TCGA-58-A46M TCGA-58-A46N TCGA-60-2695 
       64.87        34.36        36.59        23.24        17.72        21.07 
TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 
        3.58        12.23        10.22        96.82        37.94        92.71 
TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 
       21.70        80.42        49.48        66.51        41.39         9.01 
TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 
       56.91        50.33        35.34        48.49        42.61         3.16 
TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2725 TCGA-66-2727 TCGA-66-2734 
       32.28        29.85        35.90        26.79        16.96        43.10 
TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 
        2.01        21.07         0.99         1.02         2.01         0.92 
TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 
        0.99         0.99        20.98        25.02         0.99         2.01 
TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 TCGA-66-2770 TCGA-66-2771 
        1.02         2.01         2.01         7.07        23.01        19.00 
TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 
        3.02         2.01        19.00        12.03         3.98        12.00 
TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 
       24.95         1.94        25.97        40.01        22.98         4.04 
TCGA-66-2790 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 
       22.98         5.03        30.02        10.06        54.08         4.01 
TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 TCGA-68-7757 TCGA-68-8250 TCGA-68-8251 
       49.05         2.73         6.64         6.94         8.02         3.12 
TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 
       29.56        73.08        75.09        23.28        11.18        89.95 
TCGA-77-7141 TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 
        0.49        70.09       106.95         0.16        46.78        15.75 
TCGA-77-8007 TCGA-77-8008 TCGA-77-8009 TCGA-77-8128 TCGA-77-8131 TCGA-77-8133 
        6.51        86.76        53.95        37.81        12.59        53.92 
TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 TCGA-77-8143 TCGA-77-8144 
       39.09        17.69       104.09        11.54        26.40        27.39 
TCGA-77-8145 TCGA-77-8148 TCGA-77-8153 TCGA-77-8154 TCGA-77-8156 TCGA-77-A5FZ 
        6.97         9.63        55.33        35.90         0.33       126.18 
TCGA-77-A5G3 TCGA-77-A5GB TCGA-77-A5GH TCGA-85-6560 TCGA-85-6798 TCGA-85-7696 
      117.57        30.81        23.44         0.36         1.12         0.59 
TCGA-85-7697 TCGA-85-7698 TCGA-85-7699 TCGA-85-7844 TCGA-85-7950 TCGA-85-8048 
        0.33         1.61         0.03         1.25         1.97         0.85 
TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 TCGA-85-8276 
        1.97         0.53        16.77        14.07         1.18         0.43 
TCGA-85-8277 TCGA-85-8287 TCGA-85-8288 TCGA-85-8351 TCGA-85-8353 TCGA-85-8354 
        0.36         1.45         1.78         1.81         1.78         2.01 
TCGA-85-8355 TCGA-85-8479 TCGA-85-8481 TCGA-85-8580 TCGA-85-8582 TCGA-85-8664 
        0.66         0.72         0.66        14.60        13.91         0.10 
TCGA-85-8666 TCGA-85-A4CL TCGA-85-A4QR TCGA-85-A513 TCGA-90-6837 TCGA-90-7766 
       15.58         0.46         0.82         0.79        24.89         9.50 
TCGA-90-7769 TCGA-90-7964 TCGA-90-A4EE TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 
       11.77        14.07        10.88         2.70         3.48         4.01 
TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 TCGA-96-7544 TCGA-96-7545 
        5.26         2.27         2.86         0.16        39.88        44.15 
TCGA-96-8169 TCGA-96-8170 TCGA-96-A4JK TCGA-96-A4JL TCGA-98-7454 TCGA-98-8020 
        6.18         6.90         8.98         6.02         8.42         2.73 
TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 TCGA-J1-A4AH TCGA-L3-A4E7 TCGA-L3-A524 
       13.58         7.33        10.13         7.30         1.15        14.76 
TCGA-LA-A446 TCGA-MF-A522 TCGA-NC-A5HE TCGA-NC-A5HI 
        1.18         3.02        56.61        37.32 

  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
              0.39               0.03 
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
            173.79             141.34 
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
            14.070             13.415 
[1] "0.4 - 173.8 (14.1)" "0.0 - 141.3 (13.4)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
  "10Q GAIN MUTATED"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-A5C4         TCGA-33-4532         TCGA-33-4533 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-33-4538         TCGA-33-4547         TCGA-33-4566 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-33-4582         TCGA-33-4583         TCGA-33-4586 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-33-4587         TCGA-33-4589         TCGA-33-6737 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-33-6738         TCGA-34-2596         TCGA-34-2600 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-34-2604         TCGA-34-2605         TCGA-34-2608 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-34-2609         TCGA-34-5231         TCGA-34-5232 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-34-5234         TCGA-34-5236         TCGA-34-5239 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-34-5240         TCGA-34-5241         TCGA-34-5927 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-34-5928         TCGA-34-5929         TCGA-34-7107 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-3792 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4132 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-37-4133         TCGA-37-4135         TCGA-37-4141 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-37-5819         TCGA-39-5011         TCGA-39-5016 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-39-5019         TCGA-39-5021         TCGA-39-5022 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-39-5024         TCGA-39-5027         TCGA-39-5028 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-39-5029         TCGA-39-5030         TCGA-39-5031 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-39-5034         TCGA-39-5035         TCGA-39-5036 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-39-5037         TCGA-39-5039         TCGA-39-5040 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-43-8118 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-43-A474         TCGA-43-A475         TCGA-43-A56V 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-46-3768         TCGA-46-6025         TCGA-46-6026 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-51-4079         TCGA-51-4080         TCGA-51-4081 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-52-7622         TCGA-52-7809         TCGA-52-7810 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-52-7811         TCGA-52-7812         TCGA-56-1622 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-56-5897         TCGA-56-5898         TCGA-56-6545 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-56-6546         TCGA-56-7221         TCGA-56-7222 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-56-7223         TCGA-56-7579         TCGA-56-7580 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-56-7582         TCGA-56-7730         TCGA-56-7822 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-56-8503         TCGA-56-8504         TCGA-56-8622 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-56-8624         TCGA-56-8625         TCGA-56-8626 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-56-8628         TCGA-56-8629         TCGA-56-A49D 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-56-A4BX         TCGA-56-A4BY         TCGA-56-A4ZJ 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-56-A4ZK         TCGA-56-A5DS         TCGA-58-8386 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-58-8387         TCGA-58-8388         TCGA-58-8390 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-58-8391         TCGA-58-8392         TCGA-58-8393 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-58-A46J         TCGA-58-A46K         TCGA-58-A46L 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-58-A46M         TCGA-58-A46N         TCGA-60-2695 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-60-2696         TCGA-60-2697         TCGA-60-2698 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-60-2703         TCGA-60-2704         TCGA-60-2706 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2756 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2770         TCGA-66-2771         TCGA-66-2773 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2785         TCGA-66-2786         TCGA-66-2787 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-68-7755         TCGA-68-7756         TCGA-68-7757 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-68-8250         TCGA-68-8251         TCGA-77-6842 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-77-6843         TCGA-77-6844         TCGA-77-6845 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-77-7138         TCGA-77-7139         TCGA-77-7140 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-77-7141         TCGA-77-7142         TCGA-77-7335 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-77-7337         TCGA-77-7338         TCGA-77-7463 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-77-7465         TCGA-77-8007         TCGA-77-8008 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-77-8009         TCGA-77-8128         TCGA-77-8130 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-77-8131         TCGA-77-8133         TCGA-77-8136 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-77-8138         TCGA-77-8139         TCGA-77-8140 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-77-8143         TCGA-77-8144         TCGA-77-8145 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-77-8148         TCGA-77-8150         TCGA-77-8153 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-77-8154         TCGA-77-8156         TCGA-77-A5FZ 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-77-A5G3         TCGA-77-A5GB         TCGA-77-A5GH 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-96-8169         TCGA-96-8170         TCGA-96-A4JK 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-96-A4JL         TCGA-98-7454         TCGA-98-8020 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-LA-A446         TCGA-MF-A522         TCGA-NC-A5HE 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
  "10Q GAIN MUTATED"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-A5C4         TCGA-33-4532         TCGA-33-4533 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-33-4538         TCGA-33-4547         TCGA-33-4566 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-33-4582         TCGA-33-4583         TCGA-33-4586 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
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"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
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"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-34-2604         TCGA-34-2605         TCGA-34-2608 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-34-2609         TCGA-34-5231         TCGA-34-5232 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-34-5234         TCGA-34-5236         TCGA-34-5239 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-34-5240         TCGA-34-5241         TCGA-34-5927 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-34-5928         TCGA-34-5929         TCGA-34-7107 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
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"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4132 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-37-4133         TCGA-37-4135         TCGA-37-4141 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-37-5819         TCGA-39-5011         TCGA-39-5016 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-39-5019         TCGA-39-5021         TCGA-39-5022 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-39-5024         TCGA-39-5027         TCGA-39-5028 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-39-5029         TCGA-39-5030         TCGA-39-5031 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-39-5034         TCGA-39-5035         TCGA-39-5036 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-39-5037         TCGA-39-5039         TCGA-39-5040 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-43-8118 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-43-A474         TCGA-43-A475         TCGA-43-A56V 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-46-3768         TCGA-46-6025         TCGA-46-6026 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-51-4079         TCGA-51-4080         TCGA-51-4081 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-52-7622         TCGA-52-7809         TCGA-52-7810 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-52-7811         TCGA-52-7812         TCGA-56-1622 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-56-5897         TCGA-56-5898         TCGA-56-6545 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-56-6546         TCGA-56-7221         TCGA-56-7222 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-56-7223         TCGA-56-7579         TCGA-56-7580 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-56-7582         TCGA-56-7730         TCGA-56-7822 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-56-8503         TCGA-56-8504         TCGA-56-8622 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-56-8624         TCGA-56-8625         TCGA-56-8626 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-56-8628         TCGA-56-8629         TCGA-56-A49D 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-56-A4BX         TCGA-56-A4BY         TCGA-56-A4ZJ 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-56-A4ZK         TCGA-56-A5DS         TCGA-58-8386 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-58-8387         TCGA-58-8388         TCGA-58-8390 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-58-8391         TCGA-58-8392         TCGA-58-8393 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-58-A46J         TCGA-58-A46K         TCGA-58-A46L 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-58-A46M         TCGA-58-A46N         TCGA-60-2695 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-60-2696         TCGA-60-2697         TCGA-60-2698 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
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"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2756 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2770         TCGA-66-2771         TCGA-66-2773 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2785         TCGA-66-2786         TCGA-66-2787 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-68-7755         TCGA-68-7756         TCGA-68-7757 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-68-8250         TCGA-68-8251         TCGA-77-6842 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-77-6843         TCGA-77-6844         TCGA-77-6845 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-77-7138         TCGA-77-7139         TCGA-77-7140 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-77-7141         TCGA-77-7142         TCGA-77-7335 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-77-7337         TCGA-77-7338         TCGA-77-7463 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-77-7465         TCGA-77-8007         TCGA-77-8008 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-77-8009         TCGA-77-8128         TCGA-77-8130 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-77-8131         TCGA-77-8133         TCGA-77-8136 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-77-8138         TCGA-77-8139         TCGA-77-8140 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-77-8143         TCGA-77-8144         TCGA-77-8145 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-77-8148         TCGA-77-8150         TCGA-77-8153 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-77-8154         TCGA-77-8156         TCGA-77-A5FZ 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-77-A5G3         TCGA-77-A5GB         TCGA-77-A5GH 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
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"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
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"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
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"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
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  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
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  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
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  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
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  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
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  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
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"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
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"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
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"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
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  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
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"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
  "10Q GAIN MUTATED"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-A5C4         TCGA-33-4532         TCGA-33-4533 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-33-4538         TCGA-33-4547         TCGA-33-4566 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-33-4582         TCGA-33-4583         TCGA-33-4586 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-33-4587         TCGA-33-4589         TCGA-33-6737 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-33-6738         TCGA-34-2596         TCGA-34-2600 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-34-2604         TCGA-34-2605         TCGA-34-2608 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-34-2609         TCGA-34-5231         TCGA-34-5232 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-34-5234         TCGA-34-5236         TCGA-34-5239 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-34-5240         TCGA-34-5241         TCGA-34-5927 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-34-5928         TCGA-34-5929         TCGA-34-7107 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-3792 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4132 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-37-4133         TCGA-37-4135         TCGA-37-4141 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-37-5819         TCGA-39-5011         TCGA-39-5016 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-39-5019         TCGA-39-5021         TCGA-39-5022 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-39-5024         TCGA-39-5027         TCGA-39-5028 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-39-5029         TCGA-39-5030         TCGA-39-5031 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-39-5034         TCGA-39-5035         TCGA-39-5036 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-39-5037         TCGA-39-5039         TCGA-39-5040 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-43-8118 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-43-A474         TCGA-43-A475         TCGA-43-A56V 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-46-3768         TCGA-46-6025         TCGA-46-6026 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-51-4079         TCGA-51-4080         TCGA-51-4081 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-52-7622         TCGA-52-7809         TCGA-52-7810 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-52-7811         TCGA-52-7812         TCGA-56-1622 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-56-5897         TCGA-56-5898         TCGA-56-6545 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-56-6546         TCGA-56-7221         TCGA-56-7222 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-56-7223         TCGA-56-7579         TCGA-56-7580 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-56-7582         TCGA-56-7730         TCGA-56-7822 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-56-8503         TCGA-56-8504         TCGA-56-8622 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-56-8624         TCGA-56-8625         TCGA-56-8626 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-56-8628         TCGA-56-8629         TCGA-56-A49D 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-56-A4BX         TCGA-56-A4BY         TCGA-56-A4ZJ 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-56-A4ZK         TCGA-56-A5DS         TCGA-58-8386 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-58-8387         TCGA-58-8388         TCGA-58-8390 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-58-8391         TCGA-58-8392         TCGA-58-8393 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-58-A46J         TCGA-58-A46K         TCGA-58-A46L 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-58-A46M         TCGA-58-A46N         TCGA-60-2695 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-60-2696         TCGA-60-2697         TCGA-60-2698 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-60-2703         TCGA-60-2704         TCGA-60-2706 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2756 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2770         TCGA-66-2771         TCGA-66-2773 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2785         TCGA-66-2786         TCGA-66-2787 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-68-7755         TCGA-68-7756         TCGA-68-7757 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-68-8250         TCGA-68-8251         TCGA-77-6842 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-77-6843         TCGA-77-6844         TCGA-77-6845 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-77-7138         TCGA-77-7139         TCGA-77-7140 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-77-7141         TCGA-77-7142         TCGA-77-7335 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-77-7337         TCGA-77-7338         TCGA-77-7463 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-77-7465         TCGA-77-8007         TCGA-77-8008 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-77-8009         TCGA-77-8128         TCGA-77-8130 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-77-8131         TCGA-77-8133         TCGA-77-8136 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-77-8138         TCGA-77-8139         TCGA-77-8140 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-77-8143         TCGA-77-8144         TCGA-77-8145 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-77-8148         TCGA-77-8150         TCGA-77-8153 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-77-8154         TCGA-77-8156         TCGA-77-A5FZ 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-77-A5G3         TCGA-77-A5GB         TCGA-77-A5GH 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-96-8169         TCGA-96-8170         TCGA-96-A4JK 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-96-A4JL         TCGA-98-7454         TCGA-98-8020 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-LA-A446         TCGA-MF-A522         TCGA-NC-A5HE 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
[1] "hr=" "1.4"
D20V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  10Q GAIN MUTATED         0        6        7        0         7         7
  10Q GAIN WILD-TYPE       1       62      126        1        43        64
                    vv
clus                 STAGE IIIA STAGE IIIB STAGE IV
  10Q GAIN MUTATED            6          0        0
  10Q GAIN WILD-TYPE         48         20        5
D20V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  10Q GAIN MUTATED     6  23   5   0
  10Q GAIN WILD-TYPE  87 227  39  19
D20V4, multiclass
    clus
vv   10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  T1                6                 87
  T2               23                227
  T3                5                 39
  T4                0                 19
                    vv
clus                  N0  N1  N2  N3
  10Q GAIN MUTATED    19  12   2   0
  10Q GAIN WILD-TYPE 234  97  32   5
D20V5, multiclass
    clus
vv   10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  N0               19                234
  N1               12                 97
  N2                2                 32
  N3                0                  5
                    vv
clus                  M0  M1  MX
  10Q GAIN MUTATED    29   0   4
  10Q GAIN WILD-TYPE 319   5  43
D20V6, multiclass
    clus
vv   10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  M0               29                319
  M1                0                  5
  MX                4                 43
D20V7, binary
                    cls
clus                   0   1
  10Q GAIN MUTATED     6  28
  10Q GAIN WILD-TYPE  95 277
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10Q GAIN MUTATED      6   28
  10Q GAIN WILD-TYPE   95  277
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  FEMALE                6                 95
  MALE                 28                277
D20V8, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  10Q GAIN MUTATED                                       1
  10Q GAIN WILD-TYPE                                    11
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  10Q GAIN MUTATED                                        0
  10Q GAIN WILD-TYPE                                      6
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  10Q GAIN MUTATED                                         0
  10Q GAIN WILD-TYPE                                       1
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  10Q GAIN MUTATED                                                            33
  10Q GAIN WILD-TYPE                                                         354
D20V9, multiclass
                                                             clus
vv                                                            10Q GAIN MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      1
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                     0
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                    0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               33
                                                             clus
vv                                                            10Q GAIN WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       11
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                       6
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                      1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                354
D20V10, binary
                    cls
clus                   0   1
  10Q GAIN MUTATED     1  33
  10Q GAIN WILD-TYPE  11 361
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10Q GAIN MUTATED      1   33
  10Q GAIN WILD-TYPE   11  361
     clus
vv    10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  NO                 1                 11
  YES               33                361
D20V11, continuous
D20V12, continuous
                    vv
clus                  R0  R1  R2  RX
  10Q GAIN MUTATED    29   0   0   0
  10Q GAIN WILD-TYPE 301   8   4  18
D20V13, multiclass
    clus
vv   10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  R0               29                301
  R1                0                  8
  R2                0                  4
  RX                0                 18

Clustering(21) Variable = 11P GAIN MUTATION ANALYSIS
D21V1, survival
                    sevent
clus2                  0   1
  11P GAIN MUTATED    35  24
  11P GAIN WILD-TYPE 204 114
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                59                318 
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                24                114 
$`11P GAIN MUTATED`
TCGA-18-3407 TCGA-18-3410 TCGA-21-1070 TCGA-21-1072 TCGA-21-1079 TCGA-21-5783 
        4.47         4.80       119.54        99.16        31.69        88.08 
TCGA-22-1012 TCGA-22-4591 TCGA-22-4594 TCGA-22-4595 TCGA-22-5491 TCGA-33-4582 
       14.10        20.45        48.33        24.13        56.32       103.53 
TCGA-33-4583 TCGA-34-5239 TCGA-39-5027 TCGA-39-5029 TCGA-39-5034 TCGA-39-5036 
      141.34        23.24        60.76        24.33        36.39        35.64 
TCGA-43-2578 TCGA-43-5668 TCGA-43-5670 TCGA-43-6771 TCGA-43-A474 TCGA-46-6026 
       22.49        11.47        18.05         5.42        11.61        13.87 
TCGA-52-7809 TCGA-52-7810 TCGA-56-1622 TCGA-56-6545 TCGA-56-7730 TCGA-56-A49D 
        5.42        30.31        28.93         2.04         0.20         0.99 
TCGA-56-A4BX TCGA-60-2719 TCGA-60-2722 TCGA-66-2734 TCGA-66-2744 TCGA-66-2765 
        1.51        42.61        29.85        43.10         0.99         2.01 
TCGA-66-2766 TCGA-66-2770 TCGA-66-2777 TCGA-66-2785 TCGA-66-2791 TCGA-68-7755 
        1.02        23.01         2.01         1.94         5.03         2.73 
TCGA-77-6842 TCGA-77-6845 TCGA-77-7138 TCGA-77-7142 TCGA-77-7463 TCGA-77-8007 
       29.56        23.28        11.18        42.25        46.78         6.51 
TCGA-77-8139 TCGA-77-A5G3 TCGA-77-A5GB TCGA-85-6560 TCGA-85-8276 TCGA-90-7767 
      104.09       117.57        30.81         0.36         0.43         2.93 
TCGA-90-A4EE TCGA-92-8064 TCGA-94-7943 TCGA-96-8169 TCGA-96-A4JK 
       10.88         5.26        11.70         6.18         8.98 

$`11P GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3408 TCGA-18-3409 TCGA-18-3411 TCGA-18-3412 TCGA-18-3414 
       12.16        81.07        79.46        46.52        11.34        13.02 
TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 
       59.51        28.34        24.92         1.61        43.76         6.15 
TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1071 TCGA-21-1075 
        2.79        90.51         3.02        27.16        46.88        70.13 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1080 TCGA-21-1081 TCGA-21-1082 
       60.89        34.78        15.55       122.43         9.30       119.80 
TCGA-21-1083 TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-21-A5DI 
        8.78        31.63        41.69        33.93        10.82        32.19 
TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 
       19.99         7.33        14.93         4.31        64.21         1.74 
TCGA-22-1016 TCGA-22-1017 TCGA-22-4593 TCGA-22-4596 TCGA-22-4599 TCGA-22-4601 
       27.02        48.82        35.08         0.56        38.17        34.75 
TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 
       13.12        32.02        19.30         9.53        11.77        31.73 
TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 
       64.90        63.52        14.60        44.22         0.79        54.28 
TCGA-22-5480 TCGA-22-5481 TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 
       71.34        79.20        11.74        18.84        30.08        62.86 
TCGA-22-5492 TCGA-22-A5C4 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 
       16.60         0.95         7.63       114.05        97.94        43.10 
TCGA-33-4566 TCGA-33-4586 TCGA-33-4587 TCGA-33-4589 TCGA-33-6737 TCGA-33-6738 
      173.79        14.07        54.44        10.98        19.76        26.99 
TCGA-34-2596 TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 
        2.63        61.61        31.50        28.96        32.84        31.23 
TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5240 TCGA-34-5241 
       50.24        67.79        56.38         9.04        12.00        14.07 
TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 
       30.94        18.12         4.96         1.08         3.95         0.43 
TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 
        0.39         6.54         8.09         7.46         7.82         6.81 
TCGA-37-4141 TCGA-37-5819 TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 
        0.39         3.39        47.80        74.07        44.71        68.58 
TCGA-39-5022 TCGA-39-5024 TCGA-39-5028 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 
       55.17        70.03         1.71         1.94        27.35        15.58 
TCGA-39-5037 TCGA-39-5039 TCGA-39-5040 TCGA-43-2576 TCGA-43-2581 TCGA-43-3394 
       35.70        17.88        17.06        40.21        38.66        27.02 
TCGA-43-3920 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6773 TCGA-43-7656 
       33.07        12.36        24.89        10.19         3.78         6.97 
TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 TCGA-43-8118 TCGA-43-A475 
        1.58        66.51         6.64         6.35         2.93         9.73 
TCGA-43-A56V TCGA-46-3768 TCGA-46-6025 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 
        5.06         9.96        10.65         0.39         0.39        29.95 
TCGA-52-7622 TCGA-52-7811 TCGA-52-7812 TCGA-56-5897 TCGA-56-5898 TCGA-56-6546 
       17.79         8.75        27.45         0.10        18.25         1.02 
TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 
        0.99         0.43         0.99         1.45         1.32         0.85 
TCGA-56-7822 TCGA-56-8503 TCGA-56-8504 TCGA-56-8622 TCGA-56-8624 TCGA-56-8625 
        0.03         1.35         5.82         1.78         1.18         2.07 
TCGA-56-8626 TCGA-56-8628 TCGA-56-8629 TCGA-56-A4BY TCGA-56-A4ZJ TCGA-56-A4ZK 
        0.56         0.53         1.12         0.99         1.02         0.13 
TCGA-56-A5DS TCGA-58-8386 TCGA-58-8387 TCGA-58-8388 TCGA-58-8390 TCGA-58-8391 
        0.26         0.03        13.25        12.43        29.95        71.24 
TCGA-58-8392 TCGA-58-8393 TCGA-58-A46J TCGA-58-A46K TCGA-58-A46L TCGA-58-A46M 
       16.47        34.78        64.87        34.36        36.59        23.24 
TCGA-58-A46N TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 
       17.72        21.07         3.58        12.23        10.22        96.82 
TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 
       37.94        92.71        21.70        80.42        49.48        66.51 
TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 
       41.39         9.01        56.91        50.33        35.34        48.49 
TCGA-60-2720 TCGA-60-2721 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 
        3.16        32.28        35.90        23.57        26.79        11.77 
TCGA-66-2727 TCGA-66-2737 TCGA-66-2742 TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 
       16.96         2.01        21.07         1.02         2.01         0.92 
TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2767 
        0.99         0.99        20.98        25.02         0.99         2.01 
TCGA-66-2768 TCGA-66-2769 TCGA-66-2771 TCGA-66-2773 TCGA-66-2778 TCGA-66-2780 
        2.01         7.07        19.00         3.02        19.00        12.03 
TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 
        3.98        12.00        24.95        25.97        40.01        22.98 
TCGA-66-2789 TCGA-66-2790 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 
        4.04        22.98        30.02        10.06        54.08         4.01 
TCGA-66-2800 TCGA-68-7756 TCGA-68-7757 TCGA-68-8250 TCGA-68-8251 TCGA-77-6843 
       49.05         6.64         6.94         8.02         3.12        73.08 
TCGA-77-6844 TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 TCGA-77-7335 TCGA-77-7337 
       75.09        89.95        20.78         0.49        70.09       106.95 
TCGA-77-7338 TCGA-77-7465 TCGA-77-8008 TCGA-77-8009 TCGA-77-8128 TCGA-77-8130 
        0.16        15.75        86.76        53.95        37.81        82.92 
TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 TCGA-77-8140 TCGA-77-8143 
       12.59        53.92        39.09        17.69        11.54        26.40 
TCGA-77-8144 TCGA-77-8145 TCGA-77-8148 TCGA-77-8150 TCGA-77-8153 TCGA-77-8154 
       27.39         6.97         9.63        54.41        55.33        35.90 
TCGA-77-8156 TCGA-77-A5FZ TCGA-77-A5GH TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 
        0.33       126.18        23.44         0.79         1.12         0.59 
TCGA-85-7697 TCGA-85-7698 TCGA-85-7699 TCGA-85-7843 TCGA-85-7844 TCGA-85-7950 
        0.33         1.61         0.03         1.15         1.25         1.97 
TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 
        0.85         1.97         0.53        16.77        14.07         1.18 
TCGA-85-8277 TCGA-85-8287 TCGA-85-8288 TCGA-85-8350 TCGA-85-8351 TCGA-85-8352 
        0.36         1.45         1.78         1.97         1.81         2.20 
TCGA-85-8353 TCGA-85-8354 TCGA-85-8355 TCGA-85-8479 TCGA-85-8481 TCGA-85-8580 
        1.78         2.01         0.66         0.72         0.66        14.60 
TCGA-85-8582 TCGA-85-8664 TCGA-85-8666 TCGA-85-A4CL TCGA-85-A4QR TCGA-85-A50M 
       13.91         0.10        15.58         0.46         0.82         0.62 
TCGA-85-A513 TCGA-85-A53L TCGA-90-6837 TCGA-90-7766 TCGA-90-7769 TCGA-90-7964 
        0.79         0.43        24.89         9.50        11.77        14.07 
TCGA-90-A4ED TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 TCGA-92-8065 TCGA-94-7033 
        8.02         2.70         3.48         4.01         2.27         2.86 
TCGA-94-7557 TCGA-96-7544 TCGA-96-7545 TCGA-96-8170 TCGA-96-A4JL TCGA-98-7454 
        0.16        39.88        44.15         6.90         6.02         8.42 
TCGA-98-8020 TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 TCGA-J1-A4AH TCGA-L3-A4E7 
        2.73        13.58         7.33        10.13         7.30         1.15 
TCGA-L3-A524 TCGA-LA-A446 TCGA-MF-A522 TCGA-NC-A5HE TCGA-NC-A5HG TCGA-NC-A5HI 
       14.76         1.18         3.02        56.61        50.86        37.32 

  11P GAIN MUTATED 11P GAIN WILD-TYPE 
              0.20               0.03 
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
            141.34             173.79 
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
             18.05              13.07 
[1] "0.2 - 141.3 (18.1)" "0.0 - 173.8 (13.1)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-22-A5C4         TCGA-33-4532         TCGA-33-4533 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-33-4538         TCGA-33-4547         TCGA-33-4566 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-33-4582         TCGA-33-4583         TCGA-33-4586 
  "11P GAIN MUTATED"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-33-4587         TCGA-33-4589         TCGA-33-6737 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-33-6738         TCGA-34-2596         TCGA-34-2600 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-34-2604         TCGA-34-2605         TCGA-34-2608 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-34-2609         TCGA-34-5231         TCGA-34-5232 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-34-5234         TCGA-34-5236         TCGA-34-5239 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-34-5240         TCGA-34-5241         TCGA-34-5927 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-34-5928         TCGA-34-5929         TCGA-34-7107 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-3792 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4132 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-37-4133         TCGA-37-4135         TCGA-37-4141 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-37-5819         TCGA-39-5011         TCGA-39-5016 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-39-5019         TCGA-39-5021         TCGA-39-5022 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-39-5024         TCGA-39-5027         TCGA-39-5028 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-39-5029         TCGA-39-5030         TCGA-39-5031 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-39-5034         TCGA-39-5035         TCGA-39-5036 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-39-5037         TCGA-39-5039         TCGA-39-5040 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-43-8118 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-43-A474         TCGA-43-A475         TCGA-43-A56V 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-46-3768         TCGA-46-6025         TCGA-46-6026 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-51-4079         TCGA-51-4080         TCGA-51-4081 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-52-7622         TCGA-52-7809         TCGA-52-7810 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED"   "11P GAIN MUTATED" 
        TCGA-52-7811         TCGA-52-7812         TCGA-56-1622 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-56-5897         TCGA-56-5898         TCGA-56-6545 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-56-6546         TCGA-56-7221         TCGA-56-7222 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-56-7223         TCGA-56-7579         TCGA-56-7580 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-56-7582         TCGA-56-7730         TCGA-56-7822 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-56-8503         TCGA-56-8504         TCGA-56-8622 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-56-8624         TCGA-56-8625         TCGA-56-8626 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-56-8628         TCGA-56-8629         TCGA-56-A49D 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-56-A4BX         TCGA-56-A4BY         TCGA-56-A4ZJ 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-56-A4ZK         TCGA-56-A5DS         TCGA-58-8386 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-58-8387         TCGA-58-8388         TCGA-58-8390 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-58-8391         TCGA-58-8392         TCGA-58-8393 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-58-A46J         TCGA-58-A46K         TCGA-58-A46L 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-58-A46M         TCGA-58-A46N         TCGA-60-2695 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-60-2696         TCGA-60-2697         TCGA-60-2698 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-60-2703         TCGA-60-2704         TCGA-60-2706 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2756 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED"   "11P GAIN MUTATED" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2770         TCGA-66-2771         TCGA-66-2773 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2785         TCGA-66-2786         TCGA-66-2787 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-68-7755         TCGA-68-7756         TCGA-68-7757 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-68-8250         TCGA-68-8251         TCGA-77-6842 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-77-6843         TCGA-77-6844         TCGA-77-6845 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-77-7138         TCGA-77-7139         TCGA-77-7140 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-77-7141         TCGA-77-7142         TCGA-77-7335 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-77-7337         TCGA-77-7338         TCGA-77-7463 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-77-7465         TCGA-77-8007         TCGA-77-8008 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-77-8009         TCGA-77-8128         TCGA-77-8130 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-77-8131         TCGA-77-8133         TCGA-77-8136 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-77-8138         TCGA-77-8139         TCGA-77-8140 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-77-8143         TCGA-77-8144         TCGA-77-8145 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-77-8148         TCGA-77-8150         TCGA-77-8153 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-77-8154         TCGA-77-8156         TCGA-77-A5FZ 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-77-A5G3         TCGA-77-A5GB         TCGA-77-A5GH 
  "11P GAIN MUTATED"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-96-8169         TCGA-96-8170         TCGA-96-A4JK 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-96-A4JL         TCGA-98-7454         TCGA-98-8020 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-LA-A446         TCGA-MF-A522         TCGA-NC-A5HE 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-22-A5C4         TCGA-33-4532         TCGA-33-4533 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-33-4538         TCGA-33-4547         TCGA-33-4566 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-33-4582         TCGA-33-4583         TCGA-33-4586 
  "11P GAIN MUTATED"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-33-4587         TCGA-33-4589         TCGA-33-6737 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-33-6738         TCGA-34-2596         TCGA-34-2600 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-34-2604         TCGA-34-2605         TCGA-34-2608 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-34-2609         TCGA-34-5231         TCGA-34-5232 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-34-5234         TCGA-34-5236         TCGA-34-5239 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-34-5240         TCGA-34-5241         TCGA-34-5927 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-34-5928         TCGA-34-5929         TCGA-34-7107 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-3792 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4132 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-37-4133         TCGA-37-4135         TCGA-37-4141 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-37-5819         TCGA-39-5011         TCGA-39-5016 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-39-5019         TCGA-39-5021         TCGA-39-5022 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-39-5024         TCGA-39-5027         TCGA-39-5028 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-39-5029         TCGA-39-5030         TCGA-39-5031 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-39-5034         TCGA-39-5035         TCGA-39-5036 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-39-5037         TCGA-39-5039         TCGA-39-5040 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-43-8118 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-43-A474         TCGA-43-A475         TCGA-43-A56V 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-46-3768         TCGA-46-6025         TCGA-46-6026 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-51-4079         TCGA-51-4080         TCGA-51-4081 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-52-7622         TCGA-52-7809         TCGA-52-7810 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED"   "11P GAIN MUTATED" 
        TCGA-52-7811         TCGA-52-7812         TCGA-56-1622 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-56-5897         TCGA-56-5898         TCGA-56-6545 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-56-6546         TCGA-56-7221         TCGA-56-7222 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-56-7223         TCGA-56-7579         TCGA-56-7580 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-56-7582         TCGA-56-7730         TCGA-56-7822 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-56-8503         TCGA-56-8504         TCGA-56-8622 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-56-8624         TCGA-56-8625         TCGA-56-8626 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-56-8628         TCGA-56-8629         TCGA-56-A49D 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-56-A4BX         TCGA-56-A4BY         TCGA-56-A4ZJ 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-56-A4ZK         TCGA-56-A5DS         TCGA-58-8386 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-58-8387         TCGA-58-8388         TCGA-58-8390 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-58-8391         TCGA-58-8392         TCGA-58-8393 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-58-A46J         TCGA-58-A46K         TCGA-58-A46L 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-58-A46M         TCGA-58-A46N         TCGA-60-2695 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-60-2696         TCGA-60-2697         TCGA-60-2698 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-60-2703         TCGA-60-2704         TCGA-60-2706 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2756 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED"   "11P GAIN MUTATED" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2770         TCGA-66-2771         TCGA-66-2773 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2785         TCGA-66-2786         TCGA-66-2787 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-68-7755         TCGA-68-7756         TCGA-68-7757 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-68-8250         TCGA-68-8251         TCGA-77-6842 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-77-6843         TCGA-77-6844         TCGA-77-6845 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-77-7138         TCGA-77-7139         TCGA-77-7140 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-77-7141         TCGA-77-7142         TCGA-77-7335 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-77-7337         TCGA-77-7338         TCGA-77-7463 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-77-7465         TCGA-77-8007         TCGA-77-8008 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-77-8009         TCGA-77-8128         TCGA-77-8130 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-77-8131         TCGA-77-8133         TCGA-77-8136 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-77-8138         TCGA-77-8139         TCGA-77-8140 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-77-8143         TCGA-77-8144         TCGA-77-8145 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-77-8148         TCGA-77-8150         TCGA-77-8153 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-77-8154         TCGA-77-8156         TCGA-77-A5FZ 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-77-A5G3         TCGA-77-A5GB         TCGA-77-A5GH 
  "11P GAIN MUTATED"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-96-8169         TCGA-96-8170         TCGA-96-A4JK 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-96-A4JL         TCGA-98-7454         TCGA-98-8020 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-LA-A446         TCGA-MF-A522         TCGA-NC-A5HE 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-22-A5C4         TCGA-33-4532         TCGA-33-4533 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-33-4538         TCGA-33-4547         TCGA-33-4566 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-33-4582         TCGA-33-4583         TCGA-33-4586 
  "11P GAIN MUTATED"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-33-4587         TCGA-33-4589         TCGA-33-6737 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-33-6738         TCGA-34-2596         TCGA-34-2600 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-34-2604         TCGA-34-2605         TCGA-34-2608 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-34-2609         TCGA-34-5231         TCGA-34-5232 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-34-5234         TCGA-34-5236         TCGA-34-5239 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-34-5240         TCGA-34-5241         TCGA-34-5927 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-34-5928         TCGA-34-5929         TCGA-34-7107 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-3792 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4132 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-37-4133         TCGA-37-4135         TCGA-37-4141 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-37-5819         TCGA-39-5011         TCGA-39-5016 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-39-5019         TCGA-39-5021         TCGA-39-5022 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-39-5024         TCGA-39-5027         TCGA-39-5028 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-39-5029         TCGA-39-5030         TCGA-39-5031 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-39-5034         TCGA-39-5035         TCGA-39-5036 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-39-5037         TCGA-39-5039         TCGA-39-5040 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-43-8118 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-43-A474         TCGA-43-A475         TCGA-43-A56V 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-46-3768         TCGA-46-6025         TCGA-46-6026 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-51-4079         TCGA-51-4080         TCGA-51-4081 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-52-7622         TCGA-52-7809         TCGA-52-7810 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED"   "11P GAIN MUTATED" 
        TCGA-52-7811         TCGA-52-7812         TCGA-56-1622 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-56-5897         TCGA-56-5898         TCGA-56-6545 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-56-6546         TCGA-56-7221         TCGA-56-7222 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-56-7223         TCGA-56-7579         TCGA-56-7580 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-56-7582         TCGA-56-7730         TCGA-56-7822 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-56-8503         TCGA-56-8504         TCGA-56-8622 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-56-8624         TCGA-56-8625         TCGA-56-8626 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-56-8628         TCGA-56-8629         TCGA-56-A49D 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-56-A4BX         TCGA-56-A4BY         TCGA-56-A4ZJ 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-56-A4ZK         TCGA-56-A5DS         TCGA-58-8386 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-58-8387         TCGA-58-8388         TCGA-58-8390 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-58-8391         TCGA-58-8392         TCGA-58-8393 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-58-A46J         TCGA-58-A46K         TCGA-58-A46L 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-58-A46M         TCGA-58-A46N         TCGA-60-2695 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-60-2696         TCGA-60-2697         TCGA-60-2698 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-60-2703         TCGA-60-2704         TCGA-60-2706 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2756 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED"   "11P GAIN MUTATED" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2770         TCGA-66-2771         TCGA-66-2773 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2785         TCGA-66-2786         TCGA-66-2787 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-68-7755         TCGA-68-7756         TCGA-68-7757 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-68-8250         TCGA-68-8251         TCGA-77-6842 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-77-6843         TCGA-77-6844         TCGA-77-6845 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-77-7138         TCGA-77-7139         TCGA-77-7140 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-77-7141         TCGA-77-7142         TCGA-77-7335 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-77-7337         TCGA-77-7338         TCGA-77-7463 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-77-7465         TCGA-77-8007         TCGA-77-8008 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-77-8009         TCGA-77-8128         TCGA-77-8130 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-77-8131         TCGA-77-8133         TCGA-77-8136 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-77-8138         TCGA-77-8139         TCGA-77-8140 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-77-8143         TCGA-77-8144         TCGA-77-8145 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-77-8148         TCGA-77-8150         TCGA-77-8153 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-77-8154         TCGA-77-8156         TCGA-77-A5FZ 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-77-A5G3         TCGA-77-A5GB         TCGA-77-A5GH 
  "11P GAIN MUTATED"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-96-8169         TCGA-96-8170         TCGA-96-A4JK 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-96-A4JL         TCGA-98-7454         TCGA-98-8020 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-LA-A446         TCGA-MF-A522         TCGA-NC-A5HE 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D21V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  11P GAIN MUTATED         0        7       21        0        10        11
  11P GAIN WILD-TYPE       1       61      112        1        40        60
                    vv
clus                 STAGE IIIA STAGE IIIB STAGE IV
  11P GAIN MUTATED           10          2        0
  11P GAIN WILD-TYPE         44         18        5
D21V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  11P GAIN MUTATED    12  37  11   1
  11P GAIN WILD-TYPE  81 213  33  18
D21V4, multiclass
    clus
vv   11P GAIN MUTATED 11P GAIN WILD-TYPE
  T1               12                 81
  T2               37                213
  T3               11                 33
  T4                1                 18
                    vv
clus                  N0  N1  N2  N3
  11P GAIN MUTATED    39  13   6   1
  11P GAIN WILD-TYPE 214  96  28   4
D21V5, multiclass
    clus
vv   11P GAIN MUTATED 11P GAIN WILD-TYPE
  N0               39                214
  N1               13                 96
  N2                6                 28
  N3                1                  4
                    vv
clus                  M0  M1  MX
  11P GAIN MUTATED    53   0   7
  11P GAIN WILD-TYPE 295   5  40
D21V6, multiclass
    clus
vv   11P GAIN MUTATED 11P GAIN WILD-TYPE
  M0               53                295
  M1                0                  5
  MX                7                 40
D21V7, binary
                    cls
clus                   0   1
  11P GAIN MUTATED    12  49
  11P GAIN WILD-TYPE  89 256
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11P GAIN MUTATED     12   49
  11P GAIN WILD-TYPE   89  256
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  FEMALE               12                 89
  MALE                 49                256
D21V8, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  11P GAIN MUTATED                                       1
  11P GAIN WILD-TYPE                                    11
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  11P GAIN MUTATED                                        1
  11P GAIN WILD-TYPE                                      5
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  11P GAIN MUTATED                                         0
  11P GAIN WILD-TYPE                                       1
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  11P GAIN MUTATED                                                            59
  11P GAIN WILD-TYPE                                                         328
D21V9, multiclass
                                                             clus
vv                                                            11P GAIN MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      1
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                     1
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                    0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               59
                                                             clus
vv                                                            11P GAIN WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       11
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                       5
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                      1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                328
D21V10, binary
                    cls
clus                   0   1
  11P GAIN MUTATED     2  59
  11P GAIN WILD-TYPE  10 335
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11P GAIN MUTATED      2   59
  11P GAIN WILD-TYPE   10  335
     clus
vv    11P GAIN MUTATED 11P GAIN WILD-TYPE
  NO                 2                 10
  YES               59                335
D21V11, continuous
D21V12, continuous
                    vv
clus                  R0  R1  R2  RX
  11P GAIN MUTATED    48   1   1   3
  11P GAIN WILD-TYPE 282   7   3  15
D21V13, multiclass
    clus
vv   11P GAIN MUTATED 11P GAIN WILD-TYPE
  R0               48                282
  R1                1                  7
  R2                1                  3
  RX                3                 15

Clustering(22) Variable = 11Q GAIN MUTATION ANALYSIS
D22V1, survival
                    sevent
clus2                  0   1
  11Q GAIN MUTATED    44  24
  11Q GAIN WILD-TYPE 195 114
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                68                309 
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                24                114 
$`11Q GAIN MUTATED`
TCGA-18-3410 TCGA-21-1070 TCGA-21-1072 TCGA-21-1079 TCGA-21-5786 TCGA-22-1012 
        4.80       119.54        99.16        31.69        33.93        14.10 
TCGA-22-4591 TCGA-22-4594 TCGA-22-4595 TCGA-22-5491 TCGA-33-4582 TCGA-33-4583 
       20.45        48.33        24.13        56.32       103.53       141.34 
TCGA-34-5231 TCGA-34-5239 TCGA-37-4132 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 
       50.24        23.24         7.46         6.81         0.39         3.39 
TCGA-39-5011 TCGA-39-5029 TCGA-39-5034 TCGA-39-5036 TCGA-43-2578 TCGA-43-5668 
       47.80        24.33        36.39        35.64        22.49        11.47 
TCGA-43-5670 TCGA-43-6143 TCGA-43-6771 TCGA-52-7810 TCGA-56-1622 TCGA-56-5898 
       18.05        12.36         5.42        30.31        28.93        18.25 
TCGA-56-6545 TCGA-56-7730 TCGA-56-A49D TCGA-60-2719 TCGA-60-2720 TCGA-66-2734 
        2.04         0.20         0.99        42.61         3.16        43.10 
TCGA-66-2737 TCGA-66-2742 TCGA-66-2759 TCGA-66-2763 TCGA-66-2777 TCGA-66-2781 
        2.01        21.07        25.02         0.99         2.01         3.98 
TCGA-66-2786 TCGA-66-2789 TCGA-66-2791 TCGA-68-7755 TCGA-77-6842 TCGA-77-6845 
       25.97         4.04         5.03         2.73        29.56        23.28 
TCGA-77-7138 TCGA-77-7141 TCGA-77-7142 TCGA-77-7337 TCGA-77-7463 TCGA-77-8007 
       11.18         0.49        42.25       106.95        46.78         6.51 
TCGA-77-8139 TCGA-77-8154 TCGA-77-A5GB TCGA-85-6560 TCGA-85-7843 TCGA-85-7950 
      104.09        35.90        30.81         0.36         1.15         1.97 
TCGA-85-8276 TCGA-85-8353 TCGA-85-A53L TCGA-90-7767 TCGA-90-A4EE TCGA-92-8064 
        0.43         1.78         0.43         2.93        10.88         5.26 
TCGA-94-7943 TCGA-96-A4JK 
       11.70         8.98 

$`11Q GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07        79.46        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       13.02        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1071 
        6.15         2.79        90.51         3.02        27.16        46.88 
TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1080 TCGA-21-1081 
       70.13        60.89        34.78        15.55       122.43         9.30 
TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 TCGA-21-5787 
      119.80         8.78        31.63        88.08        41.69        10.82 
TCGA-21-A5DI TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 
       32.19        19.99         7.33        14.93         4.31        64.21 
TCGA-22-1011 TCGA-22-1016 TCGA-22-1017 TCGA-22-4593 TCGA-22-4596 TCGA-22-4599 
        1.74        27.02        48.82        35.08         0.56        38.17 
TCGA-22-4601 TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 
       34.75        13.12        32.02        19.30         9.53        11.77 
TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 
       31.73        64.90        63.52        14.60        44.22         0.79 
TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 
       54.28        71.34        79.20        11.74        18.84        30.08 
TCGA-22-5489 TCGA-22-5492 TCGA-22-A5C4 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       62.86        16.60         0.95         7.63       114.05        97.94 
TCGA-33-4547 TCGA-33-4566 TCGA-33-4586 TCGA-33-4587 TCGA-33-4589 TCGA-33-6737 
       43.10       173.79        14.07        54.44        10.98        19.76 
TCGA-33-6738 TCGA-34-2596 TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 
       26.99         2.63        61.61        31.50        28.96        32.84 
TCGA-34-2609 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5240 TCGA-34-5241 
       31.23        67.79        56.38         9.04        12.00        14.07 
TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 
       30.94        18.12         4.96         1.08         3.95         0.43 
TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 TCGA-37-4133 TCGA-39-5016 TCGA-39-5019 
        0.39         6.54         8.09         7.82        74.07        44.71 
TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5030 
       68.58        55.17        70.03        60.76         1.71         1.94 
TCGA-39-5031 TCGA-39-5035 TCGA-39-5037 TCGA-39-5039 TCGA-39-5040 TCGA-43-2576 
       27.35        15.58        35.70        17.88        17.06        40.21 
TCGA-43-2581 TCGA-43-3394 TCGA-43-3920 TCGA-43-6647 TCGA-43-6770 TCGA-43-6773 
       38.66        27.02        33.07        24.89        10.19         3.78 
TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 TCGA-43-8118 
        6.97         1.58        66.51         6.64         6.35         2.93 
TCGA-43-A474 TCGA-43-A475 TCGA-43-A56V TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 
       11.61         9.73         5.06         9.96        10.65        13.87 
TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 TCGA-52-7811 
        0.39         0.39        29.95        17.79         5.42         8.75 
TCGA-52-7812 TCGA-56-5897 TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 
       27.45         0.10         1.02         0.99         0.43         0.99 
TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 TCGA-56-7822 TCGA-56-8503 TCGA-56-8504 
        1.45         1.32         0.85         0.03         1.35         5.82 
TCGA-56-8622 TCGA-56-8624 TCGA-56-8625 TCGA-56-8626 TCGA-56-8628 TCGA-56-8629 
        1.78         1.18         2.07         0.56         0.53         1.12 
TCGA-56-A4BX TCGA-56-A4BY TCGA-56-A4ZJ TCGA-56-A4ZK TCGA-56-A5DS TCGA-58-8386 
        1.51         0.99         1.02         0.13         0.26         0.03 
TCGA-58-8387 TCGA-58-8388 TCGA-58-8390 TCGA-58-8391 TCGA-58-8392 TCGA-58-8393 
       13.25        12.43        29.95        71.24        16.47        34.78 
TCGA-58-A46J TCGA-58-A46K TCGA-58-A46L TCGA-58-A46M TCGA-58-A46N TCGA-60-2695 
       64.87        34.36        36.59        23.24        17.72        21.07 
TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 
        3.58        12.23        10.22        96.82        37.94        92.71 
TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 
       21.70        80.42        49.48        66.51        41.39         9.01 
TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 TCGA-60-2721 TCGA-60-2722 
       56.91        50.33        35.34        48.49        32.28        29.85 
TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2744 
       35.90        23.57        26.79        11.77        16.96         0.99 
TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 
        1.02         2.01         0.92         0.99         0.99        20.98 
TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 TCGA-66-2770 
        2.01         1.02         2.01         2.01         7.07        23.01 
TCGA-66-2771 TCGA-66-2773 TCGA-66-2778 TCGA-66-2780 TCGA-66-2782 TCGA-66-2783 
       19.00         3.02        19.00        12.03        12.00        24.95 
TCGA-66-2785 TCGA-66-2787 TCGA-66-2788 TCGA-66-2790 TCGA-66-2792 TCGA-66-2793 
        1.94        40.01        22.98        22.98        30.02        10.06 
TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-68-7756 TCGA-68-7757 TCGA-68-8250 
       54.08         4.01        49.05         6.64         6.94         8.02 
TCGA-68-8251 TCGA-77-6843 TCGA-77-6844 TCGA-77-7139 TCGA-77-7140 TCGA-77-7335 
        3.12        73.08        75.09        89.95        20.78        70.09 
TCGA-77-7338 TCGA-77-7465 TCGA-77-8008 TCGA-77-8009 TCGA-77-8128 TCGA-77-8130 
        0.16        15.75        86.76        53.95        37.81        82.92 
TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 TCGA-77-8140 TCGA-77-8143 
       12.59        53.92        39.09        17.69        11.54        26.40 
TCGA-77-8144 TCGA-77-8145 TCGA-77-8148 TCGA-77-8150 TCGA-77-8153 TCGA-77-8156 
       27.39         6.97         9.63        54.41        55.33         0.33 
TCGA-77-A5FZ TCGA-77-A5G3 TCGA-77-A5GH TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 
      126.18       117.57        23.44         0.79         1.12         0.59 
TCGA-85-7697 TCGA-85-7698 TCGA-85-7699 TCGA-85-7844 TCGA-85-8048 TCGA-85-8049 
        0.33         1.61         0.03         1.25         0.85         1.97 
TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 TCGA-85-8277 TCGA-85-8287 
        0.53        16.77        14.07         1.18         0.36         1.45 
TCGA-85-8288 TCGA-85-8350 TCGA-85-8351 TCGA-85-8352 TCGA-85-8354 TCGA-85-8355 
        1.78         1.97         1.81         2.20         2.01         0.66 
TCGA-85-8479 TCGA-85-8481 TCGA-85-8580 TCGA-85-8582 TCGA-85-8664 TCGA-85-8666 
        0.72         0.66        14.60        13.91         0.10        15.58 
TCGA-85-A4CL TCGA-85-A4QR TCGA-85-A50M TCGA-85-A513 TCGA-90-6837 TCGA-90-7766 
        0.46         0.82         0.62         0.79        24.89         9.50 
TCGA-90-7769 TCGA-90-7964 TCGA-90-A4ED TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 
       11.77        14.07         8.02         2.70         3.48         4.01 
TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 TCGA-96-7544 TCGA-96-7545 TCGA-96-8169 
        2.27         2.86         0.16        39.88        44.15         6.18 
TCGA-96-8170 TCGA-96-A4JL TCGA-98-7454 TCGA-98-8020 TCGA-98-8021 TCGA-98-8022 
        6.90         6.02         8.42         2.73        13.58         7.33 
TCGA-98-8023 TCGA-J1-A4AH TCGA-L3-A4E7 TCGA-L3-A524 TCGA-LA-A446 TCGA-MF-A522 
       10.13         7.30         1.15        14.76         1.18         3.02 
TCGA-NC-A5HE TCGA-NC-A5HG TCGA-NC-A5HI 
       56.61        50.86        37.32 

  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
              0.20               0.03 
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
            141.34             173.79 
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
            16.075             13.250 
[1] "0.2 - 141.3 (16.1)" "0.0 - 173.8 (13.2)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-22-A5C4         TCGA-33-4532         TCGA-33-4533 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-33-4538         TCGA-33-4547         TCGA-33-4566 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-33-4582         TCGA-33-4583         TCGA-33-4586 
  "11Q GAIN MUTATED"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-33-4587         TCGA-33-4589         TCGA-33-6737 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-33-6738         TCGA-34-2596         TCGA-34-2600 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-34-2604         TCGA-34-2605         TCGA-34-2608 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-34-2609         TCGA-34-5231         TCGA-34-5232 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-34-5234         TCGA-34-5236         TCGA-34-5239 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-34-5240         TCGA-34-5241         TCGA-34-5927 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-34-5928         TCGA-34-5929         TCGA-34-7107 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-3792 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4132 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-37-4133         TCGA-37-4135         TCGA-37-4141 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED"   "11Q GAIN MUTATED" 
        TCGA-37-5819         TCGA-39-5011         TCGA-39-5016 
  "11Q GAIN MUTATED"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-39-5019         TCGA-39-5021         TCGA-39-5022 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-39-5024         TCGA-39-5027         TCGA-39-5028 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-39-5029         TCGA-39-5030         TCGA-39-5031 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-39-5034         TCGA-39-5035         TCGA-39-5036 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-39-5037         TCGA-39-5039         TCGA-39-5040 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
  "11Q GAIN MUTATED"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-43-8118 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-43-A474         TCGA-43-A475         TCGA-43-A56V 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-46-3768         TCGA-46-6025         TCGA-46-6026 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-51-4079         TCGA-51-4080         TCGA-51-4081 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-52-7622         TCGA-52-7809         TCGA-52-7810 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-52-7811         TCGA-52-7812         TCGA-56-1622 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-56-5897         TCGA-56-5898         TCGA-56-6545 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED"   "11Q GAIN MUTATED" 
        TCGA-56-6546         TCGA-56-7221         TCGA-56-7222 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-56-7223         TCGA-56-7579         TCGA-56-7580 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-56-7582         TCGA-56-7730         TCGA-56-7822 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-56-8503         TCGA-56-8504         TCGA-56-8622 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-56-8624         TCGA-56-8625         TCGA-56-8626 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-56-8628         TCGA-56-8629         TCGA-56-A49D 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-56-A4BX         TCGA-56-A4BY         TCGA-56-A4ZJ 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-56-A4ZK         TCGA-56-A5DS         TCGA-58-8386 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-58-8387         TCGA-58-8388         TCGA-58-8390 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-58-8391         TCGA-58-8392         TCGA-58-8393 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-58-A46J         TCGA-58-A46K         TCGA-58-A46L 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-58-A46M         TCGA-58-A46N         TCGA-60-2695 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-60-2696         TCGA-60-2697         TCGA-60-2698 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-60-2703         TCGA-60-2704         TCGA-60-2706 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED"   "11Q GAIN MUTATED" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED"   "11Q GAIN MUTATED" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2756 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-66-2770         TCGA-66-2771         TCGA-66-2773 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-66-2785         TCGA-66-2786         TCGA-66-2787 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-68-7755         TCGA-68-7756         TCGA-68-7757 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-68-8250         TCGA-68-8251         TCGA-77-6842 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-77-6843         TCGA-77-6844         TCGA-77-6845 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-77-7138         TCGA-77-7139         TCGA-77-7140 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-77-7141         TCGA-77-7142         TCGA-77-7335 
  "11Q GAIN MUTATED"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-77-7337         TCGA-77-7338         TCGA-77-7463 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-77-7465         TCGA-77-8007         TCGA-77-8008 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-77-8009         TCGA-77-8128         TCGA-77-8130 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-77-8131         TCGA-77-8133         TCGA-77-8136 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-77-8138         TCGA-77-8139         TCGA-77-8140 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-77-8143         TCGA-77-8144         TCGA-77-8145 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-77-8148         TCGA-77-8150         TCGA-77-8153 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-77-8154         TCGA-77-8156         TCGA-77-A5FZ 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-77-A5G3         TCGA-77-A5GB         TCGA-77-A5GH 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-96-8169         TCGA-96-8170         TCGA-96-A4JK 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-96-A4JL         TCGA-98-7454         TCGA-98-8020 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-LA-A446         TCGA-MF-A522         TCGA-NC-A5HE 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-22-A5C4         TCGA-33-4532         TCGA-33-4533 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-33-4538         TCGA-33-4547         TCGA-33-4566 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-33-4582         TCGA-33-4583         TCGA-33-4586 
  "11Q GAIN MUTATED"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-33-4587         TCGA-33-4589         TCGA-33-6737 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-33-6738         TCGA-34-2596         TCGA-34-2600 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-34-2604         TCGA-34-2605         TCGA-34-2608 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-34-2609         TCGA-34-5231         TCGA-34-5232 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-34-5234         TCGA-34-5236         TCGA-34-5239 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-34-5240         TCGA-34-5241         TCGA-34-5927 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-34-5928         TCGA-34-5929         TCGA-34-7107 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-3792 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4132 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-37-4133         TCGA-37-4135         TCGA-37-4141 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED"   "11Q GAIN MUTATED" 
        TCGA-37-5819         TCGA-39-5011         TCGA-39-5016 
  "11Q GAIN MUTATED"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-39-5019         TCGA-39-5021         TCGA-39-5022 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-39-5024         TCGA-39-5027         TCGA-39-5028 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-39-5029         TCGA-39-5030         TCGA-39-5031 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-39-5034         TCGA-39-5035         TCGA-39-5036 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-39-5037         TCGA-39-5039         TCGA-39-5040 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
  "11Q GAIN MUTATED"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-43-8118 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-43-A474         TCGA-43-A475         TCGA-43-A56V 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-46-3768         TCGA-46-6025         TCGA-46-6026 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-51-4079         TCGA-51-4080         TCGA-51-4081 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-52-7622         TCGA-52-7809         TCGA-52-7810 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-52-7811         TCGA-52-7812         TCGA-56-1622 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-56-5897         TCGA-56-5898         TCGA-56-6545 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED"   "11Q GAIN MUTATED" 
        TCGA-56-6546         TCGA-56-7221         TCGA-56-7222 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-56-7223         TCGA-56-7579         TCGA-56-7580 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-56-7582         TCGA-56-7730         TCGA-56-7822 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-56-8503         TCGA-56-8504         TCGA-56-8622 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-56-8624         TCGA-56-8625         TCGA-56-8626 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-56-8628         TCGA-56-8629         TCGA-56-A49D 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-56-A4BX         TCGA-56-A4BY         TCGA-56-A4ZJ 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-56-A4ZK         TCGA-56-A5DS         TCGA-58-8386 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-58-8387         TCGA-58-8388         TCGA-58-8390 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-58-8391         TCGA-58-8392         TCGA-58-8393 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-58-A46J         TCGA-58-A46K         TCGA-58-A46L 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-58-A46M         TCGA-58-A46N         TCGA-60-2695 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-60-2696         TCGA-60-2697         TCGA-60-2698 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-60-2703         TCGA-60-2704         TCGA-60-2706 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED"   "11Q GAIN MUTATED" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED"   "11Q GAIN MUTATED" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2756 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-66-2770         TCGA-66-2771         TCGA-66-2773 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-66-2785         TCGA-66-2786         TCGA-66-2787 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-68-7755         TCGA-68-7756         TCGA-68-7757 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-68-8250         TCGA-68-8251         TCGA-77-6842 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-77-6843         TCGA-77-6844         TCGA-77-6845 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-77-7138         TCGA-77-7139         TCGA-77-7140 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-77-7141         TCGA-77-7142         TCGA-77-7335 
  "11Q GAIN MUTATED"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-77-7337         TCGA-77-7338         TCGA-77-7463 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-77-7465         TCGA-77-8007         TCGA-77-8008 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-77-8009         TCGA-77-8128         TCGA-77-8130 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-77-8131         TCGA-77-8133         TCGA-77-8136 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-77-8138         TCGA-77-8139         TCGA-77-8140 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-77-8143         TCGA-77-8144         TCGA-77-8145 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-77-8148         TCGA-77-8150         TCGA-77-8153 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-77-8154         TCGA-77-8156         TCGA-77-A5FZ 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-77-A5G3         TCGA-77-A5GB         TCGA-77-A5GH 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-96-8169         TCGA-96-8170         TCGA-96-A4JK 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-96-A4JL         TCGA-98-7454         TCGA-98-8020 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-LA-A446         TCGA-MF-A522         TCGA-NC-A5HE 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-22-A5C4         TCGA-33-4532         TCGA-33-4533 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-33-4538         TCGA-33-4547         TCGA-33-4566 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-33-4582         TCGA-33-4583         TCGA-33-4586 
  "11Q GAIN MUTATED"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-33-4587         TCGA-33-4589         TCGA-33-6737 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-33-6738         TCGA-34-2596         TCGA-34-2600 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-34-2604         TCGA-34-2605         TCGA-34-2608 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-34-2609         TCGA-34-5231         TCGA-34-5232 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-34-5234         TCGA-34-5236         TCGA-34-5239 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-34-5240         TCGA-34-5241         TCGA-34-5927 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-34-5928         TCGA-34-5929         TCGA-34-7107 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-3792 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4132 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-37-4133         TCGA-37-4135         TCGA-37-4141 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED"   "11Q GAIN MUTATED" 
        TCGA-37-5819         TCGA-39-5011         TCGA-39-5016 
  "11Q GAIN MUTATED"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-39-5019         TCGA-39-5021         TCGA-39-5022 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-39-5024         TCGA-39-5027         TCGA-39-5028 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-39-5029         TCGA-39-5030         TCGA-39-5031 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-39-5034         TCGA-39-5035         TCGA-39-5036 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-39-5037         TCGA-39-5039         TCGA-39-5040 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
  "11Q GAIN MUTATED"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-43-8118 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-43-A474         TCGA-43-A475         TCGA-43-A56V 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-46-3768         TCGA-46-6025         TCGA-46-6026 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-51-4079         TCGA-51-4080         TCGA-51-4081 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-52-7622         TCGA-52-7809         TCGA-52-7810 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-52-7811         TCGA-52-7812         TCGA-56-1622 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-56-5897         TCGA-56-5898         TCGA-56-6545 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED"   "11Q GAIN MUTATED" 
        TCGA-56-6546         TCGA-56-7221         TCGA-56-7222 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-56-7223         TCGA-56-7579         TCGA-56-7580 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-56-7582         TCGA-56-7730         TCGA-56-7822 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-56-8503         TCGA-56-8504         TCGA-56-8622 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-56-8624         TCGA-56-8625         TCGA-56-8626 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-56-8628         TCGA-56-8629         TCGA-56-A49D 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-56-A4BX         TCGA-56-A4BY         TCGA-56-A4ZJ 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-56-A4ZK         TCGA-56-A5DS         TCGA-58-8386 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-58-8387         TCGA-58-8388         TCGA-58-8390 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-58-8391         TCGA-58-8392         TCGA-58-8393 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-58-A46J         TCGA-58-A46K         TCGA-58-A46L 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-58-A46M         TCGA-58-A46N         TCGA-60-2695 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-60-2696         TCGA-60-2697         TCGA-60-2698 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-60-2703         TCGA-60-2704         TCGA-60-2706 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED"   "11Q GAIN MUTATED" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED"   "11Q GAIN MUTATED" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2756 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-66-2770         TCGA-66-2771         TCGA-66-2773 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-66-2785         TCGA-66-2786         TCGA-66-2787 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-68-7755         TCGA-68-7756         TCGA-68-7757 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-68-8250         TCGA-68-8251         TCGA-77-6842 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-77-6843         TCGA-77-6844         TCGA-77-6845 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-77-7138         TCGA-77-7139         TCGA-77-7140 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-77-7141         TCGA-77-7142         TCGA-77-7335 
  "11Q GAIN MUTATED"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-77-7337         TCGA-77-7338         TCGA-77-7463 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-77-7465         TCGA-77-8007         TCGA-77-8008 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-77-8009         TCGA-77-8128         TCGA-77-8130 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-77-8131         TCGA-77-8133         TCGA-77-8136 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-77-8138         TCGA-77-8139         TCGA-77-8140 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-77-8143         TCGA-77-8144         TCGA-77-8145 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-77-8148         TCGA-77-8150         TCGA-77-8153 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-77-8154         TCGA-77-8156         TCGA-77-A5FZ 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-77-A5G3         TCGA-77-A5GB         TCGA-77-A5GH 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-96-8169         TCGA-96-8170         TCGA-96-A4JK 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-96-A4JL         TCGA-98-7454         TCGA-98-8020 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-LA-A446         TCGA-MF-A522         TCGA-NC-A5HE 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D22V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  11Q GAIN MUTATED         0       13       21        0        10        12
  11Q GAIN WILD-TYPE       1       55      112        1        40        59
                    vv
clus                 STAGE IIIA STAGE IIIB STAGE IV
  11Q GAIN MUTATED           12          4        2
  11Q GAIN WILD-TYPE         42         16        3
D22V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  11Q GAIN MUTATED    19  41  13   1
  11Q GAIN WILD-TYPE  74 209  31  18
D22V4, multiclass
    clus
vv   11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  T1               19                 74
  T2               41                209
  T3               13                 31
  T4                1                 18
                    vv
clus                  N0  N1  N2  N3
  11Q GAIN MUTATED    47  16   7   2
  11Q GAIN WILD-TYPE 206  93  27   3
D22V5, multiclass
    clus
vv   11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  N0               47                206
  N1               16                 93
  N2                7                 27
  N3                2                  3
                    vv
clus                  M0  M1  MX
  11Q GAIN MUTATED    64   2   7
  11Q GAIN WILD-TYPE 284   3  40
D22V6, multiclass
    clus
vv   11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  M0               64                284
  M1                2                  3
  MX                7                 40
D22V7, binary
                    cls
clus                   0   1
  11Q GAIN MUTATED    19  55
  11Q GAIN WILD-TYPE  82 250
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11Q GAIN MUTATED     19   55
  11Q GAIN WILD-TYPE   82  250
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  FEMALE               19                 82
  MALE                 55                250
D22V8, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  11Q GAIN MUTATED                                       1
  11Q GAIN WILD-TYPE                                    11
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  11Q GAIN MUTATED                                        1
  11Q GAIN WILD-TYPE                                      5
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  11Q GAIN MUTATED                                         0
  11Q GAIN WILD-TYPE                                       1
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  11Q GAIN MUTATED                                                            72
  11Q GAIN WILD-TYPE                                                         315
D22V9, multiclass
                                                             clus
vv                                                            11Q GAIN MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      1
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                     1
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                    0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               72
                                                             clus
vv                                                            11Q GAIN WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       11
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                       5
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                      1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                315
D22V10, binary
                    cls
clus                   0   1
  11Q GAIN MUTATED     1  73
  11Q GAIN WILD-TYPE  11 321
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11Q GAIN MUTATED      1   73
  11Q GAIN WILD-TYPE   11  321
     clus
vv    11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  NO                 1                 11
  YES               73                321
D22V11, continuous
D22V12, continuous
                    vv
clus                  R0  R1  R2  RX
  11Q GAIN MUTATED    60   1   0   5
  11Q GAIN WILD-TYPE 270   7   4  13
D22V13, multiclass
    clus
vv   11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  R0               60                270
  R1                1                  7
  R2                0                  4
  RX                5                 13

Clustering(23) Variable = 12P GAIN MUTATION ANALYSIS
D23V1, survival
                    sevent
clus2                  0   1
  12P GAIN MUTATED   106  65
  12P GAIN WILD-TYPE 133  73
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
               171                206 
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
                65                 73 
$`12P GAIN MUTATED`
TCGA-18-3410 TCGA-18-3412 TCGA-18-3417 TCGA-18-3421 TCGA-18-4083 TCGA-18-4721 
        4.80        11.34        24.92        43.76         6.15        90.51 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1072 TCGA-21-1077 TCGA-21-1079 TCGA-21-1083 
      119.54        46.88        99.16        34.78        31.69         8.78 
TCGA-21-5782 TCGA-21-5786 TCGA-21-5787 TCGA-21-A5DI TCGA-22-1012 TCGA-22-1017 
       31.63        33.93        10.82        32.19        14.10        48.82 
TCGA-22-4591 TCGA-22-4593 TCGA-22-4594 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 
       20.45        35.08        48.33        24.13        38.17        34.75 
TCGA-22-4604 TCGA-22-5471 TCGA-22-5473 TCGA-22-5477 TCGA-22-5480 TCGA-22-5482 
       13.12        31.73        63.52        44.22        71.34        11.74 
TCGA-22-5489 TCGA-22-5491 TCGA-33-4532 TCGA-33-4538 TCGA-33-4566 TCGA-33-4582 
       62.86        56.32         7.63        97.94       173.79       103.53 
TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-33-6738 TCGA-34-2596 TCGA-34-2605 
      141.34        14.07        19.76        26.99         2.63        28.96 
TCGA-34-2609 TCGA-34-5231 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5928 
       31.23        50.24        23.24        12.00        14.07        18.12 
TCGA-34-7107 TCGA-37-3792 TCGA-39-5019 TCGA-39-5021 TCGA-39-5034 TCGA-39-5035 
        1.08         0.39        44.71        68.58        36.39        15.58 
TCGA-39-5036 TCGA-39-5037 TCGA-39-5040 TCGA-43-3394 TCGA-43-3920 TCGA-43-5670 
       35.64        35.70        17.06        27.02        33.07        18.05 
TCGA-43-6770 TCGA-43-6771 TCGA-43-8115 TCGA-43-8116 TCGA-43-A474 TCGA-43-A475 
       10.19         5.42         6.64         6.35        11.61         9.73 
TCGA-43-A56V TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4081 
        5.06         9.96        10.65        13.87         0.39        29.95 
TCGA-52-7809 TCGA-52-7810 TCGA-52-7811 TCGA-52-7812 TCGA-56-6545 TCGA-56-6546 
        5.42        30.31         8.75        27.45         2.04         1.02 
TCGA-56-7222 TCGA-56-7223 TCGA-56-7582 TCGA-56-7730 TCGA-56-7822 TCGA-56-8504 
        0.43         0.99         0.85         0.20         0.03         5.82 
TCGA-56-8629 TCGA-56-A4BX TCGA-58-8387 TCGA-58-A46K TCGA-60-2695 TCGA-60-2698 
        1.12         1.51        13.25        34.36        21.07        10.22 
TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 TCGA-60-2708 TCGA-60-2711 TCGA-60-2712 
       96.82        37.94        92.71        80.42        41.39         9.01 
TCGA-60-2719 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 
       42.61        35.90        23.57        26.79        11.77        16.96 
TCGA-66-2744 TCGA-66-2754 TCGA-66-2756 TCGA-66-2758 TCGA-66-2766 TCGA-66-2767 
        0.99         2.01         0.99        20.98         1.02         2.01 
TCGA-66-2769 TCGA-66-2777 TCGA-66-2781 TCGA-66-2785 TCGA-66-2787 TCGA-66-2793 
        7.07         2.01         3.98         1.94        40.01        10.06 
TCGA-66-2794 TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 TCGA-68-8250 TCGA-68-8251 
       54.08        49.05         2.73         6.64         8.02         3.12 
TCGA-77-6842 TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 TCGA-77-7337 TCGA-77-7463 
       29.56        20.78         0.49        42.25       106.95        46.78 
TCGA-77-7465 TCGA-77-8009 TCGA-77-8128 TCGA-77-8130 TCGA-77-8133 TCGA-77-8138 
       15.75        53.95        37.81        82.92        53.92        17.69 
TCGA-77-8143 TCGA-77-8148 TCGA-77-8156 TCGA-77-A5G3 TCGA-85-6560 TCGA-85-7696 
       26.40         9.63         0.33       117.57         0.36         0.59 
TCGA-85-7697 TCGA-85-7699 TCGA-85-7950 TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 
        0.33         0.03         1.97         0.85         1.97         0.53 
TCGA-85-8070 TCGA-85-8276 TCGA-85-8277 TCGA-85-8287 TCGA-85-8350 TCGA-85-8352 
       16.77         0.43         0.36         1.45         1.97         2.20 
TCGA-85-8354 TCGA-85-8481 TCGA-85-8664 TCGA-85-8666 TCGA-85-A4QR TCGA-85-A513 
        2.01         0.66         0.10        15.58         0.82         0.79 
TCGA-85-A53L TCGA-90-7767 TCGA-90-7769 TCGA-90-A4EE TCGA-92-7340 TCGA-92-7341 
        0.43         2.93        11.77        10.88         2.70         3.48 
TCGA-92-8064 TCGA-94-7557 TCGA-94-7943 TCGA-96-A4JK TCGA-J1-A4AH TCGA-L3-A524 
        5.26         0.16        11.70         8.98         7.30        14.76 
TCGA-LA-A446 TCGA-MF-A522 TCGA-NC-A5HG 
        1.18         3.02        50.86 

$`12P GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3411 TCGA-18-3414 
       12.16         4.47        81.07        79.46        46.52        13.02 
TCGA-18-3415 TCGA-18-3416 TCGA-18-3419 TCGA-18-4086 TCGA-18-5592 TCGA-18-5595 
       59.51        28.34         1.61         2.79         3.02        27.16 
TCGA-21-1075 TCGA-21-1076 TCGA-21-1078 TCGA-21-1080 TCGA-21-1081 TCGA-21-1082 
       70.13        60.89        15.55       122.43         9.30       119.80 
TCGA-21-5783 TCGA-21-5784 TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 
       88.08        41.69        19.99         7.33        14.93         4.31 
TCGA-22-1005 TCGA-22-1011 TCGA-22-1016 TCGA-22-4596 TCGA-22-4605 TCGA-22-4607 
       64.21         1.74        27.02         0.56        32.02        19.30 
TCGA-22-4609 TCGA-22-4613 TCGA-22-5472 TCGA-22-5474 TCGA-22-5478 TCGA-22-5479 
        9.53        11.77        64.90        14.60         0.79        54.28 
TCGA-22-5481 TCGA-22-5483 TCGA-22-5485 TCGA-22-5492 TCGA-22-A5C4 TCGA-33-4533 
       79.20        18.84        30.08        16.60         0.95       114.05 
TCGA-33-4547 TCGA-33-4587 TCGA-33-4589 TCGA-34-2600 TCGA-34-2604 TCGA-34-2608 
       43.10        54.44        10.98        61.61        31.50        32.84 
TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5927 TCGA-34-5929 TCGA-37-3783 
       67.79        56.38         9.04        30.94         4.96         3.95 
TCGA-37-3789 TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 
        0.43         6.54         8.09         7.46         7.82         6.81 
TCGA-37-4141 TCGA-37-5819 TCGA-39-5011 TCGA-39-5016 TCGA-39-5022 TCGA-39-5024 
        0.39         3.39        47.80        74.07        55.17        70.03 
TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5039 
       60.76         1.71        24.33         1.94        27.35        17.88 
TCGA-43-2576 TCGA-43-2578 TCGA-43-2581 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 
       40.21        22.49        38.66        11.47        12.36        24.89 
TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 TCGA-43-8118 TCGA-51-4080 
        3.78         6.97         1.58        66.51         2.93         0.39 
TCGA-52-7622 TCGA-56-1622 TCGA-56-5897 TCGA-56-5898 TCGA-56-7221 TCGA-56-7579 
       17.79        28.93         0.10        18.25         0.99         1.45 
TCGA-56-7580 TCGA-56-8503 TCGA-56-8622 TCGA-56-8624 TCGA-56-8625 TCGA-56-8626 
        1.32         1.35         1.78         1.18         2.07         0.56 
TCGA-56-8628 TCGA-56-A49D TCGA-56-A4BY TCGA-56-A4ZJ TCGA-56-A4ZK TCGA-56-A5DS 
        0.53         0.99         0.99         1.02         0.13         0.26 
TCGA-58-8386 TCGA-58-8388 TCGA-58-8390 TCGA-58-8391 TCGA-58-8392 TCGA-58-8393 
        0.03        12.43        29.95        71.24        16.47        34.78 
TCGA-58-A46J TCGA-58-A46L TCGA-58-A46M TCGA-58-A46N TCGA-60-2696 TCGA-60-2697 
       64.87        36.59        23.24        17.72         3.58        12.23 
TCGA-60-2707 TCGA-60-2709 TCGA-60-2710 TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 
       21.70        49.48        66.51        56.91        50.33        35.34 
TCGA-60-2716 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-66-2734 TCGA-66-2737 
       48.49         3.16        32.28        29.85        43.10         2.01 
TCGA-66-2742 TCGA-66-2753 TCGA-66-2755 TCGA-66-2757 TCGA-66-2759 TCGA-66-2763 
       21.07         1.02         0.92         0.99        25.02         0.99 
TCGA-66-2765 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2778 
        2.01         2.01        23.01        19.00         3.02        19.00 
TCGA-66-2780 TCGA-66-2782 TCGA-66-2783 TCGA-66-2786 TCGA-66-2788 TCGA-66-2789 
       12.03        12.00        24.95        25.97        22.98         4.04 
TCGA-66-2790 TCGA-66-2791 TCGA-66-2792 TCGA-66-2795 TCGA-68-7757 TCGA-77-6843 
       22.98         5.03        30.02         4.01         6.94        73.08 
TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 TCGA-77-7335 TCGA-77-7338 
       75.09        23.28        11.18        89.95        70.09         0.16 
TCGA-77-8007 TCGA-77-8008 TCGA-77-8131 TCGA-77-8136 TCGA-77-8139 TCGA-77-8140 
        6.51        86.76        12.59        39.09       104.09        11.54 
TCGA-77-8144 TCGA-77-8145 TCGA-77-8150 TCGA-77-8153 TCGA-77-8154 TCGA-77-A5FZ 
       27.39         6.97        54.41        55.33        35.90       126.18 
TCGA-77-A5GB TCGA-77-A5GH TCGA-85-6561 TCGA-85-6798 TCGA-85-7698 TCGA-85-7843 
       30.81        23.44         0.79         1.12         1.61         1.15 
TCGA-85-7844 TCGA-85-8071 TCGA-85-8072 TCGA-85-8288 TCGA-85-8351 TCGA-85-8353 
        1.25        14.07         1.18         1.78         1.81         1.78 
TCGA-85-8355 TCGA-85-8479 TCGA-85-8580 TCGA-85-8582 TCGA-85-A4CL TCGA-85-A50M 
        0.66         0.72        14.60        13.91         0.46         0.62 
TCGA-90-6837 TCGA-90-7766 TCGA-90-7964 TCGA-90-A4ED TCGA-92-8063 TCGA-92-8065 
       24.89         9.50        14.07         8.02         4.01         2.27 
TCGA-94-7033 TCGA-96-7544 TCGA-96-7545 TCGA-96-8169 TCGA-96-8170 TCGA-96-A4JL 
        2.86        39.88        44.15         6.18         6.90         6.02 
TCGA-98-7454 TCGA-98-8020 TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 TCGA-L3-A4E7 
        8.42         2.73        13.58         7.33        10.13         1.15 
TCGA-NC-A5HE TCGA-NC-A5HI 
       56.61        37.32 

  12P GAIN MUTATED 12P GAIN WILD-TYPE 
              0.03               0.03 
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
            173.79             126.18 
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
            13.250             13.745 
[1] "0.0 - 173.8 (13.2)" "0.0 - 126.2 (13.7)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-22-A5C4         TCGA-33-4532         TCGA-33-4533 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-33-4538         TCGA-33-4547         TCGA-33-4566 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-33-4582         TCGA-33-4583         TCGA-33-4586 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-33-4587         TCGA-33-4589         TCGA-33-6737 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-33-6738         TCGA-34-2596         TCGA-34-2600 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-34-2604         TCGA-34-2605         TCGA-34-2608 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-34-2609         TCGA-34-5231         TCGA-34-5232 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-34-5234         TCGA-34-5236         TCGA-34-5239 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-34-5240         TCGA-34-5241         TCGA-34-5927 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-34-5928         TCGA-34-5929         TCGA-34-7107 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-3792 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4132 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-37-4133         TCGA-37-4135         TCGA-37-4141 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-37-5819         TCGA-39-5011         TCGA-39-5016 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-39-5019         TCGA-39-5021         TCGA-39-5022 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-39-5024         TCGA-39-5027         TCGA-39-5028 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-39-5029         TCGA-39-5030         TCGA-39-5031 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-39-5034         TCGA-39-5035         TCGA-39-5036 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-39-5037         TCGA-39-5039         TCGA-39-5040 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-43-8118 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-43-A474         TCGA-43-A475         TCGA-43-A56V 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-46-3768         TCGA-46-6025         TCGA-46-6026 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-51-4079         TCGA-51-4080         TCGA-51-4081 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-52-7622         TCGA-52-7809         TCGA-52-7810 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-52-7811         TCGA-52-7812         TCGA-56-1622 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-56-5897         TCGA-56-5898         TCGA-56-6545 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-56-6546         TCGA-56-7221         TCGA-56-7222 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-56-7223         TCGA-56-7579         TCGA-56-7580 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-56-7582         TCGA-56-7730         TCGA-56-7822 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-56-8503         TCGA-56-8504         TCGA-56-8622 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-56-8624         TCGA-56-8625         TCGA-56-8626 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-56-8628         TCGA-56-8629         TCGA-56-A49D 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-56-A4BX         TCGA-56-A4BY         TCGA-56-A4ZJ 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-56-A4ZK         TCGA-56-A5DS         TCGA-58-8386 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-58-8387         TCGA-58-8388         TCGA-58-8390 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-58-8391         TCGA-58-8392         TCGA-58-8393 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-58-A46J         TCGA-58-A46K         TCGA-58-A46L 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-58-A46M         TCGA-58-A46N         TCGA-60-2695 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-60-2696         TCGA-60-2697         TCGA-60-2698 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-60-2703         TCGA-60-2704         TCGA-60-2706 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2756 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-66-2770         TCGA-66-2771         TCGA-66-2773 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-66-2785         TCGA-66-2786         TCGA-66-2787 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-68-7755         TCGA-68-7756         TCGA-68-7757 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-68-8250         TCGA-68-8251         TCGA-77-6842 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-77-6843         TCGA-77-6844         TCGA-77-6845 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-77-7138         TCGA-77-7139         TCGA-77-7140 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-77-7141         TCGA-77-7142         TCGA-77-7335 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-77-7337         TCGA-77-7338         TCGA-77-7463 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-77-7465         TCGA-77-8007         TCGA-77-8008 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-77-8009         TCGA-77-8128         TCGA-77-8130 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-77-8131         TCGA-77-8133         TCGA-77-8136 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-77-8138         TCGA-77-8139         TCGA-77-8140 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-77-8143         TCGA-77-8144         TCGA-77-8145 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-77-8148         TCGA-77-8150         TCGA-77-8153 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-77-8154         TCGA-77-8156         TCGA-77-A5FZ 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-77-A5G3         TCGA-77-A5GB         TCGA-77-A5GH 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-96-8169         TCGA-96-8170         TCGA-96-A4JK 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-96-A4JL         TCGA-98-7454         TCGA-98-8020 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-LA-A446         TCGA-MF-A522         TCGA-NC-A5HE 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-22-A5C4         TCGA-33-4532         TCGA-33-4533 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-33-4538         TCGA-33-4547         TCGA-33-4566 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-33-4582         TCGA-33-4583         TCGA-33-4586 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-33-4587         TCGA-33-4589         TCGA-33-6737 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-33-6738         TCGA-34-2596         TCGA-34-2600 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-34-2604         TCGA-34-2605         TCGA-34-2608 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-34-2609         TCGA-34-5231         TCGA-34-5232 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-34-5234         TCGA-34-5236         TCGA-34-5239 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-34-5240         TCGA-34-5241         TCGA-34-5927 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-34-5928         TCGA-34-5929         TCGA-34-7107 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-3792 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4132 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-37-4133         TCGA-37-4135         TCGA-37-4141 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-37-5819         TCGA-39-5011         TCGA-39-5016 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-39-5019         TCGA-39-5021         TCGA-39-5022 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-39-5024         TCGA-39-5027         TCGA-39-5028 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-39-5029         TCGA-39-5030         TCGA-39-5031 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-39-5034         TCGA-39-5035         TCGA-39-5036 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-39-5037         TCGA-39-5039         TCGA-39-5040 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-43-8118 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-43-A474         TCGA-43-A475         TCGA-43-A56V 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-46-3768         TCGA-46-6025         TCGA-46-6026 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-51-4079         TCGA-51-4080         TCGA-51-4081 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-52-7622         TCGA-52-7809         TCGA-52-7810 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-52-7811         TCGA-52-7812         TCGA-56-1622 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-56-5897         TCGA-56-5898         TCGA-56-6545 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-56-6546         TCGA-56-7221         TCGA-56-7222 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-56-7223         TCGA-56-7579         TCGA-56-7580 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-56-7582         TCGA-56-7730         TCGA-56-7822 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-56-8503         TCGA-56-8504         TCGA-56-8622 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-56-8624         TCGA-56-8625         TCGA-56-8626 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-56-8628         TCGA-56-8629         TCGA-56-A49D 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-56-A4BX         TCGA-56-A4BY         TCGA-56-A4ZJ 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-56-A4ZK         TCGA-56-A5DS         TCGA-58-8386 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-58-8387         TCGA-58-8388         TCGA-58-8390 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-58-8391         TCGA-58-8392         TCGA-58-8393 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-58-A46J         TCGA-58-A46K         TCGA-58-A46L 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-58-A46M         TCGA-58-A46N         TCGA-60-2695 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-60-2696         TCGA-60-2697         TCGA-60-2698 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-60-2703         TCGA-60-2704         TCGA-60-2706 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2756 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-66-2770         TCGA-66-2771         TCGA-66-2773 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-66-2785         TCGA-66-2786         TCGA-66-2787 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-68-7755         TCGA-68-7756         TCGA-68-7757 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-68-8250         TCGA-68-8251         TCGA-77-6842 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-77-6843         TCGA-77-6844         TCGA-77-6845 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-77-7138         TCGA-77-7139         TCGA-77-7140 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-77-7141         TCGA-77-7142         TCGA-77-7335 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-77-7337         TCGA-77-7338         TCGA-77-7463 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-77-7465         TCGA-77-8007         TCGA-77-8008 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-77-8009         TCGA-77-8128         TCGA-77-8130 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-77-8131         TCGA-77-8133         TCGA-77-8136 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-77-8138         TCGA-77-8139         TCGA-77-8140 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-77-8143         TCGA-77-8144         TCGA-77-8145 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-77-8148         TCGA-77-8150         TCGA-77-8153 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-77-8154         TCGA-77-8156         TCGA-77-A5FZ 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-77-A5G3         TCGA-77-A5GB         TCGA-77-A5GH 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-96-8169         TCGA-96-8170         TCGA-96-A4JK 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-96-A4JL         TCGA-98-7454         TCGA-98-8020 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-LA-A446         TCGA-MF-A522         TCGA-NC-A5HE 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-22-A5C4         TCGA-33-4532         TCGA-33-4533 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-33-4538         TCGA-33-4547         TCGA-33-4566 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-33-4582         TCGA-33-4583         TCGA-33-4586 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-33-4587         TCGA-33-4589         TCGA-33-6737 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-33-6738         TCGA-34-2596         TCGA-34-2600 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-34-2604         TCGA-34-2605         TCGA-34-2608 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-34-2609         TCGA-34-5231         TCGA-34-5232 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-34-5234         TCGA-34-5236         TCGA-34-5239 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-34-5240         TCGA-34-5241         TCGA-34-5927 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-34-5928         TCGA-34-5929         TCGA-34-7107 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-3792 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4132 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-37-4133         TCGA-37-4135         TCGA-37-4141 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-37-5819         TCGA-39-5011         TCGA-39-5016 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-39-5019         TCGA-39-5021         TCGA-39-5022 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-39-5024         TCGA-39-5027         TCGA-39-5028 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-39-5029         TCGA-39-5030         TCGA-39-5031 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-39-5034         TCGA-39-5035         TCGA-39-5036 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-39-5037         TCGA-39-5039         TCGA-39-5040 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-43-8118 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-43-A474         TCGA-43-A475         TCGA-43-A56V 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-46-3768         TCGA-46-6025         TCGA-46-6026 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-51-4079         TCGA-51-4080         TCGA-51-4081 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-52-7622         TCGA-52-7809         TCGA-52-7810 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-52-7811         TCGA-52-7812         TCGA-56-1622 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-56-5897         TCGA-56-5898         TCGA-56-6545 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-56-6546         TCGA-56-7221         TCGA-56-7222 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-56-7223         TCGA-56-7579         TCGA-56-7580 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-56-7582         TCGA-56-7730         TCGA-56-7822 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-56-8503         TCGA-56-8504         TCGA-56-8622 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-56-8624         TCGA-56-8625         TCGA-56-8626 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-56-8628         TCGA-56-8629         TCGA-56-A49D 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-56-A4BX         TCGA-56-A4BY         TCGA-56-A4ZJ 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-56-A4ZK         TCGA-56-A5DS         TCGA-58-8386 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-58-8387         TCGA-58-8388         TCGA-58-8390 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-58-8391         TCGA-58-8392         TCGA-58-8393 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-58-A46J         TCGA-58-A46K         TCGA-58-A46L 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-58-A46M         TCGA-58-A46N         TCGA-60-2695 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-60-2696         TCGA-60-2697         TCGA-60-2698 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-60-2703         TCGA-60-2704         TCGA-60-2706 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2756 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-66-2770         TCGA-66-2771         TCGA-66-2773 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-66-2785         TCGA-66-2786         TCGA-66-2787 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-68-7755         TCGA-68-7756         TCGA-68-7757 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-68-8250         TCGA-68-8251         TCGA-77-6842 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-77-6843         TCGA-77-6844         TCGA-77-6845 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-77-7138         TCGA-77-7139         TCGA-77-7140 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-77-7141         TCGA-77-7142         TCGA-77-7335 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-77-7337         TCGA-77-7338         TCGA-77-7463 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-77-7465         TCGA-77-8007         TCGA-77-8008 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-77-8009         TCGA-77-8128         TCGA-77-8130 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-77-8131         TCGA-77-8133         TCGA-77-8136 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-77-8138         TCGA-77-8139         TCGA-77-8140 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-77-8143         TCGA-77-8144         TCGA-77-8145 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-77-8148         TCGA-77-8150         TCGA-77-8153 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-77-8154         TCGA-77-8156         TCGA-77-A5FZ 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-77-A5G3         TCGA-77-A5GB         TCGA-77-A5GH 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-96-8169         TCGA-96-8170         TCGA-96-A4JK 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-96-A4JL         TCGA-98-7454         TCGA-98-8020 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-LA-A446         TCGA-MF-A522         TCGA-NC-A5HE 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D23V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  12P GAIN MUTATED         1       24       56        1        26        34
  12P GAIN WILD-TYPE       0       44       77        0        24        37
                    vv
clus                 STAGE IIIA STAGE IIIB STAGE IV
  12P GAIN MUTATED           31          8        1
  12P GAIN WILD-TYPE         23         12        4
D23V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  12P GAIN MUTATED    33 117  22  11
  12P GAIN WILD-TYPE  60 133  22   8
D23V4, multiclass
    clus
vv   12P GAIN MUTATED 12P GAIN WILD-TYPE
  T1               33                 60
  T2              117                133
  T3               22                 22
  T4               11                  8
                    vv
clus                  N0  N1  N2  N3
  12P GAIN MUTATED   109  53  18   1
  12P GAIN WILD-TYPE 144  56  16   4
D23V5, multiclass
    clus
vv   12P GAIN MUTATED 12P GAIN WILD-TYPE
  N0              109                144
  N1               53                 56
  N2               18                 16
  N3                1                  4
                    vv
clus                  M0  M1  MX
  12P GAIN MUTATED   157   1  22
  12P GAIN WILD-TYPE 191   4  25
D23V6, multiclass
    clus
vv   12P GAIN MUTATED 12P GAIN WILD-TYPE
  M0              157                191
  M1                1                  4
  MX               22                 25
D23V7, binary
                    cls
clus                   0   1
  12P GAIN MUTATED    32 151
  12P GAIN WILD-TYPE  69 154
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12P GAIN MUTATED     32  151
  12P GAIN WILD-TYPE   69  154
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  FEMALE               32                 69
  MALE                151                154
D23V8, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  12P GAIN MUTATED                                       5
  12P GAIN WILD-TYPE                                     7
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  12P GAIN MUTATED                                        2
  12P GAIN WILD-TYPE                                      4
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  12P GAIN MUTATED                                         0
  12P GAIN WILD-TYPE                                       1
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  12P GAIN MUTATED                                                           176
  12P GAIN WILD-TYPE                                                         211
D23V9, multiclass
                                                             clus
vv                                                            12P GAIN MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      5
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                     2
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                    0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              176
                                                             clus
vv                                                            12P GAIN WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                        7
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                       4
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                      1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                211
D23V10, binary
                    cls
clus                   0   1
  12P GAIN MUTATED     7 176
  12P GAIN WILD-TYPE   5 218
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12P GAIN MUTATED      7  176
  12P GAIN WILD-TYPE    5  218
     clus
vv    12P GAIN MUTATED 12P GAIN WILD-TYPE
  NO                 7                  5
  YES              176                218
D23V11, continuous
D23V12, continuous
                    vv
clus                  R0  R1  R2  RX
  12P GAIN MUTATED   145   4   2   8
  12P GAIN WILD-TYPE 185   4   2  10
D23V13, multiclass
    clus
vv   12P GAIN MUTATED 12P GAIN WILD-TYPE
  R0              145                185
  R1                4                  4
  R2                2                  2
  RX                8                 10

Clustering(24) Variable = 12Q GAIN MUTATION ANALYSIS
D24V1, survival
                    sevent
clus2                  0   1
  12Q GAIN MUTATED    71  48
  12Q GAIN WILD-TYPE 168  90
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
               119                258 
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
                48                 90 
$`12Q GAIN MUTATED`
TCGA-18-3410 TCGA-18-3412 TCGA-18-3417 TCGA-18-3421 TCGA-18-4083 TCGA-18-4721 
        4.80        11.34        24.92        43.76         6.15        90.51 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1072 TCGA-21-1077 TCGA-21-1083 TCGA-21-5786 
      119.54        46.88        99.16        34.78         8.78        33.93 
TCGA-21-5787 TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 TCGA-22-4593 TCGA-22-4594 
       10.82        27.02        48.82        20.45        35.08        48.33 
TCGA-22-4601 TCGA-22-4604 TCGA-22-5471 TCGA-22-5473 TCGA-22-5480 TCGA-22-5482 
       34.75        13.12        31.73        63.52        71.34        11.74 
TCGA-22-5491 TCGA-33-4532 TCGA-33-4538 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 
       56.32         7.63        97.94       103.53       141.34        14.07 
TCGA-33-6737 TCGA-34-2596 TCGA-34-2605 TCGA-34-2609 TCGA-34-5231 TCGA-34-5239 
       19.76         2.63        28.96        31.23        50.24        23.24 
TCGA-34-7107 TCGA-37-3792 TCGA-37-4130 TCGA-37-5819 TCGA-39-5011 TCGA-39-5019 
        1.08         0.39         8.09         3.39        47.80        44.71 
TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-43-3394 TCGA-43-3920 TCGA-43-6771 
       15.58        35.64        35.70        27.02        33.07         5.42 
TCGA-43-8116 TCGA-43-A475 TCGA-46-3768 TCGA-46-6025 TCGA-51-4079 TCGA-52-7809 
        6.35         9.73         9.96        10.65         0.39         5.42 
TCGA-52-7812 TCGA-56-6546 TCGA-56-7582 TCGA-56-7822 TCGA-56-A4BX TCGA-58-A46K 
       27.45         1.02         0.85         0.03         1.51        34.36 
TCGA-60-2695 TCGA-60-2698 TCGA-60-2704 TCGA-60-2706 TCGA-60-2708 TCGA-60-2712 
       21.07        10.22        37.94        92.71        80.42         9.01 
TCGA-60-2715 TCGA-60-2719 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2754 
       35.34        42.61        23.57        26.79        11.77         2.01 
TCGA-66-2756 TCGA-66-2766 TCGA-66-2767 TCGA-66-2781 TCGA-66-2787 TCGA-66-2793 
        0.99         1.02         2.01         3.98        40.01        10.06 
TCGA-66-2794 TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 TCGA-68-8251 TCGA-77-6842 
       54.08        49.05         2.73         6.64         3.12        29.56 
TCGA-77-7140 TCGA-77-7142 TCGA-77-7465 TCGA-77-8009 TCGA-77-8128 TCGA-77-8130 
       20.78        42.25        15.75        53.95        37.81        82.92 
TCGA-77-8133 TCGA-77-8143 TCGA-77-8148 TCGA-77-8150 TCGA-77-8154 TCGA-77-A5G3 
       53.92        26.40         9.63        54.41        35.90       117.57 
TCGA-85-7950 TCGA-85-8052 TCGA-85-8070 TCGA-85-8276 TCGA-85-8277 TCGA-85-8350 
        1.97         0.53        16.77         0.43         0.36         1.97 
TCGA-85-8353 TCGA-85-8354 TCGA-85-8664 TCGA-85-A4QR TCGA-85-A513 TCGA-90-7767 
        1.78         2.01         0.10         0.82         0.79         2.93 
TCGA-90-7769 TCGA-90-A4EE TCGA-92-7340 TCGA-92-7341 TCGA-94-7557 TCGA-94-7943 
       11.77        10.88         2.70         3.48         0.16        11.70 
TCGA-98-8023 TCGA-J1-A4AH TCGA-L3-A524 TCGA-LA-A446 TCGA-NC-A5HG 
       10.13         7.30        14.76         1.18        50.86 

$`12Q GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3411 TCGA-18-3414 
       12.16         4.47        81.07        79.46        46.52        13.02 
TCGA-18-3415 TCGA-18-3416 TCGA-18-3419 TCGA-18-4086 TCGA-18-5592 TCGA-18-5595 
       59.51        28.34         1.61         2.79         3.02        27.16 
TCGA-21-1075 TCGA-21-1076 TCGA-21-1078 TCGA-21-1079 TCGA-21-1080 TCGA-21-1081 
       70.13        60.89        15.55        31.69       122.43         9.30 
TCGA-21-1082 TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 TCGA-21-A5DI TCGA-22-0940 
      119.80        31.63        88.08        41.69        32.19        19.99 
TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 
        7.33        14.93         4.31        64.21         1.74        14.10 
TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 
       24.13         0.56        38.17        32.02        19.30         9.53 
TCGA-22-4613 TCGA-22-5472 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 
       11.77        64.90        14.60        44.22         0.79        54.28 
TCGA-22-5481 TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 TCGA-22-5492 TCGA-22-A5C4 
       79.20        18.84        30.08        62.86        16.60         0.95 
TCGA-33-4533 TCGA-33-4547 TCGA-33-4566 TCGA-33-4587 TCGA-33-4589 TCGA-33-6738 
      114.05        43.10       173.79        54.44        10.98        26.99 
TCGA-34-2600 TCGA-34-2604 TCGA-34-2608 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 
       61.61        31.50        32.84        67.79        56.38         9.04 
TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 
       12.00        14.07        30.94        18.12         4.96         3.95 
TCGA-37-3789 TCGA-37-4129 TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 
        0.43         6.54         7.46         7.82         6.81         0.39 
TCGA-39-5016 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       74.07        68.58        55.17        70.03        60.76         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 TCGA-39-5039 TCGA-39-5040 
       24.33         1.94        27.35        36.39        17.88        17.06 
TCGA-43-2576 TCGA-43-2578 TCGA-43-2581 TCGA-43-5668 TCGA-43-5670 TCGA-43-6143 
       40.21        22.49        38.66        11.47        18.05        12.36 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 
       24.89        10.19         3.78         6.97         1.58        66.51 
TCGA-43-8115 TCGA-43-8118 TCGA-43-A474 TCGA-43-A56V TCGA-46-6026 TCGA-51-4080 
        6.64         2.93        11.61         5.06        13.87         0.39 
TCGA-51-4081 TCGA-52-7622 TCGA-52-7810 TCGA-52-7811 TCGA-56-1622 TCGA-56-5897 
       29.95        17.79        30.31         8.75        28.93         0.10 
TCGA-56-5898 TCGA-56-6545 TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 
       18.25         2.04         0.99         0.43         0.99         1.45 
TCGA-56-7580 TCGA-56-7730 TCGA-56-8503 TCGA-56-8504 TCGA-56-8622 TCGA-56-8624 
        1.32         0.20         1.35         5.82         1.78         1.18 
TCGA-56-8625 TCGA-56-8626 TCGA-56-8628 TCGA-56-8629 TCGA-56-A49D TCGA-56-A4BY 
        2.07         0.56         0.53         1.12         0.99         0.99 
TCGA-56-A4ZJ TCGA-56-A4ZK TCGA-56-A5DS TCGA-58-8386 TCGA-58-8387 TCGA-58-8388 
        1.02         0.13         0.26         0.03        13.25        12.43 
TCGA-58-8390 TCGA-58-8391 TCGA-58-8392 TCGA-58-8393 TCGA-58-A46J TCGA-58-A46L 
       29.95        71.24        16.47        34.78        64.87        36.59 
TCGA-58-A46M TCGA-58-A46N TCGA-60-2696 TCGA-60-2697 TCGA-60-2703 TCGA-60-2707 
       23.24        17.72         3.58        12.23        96.82        21.70 
TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2713 TCGA-60-2714 TCGA-60-2716 
       49.48        66.51        41.39        56.91        50.33        48.49 
TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-66-2727 TCGA-66-2734 
        3.16        32.28        29.85        35.90        16.96        43.10 
TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 TCGA-66-2755 TCGA-66-2757 
        2.01        21.07         0.99         1.02         0.92         0.99 
TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2768 TCGA-66-2769 
       20.98        25.02         0.99         2.01         2.01         7.07 
TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 
       23.01        19.00         3.02         2.01        19.00        12.03 
TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2788 TCGA-66-2789 
       12.00        24.95         1.94        25.97        22.98         4.04 
TCGA-66-2790 TCGA-66-2791 TCGA-66-2792 TCGA-66-2795 TCGA-68-7757 TCGA-68-8250 
       22.98         5.03        30.02         4.01         6.94         8.02 
TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 TCGA-77-7141 
       73.08        75.09        23.28        11.18        89.95         0.49 
TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 TCGA-77-8007 TCGA-77-8008 
       70.09       106.95         0.16        46.78         6.51        86.76 
TCGA-77-8131 TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 TCGA-77-8144 
       12.59        39.09        17.69       104.09        11.54        27.39 
TCGA-77-8145 TCGA-77-8153 TCGA-77-8156 TCGA-77-A5FZ TCGA-77-A5GB TCGA-77-A5GH 
        6.97        55.33         0.33       126.18        30.81        23.44 
TCGA-85-6560 TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 TCGA-85-7697 TCGA-85-7698 
        0.36         0.79         1.12         0.59         0.33         1.61 
TCGA-85-7699 TCGA-85-7843 TCGA-85-7844 TCGA-85-8048 TCGA-85-8049 TCGA-85-8071 
        0.03         1.15         1.25         0.85         1.97        14.07 
TCGA-85-8072 TCGA-85-8287 TCGA-85-8288 TCGA-85-8351 TCGA-85-8352 TCGA-85-8355 
        1.18         1.45         1.78         1.81         2.20         0.66 
TCGA-85-8479 TCGA-85-8481 TCGA-85-8580 TCGA-85-8582 TCGA-85-8666 TCGA-85-A4CL 
        0.72         0.66        14.60        13.91        15.58         0.46 
TCGA-85-A50M TCGA-85-A53L TCGA-90-6837 TCGA-90-7766 TCGA-90-7964 TCGA-90-A4ED 
        0.62         0.43        24.89         9.50        14.07         8.02 
TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 TCGA-96-7544 TCGA-96-7545 
        4.01         5.26         2.27         2.86        39.88        44.15 
TCGA-96-8169 TCGA-96-8170 TCGA-96-A4JK TCGA-96-A4JL TCGA-98-7454 TCGA-98-8020 
        6.18         6.90         8.98         6.02         8.42         2.73 
TCGA-98-8021 TCGA-98-8022 TCGA-L3-A4E7 TCGA-MF-A522 TCGA-NC-A5HE TCGA-NC-A5HI 
       13.58         7.33         1.15         3.02        56.61        37.32 

  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
              0.03               0.03 
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
            141.34             173.79 
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
            15.580             12.805 
[1] "0.0 - 141.3 (15.6)" "0.0 - 173.8 (12.8)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
  "12Q GAIN MUTATED"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
  "12Q GAIN MUTATED"   "12Q GAIN MUTATED"   "12Q GAIN MUTATED" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
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  "12Q GAIN MUTATED"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
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  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
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  "12Q GAIN MUTATED"   "12Q GAIN MUTATED"   "12Q GAIN MUTATED" 
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  "12Q GAIN MUTATED"   "12Q GAIN MUTATED"   "12Q GAIN MUTATED" 
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  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
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  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
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  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
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  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
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  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
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  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
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  "12Q GAIN MUTATED"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
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"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-3792 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4132 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-37-4133         TCGA-37-4135         TCGA-37-4141 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-37-5819         TCGA-39-5011         TCGA-39-5016 
  "12Q GAIN MUTATED"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-39-5019         TCGA-39-5021         TCGA-39-5022 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-39-5024         TCGA-39-5027         TCGA-39-5028 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-39-5029         TCGA-39-5030         TCGA-39-5031 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-39-5034         TCGA-39-5035         TCGA-39-5036 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED"   "12Q GAIN MUTATED" 
        TCGA-39-5037         TCGA-39-5039         TCGA-39-5040 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
  "12Q GAIN MUTATED"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-43-8118 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-43-A474         TCGA-43-A475         TCGA-43-A56V 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-46-3768         TCGA-46-6025         TCGA-46-6026 
  "12Q GAIN MUTATED"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-51-4079         TCGA-51-4080         TCGA-51-4081 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-52-7622         TCGA-52-7809         TCGA-52-7810 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-52-7811         TCGA-52-7812         TCGA-56-1622 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-56-5897         TCGA-56-5898         TCGA-56-6545 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-56-6546         TCGA-56-7221         TCGA-56-7222 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-56-7223         TCGA-56-7579         TCGA-56-7580 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-56-7582         TCGA-56-7730         TCGA-56-7822 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-56-8503         TCGA-56-8504         TCGA-56-8622 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-56-8624         TCGA-56-8625         TCGA-56-8626 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-56-8628         TCGA-56-8629         TCGA-56-A49D 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-56-A4BX         TCGA-56-A4BY         TCGA-56-A4ZJ 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-56-A4ZK         TCGA-56-A5DS         TCGA-58-8386 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-58-8387         TCGA-58-8388         TCGA-58-8390 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-58-8391         TCGA-58-8392         TCGA-58-8393 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-58-A46J         TCGA-58-A46K         TCGA-58-A46L 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-58-A46M         TCGA-58-A46N         TCGA-60-2695 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-60-2696         TCGA-60-2697         TCGA-60-2698 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-60-2703         TCGA-60-2704         TCGA-60-2706 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED"   "12Q GAIN MUTATED" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
  "12Q GAIN MUTATED"   "12Q GAIN MUTATED"   "12Q GAIN MUTATED" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2756 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-66-2770         TCGA-66-2771         TCGA-66-2773 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-66-2785         TCGA-66-2786         TCGA-66-2787 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-68-7755         TCGA-68-7756         TCGA-68-7757 
  "12Q GAIN MUTATED"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-68-8250         TCGA-68-8251         TCGA-77-6842 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED"   "12Q GAIN MUTATED" 
        TCGA-77-6843         TCGA-77-6844         TCGA-77-6845 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-77-7138         TCGA-77-7139         TCGA-77-7140 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-77-7141         TCGA-77-7142         TCGA-77-7335 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-77-7337         TCGA-77-7338         TCGA-77-7463 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-77-7465         TCGA-77-8007         TCGA-77-8008 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-77-8009         TCGA-77-8128         TCGA-77-8130 
  "12Q GAIN MUTATED"   "12Q GAIN MUTATED"   "12Q GAIN MUTATED" 
        TCGA-77-8131         TCGA-77-8133         TCGA-77-8136 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-77-8138         TCGA-77-8139         TCGA-77-8140 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-77-8143         TCGA-77-8144         TCGA-77-8145 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-77-8148         TCGA-77-8150         TCGA-77-8153 
  "12Q GAIN MUTATED"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-77-8154         TCGA-77-8156         TCGA-77-A5FZ 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-77-A5G3         TCGA-77-A5GB         TCGA-77-A5GH 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
  "12Q GAIN MUTATED"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED"   "12Q GAIN MUTATED" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
  "12Q GAIN MUTATED"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED"   "12Q GAIN MUTATED" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-96-8169         TCGA-96-8170         TCGA-96-A4JK 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-96-A4JL         TCGA-98-7454         TCGA-98-8020 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-LA-A446         TCGA-MF-A522         TCGA-NC-A5HE 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
[1] "hr=" "1"  
D24V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  12Q GAIN MUTATED         0       20       33        1        16        23
  12Q GAIN WILD-TYPE       1       48      100        0        34        48
                    vv
clus                 STAGE IIIA STAGE IIIB STAGE IV
  12Q GAIN MUTATED           25          7        1
  12Q GAIN WILD-TYPE         29         13        4
D24V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  12Q GAIN MUTATED    27  74  16   9
  12Q GAIN WILD-TYPE  66 176  28  10
D24V4, multiclass
    clus
vv   12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  T1               27                 66
  T2               74                176
  T3               16                 28
  T4                9                 10
                    vv
clus                  N0  N1  N2  N3
  12Q GAIN MUTATED    67  41  15   1
  12Q GAIN WILD-TYPE 186  68  19   4
D24V5, multiclass
    clus
vv   12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  N0               67                186
  N1               41                 68
  N2               15                 19
  N3                1                  4
                    vv
clus                  M0  M1  MX
  12Q GAIN MUTATED   111   1  13
  12Q GAIN WILD-TYPE 237   4  34
D24V6, multiclass
    clus
vv   12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  M0              111                237
  M1                1                  4
  MX               13                 34
D24V7, binary
                    cls
clus                   0   1
  12Q GAIN MUTATED    20 106
  12Q GAIN WILD-TYPE  81 199
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12Q GAIN MUTATED     20  106
  12Q GAIN WILD-TYPE   81  199
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  FEMALE               20                 81
  MALE                106                199
D24V8, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  12Q GAIN MUTATED                                       4
  12Q GAIN WILD-TYPE                                     8
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  12Q GAIN MUTATED                                        1
  12Q GAIN WILD-TYPE                                      5
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  12Q GAIN MUTATED                                         0
  12Q GAIN WILD-TYPE                                       1
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  12Q GAIN MUTATED                                                           121
  12Q GAIN WILD-TYPE                                                         266
D24V9, multiclass
                                                             clus
vv                                                            12Q GAIN MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      4
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                     1
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                    0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              121
                                                             clus
vv                                                            12Q GAIN WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                        8
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                       5
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                      1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                266
D24V10, binary
                    cls
clus                   0   1
  12Q GAIN MUTATED     4 122
  12Q GAIN WILD-TYPE   8 272
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12Q GAIN MUTATED      4  122
  12Q GAIN WILD-TYPE    8  272
     clus
vv    12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  NO                 4                  8
  YES              122                272
D24V11, continuous
D24V12, continuous
                    vv
clus                  R0  R1  R2  RX
  12Q GAIN MUTATED   103   3   1   6
  12Q GAIN WILD-TYPE 227   5   3  12
D24V13, multiclass
    clus
vv   12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  R0              103                227
  R1                3                  5
  R2                1                  3
  RX                6                 12

Clustering(25) Variable = 13Q GAIN MUTATION ANALYSIS
D25V1, survival
                    sevent
clus2                  0   1
  13Q GAIN MUTATED    20   9
  13Q GAIN WILD-TYPE 219 129
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                29                348 
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                 9                129 
$`13Q GAIN MUTATED`
TCGA-18-3407 TCGA-18-3412 TCGA-21-1079 TCGA-21-1081 TCGA-21-1082 TCGA-22-4599 
        4.47        11.34        31.69         9.30       119.80        38.17 
TCGA-33-4533 TCGA-37-4130 TCGA-39-5034 TCGA-39-5035 TCGA-43-2576 TCGA-43-7657 
      114.05         8.09        36.39        15.58        40.21         1.58 
TCGA-43-A56V TCGA-51-4081 TCGA-52-7810 TCGA-56-5897 TCGA-56-5898 TCGA-56-7223 
        5.06        29.95        30.31         0.10        18.25         0.99 
TCGA-56-7822 TCGA-56-A4BX TCGA-60-2698 TCGA-66-2737 TCGA-66-2791 TCGA-77-8133 
        0.03         1.51        10.22         2.01         5.03        53.92 
TCGA-85-7696 TCGA-85-7843 TCGA-85-A50M TCGA-94-7943 TCGA-MF-A522 
        0.59         1.15         0.62        11.70         3.02 

$`13Q GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 TCGA-18-3414 
       12.16        81.07        79.46         4.80        46.52        13.02 
TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 
       59.51        28.34        24.92         1.61        43.76         6.15 
TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 
        2.79        90.51         3.02        27.16       119.54        46.88 
TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1080 
       99.16        70.13        60.89        34.78        15.55       122.43 
TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 
        8.78        31.63        88.08        41.69        33.93        10.82 
TCGA-21-A5DI TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 
       32.19        19.99         7.33        14.93         4.31        64.21 
TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 TCGA-22-4593 
        1.74        14.10        27.02        48.82        20.45        35.08 
TCGA-22-4594 TCGA-22-4595 TCGA-22-4596 TCGA-22-4601 TCGA-22-4604 TCGA-22-4605 
       48.33        24.13         0.56        34.75        13.12        32.02 
TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       19.30         9.53        11.77        31.73        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 
       14.60        44.22         0.79        54.28        71.34        79.20 
TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 
       11.74        18.84        30.08        62.86        56.32        16.60 
TCGA-22-A5C4 TCGA-33-4532 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 
        0.95         7.63        97.94        43.10       173.79       103.53 
TCGA-33-4583 TCGA-33-4586 TCGA-33-4587 TCGA-33-4589 TCGA-33-6737 TCGA-33-6738 
      141.34        14.07        54.44        10.98        19.76        26.99 
TCGA-34-2596 TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 
        2.63        61.61        31.50        28.96        32.84        31.23 
TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 
       50.24        67.79        56.38         9.04        23.24        12.00 
TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 
       14.07        30.94        18.12         4.96         1.08         3.95 
TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 
        0.43         0.39         6.54         7.46         7.82         6.81 
TCGA-37-4141 TCGA-37-5819 TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 
        0.39         3.39        47.80        74.07        44.71        68.58 
TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 
       55.17        70.03        60.76         1.71        24.33         1.94 
TCGA-39-5031 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-39-5040 TCGA-43-2578 
       27.35        35.64        35.70        17.88        17.06        22.49 
TCGA-43-2581 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-5670 TCGA-43-6143 
       38.66        27.02        33.07        11.47        18.05        12.36 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7658 
       24.89        10.19         5.42         3.78         6.97        66.51 
TCGA-43-8115 TCGA-43-8116 TCGA-43-8118 TCGA-43-A474 TCGA-43-A475 TCGA-46-3768 
        6.64         6.35         2.93        11.61         9.73         9.96 
TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-52-7622 TCGA-52-7809 
       10.65        13.87         0.39         0.39        17.79         5.42 
TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 
        8.75        27.45        28.93         2.04         1.02         0.99 
TCGA-56-7222 TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 TCGA-56-7730 TCGA-56-8503 
        0.43         1.45         1.32         0.85         0.20         1.35 
TCGA-56-8504 TCGA-56-8622 TCGA-56-8624 TCGA-56-8625 TCGA-56-8626 TCGA-56-8628 
        5.82         1.78         1.18         2.07         0.56         0.53 
TCGA-56-8629 TCGA-56-A49D TCGA-56-A4BY TCGA-56-A4ZJ TCGA-56-A4ZK TCGA-56-A5DS 
        1.12         0.99         0.99         1.02         0.13         0.26 
TCGA-58-8386 TCGA-58-8387 TCGA-58-8388 TCGA-58-8390 TCGA-58-8391 TCGA-58-8392 
        0.03        13.25        12.43        29.95        71.24        16.47 
TCGA-58-8393 TCGA-58-A46J TCGA-58-A46K TCGA-58-A46L TCGA-58-A46M TCGA-58-A46N 
       34.78        64.87        34.36        36.59        23.24        17.72 
TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 
       21.07         3.58        12.23        96.82        37.94        92.71 
TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 
       21.70        80.42        49.48        66.51        41.39         9.01 
TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 
       56.91        50.33        35.34        48.49        42.61         3.16 
TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 
       32.28        29.85        35.90        23.57        26.79        11.77 
TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 
       16.96        43.10        21.07         0.99         1.02         2.01 
TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 
        0.92         0.99         0.99        20.98        25.02         0.99 
TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 TCGA-66-2770 
        2.01         1.02         2.01         2.01         7.07        23.01 
TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 
       19.00         3.02         2.01        19.00        12.03         3.98 
TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 
       12.00        24.95         1.94        25.97        40.01        22.98 
TCGA-66-2789 TCGA-66-2790 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 
        4.04        22.98        30.02        10.06        54.08         4.01 
TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 TCGA-68-7757 TCGA-68-8250 TCGA-68-8251 
       49.05         2.73         6.64         6.94         8.02         3.12 
TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 
       29.56        73.08        75.09        23.28        11.18        89.95 
TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 
       20.78         0.49        42.25        70.09       106.95         0.16 
TCGA-77-7463 TCGA-77-7465 TCGA-77-8007 TCGA-77-8008 TCGA-77-8009 TCGA-77-8128 
       46.78        15.75         6.51        86.76        53.95        37.81 
TCGA-77-8130 TCGA-77-8131 TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 
       82.92        12.59        39.09        17.69       104.09        11.54 
TCGA-77-8143 TCGA-77-8144 TCGA-77-8145 TCGA-77-8148 TCGA-77-8150 TCGA-77-8153 
       26.40        27.39         6.97         9.63        54.41        55.33 
TCGA-77-8154 TCGA-77-8156 TCGA-77-A5FZ TCGA-77-A5G3 TCGA-77-A5GB TCGA-77-A5GH 
       35.90         0.33       126.18       117.57        30.81        23.44 
TCGA-85-6560 TCGA-85-6561 TCGA-85-6798 TCGA-85-7697 TCGA-85-7698 TCGA-85-7699 
        0.36         0.79         1.12         0.33         1.61         0.03 
TCGA-85-7844 TCGA-85-7950 TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 
        1.25         1.97         0.85         1.97         0.53        16.77 
TCGA-85-8071 TCGA-85-8072 TCGA-85-8276 TCGA-85-8277 TCGA-85-8287 TCGA-85-8288 
       14.07         1.18         0.43         0.36         1.45         1.78 
TCGA-85-8350 TCGA-85-8351 TCGA-85-8352 TCGA-85-8353 TCGA-85-8354 TCGA-85-8355 
        1.97         1.81         2.20         1.78         2.01         0.66 
TCGA-85-8479 TCGA-85-8481 TCGA-85-8580 TCGA-85-8582 TCGA-85-8664 TCGA-85-8666 
        0.72         0.66        14.60        13.91         0.10        15.58 
TCGA-85-A4CL TCGA-85-A4QR TCGA-85-A513 TCGA-85-A53L TCGA-90-6837 TCGA-90-7766 
        0.46         0.82         0.79         0.43        24.89         9.50 
TCGA-90-7767 TCGA-90-7769 TCGA-90-7964 TCGA-90-A4ED TCGA-90-A4EE TCGA-92-7340 
        2.93        11.77        14.07         8.02        10.88         2.70 
TCGA-92-7341 TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 
        3.48         4.01         5.26         2.27         2.86         0.16 
TCGA-96-7544 TCGA-96-7545 TCGA-96-8169 TCGA-96-8170 TCGA-96-A4JK TCGA-96-A4JL 
       39.88        44.15         6.18         6.90         8.98         6.02 
TCGA-98-7454 TCGA-98-8020 TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 TCGA-J1-A4AH 
        8.42         2.73        13.58         7.33        10.13         7.30 
TCGA-L3-A4E7 TCGA-L3-A524 TCGA-LA-A446 TCGA-NC-A5HE TCGA-NC-A5HG TCGA-NC-A5HI 
        1.15        14.76         1.18        56.61        50.86        37.32 

  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
              0.03               0.03 
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
            119.80             173.79 
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
              9.30              14.07 
[1] "0.0 - 119.8 (9.3)"  "0.0 - 173.8 (14.1)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
  "13Q GAIN MUTATED"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-22-A5C4         TCGA-33-4532         TCGA-33-4533 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-33-4538         TCGA-33-4547         TCGA-33-4566 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-33-4582         TCGA-33-4583         TCGA-33-4586 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-33-4587         TCGA-33-4589         TCGA-33-6737 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-33-6738         TCGA-34-2596         TCGA-34-2600 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-34-2604         TCGA-34-2605         TCGA-34-2608 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-34-2609         TCGA-34-5231         TCGA-34-5232 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-34-5234         TCGA-34-5236         TCGA-34-5239 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-34-5240         TCGA-34-5241         TCGA-34-5927 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-34-5928         TCGA-34-5929         TCGA-34-7107 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-3792 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4132 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-37-4133         TCGA-37-4135         TCGA-37-4141 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-37-5819         TCGA-39-5011         TCGA-39-5016 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-39-5019         TCGA-39-5021         TCGA-39-5022 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-39-5024         TCGA-39-5027         TCGA-39-5028 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-39-5029         TCGA-39-5030         TCGA-39-5031 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-39-5034         TCGA-39-5035         TCGA-39-5036 
  "13Q GAIN MUTATED"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-39-5037         TCGA-39-5039         TCGA-39-5040 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-43-8118 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-43-A474         TCGA-43-A475         TCGA-43-A56V 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-46-3768         TCGA-46-6025         TCGA-46-6026 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-51-4079         TCGA-51-4080         TCGA-51-4081 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-52-7622         TCGA-52-7809         TCGA-52-7810 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-52-7811         TCGA-52-7812         TCGA-56-1622 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-56-5897         TCGA-56-5898         TCGA-56-6545 
  "13Q GAIN MUTATED"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-56-6546         TCGA-56-7221         TCGA-56-7222 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-56-7223         TCGA-56-7579         TCGA-56-7580 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-56-7582         TCGA-56-7730         TCGA-56-7822 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-56-8503         TCGA-56-8504         TCGA-56-8622 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-56-8624         TCGA-56-8625         TCGA-56-8626 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-56-8628         TCGA-56-8629         TCGA-56-A49D 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-56-A4BX         TCGA-56-A4BY         TCGA-56-A4ZJ 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-56-A4ZK         TCGA-56-A5DS         TCGA-58-8386 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-58-8387         TCGA-58-8388         TCGA-58-8390 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-58-8391         TCGA-58-8392         TCGA-58-8393 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-58-A46J         TCGA-58-A46K         TCGA-58-A46L 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-58-A46M         TCGA-58-A46N         TCGA-60-2695 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-60-2696         TCGA-60-2697         TCGA-60-2698 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-60-2703         TCGA-60-2704         TCGA-60-2706 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2756 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-66-2770         TCGA-66-2771         TCGA-66-2773 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
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  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
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  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
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"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-96-8169         TCGA-96-8170         TCGA-96-A4JK 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-96-A4JL         TCGA-98-7454         TCGA-98-8020 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-LA-A446         TCGA-MF-A522         TCGA-NC-A5HE 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
[1] "hr=" "1"  
D25V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  13Q GAIN MUTATED         0        5        8        0         6         7
  13Q GAIN WILD-TYPE       1       63      125        1        44        64
                    vv
clus                 STAGE IIIA STAGE IIIB STAGE IV
  13Q GAIN MUTATED            4          1        0
  13Q GAIN WILD-TYPE         50         19        5
D25V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  13Q GAIN MUTATED     8  18   5   0
  13Q GAIN WILD-TYPE  85 232  39  19
D25V4, multiclass
    clus
vv   13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  T1                8                 85
  T2               18                232
  T3                5                 39
  T4                0                 19
                    vv
clus                  N0  N1  N2  N3
  13Q GAIN MUTATED    19   8   2   1
  13Q GAIN WILD-TYPE 234 101  32   4
D25V5, multiclass
    clus
vv   13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  N0               19                234
  N1                8                101
  N2                2                 32
  N3                1                  4
                    vv
clus                  M0  M1  MX
  13Q GAIN MUTATED    25   0   6
  13Q GAIN WILD-TYPE 323   5  41
D25V6, multiclass
    clus
vv   13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  M0               25                323
  M1                0                  5
  MX                6                 41
D25V7, binary
                    cls
clus                   0   1
  13Q GAIN MUTATED     7  24
  13Q GAIN WILD-TYPE  94 281
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  13Q GAIN MUTATED      7   24
  13Q GAIN WILD-TYPE   94  281
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  FEMALE                7                 94
  MALE                 24                281
D25V8, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  13Q GAIN MUTATED                                       0
  13Q GAIN WILD-TYPE                                    12
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  13Q GAIN MUTATED                                        1
  13Q GAIN WILD-TYPE                                      5
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  13Q GAIN MUTATED                                         0
  13Q GAIN WILD-TYPE                                       1
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  13Q GAIN MUTATED                                                            30
  13Q GAIN WILD-TYPE                                                         357
D25V9, multiclass
                                                             clus
vv                                                            13Q GAIN MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      0
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                     1
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                    0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               30
                                                             clus
vv                                                            13Q GAIN WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       12
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                       5
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                      1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                357
D25V10, binary
                    cls
clus                   0   1
  13Q GAIN MUTATED     1  30
  13Q GAIN WILD-TYPE  11 364
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  13Q GAIN MUTATED      1   30
  13Q GAIN WILD-TYPE   11  364
     clus
vv    13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  NO                 1                 11
  YES               30                364
D25V11, continuous
D25V12, continuous
                    vv
clus                  R0  R1  R2  RX
  13Q GAIN MUTATED    23   1   0   2
  13Q GAIN WILD-TYPE 307   7   4  16
D25V13, multiclass
    clus
vv   13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  R0               23                307
  R1                1                  7
  R2                0                  4
  RX                2                 16

Clustering(26) Variable = 14Q GAIN MUTATION ANALYSIS
D26V1, survival
                    sevent
clus2                  0   1
  14Q GAIN MUTATED    66  28
  14Q GAIN WILD-TYPE 173 110
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
                94                283 
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
                28                110 
$`14Q GAIN MUTATED`
TCGA-18-3408 TCGA-18-3411 TCGA-18-3412 TCGA-18-3415 TCGA-18-3421 TCGA-18-5592 
       81.07        46.52        11.34        59.51        43.76         3.02 
TCGA-21-1076 TCGA-21-1079 TCGA-21-1082 TCGA-21-5786 TCGA-22-4591 TCGA-22-4593 
       60.89        31.69       119.80        33.93        20.45        35.08 
TCGA-22-4595 TCGA-22-5471 TCGA-22-A5C4 TCGA-33-4532 TCGA-33-4533 TCGA-33-4566 
       24.13        31.73         0.95         7.63       114.05       173.79 
TCGA-33-4582 TCGA-33-4589 TCGA-33-6737 TCGA-37-3792 TCGA-37-5819 TCGA-39-5011 
      103.53        10.98        19.76         0.39         3.39        47.80 
TCGA-39-5029 TCGA-39-5031 TCGA-39-5037 TCGA-43-2578 TCGA-43-6143 TCGA-43-6771 
       24.33        27.35        35.70        22.49        12.36         5.42 
TCGA-43-8118 TCGA-43-A56V TCGA-46-6025 TCGA-51-4081 TCGA-52-7622 TCGA-52-7811 
        2.93         5.06        10.65        29.95        17.79         8.75 
TCGA-56-1622 TCGA-56-5898 TCGA-56-6545 TCGA-56-6546 TCGA-56-7580 TCGA-56-7730 
       28.93        18.25         2.04         1.02         1.32         0.20 
TCGA-56-8504 TCGA-56-8624 TCGA-56-8629 TCGA-56-A49D TCGA-56-A4ZK TCGA-58-8393 
        5.82         1.18         1.12         0.99         0.13        34.78 
TCGA-58-A46M TCGA-58-A46N TCGA-60-2698 TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 
       23.24        17.72        10.22        92.71        21.70        80.42 
TCGA-60-2719 TCGA-60-2722 TCGA-60-2724 TCGA-66-2744 TCGA-66-2756 TCGA-66-2763 
       42.61        29.85        23.57         0.99         0.99         0.99 
TCGA-66-2765 TCGA-66-2771 TCGA-66-2782 TCGA-66-2788 TCGA-66-2792 TCGA-66-2793 
        2.01        19.00        12.00        22.98        30.02        10.06 
TCGA-66-2800 TCGA-68-7755 TCGA-77-6845 TCGA-77-7138 TCGA-77-7142 TCGA-77-7337 
       49.05         2.73        23.28        11.18        42.25       106.95 
TCGA-77-7463 TCGA-77-8007 TCGA-77-8130 TCGA-77-8136 TCGA-77-8139 TCGA-77-8143 
       46.78         6.51        82.92        39.09       104.09        26.40 
TCGA-77-8150 TCGA-77-8153 TCGA-77-A5G3 TCGA-85-6561 TCGA-85-7698 TCGA-85-8353 
       54.41        55.33       117.57         0.79         1.61         1.78 
TCGA-85-8355 TCGA-85-A50M TCGA-92-7340 TCGA-92-7341 TCGA-96-A4JK TCGA-98-8020 
        0.66         0.62         2.70         3.48         8.98         2.73 
TCGA-L3-A4E7 TCGA-L3-A524 TCGA-NC-A5HG TCGA-NC-A5HI 
        1.15        14.76        50.86        37.32 

$`14Q GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3409 TCGA-18-3410 TCGA-18-3414 TCGA-18-3416 
       12.16         4.47        79.46         4.80        13.02        28.34 
TCGA-18-3417 TCGA-18-3419 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5595 
       24.92         1.61         6.15         2.79        90.51        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 TCGA-21-1077 TCGA-21-1078 
      119.54        46.88        99.16        70.13        34.78        15.55 
TCGA-21-1080 TCGA-21-1081 TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 
      122.43         9.30         8.78        31.63        88.08        41.69 
TCGA-21-5787 TCGA-21-A5DI TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 
       10.82        32.19        19.99         7.33        14.93         4.31 
TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 TCGA-22-4594 
       64.21         1.74        14.10        27.02        48.82        48.33 
TCGA-22-4596 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 
        0.56        38.17        34.75        13.12        32.02        19.30 
TCGA-22-4609 TCGA-22-4613 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 
        9.53        11.77        64.90        63.52        14.60        44.22 
TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 TCGA-22-5482 TCGA-22-5483 
        0.79        54.28        71.34        79.20        11.74        18.84 
TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4538 TCGA-33-4547 
       30.08        62.86        56.32        16.60        97.94        43.10 
TCGA-33-4583 TCGA-33-4586 TCGA-33-4587 TCGA-33-6738 TCGA-34-2596 TCGA-34-2600 
      141.34        14.07        54.44        26.99         2.63        61.61 
TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 TCGA-34-5232 
       31.50        28.96        32.84        31.23        50.24        67.79 
TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 
       56.38         9.04        23.24        12.00        14.07        30.94 
TCGA-34-5928 TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 TCGA-37-4129 
       18.12         4.96         1.08         3.95         0.43         6.54 
TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-39-5016 
        8.09         7.46         7.82         6.81         0.39        74.07 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       44.71        68.58        55.17        70.03        60.76         1.71 
TCGA-39-5030 TCGA-39-5034 TCGA-39-5035 TCGA-39-5036 TCGA-39-5039 TCGA-39-5040 
        1.94        36.39        15.58        35.64        17.88        17.06 
TCGA-43-2576 TCGA-43-2581 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-5670 
       40.21        38.66        27.02        33.07        11.47        18.05 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 
       24.89        10.19         3.78         6.97         1.58        66.51 
TCGA-43-8115 TCGA-43-8116 TCGA-43-A474 TCGA-43-A475 TCGA-46-3768 TCGA-46-6026 
        6.64         6.35        11.61         9.73         9.96        13.87 
TCGA-51-4079 TCGA-51-4080 TCGA-52-7809 TCGA-52-7810 TCGA-52-7812 TCGA-56-5897 
        0.39         0.39         5.42        30.31        27.45         0.10 
TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 TCGA-56-7582 TCGA-56-7822 
        0.99         0.43         0.99         1.45         0.85         0.03 
TCGA-56-8503 TCGA-56-8622 TCGA-56-8625 TCGA-56-8626 TCGA-56-8628 TCGA-56-A4BX 
        1.35         1.78         2.07         0.56         0.53         1.51 
TCGA-56-A4BY TCGA-56-A4ZJ TCGA-56-A5DS TCGA-58-8386 TCGA-58-8387 TCGA-58-8388 
        0.99         1.02         0.26         0.03        13.25        12.43 
TCGA-58-8390 TCGA-58-8391 TCGA-58-8392 TCGA-58-A46J TCGA-58-A46K TCGA-58-A46L 
       29.95        71.24        16.47        64.87        34.36        36.59 
TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 TCGA-60-2703 TCGA-60-2704 TCGA-60-2709 
       21.07         3.58        12.23        96.82        37.94        49.48 
TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 
       66.51        41.39         9.01        56.91        50.33        35.34 
TCGA-60-2716 TCGA-60-2720 TCGA-60-2721 TCGA-60-2723 TCGA-60-2725 TCGA-60-2726 
       48.49         3.16        32.28        35.90        26.79        11.77 
TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 TCGA-66-2753 TCGA-66-2754 
       16.96        43.10         2.01        21.07         1.02         2.01 
TCGA-66-2755 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2766 TCGA-66-2767 
        0.92         0.99        20.98        25.02         1.02         2.01 
TCGA-66-2768 TCGA-66-2769 TCGA-66-2770 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 
        2.01         7.07        23.01         3.02         2.01        19.00 
TCGA-66-2780 TCGA-66-2781 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 
       12.03         3.98        24.95         1.94        25.97        40.01 
TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 TCGA-66-2794 TCGA-66-2795 TCGA-68-7756 
        4.04        22.98         5.03        54.08         4.01         6.64 
TCGA-68-7757 TCGA-68-8250 TCGA-68-8251 TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 
        6.94         8.02         3.12        29.56        73.08        75.09 
TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 TCGA-77-7335 TCGA-77-7338 TCGA-77-7465 
       89.95        20.78         0.49        70.09         0.16        15.75 
TCGA-77-8008 TCGA-77-8009 TCGA-77-8128 TCGA-77-8131 TCGA-77-8133 TCGA-77-8138 
       86.76        53.95        37.81        12.59        53.92        17.69 
TCGA-77-8140 TCGA-77-8144 TCGA-77-8145 TCGA-77-8148 TCGA-77-8154 TCGA-77-8156 
       11.54        27.39         6.97         9.63        35.90         0.33 
TCGA-77-A5FZ TCGA-77-A5GB TCGA-77-A5GH TCGA-85-6560 TCGA-85-6798 TCGA-85-7696 
      126.18        30.81        23.44         0.36         1.12         0.59 
TCGA-85-7697 TCGA-85-7699 TCGA-85-7843 TCGA-85-7844 TCGA-85-7950 TCGA-85-8048 
        0.33         0.03         1.15         1.25         1.97         0.85 
TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 TCGA-85-8276 
        1.97         0.53        16.77        14.07         1.18         0.43 
TCGA-85-8277 TCGA-85-8287 TCGA-85-8288 TCGA-85-8350 TCGA-85-8351 TCGA-85-8352 
        0.36         1.45         1.78         1.97         1.81         2.20 
TCGA-85-8354 TCGA-85-8479 TCGA-85-8481 TCGA-85-8580 TCGA-85-8582 TCGA-85-8664 
        2.01         0.72         0.66        14.60        13.91         0.10 
TCGA-85-8666 TCGA-85-A4CL TCGA-85-A4QR TCGA-85-A513 TCGA-85-A53L TCGA-90-6837 
       15.58         0.46         0.82         0.79         0.43        24.89 
TCGA-90-7766 TCGA-90-7767 TCGA-90-7769 TCGA-90-7964 TCGA-90-A4ED TCGA-90-A4EE 
        9.50         2.93        11.77        14.07         8.02        10.88 
TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 TCGA-94-7943 
        4.01         5.26         2.27         2.86         0.16        11.70 
TCGA-96-7544 TCGA-96-7545 TCGA-96-8169 TCGA-96-8170 TCGA-96-A4JL TCGA-98-7454 
       39.88        44.15         6.18         6.90         6.02         8.42 
TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 TCGA-J1-A4AH TCGA-LA-A446 TCGA-MF-A522 
       13.58         7.33        10.13         7.30         1.18         3.02 
TCGA-NC-A5HE 
       56.61 

  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
              0.13               0.03 
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
            173.79             141.34 
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
             19.38              12.43 
[1] "0.1 - 173.8 (19.4)" "0.0 - 141.3 (12.4)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
  "14Q GAIN MUTATED"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
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  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
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"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
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  "14Q GAIN MUTATED"   "14Q GAIN MUTATED"   "14Q GAIN MUTATED" 
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"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
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  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
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"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
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"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
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"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
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"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
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"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
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"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
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"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
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  "14Q GAIN MUTATED"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
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  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
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  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
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  "14Q GAIN MUTATED"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
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  "14Q GAIN MUTATED"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
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  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
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"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
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  "14Q GAIN MUTATED"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
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"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
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"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
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"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
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  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
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"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
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"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
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  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
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"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
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  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
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"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
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"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
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  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
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"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED"   "14Q GAIN MUTATED" 
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"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
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  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
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"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
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"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
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"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
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"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
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"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
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  "14Q GAIN MUTATED"   "14Q GAIN MUTATED" 
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"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-43-8118 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-43-A474         TCGA-43-A475         TCGA-43-A56V 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-46-3768         TCGA-46-6025         TCGA-46-6026 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-51-4079         TCGA-51-4080         TCGA-51-4081 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-52-7622         TCGA-52-7809         TCGA-52-7810 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-52-7811         TCGA-52-7812         TCGA-56-1622 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-56-5897         TCGA-56-5898         TCGA-56-6545 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED"   "14Q GAIN MUTATED" 
        TCGA-56-6546         TCGA-56-7221         TCGA-56-7222 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-56-7223         TCGA-56-7579         TCGA-56-7580 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-56-7582         TCGA-56-7730         TCGA-56-7822 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-56-8503         TCGA-56-8504         TCGA-56-8622 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-56-8624         TCGA-56-8625         TCGA-56-8626 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-56-8628         TCGA-56-8629         TCGA-56-A49D 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED"   "14Q GAIN MUTATED" 
        TCGA-56-A4BX         TCGA-56-A4BY         TCGA-56-A4ZJ 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-56-A4ZK         TCGA-56-A5DS         TCGA-58-8386 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-58-8387         TCGA-58-8388         TCGA-58-8390 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-58-8391         TCGA-58-8392         TCGA-58-8393 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-58-A46J         TCGA-58-A46K         TCGA-58-A46L 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-58-A46M         TCGA-58-A46N         TCGA-60-2695 
  "14Q GAIN MUTATED"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-60-2696         TCGA-60-2697         TCGA-60-2698 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-60-2703         TCGA-60-2704         TCGA-60-2706 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
  "14Q GAIN MUTATED"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2756 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
  "14Q GAIN MUTATED"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-66-2770         TCGA-66-2771         TCGA-66-2773 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-66-2785         TCGA-66-2786         TCGA-66-2787 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED"   "14Q GAIN MUTATED" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-68-7755         TCGA-68-7756         TCGA-68-7757 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-68-8250         TCGA-68-8251         TCGA-77-6842 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-77-6843         TCGA-77-6844         TCGA-77-6845 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-77-7138         TCGA-77-7139         TCGA-77-7140 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-77-7141         TCGA-77-7142         TCGA-77-7335 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-77-7337         TCGA-77-7338         TCGA-77-7463 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-77-7465         TCGA-77-8007         TCGA-77-8008 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-77-8009         TCGA-77-8128         TCGA-77-8130 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-77-8131         TCGA-77-8133         TCGA-77-8136 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-77-8138         TCGA-77-8139         TCGA-77-8140 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-77-8143         TCGA-77-8144         TCGA-77-8145 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-77-8148         TCGA-77-8150         TCGA-77-8153 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED"   "14Q GAIN MUTATED" 
        TCGA-77-8154         TCGA-77-8156         TCGA-77-A5FZ 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-77-A5G3         TCGA-77-A5GB         TCGA-77-A5GH 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-96-8169         TCGA-96-8170         TCGA-96-A4JK 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-96-A4JL         TCGA-98-7454         TCGA-98-8020 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED"   "14Q GAIN MUTATED" 
        TCGA-LA-A446         TCGA-MF-A522         TCGA-NC-A5HE 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
  "14Q GAIN MUTATED"   "14Q GAIN MUTATED" 
[1] "hr=" "1.7"
D26V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  14Q GAIN MUTATED         0       11       36        0        12        23
  14Q GAIN WILD-TYPE       1       57       97        1        38        48
                    vv
clus                 STAGE IIIA STAGE IIIB STAGE IV
  14Q GAIN MUTATED           17          3        0
  14Q GAIN WILD-TYPE         37         17        5
D26V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  14Q GAIN MUTATED    16  66  17   3
  14Q GAIN WILD-TYPE  77 184  27  16
D26V4, multiclass
    clus
vv   14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  T1               16                 77
  T2               66                184
  T3               17                 27
  T4                3                 16
                    vv
clus                  N0  N1  N2  N3
  14Q GAIN MUTATED    66  25  11   0
  14Q GAIN WILD-TYPE 187  84  23   5
D26V5, multiclass
    clus
vv   14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  N0               66                187
  N1               25                 84
  N2               11                 23
  N3                0                  5
                    vv
clus                  M0  M1  MX
  14Q GAIN MUTATED    93   0   8
  14Q GAIN WILD-TYPE 255   5  39
D26V6, multiclass
    clus
vv   14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  M0               93                255
  M1                0                  5
  MX                8                 39
D26V7, binary
                    cls
clus                   0   1
  14Q GAIN MUTATED    26  76
  14Q GAIN WILD-TYPE  75 229
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  14Q GAIN MUTATED     26   76
  14Q GAIN WILD-TYPE   75  229
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  FEMALE               26                 75
  MALE                 76                229
D26V8, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  14Q GAIN MUTATED                                       3
  14Q GAIN WILD-TYPE                                     9
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  14Q GAIN MUTATED                                        1
  14Q GAIN WILD-TYPE                                      5
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  14Q GAIN MUTATED                                         0
  14Q GAIN WILD-TYPE                                       1
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  14Q GAIN MUTATED                                                            98
  14Q GAIN WILD-TYPE                                                         289
D26V9, multiclass
                                                             clus
vv                                                            14Q GAIN MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      3
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                     1
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                    0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               98
                                                             clus
vv                                                            14Q GAIN WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                        9
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                       5
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                      1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                289
D26V10, binary
                    cls
clus                   0   1
  14Q GAIN MUTATED     2 100
  14Q GAIN WILD-TYPE  10 294
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  14Q GAIN MUTATED      2  100
  14Q GAIN WILD-TYPE   10  294
     clus
vv    14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  NO                 2                 10
  YES              100                294
D26V11, continuous
D26V12, continuous
                    vv
clus                  R0  R1  R2  RX
  14Q GAIN MUTATED    85   2   1   6
  14Q GAIN WILD-TYPE 245   6   3  12
D26V13, multiclass
    clus
vv   14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  R0               85                245
  R1                2                  6
  R2                1                  3
  RX                6                 12

Clustering(27) Variable = 15Q GAIN MUTATION ANALYSIS
D27V1, survival
                    sevent
clus2                  0   1
  15Q GAIN MUTATED    51  30
  15Q GAIN WILD-TYPE 188 108
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                81                296 
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                30                108 
$`15Q GAIN MUTATED`
TCGA-18-3410 TCGA-18-3414 TCGA-18-3417 TCGA-18-3421 TCGA-18-4083 TCGA-21-1077 
        4.80        13.02        24.92        43.76         6.15        34.78 
TCGA-21-1079 TCGA-21-1082 TCGA-21-5786 TCGA-22-4593 TCGA-22-4604 TCGA-22-4605 
       31.69       119.80        33.93        35.08        13.12        32.02 
TCGA-22-5472 TCGA-22-5474 TCGA-22-5482 TCGA-22-5483 TCGA-33-4538 TCGA-33-4566 
       64.90        14.60        11.74        18.84        97.94       173.79 
TCGA-33-4583 TCGA-34-2596 TCGA-34-2605 TCGA-34-2609 TCGA-34-5231 TCGA-34-5240 
      141.34         2.63        28.96        31.23        50.24        12.00 
TCGA-37-3792 TCGA-39-5037 TCGA-43-3394 TCGA-43-6770 TCGA-43-A475 TCGA-56-7222 
        0.39        35.70        27.02        10.19         9.73         0.43 
TCGA-56-7579 TCGA-56-7582 TCGA-58-8391 TCGA-58-8393 TCGA-58-A46K TCGA-60-2695 
        1.45         0.85        71.24        34.78        34.36        21.07 
TCGA-60-2696 TCGA-60-2706 TCGA-60-2710 TCGA-60-2711 TCGA-60-2719 TCGA-60-2722 
        3.58        92.71        66.51        41.39        42.61        29.85 
TCGA-60-2724 TCGA-60-2725 TCGA-66-2734 TCGA-66-2754 TCGA-66-2767 TCGA-66-2769 
       23.57        26.79        43.10         2.01         2.01         7.07 
TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-68-7755 TCGA-77-7140 TCGA-77-7141 
       23.01        19.00         3.02         2.73        20.78         0.49 
TCGA-77-7463 TCGA-77-7465 TCGA-77-8133 TCGA-77-8136 TCGA-77-8150 TCGA-85-6561 
       46.78        15.75        53.92        39.09        54.41         0.79 
TCGA-85-6798 TCGA-85-7844 TCGA-85-7950 TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 
        1.12         1.25         1.97         1.97         0.53        16.77 
TCGA-85-8276 TCGA-85-8277 TCGA-85-8351 TCGA-85-8352 TCGA-85-8354 TCGA-85-8481 
        0.43         0.36         1.81         2.20         2.01         0.66 
TCGA-85-8664 TCGA-90-7769 TCGA-92-7341 TCGA-94-7943 TCGA-96-7545 TCGA-98-8020 
        0.10        11.77         3.48        11.70        44.15         2.73 
TCGA-L3-A524 TCGA-LA-A446 TCGA-NC-A5HE 
       14.76         1.18        56.61 

$`15Q GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07        79.46        46.52        11.34 
TCGA-18-3415 TCGA-18-3416 TCGA-18-3419 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 
       59.51        28.34         1.61         2.79        90.51         3.02 
TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 
       27.16       119.54        46.88        99.16        70.13        60.89 
TCGA-21-1078 TCGA-21-1080 TCGA-21-1081 TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 
       15.55       122.43         9.30         8.78        31.63        88.08 
TCGA-21-5784 TCGA-21-5787 TCGA-21-A5DI TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 
       41.69        10.82        32.19        19.99         7.33        14.93 
TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 
        4.31        64.21         1.74        14.10        27.02        48.82 
TCGA-22-4591 TCGA-22-4594 TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 TCGA-22-4601 
       20.45        48.33        24.13         0.56        38.17        34.75 
TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 TCGA-22-5473 TCGA-22-5477 
       19.30         9.53        11.77        31.73        63.52        44.22 
TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 TCGA-22-5485 TCGA-22-5489 
        0.79        54.28        71.34        79.20        30.08        62.86 
TCGA-22-5491 TCGA-22-5492 TCGA-22-A5C4 TCGA-33-4532 TCGA-33-4533 TCGA-33-4547 
       56.32        16.60         0.95         7.63       114.05        43.10 
TCGA-33-4582 TCGA-33-4586 TCGA-33-4587 TCGA-33-4589 TCGA-33-6737 TCGA-33-6738 
      103.53        14.07        54.44        10.98        19.76        26.99 
TCGA-34-2600 TCGA-34-2604 TCGA-34-2608 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 
       61.61        31.50        32.84        67.79        56.38         9.04 
TCGA-34-5239 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-34-7107 
       23.24        14.07        30.94        18.12         4.96         1.08 
TCGA-37-3783 TCGA-37-3789 TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 
        3.95         0.43         6.54         8.09         7.46         7.82 
TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 
        6.81         0.39         3.39        47.80        74.07        44.71 
TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 
       68.58        55.17        70.03        60.76         1.71        24.33 
TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 TCGA-39-5035 TCGA-39-5036 TCGA-39-5039 
        1.94        27.35        36.39        15.58        35.64        17.88 
TCGA-39-5040 TCGA-43-2576 TCGA-43-2578 TCGA-43-2581 TCGA-43-3920 TCGA-43-5668 
       17.06        40.21        22.49        38.66        33.07        11.47 
TCGA-43-5670 TCGA-43-6143 TCGA-43-6647 TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 
       18.05        12.36        24.89         5.42         3.78         6.97 
TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 TCGA-43-8118 TCGA-43-A474 
        1.58        66.51         6.64         6.35         2.93        11.61 
TCGA-43-A56V TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 
        5.06         9.96        10.65        13.87         0.39         0.39 
TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 TCGA-52-7810 TCGA-52-7811 TCGA-52-7812 
       29.95        17.79         5.42        30.31         8.75        27.45 
TCGA-56-1622 TCGA-56-5897 TCGA-56-5898 TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 
       28.93         0.10        18.25         2.04         1.02         0.99 
TCGA-56-7223 TCGA-56-7580 TCGA-56-7730 TCGA-56-7822 TCGA-56-8503 TCGA-56-8504 
        0.99         1.32         0.20         0.03         1.35         5.82 
TCGA-56-8622 TCGA-56-8624 TCGA-56-8625 TCGA-56-8626 TCGA-56-8628 TCGA-56-8629 
        1.78         1.18         2.07         0.56         0.53         1.12 
TCGA-56-A49D TCGA-56-A4BX TCGA-56-A4BY TCGA-56-A4ZJ TCGA-56-A4ZK TCGA-56-A5DS 
        0.99         1.51         0.99         1.02         0.13         0.26 
TCGA-58-8386 TCGA-58-8387 TCGA-58-8388 TCGA-58-8390 TCGA-58-8392 TCGA-58-A46J 
        0.03        13.25        12.43        29.95        16.47        64.87 
TCGA-58-A46L TCGA-58-A46M TCGA-58-A46N TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 
       36.59        23.24        17.72        12.23        10.22        96.82 
TCGA-60-2704 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2712 TCGA-60-2713 
       37.94        21.70        80.42        49.48         9.01        56.91 
TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 TCGA-60-2720 TCGA-60-2721 TCGA-60-2723 
       50.33        35.34        48.49         3.16        32.28        35.90 
TCGA-60-2726 TCGA-66-2727 TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 
       11.77        16.96         2.01        21.07         0.99         1.02 
TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 
        0.92         0.99         0.99        20.98        25.02         0.99 
TCGA-66-2765 TCGA-66-2766 TCGA-66-2768 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 
        2.01         1.02         2.01         2.01        19.00        12.03 
TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 
        3.98        12.00        24.95         1.94        25.97        40.01 
TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 
       22.98         4.04        22.98         5.03        30.02        10.06 
TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-68-7756 TCGA-68-7757 TCGA-68-8250 
       54.08         4.01        49.05         6.64         6.94         8.02 
TCGA-68-8251 TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 
        3.12        29.56        73.08        75.09        23.28        11.18 
TCGA-77-7139 TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 TCGA-77-8007 
       89.95        42.25        70.09       106.95         0.16         6.51 
TCGA-77-8008 TCGA-77-8009 TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 TCGA-77-8138 
       86.76        53.95        37.81        82.92        12.59        17.69 
TCGA-77-8139 TCGA-77-8140 TCGA-77-8143 TCGA-77-8144 TCGA-77-8145 TCGA-77-8148 
      104.09        11.54        26.40        27.39         6.97         9.63 
TCGA-77-8153 TCGA-77-8154 TCGA-77-8156 TCGA-77-A5FZ TCGA-77-A5G3 TCGA-77-A5GB 
       55.33        35.90         0.33       126.18       117.57        30.81 
TCGA-77-A5GH TCGA-85-6560 TCGA-85-7696 TCGA-85-7697 TCGA-85-7698 TCGA-85-7699 
       23.44         0.36         0.59         0.33         1.61         0.03 
TCGA-85-7843 TCGA-85-8048 TCGA-85-8071 TCGA-85-8072 TCGA-85-8287 TCGA-85-8288 
        1.15         0.85        14.07         1.18         1.45         1.78 
TCGA-85-8350 TCGA-85-8353 TCGA-85-8355 TCGA-85-8479 TCGA-85-8580 TCGA-85-8582 
        1.97         1.78         0.66         0.72        14.60        13.91 
TCGA-85-8666 TCGA-85-A4CL TCGA-85-A4QR TCGA-85-A50M TCGA-85-A513 TCGA-85-A53L 
       15.58         0.46         0.82         0.62         0.79         0.43 
TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 TCGA-90-7964 TCGA-90-A4ED TCGA-90-A4EE 
       24.89         9.50         2.93        14.07         8.02        10.88 
TCGA-92-7340 TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 
        2.70         4.01         5.26         2.27         2.86         0.16 
TCGA-96-7544 TCGA-96-8169 TCGA-96-8170 TCGA-96-A4JK TCGA-96-A4JL TCGA-98-7454 
       39.88         6.18         6.90         8.98         6.02         8.42 
TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 TCGA-J1-A4AH TCGA-L3-A4E7 TCGA-MF-A522 
       13.58         7.33        10.13         7.30         1.15         3.02 
TCGA-NC-A5HG TCGA-NC-A5HI 
       50.86        37.32 

  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
              0.10               0.03 
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
            173.79             126.18 
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
             15.75              12.51 
[1] "0.1 - 173.8 (15.8)" "0.0 - 126.2 (12.5)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
  "15Q GAIN MUTATED"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED"   "15Q GAIN MUTATED" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
  "15Q GAIN MUTATED"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-22-A5C4         TCGA-33-4532         TCGA-33-4533 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-33-4538         TCGA-33-4547         TCGA-33-4566 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-33-4582         TCGA-33-4583         TCGA-33-4586 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-33-4587         TCGA-33-4589         TCGA-33-6737 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-33-6738         TCGA-34-2596         TCGA-34-2600 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-34-2604         TCGA-34-2605         TCGA-34-2608 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-34-2609         TCGA-34-5231         TCGA-34-5232 
  "15Q GAIN MUTATED"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-34-5234         TCGA-34-5236         TCGA-34-5239 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-34-5240         TCGA-34-5241         TCGA-34-5927 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-34-5928         TCGA-34-5929         TCGA-34-7107 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-3792 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4132 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-37-4133         TCGA-37-4135         TCGA-37-4141 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-37-5819         TCGA-39-5011         TCGA-39-5016 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-39-5019         TCGA-39-5021         TCGA-39-5022 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-39-5024         TCGA-39-5027         TCGA-39-5028 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-39-5029         TCGA-39-5030         TCGA-39-5031 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-39-5034         TCGA-39-5035         TCGA-39-5036 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-39-5037         TCGA-39-5039         TCGA-39-5040 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-43-8118 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-43-A474         TCGA-43-A475         TCGA-43-A56V 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-46-3768         TCGA-46-6025         TCGA-46-6026 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-51-4079         TCGA-51-4080         TCGA-51-4081 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-52-7622         TCGA-52-7809         TCGA-52-7810 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-52-7811         TCGA-52-7812         TCGA-56-1622 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-56-5897         TCGA-56-5898         TCGA-56-6545 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-56-6546         TCGA-56-7221         TCGA-56-7222 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-56-7223         TCGA-56-7579         TCGA-56-7580 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-56-7582         TCGA-56-7730         TCGA-56-7822 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-56-8503         TCGA-56-8504         TCGA-56-8622 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-56-8624         TCGA-56-8625         TCGA-56-8626 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-56-8628         TCGA-56-8629         TCGA-56-A49D 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-56-A4BX         TCGA-56-A4BY         TCGA-56-A4ZJ 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-56-A4ZK         TCGA-56-A5DS         TCGA-58-8386 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-58-8387         TCGA-58-8388         TCGA-58-8390 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-58-8391         TCGA-58-8392         TCGA-58-8393 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-58-A46J         TCGA-58-A46K         TCGA-58-A46L 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-58-A46M         TCGA-58-A46N         TCGA-60-2695 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-60-2696         TCGA-60-2697         TCGA-60-2698 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-60-2703         TCGA-60-2704         TCGA-60-2706 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
  "15Q GAIN MUTATED"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
  "15Q GAIN MUTATED"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2756 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-66-2770         TCGA-66-2771         TCGA-66-2773 
  "15Q GAIN MUTATED"   "15Q GAIN MUTATED"   "15Q GAIN MUTATED" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-66-2785         TCGA-66-2786         TCGA-66-2787 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-68-7755         TCGA-68-7756         TCGA-68-7757 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-68-8250         TCGA-68-8251         TCGA-77-6842 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-77-6843         TCGA-77-6844         TCGA-77-6845 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-77-7138         TCGA-77-7139         TCGA-77-7140 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-77-7141         TCGA-77-7142         TCGA-77-7335 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
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  "15Q GAIN MUTATED"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
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  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
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  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
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  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
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  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
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  "15Q GAIN MUTATED"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
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  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
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  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
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        TCGA-96-8169         TCGA-96-8170         TCGA-96-A4JK 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-96-A4JL         TCGA-98-7454         TCGA-98-8020 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-LA-A446         TCGA-MF-A522         TCGA-NC-A5HE 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D27V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  15Q GAIN MUTATED         0        8       28        0        14        18
  15Q GAIN WILD-TYPE       1       60      105        1        36        53
                    vv
clus                 STAGE IIIA STAGE IIIB STAGE IV
  15Q GAIN MUTATED           13          4        2
  15Q GAIN WILD-TYPE         41         16        3
D27V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  15Q GAIN MUTATED    15  58  12   3
  15Q GAIN WILD-TYPE  78 192  32  16
D27V4, multiclass
    clus
vv   15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  T1               15                 78
  T2               58                192
  T3               12                 32
  T4                3                 16
                    vv
clus                  N0  N1  N2  N3
  15Q GAIN MUTATED    48  33   5   1
  15Q GAIN WILD-TYPE 205  76  29   4
D27V5, multiclass
    clus
vv   15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  N0               48                205
  N1               33                 76
  N2                5                 29
  N3                1                  4
                    vv
clus                  M0  M1  MX
  15Q GAIN MUTATED    78   2   7
  15Q GAIN WILD-TYPE 270   3  40
D27V6, multiclass
    clus
vv   15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  M0               78                270
  M1                2                  3
  MX                7                 40
D27V7, binary
                    cls
clus                   0   1
  15Q GAIN MUTATED    19  69
  15Q GAIN WILD-TYPE  82 236
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  15Q GAIN MUTATED     19   69
  15Q GAIN WILD-TYPE   82  236
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  FEMALE               19                 82
  MALE                 69                236
D27V8, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  15Q GAIN MUTATED                                       3
  15Q GAIN WILD-TYPE                                     9
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  15Q GAIN MUTATED                                        1
  15Q GAIN WILD-TYPE                                      5
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  15Q GAIN MUTATED                                         0
  15Q GAIN WILD-TYPE                                       1
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  15Q GAIN MUTATED                                                            84
  15Q GAIN WILD-TYPE                                                         303
D27V9, multiclass
                                                             clus
vv                                                            15Q GAIN MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      3
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                     1
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                    0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               84
                                                             clus
vv                                                            15Q GAIN WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                        9
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                       5
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                      1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                303
D27V10, binary
                    cls
clus                   0   1
  15Q GAIN MUTATED     1  87
  15Q GAIN WILD-TYPE  11 307
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  15Q GAIN MUTATED      1   87
  15Q GAIN WILD-TYPE   11  307
     clus
vv    15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  NO                 1                 11
  YES               87                307
D27V11, continuous
D27V12, continuous
                    vv
clus                  R0  R1  R2  RX
  15Q GAIN MUTATED    75   2   0   4
  15Q GAIN WILD-TYPE 255   6   4  14
D27V13, multiclass
    clus
vv   15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  R0               75                255
  R1                2                  6
  R2                0                  4
  RX                4                 14

Clustering(28) Variable = 16P GAIN MUTATION ANALYSIS
D28V1, survival
                    sevent
clus2                  0   1
  16P GAIN MUTATED    35  26
  16P GAIN WILD-TYPE 204 112
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
                61                316 
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
                26                112 
$`16P GAIN MUTATED`
TCGA-18-3412 TCGA-18-3416 TCGA-18-5595 TCGA-21-1071 TCGA-21-1072 TCGA-21-1081 
       11.34        28.34        27.16        46.88        99.16         9.30 
TCGA-21-1083 TCGA-21-5783 TCGA-21-5787 TCGA-22-1011 TCGA-22-1017 TCGA-22-4593 
        8.78        88.08        10.82         1.74        48.82        35.08 
TCGA-33-4532 TCGA-33-4566 TCGA-33-4583 TCGA-33-4586 TCGA-33-4587 TCGA-34-2604 
        7.63       173.79       141.34        14.07        54.44        31.50 
TCGA-34-5240 TCGA-34-5241 TCGA-34-7107 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 
       12.00        14.07         1.08         6.81         0.39         3.39 
TCGA-39-5034 TCGA-39-5036 TCGA-43-2576 TCGA-43-2578 TCGA-43-5668 TCGA-43-A56V 
       36.39        35.64        40.21        22.49        11.47         5.06 
TCGA-52-7811 TCGA-56-1622 TCGA-56-6545 TCGA-56-7222 TCGA-56-7223 TCGA-56-8504 
        8.75        28.93         2.04         0.43         0.99         5.82 
TCGA-60-2706 TCGA-60-2722 TCGA-60-2725 TCGA-60-2726 TCGA-66-2737 TCGA-66-2756 
       92.71        29.85        26.79        11.77         2.01         0.99 
TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2791 TCGA-66-2793 TCGA-77-7465 
        2.01         2.01        23.01         5.03        10.06        15.75 
TCGA-77-8009 TCGA-77-8139 TCGA-77-8150 TCGA-85-6560 TCGA-85-7843 TCGA-85-8072 
       53.95       104.09        54.41         0.36         1.15         1.18 
TCGA-85-8276 TCGA-85-8287 TCGA-85-8350 TCGA-92-7341 TCGA-98-8020 TCGA-98-8022 
        0.43         1.45         1.97         3.48         2.73         7.33 
TCGA-J1-A4AH 
        7.30 

$`16P GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 
       13.02        59.51        24.92         1.61        43.76         6.15 
TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-21-1070 TCGA-21-1075 TCGA-21-1076 
        2.79        90.51         3.02       119.54        70.13        60.89 
TCGA-21-1077 TCGA-21-1078 TCGA-21-1079 TCGA-21-1080 TCGA-21-1082 TCGA-21-5782 
       34.78        15.55        31.69       122.43       119.80        31.63 
TCGA-21-5784 TCGA-21-5786 TCGA-21-A5DI TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 
       41.69        33.93        32.19        19.99         7.33        14.93 
TCGA-22-1002 TCGA-22-1005 TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4594 
        4.31        64.21        14.10        27.02        20.45        48.33 
TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4605 
       24.13         0.56        38.17        34.75        13.12        32.02 
TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       19.30         9.53        11.77        31.73        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 
       14.60        44.22         0.79        54.28        71.34        79.20 
TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 
       11.74        18.84        30.08        62.86        56.32        16.60 
TCGA-22-A5C4 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4582 TCGA-33-4589 
        0.95       114.05        97.94        43.10       103.53        10.98 
TCGA-33-6737 TCGA-33-6738 TCGA-34-2596 TCGA-34-2600 TCGA-34-2605 TCGA-34-2608 
       19.76        26.99         2.63        61.61        28.96        32.84 
TCGA-34-2609 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 
       31.23        50.24        67.79        56.38         9.04        23.24 
TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 
       30.94        18.12         4.96         3.95         0.43         0.39 
TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 TCGA-39-5011 TCGA-39-5016 
        6.54         8.09         7.46         7.82        47.80        74.07 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       44.71        68.58        55.17        70.03        60.76         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5037 TCGA-39-5039 
       24.33         1.94        27.35        15.58        35.70        17.88 
TCGA-39-5040 TCGA-43-2581 TCGA-43-3394 TCGA-43-3920 TCGA-43-5670 TCGA-43-6143 
       17.06        38.66        27.02        33.07        18.05        12.36 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 
       24.89        10.19         5.42         3.78         6.97         1.58 
TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 TCGA-43-8118 TCGA-43-A474 TCGA-43-A475 
       66.51         6.64         6.35         2.93        11.61         9.73 
TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 
        9.96        10.65        13.87         0.39         0.39        29.95 
TCGA-52-7622 TCGA-52-7809 TCGA-52-7810 TCGA-52-7812 TCGA-56-5897 TCGA-56-5898 
       17.79         5.42        30.31        27.45         0.10        18.25 
TCGA-56-6546 TCGA-56-7221 TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 TCGA-56-7730 
        1.02         0.99         1.45         1.32         0.85         0.20 
TCGA-56-7822 TCGA-56-8503 TCGA-56-8622 TCGA-56-8624 TCGA-56-8625 TCGA-56-8626 
        0.03         1.35         1.78         1.18         2.07         0.56 
TCGA-56-8628 TCGA-56-8629 TCGA-56-A49D TCGA-56-A4BX TCGA-56-A4BY TCGA-56-A4ZJ 
        0.53         1.12         0.99         1.51         0.99         1.02 
TCGA-56-A4ZK TCGA-56-A5DS TCGA-58-8386 TCGA-58-8387 TCGA-58-8388 TCGA-58-8390 
        0.13         0.26         0.03        13.25        12.43        29.95 
TCGA-58-8391 TCGA-58-8392 TCGA-58-8393 TCGA-58-A46J TCGA-58-A46K TCGA-58-A46L 
       71.24        16.47        34.78        64.87        34.36        36.59 
TCGA-58-A46M TCGA-58-A46N TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 
       23.24        17.72        21.07         3.58        12.23        10.22 
TCGA-60-2703 TCGA-60-2704 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 
       96.82        37.94        21.70        80.42        49.48        66.51 
TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 
       41.39         9.01        56.91        50.33        35.34        48.49 
TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2723 TCGA-60-2724 TCGA-66-2727 
       42.61         3.16        32.28        35.90        23.57        16.96 
TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 
       43.10        21.07         0.99         1.02         2.01         0.92 
TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 
        0.99        20.98        25.02         0.99         2.01         1.02 
TCGA-66-2769 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 
        7.07        19.00         3.02         2.01        19.00        12.03 
TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 
        3.98        12.00        24.95         1.94        25.97        40.01 
TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 TCGA-66-2792 TCGA-66-2794 TCGA-66-2795 
       22.98         4.04        22.98        30.02        54.08         4.01 
TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 TCGA-68-7757 TCGA-68-8250 TCGA-68-8251 
       49.05         2.73         6.64         6.94         8.02         3.12 
TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 
       29.56        73.08        75.09        23.28        11.18        89.95 
TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 
       20.78         0.49        42.25        70.09       106.95         0.16 
TCGA-77-7463 TCGA-77-8007 TCGA-77-8008 TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 
       46.78         6.51        86.76        37.81        82.92        12.59 
TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 TCGA-77-8140 TCGA-77-8143 TCGA-77-8144 
       53.92        39.09        17.69        11.54        26.40        27.39 
TCGA-77-8145 TCGA-77-8148 TCGA-77-8153 TCGA-77-8154 TCGA-77-8156 TCGA-77-A5FZ 
        6.97         9.63        55.33        35.90         0.33       126.18 
TCGA-77-A5G3 TCGA-77-A5GB TCGA-77-A5GH TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 
      117.57        30.81        23.44         0.79         1.12         0.59 
TCGA-85-7697 TCGA-85-7698 TCGA-85-7699 TCGA-85-7844 TCGA-85-7950 TCGA-85-8048 
        0.33         1.61         0.03         1.25         1.97         0.85 
TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 TCGA-85-8277 TCGA-85-8288 
        1.97         0.53        16.77        14.07         0.36         1.78 
TCGA-85-8351 TCGA-85-8352 TCGA-85-8353 TCGA-85-8354 TCGA-85-8355 TCGA-85-8479 
        1.81         2.20         1.78         2.01         0.66         0.72 
TCGA-85-8481 TCGA-85-8580 TCGA-85-8582 TCGA-85-8664 TCGA-85-8666 TCGA-85-A4CL 
        0.66        14.60        13.91         0.10        15.58         0.46 
TCGA-85-A4QR TCGA-85-A50M TCGA-85-A513 TCGA-85-A53L TCGA-90-6837 TCGA-90-7766 
        0.82         0.62         0.79         0.43        24.89         9.50 
TCGA-90-7767 TCGA-90-7769 TCGA-90-7964 TCGA-90-A4ED TCGA-90-A4EE TCGA-92-7340 
        2.93        11.77        14.07         8.02        10.88         2.70 
TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 TCGA-94-7943 
        4.01         5.26         2.27         2.86         0.16        11.70 
TCGA-96-7544 TCGA-96-7545 TCGA-96-8169 TCGA-96-8170 TCGA-96-A4JK TCGA-96-A4JL 
       39.88        44.15         6.18         6.90         8.98         6.02 
TCGA-98-7454 TCGA-98-8021 TCGA-98-8023 TCGA-L3-A4E7 TCGA-L3-A524 TCGA-LA-A446 
        8.42        13.58        10.13         1.15        14.76         1.18 
TCGA-MF-A522 TCGA-NC-A5HE TCGA-NC-A5HG TCGA-NC-A5HI 
        3.02        56.61        50.86        37.32 

  16P GAIN MUTATED 16P GAIN WILD-TYPE 
              0.36               0.03 
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
            173.79             126.18 
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
            10.820             14.085 
[1] "0.4 - 173.8 (10.8)" "0.0 - 126.2 (14.1)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-A5C4         TCGA-33-4532         TCGA-33-4533 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-33-4538         TCGA-33-4547         TCGA-33-4566 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-33-4582         TCGA-33-4583         TCGA-33-4586 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-33-4587         TCGA-33-4589         TCGA-33-6737 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-33-6738         TCGA-34-2596         TCGA-34-2600 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-34-2604         TCGA-34-2605         TCGA-34-2608 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-34-2609         TCGA-34-5231         TCGA-34-5232 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-34-5234         TCGA-34-5236         TCGA-34-5239 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-34-5240         TCGA-34-5241         TCGA-34-5927 
  "16P GAIN MUTATED"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-34-5928         TCGA-34-5929         TCGA-34-7107 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-3792 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4132 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-37-4133         TCGA-37-4135         TCGA-37-4141 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-37-5819         TCGA-39-5011         TCGA-39-5016 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-39-5019         TCGA-39-5021         TCGA-39-5022 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-39-5024         TCGA-39-5027         TCGA-39-5028 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-39-5029         TCGA-39-5030         TCGA-39-5031 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-39-5034         TCGA-39-5035         TCGA-39-5036 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-39-5037         TCGA-39-5039         TCGA-39-5040 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
  "16P GAIN MUTATED"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-43-8118 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-43-A474         TCGA-43-A475         TCGA-43-A56V 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-46-3768         TCGA-46-6025         TCGA-46-6026 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-51-4079         TCGA-51-4080         TCGA-51-4081 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-52-7622         TCGA-52-7809         TCGA-52-7810 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-52-7811         TCGA-52-7812         TCGA-56-1622 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-56-5897         TCGA-56-5898         TCGA-56-6545 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-56-6546         TCGA-56-7221         TCGA-56-7222 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-56-7223         TCGA-56-7579         TCGA-56-7580 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-56-7582         TCGA-56-7730         TCGA-56-7822 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-56-8503         TCGA-56-8504         TCGA-56-8622 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-56-8624         TCGA-56-8625         TCGA-56-8626 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-56-8628         TCGA-56-8629         TCGA-56-A49D 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-56-A4BX         TCGA-56-A4BY         TCGA-56-A4ZJ 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-56-A4ZK         TCGA-56-A5DS         TCGA-58-8386 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-58-8387         TCGA-58-8388         TCGA-58-8390 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-58-8391         TCGA-58-8392         TCGA-58-8393 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-58-A46J         TCGA-58-A46K         TCGA-58-A46L 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-58-A46M         TCGA-58-A46N         TCGA-60-2695 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-60-2696         TCGA-60-2697         TCGA-60-2698 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-60-2703         TCGA-60-2704         TCGA-60-2706 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2756 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
  "16P GAIN MUTATED"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-66-2770         TCGA-66-2771         TCGA-66-2773 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2785         TCGA-66-2786         TCGA-66-2787 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-68-7755         TCGA-68-7756         TCGA-68-7757 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-68-8250         TCGA-68-8251         TCGA-77-6842 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-77-6843         TCGA-77-6844         TCGA-77-6845 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-77-7138         TCGA-77-7139         TCGA-77-7140 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-77-7141         TCGA-77-7142         TCGA-77-7335 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-77-7337         TCGA-77-7338         TCGA-77-7463 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-77-7465         TCGA-77-8007         TCGA-77-8008 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-77-8009         TCGA-77-8128         TCGA-77-8130 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-77-8131         TCGA-77-8133         TCGA-77-8136 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-77-8138         TCGA-77-8139         TCGA-77-8140 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-77-8143         TCGA-77-8144         TCGA-77-8145 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-77-8148         TCGA-77-8150         TCGA-77-8153 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-77-8154         TCGA-77-8156         TCGA-77-A5FZ 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-77-A5G3         TCGA-77-A5GB         TCGA-77-A5GH 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
  "16P GAIN MUTATED"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-96-8169         TCGA-96-8170         TCGA-96-A4JK 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-96-A4JL         TCGA-98-7454         TCGA-98-8020 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-LA-A446         TCGA-MF-A522         TCGA-NC-A5HE 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-A5C4         TCGA-33-4532         TCGA-33-4533 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-33-4538         TCGA-33-4547         TCGA-33-4566 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-33-4582         TCGA-33-4583         TCGA-33-4586 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-33-4587         TCGA-33-4589         TCGA-33-6737 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-33-6738         TCGA-34-2596         TCGA-34-2600 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-34-2604         TCGA-34-2605         TCGA-34-2608 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-34-2609         TCGA-34-5231         TCGA-34-5232 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-34-5234         TCGA-34-5236         TCGA-34-5239 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-34-5240         TCGA-34-5241         TCGA-34-5927 
  "16P GAIN MUTATED"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-34-5928         TCGA-34-5929         TCGA-34-7107 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-3792 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4132 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-37-4133         TCGA-37-4135         TCGA-37-4141 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-37-5819         TCGA-39-5011         TCGA-39-5016 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-39-5019         TCGA-39-5021         TCGA-39-5022 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-39-5024         TCGA-39-5027         TCGA-39-5028 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-39-5029         TCGA-39-5030         TCGA-39-5031 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-39-5034         TCGA-39-5035         TCGA-39-5036 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-39-5037         TCGA-39-5039         TCGA-39-5040 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
  "16P GAIN MUTATED"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-43-8118 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-43-A474         TCGA-43-A475         TCGA-43-A56V 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-46-3768         TCGA-46-6025         TCGA-46-6026 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-51-4079         TCGA-51-4080         TCGA-51-4081 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-52-7622         TCGA-52-7809         TCGA-52-7810 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-52-7811         TCGA-52-7812         TCGA-56-1622 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-56-5897         TCGA-56-5898         TCGA-56-6545 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-56-6546         TCGA-56-7221         TCGA-56-7222 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-56-7223         TCGA-56-7579         TCGA-56-7580 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-56-7582         TCGA-56-7730         TCGA-56-7822 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-56-8503         TCGA-56-8504         TCGA-56-8622 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-56-8624         TCGA-56-8625         TCGA-56-8626 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-56-8628         TCGA-56-8629         TCGA-56-A49D 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-56-A4BX         TCGA-56-A4BY         TCGA-56-A4ZJ 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-56-A4ZK         TCGA-56-A5DS         TCGA-58-8386 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-58-8387         TCGA-58-8388         TCGA-58-8390 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-58-8391         TCGA-58-8392         TCGA-58-8393 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-58-A46J         TCGA-58-A46K         TCGA-58-A46L 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-58-A46M         TCGA-58-A46N         TCGA-60-2695 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-60-2696         TCGA-60-2697         TCGA-60-2698 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-60-2703         TCGA-60-2704         TCGA-60-2706 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2756 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
  "16P GAIN MUTATED"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-66-2770         TCGA-66-2771         TCGA-66-2773 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2785         TCGA-66-2786         TCGA-66-2787 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-68-7755         TCGA-68-7756         TCGA-68-7757 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-68-8250         TCGA-68-8251         TCGA-77-6842 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-77-6843         TCGA-77-6844         TCGA-77-6845 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-77-7138         TCGA-77-7139         TCGA-77-7140 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-77-7141         TCGA-77-7142         TCGA-77-7335 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-77-7337         TCGA-77-7338         TCGA-77-7463 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-77-7465         TCGA-77-8007         TCGA-77-8008 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-77-8009         TCGA-77-8128         TCGA-77-8130 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-77-8131         TCGA-77-8133         TCGA-77-8136 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-77-8138         TCGA-77-8139         TCGA-77-8140 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-77-8143         TCGA-77-8144         TCGA-77-8145 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-77-8148         TCGA-77-8150         TCGA-77-8153 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-77-8154         TCGA-77-8156         TCGA-77-A5FZ 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-77-A5G3         TCGA-77-A5GB         TCGA-77-A5GH 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
  "16P GAIN MUTATED"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-96-8169         TCGA-96-8170         TCGA-96-A4JK 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-96-A4JL         TCGA-98-7454         TCGA-98-8020 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-LA-A446         TCGA-MF-A522         TCGA-NC-A5HE 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-A5C4         TCGA-33-4532         TCGA-33-4533 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-33-4538         TCGA-33-4547         TCGA-33-4566 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-33-4582         TCGA-33-4583         TCGA-33-4586 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-33-4587         TCGA-33-4589         TCGA-33-6737 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-33-6738         TCGA-34-2596         TCGA-34-2600 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-34-2604         TCGA-34-2605         TCGA-34-2608 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-34-2609         TCGA-34-5231         TCGA-34-5232 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-34-5234         TCGA-34-5236         TCGA-34-5239 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-34-5240         TCGA-34-5241         TCGA-34-5927 
  "16P GAIN MUTATED"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-34-5928         TCGA-34-5929         TCGA-34-7107 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-3792 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4132 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-37-4133         TCGA-37-4135         TCGA-37-4141 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-37-5819         TCGA-39-5011         TCGA-39-5016 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-39-5019         TCGA-39-5021         TCGA-39-5022 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-39-5024         TCGA-39-5027         TCGA-39-5028 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-39-5029         TCGA-39-5030         TCGA-39-5031 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-39-5034         TCGA-39-5035         TCGA-39-5036 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-39-5037         TCGA-39-5039         TCGA-39-5040 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
  "16P GAIN MUTATED"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-43-8118 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-43-A474         TCGA-43-A475         TCGA-43-A56V 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-46-3768         TCGA-46-6025         TCGA-46-6026 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-51-4079         TCGA-51-4080         TCGA-51-4081 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-52-7622         TCGA-52-7809         TCGA-52-7810 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-52-7811         TCGA-52-7812         TCGA-56-1622 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-56-5897         TCGA-56-5898         TCGA-56-6545 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-56-6546         TCGA-56-7221         TCGA-56-7222 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-56-7223         TCGA-56-7579         TCGA-56-7580 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-56-7582         TCGA-56-7730         TCGA-56-7822 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-56-8503         TCGA-56-8504         TCGA-56-8622 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-56-8624         TCGA-56-8625         TCGA-56-8626 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-56-8628         TCGA-56-8629         TCGA-56-A49D 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-56-A4BX         TCGA-56-A4BY         TCGA-56-A4ZJ 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-56-A4ZK         TCGA-56-A5DS         TCGA-58-8386 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-58-8387         TCGA-58-8388         TCGA-58-8390 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-58-8391         TCGA-58-8392         TCGA-58-8393 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-58-A46J         TCGA-58-A46K         TCGA-58-A46L 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-58-A46M         TCGA-58-A46N         TCGA-60-2695 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-60-2696         TCGA-60-2697         TCGA-60-2698 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-60-2703         TCGA-60-2704         TCGA-60-2706 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2756 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
  "16P GAIN MUTATED"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-66-2770         TCGA-66-2771         TCGA-66-2773 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2785         TCGA-66-2786         TCGA-66-2787 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-68-7755         TCGA-68-7756         TCGA-68-7757 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-68-8250         TCGA-68-8251         TCGA-77-6842 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-77-6843         TCGA-77-6844         TCGA-77-6845 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-77-7138         TCGA-77-7139         TCGA-77-7140 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-77-7141         TCGA-77-7142         TCGA-77-7335 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-77-7337         TCGA-77-7338         TCGA-77-7463 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-77-7465         TCGA-77-8007         TCGA-77-8008 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-77-8009         TCGA-77-8128         TCGA-77-8130 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-77-8131         TCGA-77-8133         TCGA-77-8136 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-77-8138         TCGA-77-8139         TCGA-77-8140 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-77-8143         TCGA-77-8144         TCGA-77-8145 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-77-8148         TCGA-77-8150         TCGA-77-8153 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-77-8154         TCGA-77-8156         TCGA-77-A5FZ 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-77-A5G3         TCGA-77-A5GB         TCGA-77-A5GH 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
  "16P GAIN MUTATED"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-96-8169         TCGA-96-8170         TCGA-96-A4JK 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-96-A4JL         TCGA-98-7454         TCGA-98-8020 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-LA-A446         TCGA-MF-A522         TCGA-NC-A5HE 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D28V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  16P GAIN MUTATED         0       11       19        1         9        12
  16P GAIN WILD-TYPE       1       57      114        0        41        59
                    vv
clus                 STAGE IIIA STAGE IIIB STAGE IV
  16P GAIN MUTATED           10          5        0
  16P GAIN WILD-TYPE         44         15        5
D28V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  16P GAIN MUTATED    13  45   8   2
  16P GAIN WILD-TYPE  80 205  36  17
D28V4, multiclass
    clus
vv   16P GAIN MUTATED 16P GAIN WILD-TYPE
  T1               13                 80
  T2               45                205
  T3                8                 36
  T4                2                 17
                    vv
clus                  N0  N1  N2  N3
  16P GAIN MUTATED    41  19   6   2
  16P GAIN WILD-TYPE 212  90  28   3
D28V5, multiclass
    clus
vv   16P GAIN MUTATED 16P GAIN WILD-TYPE
  N0               41                212
  N1               19                 90
  N2                6                 28
  N3                2                  3
                    vv
clus                  M0  M1  MX
  16P GAIN MUTATED    62   0   5
  16P GAIN WILD-TYPE 286   5  42
D28V6, multiclass
    clus
vv   16P GAIN MUTATED 16P GAIN WILD-TYPE
  M0               62                286
  M1                0                  5
  MX                5                 42
D28V7, binary
                    cls
clus                   0   1
  16P GAIN MUTATED    11  57
  16P GAIN WILD-TYPE  90 248
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16P GAIN MUTATED     11   57
  16P GAIN WILD-TYPE   90  248
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  FEMALE               11                 90
  MALE                 57                248
D28V8, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  16P GAIN MUTATED                                       1
  16P GAIN WILD-TYPE                                    11
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  16P GAIN MUTATED                                        1
  16P GAIN WILD-TYPE                                      5
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  16P GAIN MUTATED                                         1
  16P GAIN WILD-TYPE                                       0
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  16P GAIN MUTATED                                                            65
  16P GAIN WILD-TYPE                                                         322
D28V9, multiclass
                                                             clus
vv                                                            16P GAIN MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      1
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                     1
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               65
                                                             clus
vv                                                            16P GAIN WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       11
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                       5
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                      0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                322
D28V10, binary
                    cls
clus                   0   1
  16P GAIN MUTATED     2  66
  16P GAIN WILD-TYPE  10 328
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16P GAIN MUTATED      2   66
  16P GAIN WILD-TYPE   10  328
     clus
vv    16P GAIN MUTATED 16P GAIN WILD-TYPE
  NO                 2                 10
  YES               66                328
D28V11, continuous
D28V12, continuous
                    vv
clus                  R0  R1  R2  RX
  16P GAIN MUTATED    57   1   0   2
  16P GAIN WILD-TYPE 273   7   4  16
D28V13, multiclass
    clus
vv   16P GAIN MUTATED 16P GAIN WILD-TYPE
  R0               57                273
  R1                1                  7
  R2                0                  4
  RX                2                 16

Clustering(29) Variable = 16Q GAIN MUTATION ANALYSIS
D29V1, survival
                    sevent
clus2                  0   1
  16Q GAIN MUTATED    39  22
  16Q GAIN WILD-TYPE 200 116
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                61                316 
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                22                116 
$`16Q GAIN MUTATED`
TCGA-18-3412 TCGA-18-3414 TCGA-18-3416 TCGA-18-5595 TCGA-21-1071 TCGA-21-1072 
       11.34        13.02        28.34        27.16        46.88        99.16 
TCGA-21-1079 TCGA-21-5783 TCGA-21-5786 TCGA-21-5787 TCGA-22-1011 TCGA-22-1017 
       31.69        88.08        33.93        10.82         1.74        48.82 
TCGA-22-4593 TCGA-33-4532 TCGA-33-4566 TCGA-33-4583 TCGA-33-4587 TCGA-34-5241 
       35.08         7.63       173.79       141.34        54.44        14.07 
TCGA-34-7107 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-39-5036 TCGA-39-5037 
        1.08         7.82         6.81         0.39        35.64        35.70 
TCGA-43-2576 TCGA-43-5668 TCGA-43-6143 TCGA-43-A475 TCGA-43-A56V TCGA-52-7811 
       40.21        11.47        12.36         9.73         5.06         8.75 
TCGA-56-1622 TCGA-56-6545 TCGA-56-7223 TCGA-56-8504 TCGA-58-A46K TCGA-60-2706 
       28.93         2.04         0.99         5.82        34.36        92.71 
TCGA-60-2708 TCGA-60-2722 TCGA-60-2725 TCGA-60-2726 TCGA-66-2737 TCGA-66-2756 
       80.42        29.85        26.79        11.77         2.01         0.99 
TCGA-66-2768 TCGA-66-2781 TCGA-66-2791 TCGA-77-7465 TCGA-77-8009 TCGA-85-6560 
        2.01         3.98         5.03        15.75        53.95         0.36 
TCGA-85-7843 TCGA-85-8072 TCGA-85-8276 TCGA-85-8277 TCGA-85-8287 TCGA-85-8350 
        1.15         1.18         0.43         0.36         1.45         1.97 
TCGA-85-8352 TCGA-85-A53L TCGA-92-7341 TCGA-98-8020 TCGA-98-8022 TCGA-J1-A4AH 
        2.20         0.43         3.48         2.73         7.33         7.30 
TCGA-LA-A446 
        1.18 

$`16Q GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3415 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 
       59.51        24.92         1.61        43.76         6.15         2.79 
TCGA-18-4721 TCGA-18-5592 TCGA-21-1070 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 
       90.51         3.02       119.54        70.13        60.89        34.78 
TCGA-21-1078 TCGA-21-1080 TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 
       15.55       122.43         9.30       119.80         8.78        31.63 
TCGA-21-5784 TCGA-21-A5DI TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 
       41.69        32.19        19.99         7.33        14.93         4.31 
TCGA-22-1005 TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4594 TCGA-22-4595 
       64.21        14.10        27.02        20.45        48.33        24.13 
TCGA-22-4596 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 
        0.56        38.17        34.75        13.12        32.02        19.30 
TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 
        9.53        11.77        31.73        64.90        63.52        14.60 
TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 TCGA-22-5482 
       44.22         0.79        54.28        71.34        79.20        11.74 
TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-22-A5C4 
       18.84        30.08        62.86        56.32        16.60         0.95 
TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4582 TCGA-33-4586 TCGA-33-4589 
      114.05        97.94        43.10       103.53        14.07        10.98 
TCGA-33-6737 TCGA-33-6738 TCGA-34-2596 TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 
       19.76        26.99         2.63        61.61        31.50        28.96 
TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 
       32.84        31.23        50.24        67.79        56.38         9.04 
TCGA-34-5239 TCGA-34-5240 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 
       23.24        12.00        30.94        18.12         4.96         3.95 
TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 TCGA-37-5819 
        0.43         0.39         6.54         8.09         7.46         3.39 
TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 
       47.80        74.07        44.71        68.58        55.17        70.03 
TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 
       60.76         1.71        24.33         1.94        27.35        36.39 
TCGA-39-5035 TCGA-39-5039 TCGA-39-5040 TCGA-43-2578 TCGA-43-2581 TCGA-43-3394 
       15.58        17.88        17.06        22.49        38.66        27.02 
TCGA-43-3920 TCGA-43-5670 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 
       33.07        18.05        24.89        10.19         5.42         3.78 
TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 TCGA-43-8118 
        6.97         1.58        66.51         6.64         6.35         2.93 
TCGA-43-A474 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 
       11.61         9.96        10.65        13.87         0.39         0.39 
TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 TCGA-52-7810 TCGA-52-7812 TCGA-56-5897 
       29.95        17.79         5.42        30.31        27.45         0.10 
TCGA-56-5898 TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 TCGA-56-7579 TCGA-56-7580 
       18.25         1.02         0.99         0.43         1.45         1.32 
TCGA-56-7582 TCGA-56-7730 TCGA-56-7822 TCGA-56-8503 TCGA-56-8622 TCGA-56-8624 
        0.85         0.20         0.03         1.35         1.78         1.18 
TCGA-56-8625 TCGA-56-8626 TCGA-56-8628 TCGA-56-8629 TCGA-56-A49D TCGA-56-A4BX 
        2.07         0.56         0.53         1.12         0.99         1.51 
TCGA-56-A4BY TCGA-56-A4ZJ TCGA-56-A4ZK TCGA-56-A5DS TCGA-58-8386 TCGA-58-8387 
        0.99         1.02         0.13         0.26         0.03        13.25 
TCGA-58-8388 TCGA-58-8390 TCGA-58-8391 TCGA-58-8392 TCGA-58-8393 TCGA-58-A46J 
       12.43        29.95        71.24        16.47        34.78        64.87 
TCGA-58-A46L TCGA-58-A46M TCGA-58-A46N TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 
       36.59        23.24        17.72        21.07         3.58        12.23 
TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 TCGA-60-2707 TCGA-60-2709 TCGA-60-2710 
       10.22        96.82        37.94        21.70        49.48        66.51 
TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 
       41.39         9.01        56.91        50.33        35.34        48.49 
TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2723 TCGA-60-2724 TCGA-66-2727 
       42.61         3.16        32.28        35.90        23.57        16.96 
TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 
       43.10        21.07         0.99         1.02         2.01         0.92 
TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 
        0.99        20.98        25.02         0.99         2.01         1.02 
TCGA-66-2767 TCGA-66-2769 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 
        2.01         7.07        23.01        19.00         3.02         2.01 
TCGA-66-2778 TCGA-66-2780 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 
       19.00        12.03        12.00        24.95         1.94        25.97 
TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 TCGA-66-2792 TCGA-66-2793 
       40.01        22.98         4.04        22.98        30.02        10.06 
TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 TCGA-68-7757 
       54.08         4.01        49.05         2.73         6.64         6.94 
TCGA-68-8250 TCGA-68-8251 TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 
        8.02         3.12        29.56        73.08        75.09        23.28 
TCGA-77-7138 TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 
       11.18        89.95        20.78         0.49        42.25        70.09 
TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 TCGA-77-8007 TCGA-77-8008 TCGA-77-8128 
      106.95         0.16        46.78         6.51        86.76        37.81 
TCGA-77-8130 TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 
       82.92        12.59        53.92        39.09        17.69       104.09 
TCGA-77-8140 TCGA-77-8143 TCGA-77-8144 TCGA-77-8145 TCGA-77-8148 TCGA-77-8150 
       11.54        26.40        27.39         6.97         9.63        54.41 
TCGA-77-8153 TCGA-77-8154 TCGA-77-8156 TCGA-77-A5FZ TCGA-77-A5G3 TCGA-77-A5GB 
       55.33        35.90         0.33       126.18       117.57        30.81 
TCGA-77-A5GH TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 TCGA-85-7697 TCGA-85-7698 
       23.44         0.79         1.12         0.59         0.33         1.61 
TCGA-85-7699 TCGA-85-7844 TCGA-85-7950 TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 
        0.03         1.25         1.97         0.85         1.97         0.53 
TCGA-85-8070 TCGA-85-8071 TCGA-85-8288 TCGA-85-8351 TCGA-85-8353 TCGA-85-8354 
       16.77        14.07         1.78         1.81         1.78         2.01 
TCGA-85-8355 TCGA-85-8479 TCGA-85-8481 TCGA-85-8580 TCGA-85-8582 TCGA-85-8664 
        0.66         0.72         0.66        14.60        13.91         0.10 
TCGA-85-8666 TCGA-85-A4CL TCGA-85-A4QR TCGA-85-A50M TCGA-85-A513 TCGA-90-6837 
       15.58         0.46         0.82         0.62         0.79        24.89 
TCGA-90-7766 TCGA-90-7767 TCGA-90-7769 TCGA-90-7964 TCGA-90-A4ED TCGA-90-A4EE 
        9.50         2.93        11.77        14.07         8.02        10.88 
TCGA-92-7340 TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 
        2.70         4.01         5.26         2.27         2.86         0.16 
TCGA-94-7943 TCGA-96-7544 TCGA-96-7545 TCGA-96-8169 TCGA-96-8170 TCGA-96-A4JK 
       11.70        39.88        44.15         6.18         6.90         8.98 
TCGA-96-A4JL TCGA-98-7454 TCGA-98-8021 TCGA-98-8023 TCGA-L3-A4E7 TCGA-L3-A524 
        6.02         8.42        13.58        10.13         1.15        14.76 
TCGA-MF-A522 TCGA-NC-A5HE TCGA-NC-A5HG TCGA-NC-A5HI 
        3.02        56.61        50.86        37.32 

  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
              0.36               0.03 
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
            173.79             126.18 
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
              9.73              14.35 
[1] "0.4 - 173.8 (9.7)"  "0.0 - 126.2 (14.3)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
  "16Q GAIN MUTATED"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
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"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED"   "16Q GAIN MUTATED" 
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"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
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        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
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  "16Q GAIN MUTATED"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
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"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-22-A5C4         TCGA-33-4532         TCGA-33-4533 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-33-4538         TCGA-33-4547         TCGA-33-4566 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-33-4582         TCGA-33-4583         TCGA-33-4586 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-33-4587         TCGA-33-4589         TCGA-33-6737 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-33-6738         TCGA-34-2596         TCGA-34-2600 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-34-2604         TCGA-34-2605         TCGA-34-2608 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-34-2609         TCGA-34-5231         TCGA-34-5232 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-34-5234         TCGA-34-5236         TCGA-34-5239 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-34-5240         TCGA-34-5241         TCGA-34-5927 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-34-5928         TCGA-34-5929         TCGA-34-7107 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-3792 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4132 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-37-4133         TCGA-37-4135         TCGA-37-4141 
  "16Q GAIN MUTATED"   "16Q GAIN MUTATED"   "16Q GAIN MUTATED" 
        TCGA-37-5819         TCGA-39-5011         TCGA-39-5016 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-39-5019         TCGA-39-5021         TCGA-39-5022 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-39-5024         TCGA-39-5027         TCGA-39-5028 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-39-5029         TCGA-39-5030         TCGA-39-5031 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-39-5034         TCGA-39-5035         TCGA-39-5036 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-39-5037         TCGA-39-5039         TCGA-39-5040 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-43-8118 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-43-A474         TCGA-43-A475         TCGA-43-A56V 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED"   "16Q GAIN MUTATED" 
        TCGA-46-3768         TCGA-46-6025         TCGA-46-6026 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-51-4079         TCGA-51-4080         TCGA-51-4081 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-52-7622         TCGA-52-7809         TCGA-52-7810 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-52-7811         TCGA-52-7812         TCGA-56-1622 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-56-5897         TCGA-56-5898         TCGA-56-6545 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-56-6546         TCGA-56-7221         TCGA-56-7222 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-56-7223         TCGA-56-7579         TCGA-56-7580 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-56-7582         TCGA-56-7730         TCGA-56-7822 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-56-8503         TCGA-56-8504         TCGA-56-8622 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-56-8624         TCGA-56-8625         TCGA-56-8626 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-56-8628         TCGA-56-8629         TCGA-56-A49D 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-56-A4BX         TCGA-56-A4BY         TCGA-56-A4ZJ 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-56-A4ZK         TCGA-56-A5DS         TCGA-58-8386 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-58-8387         TCGA-58-8388         TCGA-58-8390 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-58-8391         TCGA-58-8392         TCGA-58-8393 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-58-A46J         TCGA-58-A46K         TCGA-58-A46L 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-58-A46M         TCGA-58-A46N         TCGA-60-2695 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-60-2696         TCGA-60-2697         TCGA-60-2698 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-60-2703         TCGA-60-2704         TCGA-60-2706 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED"   "16Q GAIN MUTATED" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2756 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-66-2770         TCGA-66-2771         TCGA-66-2773 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-66-2785         TCGA-66-2786         TCGA-66-2787 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-68-7755         TCGA-68-7756         TCGA-68-7757 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-68-8250         TCGA-68-8251         TCGA-77-6842 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-77-6843         TCGA-77-6844         TCGA-77-6845 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-77-7138         TCGA-77-7139         TCGA-77-7140 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
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"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-77-7337         TCGA-77-7338         TCGA-77-7463 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-77-7465         TCGA-77-8007         TCGA-77-8008 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-77-8009         TCGA-77-8128         TCGA-77-8130 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-77-8131         TCGA-77-8133         TCGA-77-8136 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-77-8138         TCGA-77-8139         TCGA-77-8140 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-77-8143         TCGA-77-8144         TCGA-77-8145 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-77-8148         TCGA-77-8150         TCGA-77-8153 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-77-8154         TCGA-77-8156         TCGA-77-A5FZ 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-77-A5G3         TCGA-77-A5GB         TCGA-77-A5GH 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
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"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
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  "16Q GAIN MUTATED"   "16Q GAIN MUTATED"   "16Q GAIN MUTATED" 
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  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
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"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
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  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
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  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
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"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
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"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
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  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
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"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
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"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
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  "16Q GAIN MUTATED"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
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  "16Q GAIN MUTATED"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
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"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
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  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
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  "16Q GAIN MUTATED"   "16Q GAIN MUTATED"   "16Q GAIN MUTATED" 
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  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
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"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED"   "16Q GAIN MUTATED" 
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"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
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  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
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  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
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"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
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"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
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"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
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"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
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  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
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  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
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        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-96-8169         TCGA-96-8170         TCGA-96-A4JK 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-96-A4JL         TCGA-98-7454         TCGA-98-8020 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-LA-A446         TCGA-MF-A522         TCGA-NC-A5HE 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
  "16Q GAIN MUTATED"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED"   "16Q GAIN MUTATED" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
  "16Q GAIN MUTATED"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-22-A5C4         TCGA-33-4532         TCGA-33-4533 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-33-4538         TCGA-33-4547         TCGA-33-4566 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-33-4582         TCGA-33-4583         TCGA-33-4586 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-33-4587         TCGA-33-4589         TCGA-33-6737 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-33-6738         TCGA-34-2596         TCGA-34-2600 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-34-2604         TCGA-34-2605         TCGA-34-2608 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-34-2609         TCGA-34-5231         TCGA-34-5232 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-34-5234         TCGA-34-5236         TCGA-34-5239 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-34-5240         TCGA-34-5241         TCGA-34-5927 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-34-5928         TCGA-34-5929         TCGA-34-7107 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-3792 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4132 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-37-4133         TCGA-37-4135         TCGA-37-4141 
  "16Q GAIN MUTATED"   "16Q GAIN MUTATED"   "16Q GAIN MUTATED" 
        TCGA-37-5819         TCGA-39-5011         TCGA-39-5016 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-39-5019         TCGA-39-5021         TCGA-39-5022 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-39-5024         TCGA-39-5027         TCGA-39-5028 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-39-5029         TCGA-39-5030         TCGA-39-5031 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-39-5034         TCGA-39-5035         TCGA-39-5036 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-39-5037         TCGA-39-5039         TCGA-39-5040 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-43-8118 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-43-A474         TCGA-43-A475         TCGA-43-A56V 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED"   "16Q GAIN MUTATED" 
        TCGA-46-3768         TCGA-46-6025         TCGA-46-6026 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-51-4079         TCGA-51-4080         TCGA-51-4081 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-52-7622         TCGA-52-7809         TCGA-52-7810 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-52-7811         TCGA-52-7812         TCGA-56-1622 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-56-5897         TCGA-56-5898         TCGA-56-6545 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-56-6546         TCGA-56-7221         TCGA-56-7222 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-56-7223         TCGA-56-7579         TCGA-56-7580 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-56-7582         TCGA-56-7730         TCGA-56-7822 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-56-8503         TCGA-56-8504         TCGA-56-8622 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-56-8624         TCGA-56-8625         TCGA-56-8626 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-56-8628         TCGA-56-8629         TCGA-56-A49D 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-56-A4BX         TCGA-56-A4BY         TCGA-56-A4ZJ 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-56-A4ZK         TCGA-56-A5DS         TCGA-58-8386 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-58-8387         TCGA-58-8388         TCGA-58-8390 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-58-8391         TCGA-58-8392         TCGA-58-8393 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-58-A46J         TCGA-58-A46K         TCGA-58-A46L 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-58-A46M         TCGA-58-A46N         TCGA-60-2695 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-60-2696         TCGA-60-2697         TCGA-60-2698 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-60-2703         TCGA-60-2704         TCGA-60-2706 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED"   "16Q GAIN MUTATED" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2756 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-66-2770         TCGA-66-2771         TCGA-66-2773 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-66-2785         TCGA-66-2786         TCGA-66-2787 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-68-7755         TCGA-68-7756         TCGA-68-7757 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-68-8250         TCGA-68-8251         TCGA-77-6842 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-77-6843         TCGA-77-6844         TCGA-77-6845 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-77-7138         TCGA-77-7139         TCGA-77-7140 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-77-7141         TCGA-77-7142         TCGA-77-7335 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-77-7337         TCGA-77-7338         TCGA-77-7463 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-77-7465         TCGA-77-8007         TCGA-77-8008 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-77-8009         TCGA-77-8128         TCGA-77-8130 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-77-8131         TCGA-77-8133         TCGA-77-8136 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-77-8138         TCGA-77-8139         TCGA-77-8140 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-77-8143         TCGA-77-8144         TCGA-77-8145 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-77-8148         TCGA-77-8150         TCGA-77-8153 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-77-8154         TCGA-77-8156         TCGA-77-A5FZ 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-77-A5G3         TCGA-77-A5GB         TCGA-77-A5GH 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
  "16Q GAIN MUTATED"   "16Q GAIN MUTATED"   "16Q GAIN MUTATED" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-96-8169         TCGA-96-8170         TCGA-96-A4JK 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-96-A4JL         TCGA-98-7454         TCGA-98-8020 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-LA-A446         TCGA-MF-A522         TCGA-NC-A5HE 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
[1] "hr=" "1"  
D29V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  16Q GAIN MUTATED         0       10       20        1        11        11
  16Q GAIN WILD-TYPE       1       58      113        0        39        60
                    vv
clus                 STAGE IIIA STAGE IIIB STAGE IV
  16Q GAIN MUTATED           11          4        1
  16Q GAIN WILD-TYPE         43         16        4
D29V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  16Q GAIN MUTATED    13  44   8   4
  16Q GAIN WILD-TYPE  80 206  36  15
D29V4, multiclass
    clus
vv   16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  T1               13                 80
  T2               44                206
  T3                8                 36
  T4                4                 15
                    vv
clus                  N0  N1  N2  N3
  16Q GAIN MUTATED    42  21   5   1
  16Q GAIN WILD-TYPE 211  88  29   4
D29V5, multiclass
    clus
vv   16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  N0               42                211
  N1               21                 88
  N2                5                 29
  N3                1                  4
                    vv
clus                  M0  M1  MX
  16Q GAIN MUTATED    62   1   6
  16Q GAIN WILD-TYPE 286   4  41
D29V6, multiclass
    clus
vv   16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  M0               62                286
  M1                1                  4
  MX                6                 41
D29V7, binary
                    cls
clus                   0   1
  16Q GAIN MUTATED     9  60
  16Q GAIN WILD-TYPE  92 245
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16Q GAIN MUTATED      9   60
  16Q GAIN WILD-TYPE   92  245
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  FEMALE                9                 92
  MALE                 60                245
D29V8, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  16Q GAIN MUTATED                                       2
  16Q GAIN WILD-TYPE                                    10
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  16Q GAIN MUTATED                                        1
  16Q GAIN WILD-TYPE                                      5
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  16Q GAIN MUTATED                                         1
  16Q GAIN WILD-TYPE                                       0
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  16Q GAIN MUTATED                                                            65
  16Q GAIN WILD-TYPE                                                         322
D29V9, multiclass
                                                             clus
vv                                                            16Q GAIN MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      2
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                     1
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               65
                                                             clus
vv                                                            16Q GAIN WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       10
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                       5
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                      0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                322
D29V10, binary
                    cls
clus                   0   1
  16Q GAIN MUTATED     2  67
  16Q GAIN WILD-TYPE  10 327
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16Q GAIN MUTATED      2   67
  16Q GAIN WILD-TYPE   10  327
     clus
vv    16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  NO                 2                 10
  YES               67                327
D29V11, continuous
D29V12, continuous
                    vv
clus                  R0  R1  R2  RX
  16Q GAIN MUTATED    58   3   0   3
  16Q GAIN WILD-TYPE 272   5   4  15
D29V13, multiclass
    clus
vv   16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  R0               58                272
  R1                3                  5
  R2                0                  4
  RX                3                 15

Clustering(30) Variable = 17P GAIN MUTATION ANALYSIS
D30V1, survival
                    sevent
clus2                  0   1
  17P GAIN MUTATED    33  18
  17P GAIN WILD-TYPE 206 120
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
                51                326 
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
                18                120 
$`17P GAIN MUTATED`
TCGA-18-3412 TCGA-18-3417 TCGA-21-1071 TCGA-21-1072 TCGA-22-1017 TCGA-22-4593 
       11.34        24.92        46.88        99.16        48.82        35.08 
TCGA-22-4601 TCGA-22-4613 TCGA-22-5474 TCGA-33-4532 TCGA-33-4538 TCGA-33-4582 
       34.75        11.77        14.60         7.63        97.94       103.53 
TCGA-34-2596 TCGA-34-5240 TCGA-34-5241 TCGA-43-2578 TCGA-43-7657 TCGA-43-8118 
        2.63        12.00        14.07        22.49         1.58         2.93 
TCGA-46-6025 TCGA-56-7222 TCGA-56-7582 TCGA-56-7730 TCGA-56-8504 TCGA-58-8391 
       10.65         0.43         0.85         0.20         5.82        71.24 
TCGA-58-A46K TCGA-60-2726 TCGA-66-2756 TCGA-66-2770 TCGA-66-2787 TCGA-66-2792 
       34.36        11.77         0.99        23.01        40.01        30.02 
TCGA-68-8250 TCGA-68-8251 TCGA-77-7142 TCGA-77-8156 TCGA-85-7843 TCGA-85-7950 
        8.02         3.12        42.25         0.33         1.15         1.97 
TCGA-85-8277 TCGA-85-8350 TCGA-85-8352 TCGA-85-8353 TCGA-85-8354 TCGA-85-8664 
        0.36         1.97         2.20         1.78         2.01         0.10 
TCGA-90-7769 TCGA-90-A4EE TCGA-92-7340 TCGA-94-7557 TCGA-94-7943 TCGA-98-8020 
       11.77        10.88         2.70         0.16        11.70         2.73 
TCGA-J1-A4AH TCGA-L3-A524 TCGA-MF-A522 
        7.30        14.76         3.02 

$`17P GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 
       13.02        59.51        28.34         1.61        43.76         6.15 
TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1075 
        2.79        90.51         3.02        27.16       119.54        70.13 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1079 TCGA-21-1080 TCGA-21-1081 
       60.89        34.78        15.55        31.69       122.43         9.30 
TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 TCGA-21-5786 
      119.80         8.78        31.63        88.08        41.69        33.93 
TCGA-21-5787 TCGA-21-A5DI TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 
       10.82        32.19        19.99         7.33        14.93         4.31 
TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4594 
       64.21         1.74        14.10        27.02        20.45        48.33 
TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 
       24.13         0.56        38.17        13.12        32.02        19.30 
TCGA-22-4609 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5477 TCGA-22-5478 
        9.53        31.73        64.90        63.52        44.22         0.79 
TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 
       54.28        71.34        79.20        11.74        18.84        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-22-A5C4 TCGA-33-4533 TCGA-33-4547 
       62.86        56.32        16.60         0.95       114.05        43.10 
TCGA-33-4566 TCGA-33-4583 TCGA-33-4586 TCGA-33-4587 TCGA-33-4589 TCGA-33-6737 
      173.79       141.34        14.07        54.44        10.98        19.76 
TCGA-33-6738 TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 
       26.99        61.61        31.50        28.96        32.84        31.23 
TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5927 
       50.24        67.79        56.38         9.04        23.24        30.94 
TCGA-34-5928 TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 
       18.12         4.96         1.08         3.95         0.43         0.39 
TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 
        6.54         8.09         7.46         7.82         6.81         0.39 
TCGA-37-5819 TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 
        3.39        47.80        74.07        44.71        68.58        55.17 
TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 
       70.03        60.76         1.71        24.33         1.94        27.35 
TCGA-39-5034 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-39-5040 
       36.39        15.58        35.64        35.70        17.88        17.06 
TCGA-43-2576 TCGA-43-2581 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-5670 
       40.21        38.66        27.02        33.07        11.47        18.05 
TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 
       12.36        24.89        10.19         5.42         3.78         6.97 
TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 TCGA-43-A474 TCGA-43-A475 TCGA-43-A56V 
       66.51         6.64         6.35        11.61         9.73         5.06 
TCGA-46-3768 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 
        9.96        13.87         0.39         0.39        29.95        17.79 
TCGA-52-7809 TCGA-52-7810 TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 
        5.42        30.31         8.75        27.45        28.93         0.10 
TCGA-56-5898 TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 TCGA-56-7223 TCGA-56-7579 
       18.25         2.04         1.02         0.99         0.99         1.45 
TCGA-56-7580 TCGA-56-7822 TCGA-56-8503 TCGA-56-8622 TCGA-56-8624 TCGA-56-8625 
        1.32         0.03         1.35         1.78         1.18         2.07 
TCGA-56-8626 TCGA-56-8628 TCGA-56-8629 TCGA-56-A49D TCGA-56-A4BX TCGA-56-A4BY 
        0.56         0.53         1.12         0.99         1.51         0.99 
TCGA-56-A4ZJ TCGA-56-A4ZK TCGA-56-A5DS TCGA-58-8386 TCGA-58-8387 TCGA-58-8388 
        1.02         0.13         0.26         0.03        13.25        12.43 
TCGA-58-8390 TCGA-58-8392 TCGA-58-8393 TCGA-58-A46J TCGA-58-A46L TCGA-58-A46M 
       29.95        16.47        34.78        64.87        36.59        23.24 
TCGA-58-A46N TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 
       17.72        21.07         3.58        12.23        10.22        96.82 
TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 
       37.94        92.71        21.70        80.42        49.48        66.51 
TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 
       41.39         9.01        56.91        50.33        35.34        48.49 
TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 
       42.61         3.16        32.28        29.85        35.90        23.57 
TCGA-60-2725 TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 
       26.79        16.96        43.10         2.01        21.07         0.99 
TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 
        1.02         2.01         0.92         0.99        20.98        25.02 
TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 
        0.99         2.01         1.02         2.01         2.01         7.07 
TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 
       19.00         3.02         2.01        19.00        12.03         3.98 
TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2788 TCGA-66-2789 
       12.00        24.95         1.94        25.97        22.98         4.04 
TCGA-66-2790 TCGA-66-2791 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 
       22.98         5.03        10.06        54.08         4.01        49.05 
TCGA-68-7755 TCGA-68-7756 TCGA-68-7757 TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 
        2.73         6.64         6.94        29.56        73.08        75.09 
TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 TCGA-77-7335 
       23.28        11.18        89.95        20.78         0.49        70.09 
TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 TCGA-77-8007 TCGA-77-8008 
      106.95         0.16        46.78        15.75         6.51        86.76 
TCGA-77-8009 TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 
       53.95        37.81        82.92        12.59        53.92        39.09 
TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 TCGA-77-8143 TCGA-77-8144 TCGA-77-8145 
       17.69       104.09        11.54        26.40        27.39         6.97 
TCGA-77-8148 TCGA-77-8150 TCGA-77-8153 TCGA-77-8154 TCGA-77-A5FZ TCGA-77-A5G3 
        9.63        54.41        55.33        35.90       126.18       117.57 
TCGA-77-A5GB TCGA-77-A5GH TCGA-85-6560 TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 
       30.81        23.44         0.36         0.79         1.12         0.59 
TCGA-85-7697 TCGA-85-7698 TCGA-85-7699 TCGA-85-7844 TCGA-85-8048 TCGA-85-8049 
        0.33         1.61         0.03         1.25         0.85         1.97 
TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 TCGA-85-8276 TCGA-85-8287 
        0.53        16.77        14.07         1.18         0.43         1.45 
TCGA-85-8288 TCGA-85-8351 TCGA-85-8355 TCGA-85-8479 TCGA-85-8481 TCGA-85-8580 
        1.78         1.81         0.66         0.72         0.66        14.60 
TCGA-85-8582 TCGA-85-8666 TCGA-85-A4CL TCGA-85-A4QR TCGA-85-A50M TCGA-85-A513 
       13.91        15.58         0.46         0.82         0.62         0.79 
TCGA-85-A53L TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 TCGA-90-7964 TCGA-90-A4ED 
        0.43        24.89         9.50         2.93        14.07         8.02 
TCGA-92-7341 TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 TCGA-96-7544 
        3.48         4.01         5.26         2.27         2.86        39.88 
TCGA-96-7545 TCGA-96-8169 TCGA-96-8170 TCGA-96-A4JK TCGA-96-A4JL TCGA-98-7454 
       44.15         6.18         6.90         8.98         6.02         8.42 
TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 TCGA-L3-A4E7 TCGA-LA-A446 TCGA-NC-A5HE 
       13.58         7.33        10.13         1.15         1.18        56.61 
TCGA-NC-A5HG TCGA-NC-A5HI 
       50.86        37.32 

  17P GAIN MUTATED 17P GAIN WILD-TYPE 
              0.10               0.03 
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
            103.53             173.79 
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
            10.650             14.765 
[1] "0.1 - 103.5 (10.7)" "0.0 - 173.8 (14.8)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED"   "17P GAIN MUTATED" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-A5C4         TCGA-33-4532         TCGA-33-4533 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-33-4538         TCGA-33-4547         TCGA-33-4566 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-33-4582         TCGA-33-4583         TCGA-33-4586 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-33-4587         TCGA-33-4589         TCGA-33-6737 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-33-6738         TCGA-34-2596         TCGA-34-2600 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-34-2604         TCGA-34-2605         TCGA-34-2608 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-34-2609         TCGA-34-5231         TCGA-34-5232 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-34-5234         TCGA-34-5236         TCGA-34-5239 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-34-5240         TCGA-34-5241         TCGA-34-5927 
  "17P GAIN MUTATED"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-34-5928         TCGA-34-5929         TCGA-34-7107 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-3792 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4132 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-37-4133         TCGA-37-4135         TCGA-37-4141 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-37-5819         TCGA-39-5011         TCGA-39-5016 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-39-5019         TCGA-39-5021         TCGA-39-5022 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-39-5024         TCGA-39-5027         TCGA-39-5028 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-39-5029         TCGA-39-5030         TCGA-39-5031 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-39-5034         TCGA-39-5035         TCGA-39-5036 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-39-5037         TCGA-39-5039         TCGA-39-5040 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-43-8118 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-43-A474         TCGA-43-A475         TCGA-43-A56V 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-46-3768         TCGA-46-6025         TCGA-46-6026 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-51-4079         TCGA-51-4080         TCGA-51-4081 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-52-7622         TCGA-52-7809         TCGA-52-7810 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-52-7811         TCGA-52-7812         TCGA-56-1622 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-56-5897         TCGA-56-5898         TCGA-56-6545 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-56-6546         TCGA-56-7221         TCGA-56-7222 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-56-7223         TCGA-56-7579         TCGA-56-7580 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-56-7582         TCGA-56-7730         TCGA-56-7822 
  "17P GAIN MUTATED"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-56-8503         TCGA-56-8504         TCGA-56-8622 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-56-8624         TCGA-56-8625         TCGA-56-8626 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-56-8628         TCGA-56-8629         TCGA-56-A49D 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-56-A4BX         TCGA-56-A4BY         TCGA-56-A4ZJ 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-56-A4ZK         TCGA-56-A5DS         TCGA-58-8386 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-58-8387         TCGA-58-8388         TCGA-58-8390 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-58-8391         TCGA-58-8392         TCGA-58-8393 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-58-A46J         TCGA-58-A46K         TCGA-58-A46L 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-58-A46M         TCGA-58-A46N         TCGA-60-2695 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-60-2696         TCGA-60-2697         TCGA-60-2698 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-60-2703         TCGA-60-2704         TCGA-60-2706 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2756 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2770         TCGA-66-2771         TCGA-66-2773 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2785         TCGA-66-2786         TCGA-66-2787 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-68-7755         TCGA-68-7756         TCGA-68-7757 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-68-8250         TCGA-68-8251         TCGA-77-6842 
  "17P GAIN MUTATED"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-77-6843         TCGA-77-6844         TCGA-77-6845 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-77-7138         TCGA-77-7139         TCGA-77-7140 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-77-7141         TCGA-77-7142         TCGA-77-7335 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-77-7337         TCGA-77-7338         TCGA-77-7463 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-77-7465         TCGA-77-8007         TCGA-77-8008 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-77-8009         TCGA-77-8128         TCGA-77-8130 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-77-8131         TCGA-77-8133         TCGA-77-8136 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-77-8138         TCGA-77-8139         TCGA-77-8140 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-77-8143         TCGA-77-8144         TCGA-77-8145 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-77-8148         TCGA-77-8150         TCGA-77-8153 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-77-8154         TCGA-77-8156         TCGA-77-A5FZ 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-77-A5G3         TCGA-77-A5GB         TCGA-77-A5GH 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED"   "17P GAIN MUTATED" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED"   "17P GAIN MUTATED" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-96-8169         TCGA-96-8170         TCGA-96-A4JK 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-96-A4JL         TCGA-98-7454         TCGA-98-8020 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-LA-A446         TCGA-MF-A522         TCGA-NC-A5HE 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED"   "17P GAIN MUTATED" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-A5C4         TCGA-33-4532         TCGA-33-4533 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-33-4538         TCGA-33-4547         TCGA-33-4566 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-33-4582         TCGA-33-4583         TCGA-33-4586 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-33-4587         TCGA-33-4589         TCGA-33-6737 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-33-6738         TCGA-34-2596         TCGA-34-2600 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-34-2604         TCGA-34-2605         TCGA-34-2608 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-34-2609         TCGA-34-5231         TCGA-34-5232 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-34-5234         TCGA-34-5236         TCGA-34-5239 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-34-5240         TCGA-34-5241         TCGA-34-5927 
  "17P GAIN MUTATED"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-34-5928         TCGA-34-5929         TCGA-34-7107 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-3792 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4132 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-37-4133         TCGA-37-4135         TCGA-37-4141 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-37-5819         TCGA-39-5011         TCGA-39-5016 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-39-5019         TCGA-39-5021         TCGA-39-5022 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-39-5024         TCGA-39-5027         TCGA-39-5028 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-39-5029         TCGA-39-5030         TCGA-39-5031 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-39-5034         TCGA-39-5035         TCGA-39-5036 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-39-5037         TCGA-39-5039         TCGA-39-5040 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-43-8118 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-43-A474         TCGA-43-A475         TCGA-43-A56V 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-46-3768         TCGA-46-6025         TCGA-46-6026 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-51-4079         TCGA-51-4080         TCGA-51-4081 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-52-7622         TCGA-52-7809         TCGA-52-7810 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-52-7811         TCGA-52-7812         TCGA-56-1622 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-56-5897         TCGA-56-5898         TCGA-56-6545 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-56-6546         TCGA-56-7221         TCGA-56-7222 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-56-7223         TCGA-56-7579         TCGA-56-7580 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-56-7582         TCGA-56-7730         TCGA-56-7822 
  "17P GAIN MUTATED"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-56-8503         TCGA-56-8504         TCGA-56-8622 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-56-8624         TCGA-56-8625         TCGA-56-8626 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-56-8628         TCGA-56-8629         TCGA-56-A49D 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-56-A4BX         TCGA-56-A4BY         TCGA-56-A4ZJ 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-56-A4ZK         TCGA-56-A5DS         TCGA-58-8386 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-58-8387         TCGA-58-8388         TCGA-58-8390 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-58-8391         TCGA-58-8392         TCGA-58-8393 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-58-A46J         TCGA-58-A46K         TCGA-58-A46L 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-58-A46M         TCGA-58-A46N         TCGA-60-2695 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-60-2696         TCGA-60-2697         TCGA-60-2698 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-60-2703         TCGA-60-2704         TCGA-60-2706 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2756 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2770         TCGA-66-2771         TCGA-66-2773 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2785         TCGA-66-2786         TCGA-66-2787 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-68-7755         TCGA-68-7756         TCGA-68-7757 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-68-8250         TCGA-68-8251         TCGA-77-6842 
  "17P GAIN MUTATED"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-77-6843         TCGA-77-6844         TCGA-77-6845 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-77-7138         TCGA-77-7139         TCGA-77-7140 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-77-7141         TCGA-77-7142         TCGA-77-7335 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-77-7337         TCGA-77-7338         TCGA-77-7463 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-77-7465         TCGA-77-8007         TCGA-77-8008 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-77-8009         TCGA-77-8128         TCGA-77-8130 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-77-8131         TCGA-77-8133         TCGA-77-8136 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-77-8138         TCGA-77-8139         TCGA-77-8140 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-77-8143         TCGA-77-8144         TCGA-77-8145 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-77-8148         TCGA-77-8150         TCGA-77-8153 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-77-8154         TCGA-77-8156         TCGA-77-A5FZ 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-77-A5G3         TCGA-77-A5GB         TCGA-77-A5GH 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED"   "17P GAIN MUTATED" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED"   "17P GAIN MUTATED" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-96-8169         TCGA-96-8170         TCGA-96-A4JK 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-96-A4JL         TCGA-98-7454         TCGA-98-8020 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-LA-A446         TCGA-MF-A522         TCGA-NC-A5HE 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED"   "17P GAIN MUTATED" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-A5C4         TCGA-33-4532         TCGA-33-4533 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-33-4538         TCGA-33-4547         TCGA-33-4566 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-33-4582         TCGA-33-4583         TCGA-33-4586 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-33-4587         TCGA-33-4589         TCGA-33-6737 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-33-6738         TCGA-34-2596         TCGA-34-2600 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-34-2604         TCGA-34-2605         TCGA-34-2608 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-34-2609         TCGA-34-5231         TCGA-34-5232 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-34-5234         TCGA-34-5236         TCGA-34-5239 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-34-5240         TCGA-34-5241         TCGA-34-5927 
  "17P GAIN MUTATED"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-34-5928         TCGA-34-5929         TCGA-34-7107 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-3792 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4132 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-37-4133         TCGA-37-4135         TCGA-37-4141 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-37-5819         TCGA-39-5011         TCGA-39-5016 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-39-5019         TCGA-39-5021         TCGA-39-5022 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-39-5024         TCGA-39-5027         TCGA-39-5028 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-39-5029         TCGA-39-5030         TCGA-39-5031 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-39-5034         TCGA-39-5035         TCGA-39-5036 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-39-5037         TCGA-39-5039         TCGA-39-5040 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-43-8118 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-43-A474         TCGA-43-A475         TCGA-43-A56V 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-46-3768         TCGA-46-6025         TCGA-46-6026 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-51-4079         TCGA-51-4080         TCGA-51-4081 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-52-7622         TCGA-52-7809         TCGA-52-7810 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-52-7811         TCGA-52-7812         TCGA-56-1622 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-56-5897         TCGA-56-5898         TCGA-56-6545 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-56-6546         TCGA-56-7221         TCGA-56-7222 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-56-7223         TCGA-56-7579         TCGA-56-7580 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-56-7582         TCGA-56-7730         TCGA-56-7822 
  "17P GAIN MUTATED"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-56-8503         TCGA-56-8504         TCGA-56-8622 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-56-8624         TCGA-56-8625         TCGA-56-8626 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-56-8628         TCGA-56-8629         TCGA-56-A49D 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-56-A4BX         TCGA-56-A4BY         TCGA-56-A4ZJ 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-56-A4ZK         TCGA-56-A5DS         TCGA-58-8386 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-58-8387         TCGA-58-8388         TCGA-58-8390 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-58-8391         TCGA-58-8392         TCGA-58-8393 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-58-A46J         TCGA-58-A46K         TCGA-58-A46L 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-58-A46M         TCGA-58-A46N         TCGA-60-2695 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-60-2696         TCGA-60-2697         TCGA-60-2698 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-60-2703         TCGA-60-2704         TCGA-60-2706 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2756 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2770         TCGA-66-2771         TCGA-66-2773 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2785         TCGA-66-2786         TCGA-66-2787 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-68-7755         TCGA-68-7756         TCGA-68-7757 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-68-8250         TCGA-68-8251         TCGA-77-6842 
  "17P GAIN MUTATED"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-77-6843         TCGA-77-6844         TCGA-77-6845 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-77-7138         TCGA-77-7139         TCGA-77-7140 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-77-7141         TCGA-77-7142         TCGA-77-7335 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-77-7337         TCGA-77-7338         TCGA-77-7463 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-77-7465         TCGA-77-8007         TCGA-77-8008 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-77-8009         TCGA-77-8128         TCGA-77-8130 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-77-8131         TCGA-77-8133         TCGA-77-8136 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-77-8138         TCGA-77-8139         TCGA-77-8140 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-77-8143         TCGA-77-8144         TCGA-77-8145 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-77-8148         TCGA-77-8150         TCGA-77-8153 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-77-8154         TCGA-77-8156         TCGA-77-A5FZ 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-77-A5G3         TCGA-77-A5GB         TCGA-77-A5GH 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED"   "17P GAIN MUTATED" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED"   "17P GAIN MUTATED" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-96-8169         TCGA-96-8170         TCGA-96-A4JK 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-96-A4JL         TCGA-98-7454         TCGA-98-8020 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-LA-A446         TCGA-MF-A522         TCGA-NC-A5HE 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
[1] "hr=" "1.3"
D30V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  17P GAIN MUTATED         0       10       16        0         8         8
  17P GAIN WILD-TYPE       1       58      117        1        42        63
                    vv
clus                 STAGE IIIA STAGE IIIB STAGE IV
  17P GAIN MUTATED            8          1        1
  17P GAIN WILD-TYPE         46         19        4
D30V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  17P GAIN MUTATED    10  36   5   2
  17P GAIN WILD-TYPE  83 214  39  17
D30V4, multiclass
    clus
vv   17P GAIN MUTATED 17P GAIN WILD-TYPE
  T1               10                 83
  T2               36                214
  T3                5                 39
  T4                2                 17
                    vv
clus                  N0  N1  N2  N3
  17P GAIN MUTATED    33  15   4   0
  17P GAIN WILD-TYPE 220  94  30   5
D30V5, multiclass
    clus
vv   17P GAIN MUTATED 17P GAIN WILD-TYPE
  N0               33                220
  N1               15                 94
  N2                4                 30
  N3                0                  5
                    vv
clus                  M0  M1  MX
  17P GAIN MUTATED    42   1   9
  17P GAIN WILD-TYPE 306   4  38
D30V6, multiclass
    clus
vv   17P GAIN MUTATED 17P GAIN WILD-TYPE
  M0               42                306
  M1                1                  4
  MX                9                 38
D30V7, binary
                    cls
clus                   0   1
  17P GAIN MUTATED    12  41
  17P GAIN WILD-TYPE  89 264
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17P GAIN MUTATED     12   41
  17P GAIN WILD-TYPE   89  264
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  FEMALE               12                 89
  MALE                 41                264
D30V8, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  17P GAIN MUTATED                                       2
  17P GAIN WILD-TYPE                                    10
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  17P GAIN MUTATED                                        1
  17P GAIN WILD-TYPE                                      5
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  17P GAIN MUTATED                                         0
  17P GAIN WILD-TYPE                                       1
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  17P GAIN MUTATED                                                            50
  17P GAIN WILD-TYPE                                                         337
D30V9, multiclass
                                                             clus
vv                                                            17P GAIN MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      2
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                     1
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                    0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               50
                                                             clus
vv                                                            17P GAIN WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       10
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                       5
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                      1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                337
D30V10, binary
                    cls
clus                   0   1
  17P GAIN MUTATED     0  53
  17P GAIN WILD-TYPE  12 341
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17P GAIN MUTATED      0   53
  17P GAIN WILD-TYPE   12  341
     clus
vv    17P GAIN MUTATED 17P GAIN WILD-TYPE
  NO                 0                 12
  YES               53                341
D30V11, continuous
D30V12, continuous
                    vv
clus                  R0  R1  R2  RX
  17P GAIN MUTATED    38   1   0   3
  17P GAIN WILD-TYPE 292   7   4  15
D30V13, multiclass
    clus
vv   17P GAIN MUTATED 17P GAIN WILD-TYPE
  R0               38                292
  R1                1                  7
  R2                0                  4
  RX                3                 15

Clustering(31) Variable = 17Q GAIN MUTATION ANALYSIS
D31V1, survival
                    sevent
clus2                  0   1
  17Q GAIN MUTATED    78  47
  17Q GAIN WILD-TYPE 161  91
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
               125                252 
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
                47                 91 
$`17Q GAIN MUTATED`
TCGA-18-3407 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 TCGA-18-3417 TCGA-21-1071 
        4.47         4.80        46.52        11.34        24.92        46.88 
TCGA-21-1072 TCGA-21-1075 TCGA-21-1077 TCGA-21-1082 TCGA-21-1083 TCGA-21-5786 
       99.16        70.13        34.78       119.80         8.78        33.93 
TCGA-21-5787 TCGA-22-1012 TCGA-22-1017 TCGA-22-4593 TCGA-22-4599 TCGA-22-4601 
       10.82        14.10        48.82        35.08        38.17        34.75 
TCGA-22-4604 TCGA-22-4613 TCGA-22-5471 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 
       13.12        11.77        31.73        63.52        14.60        44.22 
TCGA-22-5483 TCGA-33-4532 TCGA-33-4538 TCGA-33-4582 TCGA-33-4586 TCGA-33-6738 
       18.84         7.63        97.94       103.53        14.07        26.99 
TCGA-34-2596 TCGA-34-2604 TCGA-34-5231 TCGA-34-5240 TCGA-37-3792 TCGA-37-4133 
        2.63        31.50        50.24        12.00         0.39         7.82 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5027 TCGA-39-5037 TCGA-43-2576 TCGA-43-2578 
       74.07        44.71        60.76        35.70        40.21        22.49 
TCGA-43-5668 TCGA-43-7657 TCGA-43-8118 TCGA-43-A475 TCGA-46-3768 TCGA-46-6025 
       11.47         1.58         2.93         9.73         9.96        10.65 
TCGA-46-6026 TCGA-51-4080 TCGA-52-7812 TCGA-56-1622 TCGA-56-7222 TCGA-56-7223 
       13.87         0.39        27.45        28.93         0.43         0.99 
TCGA-56-7582 TCGA-56-7730 TCGA-56-8504 TCGA-56-8629 TCGA-56-A4BX TCGA-58-8386 
        0.85         0.20         5.82         1.12         1.51         0.03 
TCGA-58-8391 TCGA-58-A46J TCGA-58-A46K TCGA-58-A46M TCGA-58-A46N TCGA-60-2703 
       71.24        64.87        34.36        23.24        17.72        96.82 
TCGA-60-2707 TCGA-60-2715 TCGA-60-2722 TCGA-60-2726 TCGA-66-2742 TCGA-66-2756 
       21.70        35.34        29.85        11.77        21.07         0.99 
TCGA-66-2758 TCGA-66-2763 TCGA-66-2767 TCGA-66-2770 TCGA-66-2773 TCGA-66-2777 
       20.98         0.99         2.01        23.01         3.02         2.01 
TCGA-66-2781 TCGA-66-2787 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-68-7755 
        3.98        40.01         5.03        30.02        10.06         2.73 
TCGA-68-8250 TCGA-68-8251 TCGA-77-6842 TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 
        8.02         3.12        29.56        23.28        11.18        89.95 
TCGA-77-7141 TCGA-77-7142 TCGA-77-7465 TCGA-77-8007 TCGA-77-8009 TCGA-77-8128 
        0.49        42.25        15.75         6.51        53.95        37.81 
TCGA-77-8136 TCGA-77-8139 TCGA-77-8156 TCGA-77-A5G3 TCGA-85-6560 TCGA-85-7843 
       39.09       104.09         0.33       117.57         0.36         1.15 
TCGA-85-7844 TCGA-85-8070 TCGA-85-8277 TCGA-85-8350 TCGA-85-8352 TCGA-85-8353 
        1.25        16.77         0.36         1.97         2.20         1.78 
TCGA-85-8354 TCGA-85-8664 TCGA-85-8666 TCGA-85-A4CL TCGA-85-A4QR TCGA-90-7767 
        2.01         0.10        15.58         0.46         0.82         2.93 
TCGA-90-7769 TCGA-90-A4ED TCGA-90-A4EE TCGA-92-7340 TCGA-92-7341 TCGA-96-7545 
       11.77         8.02        10.88         2.70         3.48        44.15 
TCGA-96-A4JK TCGA-98-8023 TCGA-J1-A4AH TCGA-L3-A524 TCGA-MF-A522 
        8.98        10.13         7.30        14.76         3.02 

$`17Q GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3408 TCGA-18-3409 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 
       12.16        81.07        79.46        13.02        59.51        28.34 
TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 
        1.61        43.76         6.15         2.79        90.51         3.02 
TCGA-18-5595 TCGA-21-1070 TCGA-21-1076 TCGA-21-1078 TCGA-21-1079 TCGA-21-1080 
       27.16       119.54        60.89        15.55        31.69       122.43 
TCGA-21-1081 TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 TCGA-21-A5DI TCGA-22-0940 
        9.30        31.63        88.08        41.69        32.19        19.99 
TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 TCGA-22-1016 
        7.33        14.93         4.31        64.21         1.74        27.02 
TCGA-22-4591 TCGA-22-4594 TCGA-22-4595 TCGA-22-4596 TCGA-22-4605 TCGA-22-4607 
       20.45        48.33        24.13         0.56        32.02        19.30 
TCGA-22-4609 TCGA-22-5472 TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 
        9.53        64.90         0.79        54.28        71.34        79.20 
TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-22-A5C4 
       11.74        30.08        62.86        56.32        16.60         0.95 
TCGA-33-4533 TCGA-33-4547 TCGA-33-4566 TCGA-33-4583 TCGA-33-4587 TCGA-33-4589 
      114.05        43.10       173.79       141.34        54.44        10.98 
TCGA-33-6737 TCGA-34-2600 TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 TCGA-34-5232 
       19.76        61.61        28.96        32.84        31.23        67.79 
TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 
       56.38         9.04        23.24        14.07        30.94        18.12 
TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 TCGA-37-4129 TCGA-37-4130 
        4.96         1.08         3.95         0.43         6.54         8.09 
TCGA-37-4132 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5011 TCGA-39-5021 
        7.46         6.81         0.39         3.39        47.80        68.58 
TCGA-39-5022 TCGA-39-5024 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 
       55.17        70.03         1.71        24.33         1.94        27.35 
TCGA-39-5034 TCGA-39-5035 TCGA-39-5036 TCGA-39-5039 TCGA-39-5040 TCGA-43-2581 
       36.39        15.58        35.64        17.88        17.06        38.66 
TCGA-43-3394 TCGA-43-3920 TCGA-43-5670 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 
       27.02        33.07        18.05        12.36        24.89        10.19 
TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 
        5.42         3.78         6.97        66.51         6.64         6.35 
TCGA-43-A474 TCGA-43-A56V TCGA-51-4079 TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 
       11.61         5.06         0.39        29.95        17.79         5.42 
TCGA-52-7810 TCGA-52-7811 TCGA-56-5897 TCGA-56-5898 TCGA-56-6545 TCGA-56-6546 
       30.31         8.75         0.10        18.25         2.04         1.02 
TCGA-56-7221 TCGA-56-7579 TCGA-56-7580 TCGA-56-7822 TCGA-56-8503 TCGA-56-8622 
        0.99         1.45         1.32         0.03         1.35         1.78 
TCGA-56-8624 TCGA-56-8625 TCGA-56-8626 TCGA-56-8628 TCGA-56-A49D TCGA-56-A4BY 
        1.18         2.07         0.56         0.53         0.99         0.99 
TCGA-56-A4ZJ TCGA-56-A4ZK TCGA-56-A5DS TCGA-58-8387 TCGA-58-8388 TCGA-58-8390 
        1.02         0.13         0.26        13.25        12.43        29.95 
TCGA-58-8392 TCGA-58-8393 TCGA-58-A46L TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 
       16.47        34.78        36.59        21.07         3.58        12.23 
TCGA-60-2698 TCGA-60-2704 TCGA-60-2706 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 
       10.22        37.94        92.71        80.42        49.48        66.51 
TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 TCGA-60-2716 TCGA-60-2719 
       41.39         9.01        56.91        50.33        48.49        42.61 
TCGA-60-2720 TCGA-60-2721 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-66-2727 
        3.16        32.28        35.90        23.57        26.79        16.96 
TCGA-66-2734 TCGA-66-2737 TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 
       43.10         2.01         0.99         1.02         2.01         0.92 
TCGA-66-2757 TCGA-66-2759 TCGA-66-2765 TCGA-66-2766 TCGA-66-2768 TCGA-66-2769 
        0.99        25.02         2.01         1.02         2.01         7.07 
TCGA-66-2771 TCGA-66-2778 TCGA-66-2780 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 
       19.00        19.00        12.03        12.00        24.95         1.94 
TCGA-66-2786 TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 TCGA-66-2794 TCGA-66-2795 
       25.97        22.98         4.04        22.98        54.08         4.01 
TCGA-66-2800 TCGA-68-7756 TCGA-68-7757 TCGA-77-6843 TCGA-77-6844 TCGA-77-7140 
       49.05         6.64         6.94        73.08        75.09        20.78 
TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 TCGA-77-8008 TCGA-77-8130 
       70.09       106.95         0.16        46.78        86.76        82.92 
TCGA-77-8131 TCGA-77-8133 TCGA-77-8138 TCGA-77-8140 TCGA-77-8143 TCGA-77-8144 
       12.59        53.92        17.69        11.54        26.40        27.39 
TCGA-77-8145 TCGA-77-8148 TCGA-77-8150 TCGA-77-8153 TCGA-77-8154 TCGA-77-A5FZ 
        6.97         9.63        54.41        55.33        35.90       126.18 
TCGA-77-A5GB TCGA-77-A5GH TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 TCGA-85-7697 
       30.81        23.44         0.79         1.12         0.59         0.33 
TCGA-85-7698 TCGA-85-7699 TCGA-85-7950 TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 
        1.61         0.03         1.97         0.85         1.97         0.53 
TCGA-85-8071 TCGA-85-8072 TCGA-85-8276 TCGA-85-8287 TCGA-85-8288 TCGA-85-8351 
       14.07         1.18         0.43         1.45         1.78         1.81 
TCGA-85-8355 TCGA-85-8479 TCGA-85-8481 TCGA-85-8580 TCGA-85-8582 TCGA-85-A50M 
        0.66         0.72         0.66        14.60        13.91         0.62 
TCGA-85-A513 TCGA-85-A53L TCGA-90-6837 TCGA-90-7766 TCGA-90-7964 TCGA-92-8063 
        0.79         0.43        24.89         9.50        14.07         4.01 
TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 TCGA-94-7943 TCGA-96-7544 
        5.26         2.27         2.86         0.16        11.70        39.88 
TCGA-96-8169 TCGA-96-8170 TCGA-96-A4JL TCGA-98-7454 TCGA-98-8020 TCGA-98-8021 
        6.18         6.90         6.02         8.42         2.73        13.58 
TCGA-98-8022 TCGA-L3-A4E7 TCGA-LA-A446 TCGA-NC-A5HE TCGA-NC-A5HG TCGA-NC-A5HI 
        7.33         1.15         1.18        56.61        50.86        37.32 

  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
              0.03               0.03 
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
            119.80             173.79 
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
             12.00              13.99 
[1] "0.0 - 119.8 (12.0)" "0.0 - 173.8 (14.0)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-22-A5C4         TCGA-33-4532         TCGA-33-4533 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-33-4538         TCGA-33-4547         TCGA-33-4566 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-33-4582         TCGA-33-4583         TCGA-33-4586 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-33-4587         TCGA-33-4589         TCGA-33-6737 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-33-6738         TCGA-34-2596         TCGA-34-2600 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-34-2604         TCGA-34-2605         TCGA-34-2608 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-34-2609         TCGA-34-5231         TCGA-34-5232 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-34-5234         TCGA-34-5236         TCGA-34-5239 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-34-5240         TCGA-34-5241         TCGA-34-5927 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-34-5928         TCGA-34-5929         TCGA-34-7107 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-3792 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4132 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-37-4133         TCGA-37-4135         TCGA-37-4141 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-37-5819         TCGA-39-5011         TCGA-39-5016 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-39-5019         TCGA-39-5021         TCGA-39-5022 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-39-5024         TCGA-39-5027         TCGA-39-5028 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-39-5029         TCGA-39-5030         TCGA-39-5031 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-39-5034         TCGA-39-5035         TCGA-39-5036 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-39-5037         TCGA-39-5039         TCGA-39-5040 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-43-8118 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-43-A474         TCGA-43-A475         TCGA-43-A56V 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-46-3768         TCGA-46-6025         TCGA-46-6026 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-51-4079         TCGA-51-4080         TCGA-51-4081 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-52-7622         TCGA-52-7809         TCGA-52-7810 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-52-7811         TCGA-52-7812         TCGA-56-1622 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-56-5897         TCGA-56-5898         TCGA-56-6545 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-56-6546         TCGA-56-7221         TCGA-56-7222 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-56-7223         TCGA-56-7579         TCGA-56-7580 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-56-7582         TCGA-56-7730         TCGA-56-7822 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-56-8503         TCGA-56-8504         TCGA-56-8622 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-56-8624         TCGA-56-8625         TCGA-56-8626 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-56-8628         TCGA-56-8629         TCGA-56-A49D 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-56-A4BX         TCGA-56-A4BY         TCGA-56-A4ZJ 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-56-A4ZK         TCGA-56-A5DS         TCGA-58-8386 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-58-8387         TCGA-58-8388         TCGA-58-8390 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-58-8391         TCGA-58-8392         TCGA-58-8393 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-58-A46J         TCGA-58-A46K         TCGA-58-A46L 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-58-A46M         TCGA-58-A46N         TCGA-60-2695 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-60-2696         TCGA-60-2697         TCGA-60-2698 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-60-2703         TCGA-60-2704         TCGA-60-2706 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2756 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-66-2770         TCGA-66-2771         TCGA-66-2773 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-66-2785         TCGA-66-2786         TCGA-66-2787 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-68-7755         TCGA-68-7756         TCGA-68-7757 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-68-8250         TCGA-68-8251         TCGA-77-6842 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-77-6843         TCGA-77-6844         TCGA-77-6845 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-77-7138         TCGA-77-7139         TCGA-77-7140 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-77-7141         TCGA-77-7142         TCGA-77-7335 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-77-7337         TCGA-77-7338         TCGA-77-7463 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-77-7465         TCGA-77-8007         TCGA-77-8008 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-77-8009         TCGA-77-8128         TCGA-77-8130 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-77-8131         TCGA-77-8133         TCGA-77-8136 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-77-8138         TCGA-77-8139         TCGA-77-8140 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-77-8143         TCGA-77-8144         TCGA-77-8145 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-77-8148         TCGA-77-8150         TCGA-77-8153 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-77-8154         TCGA-77-8156         TCGA-77-A5FZ 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-77-A5G3         TCGA-77-A5GB         TCGA-77-A5GH 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-22-A5C4         TCGA-33-4532         TCGA-33-4533 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-33-4538         TCGA-33-4547         TCGA-33-4566 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-33-4582         TCGA-33-4583         TCGA-33-4586 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-33-4587         TCGA-33-4589         TCGA-33-6737 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-33-6738         TCGA-34-2596         TCGA-34-2600 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-34-2604         TCGA-34-2605         TCGA-34-2608 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-34-2609         TCGA-34-5231         TCGA-34-5232 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-34-5234         TCGA-34-5236         TCGA-34-5239 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-34-5240         TCGA-34-5241         TCGA-34-5927 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-34-5928         TCGA-34-5929         TCGA-34-7107 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-3792 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4132 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-37-4133         TCGA-37-4135         TCGA-37-4141 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-37-5819         TCGA-39-5011         TCGA-39-5016 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-39-5019         TCGA-39-5021         TCGA-39-5022 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-39-5024         TCGA-39-5027         TCGA-39-5028 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-39-5029         TCGA-39-5030         TCGA-39-5031 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-39-5034         TCGA-39-5035         TCGA-39-5036 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-39-5037         TCGA-39-5039         TCGA-39-5040 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-43-8118 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-43-A474         TCGA-43-A475         TCGA-43-A56V 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-46-3768         TCGA-46-6025         TCGA-46-6026 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-51-4079         TCGA-51-4080         TCGA-51-4081 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-52-7622         TCGA-52-7809         TCGA-52-7810 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-52-7811         TCGA-52-7812         TCGA-56-1622 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-56-5897         TCGA-56-5898         TCGA-56-6545 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-56-6546         TCGA-56-7221         TCGA-56-7222 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-56-7223         TCGA-56-7579         TCGA-56-7580 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-56-7582         TCGA-56-7730         TCGA-56-7822 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-56-8503         TCGA-56-8504         TCGA-56-8622 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-56-8624         TCGA-56-8625         TCGA-56-8626 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-56-8628         TCGA-56-8629         TCGA-56-A49D 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-56-A4BX         TCGA-56-A4BY         TCGA-56-A4ZJ 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-56-A4ZK         TCGA-56-A5DS         TCGA-58-8386 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-58-8387         TCGA-58-8388         TCGA-58-8390 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-58-8391         TCGA-58-8392         TCGA-58-8393 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-58-A46J         TCGA-58-A46K         TCGA-58-A46L 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-58-A46M         TCGA-58-A46N         TCGA-60-2695 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-60-2696         TCGA-60-2697         TCGA-60-2698 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-60-2703         TCGA-60-2704         TCGA-60-2706 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2756 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-66-2770         TCGA-66-2771         TCGA-66-2773 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-66-2785         TCGA-66-2786         TCGA-66-2787 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-68-7755         TCGA-68-7756         TCGA-68-7757 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-68-8250         TCGA-68-8251         TCGA-77-6842 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-77-6843         TCGA-77-6844         TCGA-77-6845 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-77-7138         TCGA-77-7139         TCGA-77-7140 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-77-7141         TCGA-77-7142         TCGA-77-7335 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-77-7337         TCGA-77-7338         TCGA-77-7463 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-77-7465         TCGA-77-8007         TCGA-77-8008 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-77-8009         TCGA-77-8128         TCGA-77-8130 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-77-8131         TCGA-77-8133         TCGA-77-8136 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-77-8138         TCGA-77-8139         TCGA-77-8140 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-77-8143         TCGA-77-8144         TCGA-77-8145 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-77-8148         TCGA-77-8150         TCGA-77-8153 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-77-8154         TCGA-77-8156         TCGA-77-A5FZ 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-77-A5G3         TCGA-77-A5GB         TCGA-77-A5GH 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-96-8169         TCGA-96-8170         TCGA-96-A4JK 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-96-A4JL         TCGA-98-7454         TCGA-98-8020 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-LA-A446         TCGA-MF-A522         TCGA-NC-A5HE 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D31V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  17Q GAIN MUTATED         0       15       39        0        20        27
  17Q GAIN WILD-TYPE       1       53       94        1        30        44
                    vv
clus                 STAGE IIIA STAGE IIIB STAGE IV
  17Q GAIN MUTATED           18          6        3
  17Q GAIN WILD-TYPE         36         14        2
D31V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  17Q GAIN MUTATED    20  90  14   5
  17Q GAIN WILD-TYPE  73 160  30  14
D31V4, multiclass
    clus
vv   17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  T1               20                 73
  T2               90                160
  T3               14                 30
  T4                5                 14
                    vv
clus                  N0  N1  N2  N3
  17Q GAIN MUTATED    70  46  10   2
  17Q GAIN WILD-TYPE 183  63  24   3
D31V5, multiclass
    clus
vv   17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  N0               70                183
  N1               46                 63
  N2               10                 24
  N3                2                  3
                    vv
clus                  M0  M1  MX
  17Q GAIN MUTATED   108   3  16
  17Q GAIN WILD-TYPE 240   2  31
D31V6, multiclass
    clus
vv   17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  M0              108                240
  M1                3                  2
  MX               16                 31
D31V7, binary
                    cls
clus                   0   1
  17Q GAIN MUTATED    20 109
  17Q GAIN WILD-TYPE  81 196
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17Q GAIN MUTATED     20  109
  17Q GAIN WILD-TYPE   81  196
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  FEMALE               20                 81
  MALE                109                196
D31V8, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  17Q GAIN MUTATED                                       5
  17Q GAIN WILD-TYPE                                     7
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  17Q GAIN MUTATED                                        1
  17Q GAIN WILD-TYPE                                      5
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  17Q GAIN MUTATED                                         0
  17Q GAIN WILD-TYPE                                       1
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  17Q GAIN MUTATED                                                           123
  17Q GAIN WILD-TYPE                                                         264
D31V9, multiclass
                                                             clus
vv                                                            17Q GAIN MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      5
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                     1
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                    0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              123
                                                             clus
vv                                                            17Q GAIN WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                        7
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                       5
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                      1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                264
D31V10, binary
                    cls
clus                   0   1
  17Q GAIN MUTATED     5 124
  17Q GAIN WILD-TYPE   7 270
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17Q GAIN MUTATED      5  124
  17Q GAIN WILD-TYPE    7  270
     clus
vv    17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  NO                 5                  7
  YES              124                270
D31V11, continuous
D31V12, continuous
                    vv
clus                  R0  R1  R2  RX
  17Q GAIN MUTATED   104   3   2   4
  17Q GAIN WILD-TYPE 226   5   2  14
D31V13, multiclass
    clus
vv   17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  R0              104                226
  R1                3                  5
  R2                2                  2
  RX                4                 14

Clustering(32) Variable = 18P GAIN MUTATION ANALYSIS
D32V1, survival
                    sevent
clus2                  0   1
  18P GAIN MUTATED    78  41
  18P GAIN WILD-TYPE 161  97
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
               119                258 
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                41                 97 
$`18P GAIN MUTATED`
TCGA-18-3407 TCGA-18-3411 TCGA-18-3412 TCGA-18-3416 TCGA-18-4083 TCGA-21-1075 
        4.47        46.52        11.34        28.34         6.15        70.13 
TCGA-21-1079 TCGA-21-1082 TCGA-21-5783 TCGA-21-5784 TCGA-21-5786 TCGA-22-0944 
       31.69       119.80        88.08        41.69        33.93         7.33 
TCGA-22-4591 TCGA-22-4595 TCGA-22-4604 TCGA-22-4613 TCGA-22-5471 TCGA-22-5480 
       20.45        24.13        13.12        11.77        31.73        71.34 
TCGA-22-5483 TCGA-22-5489 TCGA-22-5491 TCGA-33-4532 TCGA-33-4566 TCGA-33-4586 
       18.84        62.86        56.32         7.63       173.79        14.07 
TCGA-34-2596 TCGA-34-2604 TCGA-34-5231 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 
        2.63        31.50        50.24         9.04        23.24        12.00 
TCGA-37-3792 TCGA-37-4141 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5027 
        0.39         0.39        74.07        44.71        68.58        60.76 
TCGA-39-5029 TCGA-39-5031 TCGA-39-5037 TCGA-39-5040 TCGA-43-2576 TCGA-43-2578 
       24.33        27.35        35.70        17.06        40.21        22.49 
TCGA-43-5670 TCGA-43-6143 TCGA-43-7657 TCGA-43-7658 TCGA-43-8118 TCGA-43-A474 
       18.05        12.36         1.58        66.51         2.93        11.61 
TCGA-43-A475 TCGA-46-6026 TCGA-51-4081 TCGA-52-7811 TCGA-56-5898 TCGA-56-7223 
        9.73        13.87        29.95         8.75        18.25         0.99 
TCGA-56-7580 TCGA-56-7730 TCGA-56-A49D TCGA-56-A4BX TCGA-56-A4BY TCGA-56-A5DS 
        1.32         0.20         0.99         1.51         0.99         0.26 
TCGA-58-8386 TCGA-58-8391 TCGA-58-8392 TCGA-58-A46N TCGA-60-2698 TCGA-60-2711 
        0.03        71.24        16.47        17.72        10.22        41.39 
TCGA-60-2712 TCGA-60-2722 TCGA-60-2725 TCGA-60-2726 TCGA-66-2734 TCGA-66-2758 
        9.01        29.85        26.79        11.77        43.10        20.98 
TCGA-66-2759 TCGA-66-2767 TCGA-66-2769 TCGA-66-2770 TCGA-66-2777 TCGA-66-2783 
       25.02         2.01         7.07        23.01         2.01        24.95 
TCGA-66-2787 TCGA-66-2793 TCGA-66-2794 TCGA-66-2800 TCGA-68-7755 TCGA-77-6845 
       40.01        10.06        54.08        49.05         2.73        23.28 
TCGA-77-7335 TCGA-77-7463 TCGA-77-7465 TCGA-77-8009 TCGA-77-8128 TCGA-77-8130 
       70.09        46.78        15.75        53.95        37.81        82.92 
TCGA-77-8143 TCGA-77-8150 TCGA-77-8153 TCGA-77-8156 TCGA-77-A5G3 TCGA-85-6561 
       26.40        54.41        55.33         0.33       117.57         0.79 
TCGA-85-6798 TCGA-85-7843 TCGA-85-7844 TCGA-85-8049 TCGA-85-8070 TCGA-85-8071 
        1.12         1.15         1.25         1.97        16.77        14.07 
TCGA-85-8276 TCGA-85-8277 TCGA-85-8352 TCGA-85-8353 TCGA-85-8354 TCGA-85-8664 
        0.43         0.36         2.20         1.78         2.01         0.10 
TCGA-85-8666 TCGA-85-A50M TCGA-90-7769 TCGA-90-A4EE TCGA-92-8064 TCGA-96-7545 
       15.58         0.62        11.77        10.88         5.26        44.15 
TCGA-98-8021 TCGA-J1-A4AH TCGA-L3-A4E7 TCGA-L3-A524 TCGA-NC-A5HI 
       13.58         7.30         1.15        14.76        37.32 

$`18P GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3414 TCGA-18-3415 
       12.16        81.07        79.46         4.80        13.02        59.51 
TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 
       24.92         1.61        43.76         2.79        90.51         3.02 
TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 TCGA-21-1072 TCGA-21-1076 TCGA-21-1077 
       27.16       119.54        46.88        99.16        60.89        34.78 
TCGA-21-1078 TCGA-21-1080 TCGA-21-1081 TCGA-21-1083 TCGA-21-5782 TCGA-21-5787 
       15.55       122.43         9.30         8.78        31.63        10.82 
TCGA-21-A5DI TCGA-22-0940 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 
       32.19        19.99        14.93         4.31        64.21         1.74 
TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 TCGA-22-4593 TCGA-22-4594 TCGA-22-4596 
       14.10        27.02        48.82        35.08        48.33         0.56 
TCGA-22-4599 TCGA-22-4601 TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 TCGA-22-5472 
       38.17        34.75        32.02        19.30         9.53        64.90 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 TCGA-22-5481 
       63.52        14.60        44.22         0.79        54.28        79.20 
TCGA-22-5482 TCGA-22-5485 TCGA-22-5492 TCGA-22-A5C4 TCGA-33-4533 TCGA-33-4538 
       11.74        30.08        16.60         0.95       114.05        97.94 
TCGA-33-4547 TCGA-33-4582 TCGA-33-4583 TCGA-33-4587 TCGA-33-4589 TCGA-33-6737 
       43.10       103.53       141.34        54.44        10.98        19.76 
TCGA-33-6738 TCGA-34-2600 TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 TCGA-34-5232 
       26.99        61.61        28.96        32.84        31.23        67.79 
TCGA-34-5234 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-34-7107 
       56.38        14.07        30.94        18.12         4.96         1.08 
TCGA-37-3783 TCGA-37-3789 TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 
        3.95         0.43         6.54         8.09         7.46         7.82 
TCGA-37-4135 TCGA-37-5819 TCGA-39-5011 TCGA-39-5022 TCGA-39-5024 TCGA-39-5028 
        6.81         3.39        47.80        55.17        70.03         1.71 
TCGA-39-5030 TCGA-39-5034 TCGA-39-5035 TCGA-39-5036 TCGA-39-5039 TCGA-43-2581 
        1.94        36.39        15.58        35.64        17.88        38.66 
TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 
       27.02        33.07        11.47        24.89        10.19         5.42 
TCGA-43-6773 TCGA-43-7656 TCGA-43-8115 TCGA-43-8116 TCGA-43-A56V TCGA-46-3768 
        3.78         6.97         6.64         6.35         5.06         9.96 
TCGA-46-6025 TCGA-51-4079 TCGA-51-4080 TCGA-52-7622 TCGA-52-7809 TCGA-52-7810 
       10.65         0.39         0.39        17.79         5.42        30.31 
TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 
       27.45        28.93         0.10         2.04         1.02         0.99 
TCGA-56-7222 TCGA-56-7579 TCGA-56-7582 TCGA-56-7822 TCGA-56-8503 TCGA-56-8504 
        0.43         1.45         0.85         0.03         1.35         5.82 
TCGA-56-8622 TCGA-56-8624 TCGA-56-8625 TCGA-56-8626 TCGA-56-8628 TCGA-56-8629 
        1.78         1.18         2.07         0.56         0.53         1.12 
TCGA-56-A4ZJ TCGA-56-A4ZK TCGA-58-8387 TCGA-58-8388 TCGA-58-8390 TCGA-58-8393 
        1.02         0.13        13.25        12.43        29.95        34.78 
TCGA-58-A46J TCGA-58-A46K TCGA-58-A46L TCGA-58-A46M TCGA-60-2695 TCGA-60-2696 
       64.87        34.36        36.59        23.24        21.07         3.58 
TCGA-60-2697 TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 
       12.23        96.82        37.94        92.71        21.70        80.42 
TCGA-60-2709 TCGA-60-2710 TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 
       49.48        66.51        56.91        50.33        35.34        48.49 
TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2723 TCGA-60-2724 TCGA-66-2727 
       42.61         3.16        32.28        35.90        23.57        16.96 
TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 
        2.01        21.07         0.99         1.02         2.01         0.92 
TCGA-66-2756 TCGA-66-2757 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2768 
        0.99         0.99         0.99         2.01         1.02         2.01 
TCGA-66-2771 TCGA-66-2773 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 
       19.00         3.02        19.00        12.03         3.98        12.00 
TCGA-66-2785 TCGA-66-2786 TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 
        1.94        25.97        22.98         4.04        22.98         5.03 
TCGA-66-2792 TCGA-66-2795 TCGA-68-7756 TCGA-68-7757 TCGA-68-8250 TCGA-68-8251 
       30.02         4.01         6.64         6.94         8.02         3.12 
TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 TCGA-77-7138 TCGA-77-7139 TCGA-77-7140 
       29.56        73.08        75.09        11.18        89.95        20.78 
TCGA-77-7141 TCGA-77-7142 TCGA-77-7337 TCGA-77-7338 TCGA-77-8007 TCGA-77-8008 
        0.49        42.25       106.95         0.16         6.51        86.76 
TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 
       12.59        53.92        39.09        17.69       104.09        11.54 
TCGA-77-8144 TCGA-77-8145 TCGA-77-8148 TCGA-77-8154 TCGA-77-A5FZ TCGA-77-A5GB 
       27.39         6.97         9.63        35.90       126.18        30.81 
TCGA-77-A5GH TCGA-85-6560 TCGA-85-7696 TCGA-85-7697 TCGA-85-7698 TCGA-85-7699 
       23.44         0.36         0.59         0.33         1.61         0.03 
TCGA-85-7950 TCGA-85-8048 TCGA-85-8052 TCGA-85-8072 TCGA-85-8287 TCGA-85-8288 
        1.97         0.85         0.53         1.18         1.45         1.78 
TCGA-85-8350 TCGA-85-8351 TCGA-85-8355 TCGA-85-8479 TCGA-85-8481 TCGA-85-8580 
        1.97         1.81         0.66         0.72         0.66        14.60 
TCGA-85-8582 TCGA-85-A4CL TCGA-85-A4QR TCGA-85-A513 TCGA-85-A53L TCGA-90-6837 
       13.91         0.46         0.82         0.79         0.43        24.89 
TCGA-90-7766 TCGA-90-7767 TCGA-90-7964 TCGA-90-A4ED TCGA-92-7340 TCGA-92-7341 
        9.50         2.93        14.07         8.02         2.70         3.48 
TCGA-92-8063 TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 TCGA-94-7943 TCGA-96-7544 
        4.01         2.27         2.86         0.16        11.70        39.88 
TCGA-96-8169 TCGA-96-8170 TCGA-96-A4JK TCGA-96-A4JL TCGA-98-7454 TCGA-98-8020 
        6.18         6.90         8.98         6.02         8.42         2.73 
TCGA-98-8022 TCGA-98-8023 TCGA-LA-A446 TCGA-MF-A522 TCGA-NC-A5HE TCGA-NC-A5HG 
        7.33        10.13         1.18         3.02        56.61        50.86 

  18P GAIN MUTATED 18P GAIN WILD-TYPE 
              0.03               0.03 
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
            173.79             141.34 
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
            16.470             12.015 
[1] "0.0 - 173.8 (16.5)" "0.0 - 141.3 (12.0)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-22-A5C4         TCGA-33-4532         TCGA-33-4533 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-33-4538         TCGA-33-4547         TCGA-33-4566 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-33-4582         TCGA-33-4583         TCGA-33-4586 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-33-4587         TCGA-33-4589         TCGA-33-6737 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-33-6738         TCGA-34-2596         TCGA-34-2600 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-34-2604         TCGA-34-2605         TCGA-34-2608 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-34-2609         TCGA-34-5231         TCGA-34-5232 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-34-5234         TCGA-34-5236         TCGA-34-5239 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-34-5240         TCGA-34-5241         TCGA-34-5927 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-34-5928         TCGA-34-5929         TCGA-34-7107 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-3792 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4132 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-37-4133         TCGA-37-4135         TCGA-37-4141 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-37-5819         TCGA-39-5011         TCGA-39-5016 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-39-5019         TCGA-39-5021         TCGA-39-5022 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-39-5024         TCGA-39-5027         TCGA-39-5028 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-39-5029         TCGA-39-5030         TCGA-39-5031 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-39-5034         TCGA-39-5035         TCGA-39-5036 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-39-5037         TCGA-39-5039         TCGA-39-5040 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-43-8115         TCGA-43-8116         TCGA-43-8118 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-43-A474         TCGA-43-A475         TCGA-43-A56V 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-46-3768         TCGA-46-6025         TCGA-46-6026 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-51-4079         TCGA-51-4080         TCGA-51-4081 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-52-7622         TCGA-52-7809         TCGA-52-7810 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-52-7811         TCGA-52-7812         TCGA-56-1622 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-56-5897         TCGA-56-5898         TCGA-56-6545 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-56-6546         TCGA-56-7221         TCGA-56-7222 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-56-7223         TCGA-56-7579         TCGA-56-7580 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-56-7582         TCGA-56-7730         TCGA-56-7822 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-56-8503         TCGA-56-8504         TCGA-56-8622 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-56-8624         TCGA-56-8625         TCGA-56-8626 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-56-8628         TCGA-56-8629         TCGA-56-A49D 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-56-A4BX         TCGA-56-A4BY         TCGA-56-A4ZJ 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-56-A4ZK         TCGA-56-A5DS         TCGA-58-8386 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-58-8387         TCGA-58-8388         TCGA-58-8390 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-58-8391         TCGA-58-8392         TCGA-58-8393 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-58-A46J         TCGA-58-A46K         TCGA-58-A46L 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-58-A46M         TCGA-58-A46N         TCGA-60-2695 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-60-2696         TCGA-60-2697         TCGA-60-2698 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-60-2703         TCGA-60-2704         TCGA-60-2706 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2756 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-66-2770         TCGA-66-2771         TCGA-66-2773 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-66-2785         TCGA-66-2786         TCGA-66-2787 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-68-7755         TCGA-68-7756         TCGA-68-7757 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-68-8250         TCGA-68-8251         TCGA-77-6842 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-77-6843         TCGA-77-6844         TCGA-77-6845 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-77-7138         TCGA-77-7139         TCGA-77-7140 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-77-7141         TCGA-77-7142         TCGA-77-7335 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-77-7337         TCGA-77-7338         TCGA-77-7463 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-77-7465         TCGA-77-8007         TCGA-77-8008 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-77-8009         TCGA-77-8128         TCGA-77-8130 
  "18P GAIN MUTATED"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-77-8131         TCGA-77-8133         TCGA-77-8136 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-77-8138         TCGA-77-8139         TCGA-77-8140 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-77-8143         TCGA-77-8144         TCGA-77-8145 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-77-8148         TCGA-77-8150         TCGA-77-8153 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-77-8154         TCGA-77-8156         TCGA-77-A5FZ 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-77-A5G3         TCGA-77-A5GB         TCGA-77-A5GH 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-96-8169         TCGA-96-8170         TCGA-96-A4JK 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-96-A4JL         TCGA-98-7454         TCGA-98-8020 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
  "18P GAIN MUTATED"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-LA-A446         TCGA-MF-A522         TCGA-NC-A5HE 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-22-A5C4         TCGA-33-4532         TCGA-33-4533 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-33-4538         TCGA-33-4547         TCGA-33-4566 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-33-4582         TCGA-33-4583         TCGA-33-4586 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-33-4587         TCGA-33-4589         TCGA-33-6737 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-33-6738         TCGA-34-2596         TCGA-34-2600 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-34-2604         TCGA-34-2605         TCGA-34-2608 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-34-2609         TCGA-34-5231         TCGA-34-5232 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-34-5234         TCGA-34-5236         TCGA-34-5239 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-34-5240         TCGA-34-5241         TCGA-34-5927 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-34-5928         TCGA-34-5929         TCGA-34-7107 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-3792 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4132 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-37-4133         TCGA-37-4135         TCGA-37-4141 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-37-5819         TCGA-39-5011         TCGA-39-5016 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-39-5019         TCGA-39-5021         TCGA-39-5022 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-39-5024         TCGA-39-5027         TCGA-39-5028 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-39-5029         TCGA-39-5030         TCGA-39-5031 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-39-5034         TCGA-39-5035         TCGA-39-5036 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-39-5037         TCGA-39-5039         TCGA-39-5040 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-43-8115         TCGA-43-8116         TCGA-43-8118 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-43-A474         TCGA-43-A475         TCGA-43-A56V 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-46-3768         TCGA-46-6025         TCGA-46-6026 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-51-4079         TCGA-51-4080         TCGA-51-4081 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-52-7622         TCGA-52-7809         TCGA-52-7810 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-52-7811         TCGA-52-7812         TCGA-56-1622 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-56-5897         TCGA-56-5898         TCGA-56-6545 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-56-6546         TCGA-56-7221         TCGA-56-7222 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-56-7223         TCGA-56-7579         TCGA-56-7580 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-56-7582         TCGA-56-7730         TCGA-56-7822 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-56-8503         TCGA-56-8504         TCGA-56-8622 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-56-8624         TCGA-56-8625         TCGA-56-8626 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-56-8628         TCGA-56-8629         TCGA-56-A49D 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-56-A4BX         TCGA-56-A4BY         TCGA-56-A4ZJ 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-56-A4ZK         TCGA-56-A5DS         TCGA-58-8386 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-58-8387         TCGA-58-8388         TCGA-58-8390 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-58-8391         TCGA-58-8392         TCGA-58-8393 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-58-A46J         TCGA-58-A46K         TCGA-58-A46L 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-58-A46M         TCGA-58-A46N         TCGA-60-2695 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-60-2696         TCGA-60-2697         TCGA-60-2698 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-60-2703         TCGA-60-2704         TCGA-60-2706 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2756 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-66-2770         TCGA-66-2771         TCGA-66-2773 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-66-2785         TCGA-66-2786         TCGA-66-2787 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-68-7755         TCGA-68-7756         TCGA-68-7757 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-68-8250         TCGA-68-8251         TCGA-77-6842 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-77-6843         TCGA-77-6844         TCGA-77-6845 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-77-7138         TCGA-77-7139         TCGA-77-7140 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-77-7141         TCGA-77-7142         TCGA-77-7335 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-77-7337         TCGA-77-7338         TCGA-77-7463 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-77-7465         TCGA-77-8007         TCGA-77-8008 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-77-8009         TCGA-77-8128         TCGA-77-8130 
  "18P GAIN MUTATED"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-77-8131         TCGA-77-8133         TCGA-77-8136 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-77-8138         TCGA-77-8139         TCGA-77-8140 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-77-8143         TCGA-77-8144         TCGA-77-8145 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-77-8148         TCGA-77-8150         TCGA-77-8153 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-77-8154         TCGA-77-8156         TCGA-77-A5FZ 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-77-A5G3         TCGA-77-A5GB         TCGA-77-A5GH 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-96-8169         TCGA-96-8170         TCGA-96-A4JK 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-96-A4JL         TCGA-98-7454         TCGA-98-8020 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
  "18P GAIN MUTATED"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-LA-A446         TCGA-MF-A522         TCGA-NC-A5HE 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-22-A5C4         TCGA-33-4532         TCGA-33-4533 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-33-4538         TCGA-33-4547         TCGA-33-4566 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-33-4582         TCGA-33-4583         TCGA-33-4586 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-33-4587         TCGA-33-4589         TCGA-33-6737 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-33-6738         TCGA-34-2596         TCGA-34-2600 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-34-2604         TCGA-34-2605         TCGA-34-2608 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-34-2609         TCGA-34-5231         TCGA-34-5232 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-34-5234         TCGA-34-5236         TCGA-34-5239 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-34-5240         TCGA-34-5241         TCGA-34-5927 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-34-5928         TCGA-34-5929         TCGA-34-7107 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-3792 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4132 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-37-4133         TCGA-37-4135         TCGA-37-4141 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-37-5819         TCGA-39-5011         TCGA-39-5016 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-39-5019         TCGA-39-5021         TCGA-39-5022 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-39-5024         TCGA-39-5027         TCGA-39-5028 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-39-5029         TCGA-39-5030         TCGA-39-5031 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-39-5034         TCGA-39-5035         TCGA-39-5036 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-39-5037         TCGA-39-5039         TCGA-39-5040 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-43-8115         TCGA-43-8116         TCGA-43-8118 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-43-A474         TCGA-43-A475         TCGA-43-A56V 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-46-3768         TCGA-46-6025         TCGA-46-6026 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-51-4079         TCGA-51-4080         TCGA-51-4081 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-52-7622         TCGA-52-7809         TCGA-52-7810 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-52-7811         TCGA-52-7812         TCGA-56-1622 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-56-5897         TCGA-56-5898         TCGA-56-6545 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-56-6546         TCGA-56-7221         TCGA-56-7222 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-56-7223         TCGA-56-7579         TCGA-56-7580 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-56-7582         TCGA-56-7730         TCGA-56-7822 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-56-8503         TCGA-56-8504         TCGA-56-8622 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-56-8624         TCGA-56-8625         TCGA-56-8626 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-56-8628         TCGA-56-8629         TCGA-56-A49D 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-56-A4BX         TCGA-56-A4BY         TCGA-56-A4ZJ 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-56-A4ZK         TCGA-56-A5DS         TCGA-58-8386 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-58-8387         TCGA-58-8388         TCGA-58-8390 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-58-8391         TCGA-58-8392         TCGA-58-8393 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-58-A46J         TCGA-58-A46K         TCGA-58-A46L 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-58-A46M         TCGA-58-A46N         TCGA-60-2695 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-60-2696         TCGA-60-2697         TCGA-60-2698 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-60-2703         TCGA-60-2704         TCGA-60-2706 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2756 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-66-2770         TCGA-66-2771         TCGA-66-2773 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-66-2785         TCGA-66-2786         TCGA-66-2787 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-68-7755         TCGA-68-7756         TCGA-68-7757 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-68-8250         TCGA-68-8251         TCGA-77-6842 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-77-6843         TCGA-77-6844         TCGA-77-6845 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-77-7138         TCGA-77-7139         TCGA-77-7140 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-77-7141         TCGA-77-7142         TCGA-77-7335 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-77-7337         TCGA-77-7338         TCGA-77-7463 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-77-7465         TCGA-77-8007         TCGA-77-8008 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-77-8009         TCGA-77-8128         TCGA-77-8130 
  "18P GAIN MUTATED"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-77-8131         TCGA-77-8133         TCGA-77-8136 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-77-8138         TCGA-77-8139         TCGA-77-8140 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-77-8143         TCGA-77-8144         TCGA-77-8145 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-77-8148         TCGA-77-8150         TCGA-77-8153 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-77-8154         TCGA-77-8156         TCGA-77-A5FZ 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-77-A5G3         TCGA-77-A5GB         TCGA-77-A5GH 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-96-8169         TCGA-96-8170         TCGA-96-A4JK 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-96-A4JL         TCGA-98-7454         TCGA-98-8020 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
  "18P GAIN MUTATED"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-LA-A446         TCGA-MF-A522         TCGA-NC-A5HE 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
[1] "hr=" "1.2"
D32V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  18P GAIN MUTATED         0       18       39        0        19        23
  18P GAIN WILD-TYPE       1       50       94        1        31        48
                    vv
clus                 STAGE IIIA STAGE IIIB STAGE IV
  18P GAIN MUTATED           19          9        1
  18P GAIN WILD-TYPE         35         11        4
D32V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  18P GAIN MUTATED    24  81  17   6
  18P GAIN WILD-TYPE  69 169  27  13
D32V4, multiclass
    clus
vv   18P GAIN MUTATED 18P GAIN WILD-TYPE
  T1               24                 69
  T2               81                169
  T3               17                 27
  T4                6                 13
                    vv
clus                  N0  N1  N2  N3
  18P GAIN MUTATED    73  38  14   2
  18P GAIN WILD-TYPE 180  71  20   3
D32V5, multiclass
    clus
vv   18P GAIN MUTATED 18P GAIN WILD-TYPE
  N0               73                180
  N1               38                 71
  N2               14                 20
  N3                2                  3
                    vv
clus                  M0  M1  MX
  18P GAIN MUTATED   114   1  12
  18P GAIN WILD-TYPE 234   4  35
D32V6, multiclass
    clus
vv   18P GAIN MUTATED 18P GAIN WILD-TYPE
  M0              114                234
  M1                1                  4
  MX               12                 35
D32V7, binary
                    cls
clus                   0   1
  18P GAIN MUTATED    27 101
  18P GAIN WILD-TYPE  74 204
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18P GAIN MUTATED     27  101
  18P GAIN WILD-TYPE   74  204
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  FEMALE               27                 74
  MALE                101                204
D32V8, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  18P GAIN MUTATED                                       4
  18P GAIN WILD-TYPE                                     8
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  18P GAIN MUTATED                                        1
  18P GAIN WILD-TYPE                                      5
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  18P GAIN MUTATED                                         0
  18P GAIN WILD-TYPE                                       1
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  18P GAIN MUTATED                                                           123
  18P GAIN WILD-TYPE                                                         264
D32V9, multiclass
                                                             clus
vv                                                            18P GAIN MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      4
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                     1
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                    0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              123
                                                             clus
vv                                                            18P GAIN WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                        8
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                       5
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                      1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                264
D32V10, binary
                    cls
clus                   0   1
  18P GAIN MUTATED     6 122
  18P GAIN WILD-TYPE   6 272
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18P GAIN MUTATED      6  122
  18P GAIN WILD-TYPE    6  272
     clus
vv    18P GAIN MUTATED 18P GAIN WILD-TYPE
  NO                 6                  6
  YES              122                272
D32V11, continuous
D32V12, continuous
                    vv
clus                  R0  R1  R2  RX
  18P GAIN MUTATED   104   2   3   6
  18P GAIN WILD-TYPE 226   6   1  12
D32V13, multiclass
    clus
vv   18P GAIN MUTATED 18P GAIN WILD-TYPE
  R0              104                226
  R1                2                  6
  R2                3                  1
  RX                6                 12

Clustering(33) Variable = 18Q GAIN MUTATION ANALYSIS
D33V1, survival
                    sevent
clus2                  0   1
  18Q GAIN MUTATED    57  35
  18Q GAIN WILD-TYPE 182 103
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                92                285 
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                35                103 
$`18Q GAIN MUTATED`
TCGA-18-3407 TCGA-18-3411 TCGA-18-4083 TCGA-21-1075 TCGA-21-1082 TCGA-21-5783 
        4.47        46.52         6.15        70.13       119.80        88.08 
TCGA-21-5784 TCGA-22-1012 TCGA-22-4595 TCGA-22-4604 TCGA-22-4613 TCGA-22-5471 
       41.69        14.10        24.13        13.12        11.77        31.73 
TCGA-22-5478 TCGA-22-5480 TCGA-22-5481 TCGA-22-5483 TCGA-22-5489 TCGA-22-5491 
        0.79        71.34        79.20        18.84        62.86        56.32 
TCGA-33-4532 TCGA-33-4566 TCGA-33-4582 TCGA-33-4586 TCGA-34-2596 TCGA-34-2604 
        7.63       173.79       103.53        14.07         2.63        31.50 
TCGA-34-2609 TCGA-34-5236 TCGA-34-5239 TCGA-37-4141 TCGA-39-5016 TCGA-39-5019 
       31.23         9.04        23.24         0.39        74.07        44.71 
TCGA-39-5021 TCGA-39-5029 TCGA-39-5031 TCGA-39-5037 TCGA-39-5040 TCGA-43-2578 
       68.58        24.33        27.35        35.70        17.06        22.49 
TCGA-43-3920 TCGA-43-6143 TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 TCGA-43-A475 
       33.07        12.36         1.58        66.51         6.64         9.73 
TCGA-46-6026 TCGA-51-4081 TCGA-52-7811 TCGA-56-5898 TCGA-56-7580 TCGA-56-7730 
       13.87        29.95         8.75        18.25         1.32         0.20 
TCGA-56-A49D TCGA-56-A4BX TCGA-58-8392 TCGA-58-A46N TCGA-60-2695 TCGA-60-2711 
        0.99         1.51        16.47        17.72        21.07        41.39 
TCGA-60-2712 TCGA-60-2722 TCGA-60-2725 TCGA-66-2758 TCGA-66-2759 TCGA-66-2769 
        9.01        29.85        26.79        20.98        25.02         7.07 
TCGA-66-2770 TCGA-66-2777 TCGA-66-2787 TCGA-66-2793 TCGA-66-2794 TCGA-66-2800 
       23.01         2.01        40.01        10.06        54.08        49.05 
TCGA-68-7755 TCGA-77-7463 TCGA-77-7465 TCGA-77-8009 TCGA-77-8128 TCGA-77-8143 
        2.73        46.78        15.75        53.95        37.81        26.40 
TCGA-77-8150 TCGA-77-8153 TCGA-77-8156 TCGA-85-6561 TCGA-85-6798 TCGA-85-7843 
       54.41        55.33         0.33         0.79         1.12         1.15 
TCGA-85-7950 TCGA-85-8070 TCGA-85-8071 TCGA-85-8277 TCGA-85-8664 TCGA-85-8666 
        1.97        16.77        14.07         0.36         0.10        15.58 
TCGA-85-A50M TCGA-90-A4EE TCGA-92-8064 TCGA-96-7545 TCGA-98-8021 TCGA-J1-A4AH 
        0.62        10.88         5.26        44.15        13.58         7.30 
TCGA-L3-A4E7 TCGA-MF-A522 
        1.15         3.02 

$`18Q GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3412 TCGA-18-3414 
       12.16        81.07        79.46         4.80        11.34        13.02 
TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4086 
       59.51        28.34        24.92         1.61        43.76         2.79 
TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 TCGA-21-1072 
       90.51         3.02        27.16       119.54        46.88        99.16 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1079 TCGA-21-1080 TCGA-21-1081 
       60.89        34.78        15.55        31.69       122.43         9.30 
TCGA-21-1083 TCGA-21-5782 TCGA-21-5786 TCGA-21-5787 TCGA-21-A5DI TCGA-22-0940 
        8.78        31.63        33.93        10.82        32.19        19.99 
TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 TCGA-22-1016 
        7.33        14.93         4.31        64.21         1.74        27.02 
TCGA-22-1017 TCGA-22-4591 TCGA-22-4593 TCGA-22-4594 TCGA-22-4596 TCGA-22-4599 
       48.82        20.45        35.08        48.33         0.56        38.17 
TCGA-22-4601 TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 TCGA-22-5472 TCGA-22-5473 
       34.75        32.02        19.30         9.53        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5479 TCGA-22-5482 TCGA-22-5485 TCGA-22-5492 
       14.60        44.22        54.28        11.74        30.08        16.60 
TCGA-22-A5C4 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4583 TCGA-33-4587 
        0.95       114.05        97.94        43.10       141.34        54.44 
TCGA-33-4589 TCGA-33-6737 TCGA-33-6738 TCGA-34-2600 TCGA-34-2605 TCGA-34-2608 
       10.98        19.76        26.99        61.61        28.96        32.84 
TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 
       50.24        67.79        56.38        12.00        14.07        30.94 
TCGA-34-5928 TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 
       18.12         4.96         1.08         3.95         0.43         0.39 
TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 TCGA-37-5819 
        6.54         8.09         7.46         7.82         6.81         3.39 
TCGA-39-5011 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5030 
       47.80        55.17        70.03        60.76         1.71         1.94 
TCGA-39-5034 TCGA-39-5035 TCGA-39-5036 TCGA-39-5039 TCGA-43-2576 TCGA-43-2581 
       36.39        15.58        35.64        17.88        40.21        38.66 
TCGA-43-3394 TCGA-43-5668 TCGA-43-5670 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 
       27.02        11.47        18.05        24.89        10.19         5.42 
TCGA-43-6773 TCGA-43-7656 TCGA-43-8116 TCGA-43-8118 TCGA-43-A474 TCGA-43-A56V 
        3.78         6.97         6.35         2.93        11.61         5.06 
TCGA-46-3768 TCGA-46-6025 TCGA-51-4079 TCGA-51-4080 TCGA-52-7622 TCGA-52-7809 
        9.96        10.65         0.39         0.39        17.79         5.42 
TCGA-52-7810 TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 
       30.31        27.45        28.93         0.10         2.04         1.02 
TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 TCGA-56-7582 TCGA-56-7822 
        0.99         0.43         0.99         1.45         0.85         0.03 
TCGA-56-8503 TCGA-56-8504 TCGA-56-8622 TCGA-56-8624 TCGA-56-8625 TCGA-56-8626 
        1.35         5.82         1.78         1.18         2.07         0.56 
TCGA-56-8628 TCGA-56-8629 TCGA-56-A4BY TCGA-56-A4ZJ TCGA-56-A4ZK TCGA-56-A5DS 
        0.53         1.12         0.99         1.02         0.13         0.26 
TCGA-58-8386 TCGA-58-8387 TCGA-58-8388 TCGA-58-8390 TCGA-58-8391 TCGA-58-8393 
        0.03        13.25        12.43        29.95        71.24        34.78 
TCGA-58-A46J TCGA-58-A46K TCGA-58-A46L TCGA-58-A46M TCGA-60-2696 TCGA-60-2697 
       64.87        34.36        36.59        23.24         3.58        12.23 
TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 
       10.22        96.82        37.94        92.71        21.70        80.42 
TCGA-60-2709 TCGA-60-2710 TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 
       49.48        66.51        56.91        50.33        35.34        48.49 
TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2723 TCGA-60-2724 TCGA-60-2726 
       42.61         3.16        32.28        35.90        23.57        11.77 
TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 
       16.96        43.10         2.01        21.07         0.99         1.02 
TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2763 TCGA-66-2765 
        2.01         0.92         0.99         0.99         0.99         2.01 
TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2771 TCGA-66-2773 TCGA-66-2778 
        1.02         2.01         2.01        19.00         3.02        19.00 
TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 
       12.03         3.98        12.00        24.95         1.94        25.97 
TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 TCGA-66-2792 TCGA-66-2795 
       22.98         4.04        22.98         5.03        30.02         4.01 
TCGA-68-7756 TCGA-68-7757 TCGA-68-8250 TCGA-68-8251 TCGA-77-6842 TCGA-77-6843 
        6.64         6.94         8.02         3.12        29.56        73.08 
TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 
       75.09        23.28        11.18        89.95        20.78         0.49 
TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 TCGA-77-8007 TCGA-77-8008 
       42.25        70.09       106.95         0.16         6.51        86.76 
TCGA-77-8130 TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 
       82.92        12.59        53.92        39.09        17.69       104.09 
TCGA-77-8140 TCGA-77-8144 TCGA-77-8145 TCGA-77-8148 TCGA-77-8154 TCGA-77-A5FZ 
       11.54        27.39         6.97         9.63        35.90       126.18 
TCGA-77-A5G3 TCGA-77-A5GB TCGA-77-A5GH TCGA-85-6560 TCGA-85-7696 TCGA-85-7697 
      117.57        30.81        23.44         0.36         0.59         0.33 
TCGA-85-7698 TCGA-85-7699 TCGA-85-7844 TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 
        1.61         0.03         1.25         0.85         1.97         0.53 
TCGA-85-8072 TCGA-85-8276 TCGA-85-8287 TCGA-85-8288 TCGA-85-8350 TCGA-85-8351 
        1.18         0.43         1.45         1.78         1.97         1.81 
TCGA-85-8352 TCGA-85-8353 TCGA-85-8354 TCGA-85-8355 TCGA-85-8479 TCGA-85-8481 
        2.20         1.78         2.01         0.66         0.72         0.66 
TCGA-85-8580 TCGA-85-8582 TCGA-85-A4CL TCGA-85-A4QR TCGA-85-A513 TCGA-85-A53L 
       14.60        13.91         0.46         0.82         0.79         0.43 
TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 TCGA-90-7769 TCGA-90-7964 TCGA-90-A4ED 
       24.89         9.50         2.93        11.77        14.07         8.02 
TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 
        2.70         3.48         4.01         2.27         2.86         0.16 
TCGA-94-7943 TCGA-96-7544 TCGA-96-8169 TCGA-96-8170 TCGA-96-A4JK TCGA-96-A4JL 
       11.70        39.88         6.18         6.90         8.98         6.02 
TCGA-98-7454 TCGA-98-8020 TCGA-98-8022 TCGA-98-8023 TCGA-L3-A524 TCGA-LA-A446 
        8.42         2.73         7.33        10.13        14.76         1.18 
TCGA-NC-A5HE TCGA-NC-A5HG TCGA-NC-A5HI 
       56.61        50.86        37.32 

  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
              0.10               0.03 
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
            173.79             141.34 
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
             17.39              11.77 
[1] "0.1 - 173.8 (17.4)" "0.0 - 141.3 (11.8)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED"   "18Q GAIN MUTATED" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED"   "18Q GAIN MUTATED" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
  "18Q GAIN MUTATED"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-22-A5C4         TCGA-33-4532         TCGA-33-4533 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-33-4538         TCGA-33-4547         TCGA-33-4566 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-33-4582         TCGA-33-4583         TCGA-33-4586 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-33-4587         TCGA-33-4589         TCGA-33-6737 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-33-6738         TCGA-34-2596         TCGA-34-2600 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-34-2604         TCGA-34-2605         TCGA-34-2608 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-34-2609         TCGA-34-5231         TCGA-34-5232 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-34-5234         TCGA-34-5236         TCGA-34-5239 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED"   "18Q GAIN MUTATED" 
        TCGA-34-5240         TCGA-34-5241         TCGA-34-5927 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-34-5928         TCGA-34-5929         TCGA-34-7107 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-3792 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4132 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-37-4133         TCGA-37-4135         TCGA-37-4141 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-37-5819         TCGA-39-5011         TCGA-39-5016 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-39-5019         TCGA-39-5021         TCGA-39-5022 
  "18Q GAIN MUTATED"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-39-5024         TCGA-39-5027         TCGA-39-5028 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-39-5029         TCGA-39-5030         TCGA-39-5031 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-39-5034         TCGA-39-5035         TCGA-39-5036 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-39-5037         TCGA-39-5039         TCGA-39-5040 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED"   "18Q GAIN MUTATED" 
        TCGA-43-8115         TCGA-43-8116         TCGA-43-8118 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-43-A474         TCGA-43-A475         TCGA-43-A56V 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-46-3768         TCGA-46-6025         TCGA-46-6026 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-51-4079         TCGA-51-4080         TCGA-51-4081 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-52-7622         TCGA-52-7809         TCGA-52-7810 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-52-7811         TCGA-52-7812         TCGA-56-1622 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-56-5897         TCGA-56-5898         TCGA-56-6545 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-56-6546         TCGA-56-7221         TCGA-56-7222 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-56-7223         TCGA-56-7579         TCGA-56-7580 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-56-7582         TCGA-56-7730         TCGA-56-7822 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-56-8503         TCGA-56-8504         TCGA-56-8622 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-56-8624         TCGA-56-8625         TCGA-56-8626 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-56-8628         TCGA-56-8629         TCGA-56-A49D 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-56-A4BX         TCGA-56-A4BY         TCGA-56-A4ZJ 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-56-A4ZK         TCGA-56-A5DS         TCGA-58-8386 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-58-8387         TCGA-58-8388         TCGA-58-8390 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-58-8391         TCGA-58-8392         TCGA-58-8393 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-58-A46J         TCGA-58-A46K         TCGA-58-A46L 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-58-A46M         TCGA-58-A46N         TCGA-60-2695 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED"   "18Q GAIN MUTATED" 
        TCGA-60-2696         TCGA-60-2697         TCGA-60-2698 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-60-2703         TCGA-60-2704         TCGA-60-2706 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED"   "18Q GAIN MUTATED" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2756 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED"   "18Q GAIN MUTATED" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-66-2770         TCGA-66-2771         TCGA-66-2773 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-66-2785         TCGA-66-2786         TCGA-66-2787 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-68-7755         TCGA-68-7756         TCGA-68-7757 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-68-8250         TCGA-68-8251         TCGA-77-6842 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-77-6843         TCGA-77-6844         TCGA-77-6845 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-77-7138         TCGA-77-7139         TCGA-77-7140 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-77-7141         TCGA-77-7142         TCGA-77-7335 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-77-7337         TCGA-77-7338         TCGA-77-7463 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-77-7465         TCGA-77-8007         TCGA-77-8008 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-77-8009         TCGA-77-8128         TCGA-77-8130 
  "18Q GAIN MUTATED"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-77-8131         TCGA-77-8133         TCGA-77-8136 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-77-8138         TCGA-77-8139         TCGA-77-8140 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-77-8143         TCGA-77-8144         TCGA-77-8145 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-77-8148         TCGA-77-8150         TCGA-77-8153 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED"   "18Q GAIN MUTATED" 
        TCGA-77-8154         TCGA-77-8156         TCGA-77-A5FZ 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-77-A5G3         TCGA-77-A5GB         TCGA-77-A5GH 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED"   "18Q GAIN MUTATED" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED"   "18Q GAIN MUTATED" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
  "18Q GAIN MUTATED"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-96-8169         TCGA-96-8170         TCGA-96-A4JK 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-96-A4JL         TCGA-98-7454         TCGA-98-8020 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
  "18Q GAIN MUTATED"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-LA-A446         TCGA-MF-A522         TCGA-NC-A5HE 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
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"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED"   "18Q GAIN MUTATED" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
  "18Q GAIN MUTATED"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-22-A5C4         TCGA-33-4532         TCGA-33-4533 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-33-4538         TCGA-33-4547         TCGA-33-4566 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-33-4582         TCGA-33-4583         TCGA-33-4586 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-33-4587         TCGA-33-4589         TCGA-33-6737 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-33-6738         TCGA-34-2596         TCGA-34-2600 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-34-2604         TCGA-34-2605         TCGA-34-2608 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-34-2609         TCGA-34-5231         TCGA-34-5232 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-34-5234         TCGA-34-5236         TCGA-34-5239 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED"   "18Q GAIN MUTATED" 
        TCGA-34-5240         TCGA-34-5241         TCGA-34-5927 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-34-5928         TCGA-34-5929         TCGA-34-7107 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-3792 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4132 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-37-4133         TCGA-37-4135         TCGA-37-4141 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-37-5819         TCGA-39-5011         TCGA-39-5016 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-39-5019         TCGA-39-5021         TCGA-39-5022 
  "18Q GAIN MUTATED"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-39-5024         TCGA-39-5027         TCGA-39-5028 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-39-5029         TCGA-39-5030         TCGA-39-5031 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-39-5034         TCGA-39-5035         TCGA-39-5036 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-39-5037         TCGA-39-5039         TCGA-39-5040 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED"   "18Q GAIN MUTATED" 
        TCGA-43-8115         TCGA-43-8116         TCGA-43-8118 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-43-A474         TCGA-43-A475         TCGA-43-A56V 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-46-3768         TCGA-46-6025         TCGA-46-6026 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-51-4079         TCGA-51-4080         TCGA-51-4081 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-52-7622         TCGA-52-7809         TCGA-52-7810 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-52-7811         TCGA-52-7812         TCGA-56-1622 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-56-5897         TCGA-56-5898         TCGA-56-6545 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-56-6546         TCGA-56-7221         TCGA-56-7222 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-56-7223         TCGA-56-7579         TCGA-56-7580 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-56-7582         TCGA-56-7730         TCGA-56-7822 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-56-8503         TCGA-56-8504         TCGA-56-8622 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-56-8624         TCGA-56-8625         TCGA-56-8626 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-56-8628         TCGA-56-8629         TCGA-56-A49D 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-56-A4BX         TCGA-56-A4BY         TCGA-56-A4ZJ 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-56-A4ZK         TCGA-56-A5DS         TCGA-58-8386 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-58-8387         TCGA-58-8388         TCGA-58-8390 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-58-8391         TCGA-58-8392         TCGA-58-8393 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-58-A46J         TCGA-58-A46K         TCGA-58-A46L 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-58-A46M         TCGA-58-A46N         TCGA-60-2695 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED"   "18Q GAIN MUTATED" 
        TCGA-60-2696         TCGA-60-2697         TCGA-60-2698 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-60-2703         TCGA-60-2704         TCGA-60-2706 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED"   "18Q GAIN MUTATED" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2756 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED"   "18Q GAIN MUTATED" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-66-2770         TCGA-66-2771         TCGA-66-2773 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-66-2785         TCGA-66-2786         TCGA-66-2787 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-68-7755         TCGA-68-7756         TCGA-68-7757 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-68-8250         TCGA-68-8251         TCGA-77-6842 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-77-6843         TCGA-77-6844         TCGA-77-6845 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-77-7138         TCGA-77-7139         TCGA-77-7140 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-77-7141         TCGA-77-7142         TCGA-77-7335 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-77-7337         TCGA-77-7338         TCGA-77-7463 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-77-7465         TCGA-77-8007         TCGA-77-8008 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-77-8009         TCGA-77-8128         TCGA-77-8130 
  "18Q GAIN MUTATED"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-77-8131         TCGA-77-8133         TCGA-77-8136 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-77-8138         TCGA-77-8139         TCGA-77-8140 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-77-8143         TCGA-77-8144         TCGA-77-8145 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-77-8148         TCGA-77-8150         TCGA-77-8153 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED"   "18Q GAIN MUTATED" 
        TCGA-77-8154         TCGA-77-8156         TCGA-77-A5FZ 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-77-A5G3         TCGA-77-A5GB         TCGA-77-A5GH 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED"   "18Q GAIN MUTATED" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED"   "18Q GAIN MUTATED" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
  "18Q GAIN MUTATED"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-96-8169         TCGA-96-8170         TCGA-96-A4JK 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-96-A4JL         TCGA-98-7454         TCGA-98-8020 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
  "18Q GAIN MUTATED"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-LA-A446         TCGA-MF-A522         TCGA-NC-A5HE 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D33V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  18Q GAIN MUTATED         0       16       34        0        15        15
  18Q GAIN WILD-TYPE       1       52       99        1        35        56
                    vv
clus                 STAGE IIIA STAGE IIIB STAGE IV
  18Q GAIN MUTATED           11          6        0
  18Q GAIN WILD-TYPE         43         14        5
D33V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  18Q GAIN MUTATED    21  64   7   5
  18Q GAIN WILD-TYPE  72 186  37  14
D33V4, multiclass
    clus
vv   18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  T1               21                 72
  T2               64                186
  T3                7                 37
  T4                5                 14
                    vv
clus                  N0  N1  N2  N3
  18Q GAIN MUTATED    60  27  10   0
  18Q GAIN WILD-TYPE 193  82  24   5
D33V5, multiclass
    clus
vv   18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  N0               60                193
  N1               27                 82
  N2               10                 24
  N3                0                  5
                    vv
clus                  M0  M1  MX
  18Q GAIN MUTATED    87   0   9
  18Q GAIN WILD-TYPE 261   5  38
D33V6, multiclass
    clus
vv   18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  M0               87                261
  M1                0                  5
  MX                9                 38
D33V7, binary
                    cls
clus                   0   1
  18Q GAIN MUTATED    21  76
  18Q GAIN WILD-TYPE  80 229
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18Q GAIN MUTATED     21   76
  18Q GAIN WILD-TYPE   80  229
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  FEMALE               21                 80
  MALE                 76                229
D33V8, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  18Q GAIN MUTATED                                       4
  18Q GAIN WILD-TYPE                                     8
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  18Q GAIN MUTATED                                        0
  18Q GAIN WILD-TYPE                                      6
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  18Q GAIN MUTATED                                         0
  18Q GAIN WILD-TYPE                                       1
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  18Q GAIN MUTATED                                                            93
  18Q GAIN WILD-TYPE                                                         294
D33V9, multiclass
                                                             clus
vv                                                            18Q GAIN MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      4
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                     0
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                    0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               93
                                                             clus
vv                                                            18Q GAIN WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                        8
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                       6
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                      1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                294
D33V10, binary
                    cls
clus                   0   1
  18Q GAIN MUTATED     5  92
  18Q GAIN WILD-TYPE   7 302
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18Q GAIN MUTATED      5   92
  18Q GAIN WILD-TYPE    7  302
     clus
vv    18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  NO                 5                  7
  YES               92                302
D33V11, continuous
D33V12, continuous
                    vv
clus                  R0  R1  R2  RX
  18Q GAIN MUTATED    80   2   2   3
  18Q GAIN WILD-TYPE 250   6   2  15
D33V13, multiclass
    clus
vv   18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  R0               80                250
  R1                2                  6
  R2                2                  2
  RX                3                 15

Clustering(34) Variable = 19P GAIN MUTATION ANALYSIS
D34V1, survival
                    sevent
clus2                  0   1
  19P GAIN MUTATED    50  35
  19P GAIN WILD-TYPE 189 103
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                85                292 
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                35                103 
$`19P GAIN MUTATED`
TCGA-18-3407 TCGA-18-3410 TCGA-18-3411 TCGA-18-3421 TCGA-21-5787 TCGA-22-1011 
        4.47         4.80        46.52        43.76        10.82         1.74 
TCGA-22-1012 TCGA-22-4593 TCGA-22-4595 TCGA-22-4604 TCGA-22-5471 TCGA-22-5474 
       14.10        35.08        24.13        13.12        31.73        14.60 
TCGA-22-5477 TCGA-22-5481 TCGA-22-5483 TCGA-22-5489 TCGA-33-4533 TCGA-33-4538 
       44.22        79.20        18.84        62.86       114.05        97.94 
TCGA-33-4566 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2605 
      173.79        14.07        19.76         2.63        61.61        28.96 
TCGA-34-5231 TCGA-34-5239 TCGA-34-5240 TCGA-34-7107 TCGA-39-5016 TCGA-39-5019 
       50.24        23.24        12.00         1.08        74.07        44.71 
TCGA-39-5031 TCGA-39-5034 TCGA-39-5035 TCGA-39-5040 TCGA-43-6143 TCGA-43-7657 
       27.35        36.39        15.58        17.06        12.36         1.58 
TCGA-43-A475 TCGA-46-3768 TCGA-52-7809 TCGA-56-6546 TCGA-56-7580 TCGA-56-7582 
        9.73         9.96         5.42         1.02         1.32         0.85 
TCGA-58-8393 TCGA-58-A46M TCGA-58-A46N TCGA-60-2695 TCGA-60-2704 TCGA-60-2708 
       34.78        23.24        17.72        21.07        37.94        80.42 
TCGA-60-2712 TCGA-60-2719 TCGA-66-2770 TCGA-66-2777 TCGA-66-2787 TCGA-66-2794 
        9.01        42.61        23.01         2.01        40.01        54.08 
TCGA-66-2800 TCGA-68-8251 TCGA-77-6843 TCGA-77-7139 TCGA-77-7141 TCGA-77-7142 
       49.05         3.12        73.08        89.95         0.49        42.25 
TCGA-77-7465 TCGA-77-8008 TCGA-77-8009 TCGA-77-8148 TCGA-77-8150 TCGA-77-A5G3 
       15.75        86.76        53.95         9.63        54.41       117.57 
TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 TCGA-85-7843 TCGA-85-7950 TCGA-85-8277 
        0.79         1.12         0.59         1.15         1.97         0.36 
TCGA-85-8353 TCGA-85-8354 TCGA-85-8479 TCGA-85-A4QR TCGA-90-7769 TCGA-90-A4EE 
        1.78         2.01         0.72         0.82        11.77        10.88 
TCGA-92-7340 TCGA-92-8064 TCGA-96-7545 TCGA-96-A4JK TCGA-98-8020 TCGA-J1-A4AH 
        2.70         5.26        44.15         8.98         2.73         7.30 
TCGA-LA-A446 
        1.18 

$`19P GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3408 TCGA-18-3409 TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 
       12.16        81.07        79.46        11.34        13.02        59.51 
TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 
       28.34        24.92         1.61         6.15         2.79        90.51 
TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 
        3.02        27.16       119.54        46.88        99.16        70.13 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1079 TCGA-21-1080 TCGA-21-1081 
       60.89        34.78        15.55        31.69       122.43         9.30 
TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 TCGA-21-5786 
      119.80         8.78        31.63        88.08        41.69        33.93 
TCGA-21-A5DI TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 
       32.19        19.99         7.33        14.93         4.31        64.21 
TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 TCGA-22-4594 TCGA-22-4596 TCGA-22-4599 
       27.02        48.82        20.45        48.33         0.56        38.17 
TCGA-22-4601 TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 TCGA-22-5472 
       34.75        32.02        19.30         9.53        11.77        64.90 
TCGA-22-5473 TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 
       63.52         0.79        54.28        71.34        11.74        30.08 
TCGA-22-5491 TCGA-22-5492 TCGA-22-A5C4 TCGA-33-4532 TCGA-33-4547 TCGA-33-4582 
       56.32        16.60         0.95         7.63        43.10       103.53 
TCGA-33-4583 TCGA-33-4587 TCGA-33-4589 TCGA-33-6738 TCGA-34-2604 TCGA-34-2608 
      141.34        54.44        10.98        26.99        31.50        32.84 
TCGA-34-2609 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5241 TCGA-34-5927 
       31.23        67.79        56.38         9.04        14.07        30.94 
TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 
       18.12         4.96         3.95         0.43         0.39         6.54 
TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 
        8.09         7.46         7.82         6.81         0.39         3.39 
TCGA-39-5011 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       47.80        68.58        55.17        70.03        60.76         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2576 
       24.33         1.94        35.64        35.70        17.88        40.21 
TCGA-43-2578 TCGA-43-2581 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-5670 
       22.49        38.66        27.02        33.07        11.47        18.05 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7658 
       24.89        10.19         5.42         3.78         6.97        66.51 
TCGA-43-8115 TCGA-43-8116 TCGA-43-8118 TCGA-43-A474 TCGA-43-A56V TCGA-46-6025 
        6.64         6.35         2.93        11.61         5.06        10.65 
TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 TCGA-52-7810 
       13.87         0.39         0.39        29.95        17.79        30.31 
TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 TCGA-56-5898 TCGA-56-6545 
        8.75        27.45        28.93         0.10        18.25         2.04 
TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 TCGA-56-7730 TCGA-56-7822 
        0.99         0.43         0.99         1.45         0.20         0.03 
TCGA-56-8503 TCGA-56-8504 TCGA-56-8622 TCGA-56-8624 TCGA-56-8625 TCGA-56-8626 
        1.35         5.82         1.78         1.18         2.07         0.56 
TCGA-56-8628 TCGA-56-8629 TCGA-56-A49D TCGA-56-A4BX TCGA-56-A4BY TCGA-56-A4ZJ 
        0.53         1.12         0.99         1.51         0.99         1.02 
TCGA-56-A4ZK TCGA-56-A5DS TCGA-58-8386 TCGA-58-8387 TCGA-58-8388 TCGA-58-8390 
        0.13         0.26         0.03        13.25        12.43        29.95 
TCGA-58-8391 TCGA-58-8392 TCGA-58-A46J TCGA-58-A46K TCGA-58-A46L TCGA-60-2696 
       71.24        16.47        64.87        34.36        36.59         3.58 
TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 TCGA-60-2706 TCGA-60-2707 TCGA-60-2709 
       12.23        10.22        96.82        92.71        21.70        49.48 
TCGA-60-2710 TCGA-60-2711 TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 
       66.51        41.39        56.91        50.33        35.34        48.49 
TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 
        3.16        32.28        29.85        35.90        23.57        26.79 
TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 
       11.77        16.96        43.10         2.01        21.07         0.99 
TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 
        1.02         2.01         0.92         0.99         0.99        20.98 
TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 
       25.02         0.99         2.01         1.02         2.01         2.01 
TCGA-66-2769 TCGA-66-2771 TCGA-66-2773 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 
        7.07        19.00         3.02        19.00        12.03         3.98 
TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2788 TCGA-66-2789 
       12.00        24.95         1.94        25.97        22.98         4.04 
TCGA-66-2790 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2795 TCGA-68-7755 
       22.98         5.03        30.02        10.06         4.01         2.73 
TCGA-68-7756 TCGA-68-7757 TCGA-68-8250 TCGA-77-6842 TCGA-77-6844 TCGA-77-6845 
        6.64         6.94         8.02        29.56        75.09        23.28 
TCGA-77-7138 TCGA-77-7140 TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 
       11.18        20.78        70.09       106.95         0.16        46.78 
TCGA-77-8007 TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 
        6.51        37.81        82.92        12.59        53.92        39.09 
TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 TCGA-77-8143 TCGA-77-8144 TCGA-77-8145 
       17.69       104.09        11.54        26.40        27.39         6.97 
TCGA-77-8153 TCGA-77-8154 TCGA-77-8156 TCGA-77-A5FZ TCGA-77-A5GB TCGA-77-A5GH 
       55.33        35.90         0.33       126.18        30.81        23.44 
TCGA-85-6560 TCGA-85-7697 TCGA-85-7698 TCGA-85-7699 TCGA-85-7844 TCGA-85-8048 
        0.36         0.33         1.61         0.03         1.25         0.85 
TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 TCGA-85-8276 
        1.97         0.53        16.77        14.07         1.18         0.43 
TCGA-85-8287 TCGA-85-8288 TCGA-85-8350 TCGA-85-8351 TCGA-85-8352 TCGA-85-8355 
        1.45         1.78         1.97         1.81         2.20         0.66 
TCGA-85-8481 TCGA-85-8580 TCGA-85-8582 TCGA-85-8664 TCGA-85-8666 TCGA-85-A4CL 
        0.66        14.60        13.91         0.10        15.58         0.46 
TCGA-85-A50M TCGA-85-A513 TCGA-85-A53L TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 
        0.62         0.79         0.43        24.89         9.50         2.93 
TCGA-90-7964 TCGA-90-A4ED TCGA-92-7341 TCGA-92-8063 TCGA-92-8065 TCGA-94-7033 
       14.07         8.02         3.48         4.01         2.27         2.86 
TCGA-94-7557 TCGA-94-7943 TCGA-96-7544 TCGA-96-8169 TCGA-96-8170 TCGA-96-A4JL 
        0.16        11.70        39.88         6.18         6.90         6.02 
TCGA-98-7454 TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 TCGA-L3-A4E7 TCGA-L3-A524 
        8.42        13.58         7.33        10.13         1.15        14.76 
TCGA-MF-A522 TCGA-NC-A5HE TCGA-NC-A5HG TCGA-NC-A5HI 
        3.02        56.61        50.86        37.32 

  19P GAIN MUTATED 19P GAIN WILD-TYPE 
              0.36               0.03 
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
            173.79             141.34 
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
             15.58              12.51 
[1] "0.4 - 173.8 (15.6)" "0.0 - 141.3 (12.5)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
  "19P GAIN MUTATED"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-22-A5C4         TCGA-33-4532         TCGA-33-4533 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-33-4538         TCGA-33-4547         TCGA-33-4566 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-33-4582         TCGA-33-4583         TCGA-33-4586 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-33-4587         TCGA-33-4589         TCGA-33-6737 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-33-6738         TCGA-34-2596         TCGA-34-2600 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-34-2604         TCGA-34-2605         TCGA-34-2608 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-34-2609         TCGA-34-5231         TCGA-34-5232 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-34-5234         TCGA-34-5236         TCGA-34-5239 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-34-5240         TCGA-34-5241         TCGA-34-5927 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-34-5928         TCGA-34-5929         TCGA-34-7107 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-3792 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4132 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-37-4133         TCGA-37-4135         TCGA-37-4141 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-37-5819         TCGA-39-5011         TCGA-39-5016 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-39-5019         TCGA-39-5021         TCGA-39-5022 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-39-5024         TCGA-39-5027         TCGA-39-5028 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-39-5029         TCGA-39-5030         TCGA-39-5031 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-39-5034         TCGA-39-5035         TCGA-39-5036 
  "19P GAIN MUTATED"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-39-5037         TCGA-39-5039         TCGA-39-5040 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-43-8118 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-43-A474         TCGA-43-A475         TCGA-43-A56V 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-46-3768         TCGA-46-6025         TCGA-46-6026 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-51-4079         TCGA-51-4080         TCGA-51-4081 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-52-7622         TCGA-52-7809         TCGA-52-7810 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-52-7811         TCGA-52-7812         TCGA-56-1622 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-56-5897         TCGA-56-5898         TCGA-56-6545 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-56-6546         TCGA-56-7221         TCGA-56-7222 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-56-7223         TCGA-56-7579         TCGA-56-7580 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-56-7582         TCGA-56-7730         TCGA-56-7822 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-56-8503         TCGA-56-8504         TCGA-56-8622 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-56-8624         TCGA-56-8625         TCGA-56-8626 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-56-8628         TCGA-56-8629         TCGA-56-A49D 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-56-A4BX         TCGA-56-A4BY         TCGA-56-A4ZJ 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-56-A4ZK         TCGA-56-A5DS         TCGA-58-8386 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-58-8387         TCGA-58-8388         TCGA-58-8390 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-58-8391         TCGA-58-8392         TCGA-58-8393 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-58-A46J         TCGA-58-A46K         TCGA-58-A46L 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-58-A46M         TCGA-58-A46N         TCGA-60-2695 
  "19P GAIN MUTATED"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-60-2696         TCGA-60-2697         TCGA-60-2698 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-60-2703         TCGA-60-2704         TCGA-60-2706 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2756 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2770         TCGA-66-2771         TCGA-66-2773 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2785         TCGA-66-2786         TCGA-66-2787 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-68-7755         TCGA-68-7756         TCGA-68-7757 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-68-8250         TCGA-68-8251         TCGA-77-6842 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-77-6843         TCGA-77-6844         TCGA-77-6845 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-77-7138         TCGA-77-7139         TCGA-77-7140 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-77-7141         TCGA-77-7142         TCGA-77-7335 
  "19P GAIN MUTATED"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-77-7337         TCGA-77-7338         TCGA-77-7463 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-77-7465         TCGA-77-8007         TCGA-77-8008 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-77-8009         TCGA-77-8128         TCGA-77-8130 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-77-8131         TCGA-77-8133         TCGA-77-8136 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-77-8138         TCGA-77-8139         TCGA-77-8140 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-77-8143         TCGA-77-8144         TCGA-77-8145 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-77-8148         TCGA-77-8150         TCGA-77-8153 
  "19P GAIN MUTATED"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-77-8154         TCGA-77-8156         TCGA-77-A5FZ 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-77-A5G3         TCGA-77-A5GB         TCGA-77-A5GH 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-96-8169         TCGA-96-8170         TCGA-96-A4JK 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-96-A4JL         TCGA-98-7454         TCGA-98-8020 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-LA-A446         TCGA-MF-A522         TCGA-NC-A5HE 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
  "19P GAIN MUTATED"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-22-A5C4         TCGA-33-4532         TCGA-33-4533 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-33-4538         TCGA-33-4547         TCGA-33-4566 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-33-4582         TCGA-33-4583         TCGA-33-4586 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-33-4587         TCGA-33-4589         TCGA-33-6737 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-33-6738         TCGA-34-2596         TCGA-34-2600 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-34-2604         TCGA-34-2605         TCGA-34-2608 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-34-2609         TCGA-34-5231         TCGA-34-5232 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-34-5234         TCGA-34-5236         TCGA-34-5239 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-34-5240         TCGA-34-5241         TCGA-34-5927 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-34-5928         TCGA-34-5929         TCGA-34-7107 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-3792 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4132 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-37-4133         TCGA-37-4135         TCGA-37-4141 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-37-5819         TCGA-39-5011         TCGA-39-5016 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-39-5019         TCGA-39-5021         TCGA-39-5022 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-39-5024         TCGA-39-5027         TCGA-39-5028 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-39-5029         TCGA-39-5030         TCGA-39-5031 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-39-5034         TCGA-39-5035         TCGA-39-5036 
  "19P GAIN MUTATED"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-39-5037         TCGA-39-5039         TCGA-39-5040 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-43-8118 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-43-A474         TCGA-43-A475         TCGA-43-A56V 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-46-3768         TCGA-46-6025         TCGA-46-6026 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-51-4079         TCGA-51-4080         TCGA-51-4081 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-52-7622         TCGA-52-7809         TCGA-52-7810 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-52-7811         TCGA-52-7812         TCGA-56-1622 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-56-5897         TCGA-56-5898         TCGA-56-6545 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-56-6546         TCGA-56-7221         TCGA-56-7222 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-56-7223         TCGA-56-7579         TCGA-56-7580 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-56-7582         TCGA-56-7730         TCGA-56-7822 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-56-8503         TCGA-56-8504         TCGA-56-8622 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-56-8624         TCGA-56-8625         TCGA-56-8626 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-56-8628         TCGA-56-8629         TCGA-56-A49D 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-56-A4BX         TCGA-56-A4BY         TCGA-56-A4ZJ 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-56-A4ZK         TCGA-56-A5DS         TCGA-58-8386 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-58-8387         TCGA-58-8388         TCGA-58-8390 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-58-8391         TCGA-58-8392         TCGA-58-8393 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-58-A46J         TCGA-58-A46K         TCGA-58-A46L 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-58-A46M         TCGA-58-A46N         TCGA-60-2695 
  "19P GAIN MUTATED"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-60-2696         TCGA-60-2697         TCGA-60-2698 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-60-2703         TCGA-60-2704         TCGA-60-2706 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2756 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2770         TCGA-66-2771         TCGA-66-2773 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2785         TCGA-66-2786         TCGA-66-2787 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-68-7755         TCGA-68-7756         TCGA-68-7757 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-68-8250         TCGA-68-8251         TCGA-77-6842 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-77-6843         TCGA-77-6844         TCGA-77-6845 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-77-7138         TCGA-77-7139         TCGA-77-7140 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-77-7141         TCGA-77-7142         TCGA-77-7335 
  "19P GAIN MUTATED"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-77-7337         TCGA-77-7338         TCGA-77-7463 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-77-7465         TCGA-77-8007         TCGA-77-8008 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-77-8009         TCGA-77-8128         TCGA-77-8130 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-77-8131         TCGA-77-8133         TCGA-77-8136 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-77-8138         TCGA-77-8139         TCGA-77-8140 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-77-8143         TCGA-77-8144         TCGA-77-8145 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-77-8148         TCGA-77-8150         TCGA-77-8153 
  "19P GAIN MUTATED"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-77-8154         TCGA-77-8156         TCGA-77-A5FZ 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-77-A5G3         TCGA-77-A5GB         TCGA-77-A5GH 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-96-8169         TCGA-96-8170         TCGA-96-A4JK 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-96-A4JL         TCGA-98-7454         TCGA-98-8020 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-LA-A446         TCGA-MF-A522         TCGA-NC-A5HE 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
  "19P GAIN MUTATED"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-22-A5C4         TCGA-33-4532         TCGA-33-4533 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-33-4538         TCGA-33-4547         TCGA-33-4566 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-33-4582         TCGA-33-4583         TCGA-33-4586 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-33-4587         TCGA-33-4589         TCGA-33-6737 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-33-6738         TCGA-34-2596         TCGA-34-2600 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-34-2604         TCGA-34-2605         TCGA-34-2608 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-34-2609         TCGA-34-5231         TCGA-34-5232 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-34-5234         TCGA-34-5236         TCGA-34-5239 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-34-5240         TCGA-34-5241         TCGA-34-5927 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-34-5928         TCGA-34-5929         TCGA-34-7107 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-3792 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4132 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-37-4133         TCGA-37-4135         TCGA-37-4141 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-37-5819         TCGA-39-5011         TCGA-39-5016 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-39-5019         TCGA-39-5021         TCGA-39-5022 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-39-5024         TCGA-39-5027         TCGA-39-5028 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-39-5029         TCGA-39-5030         TCGA-39-5031 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-39-5034         TCGA-39-5035         TCGA-39-5036 
  "19P GAIN MUTATED"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-39-5037         TCGA-39-5039         TCGA-39-5040 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-43-8118 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-43-A474         TCGA-43-A475         TCGA-43-A56V 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-46-3768         TCGA-46-6025         TCGA-46-6026 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-51-4079         TCGA-51-4080         TCGA-51-4081 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-52-7622         TCGA-52-7809         TCGA-52-7810 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-52-7811         TCGA-52-7812         TCGA-56-1622 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-56-5897         TCGA-56-5898         TCGA-56-6545 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-56-6546         TCGA-56-7221         TCGA-56-7222 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-56-7223         TCGA-56-7579         TCGA-56-7580 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-56-7582         TCGA-56-7730         TCGA-56-7822 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-56-8503         TCGA-56-8504         TCGA-56-8622 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-56-8624         TCGA-56-8625         TCGA-56-8626 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-56-8628         TCGA-56-8629         TCGA-56-A49D 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-56-A4BX         TCGA-56-A4BY         TCGA-56-A4ZJ 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-56-A4ZK         TCGA-56-A5DS         TCGA-58-8386 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-58-8387         TCGA-58-8388         TCGA-58-8390 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-58-8391         TCGA-58-8392         TCGA-58-8393 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-58-A46J         TCGA-58-A46K         TCGA-58-A46L 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-58-A46M         TCGA-58-A46N         TCGA-60-2695 
  "19P GAIN MUTATED"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-60-2696         TCGA-60-2697         TCGA-60-2698 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-60-2703         TCGA-60-2704         TCGA-60-2706 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2756 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2770         TCGA-66-2771         TCGA-66-2773 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2785         TCGA-66-2786         TCGA-66-2787 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-68-7755         TCGA-68-7756         TCGA-68-7757 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-68-8250         TCGA-68-8251         TCGA-77-6842 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-77-6843         TCGA-77-6844         TCGA-77-6845 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-77-7138         TCGA-77-7139         TCGA-77-7140 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-77-7141         TCGA-77-7142         TCGA-77-7335 
  "19P GAIN MUTATED"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-77-7337         TCGA-77-7338         TCGA-77-7463 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-77-7465         TCGA-77-8007         TCGA-77-8008 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-77-8009         TCGA-77-8128         TCGA-77-8130 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-77-8131         TCGA-77-8133         TCGA-77-8136 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-77-8138         TCGA-77-8139         TCGA-77-8140 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-77-8143         TCGA-77-8144         TCGA-77-8145 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-77-8148         TCGA-77-8150         TCGA-77-8153 
  "19P GAIN MUTATED"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-77-8154         TCGA-77-8156         TCGA-77-A5FZ 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-77-A5G3         TCGA-77-A5GB         TCGA-77-A5GH 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-96-8169         TCGA-96-8170         TCGA-96-A4JK 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-96-A4JL         TCGA-98-7454         TCGA-98-8020 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-LA-A446         TCGA-MF-A522         TCGA-NC-A5HE 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
[1] "hr=" "1"  
D34V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  19P GAIN MUTATED         0       12       29        1        13        15
  19P GAIN WILD-TYPE       1       56      104        0        37        56
                    vv
clus                 STAGE IIIA STAGE IIIB STAGE IV
  19P GAIN MUTATED           15          5        0
  19P GAIN WILD-TYPE         39         15        5
D34V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  19P GAIN MUTATED    16  58  12   4
  19P GAIN WILD-TYPE  77 192  32  15
D34V4, multiclass
    clus
vv   19P GAIN MUTATED 19P GAIN WILD-TYPE
  T1               16                 77
  T2               58                192
  T3               12                 32
  T4                4                 15
                    vv
clus                  N0  N1  N2  N3
  19P GAIN MUTATED    52  29   9   0
  19P GAIN WILD-TYPE 201  80  25   5
D34V5, multiclass
    clus
vv   19P GAIN MUTATED 19P GAIN WILD-TYPE
  N0               52                201
  N1               29                 80
  N2                9                 25
  N3                0                  5
                    vv
clus                  M0  M1  MX
  19P GAIN MUTATED    80   0   9
  19P GAIN WILD-TYPE 268   5  38
D34V6, multiclass
    clus
vv   19P GAIN MUTATED 19P GAIN WILD-TYPE
  M0               80                268
  M1                0                  5
  MX                9                 38
D34V7, binary
                    cls
clus                   0   1
  19P GAIN MUTATED    22  68
  19P GAIN WILD-TYPE  79 237
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19P GAIN MUTATED     22   68
  19P GAIN WILD-TYPE   79  237
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  FEMALE               22                 79
  MALE                 68                237
D34V8, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  19P GAIN MUTATED                                       6
  19P GAIN WILD-TYPE                                     6
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  19P GAIN MUTATED                                        1
  19P GAIN WILD-TYPE                                      5
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  19P GAIN MUTATED                                         0
  19P GAIN WILD-TYPE                                       1
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  19P GAIN MUTATED                                                            83
  19P GAIN WILD-TYPE                                                         304
D34V9, multiclass
                                                             clus
vv                                                            19P GAIN MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      6
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                     1
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                    0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               83
                                                             clus
vv                                                            19P GAIN WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                        6
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                       5
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                      1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                304
D34V10, binary
                    cls
clus                   0   1
  19P GAIN MUTATED     5  85
  19P GAIN WILD-TYPE   7 309
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19P GAIN MUTATED      5   85
  19P GAIN WILD-TYPE    7  309
     clus
vv    19P GAIN MUTATED 19P GAIN WILD-TYPE
  NO                 5                  7
  YES               85                309
D34V11, continuous
D34V12, continuous
                    vv
clus                  R0  R1  R2  RX
  19P GAIN MUTATED    71   2   1   5
  19P GAIN WILD-TYPE 259   6   3  13
D34V13, multiclass
    clus
vv   19P GAIN MUTATED 19P GAIN WILD-TYPE
  R0               71                259
  R1                2                  6
  R2                1                  3
  RX                5                 13

Clustering(35) Variable = 19Q GAIN MUTATION ANALYSIS
D35V1, survival
                    sevent
clus2                  0   1
  19Q GAIN MUTATED    69  51
  19Q GAIN WILD-TYPE 170  87
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
               120                257 
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
                51                 87 
$`19Q GAIN MUTATED`
TCGA-18-3407 TCGA-18-3410 TCGA-18-3411 TCGA-18-3417 TCGA-18-3421 TCGA-21-1070 
        4.47         4.80        46.52        24.92        43.76       119.54 
TCGA-21-1071 TCGA-21-1081 TCGA-21-5786 TCGA-21-5787 TCGA-22-1011 TCGA-22-1012 
       46.88         9.30        33.93        10.82         1.74        14.10 
TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-5477 
       35.08        24.13        38.17        34.75        13.12        44.22 
TCGA-22-5481 TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 TCGA-33-4533 TCGA-33-4538 
       79.20        18.84        30.08        62.86       114.05        97.94 
TCGA-33-4566 TCGA-33-4582 TCGA-33-6737 TCGA-33-6738 TCGA-34-2596 TCGA-34-2600 
      173.79       103.53        19.76        26.99         2.63        61.61 
TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 TCGA-34-5239 
       31.50        28.96        32.84        31.23        50.24        23.24 
TCGA-34-5240 TCGA-34-5928 TCGA-34-7107 TCGA-37-3792 TCGA-37-5819 TCGA-39-5016 
       12.00        18.12         1.08         0.39         3.39        74.07 
TCGA-39-5019 TCGA-39-5029 TCGA-39-5031 TCGA-39-5034 TCGA-39-5035 TCGA-39-5039 
       44.71        24.33        27.35        36.39        15.58        17.88 
TCGA-39-5040 TCGA-43-3920 TCGA-43-5668 TCGA-43-5670 TCGA-43-6143 TCGA-43-7657 
       17.06        33.07        11.47        18.05        12.36         1.58 
TCGA-43-A475 TCGA-43-A56V TCGA-46-3768 TCGA-52-7809 TCGA-56-6545 TCGA-56-6546 
        9.73         5.06         9.96         5.42         2.04         1.02 
TCGA-56-7580 TCGA-56-7582 TCGA-56-8629 TCGA-56-A49D TCGA-56-A4BY TCGA-58-8393 
        1.32         0.85         1.12         0.99         0.99        34.78 
TCGA-58-A46K TCGA-58-A46M TCGA-58-A46N TCGA-60-2695 TCGA-60-2704 TCGA-60-2708 
       34.36        23.24        17.72        21.07        37.94        80.42 
TCGA-60-2712 TCGA-60-2719 TCGA-60-2722 TCGA-60-2723 TCGA-66-2742 TCGA-66-2758 
        9.01        42.61        29.85        35.90        21.07        20.98 
TCGA-66-2763 TCGA-66-2770 TCGA-66-2777 TCGA-66-2787 TCGA-66-2788 TCGA-66-2793 
        0.99        23.01         2.01        40.01        22.98        10.06 
TCGA-66-2800 TCGA-68-8251 TCGA-77-6842 TCGA-77-6843 TCGA-77-7138 TCGA-77-7141 
       49.05         3.12        29.56        73.08        11.18         0.49 
TCGA-77-7142 TCGA-77-7335 TCGA-77-7465 TCGA-77-8008 TCGA-77-8009 TCGA-77-8130 
       42.25        70.09        15.75        86.76        53.95        82.92 
TCGA-77-8138 TCGA-77-8145 TCGA-77-8148 TCGA-77-8150 TCGA-77-A5G3 TCGA-85-7696 
       17.69         6.97         9.63        54.41       117.57         0.59 
TCGA-85-7699 TCGA-85-8350 TCGA-85-8353 TCGA-85-8354 TCGA-85-A4QR TCGA-85-A50M 
        0.03         1.97         1.78         2.01         0.82         0.62 
TCGA-85-A53L TCGA-90-7769 TCGA-90-A4EE TCGA-92-7340 TCGA-92-7341 TCGA-92-8064 
        0.43        11.77        10.88         2.70         3.48         5.26 
TCGA-96-7545 TCGA-96-A4JK TCGA-98-8020 TCGA-98-8022 TCGA-J1-A4AH TCGA-LA-A446 
       44.15         8.98         2.73         7.33         7.30         1.18 

$`19Q GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3408 TCGA-18-3409 TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 
       12.16        81.07        79.46        11.34        13.02        59.51 
TCGA-18-3416 TCGA-18-3419 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 
       28.34         1.61         6.15         2.79        90.51         3.02 
TCGA-18-5595 TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 
       27.16        99.16        70.13        60.89        34.78        15.55 
TCGA-21-1079 TCGA-21-1080 TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 
       31.69       122.43       119.80         8.78        31.63        88.08 
TCGA-21-5784 TCGA-21-A5DI TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 
       41.69        32.19        19.99         7.33        14.93         4.31 
TCGA-22-1005 TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 TCGA-22-4594 TCGA-22-4596 
       64.21        27.02        48.82        20.45        48.33         0.56 
TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 
       32.02        19.30         9.53        11.77        31.73        64.90 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 TCGA-22-5482 
       63.52        14.60         0.79        54.28        71.34        11.74 
TCGA-22-5491 TCGA-22-5492 TCGA-22-A5C4 TCGA-33-4532 TCGA-33-4547 TCGA-33-4583 
       56.32        16.60         0.95         7.63        43.10       141.34 
TCGA-33-4586 TCGA-33-4587 TCGA-33-4589 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 
       14.07        54.44        10.98        67.79        56.38         9.04 
TCGA-34-5241 TCGA-34-5927 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4129 
       14.07        30.94         4.96         3.95         0.43         6.54 
TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-39-5011 
        8.09         7.46         7.82         6.81         0.39        47.80 
TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5030 
       68.58        55.17        70.03        60.76         1.71         1.94 
TCGA-39-5036 TCGA-39-5037 TCGA-43-2576 TCGA-43-2578 TCGA-43-2581 TCGA-43-3394 
       35.64        35.70        40.21        22.49        38.66        27.02 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7658 
       24.89        10.19         5.42         3.78         6.97        66.51 
TCGA-43-8115 TCGA-43-8116 TCGA-43-8118 TCGA-43-A474 TCGA-46-6025 TCGA-46-6026 
        6.64         6.35         2.93        11.61        10.65        13.87 
TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 TCGA-52-7810 TCGA-52-7811 
        0.39         0.39        29.95        17.79        30.31         8.75 
TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 TCGA-56-5898 TCGA-56-7221 TCGA-56-7222 
       27.45        28.93         0.10        18.25         0.99         0.43 
TCGA-56-7223 TCGA-56-7579 TCGA-56-7730 TCGA-56-7822 TCGA-56-8503 TCGA-56-8504 
        0.99         1.45         0.20         0.03         1.35         5.82 
TCGA-56-8622 TCGA-56-8624 TCGA-56-8625 TCGA-56-8626 TCGA-56-8628 TCGA-56-A4BX 
        1.78         1.18         2.07         0.56         0.53         1.51 
TCGA-56-A4ZJ TCGA-56-A4ZK TCGA-56-A5DS TCGA-58-8386 TCGA-58-8387 TCGA-58-8388 
        1.02         0.13         0.26         0.03        13.25        12.43 
TCGA-58-8390 TCGA-58-8391 TCGA-58-8392 TCGA-58-A46J TCGA-58-A46L TCGA-60-2696 
       29.95        71.24        16.47        64.87        36.59         3.58 
TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 TCGA-60-2706 TCGA-60-2707 TCGA-60-2709 
       12.23        10.22        96.82        92.71        21.70        49.48 
TCGA-60-2710 TCGA-60-2711 TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 
       66.51        41.39        56.91        50.33        35.34        48.49 
TCGA-60-2720 TCGA-60-2721 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 
        3.16        32.28        23.57        26.79        11.77        16.96 
TCGA-66-2734 TCGA-66-2737 TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 
       43.10         2.01         0.99         1.02         2.01         0.92 
TCGA-66-2756 TCGA-66-2757 TCGA-66-2759 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 
        0.99         0.99        25.02         2.01         1.02         2.01 
TCGA-66-2768 TCGA-66-2769 TCGA-66-2771 TCGA-66-2773 TCGA-66-2778 TCGA-66-2780 
        2.01         7.07        19.00         3.02        19.00        12.03 
TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2789 
        3.98        12.00        24.95         1.94        25.97         4.04 
TCGA-66-2790 TCGA-66-2791 TCGA-66-2792 TCGA-66-2794 TCGA-66-2795 TCGA-68-7755 
       22.98         5.03        30.02        54.08         4.01         2.73 
TCGA-68-7756 TCGA-68-7757 TCGA-68-8250 TCGA-77-6844 TCGA-77-6845 TCGA-77-7139 
        6.64         6.94         8.02        75.09        23.28        89.95 
TCGA-77-7140 TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 TCGA-77-8007 TCGA-77-8128 
       20.78       106.95         0.16        46.78         6.51        37.81 
TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 TCGA-77-8139 TCGA-77-8140 TCGA-77-8143 
       12.59        53.92        39.09       104.09        11.54        26.40 
TCGA-77-8144 TCGA-77-8153 TCGA-77-8154 TCGA-77-8156 TCGA-77-A5FZ TCGA-77-A5GB 
       27.39        55.33        35.90         0.33       126.18        30.81 
TCGA-77-A5GH TCGA-85-6560 TCGA-85-6561 TCGA-85-6798 TCGA-85-7697 TCGA-85-7698 
       23.44         0.36         0.79         1.12         0.33         1.61 
TCGA-85-7843 TCGA-85-7844 TCGA-85-7950 TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 
        1.15         1.25         1.97         0.85         1.97         0.53 
TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 TCGA-85-8276 TCGA-85-8277 TCGA-85-8287 
       16.77        14.07         1.18         0.43         0.36         1.45 
TCGA-85-8288 TCGA-85-8351 TCGA-85-8352 TCGA-85-8355 TCGA-85-8479 TCGA-85-8481 
        1.78         1.81         2.20         0.66         0.72         0.66 
TCGA-85-8580 TCGA-85-8582 TCGA-85-8664 TCGA-85-8666 TCGA-85-A4CL TCGA-85-A513 
       14.60        13.91         0.10        15.58         0.46         0.79 
TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 TCGA-90-7964 TCGA-90-A4ED TCGA-92-8063 
       24.89         9.50         2.93        14.07         8.02         4.01 
TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 TCGA-94-7943 TCGA-96-7544 TCGA-96-8169 
        2.27         2.86         0.16        11.70        39.88         6.18 
TCGA-96-8170 TCGA-96-A4JL TCGA-98-7454 TCGA-98-8021 TCGA-98-8023 TCGA-L3-A4E7 
        6.90         6.02         8.42        13.58        10.13         1.15 
TCGA-L3-A524 TCGA-MF-A522 TCGA-NC-A5HE TCGA-NC-A5HG TCGA-NC-A5HI 
       14.76         3.02        56.61        50.86        37.32 

  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
              0.03               0.03 
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
            173.79             141.34 
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
            18.085             12.000 
[1] "0.0 - 173.8 (18.1)" "0.0 - 141.3 (12.0)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-22-A5C4         TCGA-33-4532         TCGA-33-4533 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-33-4538         TCGA-33-4547         TCGA-33-4566 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-33-4582         TCGA-33-4583         TCGA-33-4586 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-33-4587         TCGA-33-4589         TCGA-33-6737 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-33-6738         TCGA-34-2596         TCGA-34-2600 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-34-2604         TCGA-34-2605         TCGA-34-2608 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-34-2609         TCGA-34-5231         TCGA-34-5232 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-34-5234         TCGA-34-5236         TCGA-34-5239 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-34-5240         TCGA-34-5241         TCGA-34-5927 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-34-5928         TCGA-34-5929         TCGA-34-7107 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-3792 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4132 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-37-4133         TCGA-37-4135         TCGA-37-4141 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-37-5819         TCGA-39-5011         TCGA-39-5016 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-39-5019         TCGA-39-5021         TCGA-39-5022 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-39-5024         TCGA-39-5027         TCGA-39-5028 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-39-5029         TCGA-39-5030         TCGA-39-5031 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-39-5034         TCGA-39-5035         TCGA-39-5036 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-39-5037         TCGA-39-5039         TCGA-39-5040 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-43-8118 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-43-A474         TCGA-43-A475         TCGA-43-A56V 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-46-3768         TCGA-46-6025         TCGA-46-6026 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-51-4079         TCGA-51-4080         TCGA-51-4081 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-52-7622         TCGA-52-7809         TCGA-52-7810 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-52-7811         TCGA-52-7812         TCGA-56-1622 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-56-5897         TCGA-56-5898         TCGA-56-6545 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-56-6546         TCGA-56-7221         TCGA-56-7222 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-56-7223         TCGA-56-7579         TCGA-56-7580 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-56-7582         TCGA-56-7730         TCGA-56-7822 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-56-8503         TCGA-56-8504         TCGA-56-8622 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-56-8624         TCGA-56-8625         TCGA-56-8626 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-56-8628         TCGA-56-8629         TCGA-56-A49D 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-56-A4BX         TCGA-56-A4BY         TCGA-56-A4ZJ 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-56-A4ZK         TCGA-56-A5DS         TCGA-58-8386 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-58-8387         TCGA-58-8388         TCGA-58-8390 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-58-8391         TCGA-58-8392         TCGA-58-8393 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-58-A46J         TCGA-58-A46K         TCGA-58-A46L 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-58-A46M         TCGA-58-A46N         TCGA-60-2695 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-60-2696         TCGA-60-2697         TCGA-60-2698 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-60-2703         TCGA-60-2704         TCGA-60-2706 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2756 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-66-2770         TCGA-66-2771         TCGA-66-2773 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-66-2785         TCGA-66-2786         TCGA-66-2787 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-68-7755         TCGA-68-7756         TCGA-68-7757 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-68-8250         TCGA-68-8251         TCGA-77-6842 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-77-6843         TCGA-77-6844         TCGA-77-6845 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-77-7138         TCGA-77-7139         TCGA-77-7140 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-77-7141         TCGA-77-7142         TCGA-77-7335 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-77-7337         TCGA-77-7338         TCGA-77-7463 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-77-7465         TCGA-77-8007         TCGA-77-8008 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-77-8009         TCGA-77-8128         TCGA-77-8130 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-77-8131         TCGA-77-8133         TCGA-77-8136 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-77-8138         TCGA-77-8139         TCGA-77-8140 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-77-8143         TCGA-77-8144         TCGA-77-8145 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-77-8148         TCGA-77-8150         TCGA-77-8153 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-77-8154         TCGA-77-8156         TCGA-77-A5FZ 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-77-A5G3         TCGA-77-A5GB         TCGA-77-A5GH 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-96-8169         TCGA-96-8170         TCGA-96-A4JK 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
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"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-LA-A446         TCGA-MF-A522         TCGA-NC-A5HE 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
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  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
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  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
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  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
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  "19Q GAIN MUTATED"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
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  "19Q GAIN MUTATED"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
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  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
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  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
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  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
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  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
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  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
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  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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  "19Q GAIN MUTATED"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
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  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
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  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
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  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
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  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
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  "19Q GAIN MUTATED"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
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  "19Q GAIN MUTATED"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-34-2609         TCGA-34-5231         TCGA-34-5232 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-34-5234         TCGA-34-5236         TCGA-34-5239 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-34-5240         TCGA-34-5241         TCGA-34-5927 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-34-5928         TCGA-34-5929         TCGA-34-7107 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-3792 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4132 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-37-4133         TCGA-37-4135         TCGA-37-4141 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-37-5819         TCGA-39-5011         TCGA-39-5016 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-39-5019         TCGA-39-5021         TCGA-39-5022 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-39-5024         TCGA-39-5027         TCGA-39-5028 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-39-5029         TCGA-39-5030         TCGA-39-5031 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-39-5034         TCGA-39-5035         TCGA-39-5036 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-39-5037         TCGA-39-5039         TCGA-39-5040 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-43-8118 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-43-A474         TCGA-43-A475         TCGA-43-A56V 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-46-3768         TCGA-46-6025         TCGA-46-6026 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-51-4079         TCGA-51-4080         TCGA-51-4081 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-52-7622         TCGA-52-7809         TCGA-52-7810 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-52-7811         TCGA-52-7812         TCGA-56-1622 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-56-5897         TCGA-56-5898         TCGA-56-6545 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-56-6546         TCGA-56-7221         TCGA-56-7222 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-56-7223         TCGA-56-7579         TCGA-56-7580 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-56-7582         TCGA-56-7730         TCGA-56-7822 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-56-8503         TCGA-56-8504         TCGA-56-8622 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-56-8624         TCGA-56-8625         TCGA-56-8626 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-56-8628         TCGA-56-8629         TCGA-56-A49D 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-56-A4BX         TCGA-56-A4BY         TCGA-56-A4ZJ 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-56-A4ZK         TCGA-56-A5DS         TCGA-58-8386 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-58-8387         TCGA-58-8388         TCGA-58-8390 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-58-8391         TCGA-58-8392         TCGA-58-8393 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-58-A46J         TCGA-58-A46K         TCGA-58-A46L 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-58-A46M         TCGA-58-A46N         TCGA-60-2695 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-60-2696         TCGA-60-2697         TCGA-60-2698 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-60-2703         TCGA-60-2704         TCGA-60-2706 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2756 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-66-2770         TCGA-66-2771         TCGA-66-2773 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-66-2785         TCGA-66-2786         TCGA-66-2787 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-68-7755         TCGA-68-7756         TCGA-68-7757 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-68-8250         TCGA-68-8251         TCGA-77-6842 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-77-6843         TCGA-77-6844         TCGA-77-6845 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-77-7138         TCGA-77-7139         TCGA-77-7140 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-77-7141         TCGA-77-7142         TCGA-77-7335 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-77-7337         TCGA-77-7338         TCGA-77-7463 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-77-7465         TCGA-77-8007         TCGA-77-8008 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-77-8009         TCGA-77-8128         TCGA-77-8130 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-77-8131         TCGA-77-8133         TCGA-77-8136 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-77-8138         TCGA-77-8139         TCGA-77-8140 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-77-8143         TCGA-77-8144         TCGA-77-8145 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-77-8148         TCGA-77-8150         TCGA-77-8153 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-77-8154         TCGA-77-8156         TCGA-77-A5FZ 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-77-A5G3         TCGA-77-A5GB         TCGA-77-A5GH 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-96-8169         TCGA-96-8170         TCGA-96-A4JK 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-96-A4JL         TCGA-98-7454         TCGA-98-8020 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-LA-A446         TCGA-MF-A522         TCGA-NC-A5HE 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
[1] "hr=" "1"  
D35V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  19Q GAIN MUTATED         0       17       42        1        17        21
  19Q GAIN WILD-TYPE       1       51       91        0        33        50
                    vv
clus                 STAGE IIIA STAGE IIIB STAGE IV
  19Q GAIN MUTATED           22          6        2
  19Q GAIN WILD-TYPE         32         14        3
D35V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  19Q GAIN MUTATED    24  85  11   8
  19Q GAIN WILD-TYPE  69 165  33  11
D35V4, multiclass
    clus
vv   19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  T1               24                 69
  T2               85                165
  T3               11                 33
  T4                8                 11
                    vv
clus                  N0  N1  N2  N3
  19Q GAIN MUTATED    77  37  14   0
  19Q GAIN WILD-TYPE 176  72  20   5
D35V5, multiclass
    clus
vv   19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  N0               77                176
  N1               37                 72
  N2               14                 20
  N3                0                  5
                    vv
clus                  M0  M1  MX
  19Q GAIN MUTATED   110   2  15
  19Q GAIN WILD-TYPE 238   3  32
D35V6, multiclass
    clus
vv   19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  M0              110                238
  M1                2                  3
  MX               15                 32
D35V7, binary
                    cls
clus                   0   1
  19Q GAIN MUTATED    33  95
  19Q GAIN WILD-TYPE  68 210
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19Q GAIN MUTATED     33   95
  19Q GAIN WILD-TYPE   68  210
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  FEMALE               33                 68
  MALE                 95                210
D35V8, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  19Q GAIN MUTATED                                       7
  19Q GAIN WILD-TYPE                                     5
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  19Q GAIN MUTATED                                        0
  19Q GAIN WILD-TYPE                                      6
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  19Q GAIN MUTATED                                         0
  19Q GAIN WILD-TYPE                                       1
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  19Q GAIN MUTATED                                                           121
  19Q GAIN WILD-TYPE                                                         266
D35V9, multiclass
                                                             clus
vv                                                            19Q GAIN MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      7
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                     0
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                    0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              121
                                                             clus
vv                                                            19Q GAIN WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                        5
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                       6
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                      1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                266
D35V10, binary
                    cls
clus                   0   1
  19Q GAIN MUTATED     3 125
  19Q GAIN WILD-TYPE   9 269
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19Q GAIN MUTATED      3  125
  19Q GAIN WILD-TYPE    9  269
     clus
vv    19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  NO                 3                  9
  YES              125                269
D35V11, continuous
D35V12, continuous
                    vv
clus                  R0  R1  R2  RX
  19Q GAIN MUTATED   105   3   0   5
  19Q GAIN WILD-TYPE 225   5   4  13
D35V13, multiclass
    clus
vv   19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  R0              105                225
  R1                3                  5
  R2                0                  4
  RX                5                 13

Clustering(36) Variable = 20P GAIN MUTATION ANALYSIS
D36V1, survival
                    sevent
clus2                  0   1
  20P GAIN MUTATED   121  74
  20P GAIN WILD-TYPE 118  64
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
               195                182 
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
                74                 64 
$`20P GAIN MUTATED`
TCGA-18-3407 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 TCGA-18-3414 
        4.47        79.46         4.80        46.52        11.34        13.02 
TCGA-18-3417 TCGA-18-5592 TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 
       24.92         3.02       119.54        46.88        60.89        34.78 
TCGA-21-1080 TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 TCGA-21-5783 TCGA-21-5784 
      122.43         9.30       119.80         8.78        88.08        41.69 
TCGA-21-5786 TCGA-21-A5DI TCGA-22-1011 TCGA-22-1016 TCGA-22-4591 TCGA-22-4594 
       33.93        32.19         1.74        27.02        20.45        48.33 
TCGA-22-4595 TCGA-22-4604 TCGA-22-4605 TCGA-22-4609 TCGA-22-5471 TCGA-22-5472 
       24.13        13.12        32.02         9.53        31.73        64.90 
TCGA-22-5477 TCGA-22-5480 TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 TCGA-22-5491 
       44.22        71.34        11.74        18.84        30.08        56.32 
TCGA-22-A5C4 TCGA-33-4532 TCGA-33-4538 TCGA-33-4582 TCGA-33-4587 TCGA-33-4589 
        0.95         7.63        97.94       103.53        54.44        10.98 
TCGA-33-6738 TCGA-34-2596 TCGA-34-2600 TCGA-34-2605 TCGA-34-2608 TCGA-34-5231 
       26.99         2.63        61.61        28.96        32.84        50.24 
TCGA-34-5239 TCGA-34-5240 TCGA-34-5928 TCGA-34-7107 TCGA-37-3783 TCGA-37-4130 
       23.24        12.00        18.12         1.08         3.95         8.09 
TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5028 
        0.39         3.39        74.07        44.71        68.58         1.71 
TCGA-39-5029 TCGA-39-5031 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2576 
       24.33        27.35        35.64        35.70        17.88        40.21 
TCGA-43-2578 TCGA-43-3920 TCGA-43-5670 TCGA-43-6143 TCGA-43-6773 TCGA-43-7656 
       22.49        33.07        18.05        12.36         3.78         6.97 
TCGA-43-7657 TCGA-43-7658 TCGA-43-8118 TCGA-43-A474 TCGA-43-A56V TCGA-46-3768 
        1.58        66.51         2.93        11.61         5.06         9.96 
TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 
       10.65        13.87         0.39        29.95        17.79         5.42 
TCGA-52-7811 TCGA-56-1622 TCGA-56-5898 TCGA-56-6545 TCGA-56-7222 TCGA-56-7223 
        8.75        28.93        18.25         2.04         0.43         0.99 
TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 TCGA-56-7730 TCGA-56-7822 TCGA-56-8504 
        1.45         1.32         0.85         0.20         0.03         5.82 
TCGA-56-8622 TCGA-56-8624 TCGA-56-A49D TCGA-56-A4ZJ TCGA-56-A4ZK TCGA-58-8386 
        1.78         1.18         0.99         1.02         0.13         0.03 
TCGA-58-8391 TCGA-58-8393 TCGA-58-A46K TCGA-60-2695 TCGA-60-2698 TCGA-60-2703 
       71.24        34.78        34.36        21.07        10.22        96.82 
TCGA-60-2704 TCGA-60-2707 TCGA-60-2708 TCGA-60-2711 TCGA-60-2715 TCGA-60-2719 
       37.94        21.70        80.42        41.39        35.34        42.61 
TCGA-60-2720 TCGA-60-2722 TCGA-60-2723 TCGA-60-2726 TCGA-66-2737 TCGA-66-2742 
        3.16        29.85        35.90        11.77         2.01        21.07 
TCGA-66-2756 TCGA-66-2759 TCGA-66-2763 TCGA-66-2769 TCGA-66-2770 TCGA-66-2773 
        0.99        25.02         0.99         7.07        23.01         3.02 
TCGA-66-2777 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2787 
        2.01        12.03         3.98        12.00        24.95        40.01 
TCGA-66-2788 TCGA-66-2792 TCGA-66-2793 TCGA-66-2800 TCGA-68-7756 TCGA-68-8250 
       22.98        30.02        10.06        49.05         6.64         8.02 
TCGA-68-8251 TCGA-77-6842 TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 
        3.12        29.56        75.09        23.28        11.18        89.95 
TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 TCGA-77-7338 TCGA-77-8007 TCGA-77-8008 
       20.78         0.49        42.25         0.16         6.51        86.76 
TCGA-77-8009 TCGA-77-8130 TCGA-77-8133 TCGA-77-8136 TCGA-77-8143 TCGA-77-8156 
       53.95        82.92        53.92        39.09        26.40         0.33 
TCGA-77-A5G3 TCGA-77-A5GB TCGA-77-A5GH TCGA-85-6561 TCGA-85-7696 TCGA-85-7698 
      117.57        30.81        23.44         0.79         0.59         1.61 
TCGA-85-7843 TCGA-85-7844 TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 TCGA-85-8276 
        1.15         1.25         1.97         0.53        16.77         0.43 
TCGA-85-8277 TCGA-85-8287 TCGA-85-8350 TCGA-85-8353 TCGA-85-8481 TCGA-85-8664 
        0.36         1.45         1.97         1.78         0.66         0.10 
TCGA-85-8666 TCGA-85-A50M TCGA-85-A53L TCGA-90-7767 TCGA-90-7769 TCGA-90-A4ED 
       15.58         0.62         0.43         2.93        11.77         8.02 
TCGA-90-A4EE TCGA-92-7341 TCGA-92-8064 TCGA-94-7557 TCGA-94-7943 TCGA-96-7545 
       10.88         3.48         5.26         0.16        11.70        44.15 
TCGA-96-A4JK TCGA-98-8020 TCGA-98-8021 TCGA-98-8022 TCGA-J1-A4AH TCGA-L3-A4E7 
        8.98         2.73        13.58         7.33         7.30         1.15 
TCGA-L3-A524 TCGA-LA-A446 TCGA-NC-A5HI 
       14.76         1.18        37.32 

$`20P GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3408 TCGA-18-3415 TCGA-18-3416 TCGA-18-3419 TCGA-18-3421 
       12.16        81.07        59.51        28.34         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5595 TCGA-21-1072 TCGA-21-1075 
        6.15         2.79        90.51        27.16        99.16        70.13 
TCGA-21-1078 TCGA-21-1079 TCGA-21-5782 TCGA-21-5787 TCGA-22-0940 TCGA-22-0944 
       15.55        31.69        31.63        10.82        19.99         7.33 
TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 TCGA-22-1012 TCGA-22-1017 TCGA-22-4593 
       14.93         4.31        64.21        14.10        48.82        35.08 
TCGA-22-4596 TCGA-22-4599 TCGA-22-4601 TCGA-22-4607 TCGA-22-4613 TCGA-22-5473 
        0.56        38.17        34.75        19.30        11.77        63.52 
TCGA-22-5474 TCGA-22-5478 TCGA-22-5479 TCGA-22-5481 TCGA-22-5489 TCGA-22-5492 
       14.60         0.79        54.28        79.20        62.86        16.60 
TCGA-33-4533 TCGA-33-4547 TCGA-33-4566 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 
      114.05        43.10       173.79       141.34        14.07        19.76 
TCGA-34-2604 TCGA-34-2609 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5241 
       31.50        31.23        67.79        56.38         9.04        14.07 
TCGA-34-5927 TCGA-34-5929 TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 TCGA-37-4132 
       30.94         4.96         0.43         0.39         6.54         7.46 
TCGA-37-4133 TCGA-37-4135 TCGA-39-5011 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 
        7.82         6.81        47.80        55.17        70.03        60.76 
TCGA-39-5030 TCGA-39-5034 TCGA-39-5035 TCGA-39-5040 TCGA-43-2581 TCGA-43-3394 
        1.94        36.39        15.58        17.06        38.66        27.02 
TCGA-43-5668 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-43-8115 TCGA-43-8116 
       11.47        24.89        10.19         5.42         6.64         6.35 
TCGA-43-A475 TCGA-51-4080 TCGA-52-7810 TCGA-52-7812 TCGA-56-5897 TCGA-56-6546 
        9.73         0.39        30.31        27.45         0.10         1.02 
TCGA-56-7221 TCGA-56-8503 TCGA-56-8625 TCGA-56-8626 TCGA-56-8628 TCGA-56-8629 
        0.99         1.35         2.07         0.56         0.53         1.12 
TCGA-56-A4BX TCGA-56-A4BY TCGA-56-A5DS TCGA-58-8387 TCGA-58-8388 TCGA-58-8390 
        1.51         0.99         0.26        13.25        12.43        29.95 
TCGA-58-8392 TCGA-58-A46J TCGA-58-A46L TCGA-58-A46M TCGA-58-A46N TCGA-60-2696 
       16.47        64.87        36.59        23.24        17.72         3.58 
TCGA-60-2697 TCGA-60-2706 TCGA-60-2709 TCGA-60-2710 TCGA-60-2712 TCGA-60-2713 
       12.23        92.71        49.48        66.51         9.01        56.91 
TCGA-60-2714 TCGA-60-2716 TCGA-60-2721 TCGA-60-2724 TCGA-60-2725 TCGA-66-2727 
       50.33        48.49        32.28        23.57        26.79        16.96 
TCGA-66-2734 TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 TCGA-66-2757 
       43.10         0.99         1.02         2.01         0.92         0.99 
TCGA-66-2758 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2771 
       20.98         2.01         1.02         2.01         2.01        19.00 
TCGA-66-2778 TCGA-66-2785 TCGA-66-2786 TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 
       19.00         1.94        25.97         4.04        22.98         5.03 
TCGA-66-2794 TCGA-66-2795 TCGA-68-7755 TCGA-68-7757 TCGA-77-6843 TCGA-77-7335 
       54.08         4.01         2.73         6.94        73.08        70.09 
TCGA-77-7337 TCGA-77-7463 TCGA-77-7465 TCGA-77-8128 TCGA-77-8131 TCGA-77-8138 
      106.95        46.78        15.75        37.81        12.59        17.69 
TCGA-77-8139 TCGA-77-8140 TCGA-77-8144 TCGA-77-8145 TCGA-77-8148 TCGA-77-8150 
      104.09        11.54        27.39         6.97         9.63        54.41 
TCGA-77-8153 TCGA-77-8154 TCGA-77-A5FZ TCGA-85-6560 TCGA-85-6798 TCGA-85-7697 
       55.33        35.90       126.18         0.36         1.12         0.33 
TCGA-85-7699 TCGA-85-7950 TCGA-85-8048 TCGA-85-8071 TCGA-85-8072 TCGA-85-8288 
        0.03         1.97         0.85        14.07         1.18         1.78 
TCGA-85-8351 TCGA-85-8352 TCGA-85-8354 TCGA-85-8355 TCGA-85-8479 TCGA-85-8580 
        1.81         2.20         2.01         0.66         0.72        14.60 
TCGA-85-8582 TCGA-85-A4CL TCGA-85-A4QR TCGA-85-A513 TCGA-90-6837 TCGA-90-7766 
       13.91         0.46         0.82         0.79        24.89         9.50 
TCGA-90-7964 TCGA-92-7340 TCGA-92-8063 TCGA-92-8065 TCGA-94-7033 TCGA-96-7544 
       14.07         2.70         4.01         2.27         2.86        39.88 
TCGA-96-8169 TCGA-96-8170 TCGA-96-A4JL TCGA-98-7454 TCGA-98-8023 TCGA-MF-A522 
        6.18         6.90         6.02         8.42        10.13         3.02 
TCGA-NC-A5HE TCGA-NC-A5HG 
       56.61        50.86 

  20P GAIN MUTATED 20P GAIN WILD-TYPE 
              0.03               0.03 
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
            122.43             173.79 
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
             12.36              14.07 
[1] "0.0 - 122.4 (12.4)" "0.0 - 173.8 (14.1)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-22-A5C4         TCGA-33-4532         TCGA-33-4533 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-33-4538         TCGA-33-4547         TCGA-33-4566 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-33-4582         TCGA-33-4583         TCGA-33-4586 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-33-4587         TCGA-33-4589         TCGA-33-6737 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-33-6738         TCGA-34-2596         TCGA-34-2600 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-34-2604         TCGA-34-2605         TCGA-34-2608 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-34-2609         TCGA-34-5231         TCGA-34-5232 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-34-5234         TCGA-34-5236         TCGA-34-5239 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-34-5240         TCGA-34-5241         TCGA-34-5927 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-34-5928         TCGA-34-5929         TCGA-34-7107 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-3792 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4132 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-37-4133         TCGA-37-4135         TCGA-37-4141 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-37-5819         TCGA-39-5011         TCGA-39-5016 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-39-5019         TCGA-39-5021         TCGA-39-5022 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-39-5024         TCGA-39-5027         TCGA-39-5028 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-39-5029         TCGA-39-5030         TCGA-39-5031 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-39-5034         TCGA-39-5035         TCGA-39-5036 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-39-5037         TCGA-39-5039         TCGA-39-5040 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-43-8115         TCGA-43-8116         TCGA-43-8118 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-43-A474         TCGA-43-A475         TCGA-43-A56V 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-46-3768         TCGA-46-6025         TCGA-46-6026 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-51-4079         TCGA-51-4080         TCGA-51-4081 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-52-7622         TCGA-52-7809         TCGA-52-7810 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-52-7811         TCGA-52-7812         TCGA-56-1622 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-56-5897         TCGA-56-5898         TCGA-56-6545 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-56-6546         TCGA-56-7221         TCGA-56-7222 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-56-7223         TCGA-56-7579         TCGA-56-7580 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-56-7582         TCGA-56-7730         TCGA-56-7822 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-56-8503         TCGA-56-8504         TCGA-56-8622 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-56-8624         TCGA-56-8625         TCGA-56-8626 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-56-8628         TCGA-56-8629         TCGA-56-A49D 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-56-A4BX         TCGA-56-A4BY         TCGA-56-A4ZJ 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-56-A4ZK         TCGA-56-A5DS         TCGA-58-8386 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-58-8387         TCGA-58-8388         TCGA-58-8390 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-58-8391         TCGA-58-8392         TCGA-58-8393 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-58-A46J         TCGA-58-A46K         TCGA-58-A46L 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-58-A46M         TCGA-58-A46N         TCGA-60-2695 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-60-2696         TCGA-60-2697         TCGA-60-2698 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-60-2703         TCGA-60-2704         TCGA-60-2706 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2756 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-66-2770         TCGA-66-2771         TCGA-66-2773 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-66-2785         TCGA-66-2786         TCGA-66-2787 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-68-7755         TCGA-68-7756         TCGA-68-7757 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-68-8250         TCGA-68-8251         TCGA-77-6842 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-77-6843         TCGA-77-6844         TCGA-77-6845 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-77-7138         TCGA-77-7139         TCGA-77-7140 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-77-7141         TCGA-77-7142         TCGA-77-7335 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-77-7337         TCGA-77-7338         TCGA-77-7463 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-77-7465         TCGA-77-8007         TCGA-77-8008 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-77-8009         TCGA-77-8128         TCGA-77-8130 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-77-8131         TCGA-77-8133         TCGA-77-8136 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-77-8138         TCGA-77-8139         TCGA-77-8140 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-77-8143         TCGA-77-8144         TCGA-77-8145 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-77-8148         TCGA-77-8150         TCGA-77-8153 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-77-8154         TCGA-77-8156         TCGA-77-A5FZ 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-77-A5G3         TCGA-77-A5GB         TCGA-77-A5GH 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-96-8169         TCGA-96-8170         TCGA-96-A4JK 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-96-A4JL         TCGA-98-7454         TCGA-98-8020 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-LA-A446         TCGA-MF-A522         TCGA-NC-A5HE 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-22-A5C4         TCGA-33-4532         TCGA-33-4533 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-33-4538         TCGA-33-4547         TCGA-33-4566 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-33-4582         TCGA-33-4583         TCGA-33-4586 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-33-4587         TCGA-33-4589         TCGA-33-6737 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-33-6738         TCGA-34-2596         TCGA-34-2600 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-34-2604         TCGA-34-2605         TCGA-34-2608 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-34-2609         TCGA-34-5231         TCGA-34-5232 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-34-5234         TCGA-34-5236         TCGA-34-5239 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-34-5240         TCGA-34-5241         TCGA-34-5927 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-34-5928         TCGA-34-5929         TCGA-34-7107 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-3792 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4132 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-37-4133         TCGA-37-4135         TCGA-37-4141 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-37-5819         TCGA-39-5011         TCGA-39-5016 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-39-5019         TCGA-39-5021         TCGA-39-5022 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-39-5024         TCGA-39-5027         TCGA-39-5028 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-39-5029         TCGA-39-5030         TCGA-39-5031 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-39-5034         TCGA-39-5035         TCGA-39-5036 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-39-5037         TCGA-39-5039         TCGA-39-5040 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-43-8115         TCGA-43-8116         TCGA-43-8118 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-43-A474         TCGA-43-A475         TCGA-43-A56V 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-46-3768         TCGA-46-6025         TCGA-46-6026 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-51-4079         TCGA-51-4080         TCGA-51-4081 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-52-7622         TCGA-52-7809         TCGA-52-7810 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-52-7811         TCGA-52-7812         TCGA-56-1622 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-56-5897         TCGA-56-5898         TCGA-56-6545 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-56-6546         TCGA-56-7221         TCGA-56-7222 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-56-7223         TCGA-56-7579         TCGA-56-7580 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-56-7582         TCGA-56-7730         TCGA-56-7822 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-56-8503         TCGA-56-8504         TCGA-56-8622 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-56-8624         TCGA-56-8625         TCGA-56-8626 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-56-8628         TCGA-56-8629         TCGA-56-A49D 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-56-A4BX         TCGA-56-A4BY         TCGA-56-A4ZJ 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-56-A4ZK         TCGA-56-A5DS         TCGA-58-8386 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-58-8387         TCGA-58-8388         TCGA-58-8390 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-58-8391         TCGA-58-8392         TCGA-58-8393 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-58-A46J         TCGA-58-A46K         TCGA-58-A46L 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-58-A46M         TCGA-58-A46N         TCGA-60-2695 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-60-2696         TCGA-60-2697         TCGA-60-2698 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-60-2703         TCGA-60-2704         TCGA-60-2706 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2756 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-66-2770         TCGA-66-2771         TCGA-66-2773 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-66-2785         TCGA-66-2786         TCGA-66-2787 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-68-7755         TCGA-68-7756         TCGA-68-7757 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-68-8250         TCGA-68-8251         TCGA-77-6842 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-77-6843         TCGA-77-6844         TCGA-77-6845 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-77-7138         TCGA-77-7139         TCGA-77-7140 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-77-7141         TCGA-77-7142         TCGA-77-7335 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-77-7337         TCGA-77-7338         TCGA-77-7463 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-77-7465         TCGA-77-8007         TCGA-77-8008 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-77-8009         TCGA-77-8128         TCGA-77-8130 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-77-8131         TCGA-77-8133         TCGA-77-8136 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-77-8138         TCGA-77-8139         TCGA-77-8140 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-77-8143         TCGA-77-8144         TCGA-77-8145 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-77-8148         TCGA-77-8150         TCGA-77-8153 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-77-8154         TCGA-77-8156         TCGA-77-A5FZ 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-77-A5G3         TCGA-77-A5GB         TCGA-77-A5GH 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-96-8169         TCGA-96-8170         TCGA-96-A4JK 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-96-A4JL         TCGA-98-7454         TCGA-98-8020 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-LA-A446         TCGA-MF-A522         TCGA-NC-A5HE 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-22-A5C4         TCGA-33-4532         TCGA-33-4533 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-33-4538         TCGA-33-4547         TCGA-33-4566 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-33-4582         TCGA-33-4583         TCGA-33-4586 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-33-4587         TCGA-33-4589         TCGA-33-6737 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-33-6738         TCGA-34-2596         TCGA-34-2600 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-34-2604         TCGA-34-2605         TCGA-34-2608 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-34-2609         TCGA-34-5231         TCGA-34-5232 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-34-5234         TCGA-34-5236         TCGA-34-5239 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-34-5240         TCGA-34-5241         TCGA-34-5927 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-34-5928         TCGA-34-5929         TCGA-34-7107 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-3792 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4132 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-37-4133         TCGA-37-4135         TCGA-37-4141 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-37-5819         TCGA-39-5011         TCGA-39-5016 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-39-5019         TCGA-39-5021         TCGA-39-5022 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-39-5024         TCGA-39-5027         TCGA-39-5028 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-39-5029         TCGA-39-5030         TCGA-39-5031 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-39-5034         TCGA-39-5035         TCGA-39-5036 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-39-5037         TCGA-39-5039         TCGA-39-5040 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-43-8115         TCGA-43-8116         TCGA-43-8118 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-43-A474         TCGA-43-A475         TCGA-43-A56V 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-46-3768         TCGA-46-6025         TCGA-46-6026 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-51-4079         TCGA-51-4080         TCGA-51-4081 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-52-7622         TCGA-52-7809         TCGA-52-7810 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-52-7811         TCGA-52-7812         TCGA-56-1622 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-56-5897         TCGA-56-5898         TCGA-56-6545 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-56-6546         TCGA-56-7221         TCGA-56-7222 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-56-7223         TCGA-56-7579         TCGA-56-7580 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-56-7582         TCGA-56-7730         TCGA-56-7822 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-56-8503         TCGA-56-8504         TCGA-56-8622 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-56-8624         TCGA-56-8625         TCGA-56-8626 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-56-8628         TCGA-56-8629         TCGA-56-A49D 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-56-A4BX         TCGA-56-A4BY         TCGA-56-A4ZJ 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-56-A4ZK         TCGA-56-A5DS         TCGA-58-8386 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-58-8387         TCGA-58-8388         TCGA-58-8390 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-58-8391         TCGA-58-8392         TCGA-58-8393 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-58-A46J         TCGA-58-A46K         TCGA-58-A46L 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-58-A46M         TCGA-58-A46N         TCGA-60-2695 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-60-2696         TCGA-60-2697         TCGA-60-2698 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-60-2703         TCGA-60-2704         TCGA-60-2706 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2756 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-66-2770         TCGA-66-2771         TCGA-66-2773 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-66-2785         TCGA-66-2786         TCGA-66-2787 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-68-7755         TCGA-68-7756         TCGA-68-7757 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-68-8250         TCGA-68-8251         TCGA-77-6842 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-77-6843         TCGA-77-6844         TCGA-77-6845 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-77-7138         TCGA-77-7139         TCGA-77-7140 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-77-7141         TCGA-77-7142         TCGA-77-7335 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-77-7337         TCGA-77-7338         TCGA-77-7463 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-77-7465         TCGA-77-8007         TCGA-77-8008 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-77-8009         TCGA-77-8128         TCGA-77-8130 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-77-8131         TCGA-77-8133         TCGA-77-8136 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-77-8138         TCGA-77-8139         TCGA-77-8140 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-77-8143         TCGA-77-8144         TCGA-77-8145 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-77-8148         TCGA-77-8150         TCGA-77-8153 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-77-8154         TCGA-77-8156         TCGA-77-A5FZ 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-77-A5G3         TCGA-77-A5GB         TCGA-77-A5GH 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-96-8169         TCGA-96-8170         TCGA-96-A4JK 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-96-A4JL         TCGA-98-7454         TCGA-98-8020 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-LA-A446         TCGA-MF-A522         TCGA-NC-A5HE 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
[1] "hr=" "1.2"
D36V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  20P GAIN MUTATED         1       32       70        1        22        40
  20P GAIN WILD-TYPE       0       36       63        0        28        31
                    vv
clus                 STAGE IIIA STAGE IIIB STAGE IV
  20P GAIN MUTATED           30          7        4
  20P GAIN WILD-TYPE         24         13        1
D36V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  20P GAIN MUTATED    44 131  25   9
  20P GAIN WILD-TYPE  49 119  19  10
D36V4, multiclass
    clus
vv   20P GAIN MUTATED 20P GAIN WILD-TYPE
  T1               44                 49
  T2              131                119
  T3               25                 19
  T4                9                 10
                    vv
clus                  N0  N1  N2  N3
  20P GAIN MUTATED   130  58  17   1
  20P GAIN WILD-TYPE 123  51  17   4
D36V5, multiclass
    clus
vv   20P GAIN MUTATED 20P GAIN WILD-TYPE
  N0              130                123
  N1               58                 51
  N2               17                 17
  N3                1                  4
                    vv
clus                  M0  M1  MX
  20P GAIN MUTATED   180   4  22
  20P GAIN WILD-TYPE 168   1  25
D36V6, multiclass
    clus
vv   20P GAIN MUTATED 20P GAIN WILD-TYPE
  M0              180                168
  M1                4                  1
  MX               22                 25
D36V7, binary
                    cls
clus                   0   1
  20P GAIN MUTATED    44 165
  20P GAIN WILD-TYPE  57 140
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20P GAIN MUTATED     44  165
  20P GAIN WILD-TYPE   57  140
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  FEMALE               44                 57
  MALE                165                140
D36V8, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  20P GAIN MUTATED                                       7
  20P GAIN WILD-TYPE                                     5
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  20P GAIN MUTATED                                        2
  20P GAIN WILD-TYPE                                      4
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  20P GAIN MUTATED                                         1
  20P GAIN WILD-TYPE                                       0
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  20P GAIN MUTATED                                                           199
  20P GAIN WILD-TYPE                                                         188
D36V9, multiclass
                                                             clus
vv                                                            20P GAIN MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      7
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                     2
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              199
                                                             clus
vv                                                            20P GAIN WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                        5
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                       4
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                      0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                188
D36V10, binary
                    cls
clus                   0   1
  20P GAIN MUTATED     8 201
  20P GAIN WILD-TYPE   4 193
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20P GAIN MUTATED      8  201
  20P GAIN WILD-TYPE    4  193
     clus
vv    20P GAIN MUTATED 20P GAIN WILD-TYPE
  NO                 8                  4
  YES              201                193
D36V11, continuous
D36V12, continuous
                    vv
clus                  R0  R1  R2  RX
  20P GAIN MUTATED   172   3   3   8
  20P GAIN WILD-TYPE 158   5   1  10
D36V13, multiclass
    clus
vv   20P GAIN MUTATED 20P GAIN WILD-TYPE
  R0              172                158
  R1                3                  5
  R2                3                  1
  RX                8                 10

Clustering(37) Variable = 20Q GAIN MUTATION ANALYSIS
D37V1, survival
                    sevent
clus2                  0   1
  20Q GAIN MUTATED   117  69
  20Q GAIN WILD-TYPE 122  69
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
               186                191 
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
                69                 69 
$`20Q GAIN MUTATED`
TCGA-18-3407 TCGA-18-3409 TCGA-18-3410 TCGA-18-3412 TCGA-18-3414 TCGA-18-3417 
        4.47        79.46         4.80        11.34        13.02        24.92 
TCGA-18-5592 TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1079 
        3.02       119.54        46.88        60.89        34.78        31.69 
TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 
        9.30       119.80         8.78        41.69        33.93        10.82 
TCGA-21-A5DI TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 
       32.19         1.74        14.10        27.02        20.45        35.08 
TCGA-22-4594 TCGA-22-4595 TCGA-22-4605 TCGA-22-5472 TCGA-22-5480 TCGA-22-5483 
       48.33        24.13        32.02        64.90        71.34        18.84 
TCGA-22-5485 TCGA-22-5491 TCGA-22-A5C4 TCGA-33-4532 TCGA-33-4538 TCGA-33-4582 
       30.08        56.32         0.95         7.63        97.94       103.53 
TCGA-33-4587 TCGA-33-4589 TCGA-33-6738 TCGA-34-2596 TCGA-34-2604 TCGA-34-2605 
       54.44        10.98        26.99         2.63        31.50        28.96 
TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 TCGA-34-5239 TCGA-34-5240 TCGA-34-5928 
       32.84        31.23        50.24        23.24        12.00        18.12 
TCGA-37-3783 TCGA-37-3792 TCGA-37-4130 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 
        3.95         0.39         8.09         6.81         0.39         3.39 
TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 TCGA-39-5028 TCGA-39-5029 TCGA-39-5031 
       47.80        74.07        44.71         1.71        24.33        27.35 
TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2576 TCGA-43-2578 TCGA-43-3920 
       35.64        35.70        17.88        40.21        22.49        33.07 
TCGA-43-5670 TCGA-43-6143 TCGA-43-7656 TCGA-43-7658 TCGA-43-8118 TCGA-43-A56V 
       18.05        12.36         6.97        66.51         2.93         5.06 
TCGA-46-3768 TCGA-46-6026 TCGA-52-7809 TCGA-52-7810 TCGA-52-7811 TCGA-56-1622 
        9.96        13.87         5.42        30.31         8.75        28.93 
TCGA-56-5898 TCGA-56-6545 TCGA-56-6546 TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 
       18.25         2.04         1.02         0.43         0.99         1.45 
TCGA-56-7582 TCGA-56-7822 TCGA-56-8504 TCGA-56-8624 TCGA-56-8626 TCGA-56-A4ZJ 
        0.85         0.03         5.82         1.18         0.56         1.02 
TCGA-56-A4ZK TCGA-58-8386 TCGA-58-8393 TCGA-58-A46K TCGA-60-2695 TCGA-60-2703 
        0.13         0.03        34.78        34.36        21.07        96.82 
TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 TCGA-60-2711 TCGA-60-2714 TCGA-60-2715 
       92.71        21.70        80.42        41.39        50.33        35.34 
TCGA-60-2719 TCGA-60-2720 TCGA-60-2722 TCGA-60-2726 TCGA-66-2737 TCGA-66-2742 
       42.61         3.16        29.85        11.77         2.01        21.07 
TCGA-66-2744 TCGA-66-2756 TCGA-66-2757 TCGA-66-2759 TCGA-66-2763 TCGA-66-2769 
        0.99         0.99         0.99        25.02         0.99         7.07 
TCGA-66-2770 TCGA-66-2777 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2785 
       23.01         2.01        12.03         3.98        12.00         1.94 
TCGA-66-2787 TCGA-66-2788 TCGA-66-2793 TCGA-66-2800 TCGA-68-7756 TCGA-68-8250 
       40.01        22.98        10.06        49.05         6.64         8.02 
TCGA-68-8251 TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 
        3.12        23.28        11.18        89.95        20.78         0.49 
TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 TCGA-77-8007 TCGA-77-8008 
      106.95         0.16        46.78        15.75         6.51        86.76 
TCGA-77-8130 TCGA-77-8133 TCGA-77-8136 TCGA-77-8143 TCGA-77-8145 TCGA-77-8148 
       82.92        53.92        39.09        26.40         6.97         9.63 
TCGA-77-A5G3 TCGA-77-A5GB TCGA-77-A5GH TCGA-85-6560 TCGA-85-6561 TCGA-85-7696 
      117.57        30.81        23.44         0.36         0.79         0.59 
TCGA-85-7843 TCGA-85-7844 TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 TCGA-85-8276 
        1.15         1.25         1.97         0.53        16.77         0.43 
TCGA-85-8277 TCGA-85-8287 TCGA-85-8350 TCGA-85-8351 TCGA-85-8353 TCGA-85-8354 
        0.36         1.45         1.97         1.81         1.78         2.01 
TCGA-85-8481 TCGA-85-8582 TCGA-85-8664 TCGA-85-8666 TCGA-85-A4QR TCGA-85-A50M 
        0.66        13.91         0.10        15.58         0.82         0.62 
TCGA-85-A53L TCGA-90-7767 TCGA-90-7769 TCGA-90-A4ED TCGA-90-A4EE TCGA-92-7341 
        0.43         2.93        11.77         8.02        10.88         3.48 
TCGA-92-8064 TCGA-94-7557 TCGA-94-7943 TCGA-96-7545 TCGA-98-8020 TCGA-98-8022 
        5.26         0.16        11.70        44.15         2.73         7.33 
TCGA-J1-A4AH TCGA-L3-A4E7 TCGA-LA-A446 TCGA-MF-A522 TCGA-NC-A5HG TCGA-NC-A5HI 
        7.30         1.15         1.18         3.02        50.86        37.32 

$`20Q GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3408 TCGA-18-3411 TCGA-18-3415 TCGA-18-3416 TCGA-18-3419 
       12.16        81.07        46.52        59.51        28.34         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5595 TCGA-21-1072 
       43.76         6.15         2.79        90.51        27.16        99.16 
TCGA-21-1075 TCGA-21-1078 TCGA-21-1080 TCGA-21-5782 TCGA-21-5783 TCGA-22-0940 
       70.13        15.55       122.43        31.63        88.08        19.99 
TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 TCGA-22-1017 TCGA-22-4596 
        7.33        14.93         4.31        64.21        48.82         0.56 
TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 
       38.17        34.75        13.12        19.30         9.53        11.77 
TCGA-22-5471 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 
       31.73        63.52        14.60        44.22         0.79        54.28 
TCGA-22-5481 TCGA-22-5482 TCGA-22-5489 TCGA-22-5492 TCGA-33-4533 TCGA-33-4547 
       79.20        11.74        62.86        16.60       114.05        43.10 
TCGA-33-4566 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2600 TCGA-34-5232 
      173.79       141.34        14.07        19.76        61.61        67.79 
TCGA-34-5234 TCGA-34-5236 TCGA-34-5241 TCGA-34-5927 TCGA-34-5929 TCGA-34-7107 
       56.38         9.04        14.07        30.94         4.96         1.08 
TCGA-37-3789 TCGA-37-4129 TCGA-37-4132 TCGA-37-4133 TCGA-39-5021 TCGA-39-5022 
        0.43         6.54         7.46         7.82        68.58        55.17 
TCGA-39-5024 TCGA-39-5027 TCGA-39-5030 TCGA-39-5034 TCGA-39-5035 TCGA-39-5040 
       70.03        60.76         1.94        36.39        15.58        17.06 
TCGA-43-2581 TCGA-43-3394 TCGA-43-5668 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 
       38.66        27.02        11.47        24.89        10.19         5.42 
TCGA-43-6773 TCGA-43-7657 TCGA-43-8115 TCGA-43-8116 TCGA-43-A474 TCGA-43-A475 
        3.78         1.58         6.64         6.35        11.61         9.73 
TCGA-46-6025 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 TCGA-52-7812 
       10.65         0.39         0.39        29.95        17.79        27.45 
TCGA-56-5897 TCGA-56-7221 TCGA-56-7580 TCGA-56-7730 TCGA-56-8503 TCGA-56-8622 
        0.10         0.99         1.32         0.20         1.35         1.78 
TCGA-56-8625 TCGA-56-8628 TCGA-56-8629 TCGA-56-A49D TCGA-56-A4BX TCGA-56-A4BY 
        2.07         0.53         1.12         0.99         1.51         0.99 
TCGA-56-A5DS TCGA-58-8387 TCGA-58-8388 TCGA-58-8390 TCGA-58-8391 TCGA-58-8392 
        0.26        13.25        12.43        29.95        71.24        16.47 
TCGA-58-A46J TCGA-58-A46L TCGA-58-A46M TCGA-58-A46N TCGA-60-2696 TCGA-60-2697 
       64.87        36.59        23.24        17.72         3.58        12.23 
TCGA-60-2698 TCGA-60-2704 TCGA-60-2709 TCGA-60-2710 TCGA-60-2712 TCGA-60-2713 
       10.22        37.94        49.48        66.51         9.01        56.91 
TCGA-60-2716 TCGA-60-2721 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-66-2727 
       48.49        32.28        35.90        23.57        26.79        16.96 
TCGA-66-2734 TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 TCGA-66-2758 TCGA-66-2765 
       43.10         1.02         2.01         0.92        20.98         2.01 
TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2771 TCGA-66-2773 TCGA-66-2778 
        1.02         2.01         2.01        19.00         3.02        19.00 
TCGA-66-2783 TCGA-66-2786 TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 TCGA-66-2792 
       24.95        25.97         4.04        22.98         5.03        30.02 
TCGA-66-2794 TCGA-66-2795 TCGA-68-7755 TCGA-68-7757 TCGA-77-6842 TCGA-77-6843 
       54.08         4.01         2.73         6.94        29.56        73.08 
TCGA-77-6844 TCGA-77-7142 TCGA-77-7335 TCGA-77-8009 TCGA-77-8128 TCGA-77-8131 
       75.09        42.25        70.09        53.95        37.81        12.59 
TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 TCGA-77-8144 TCGA-77-8150 TCGA-77-8153 
       17.69       104.09        11.54        27.39        54.41        55.33 
TCGA-77-8154 TCGA-77-8156 TCGA-77-A5FZ TCGA-85-6798 TCGA-85-7697 TCGA-85-7698 
       35.90         0.33       126.18         1.12         0.33         1.61 
TCGA-85-7699 TCGA-85-7950 TCGA-85-8048 TCGA-85-8071 TCGA-85-8072 TCGA-85-8288 
        0.03         1.97         0.85        14.07         1.18         1.78 
TCGA-85-8352 TCGA-85-8355 TCGA-85-8479 TCGA-85-8580 TCGA-85-A4CL TCGA-85-A513 
        2.20         0.66         0.72        14.60         0.46         0.79 
TCGA-90-6837 TCGA-90-7766 TCGA-90-7964 TCGA-92-7340 TCGA-92-8063 TCGA-92-8065 
       24.89         9.50        14.07         2.70         4.01         2.27 
TCGA-94-7033 TCGA-96-7544 TCGA-96-8169 TCGA-96-8170 TCGA-96-A4JK TCGA-96-A4JL 
        2.86        39.88         6.18         6.90         8.98         6.02 
TCGA-98-7454 TCGA-98-8021 TCGA-98-8023 TCGA-L3-A524 TCGA-NC-A5HE 
        8.42        13.58        10.13        14.76        56.61 

  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
              0.03               0.03 
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
            119.80             173.79 
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
             12.00              14.07 
[1] "0.0 - 119.8 (12.0)" "0.0 - 173.8 (14.1)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
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"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
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  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
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  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
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  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
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  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
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  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
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  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
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  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
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"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-39-5037         TCGA-39-5039         TCGA-39-5040 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-43-8115         TCGA-43-8116         TCGA-43-8118 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-43-A474         TCGA-43-A475         TCGA-43-A56V 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-46-3768         TCGA-46-6025         TCGA-46-6026 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-51-4079         TCGA-51-4080         TCGA-51-4081 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-52-7622         TCGA-52-7809         TCGA-52-7810 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-52-7811         TCGA-52-7812         TCGA-56-1622 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-56-5897         TCGA-56-5898         TCGA-56-6545 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-56-6546         TCGA-56-7221         TCGA-56-7222 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-56-7223         TCGA-56-7579         TCGA-56-7580 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-56-7582         TCGA-56-7730         TCGA-56-7822 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-56-8503         TCGA-56-8504         TCGA-56-8622 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-56-8624         TCGA-56-8625         TCGA-56-8626 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-56-8628         TCGA-56-8629         TCGA-56-A49D 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-56-A4BX         TCGA-56-A4BY         TCGA-56-A4ZJ 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-56-A4ZK         TCGA-56-A5DS         TCGA-58-8386 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-58-8387         TCGA-58-8388         TCGA-58-8390 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-58-8391         TCGA-58-8392         TCGA-58-8393 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-58-A46J         TCGA-58-A46K         TCGA-58-A46L 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-58-A46M         TCGA-58-A46N         TCGA-60-2695 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-60-2696         TCGA-60-2697         TCGA-60-2698 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-60-2703         TCGA-60-2704         TCGA-60-2706 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2756 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-66-2770         TCGA-66-2771         TCGA-66-2773 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-66-2785         TCGA-66-2786         TCGA-66-2787 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-68-7755         TCGA-68-7756         TCGA-68-7757 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-68-8250         TCGA-68-8251         TCGA-77-6842 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-77-6843         TCGA-77-6844         TCGA-77-6845 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-77-7138         TCGA-77-7139         TCGA-77-7140 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-77-7141         TCGA-77-7142         TCGA-77-7335 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-77-7337         TCGA-77-7338         TCGA-77-7463 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-77-7465         TCGA-77-8007         TCGA-77-8008 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-77-8009         TCGA-77-8128         TCGA-77-8130 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-77-8131         TCGA-77-8133         TCGA-77-8136 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-77-8138         TCGA-77-8139         TCGA-77-8140 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-77-8143         TCGA-77-8144         TCGA-77-8145 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-77-8148         TCGA-77-8150         TCGA-77-8153 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-77-8154         TCGA-77-8156         TCGA-77-A5FZ 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-77-A5G3         TCGA-77-A5GB         TCGA-77-A5GH 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-96-8169         TCGA-96-8170         TCGA-96-A4JK 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-96-A4JL         TCGA-98-7454         TCGA-98-8020 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-LA-A446         TCGA-MF-A522         TCGA-NC-A5HE 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
[1] "hr=" "1.2"
D37V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  20Q GAIN MUTATED         1       31       64        0        22        35
  20Q GAIN WILD-TYPE       0       37       69        1        28        36
                    vv
clus                 STAGE IIIA STAGE IIIB STAGE IV
  20Q GAIN MUTATED           31          8        4
  20Q GAIN WILD-TYPE         23         12        1
D37V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  20Q GAIN MUTATED    42 120  26  10
  20Q GAIN WILD-TYPE  51 130  18   9
D37V4, multiclass
    clus
vv   20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  T1               42                 51
  T2              120                130
  T3               26                 18
  T4               10                  9
                    vv
clus                  N0  N1  N2  N3
  20Q GAIN MUTATED   124  55  16   0
  20Q GAIN WILD-TYPE 129  54  18   5
D37V5, multiclass
    clus
vv   20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  N0              124                129
  N1               55                 54
  N2               16                 18
  N3                0                  5
                    vv
clus                  M0  M1  MX
  20Q GAIN MUTATED   170   4  22
  20Q GAIN WILD-TYPE 178   1  25
D37V6, multiclass
    clus
vv   20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  M0              170                178
  M1                4                  1
  MX               22                 25
D37V7, binary
                    cls
clus                   0   1
  20Q GAIN MUTATED    39 159
  20Q GAIN WILD-TYPE  62 146
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20Q GAIN MUTATED     39  159
  20Q GAIN WILD-TYPE   62  146
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  FEMALE               39                 62
  MALE                159                146
D37V8, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  20Q GAIN MUTATED                                       8
  20Q GAIN WILD-TYPE                                     4
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  20Q GAIN MUTATED                                        2
  20Q GAIN WILD-TYPE                                      4
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  20Q GAIN MUTATED                                         1
  20Q GAIN WILD-TYPE                                       0
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  20Q GAIN MUTATED                                                           187
  20Q GAIN WILD-TYPE                                                         200
D37V9, multiclass
                                                             clus
vv                                                            20Q GAIN MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      8
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                     2
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              187
                                                             clus
vv                                                            20Q GAIN WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                        4
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                       4
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                      0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                200
D37V10, binary
                    cls
clus                   0   1
  20Q GAIN MUTATED     7 191
  20Q GAIN WILD-TYPE   5 203
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20Q GAIN MUTATED      7  191
  20Q GAIN WILD-TYPE    5  203
     clus
vv    20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  NO                 7                  5
  YES              191                203
D37V11, continuous
D37V12, continuous
                    vv
clus                  R0  R1  R2  RX
  20Q GAIN MUTATED   163   4   1   7
  20Q GAIN WILD-TYPE 167   4   3  11
D37V13, multiclass
    clus
vv   20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  R0              163                167
  R1                4                  4
  R2                1                  3
  RX                7                 11

Clustering(38) Variable = 21Q GAIN MUTATION ANALYSIS
D38V1, survival
                    sevent
clus2                  0   1
  21Q GAIN MUTATED    29  14
  21Q GAIN WILD-TYPE 210 124
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                43                334 
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                14                124 
$`21Q GAIN MUTATED`
TCGA-18-3410 TCGA-21-1077 TCGA-21-1081 TCGA-21-1082 TCGA-21-A5DI TCGA-22-1011 
        4.80        34.78         9.30       119.80        32.19         1.74 
TCGA-22-4595 TCGA-22-A5C4 TCGA-33-4566 TCGA-33-4583 TCGA-33-4587 TCGA-34-2596 
       24.13         0.95       173.79       141.34        54.44         2.63 
TCGA-34-2605 TCGA-34-5240 TCGA-34-5928 TCGA-39-5028 TCGA-43-6143 TCGA-43-6647 
       28.96        12.00        18.12         1.71        12.36        24.89 
TCGA-43-A475 TCGA-56-7221 TCGA-56-8504 TCGA-56-A4BY TCGA-60-2706 TCGA-60-2714 
        9.73         0.99         5.82         0.99        92.71        50.33 
TCGA-60-2724 TCGA-66-2756 TCGA-66-2767 TCGA-66-2770 TCGA-66-2783 TCGA-77-6844 
       23.57         0.99         2.01        23.01        24.95        75.09 
TCGA-77-7139 TCGA-77-8130 TCGA-77-8139 TCGA-77-8143 TCGA-85-6560 TCGA-85-7844 
       89.95        82.92       104.09        26.40         0.36         1.25 
TCGA-85-7950 TCGA-85-8277 TCGA-85-8353 TCGA-92-7340 TCGA-96-7545 TCGA-NC-A5HG 
        1.97         0.36         1.78         2.70        44.15        50.86 
TCGA-NC-A5HI 
       37.32 

$`21Q GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07        79.46        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       13.02        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       119.54 
TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1078 TCGA-21-1079 
       46.88        99.16        70.13        60.89        15.55        31.69 
TCGA-21-1080 TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 TCGA-21-5786 
      122.43         8.78        31.63        88.08        41.69        33.93 
TCGA-21-5787 TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 
       10.82        19.99         7.33        14.93         4.31        64.21 
TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 TCGA-22-4593 TCGA-22-4594 
       14.10        27.02        48.82        20.45        35.08        48.33 
TCGA-22-4596 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 
        0.56        38.17        34.75        13.12        32.02        19.30 
TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 
        9.53        11.77        31.73        64.90        63.52        14.60 
TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 TCGA-22-5482 
       44.22         0.79        54.28        71.34        79.20        11.74 
TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 
       18.84        30.08        62.86        56.32        16.60         7.63 
TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4582 TCGA-33-4586 TCGA-33-4589 
      114.05        97.94        43.10       103.53        14.07        10.98 
TCGA-33-6737 TCGA-33-6738 TCGA-34-2600 TCGA-34-2604 TCGA-34-2608 TCGA-34-2609 
       19.76        26.99        61.61        31.50        32.84        31.23 
TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5241 
       50.24        67.79        56.38         9.04        23.24        14.07 
TCGA-34-5927 TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 
       30.94         4.96         1.08         3.95         0.43         0.39 
TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 
        6.54         8.09         7.46         7.82         6.81         0.39 
TCGA-37-5819 TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 
        3.39        47.80        74.07        44.71        68.58        55.17 
TCGA-39-5024 TCGA-39-5027 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 
       70.03        60.76        24.33         1.94        27.35        36.39 
TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-39-5040 TCGA-43-2576 
       15.58        35.64        35.70        17.88        17.06        40.21 
TCGA-43-2578 TCGA-43-2581 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-5670 
       22.49        38.66        27.02        33.07        11.47        18.05 
TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 
       10.19         5.42         3.78         6.97         1.58        66.51 
TCGA-43-8115 TCGA-43-8116 TCGA-43-8118 TCGA-43-A474 TCGA-43-A56V TCGA-46-3768 
        6.64         6.35         2.93        11.61         5.06         9.96 
TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 
       10.65        13.87         0.39         0.39        29.95        17.79 
TCGA-52-7809 TCGA-52-7810 TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 
        5.42        30.31         8.75        27.45        28.93         0.10 
TCGA-56-5898 TCGA-56-6545 TCGA-56-6546 TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 
       18.25         2.04         1.02         0.43         0.99         1.45 
TCGA-56-7580 TCGA-56-7582 TCGA-56-7730 TCGA-56-7822 TCGA-56-8503 TCGA-56-8622 
        1.32         0.85         0.20         0.03         1.35         1.78 
TCGA-56-8624 TCGA-56-8625 TCGA-56-8626 TCGA-56-8628 TCGA-56-8629 TCGA-56-A49D 
        1.18         2.07         0.56         0.53         1.12         0.99 
TCGA-56-A4BX TCGA-56-A4ZJ TCGA-56-A4ZK TCGA-56-A5DS TCGA-58-8386 TCGA-58-8387 
        1.51         1.02         0.13         0.26         0.03        13.25 
TCGA-58-8388 TCGA-58-8390 TCGA-58-8391 TCGA-58-8392 TCGA-58-8393 TCGA-58-A46J 
       12.43        29.95        71.24        16.47        34.78        64.87 
TCGA-58-A46K TCGA-58-A46L TCGA-58-A46M TCGA-58-A46N TCGA-60-2695 TCGA-60-2696 
       34.36        36.59        23.24        17.72        21.07         3.58 
TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 TCGA-60-2707 TCGA-60-2708 
       12.23        10.22        96.82        37.94        21.70        80.42 
TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 
       49.48        66.51        41.39         9.01        56.91        35.34 
TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 
       48.49        42.61         3.16        32.28        29.85        35.90 
TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 
       26.79        11.77        16.96        43.10         2.01        21.07 
TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 TCGA-66-2757 TCGA-66-2758 
        0.99         1.02         2.01         0.92         0.99        20.98 
TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2768 TCGA-66-2769 
       25.02         0.99         2.01         1.02         2.01         7.07 
TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 
       19.00         3.02         2.01        19.00        12.03         3.98 
TCGA-66-2782 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 
       12.00         1.94        25.97        40.01        22.98         4.04 
TCGA-66-2790 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 
       22.98         5.03        30.02        10.06        54.08         4.01 
TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 TCGA-68-7757 TCGA-68-8250 TCGA-68-8251 
       49.05         2.73         6.64         6.94         8.02         3.12 
TCGA-77-6842 TCGA-77-6843 TCGA-77-6845 TCGA-77-7138 TCGA-77-7140 TCGA-77-7141 
       29.56        73.08        23.28        11.18        20.78         0.49 
TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 
       42.25        70.09       106.95         0.16        46.78        15.75 
TCGA-77-8007 TCGA-77-8008 TCGA-77-8009 TCGA-77-8128 TCGA-77-8131 TCGA-77-8133 
        6.51        86.76        53.95        37.81        12.59        53.92 
TCGA-77-8136 TCGA-77-8138 TCGA-77-8140 TCGA-77-8144 TCGA-77-8145 TCGA-77-8148 
       39.09        17.69        11.54        27.39         6.97         9.63 
TCGA-77-8150 TCGA-77-8153 TCGA-77-8154 TCGA-77-8156 TCGA-77-A5FZ TCGA-77-A5G3 
       54.41        55.33        35.90         0.33       126.18       117.57 
TCGA-77-A5GB TCGA-77-A5GH TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 TCGA-85-7697 
       30.81        23.44         0.79         1.12         0.59         0.33 
TCGA-85-7698 TCGA-85-7699 TCGA-85-7843 TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 
        1.61         0.03         1.15         0.85         1.97         0.53 
TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 TCGA-85-8276 TCGA-85-8287 TCGA-85-8288 
       16.77        14.07         1.18         0.43         1.45         1.78 
TCGA-85-8350 TCGA-85-8351 TCGA-85-8352 TCGA-85-8354 TCGA-85-8355 TCGA-85-8479 
        1.97         1.81         2.20         2.01         0.66         0.72 
TCGA-85-8481 TCGA-85-8580 TCGA-85-8582 TCGA-85-8664 TCGA-85-8666 TCGA-85-A4CL 
        0.66        14.60        13.91         0.10        15.58         0.46 
TCGA-85-A4QR TCGA-85-A50M TCGA-85-A513 TCGA-85-A53L TCGA-90-6837 TCGA-90-7766 
        0.82         0.62         0.79         0.43        24.89         9.50 
TCGA-90-7767 TCGA-90-7769 TCGA-90-7964 TCGA-90-A4ED TCGA-90-A4EE TCGA-92-7341 
        2.93        11.77        14.07         8.02        10.88         3.48 
TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 TCGA-94-7943 
        4.01         5.26         2.27         2.86         0.16        11.70 
TCGA-96-7544 TCGA-96-8169 TCGA-96-8170 TCGA-96-A4JK TCGA-96-A4JL TCGA-98-7454 
       39.88         6.18         6.90         8.98         6.02         8.42 
TCGA-98-8020 TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 TCGA-J1-A4AH TCGA-L3-A4E7 
        2.73        13.58         7.33        10.13         7.30         1.15 
TCGA-L3-A524 TCGA-LA-A446 TCGA-MF-A522 TCGA-NC-A5HE 
       14.76         1.18         3.02        56.61 

  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
              0.36               0.03 
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
            173.79             126.18 
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
            23.010             13.185 
[1] "0.4 - 173.8 (23.0)" "0.0 - 126.2 (13.2)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
  "21Q GAIN MUTATED"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-22-A5C4         TCGA-33-4532         TCGA-33-4533 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-33-4538         TCGA-33-4547         TCGA-33-4566 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-33-4582         TCGA-33-4583         TCGA-33-4586 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-33-4587         TCGA-33-4589         TCGA-33-6737 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-33-6738         TCGA-34-2596         TCGA-34-2600 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-34-2604         TCGA-34-2605         TCGA-34-2608 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-34-2609         TCGA-34-5231         TCGA-34-5232 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-34-5234         TCGA-34-5236         TCGA-34-5239 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-34-5240         TCGA-34-5241         TCGA-34-5927 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-34-5928         TCGA-34-5929         TCGA-34-7107 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-3792 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4132 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-37-4133         TCGA-37-4135         TCGA-37-4141 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-37-5819         TCGA-39-5011         TCGA-39-5016 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-39-5019         TCGA-39-5021         TCGA-39-5022 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-39-5024         TCGA-39-5027         TCGA-39-5028 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-39-5029         TCGA-39-5030         TCGA-39-5031 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-39-5034         TCGA-39-5035         TCGA-39-5036 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-39-5037         TCGA-39-5039         TCGA-39-5040 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED"   "21Q GAIN MUTATED" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-43-8118 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-43-A474         TCGA-43-A475         TCGA-43-A56V 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-46-3768         TCGA-46-6025         TCGA-46-6026 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-51-4079         TCGA-51-4080         TCGA-51-4081 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-52-7622         TCGA-52-7809         TCGA-52-7810 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-52-7811         TCGA-52-7812         TCGA-56-1622 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-56-5897         TCGA-56-5898         TCGA-56-6545 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-56-6546         TCGA-56-7221         TCGA-56-7222 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-56-7223         TCGA-56-7579         TCGA-56-7580 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-56-7582         TCGA-56-7730         TCGA-56-7822 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-56-8503         TCGA-56-8504         TCGA-56-8622 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-56-8624         TCGA-56-8625         TCGA-56-8626 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-56-8628         TCGA-56-8629         TCGA-56-A49D 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-56-A4BX         TCGA-56-A4BY         TCGA-56-A4ZJ 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-56-A4ZK         TCGA-56-A5DS         TCGA-58-8386 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-58-8387         TCGA-58-8388         TCGA-58-8390 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-58-8391         TCGA-58-8392         TCGA-58-8393 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-58-A46J         TCGA-58-A46K         TCGA-58-A46L 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-58-A46M         TCGA-58-A46N         TCGA-60-2695 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-60-2696         TCGA-60-2697         TCGA-60-2698 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-60-2703         TCGA-60-2704         TCGA-60-2706 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2756 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-66-2770         TCGA-66-2771         TCGA-66-2773 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-66-2785         TCGA-66-2786         TCGA-66-2787 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-68-7755         TCGA-68-7756         TCGA-68-7757 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-68-8250         TCGA-68-8251         TCGA-77-6842 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
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        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-96-8169         TCGA-96-8170         TCGA-96-A4JK 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-96-A4JL         TCGA-98-7454         TCGA-98-8020 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-LA-A446         TCGA-MF-A522         TCGA-NC-A5HE 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
  "21Q GAIN MUTATED"   "21Q GAIN MUTATED" 
[1] "hr=" "1.7"
D38V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  21Q GAIN MUTATED         1        3       11        0         2        13
  21Q GAIN WILD-TYPE       0       65      122        1        48        58
                    vv
clus                 STAGE IIIA STAGE IIIB STAGE IV
  21Q GAIN MUTATED           11          4        0
  21Q GAIN WILD-TYPE         43         16        5
D38V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  21Q GAIN MUTATED     4  29  10   3
  21Q GAIN WILD-TYPE  89 221  34  16
D38V4, multiclass
    clus
vv   21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  T1                4                 89
  T2               29                221
  T3               10                 34
  T4                3                 16
                    vv
clus                  N0  N1  N2  N3
  21Q GAIN MUTATED    22  19   3   2
  21Q GAIN WILD-TYPE 231  90  31   3
D38V5, multiclass
    clus
vv   21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  N0               22                231
  N1               19                 90
  N2                3                 31
  N3                2                  3
                    vv
clus                  M0  M1  MX
  21Q GAIN MUTATED    38   0   6
  21Q GAIN WILD-TYPE 310   5  41
D38V6, multiclass
    clus
vv   21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  M0               38                310
  M1                0                  5
  MX                6                 41
D38V7, binary
                    cls
clus                   0   1
  21Q GAIN MUTATED     8  38
  21Q GAIN WILD-TYPE  93 267
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  21Q GAIN MUTATED      8   38
  21Q GAIN WILD-TYPE   93  267
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  FEMALE                8                 93
  MALE                 38                267
D38V8, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  21Q GAIN MUTATED                                       3
  21Q GAIN WILD-TYPE                                     9
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  21Q GAIN MUTATED                                        0
  21Q GAIN WILD-TYPE                                      6
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  21Q GAIN MUTATED                                         1
  21Q GAIN WILD-TYPE                                       0
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  21Q GAIN MUTATED                                                            42
  21Q GAIN WILD-TYPE                                                         345
D38V9, multiclass
                                                             clus
vv                                                            21Q GAIN MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      3
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                     0
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               42
                                                             clus
vv                                                            21Q GAIN WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                        9
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                       6
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                      0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                345
D38V10, binary
                    cls
clus                   0   1
  21Q GAIN MUTATED     3  43
  21Q GAIN WILD-TYPE   9 351
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  21Q GAIN MUTATED      3   43
  21Q GAIN WILD-TYPE    9  351
     clus
vv    21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  NO                 3                  9
  YES               43                351
D38V11, continuous
D38V12, continuous
                    vv
clus                  R0  R1  R2  RX
  21Q GAIN MUTATED    33   2   1   5
  21Q GAIN WILD-TYPE 297   6   3  13
D38V13, multiclass
    clus
vv   21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  R0               33                297
  R1                2                  6
  R2                1                  3
  RX                5                 13

Clustering(39) Variable = 22Q GAIN MUTATION ANALYSIS
D39V1, survival
                    sevent
clus2                  0   1
  22Q GAIN MUTATED   107  62
  22Q GAIN WILD-TYPE 132  76
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
               169                208 
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                62                 76 
$`22Q GAIN MUTATED`
TCGA-18-3408 TCGA-18-3409 TCGA-18-3411 TCGA-18-3412 TCGA-18-3414 TCGA-21-1072 
       81.07        79.46        46.52        11.34        13.02        99.16 
TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 TCGA-21-1079 TCGA-21-1082 TCGA-21-1083 
       70.13        60.89        34.78        31.69       119.80         8.78 
TCGA-21-5784 TCGA-21-5786 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 TCGA-22-4591 
       41.69        33.93         4.31         1.74        14.10        20.45 
TCGA-22-4593 TCGA-22-4595 TCGA-22-4601 TCGA-22-4604 TCGA-22-4605 TCGA-22-5477 
       35.08        24.13        34.75        13.12        32.02        44.22 
TCGA-22-5479 TCGA-22-5481 TCGA-22-5482 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 
       54.28        79.20        11.74        56.32        16.60         7.63 
TCGA-33-4586 TCGA-33-4589 TCGA-33-6738 TCGA-34-2596 TCGA-34-2600 TCGA-34-2605 
       14.07        10.98        26.99         2.63        61.61        28.96 
TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 
       32.84        31.23        50.24         9.04        23.24        12.00 
TCGA-34-5241 TCGA-37-4130 TCGA-37-4133 TCGA-37-4141 TCGA-39-5019 TCGA-39-5021 
       14.07         8.09         7.82         0.39        44.71        68.58 
TCGA-39-5034 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-3394 TCGA-43-3920 
       36.39        35.64        35.70        17.88        27.02        33.07 
TCGA-43-5668 TCGA-43-5670 TCGA-43-6647 TCGA-43-6770 TCGA-43-7657 TCGA-43-8118 
       11.47        18.05        24.89        10.19         1.58         2.93 
TCGA-43-A474 TCGA-43-A475 TCGA-43-A56V TCGA-46-3768 TCGA-46-6025 TCGA-52-7809 
       11.61         9.73         5.06         9.96        10.65         5.42 
TCGA-52-7810 TCGA-52-7811 TCGA-56-1622 TCGA-56-5897 TCGA-56-5898 TCGA-56-6545 
       30.31         8.75        28.93         0.10        18.25         2.04 
TCGA-56-7221 TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 TCGA-56-7730 TCGA-56-7822 
        0.99         1.45         1.32         0.85         0.20         0.03 
TCGA-56-8503 TCGA-56-8504 TCGA-56-8622 TCGA-56-8626 TCGA-56-8629 TCGA-56-A49D 
        1.35         5.82         1.78         0.56         1.12         0.99 
TCGA-56-A4BX TCGA-56-A4ZJ TCGA-56-A5DS TCGA-58-8386 TCGA-58-8387 TCGA-58-8390 
        1.51         1.02         0.26         0.03        13.25        29.95 
TCGA-58-A46M TCGA-58-A46N TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 
       23.24        17.72        96.82        37.94        92.71        21.70 
TCGA-60-2708 TCGA-60-2711 TCGA-60-2714 TCGA-60-2719 TCGA-60-2720 TCGA-60-2722 
       80.42        41.39        50.33        42.61         3.16        29.85 
TCGA-60-2723 TCGA-60-2725 TCGA-60-2726 TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 
       35.90        26.79        11.77        43.10         2.01        21.07 
TCGA-66-2755 TCGA-66-2758 TCGA-66-2763 TCGA-66-2769 TCGA-66-2773 TCGA-66-2777 
        0.92        20.98         0.99         7.07         3.02         2.01 
TCGA-66-2781 TCGA-66-2783 TCGA-66-2785 TCGA-66-2788 TCGA-66-2792 TCGA-66-2794 
        3.98        24.95         1.94        22.98        30.02        54.08 
TCGA-66-2800 TCGA-77-6842 TCGA-77-6845 TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 
       49.05        29.56        23.28        89.95        20.78         0.49 
TCGA-77-7338 TCGA-77-7463 TCGA-77-8007 TCGA-77-8008 TCGA-77-8128 TCGA-77-8130 
        0.16        46.78         6.51        86.76        37.81        82.92 
TCGA-77-8131 TCGA-77-8133 TCGA-77-8140 TCGA-77-8143 TCGA-77-8145 TCGA-77-8153 
       12.59        53.92        11.54        26.40         6.97        55.33 
TCGA-77-8156 TCGA-77-A5GB TCGA-77-A5GH TCGA-85-6561 TCGA-85-7696 TCGA-85-7698 
        0.33        30.81        23.44         0.79         0.59         1.61 
TCGA-85-8052 TCGA-85-8070 TCGA-85-8276 TCGA-85-8277 TCGA-85-8350 TCGA-85-8354 
        0.53        16.77         0.43         0.36         1.97         2.01 
TCGA-85-8481 TCGA-85-8580 TCGA-85-A4QR TCGA-85-A50M TCGA-90-7767 TCGA-90-7769 
        0.66        14.60         0.82         0.62         2.93        11.77 
TCGA-92-7341 TCGA-94-7033 TCGA-94-7943 TCGA-96-7545 TCGA-96-8169 TCGA-96-8170 
        3.48         2.86        11.70        44.15         6.18         6.90 
TCGA-96-A4JK TCGA-98-8020 TCGA-98-8022 TCGA-J1-A4AH TCGA-LA-A446 TCGA-NC-A5HG 
        8.98         2.73         7.33         7.30         1.18        50.86 
TCGA-NC-A5HI 
       37.32 

$`22Q GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3410 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 
       12.16         4.47         4.80        59.51        28.34        24.92 
TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 
        1.61        43.76         6.15         2.79        90.51         3.02 
TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 TCGA-21-1078 TCGA-21-1080 TCGA-21-1081 
       27.16       119.54        46.88        15.55       122.43         9.30 
TCGA-21-5782 TCGA-21-5783 TCGA-21-5787 TCGA-21-A5DI TCGA-22-0940 TCGA-22-0944 
       31.63        88.08        10.82        32.19        19.99         7.33 
TCGA-22-1000 TCGA-22-1005 TCGA-22-1016 TCGA-22-1017 TCGA-22-4594 TCGA-22-4596 
       14.93        64.21        27.02        48.82        48.33         0.56 
TCGA-22-4599 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 
       38.17        19.30         9.53        11.77        31.73        64.90 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5478 TCGA-22-5480 TCGA-22-5483 TCGA-22-5485 
       63.52        14.60         0.79        71.34        18.84        30.08 
TCGA-22-5489 TCGA-22-A5C4 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 
       62.86         0.95       114.05        97.94        43.10       173.79 
TCGA-33-4582 TCGA-33-4583 TCGA-33-4587 TCGA-33-6737 TCGA-34-2604 TCGA-34-5232 
      103.53       141.34        54.44        19.76        31.50        67.79 
TCGA-34-5234 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 
       56.38        30.94        18.12         4.96         1.08         3.95 
TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 TCGA-37-4132 TCGA-37-4135 TCGA-37-5819 
        0.43         0.39         6.54         7.46         6.81         3.39 
TCGA-39-5011 TCGA-39-5016 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       47.80        74.07        55.17        70.03        60.76         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5040 TCGA-43-2576 
       24.33         1.94        27.35        15.58        17.06        40.21 
TCGA-43-2578 TCGA-43-2581 TCGA-43-6143 TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 
       22.49        38.66        12.36         5.42         3.78         6.97 
TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 
       66.51         6.64         6.35        13.87         0.39         0.39 
TCGA-51-4081 TCGA-52-7622 TCGA-52-7812 TCGA-56-6546 TCGA-56-7222 TCGA-56-7223 
       29.95        17.79        27.45         1.02         0.43         0.99 
TCGA-56-8624 TCGA-56-8625 TCGA-56-8628 TCGA-56-A4BY TCGA-56-A4ZK TCGA-58-8388 
        1.18         2.07         0.53         0.99         0.13        12.43 
TCGA-58-8391 TCGA-58-8392 TCGA-58-8393 TCGA-58-A46J TCGA-58-A46K TCGA-58-A46L 
       71.24        16.47        34.78        64.87        34.36        36.59 
TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2709 TCGA-60-2710 
       21.07         3.58        12.23        10.22        49.48        66.51 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2716 TCGA-60-2721 TCGA-60-2724 
        9.01        56.91        35.34        48.49        32.28        23.57 
TCGA-66-2727 TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 TCGA-66-2756 TCGA-66-2757 
       16.96         0.99         1.02         2.01         0.99         0.99 
TCGA-66-2759 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 
       25.02         2.01         1.02         2.01         2.01        23.01 
TCGA-66-2771 TCGA-66-2778 TCGA-66-2780 TCGA-66-2782 TCGA-66-2786 TCGA-66-2787 
       19.00        19.00        12.03        12.00        25.97        40.01 
TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 TCGA-66-2793 TCGA-66-2795 TCGA-68-7755 
        4.04        22.98         5.03        10.06         4.01         2.73 
TCGA-68-7756 TCGA-68-7757 TCGA-68-8250 TCGA-68-8251 TCGA-77-6843 TCGA-77-6844 
        6.64         6.94         8.02         3.12        73.08        75.09 
TCGA-77-7138 TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 TCGA-77-7465 TCGA-77-8009 
       11.18        42.25        70.09       106.95        15.75        53.95 
TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 TCGA-77-8144 TCGA-77-8148 TCGA-77-8150 
       39.09        17.69       104.09        27.39         9.63        54.41 
TCGA-77-8154 TCGA-77-A5FZ TCGA-77-A5G3 TCGA-85-6560 TCGA-85-6798 TCGA-85-7697 
       35.90       126.18       117.57         0.36         1.12         0.33 
TCGA-85-7699 TCGA-85-7843 TCGA-85-7844 TCGA-85-7950 TCGA-85-8048 TCGA-85-8049 
        0.03         1.15         1.25         1.97         0.85         1.97 
TCGA-85-8071 TCGA-85-8072 TCGA-85-8287 TCGA-85-8288 TCGA-85-8351 TCGA-85-8352 
       14.07         1.18         1.45         1.78         1.81         2.20 
TCGA-85-8353 TCGA-85-8355 TCGA-85-8479 TCGA-85-8582 TCGA-85-8664 TCGA-85-8666 
        1.78         0.66         0.72        13.91         0.10        15.58 
TCGA-85-A4CL TCGA-85-A513 TCGA-85-A53L TCGA-90-6837 TCGA-90-7766 TCGA-90-7964 
        0.46         0.79         0.43        24.89         9.50        14.07 
TCGA-90-A4ED TCGA-90-A4EE TCGA-92-7340 TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 
        8.02        10.88         2.70         4.01         5.26         2.27 
TCGA-94-7557 TCGA-96-7544 TCGA-96-A4JL TCGA-98-7454 TCGA-98-8021 TCGA-98-8023 
        0.16        39.88         6.02         8.42        13.58        10.13 
TCGA-L3-A4E7 TCGA-L3-A524 TCGA-MF-A522 TCGA-NC-A5HE 
        1.15        14.76         3.02        56.61 

  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
              0.03               0.03 
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
            119.80             173.79 
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
            13.250             13.725 
[1] "0.0 - 119.8 (13.2)" "0.0 - 173.8 (13.7)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
        TCGA-22-A5C4         TCGA-33-4532         TCGA-33-4533 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-33-4538         TCGA-33-4547         TCGA-33-4566 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-33-4582         TCGA-33-4583         TCGA-33-4586 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-33-4587         TCGA-33-4589         TCGA-33-6737 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-33-6738         TCGA-34-2596         TCGA-34-2600 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
        TCGA-34-2604         TCGA-34-2605         TCGA-34-2608 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
        TCGA-34-2609         TCGA-34-5231         TCGA-34-5232 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-34-5234         TCGA-34-5236         TCGA-34-5239 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
        TCGA-34-5240         TCGA-34-5241         TCGA-34-5927 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-34-5928         TCGA-34-5929         TCGA-34-7107 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-3792 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4132 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-37-4133         TCGA-37-4135         TCGA-37-4141 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-37-5819         TCGA-39-5011         TCGA-39-5016 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-39-5019         TCGA-39-5021         TCGA-39-5022 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-39-5024         TCGA-39-5027         TCGA-39-5028 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-39-5029         TCGA-39-5030         TCGA-39-5031 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-39-5034         TCGA-39-5035         TCGA-39-5036 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-39-5037         TCGA-39-5039         TCGA-39-5040 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-43-8118 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
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  "22Q GAIN MUTATED"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
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  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
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  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
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  "22Q GAIN MUTATED"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
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"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
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  "22Q GAIN MUTATED"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
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  "22Q GAIN MUTATED"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
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"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
        TCGA-56-A4BX         TCGA-56-A4BY         TCGA-56-A4ZJ 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-56-A4ZK         TCGA-56-A5DS         TCGA-58-8386 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
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  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-58-A46M         TCGA-58-A46N         TCGA-60-2695 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-60-2696         TCGA-60-2697         TCGA-60-2698 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-60-2703         TCGA-60-2704         TCGA-60-2706 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
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  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
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"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
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"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
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  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-66-2785         TCGA-66-2786         TCGA-66-2787 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-68-8250         TCGA-68-8251         TCGA-77-6842 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
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"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
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  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-77-7337         TCGA-77-7338         TCGA-77-7463 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
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"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
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"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
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  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-77-8138         TCGA-77-8139         TCGA-77-8140 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
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  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-77-8154         TCGA-77-8156         TCGA-77-A5FZ 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
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"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
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  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
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  "22Q GAIN MUTATED"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
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"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
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  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
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  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
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  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
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  "22Q GAIN MUTATED"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
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"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
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  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
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  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
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"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
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"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
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  "22Q GAIN MUTATED"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
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"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
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  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
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  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
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  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-39-5019         TCGA-39-5021         TCGA-39-5022 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-39-5024         TCGA-39-5027         TCGA-39-5028 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
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  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
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  "22Q GAIN MUTATED"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
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  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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  "22Q GAIN MUTATED"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
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  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
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  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
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  "22Q GAIN MUTATED"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
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"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
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  "22Q GAIN MUTATED"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
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  "22Q GAIN MUTATED"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
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  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
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  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
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"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
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"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
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  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-56-5897         TCGA-56-5898         TCGA-56-6545 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
        TCGA-56-6546         TCGA-56-7221         TCGA-56-7222 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-56-7223         TCGA-56-7579         TCGA-56-7580 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
        TCGA-56-7582         TCGA-56-7730         TCGA-56-7822 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
        TCGA-56-8503         TCGA-56-8504         TCGA-56-8622 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
        TCGA-56-8624         TCGA-56-8625         TCGA-56-8626 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-56-8628         TCGA-56-8629         TCGA-56-A49D 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
        TCGA-56-A4BX         TCGA-56-A4BY         TCGA-56-A4ZJ 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-56-A4ZK         TCGA-56-A5DS         TCGA-58-8386 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
        TCGA-58-8387         TCGA-58-8388         TCGA-58-8390 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-58-8391         TCGA-58-8392         TCGA-58-8393 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-58-A46J         TCGA-58-A46K         TCGA-58-A46L 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-58-A46M         TCGA-58-A46N         TCGA-60-2695 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-60-2696         TCGA-60-2697         TCGA-60-2698 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-60-2703         TCGA-60-2704         TCGA-60-2706 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2756 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-66-2770         TCGA-66-2771         TCGA-66-2773 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-66-2785         TCGA-66-2786         TCGA-66-2787 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-68-7755         TCGA-68-7756         TCGA-68-7757 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-68-8250         TCGA-68-8251         TCGA-77-6842 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-77-6843         TCGA-77-6844         TCGA-77-6845 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-77-7138         TCGA-77-7139         TCGA-77-7140 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
        TCGA-77-7141         TCGA-77-7142         TCGA-77-7335 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-77-7337         TCGA-77-7338         TCGA-77-7463 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
        TCGA-77-7465         TCGA-77-8007         TCGA-77-8008 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
        TCGA-77-8009         TCGA-77-8128         TCGA-77-8130 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
        TCGA-77-8131         TCGA-77-8133         TCGA-77-8136 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-77-8138         TCGA-77-8139         TCGA-77-8140 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-77-8143         TCGA-77-8144         TCGA-77-8145 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-77-8148         TCGA-77-8150         TCGA-77-8153 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-77-8154         TCGA-77-8156         TCGA-77-A5FZ 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-77-A5G3         TCGA-77-A5GB         TCGA-77-A5GH 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-96-8169         TCGA-96-8170         TCGA-96-A4JK 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
        TCGA-96-A4JL         TCGA-98-7454         TCGA-98-8020 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-LA-A446         TCGA-MF-A522         TCGA-NC-A5HE 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
[1] "hr=" "1.1"
D39V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  22Q GAIN MUTATED         0       23       68        0        23        37
  22Q GAIN WILD-TYPE       1       45       65        1        27        34
                    vv
clus                 STAGE IIIA STAGE IIIB STAGE IV
  22Q GAIN MUTATED           19          8        3
  22Q GAIN WILD-TYPE         35         12        2
D39V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  22Q GAIN MUTATED    35 121  18   9
  22Q GAIN WILD-TYPE  58 129  26  10
D39V4, multiclass
    clus
vv   22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  T1               35                 58
  T2              121                129
  T3               18                 26
  T4                9                 10
                    vv
clus                  N0  N1  N2  N3
  22Q GAIN MUTATED   119  46  13   1
  22Q GAIN WILD-TYPE 134  63  21   4
D39V5, multiclass
    clus
vv   22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  N0              119                134
  N1               46                 63
  N2               13                 21
  N3                1                  4
                    vv
clus                  M0  M1  MX
  22Q GAIN MUTATED   157   3  21
  22Q GAIN WILD-TYPE 191   2  26
D39V6, multiclass
    clus
vv   22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  M0              157                191
  M1                3                  2
  MX               21                 26
D39V7, binary
                    cls
clus                   0   1
  22Q GAIN MUTATED    44 139
  22Q GAIN WILD-TYPE  57 166
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  22Q GAIN MUTATED     44  139
  22Q GAIN WILD-TYPE   57  166
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  FEMALE               44                 57
  MALE                139                166
D39V8, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  22Q GAIN MUTATED                                       5
  22Q GAIN WILD-TYPE                                     7
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  22Q GAIN MUTATED                                        1
  22Q GAIN WILD-TYPE                                      5
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  22Q GAIN MUTATED                                         0
  22Q GAIN WILD-TYPE                                       1
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  22Q GAIN MUTATED                                                           177
  22Q GAIN WILD-TYPE                                                         210
D39V9, multiclass
                                                             clus
vv                                                            22Q GAIN MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      5
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                     1
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                    0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              177
                                                             clus
vv                                                            22Q GAIN WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                        7
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                       5
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                      1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                210
D39V10, binary
                    cls
clus                   0   1
  22Q GAIN MUTATED     4 179
  22Q GAIN WILD-TYPE   8 215
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  22Q GAIN MUTATED      4  179
  22Q GAIN WILD-TYPE    8  215
     clus
vv    22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  NO                 4                  8
  YES              179                215
D39V11, continuous
D39V12, continuous
                    vv
clus                  R0  R1  R2  RX
  22Q GAIN MUTATED   153   4   1   3
  22Q GAIN WILD-TYPE 177   4   3  15
D39V13, multiclass
    clus
vv   22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  R0              153                177
  R1                4                  4
  R2                1                  3
  RX                3                 15

Clustering(40) Variable = XQ GAIN MUTATION ANALYSIS
D40V1, survival
                   sevent
clus2                 0   1
  XQ GAIN MUTATED    40  20
  XQ GAIN WILD-TYPE 199 118
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
               60               317 
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
               20               118 
$`XQ GAIN MUTATED`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3417 TCGA-18-3421 TCGA-18-4083 TCGA-21-1081 
       12.16         4.47        24.92        43.76         6.15         9.30 
TCGA-21-5786 TCGA-22-1012 TCGA-22-4593 TCGA-22-4595 TCGA-22-5483 TCGA-33-4532 
       33.93        14.10        35.08        24.13        18.84         7.63 
TCGA-33-4566 TCGA-34-2596 TCGA-34-5240 TCGA-34-5927 TCGA-34-5928 TCGA-37-5819 
      173.79         2.63        12.00        30.94        18.12         3.39 
TCGA-39-5019 TCGA-43-3920 TCGA-43-5670 TCGA-43-7657 TCGA-43-A475 TCGA-51-4079 
       44.71        33.07        18.05         1.58         9.73         0.39 
TCGA-56-7223 TCGA-56-7730 TCGA-56-8504 TCGA-56-8624 TCGA-56-8629 TCGA-58-8386 
        0.99         0.20         5.82         1.18         1.12         0.03 
TCGA-58-A46M TCGA-58-A46N TCGA-60-2695 TCGA-60-2703 TCGA-60-2711 TCGA-60-2719 
       23.24        17.72        21.07        96.82        41.39        42.61 
TCGA-60-2724 TCGA-66-2756 TCGA-66-2758 TCGA-66-2766 TCGA-66-2769 TCGA-66-2781 
       23.57         0.99        20.98         1.02         7.07         3.98 
TCGA-66-2792 TCGA-66-2793 TCGA-77-6842 TCGA-77-7138 TCGA-77-7140 TCGA-77-7335 
       30.02        10.06        29.56        11.18        20.78        70.09 
TCGA-77-8009 TCGA-77-8156 TCGA-85-6561 TCGA-85-8070 TCGA-85-8072 TCGA-85-8350 
       53.95         0.33         0.79        16.77         1.18         1.97 
TCGA-85-8354 TCGA-85-A50M TCGA-92-7341 TCGA-94-7557 TCGA-96-A4JK TCGA-J1-A4AH 
        2.01         0.62         3.48         0.16         8.98         7.30 

$`XQ GAIN WILD-TYPE`
TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 TCGA-18-3414 
       81.07        79.46         4.80        46.52        11.34        13.02 
TCGA-18-3415 TCGA-18-3416 TCGA-18-3419 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 
       59.51        28.34         1.61         2.79        90.51         3.02 
TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 
       27.16       119.54        46.88        99.16        70.13        60.89 
TCGA-21-1077 TCGA-21-1078 TCGA-21-1079 TCGA-21-1080 TCGA-21-1082 TCGA-21-1083 
       34.78        15.55        31.69       122.43       119.80         8.78 
TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 TCGA-21-5787 TCGA-21-A5DI TCGA-22-0940 
       31.63        88.08        41.69        10.82        32.19        19.99 
TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 TCGA-22-1016 
        7.33        14.93         4.31        64.21         1.74        27.02 
TCGA-22-1017 TCGA-22-4591 TCGA-22-4594 TCGA-22-4596 TCGA-22-4599 TCGA-22-4601 
       48.82        20.45        48.33         0.56        38.17        34.75 
TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 
       13.12        32.02        19.30         9.53        11.77        31.73 
TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 
       64.90        63.52        14.60        44.22         0.79        54.28 
TCGA-22-5480 TCGA-22-5481 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 
       71.34        79.20        11.74        30.08        62.86        56.32 
TCGA-22-5492 TCGA-22-A5C4 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4582 
       16.60         0.95       114.05        97.94        43.10       103.53 
TCGA-33-4583 TCGA-33-4586 TCGA-33-4587 TCGA-33-4589 TCGA-33-6737 TCGA-33-6738 
      141.34        14.07        54.44        10.98        19.76        26.99 
TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 
       61.61        31.50        28.96        32.84        31.23        50.24 
TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5241 TCGA-34-5929 
       67.79        56.38         9.04        23.24        14.07         4.96 
TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 
        1.08         3.95         0.43         0.39         6.54         8.09 
TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-39-5011 TCGA-39-5016 
        7.46         7.82         6.81         0.39        47.80        74.07 
TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 
       68.58        55.17        70.03        60.76         1.71        24.33 
TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 
        1.94        27.35        36.39        15.58        35.64        35.70 
TCGA-39-5039 TCGA-39-5040 TCGA-43-2576 TCGA-43-2578 TCGA-43-2581 TCGA-43-3394 
       17.88        17.06        40.21        22.49        38.66        27.02 
TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 
       11.47        12.36        24.89        10.19         5.42         3.78 
TCGA-43-7656 TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 TCGA-43-8118 TCGA-43-A474 
        6.97        66.51         6.64         6.35         2.93        11.61 
TCGA-43-A56V TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4080 TCGA-51-4081 
        5.06         9.96        10.65        13.87         0.39        29.95 
TCGA-52-7622 TCGA-52-7809 TCGA-52-7810 TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 
       17.79         5.42        30.31         8.75        27.45        28.93 
TCGA-56-5897 TCGA-56-5898 TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 
        0.10        18.25         2.04         1.02         0.99         0.43 
TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 TCGA-56-7822 TCGA-56-8503 TCGA-56-8622 
        1.45         1.32         0.85         0.03         1.35         1.78 
TCGA-56-8625 TCGA-56-8626 TCGA-56-8628 TCGA-56-A49D TCGA-56-A4BX TCGA-56-A4BY 
        2.07         0.56         0.53         0.99         1.51         0.99 
TCGA-56-A4ZJ TCGA-56-A4ZK TCGA-56-A5DS TCGA-58-8387 TCGA-58-8388 TCGA-58-8390 
        1.02         0.13         0.26        13.25        12.43        29.95 
TCGA-58-8391 TCGA-58-8392 TCGA-58-8393 TCGA-58-A46J TCGA-58-A46K TCGA-58-A46L 
       71.24        16.47        34.78        64.87        34.36        36.59 
TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 
        3.58        12.23        10.22        37.94        92.71        21.70 
TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 
       80.42        49.48        66.51         9.01        56.91        50.33 
TCGA-60-2715 TCGA-60-2716 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 
       35.34        48.49         3.16        32.28        29.85        35.90 
TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 
       26.79        11.77        16.96        43.10         2.01        21.07 
TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 TCGA-66-2757 TCGA-66-2759 
        0.99         1.02         2.01         0.92         0.99        25.02 
TCGA-66-2763 TCGA-66-2765 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 
        0.99         2.01         2.01         2.01        23.01        19.00 
TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2782 TCGA-66-2783 
        3.02         2.01        19.00        12.03        12.00        24.95 
TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 
        1.94        25.97        40.01        22.98         4.04        22.98 
TCGA-66-2791 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 
        5.03        54.08         4.01        49.05         2.73         6.64 
TCGA-68-7757 TCGA-68-8250 TCGA-68-8251 TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 
        6.94         8.02         3.12        73.08        75.09        23.28 
TCGA-77-7139 TCGA-77-7141 TCGA-77-7142 TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 
       89.95         0.49        42.25       106.95         0.16        46.78 
TCGA-77-7465 TCGA-77-8007 TCGA-77-8008 TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 
       15.75         6.51        86.76        37.81        82.92        12.59 
TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 TCGA-77-8143 
       53.92        39.09        17.69       104.09        11.54        26.40 
TCGA-77-8144 TCGA-77-8145 TCGA-77-8148 TCGA-77-8150 TCGA-77-8153 TCGA-77-8154 
       27.39         6.97         9.63        54.41        55.33        35.90 
TCGA-77-A5FZ TCGA-77-A5G3 TCGA-77-A5GB TCGA-77-A5GH TCGA-85-6560 TCGA-85-6798 
      126.18       117.57        30.81        23.44         0.36         1.12 
TCGA-85-7696 TCGA-85-7697 TCGA-85-7698 TCGA-85-7699 TCGA-85-7843 TCGA-85-7844 
        0.59         0.33         1.61         0.03         1.15         1.25 
TCGA-85-7950 TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 TCGA-85-8071 TCGA-85-8276 
        1.97         0.85         1.97         0.53        14.07         0.43 
TCGA-85-8277 TCGA-85-8287 TCGA-85-8288 TCGA-85-8351 TCGA-85-8352 TCGA-85-8353 
        0.36         1.45         1.78         1.81         2.20         1.78 
TCGA-85-8355 TCGA-85-8479 TCGA-85-8481 TCGA-85-8580 TCGA-85-8582 TCGA-85-8664 
        0.66         0.72         0.66        14.60        13.91         0.10 
TCGA-85-8666 TCGA-85-A4CL TCGA-85-A4QR TCGA-85-A513 TCGA-85-A53L TCGA-90-6837 
       15.58         0.46         0.82         0.79         0.43        24.89 
TCGA-90-7766 TCGA-90-7767 TCGA-90-7769 TCGA-90-7964 TCGA-90-A4ED TCGA-90-A4EE 
        9.50         2.93        11.77        14.07         8.02        10.88 
TCGA-92-7340 TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 TCGA-94-7943 
        2.70         4.01         5.26         2.27         2.86        11.70 
TCGA-96-7544 TCGA-96-7545 TCGA-96-8169 TCGA-96-8170 TCGA-96-A4JL TCGA-98-7454 
       39.88        44.15         6.18         6.90         6.02         8.42 
TCGA-98-8020 TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 TCGA-L3-A4E7 TCGA-L3-A524 
        2.73        13.58         7.33        10.13         1.15        14.76 
TCGA-LA-A446 TCGA-MF-A522 TCGA-NC-A5HE TCGA-NC-A5HG TCGA-NC-A5HI 
        1.18         3.02        56.61        50.86        37.32 

  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
             0.03              0.03 
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
           173.79            141.34 
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
            10.62             14.07 
[1] "0.0 - 173.8 (10.6)" "0.0 - 141.3 (14.1)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
  "XQ GAIN MUTATED"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
  "XQ GAIN MUTATED"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED"   "XQ GAIN MUTATED" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56V        TCGA-46-3768        TCGA-46-6025 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-5898 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-56-7730        TCGA-56-7822        TCGA-56-8503        TCGA-56-8504 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-56-8622        TCGA-56-8624        TCGA-56-8625        TCGA-56-8626 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-56-A4BY        TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-58-8386        TCGA-58-8387        TCGA-58-8388        TCGA-58-8390 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-58-8391        TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-58-A46K        TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED"   "XQ GAIN MUTATED" 
       TCGA-60-2695        TCGA-60-2696        TCGA-60-2697        TCGA-60-2698 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-60-2703        TCGA-60-2704        TCGA-60-2706        TCGA-60-2707 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-60-2708        TCGA-60-2709        TCGA-60-2710        TCGA-60-2711 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-60-2712        TCGA-60-2713        TCGA-60-2714        TCGA-60-2715 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-60-2716        TCGA-60-2719        TCGA-60-2720        TCGA-60-2721 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-60-2722        TCGA-60-2723        TCGA-60-2724        TCGA-60-2725 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-60-2726        TCGA-66-2727        TCGA-66-2734        TCGA-66-2737 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2753        TCGA-66-2754 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-66-2755        TCGA-66-2756        TCGA-66-2757        TCGA-66-2758 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-66-2759        TCGA-66-2763        TCGA-66-2765        TCGA-66-2766 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-66-2767        TCGA-66-2768        TCGA-66-2769        TCGA-66-2770 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-66-2771        TCGA-66-2773        TCGA-66-2777        TCGA-66-2778 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-66-2780        TCGA-66-2781        TCGA-66-2782        TCGA-66-2783 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-66-2785        TCGA-66-2786        TCGA-66-2787        TCGA-66-2788 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-66-2789        TCGA-66-2790        TCGA-66-2791        TCGA-66-2792 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-66-2793        TCGA-66-2794        TCGA-66-2795        TCGA-66-2800 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-68-7755        TCGA-68-7756        TCGA-68-7757        TCGA-68-8250 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-68-8251        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8007 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-77-8008        TCGA-77-8009        TCGA-77-8128        TCGA-77-8130 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-77-8131        TCGA-77-8133        TCGA-77-8136        TCGA-77-8138 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8140        TCGA-77-8143        TCGA-77-8144 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-77-8145        TCGA-77-8148        TCGA-77-8150        TCGA-77-8153 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ        TCGA-77-A5G3 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6560        TCGA-85-6561 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-7950 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-85-8048        TCGA-85-8049        TCGA-85-8052        TCGA-85-8070 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-85-8071        TCGA-85-8072        TCGA-85-8276        TCGA-85-8277 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-85-8287        TCGA-85-8288        TCGA-85-8350        TCGA-85-8351 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-85-8352        TCGA-85-8353        TCGA-85-8354        TCGA-85-8355 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-85-8479        TCGA-85-8481        TCGA-85-8580        TCGA-85-8582 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-85-8664        TCGA-85-8666        TCGA-85-A4CL        TCGA-85-A4QR 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-85-A50M        TCGA-85-A513        TCGA-85-A53L        TCGA-90-6837 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-90-A4ED        TCGA-90-A4EE        TCGA-92-7340        TCGA-92-7341 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-92-8063        TCGA-92-8064        TCGA-92-8065        TCGA-94-7033 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-94-7557        TCGA-94-7943        TCGA-96-7544        TCGA-96-7545 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-96-8169        TCGA-96-8170        TCGA-96-A4JK        TCGA-96-A4JL 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-NC-A5HI 
"XQ GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
  "XQ GAIN MUTATED"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
  "XQ GAIN MUTATED"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED"   "XQ GAIN MUTATED" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56V        TCGA-46-3768        TCGA-46-6025 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-5898 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-56-7730        TCGA-56-7822        TCGA-56-8503        TCGA-56-8504 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-56-8622        TCGA-56-8624        TCGA-56-8625        TCGA-56-8626 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-56-A4BY        TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-58-8386        TCGA-58-8387        TCGA-58-8388        TCGA-58-8390 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-58-8391        TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-58-A46K        TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED"   "XQ GAIN MUTATED" 
       TCGA-60-2695        TCGA-60-2696        TCGA-60-2697        TCGA-60-2698 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-60-2703        TCGA-60-2704        TCGA-60-2706        TCGA-60-2707 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-60-2708        TCGA-60-2709        TCGA-60-2710        TCGA-60-2711 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-60-2712        TCGA-60-2713        TCGA-60-2714        TCGA-60-2715 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-60-2716        TCGA-60-2719        TCGA-60-2720        TCGA-60-2721 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-60-2722        TCGA-60-2723        TCGA-60-2724        TCGA-60-2725 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-60-2726        TCGA-66-2727        TCGA-66-2734        TCGA-66-2737 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2753        TCGA-66-2754 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-66-2755        TCGA-66-2756        TCGA-66-2757        TCGA-66-2758 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-66-2759        TCGA-66-2763        TCGA-66-2765        TCGA-66-2766 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-66-2767        TCGA-66-2768        TCGA-66-2769        TCGA-66-2770 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-66-2771        TCGA-66-2773        TCGA-66-2777        TCGA-66-2778 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-66-2780        TCGA-66-2781        TCGA-66-2782        TCGA-66-2783 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-66-2785        TCGA-66-2786        TCGA-66-2787        TCGA-66-2788 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-66-2789        TCGA-66-2790        TCGA-66-2791        TCGA-66-2792 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-66-2793        TCGA-66-2794        TCGA-66-2795        TCGA-66-2800 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-68-7755        TCGA-68-7756        TCGA-68-7757        TCGA-68-8250 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-68-8251        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8007 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-77-8008        TCGA-77-8009        TCGA-77-8128        TCGA-77-8130 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-77-8131        TCGA-77-8133        TCGA-77-8136        TCGA-77-8138 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8140        TCGA-77-8143        TCGA-77-8144 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-77-8145        TCGA-77-8148        TCGA-77-8150        TCGA-77-8153 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ        TCGA-77-A5G3 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6560        TCGA-85-6561 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-7950 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-85-8048        TCGA-85-8049        TCGA-85-8052        TCGA-85-8070 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-85-8071        TCGA-85-8072        TCGA-85-8276        TCGA-85-8277 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-85-8287        TCGA-85-8288        TCGA-85-8350        TCGA-85-8351 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-85-8352        TCGA-85-8353        TCGA-85-8354        TCGA-85-8355 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-85-8479        TCGA-85-8481        TCGA-85-8580        TCGA-85-8582 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-85-8664        TCGA-85-8666        TCGA-85-A4CL        TCGA-85-A4QR 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-85-A50M        TCGA-85-A513        TCGA-85-A53L        TCGA-90-6837 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-90-A4ED        TCGA-90-A4EE        TCGA-92-7340        TCGA-92-7341 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-92-8063        TCGA-92-8064        TCGA-92-8065        TCGA-94-7033 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-94-7557        TCGA-94-7943        TCGA-96-7544        TCGA-96-7545 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-96-8169        TCGA-96-8170        TCGA-96-A4JK        TCGA-96-A4JL 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-NC-A5HI 
"XQ GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
  "XQ GAIN MUTATED"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
  "XQ GAIN MUTATED"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED"   "XQ GAIN MUTATED" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56V        TCGA-46-3768        TCGA-46-6025 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-5898 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-56-7730        TCGA-56-7822        TCGA-56-8503        TCGA-56-8504 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-56-8622        TCGA-56-8624        TCGA-56-8625        TCGA-56-8626 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-56-A4BY        TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-58-8386        TCGA-58-8387        TCGA-58-8388        TCGA-58-8390 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-58-8391        TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-58-A46K        TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED"   "XQ GAIN MUTATED" 
       TCGA-60-2695        TCGA-60-2696        TCGA-60-2697        TCGA-60-2698 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-60-2703        TCGA-60-2704        TCGA-60-2706        TCGA-60-2707 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-60-2708        TCGA-60-2709        TCGA-60-2710        TCGA-60-2711 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-60-2712        TCGA-60-2713        TCGA-60-2714        TCGA-60-2715 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-60-2716        TCGA-60-2719        TCGA-60-2720        TCGA-60-2721 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-60-2722        TCGA-60-2723        TCGA-60-2724        TCGA-60-2725 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-60-2726        TCGA-66-2727        TCGA-66-2734        TCGA-66-2737 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2753        TCGA-66-2754 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-66-2755        TCGA-66-2756        TCGA-66-2757        TCGA-66-2758 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-66-2759        TCGA-66-2763        TCGA-66-2765        TCGA-66-2766 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-66-2767        TCGA-66-2768        TCGA-66-2769        TCGA-66-2770 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-66-2771        TCGA-66-2773        TCGA-66-2777        TCGA-66-2778 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-66-2780        TCGA-66-2781        TCGA-66-2782        TCGA-66-2783 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-66-2785        TCGA-66-2786        TCGA-66-2787        TCGA-66-2788 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-66-2789        TCGA-66-2790        TCGA-66-2791        TCGA-66-2792 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-66-2793        TCGA-66-2794        TCGA-66-2795        TCGA-66-2800 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-68-7755        TCGA-68-7756        TCGA-68-7757        TCGA-68-8250 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-68-8251        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8007 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-77-8008        TCGA-77-8009        TCGA-77-8128        TCGA-77-8130 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-77-8131        TCGA-77-8133        TCGA-77-8136        TCGA-77-8138 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8140        TCGA-77-8143        TCGA-77-8144 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-77-8145        TCGA-77-8148        TCGA-77-8150        TCGA-77-8153 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ        TCGA-77-A5G3 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6560        TCGA-85-6561 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-7950 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-85-8048        TCGA-85-8049        TCGA-85-8052        TCGA-85-8070 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-85-8071        TCGA-85-8072        TCGA-85-8276        TCGA-85-8277 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-85-8287        TCGA-85-8288        TCGA-85-8350        TCGA-85-8351 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-85-8352        TCGA-85-8353        TCGA-85-8354        TCGA-85-8355 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-85-8479        TCGA-85-8481        TCGA-85-8580        TCGA-85-8582 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-85-8664        TCGA-85-8666        TCGA-85-A4CL        TCGA-85-A4QR 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-85-A50M        TCGA-85-A513        TCGA-85-A53L        TCGA-90-6837 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-90-A4ED        TCGA-90-A4EE        TCGA-92-7340        TCGA-92-7341 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-92-8063        TCGA-92-8064        TCGA-92-8065        TCGA-94-7033 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-94-7557        TCGA-94-7943        TCGA-96-7544        TCGA-96-7545 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-96-8169        TCGA-96-8170        TCGA-96-A4JK        TCGA-96-A4JL 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-NC-A5HI 
"XQ GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D40V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  XQ GAIN MUTATED         0        6       22        0        11        13
  XQ GAIN WILD-TYPE       1       62      111        1        39        58
                   vv
clus                STAGE IIIA STAGE IIIB STAGE IV
  XQ GAIN MUTATED            5          4        2
  XQ GAIN WILD-TYPE         49         16        3
D40V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  XQ GAIN MUTATED     8  44   7   4
  XQ GAIN WILD-TYPE  85 206  37  15
D40V4, multiclass
    clus
vv   XQ GAIN MUTATED XQ GAIN WILD-TYPE
  T1               8                85
  T2              44               206
  T3               7                37
  T4               4                15
                   vv
clus                 N0  N1  N2  N3
  XQ GAIN MUTATED    40  18   4   0
  XQ GAIN WILD-TYPE 213  91  30   5
D40V5, multiclass
    clus
vv   XQ GAIN MUTATED XQ GAIN WILD-TYPE
  N0              40               213
  N1              18                91
  N2               4                30
  N3               0                 5
                   vv
clus                 M0  M1  MX
  XQ GAIN MUTATED    52   2   7
  XQ GAIN WILD-TYPE 296   3  40
D40V6, multiclass
    clus
vv   XQ GAIN MUTATED XQ GAIN WILD-TYPE
  M0              52               296
  M1               2                 3
  MX               7                40
D40V7, binary
                   cls
clus                  0   1
  XQ GAIN MUTATED    13  50
  XQ GAIN WILD-TYPE  88 255
[1] "tbl2"
                   cls
clus                [,1] [,2]
  XQ GAIN MUTATED     13   50
  XQ GAIN WILD-TYPE   88  255
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  FEMALE              13                88
  MALE                50               255
D40V8, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  XQ GAIN MUTATED                                       3
  XQ GAIN WILD-TYPE                                     9
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  XQ GAIN MUTATED                                        1
  XQ GAIN WILD-TYPE                                      5
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  XQ GAIN MUTATED                                         0
  XQ GAIN WILD-TYPE                                       1
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  XQ GAIN MUTATED                                                            59
  XQ GAIN WILD-TYPE                                                         328
D40V9, multiclass
                                                             clus
vv                                                            XQ GAIN MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     3
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                    1
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              59
                                                             clus
vv                                                            XQ GAIN WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       9
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                      5
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               328
D40V10, binary
                   cls
clus                  0   1
  XQ GAIN MUTATED     1  62
  XQ GAIN WILD-TYPE  11 332
[1] "tbl2"
                   cls
clus                [,1] [,2]
  XQ GAIN MUTATED      1   62
  XQ GAIN WILD-TYPE   11  332
     clus
vv    XQ GAIN MUTATED XQ GAIN WILD-TYPE
  NO                1                11
  YES              62               332
D40V11, continuous
D40V12, continuous
                   vv
clus                 R0  R1  R2  RX
  XQ GAIN MUTATED    52   2   0   1
  XQ GAIN WILD-TYPE 278   6   4  17
D40V13, multiclass
    clus
vv   XQ GAIN MUTATED XQ GAIN WILD-TYPE
  R0              52               278
  R1               2                 6
  R2               0                 4
  RX               1                17

Clustering(41) Variable = 1P LOSS MUTATION ANALYSIS
D41V1, survival
                   sevent
clus2                 0   1
  1P LOSS MUTATED    74  39
  1P LOSS WILD-TYPE 165  99
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
              113               264 
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
               39                99 
$`1P LOSS MUTATED`
TCGA-18-3406 TCGA-18-3408 TCGA-18-3415 TCGA-18-5592 TCGA-21-1071 TCGA-21-1072 
       12.16        81.07        59.51         3.02        46.88        99.16 
TCGA-21-1075 TCGA-21-1077 TCGA-21-5786 TCGA-22-0940 TCGA-22-0944 TCGA-22-1012 
       70.13        34.78        33.93        19.99         7.33        14.10 
TCGA-22-1017 TCGA-22-4593 TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 TCGA-22-4604 
       48.82        35.08        24.13         0.56        38.17        13.12 
TCGA-22-4609 TCGA-22-5471 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5479 
        9.53        31.73        63.52        14.60        44.22        54.28 
TCGA-33-4538 TCGA-33-4583 TCGA-33-4586 TCGA-34-2596 TCGA-34-2600 TCGA-34-2605 
       97.94       141.34        14.07         2.63        61.61        28.96 
TCGA-37-4129 TCGA-37-5819 TCGA-39-5016 TCGA-39-5027 TCGA-39-5029 TCGA-39-5034 
        6.54         3.39        74.07        60.76        24.33        36.39 
TCGA-43-2581 TCGA-43-3394 TCGA-43-7657 TCGA-43-A474 TCGA-43-A56V TCGA-46-3768 
       38.66        27.02         1.58        11.61         5.06         9.96 
TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 TCGA-52-7811 
       13.87         0.39         0.39        29.95        17.79         8.75 
TCGA-56-1622 TCGA-56-5898 TCGA-56-6545 TCGA-56-7223 TCGA-56-7580 TCGA-56-7730 
       28.93        18.25         2.04         0.99         1.32         0.20 
TCGA-56-7822 TCGA-56-A49D TCGA-56-A4BX TCGA-58-8392 TCGA-58-8393 TCGA-58-A46L 
        0.03         0.99         1.51        16.47        34.78        36.59 
TCGA-58-A46M TCGA-60-2698 TCGA-60-2706 TCGA-60-2707 TCGA-60-2714 TCGA-66-2737 
       23.24        10.22        92.71        21.70        50.33         2.01 
TCGA-66-2758 TCGA-66-2767 TCGA-66-2770 TCGA-66-2773 TCGA-66-2777 TCGA-66-2781 
       20.98         2.01        23.01         3.02         2.01         3.98 
TCGA-66-2787 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 
       40.01         5.03        30.02        10.06        54.08         4.01 
TCGA-66-2800 TCGA-68-7755 TCGA-68-7757 TCGA-77-7139 TCGA-77-7337 TCGA-77-7465 
       49.05         2.73         6.94        89.95       106.95        15.75 
TCGA-77-8009 TCGA-77-8128 TCGA-77-8133 TCGA-77-8148 TCGA-77-8150 TCGA-77-A5G3 
       53.95        37.81        53.92         9.63        54.41       117.57 
TCGA-85-6561 TCGA-85-7696 TCGA-85-7698 TCGA-85-7843 TCGA-85-8049 TCGA-85-8277 
        0.79         0.59         1.61         1.15         1.97         0.36 
TCGA-85-8287 TCGA-85-8352 TCGA-85-8353 TCGA-85-8580 TCGA-85-A53L TCGA-90-A4EE 
        1.45         2.20         1.78        14.60         0.43        10.88 
TCGA-92-7341 TCGA-94-7943 TCGA-96-7544 TCGA-96-7545 TCGA-96-A4JK TCGA-98-8021 
        3.48        11.70        39.88        44.15         8.98        13.58 
TCGA-98-8023 TCGA-L3-A524 TCGA-LA-A446 TCGA-MF-A522 TCGA-NC-A5HE 
       10.13        14.76         1.18         3.02        56.61 

$`1P LOSS WILD-TYPE`
TCGA-18-3407 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 TCGA-18-3414 
        4.47        79.46         4.80        46.52        11.34        13.02 
TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 
       28.34        24.92         1.61        43.76         6.15         2.79 
TCGA-18-4721 TCGA-18-5595 TCGA-21-1070 TCGA-21-1076 TCGA-21-1078 TCGA-21-1079 
       90.51        27.16       119.54        60.89        15.55        31.69 
TCGA-21-1080 TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 
      122.43         9.30       119.80         8.78        31.63        88.08 
TCGA-21-5784 TCGA-21-5787 TCGA-21-A5DI TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 
       41.69        10.82        32.19        14.93         4.31        64.21 
TCGA-22-1011 TCGA-22-1016 TCGA-22-4591 TCGA-22-4594 TCGA-22-4601 TCGA-22-4605 
        1.74        27.02        20.45        48.33        34.75        32.02 
TCGA-22-4607 TCGA-22-4613 TCGA-22-5472 TCGA-22-5478 TCGA-22-5480 TCGA-22-5481 
       19.30        11.77        64.90         0.79        71.34        79.20 
TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 
       11.74        18.84        30.08        62.86        56.32        16.60 
TCGA-22-A5C4 TCGA-33-4532 TCGA-33-4533 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 
        0.95         7.63       114.05        43.10       173.79       103.53 
TCGA-33-4587 TCGA-33-4589 TCGA-33-6737 TCGA-33-6738 TCGA-34-2604 TCGA-34-2608 
       54.44        10.98        19.76        26.99        31.50        32.84 
TCGA-34-2609 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 
       31.23        50.24        67.79        56.38         9.04        23.24 
TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-34-7107 
       12.00        14.07        30.94        18.12         4.96         1.08 
TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 
        3.95         0.43         0.39         8.09         7.46         7.82 
TCGA-37-4135 TCGA-37-4141 TCGA-39-5011 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 
        6.81         0.39        47.80        44.71        68.58        55.17 
TCGA-39-5024 TCGA-39-5028 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 
       70.03         1.71         1.94        27.35        15.58        35.64 
TCGA-39-5037 TCGA-39-5039 TCGA-39-5040 TCGA-43-2576 TCGA-43-2578 TCGA-43-3920 
       35.70        17.88        17.06        40.21        22.49        33.07 
TCGA-43-5668 TCGA-43-5670 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 
       11.47        18.05        12.36        24.89        10.19         5.42 
TCGA-43-6773 TCGA-43-7656 TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 TCGA-43-8118 
        3.78         6.97        66.51         6.64         6.35         2.93 
TCGA-43-A475 TCGA-46-6025 TCGA-52-7809 TCGA-52-7810 TCGA-52-7812 TCGA-56-5897 
        9.73        10.65         5.42        30.31        27.45         0.10 
TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 TCGA-56-7579 TCGA-56-7582 TCGA-56-8503 
        1.02         0.99         0.43         1.45         0.85         1.35 
TCGA-56-8504 TCGA-56-8622 TCGA-56-8624 TCGA-56-8625 TCGA-56-8626 TCGA-56-8628 
        5.82         1.78         1.18         2.07         0.56         0.53 
TCGA-56-8629 TCGA-56-A4BY TCGA-56-A4ZJ TCGA-56-A4ZK TCGA-56-A5DS TCGA-58-8386 
        1.12         0.99         1.02         0.13         0.26         0.03 
TCGA-58-8387 TCGA-58-8388 TCGA-58-8390 TCGA-58-8391 TCGA-58-A46J TCGA-58-A46K 
       13.25        12.43        29.95        71.24        64.87        34.36 
TCGA-58-A46N TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 TCGA-60-2703 TCGA-60-2704 
       17.72        21.07         3.58        12.23        96.82        37.94 
TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 
       80.42        49.48        66.51        41.39         9.01        56.91 
TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 
       35.34        48.49        42.61         3.16        32.28        29.85 
TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 
       35.90        23.57        26.79        11.77        16.96        43.10 
TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 
       21.07         0.99         1.02         2.01         0.92         0.99 
TCGA-66-2757 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2768 
        0.99        25.02         0.99         2.01         1.02         2.01 
TCGA-66-2769 TCGA-66-2771 TCGA-66-2778 TCGA-66-2780 TCGA-66-2782 TCGA-66-2783 
        7.07        19.00        19.00        12.03        12.00        24.95 
TCGA-66-2785 TCGA-66-2786 TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 TCGA-68-7756 
        1.94        25.97        22.98         4.04        22.98         6.64 
TCGA-68-8250 TCGA-68-8251 TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 
        8.02         3.12        29.56        73.08        75.09        23.28 
TCGA-77-7138 TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 TCGA-77-7338 
       11.18        20.78         0.49        42.25        70.09         0.16 
TCGA-77-7463 TCGA-77-8007 TCGA-77-8008 TCGA-77-8130 TCGA-77-8131 TCGA-77-8136 
       46.78         6.51        86.76        82.92        12.59        39.09 
TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 TCGA-77-8143 TCGA-77-8144 TCGA-77-8145 
       17.69       104.09        11.54        26.40        27.39         6.97 
TCGA-77-8153 TCGA-77-8154 TCGA-77-8156 TCGA-77-A5FZ TCGA-77-A5GB TCGA-77-A5GH 
       55.33        35.90         0.33       126.18        30.81        23.44 
TCGA-85-6560 TCGA-85-6798 TCGA-85-7697 TCGA-85-7699 TCGA-85-7844 TCGA-85-7950 
        0.36         1.12         0.33         0.03         1.25         1.97 
TCGA-85-8048 TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 TCGA-85-8276 
        0.85         0.53        16.77        14.07         1.18         0.43 
TCGA-85-8288 TCGA-85-8350 TCGA-85-8351 TCGA-85-8354 TCGA-85-8355 TCGA-85-8479 
        1.78         1.97         1.81         2.01         0.66         0.72 
TCGA-85-8481 TCGA-85-8582 TCGA-85-8664 TCGA-85-8666 TCGA-85-A4CL TCGA-85-A4QR 
        0.66        13.91         0.10        15.58         0.46         0.82 
TCGA-85-A50M TCGA-85-A513 TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 TCGA-90-7769 
        0.62         0.79        24.89         9.50         2.93        11.77 
TCGA-90-7964 TCGA-90-A4ED TCGA-92-7340 TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 
       14.07         8.02         2.70         4.01         5.26         2.27 
TCGA-94-7033 TCGA-94-7557 TCGA-96-8169 TCGA-96-8170 TCGA-96-A4JL TCGA-98-7454 
        2.86         0.16         6.18         6.90         6.02         8.42 
TCGA-98-8020 TCGA-98-8022 TCGA-J1-A4AH TCGA-L3-A4E7 TCGA-NC-A5HG TCGA-NC-A5HI 
        2.73         7.33         7.30         1.15        50.86        37.32 

  1P LOSS MUTATED 1P LOSS WILD-TYPE 
             0.03              0.03 
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
           141.34            173.79 
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
           14.600            12.395 
[1] "0.0 - 141.3 (14.6)" "0.0 - 173.8 (12.4)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
  "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
  "1P LOSS MUTATED"   "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
  "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-43-A475        TCGA-43-A56V        TCGA-46-3768        TCGA-46-6025 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
  "1P LOSS MUTATED"   "1P LOSS MUTATED"   "1P LOSS MUTATED"   "1P LOSS MUTATED" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-5898 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-56-7730        TCGA-56-7822        TCGA-56-8503        TCGA-56-8504 
  "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-56-8622        TCGA-56-8624        TCGA-56-8625        TCGA-56-8626 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED" 
       TCGA-56-A4BY        TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-58-8386        TCGA-58-8387        TCGA-58-8388        TCGA-58-8390 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-58-8391        TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-58-A46K        TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-60-2695        TCGA-60-2696        TCGA-60-2697        TCGA-60-2698 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-60-2703        TCGA-60-2704        TCGA-60-2706        TCGA-60-2707 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED" 
       TCGA-60-2708        TCGA-60-2709        TCGA-60-2710        TCGA-60-2711 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-60-2712        TCGA-60-2713        TCGA-60-2714        TCGA-60-2715 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-60-2716        TCGA-60-2719        TCGA-60-2720        TCGA-60-2721 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-60-2722        TCGA-60-2723        TCGA-60-2724        TCGA-60-2725 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2753        TCGA-66-2754 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-66-2755        TCGA-66-2756        TCGA-66-2757        TCGA-66-2758 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-66-2759        TCGA-66-2763        TCGA-66-2765        TCGA-66-2766 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-66-2767        TCGA-66-2768        TCGA-66-2769        TCGA-66-2770 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-66-2771        TCGA-66-2773        TCGA-66-2777        TCGA-66-2778 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-66-2780        TCGA-66-2781        TCGA-66-2782        TCGA-66-2783 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-66-2785        TCGA-66-2786        TCGA-66-2787        TCGA-66-2788 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-66-2789        TCGA-66-2790        TCGA-66-2791        TCGA-66-2792 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED" 
       TCGA-66-2793        TCGA-66-2794        TCGA-66-2795        TCGA-66-2800 
  "1P LOSS MUTATED"   "1P LOSS MUTATED"   "1P LOSS MUTATED"   "1P LOSS MUTATED" 
       TCGA-68-7755        TCGA-68-7756        TCGA-68-7757        TCGA-68-8250 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-68-8251        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8007 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-77-8008        TCGA-77-8009        TCGA-77-8128        TCGA-77-8130 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-77-8131        TCGA-77-8133        TCGA-77-8136        TCGA-77-8138 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8140        TCGA-77-8143        TCGA-77-8144 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-77-8145        TCGA-77-8148        TCGA-77-8150        TCGA-77-8153 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ        TCGA-77-A5G3 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6560        TCGA-85-6561 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-7950 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-85-8048        TCGA-85-8049        TCGA-85-8052        TCGA-85-8070 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-85-8071        TCGA-85-8072        TCGA-85-8276        TCGA-85-8277 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-85-8287        TCGA-85-8288        TCGA-85-8350        TCGA-85-8351 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-85-8352        TCGA-85-8353        TCGA-85-8354        TCGA-85-8355 
  "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-85-8479        TCGA-85-8481        TCGA-85-8580        TCGA-85-8582 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-85-8664        TCGA-85-8666        TCGA-85-A4CL        TCGA-85-A4QR 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-85-A50M        TCGA-85-A513        TCGA-85-A53L        TCGA-90-6837 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-90-A4ED        TCGA-90-A4EE        TCGA-92-7340        TCGA-92-7341 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-92-8063        TCGA-92-8064        TCGA-92-8065        TCGA-94-7033 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-94-7557        TCGA-94-7943        TCGA-96-7544        TCGA-96-7545 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED"   "1P LOSS MUTATED" 
       TCGA-96-8169        TCGA-96-8170        TCGA-96-A4JK        TCGA-96-A4JL 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
  "1P LOSS MUTATED"   "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-NC-A5HI 
"1P LOSS WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
  "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
  "1P LOSS MUTATED"   "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
  "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-43-A475        TCGA-43-A56V        TCGA-46-3768        TCGA-46-6025 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
  "1P LOSS MUTATED"   "1P LOSS MUTATED"   "1P LOSS MUTATED"   "1P LOSS MUTATED" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-5898 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-56-7730        TCGA-56-7822        TCGA-56-8503        TCGA-56-8504 
  "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-56-8622        TCGA-56-8624        TCGA-56-8625        TCGA-56-8626 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED" 
       TCGA-56-A4BY        TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-58-8386        TCGA-58-8387        TCGA-58-8388        TCGA-58-8390 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-58-8391        TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-58-A46K        TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-60-2695        TCGA-60-2696        TCGA-60-2697        TCGA-60-2698 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-60-2703        TCGA-60-2704        TCGA-60-2706        TCGA-60-2707 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED" 
       TCGA-60-2708        TCGA-60-2709        TCGA-60-2710        TCGA-60-2711 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-60-2712        TCGA-60-2713        TCGA-60-2714        TCGA-60-2715 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-60-2716        TCGA-60-2719        TCGA-60-2720        TCGA-60-2721 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-60-2722        TCGA-60-2723        TCGA-60-2724        TCGA-60-2725 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-60-2726        TCGA-66-2727        TCGA-66-2734        TCGA-66-2737 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2753        TCGA-66-2754 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-66-2755        TCGA-66-2756        TCGA-66-2757        TCGA-66-2758 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-66-2759        TCGA-66-2763        TCGA-66-2765        TCGA-66-2766 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-66-2767        TCGA-66-2768        TCGA-66-2769        TCGA-66-2770 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-66-2771        TCGA-66-2773        TCGA-66-2777        TCGA-66-2778 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-66-2780        TCGA-66-2781        TCGA-66-2782        TCGA-66-2783 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-66-2785        TCGA-66-2786        TCGA-66-2787        TCGA-66-2788 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-66-2789        TCGA-66-2790        TCGA-66-2791        TCGA-66-2792 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED" 
       TCGA-66-2793        TCGA-66-2794        TCGA-66-2795        TCGA-66-2800 
  "1P LOSS MUTATED"   "1P LOSS MUTATED"   "1P LOSS MUTATED"   "1P LOSS MUTATED" 
       TCGA-68-7755        TCGA-68-7756        TCGA-68-7757        TCGA-68-8250 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-68-8251        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8007 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-77-8008        TCGA-77-8009        TCGA-77-8128        TCGA-77-8130 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-77-8131        TCGA-77-8133        TCGA-77-8136        TCGA-77-8138 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8140        TCGA-77-8143        TCGA-77-8144 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-77-8145        TCGA-77-8148        TCGA-77-8150        TCGA-77-8153 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ        TCGA-77-A5G3 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6560        TCGA-85-6561 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-7950 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-85-8048        TCGA-85-8049        TCGA-85-8052        TCGA-85-8070 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-85-8071        TCGA-85-8072        TCGA-85-8276        TCGA-85-8277 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-85-8287        TCGA-85-8288        TCGA-85-8350        TCGA-85-8351 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-85-8352        TCGA-85-8353        TCGA-85-8354        TCGA-85-8355 
  "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-85-8479        TCGA-85-8481        TCGA-85-8580        TCGA-85-8582 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-85-8664        TCGA-85-8666        TCGA-85-A4CL        TCGA-85-A4QR 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-85-A50M        TCGA-85-A513        TCGA-85-A53L        TCGA-90-6837 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-90-A4ED        TCGA-90-A4EE        TCGA-92-7340        TCGA-92-7341 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-92-8063        TCGA-92-8064        TCGA-92-8065        TCGA-94-7033 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-94-7557        TCGA-94-7943        TCGA-96-7544        TCGA-96-7545 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED"   "1P LOSS MUTATED" 
       TCGA-96-8169        TCGA-96-8170        TCGA-96-A4JK        TCGA-96-A4JL 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
  "1P LOSS MUTATED"   "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-NC-A5HI 
"1P LOSS WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
  "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
  "1P LOSS MUTATED"   "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
  "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-43-A475        TCGA-43-A56V        TCGA-46-3768        TCGA-46-6025 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
  "1P LOSS MUTATED"   "1P LOSS MUTATED"   "1P LOSS MUTATED"   "1P LOSS MUTATED" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-5898 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-56-7730        TCGA-56-7822        TCGA-56-8503        TCGA-56-8504 
  "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-56-8622        TCGA-56-8624        TCGA-56-8625        TCGA-56-8626 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED" 
       TCGA-56-A4BY        TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-58-8386        TCGA-58-8387        TCGA-58-8388        TCGA-58-8390 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-58-8391        TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-58-A46K        TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-60-2695        TCGA-60-2696        TCGA-60-2697        TCGA-60-2698 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-60-2703        TCGA-60-2704        TCGA-60-2706        TCGA-60-2707 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED" 
       TCGA-60-2708        TCGA-60-2709        TCGA-60-2710        TCGA-60-2711 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-60-2712        TCGA-60-2713        TCGA-60-2714        TCGA-60-2715 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-60-2716        TCGA-60-2719        TCGA-60-2720        TCGA-60-2721 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-60-2722        TCGA-60-2723        TCGA-60-2724        TCGA-60-2725 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-60-2726        TCGA-66-2727        TCGA-66-2734        TCGA-66-2737 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2753        TCGA-66-2754 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-66-2755        TCGA-66-2756        TCGA-66-2757        TCGA-66-2758 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-66-2759        TCGA-66-2763        TCGA-66-2765        TCGA-66-2766 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-66-2767        TCGA-66-2768        TCGA-66-2769        TCGA-66-2770 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-66-2771        TCGA-66-2773        TCGA-66-2777        TCGA-66-2778 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-66-2780        TCGA-66-2781        TCGA-66-2782        TCGA-66-2783 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-66-2785        TCGA-66-2786        TCGA-66-2787        TCGA-66-2788 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-66-2789        TCGA-66-2790        TCGA-66-2791        TCGA-66-2792 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED" 
       TCGA-66-2793        TCGA-66-2794        TCGA-66-2795        TCGA-66-2800 
  "1P LOSS MUTATED"   "1P LOSS MUTATED"   "1P LOSS MUTATED"   "1P LOSS MUTATED" 
       TCGA-68-7755        TCGA-68-7756        TCGA-68-7757        TCGA-68-8250 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-68-8251        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8007 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-77-8008        TCGA-77-8009        TCGA-77-8128        TCGA-77-8130 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-77-8131        TCGA-77-8133        TCGA-77-8136        TCGA-77-8138 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8140        TCGA-77-8143        TCGA-77-8144 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-77-8145        TCGA-77-8148        TCGA-77-8150        TCGA-77-8153 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ        TCGA-77-A5G3 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6560        TCGA-85-6561 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-7950 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-85-8048        TCGA-85-8049        TCGA-85-8052        TCGA-85-8070 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-85-8071        TCGA-85-8072        TCGA-85-8276        TCGA-85-8277 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-85-8287        TCGA-85-8288        TCGA-85-8350        TCGA-85-8351 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-85-8352        TCGA-85-8353        TCGA-85-8354        TCGA-85-8355 
  "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-85-8479        TCGA-85-8481        TCGA-85-8580        TCGA-85-8582 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-85-8664        TCGA-85-8666        TCGA-85-A4CL        TCGA-85-A4QR 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-85-A50M        TCGA-85-A513        TCGA-85-A53L        TCGA-90-6837 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-90-A4ED        TCGA-90-A4EE        TCGA-92-7340        TCGA-92-7341 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-92-8063        TCGA-92-8064        TCGA-92-8065        TCGA-94-7033 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-94-7557        TCGA-94-7943        TCGA-96-7544        TCGA-96-7545 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED"   "1P LOSS MUTATED" 
       TCGA-96-8169        TCGA-96-8170        TCGA-96-A4JK        TCGA-96-A4JL 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
  "1P LOSS MUTATED"   "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-NC-A5HI 
"1P LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D41V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  1P LOSS MUTATED         0       17       36        0        17        23
  1P LOSS WILD-TYPE       1       51       97        1        33        48
                   vv
clus                STAGE IIIA STAGE IIIB STAGE IV
  1P LOSS MUTATED           19          8        0
  1P LOSS WILD-TYPE         35         12        5
D41V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  1P LOSS MUTATED    26  71  17   6
  1P LOSS WILD-TYPE  67 179  27  13
D41V4, multiclass
    clus
vv   1P LOSS MUTATED 1P LOSS WILD-TYPE
  T1              26                67
  T2              71               179
  T3              17                27
  T4               6                13
                   vv
clus                 N0  N1  N2  N3
  1P LOSS MUTATED    64  43  10   2
  1P LOSS WILD-TYPE 189  66  24   3
D41V5, multiclass
    clus
vv   1P LOSS MUTATED 1P LOSS WILD-TYPE
  N0              64               189
  N1              43                66
  N2              10                24
  N3               2                 3
                   vv
clus                 M0  M1  MX
  1P LOSS MUTATED   105   0  12
  1P LOSS WILD-TYPE 243   5  35
D41V6, multiclass
    clus
vv   1P LOSS MUTATED 1P LOSS WILD-TYPE
  M0             105               243
  M1               0                 5
  MX              12                35
D41V7, binary
                   cls
clus                  0   1
  1P LOSS MUTATED    20 100
  1P LOSS WILD-TYPE  81 205
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1P LOSS MUTATED     20  100
  1P LOSS WILD-TYPE   81  205
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  FEMALE              20                81
  MALE               100               205
D41V8, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  1P LOSS MUTATED                                       3
  1P LOSS WILD-TYPE                                     9
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  1P LOSS MUTATED                                        1
  1P LOSS WILD-TYPE                                      5
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  1P LOSS MUTATED                                         0
  1P LOSS WILD-TYPE                                       1
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  1P LOSS MUTATED                                                           116
  1P LOSS WILD-TYPE                                                         271
D41V9, multiclass
                                                             clus
vv                                                            1P LOSS MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     3
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                    1
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             116
                                                             clus
vv                                                            1P LOSS WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       9
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                      5
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               271
D41V10, binary
                   cls
clus                  0   1
  1P LOSS MUTATED     5 115
  1P LOSS WILD-TYPE   7 279
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1P LOSS MUTATED      5  115
  1P LOSS WILD-TYPE    7  279
     clus
vv    1P LOSS MUTATED 1P LOSS WILD-TYPE
  NO                5                 7
  YES             115               279
D41V11, continuous
D41V12, continuous
                   vv
clus                 R0  R1  R2  RX
  1P LOSS MUTATED   102   1   2   4
  1P LOSS WILD-TYPE 228   7   2  14
D41V13, multiclass
    clus
vv   1P LOSS MUTATED 1P LOSS WILD-TYPE
  R0             102               228
  R1               1                 7
  R2               2                 2
  RX               4                14

Clustering(42) Variable = 1Q LOSS MUTATION ANALYSIS
D42V1, survival
                   sevent
clus2                 0   1
  1Q LOSS MUTATED    26  17
  1Q LOSS WILD-TYPE 213 121
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
               43               334 
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
               17               121 
$`1Q LOSS MUTATED`
TCGA-21-5786 TCGA-22-4593 TCGA-22-4595 TCGA-22-4604 TCGA-22-5471 TCGA-22-5477 
       33.93        35.08        24.13        13.12        31.73        44.22 
TCGA-34-2605 TCGA-37-4129 TCGA-39-5029 TCGA-39-5034 TCGA-43-3394 TCGA-43-A474 
       28.96         6.54        24.33        36.39        27.02        11.61 
TCGA-43-A56V TCGA-46-3768 TCGA-46-6026 TCGA-51-4079 TCGA-52-7811 TCGA-56-5898 
        5.06         9.96        13.87         0.39         8.75        18.25 
TCGA-56-6545 TCGA-56-7580 TCGA-56-7730 TCGA-56-7822 TCGA-56-A49D TCGA-58-8392 
        2.04         1.32         0.20         0.03         0.99        16.47 
TCGA-60-2714 TCGA-60-2719 TCGA-66-2791 TCGA-66-2793 TCGA-68-7755 TCGA-68-7757 
       50.33        42.61         5.03        10.06         2.73         6.94 
TCGA-77-7139 TCGA-77-8128 TCGA-77-8133 TCGA-77-8150 TCGA-77-A5G3 TCGA-85-7843 
       89.95        37.81        53.92        54.41       117.57         1.15 
TCGA-85-8287 TCGA-85-A53L TCGA-96-7544 TCGA-96-7545 TCGA-96-A4JK TCGA-98-8021 
        1.45         0.43        39.88        44.15         8.98        13.58 
TCGA-98-8023 
       10.13 

$`1Q LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 
      119.54        46.88        99.16        70.13        60.89        34.78 
TCGA-21-1078 TCGA-21-1079 TCGA-21-1080 TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 
       15.55        31.69       122.43         9.30       119.80         8.78 
TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 TCGA-21-5787 TCGA-21-A5DI TCGA-22-0940 
       31.63        88.08        41.69        10.82        32.19        19.99 
TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 
        7.33        14.93         4.31        64.21         1.74        14.10 
TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 TCGA-22-4594 TCGA-22-4596 TCGA-22-4599 
       27.02        48.82        20.45        48.33         0.56        38.17 
TCGA-22-4601 TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 TCGA-22-5472 
       34.75        32.02        19.30         9.53        11.77        64.90 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 
       63.52        14.60         0.79        54.28        71.34        79.20 
TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 
       11.74        18.84        30.08        62.86        56.32        16.60 
TCGA-22-A5C4 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 
        0.95         7.63       114.05        97.94        43.10       173.79 
TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-4587 TCGA-33-4589 TCGA-33-6737 
      103.53       141.34        14.07        54.44        10.98        19.76 
TCGA-33-6738 TCGA-34-2596 TCGA-34-2600 TCGA-34-2604 TCGA-34-2608 TCGA-34-2609 
       26.99         2.63        61.61        31.50        32.84        31.23 
TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 
       50.24        67.79        56.38         9.04        23.24        12.00 
TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 
       14.07        30.94        18.12         4.96         1.08         3.95 
TCGA-37-3789 TCGA-37-3792 TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 
        0.43         0.39         8.09         7.46         7.82         6.81 
TCGA-37-4141 TCGA-37-5819 TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 
        0.39         3.39        47.80        74.07        44.71        68.58 
TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5030 TCGA-39-5031 
       55.17        70.03        60.76         1.71         1.94        27.35 
TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-39-5040 TCGA-43-2576 
       15.58        35.64        35.70        17.88        17.06        40.21 
TCGA-43-2578 TCGA-43-2581 TCGA-43-3920 TCGA-43-5668 TCGA-43-5670 TCGA-43-6143 
       22.49        38.66        33.07        11.47        18.05        12.36 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 
       24.89        10.19         5.42         3.78         6.97         1.58 
TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 TCGA-43-8118 TCGA-43-A475 TCGA-46-6025 
       66.51         6.64         6.35         2.93         9.73        10.65 
TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 TCGA-52-7810 TCGA-52-7812 
        0.39        29.95        17.79         5.42        30.31        27.45 
TCGA-56-1622 TCGA-56-5897 TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 
       28.93         0.10         1.02         0.99         0.43         0.99 
TCGA-56-7579 TCGA-56-7582 TCGA-56-8503 TCGA-56-8504 TCGA-56-8622 TCGA-56-8624 
        1.45         0.85         1.35         5.82         1.78         1.18 
TCGA-56-8625 TCGA-56-8626 TCGA-56-8628 TCGA-56-8629 TCGA-56-A4BX TCGA-56-A4BY 
        2.07         0.56         0.53         1.12         1.51         0.99 
TCGA-56-A4ZJ TCGA-56-A4ZK TCGA-56-A5DS TCGA-58-8386 TCGA-58-8387 TCGA-58-8388 
        1.02         0.13         0.26         0.03        13.25        12.43 
TCGA-58-8390 TCGA-58-8391 TCGA-58-8393 TCGA-58-A46J TCGA-58-A46K TCGA-58-A46L 
       29.95        71.24        34.78        64.87        34.36        36.59 
TCGA-58-A46M TCGA-58-A46N TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 
       23.24        17.72        21.07         3.58        12.23        10.22 
TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 
       96.82        37.94        92.71        21.70        80.42        49.48 
TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2716 
       66.51        41.39         9.01        56.91        35.34        48.49 
TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 
        3.16        32.28        29.85        35.90        23.57        26.79 
TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 
       11.77        16.96        43.10         2.01        21.07         0.99 
TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 
        1.02         2.01         0.92         0.99         0.99        20.98 
TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 
       25.02         0.99         2.01         1.02         2.01         2.01 
TCGA-66-2769 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 
        7.07        23.01        19.00         3.02         2.01        19.00 
TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 
       12.03         3.98        12.00        24.95         1.94        25.97 
TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 TCGA-66-2792 TCGA-66-2794 
       40.01        22.98         4.04        22.98        30.02        54.08 
TCGA-66-2795 TCGA-66-2800 TCGA-68-7756 TCGA-68-8250 TCGA-68-8251 TCGA-77-6842 
        4.01        49.05         6.64         8.02         3.12        29.56 
TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 TCGA-77-7140 TCGA-77-7141 
       73.08        75.09        23.28        11.18        20.78         0.49 
TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 
       42.25        70.09       106.95         0.16        46.78        15.75 
TCGA-77-8007 TCGA-77-8008 TCGA-77-8009 TCGA-77-8130 TCGA-77-8131 TCGA-77-8136 
        6.51        86.76        53.95        82.92        12.59        39.09 
TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 TCGA-77-8143 TCGA-77-8144 TCGA-77-8145 
       17.69       104.09        11.54        26.40        27.39         6.97 
TCGA-77-8148 TCGA-77-8153 TCGA-77-8154 TCGA-77-8156 TCGA-77-A5FZ TCGA-77-A5GB 
        9.63        55.33        35.90         0.33       126.18        30.81 
TCGA-77-A5GH TCGA-85-6560 TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 TCGA-85-7697 
       23.44         0.36         0.79         1.12         0.59         0.33 
TCGA-85-7698 TCGA-85-7699 TCGA-85-7844 TCGA-85-7950 TCGA-85-8048 TCGA-85-8049 
        1.61         0.03         1.25         1.97         0.85         1.97 
TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 TCGA-85-8276 TCGA-85-8277 
        0.53        16.77        14.07         1.18         0.43         0.36 
TCGA-85-8288 TCGA-85-8350 TCGA-85-8351 TCGA-85-8352 TCGA-85-8353 TCGA-85-8354 
        1.78         1.97         1.81         2.20         1.78         2.01 
TCGA-85-8355 TCGA-85-8479 TCGA-85-8481 TCGA-85-8580 TCGA-85-8582 TCGA-85-8664 
        0.66         0.72         0.66        14.60        13.91         0.10 
TCGA-85-8666 TCGA-85-A4CL TCGA-85-A4QR TCGA-85-A50M TCGA-85-A513 TCGA-90-6837 
       15.58         0.46         0.82         0.62         0.79        24.89 
TCGA-90-7766 TCGA-90-7767 TCGA-90-7769 TCGA-90-7964 TCGA-90-A4ED TCGA-90-A4EE 
        9.50         2.93        11.77        14.07         8.02        10.88 
TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 
        2.70         3.48         4.01         5.26         2.27         2.86 
TCGA-94-7557 TCGA-94-7943 TCGA-96-8169 TCGA-96-8170 TCGA-96-A4JL TCGA-98-7454 
        0.16        11.70         6.18         6.90         6.02         8.42 
TCGA-98-8020 TCGA-98-8022 TCGA-J1-A4AH TCGA-L3-A4E7 TCGA-L3-A524 TCGA-LA-A446 
        2.73         7.33         7.30         1.15        14.76         1.18 
TCGA-MF-A522 TCGA-NC-A5HE TCGA-NC-A5HG TCGA-NC-A5HI 
        3.02        56.61        50.86        37.32 

  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
             0.03              0.03 
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
           117.57            173.79 
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
            13.58             13.58 
[1] "0.0 - 117.6 (13.6)" "0.0 - 173.8 (13.6)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-43-A475        TCGA-43-A56V        TCGA-46-3768        TCGA-46-6025 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
  "1Q LOSS MUTATED"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-5898 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-56-7730        TCGA-56-7822        TCGA-56-8503        TCGA-56-8504 
  "1Q LOSS MUTATED"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-56-8622        TCGA-56-8624        TCGA-56-8625        TCGA-56-8626 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-56-A4BY        TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-58-8386        TCGA-58-8387        TCGA-58-8388        TCGA-58-8390 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-58-8391        TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-58-A46K        TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-60-2695        TCGA-60-2696        TCGA-60-2697        TCGA-60-2698 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-60-2703        TCGA-60-2704        TCGA-60-2706        TCGA-60-2707 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-60-2708        TCGA-60-2709        TCGA-60-2710        TCGA-60-2711 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-60-2712        TCGA-60-2713        TCGA-60-2714        TCGA-60-2715 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-60-2716        TCGA-60-2719        TCGA-60-2720        TCGA-60-2721 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-60-2722        TCGA-60-2723        TCGA-60-2724        TCGA-60-2725 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-60-2726        TCGA-66-2727        TCGA-66-2734        TCGA-66-2737 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2753        TCGA-66-2754 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-66-2755        TCGA-66-2756        TCGA-66-2757        TCGA-66-2758 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-66-2759        TCGA-66-2763        TCGA-66-2765        TCGA-66-2766 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-66-2767        TCGA-66-2768        TCGA-66-2769        TCGA-66-2770 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-66-2771        TCGA-66-2773        TCGA-66-2777        TCGA-66-2778 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-66-2780        TCGA-66-2781        TCGA-66-2782        TCGA-66-2783 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-66-2785        TCGA-66-2786        TCGA-66-2787        TCGA-66-2788 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-66-2789        TCGA-66-2790        TCGA-66-2791        TCGA-66-2792 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-66-2793        TCGA-66-2794        TCGA-66-2795        TCGA-66-2800 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-68-7755        TCGA-68-7756        TCGA-68-7757        TCGA-68-8250 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-68-8251        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8007 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-77-8008        TCGA-77-8009        TCGA-77-8128        TCGA-77-8130 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-77-8131        TCGA-77-8133        TCGA-77-8136        TCGA-77-8138 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8140        TCGA-77-8143        TCGA-77-8144 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-77-8145        TCGA-77-8148        TCGA-77-8150        TCGA-77-8153 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ        TCGA-77-A5G3 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6560        TCGA-85-6561 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-7950 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-85-8048        TCGA-85-8049        TCGA-85-8052        TCGA-85-8070 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-85-8071        TCGA-85-8072        TCGA-85-8276        TCGA-85-8277 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-85-8287        TCGA-85-8288        TCGA-85-8350        TCGA-85-8351 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-85-8352        TCGA-85-8353        TCGA-85-8354        TCGA-85-8355 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-85-8479        TCGA-85-8481        TCGA-85-8580        TCGA-85-8582 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-85-8664        TCGA-85-8666        TCGA-85-A4CL        TCGA-85-A4QR 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-85-A50M        TCGA-85-A513        TCGA-85-A53L        TCGA-90-6837 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-90-A4ED        TCGA-90-A4EE        TCGA-92-7340        TCGA-92-7341 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-92-8063        TCGA-92-8064        TCGA-92-8065        TCGA-94-7033 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-94-7557        TCGA-94-7943        TCGA-96-7544        TCGA-96-7545 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED"   "1Q LOSS MUTATED" 
       TCGA-96-8169        TCGA-96-8170        TCGA-96-A4JK        TCGA-96-A4JL 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-NC-A5HI 
"1Q LOSS WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
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"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
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  "1Q LOSS MUTATED"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
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  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
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  "1Q LOSS MUTATED"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
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  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" 
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  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
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"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
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  "1Q LOSS MUTATED"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-56-7730        TCGA-56-7822        TCGA-56-8503        TCGA-56-8504 
  "1Q LOSS MUTATED"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-56-8622        TCGA-56-8624        TCGA-56-8625        TCGA-56-8626 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-56-A4BY        TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-58-8386        TCGA-58-8387        TCGA-58-8388        TCGA-58-8390 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-58-8391        TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-58-A46K        TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-60-2695        TCGA-60-2696        TCGA-60-2697        TCGA-60-2698 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-60-2703        TCGA-60-2704        TCGA-60-2706        TCGA-60-2707 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-60-2708        TCGA-60-2709        TCGA-60-2710        TCGA-60-2711 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-60-2712        TCGA-60-2713        TCGA-60-2714        TCGA-60-2715 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-60-2716        TCGA-60-2719        TCGA-60-2720        TCGA-60-2721 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-60-2722        TCGA-60-2723        TCGA-60-2724        TCGA-60-2725 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-60-2726        TCGA-66-2727        TCGA-66-2734        TCGA-66-2737 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2753        TCGA-66-2754 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-66-2755        TCGA-66-2756        TCGA-66-2757        TCGA-66-2758 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-66-2759        TCGA-66-2763        TCGA-66-2765        TCGA-66-2766 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-66-2767        TCGA-66-2768        TCGA-66-2769        TCGA-66-2770 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-66-2771        TCGA-66-2773        TCGA-66-2777        TCGA-66-2778 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-66-2780        TCGA-66-2781        TCGA-66-2782        TCGA-66-2783 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-66-2785        TCGA-66-2786        TCGA-66-2787        TCGA-66-2788 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-66-2789        TCGA-66-2790        TCGA-66-2791        TCGA-66-2792 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-66-2793        TCGA-66-2794        TCGA-66-2795        TCGA-66-2800 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-68-7755        TCGA-68-7756        TCGA-68-7757        TCGA-68-8250 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-68-8251        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8007 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-77-8008        TCGA-77-8009        TCGA-77-8128        TCGA-77-8130 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-77-8131        TCGA-77-8133        TCGA-77-8136        TCGA-77-8138 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8140        TCGA-77-8143        TCGA-77-8144 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-77-8145        TCGA-77-8148        TCGA-77-8150        TCGA-77-8153 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ        TCGA-77-A5G3 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6560        TCGA-85-6561 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-7950 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-85-8048        TCGA-85-8049        TCGA-85-8052        TCGA-85-8070 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-85-8071        TCGA-85-8072        TCGA-85-8276        TCGA-85-8277 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-85-8287        TCGA-85-8288        TCGA-85-8350        TCGA-85-8351 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-85-8352        TCGA-85-8353        TCGA-85-8354        TCGA-85-8355 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-85-8479        TCGA-85-8481        TCGA-85-8580        TCGA-85-8582 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-85-8664        TCGA-85-8666        TCGA-85-A4CL        TCGA-85-A4QR 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-85-A50M        TCGA-85-A513        TCGA-85-A53L        TCGA-90-6837 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-90-A4ED        TCGA-90-A4EE        TCGA-92-7340        TCGA-92-7341 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-92-8063        TCGA-92-8064        TCGA-92-8065        TCGA-94-7033 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-94-7557        TCGA-94-7943        TCGA-96-7544        TCGA-96-7545 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED"   "1Q LOSS MUTATED" 
       TCGA-96-8169        TCGA-96-8170        TCGA-96-A4JK        TCGA-96-A4JL 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-NC-A5HI 
"1Q LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D42V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  1Q LOSS MUTATED         0        6       10        0        11         9
  1Q LOSS WILD-TYPE       1       62      123        1        39        62
                   vv
clus                STAGE IIIA STAGE IIIB STAGE IV
  1Q LOSS MUTATED            9          3        0
  1Q LOSS WILD-TYPE         45         17        5
D42V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  1Q LOSS MUTATED    11  27   8   2
  1Q LOSS WILD-TYPE  82 223  36  17
D42V4, multiclass
    clus
vv   1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  T1              11                82
  T2              27               223
  T3               8                36
  T4               2                17
                   vv
clus                 N0  N1  N2  N3
  1Q LOSS MUTATED    24  18   5   1
  1Q LOSS WILD-TYPE 229  91  29   4
D42V5, multiclass
    clus
vv   1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  N0              24               229
  N1              18                91
  N2               5                29
  N3               1                 4
                   vv
clus                 M0  M1  MX
  1Q LOSS MUTATED    42   0   4
  1Q LOSS WILD-TYPE 306   5  43
D42V6, multiclass
    clus
vv   1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  M0              42               306
  M1               0                 5
  MX               4                43
D42V7, binary
                   cls
clus                  0   1
  1Q LOSS MUTATED    10  38
  1Q LOSS WILD-TYPE  91 267
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1Q LOSS MUTATED     10   38
  1Q LOSS WILD-TYPE   91  267
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  FEMALE              10                91
  MALE                38               267
D42V8, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  1Q LOSS MUTATED                                       0
  1Q LOSS WILD-TYPE                                    12
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  1Q LOSS MUTATED                                        1
  1Q LOSS WILD-TYPE                                      5
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  1Q LOSS MUTATED                                         0
  1Q LOSS WILD-TYPE                                       1
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  1Q LOSS MUTATED                                                            47
  1Q LOSS WILD-TYPE                                                         340
D42V9, multiclass
                                                             clus
vv                                                            1Q LOSS MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     0
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                    1
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              47
                                                             clus
vv                                                            1Q LOSS WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      12
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                      5
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               340
D42V10, binary
                   cls
clus                  0   1
  1Q LOSS MUTATED     4  44
  1Q LOSS WILD-TYPE   8 350
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1Q LOSS MUTATED      4   44
  1Q LOSS WILD-TYPE    8  350
     clus
vv    1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  NO                4                 8
  YES              44               350
D42V11, continuous
D42V12, continuous
                   vv
clus                 R0  R1  R2  RX
  1Q LOSS MUTATED    38   1   2   1
  1Q LOSS WILD-TYPE 292   7   2  17
D42V13, multiclass
    clus
vv   1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  R0              38               292
  R1               1                 7
  R2               2                 2
  RX               1                17

Clustering(43) Variable = 2P LOSS MUTATION ANALYSIS
D43V1, survival
                   sevent
clus2                 0   1
  2P LOSS MUTATED     8   6
  2P LOSS WILD-TYPE 231 132
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
               14               363 
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
                6               132 
$`2P LOSS MUTATED`
TCGA-21-5787 TCGA-22-5481 TCGA-33-4533 TCGA-37-4141 TCGA-37-5819 TCGA-39-5028 
       10.82        79.20       114.05         0.39         3.39         1.71 
TCGA-39-5029 TCGA-43-2578 TCGA-51-4081 TCGA-56-1622 TCGA-66-2756 TCGA-66-2763 
       24.33        22.49        29.95        28.93         0.99         0.99 
TCGA-77-7465 TCGA-85-8352 
       15.75         2.20 

$`2P LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 
      119.54        46.88        99.16        70.13        60.89        34.78 
TCGA-21-1078 TCGA-21-1079 TCGA-21-1080 TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 
       15.55        31.69       122.43         9.30       119.80         8.78 
TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 TCGA-21-5786 TCGA-21-A5DI TCGA-22-0940 
       31.63        88.08        41.69        33.93        32.19        19.99 
TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 
        7.33        14.93         4.31        64.21         1.74        14.10 
TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 TCGA-22-4593 TCGA-22-4594 TCGA-22-4595 
       27.02        48.82        20.45        35.08        48.33        24.13 
TCGA-22-4596 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 
        0.56        38.17        34.75        13.12        32.02        19.30 
TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 
        9.53        11.77        31.73        64.90        63.52        14.60 
TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 TCGA-22-5482 TCGA-22-5483 
       44.22         0.79        54.28        71.34        11.74        18.84 
TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-22-A5C4 TCGA-33-4532 
       30.08        62.86        56.32        16.60         0.95         7.63 
TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 
       97.94        43.10       173.79       103.53       141.34        14.07 
TCGA-33-4587 TCGA-33-4589 TCGA-33-6737 TCGA-33-6738 TCGA-34-2596 TCGA-34-2600 
       54.44        10.98        19.76        26.99         2.63        61.61 
TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 TCGA-34-5232 
       31.50        28.96        32.84        31.23        50.24        67.79 
TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 
       56.38         9.04        23.24        12.00        14.07        30.94 
TCGA-34-5928 TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 
       18.12         4.96         1.08         3.95         0.43         0.39 
TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 TCGA-39-5011 
        6.54         8.09         7.46         7.82         6.81        47.80 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 
       74.07        44.71        68.58        55.17        70.03        60.76 
TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 
        1.94        27.35        36.39        15.58        35.64        35.70 
TCGA-39-5039 TCGA-39-5040 TCGA-43-2576 TCGA-43-2581 TCGA-43-3394 TCGA-43-3920 
       17.88        17.06        40.21        38.66        27.02        33.07 
TCGA-43-5668 TCGA-43-5670 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 
       11.47        18.05        12.36        24.89        10.19         5.42 
TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 
        3.78         6.97         1.58        66.51         6.64         6.35 
TCGA-43-8118 TCGA-43-A474 TCGA-43-A475 TCGA-43-A56V TCGA-46-3768 TCGA-46-6025 
        2.93        11.61         9.73         5.06         9.96        10.65 
TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-52-7622 TCGA-52-7809 TCGA-52-7810 
       13.87         0.39         0.39        17.79         5.42        30.31 
TCGA-52-7811 TCGA-52-7812 TCGA-56-5897 TCGA-56-5898 TCGA-56-6545 TCGA-56-6546 
        8.75        27.45         0.10        18.25         2.04         1.02 
TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 
        0.99         0.43         0.99         1.45         1.32         0.85 
TCGA-56-7730 TCGA-56-7822 TCGA-56-8503 TCGA-56-8504 TCGA-56-8622 TCGA-56-8624 
        0.20         0.03         1.35         5.82         1.78         1.18 
TCGA-56-8625 TCGA-56-8626 TCGA-56-8628 TCGA-56-8629 TCGA-56-A49D TCGA-56-A4BX 
        2.07         0.56         0.53         1.12         0.99         1.51 
TCGA-56-A4BY TCGA-56-A4ZJ TCGA-56-A4ZK TCGA-56-A5DS TCGA-58-8386 TCGA-58-8387 
        0.99         1.02         0.13         0.26         0.03        13.25 
TCGA-58-8388 TCGA-58-8390 TCGA-58-8391 TCGA-58-8392 TCGA-58-8393 TCGA-58-A46J 
       12.43        29.95        71.24        16.47        34.78        64.87 
TCGA-58-A46K TCGA-58-A46L TCGA-58-A46M TCGA-58-A46N TCGA-60-2695 TCGA-60-2696 
       34.36        36.59        23.24        17.72        21.07         3.58 
TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 
       12.23        10.22        96.82        37.94        92.71        21.70 
TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 
       80.42        49.48        66.51        41.39         9.01        56.91 
TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 
       50.33        35.34        48.49        42.61         3.16        32.28 
TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 
       29.85        35.90        23.57        26.79        11.77        16.96 
TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 
       43.10         2.01        21.07         0.99         1.02         2.01 
TCGA-66-2755 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2765 TCGA-66-2766 
        0.92         0.99        20.98        25.02         2.01         1.02 
TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 
        2.01         2.01         7.07        23.01        19.00         3.02 
TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 
        2.01        19.00        12.03         3.98        12.00        24.95 
TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 
        1.94        25.97        40.01        22.98         4.04        22.98 
TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 
        5.03        30.02        10.06        54.08         4.01        49.05 
TCGA-68-7755 TCGA-68-7756 TCGA-68-7757 TCGA-68-8250 TCGA-68-8251 TCGA-77-6842 
        2.73         6.64         6.94         8.02         3.12        29.56 
TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 TCGA-77-7140 
       73.08        75.09        23.28        11.18        89.95        20.78 
TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 
        0.49        42.25        70.09       106.95         0.16        46.78 
TCGA-77-8007 TCGA-77-8008 TCGA-77-8009 TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 
        6.51        86.76        53.95        37.81        82.92        12.59 
TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 TCGA-77-8143 
       53.92        39.09        17.69       104.09        11.54        26.40 
TCGA-77-8144 TCGA-77-8145 TCGA-77-8148 TCGA-77-8150 TCGA-77-8153 TCGA-77-8154 
       27.39         6.97         9.63        54.41        55.33        35.90 
TCGA-77-8156 TCGA-77-A5FZ TCGA-77-A5G3 TCGA-77-A5GB TCGA-77-A5GH TCGA-85-6560 
        0.33       126.18       117.57        30.81        23.44         0.36 
TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 TCGA-85-7697 TCGA-85-7698 TCGA-85-7699 
        0.79         1.12         0.59         0.33         1.61         0.03 
TCGA-85-7843 TCGA-85-7844 TCGA-85-7950 TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 
        1.15         1.25         1.97         0.85         1.97         0.53 
TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 TCGA-85-8276 TCGA-85-8277 TCGA-85-8287 
       16.77        14.07         1.18         0.43         0.36         1.45 
TCGA-85-8288 TCGA-85-8350 TCGA-85-8351 TCGA-85-8353 TCGA-85-8354 TCGA-85-8355 
        1.78         1.97         1.81         1.78         2.01         0.66 
TCGA-85-8479 TCGA-85-8481 TCGA-85-8580 TCGA-85-8582 TCGA-85-8664 TCGA-85-8666 
        0.72         0.66        14.60        13.91         0.10        15.58 
TCGA-85-A4CL TCGA-85-A4QR TCGA-85-A50M TCGA-85-A513 TCGA-85-A53L TCGA-90-6837 
        0.46         0.82         0.62         0.79         0.43        24.89 
TCGA-90-7766 TCGA-90-7767 TCGA-90-7769 TCGA-90-7964 TCGA-90-A4ED TCGA-90-A4EE 
        9.50         2.93        11.77        14.07         8.02        10.88 
TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 
        2.70         3.48         4.01         5.26         2.27         2.86 
TCGA-94-7557 TCGA-94-7943 TCGA-96-7544 TCGA-96-7545 TCGA-96-8169 TCGA-96-8170 
        0.16        11.70        39.88        44.15         6.18         6.90 
TCGA-96-A4JK TCGA-96-A4JL TCGA-98-7454 TCGA-98-8020 TCGA-98-8021 TCGA-98-8022 
        8.98         6.02         8.42         2.73        13.58         7.33 
TCGA-98-8023 TCGA-J1-A4AH TCGA-L3-A4E7 TCGA-L3-A524 TCGA-LA-A446 TCGA-MF-A522 
       10.13         7.30         1.15        14.76         1.18         3.02 
TCGA-NC-A5HE TCGA-NC-A5HG TCGA-NC-A5HI 
       56.61        50.86        37.32 

  2P LOSS MUTATED 2P LOSS WILD-TYPE 
             0.39              0.03 
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
           114.05            173.79 
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
           13.285            13.580 
[1] "0.4 - 114.0 (13.3)" "0.0 - 173.8 (13.6)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED"   "2P LOSS MUTATED" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56V        TCGA-46-3768        TCGA-46-6025 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-5898 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-56-7730        TCGA-56-7822        TCGA-56-8503        TCGA-56-8504 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-56-8622        TCGA-56-8624        TCGA-56-8625        TCGA-56-8626 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-56-A4BY        TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-58-8386        TCGA-58-8387        TCGA-58-8388        TCGA-58-8390 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-58-8391        TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-58-A46K        TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-60-2695        TCGA-60-2696        TCGA-60-2697        TCGA-60-2698 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-60-2703        TCGA-60-2704        TCGA-60-2706        TCGA-60-2707 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-60-2708        TCGA-60-2709        TCGA-60-2710        TCGA-60-2711 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-60-2712        TCGA-60-2713        TCGA-60-2714        TCGA-60-2715 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-60-2716        TCGA-60-2719        TCGA-60-2720        TCGA-60-2721 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-60-2722        TCGA-60-2723        TCGA-60-2724        TCGA-60-2725 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-60-2726        TCGA-66-2727        TCGA-66-2734        TCGA-66-2737 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2753        TCGA-66-2754 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-66-2755        TCGA-66-2756        TCGA-66-2757        TCGA-66-2758 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-66-2759        TCGA-66-2763        TCGA-66-2765        TCGA-66-2766 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-66-2767        TCGA-66-2768        TCGA-66-2769        TCGA-66-2770 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-66-2771        TCGA-66-2773        TCGA-66-2777        TCGA-66-2778 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-66-2780        TCGA-66-2781        TCGA-66-2782        TCGA-66-2783 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-66-2785        TCGA-66-2786        TCGA-66-2787        TCGA-66-2788 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-66-2789        TCGA-66-2790        TCGA-66-2791        TCGA-66-2792 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-66-2793        TCGA-66-2794        TCGA-66-2795        TCGA-66-2800 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-68-7755        TCGA-68-7756        TCGA-68-7757        TCGA-68-8250 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-68-8251        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8007 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-77-8008        TCGA-77-8009        TCGA-77-8128        TCGA-77-8130 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-77-8131        TCGA-77-8133        TCGA-77-8136        TCGA-77-8138 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8140        TCGA-77-8143        TCGA-77-8144 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-77-8145        TCGA-77-8148        TCGA-77-8150        TCGA-77-8153 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ        TCGA-77-A5G3 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6560        TCGA-85-6561 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-7950 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-85-8048        TCGA-85-8049        TCGA-85-8052        TCGA-85-8070 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-85-8071        TCGA-85-8072        TCGA-85-8276        TCGA-85-8277 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-85-8287        TCGA-85-8288        TCGA-85-8350        TCGA-85-8351 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-85-8352        TCGA-85-8353        TCGA-85-8354        TCGA-85-8355 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-85-8479        TCGA-85-8481        TCGA-85-8580        TCGA-85-8582 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-85-8664        TCGA-85-8666        TCGA-85-A4CL        TCGA-85-A4QR 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-85-A50M        TCGA-85-A513        TCGA-85-A53L        TCGA-90-6837 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-90-A4ED        TCGA-90-A4EE        TCGA-92-7340        TCGA-92-7341 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-92-8063        TCGA-92-8064        TCGA-92-8065        TCGA-94-7033 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-94-7557        TCGA-94-7943        TCGA-96-7544        TCGA-96-7545 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-96-8169        TCGA-96-8170        TCGA-96-A4JK        TCGA-96-A4JL 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-NC-A5HI 
"2P LOSS WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED"   "2P LOSS MUTATED" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56V        TCGA-46-3768        TCGA-46-6025 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-5898 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-56-7730        TCGA-56-7822        TCGA-56-8503        TCGA-56-8504 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-56-8622        TCGA-56-8624        TCGA-56-8625        TCGA-56-8626 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-56-A4BY        TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-58-8386        TCGA-58-8387        TCGA-58-8388        TCGA-58-8390 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-58-8391        TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-58-A46K        TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-60-2695        TCGA-60-2696        TCGA-60-2697        TCGA-60-2698 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-60-2703        TCGA-60-2704        TCGA-60-2706        TCGA-60-2707 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-60-2708        TCGA-60-2709        TCGA-60-2710        TCGA-60-2711 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-60-2712        TCGA-60-2713        TCGA-60-2714        TCGA-60-2715 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-60-2716        TCGA-60-2719        TCGA-60-2720        TCGA-60-2721 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-60-2722        TCGA-60-2723        TCGA-60-2724        TCGA-60-2725 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-60-2726        TCGA-66-2727        TCGA-66-2734        TCGA-66-2737 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2753        TCGA-66-2754 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-66-2755        TCGA-66-2756        TCGA-66-2757        TCGA-66-2758 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-66-2759        TCGA-66-2763        TCGA-66-2765        TCGA-66-2766 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-66-2767        TCGA-66-2768        TCGA-66-2769        TCGA-66-2770 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-66-2771        TCGA-66-2773        TCGA-66-2777        TCGA-66-2778 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-66-2780        TCGA-66-2781        TCGA-66-2782        TCGA-66-2783 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-66-2785        TCGA-66-2786        TCGA-66-2787        TCGA-66-2788 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-66-2789        TCGA-66-2790        TCGA-66-2791        TCGA-66-2792 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-66-2793        TCGA-66-2794        TCGA-66-2795        TCGA-66-2800 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-68-7755        TCGA-68-7756        TCGA-68-7757        TCGA-68-8250 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-68-8251        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8007 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-77-8008        TCGA-77-8009        TCGA-77-8128        TCGA-77-8130 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-77-8131        TCGA-77-8133        TCGA-77-8136        TCGA-77-8138 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8140        TCGA-77-8143        TCGA-77-8144 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-77-8145        TCGA-77-8148        TCGA-77-8150        TCGA-77-8153 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ        TCGA-77-A5G3 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6560        TCGA-85-6561 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-7950 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-85-8048        TCGA-85-8049        TCGA-85-8052        TCGA-85-8070 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-85-8071        TCGA-85-8072        TCGA-85-8276        TCGA-85-8277 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-85-8287        TCGA-85-8288        TCGA-85-8350        TCGA-85-8351 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-85-8352        TCGA-85-8353        TCGA-85-8354        TCGA-85-8355 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-85-8479        TCGA-85-8481        TCGA-85-8580        TCGA-85-8582 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-85-8664        TCGA-85-8666        TCGA-85-A4CL        TCGA-85-A4QR 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-85-A50M        TCGA-85-A513        TCGA-85-A53L        TCGA-90-6837 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-90-A4ED        TCGA-90-A4EE        TCGA-92-7340        TCGA-92-7341 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-92-8063        TCGA-92-8064        TCGA-92-8065        TCGA-94-7033 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-94-7557        TCGA-94-7943        TCGA-96-7544        TCGA-96-7545 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-96-8169        TCGA-96-8170        TCGA-96-A4JK        TCGA-96-A4JL 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-NC-A5HI 
"2P LOSS WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED"   "2P LOSS MUTATED" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56V        TCGA-46-3768        TCGA-46-6025 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-5898 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-56-7730        TCGA-56-7822        TCGA-56-8503        TCGA-56-8504 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-56-8622        TCGA-56-8624        TCGA-56-8625        TCGA-56-8626 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-56-A4BY        TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-58-8386        TCGA-58-8387        TCGA-58-8388        TCGA-58-8390 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-58-8391        TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-58-A46K        TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-60-2695        TCGA-60-2696        TCGA-60-2697        TCGA-60-2698 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-60-2703        TCGA-60-2704        TCGA-60-2706        TCGA-60-2707 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-60-2708        TCGA-60-2709        TCGA-60-2710        TCGA-60-2711 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-60-2712        TCGA-60-2713        TCGA-60-2714        TCGA-60-2715 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-60-2716        TCGA-60-2719        TCGA-60-2720        TCGA-60-2721 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-60-2722        TCGA-60-2723        TCGA-60-2724        TCGA-60-2725 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-60-2726        TCGA-66-2727        TCGA-66-2734        TCGA-66-2737 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2753        TCGA-66-2754 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-66-2755        TCGA-66-2756        TCGA-66-2757        TCGA-66-2758 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-66-2759        TCGA-66-2763        TCGA-66-2765        TCGA-66-2766 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-66-2767        TCGA-66-2768        TCGA-66-2769        TCGA-66-2770 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-66-2771        TCGA-66-2773        TCGA-66-2777        TCGA-66-2778 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-66-2780        TCGA-66-2781        TCGA-66-2782        TCGA-66-2783 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-66-2785        TCGA-66-2786        TCGA-66-2787        TCGA-66-2788 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-66-2789        TCGA-66-2790        TCGA-66-2791        TCGA-66-2792 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-66-2793        TCGA-66-2794        TCGA-66-2795        TCGA-66-2800 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-68-7755        TCGA-68-7756        TCGA-68-7757        TCGA-68-8250 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-68-8251        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8007 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-77-8008        TCGA-77-8009        TCGA-77-8128        TCGA-77-8130 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-77-8131        TCGA-77-8133        TCGA-77-8136        TCGA-77-8138 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8140        TCGA-77-8143        TCGA-77-8144 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-77-8145        TCGA-77-8148        TCGA-77-8150        TCGA-77-8153 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ        TCGA-77-A5G3 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6560        TCGA-85-6561 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-7950 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-85-8048        TCGA-85-8049        TCGA-85-8052        TCGA-85-8070 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-85-8071        TCGA-85-8072        TCGA-85-8276        TCGA-85-8277 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-85-8287        TCGA-85-8288        TCGA-85-8350        TCGA-85-8351 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-85-8352        TCGA-85-8353        TCGA-85-8354        TCGA-85-8355 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-85-8479        TCGA-85-8481        TCGA-85-8580        TCGA-85-8582 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-85-8664        TCGA-85-8666        TCGA-85-A4CL        TCGA-85-A4QR 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-85-A50M        TCGA-85-A513        TCGA-85-A53L        TCGA-90-6837 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-90-A4ED        TCGA-90-A4EE        TCGA-92-7340        TCGA-92-7341 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-92-8063        TCGA-92-8064        TCGA-92-8065        TCGA-94-7033 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-94-7557        TCGA-94-7943        TCGA-96-7544        TCGA-96-7545 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-96-8169        TCGA-96-8170        TCGA-96-A4JK        TCGA-96-A4JL 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-NC-A5HI 
"2P LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D43V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  2P LOSS MUTATED         0        2        3        0         1         3
  2P LOSS WILD-TYPE       1       66      130        1        49        68
                   vv
clus                STAGE IIIA STAGE IIIB STAGE IV
  2P LOSS MUTATED            5          1        0
  2P LOSS WILD-TYPE         49         19        5
D43V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  2P LOSS MUTATED     3   9   1   2
  2P LOSS WILD-TYPE  90 241  43  17
D43V4, multiclass
    clus
vv   2P LOSS MUTATED 2P LOSS WILD-TYPE
  T1               3                90
  T2               9               241
  T3               1                43
  T4               2                17
                   vv
clus                 N0  N1  N2  N3
  2P LOSS MUTATED     6   6   3   0
  2P LOSS WILD-TYPE 247 103  31   5
D43V5, multiclass
    clus
vv   2P LOSS MUTATED 2P LOSS WILD-TYPE
  N0               6               247
  N1               6               103
  N2               3                31
  N3               0                 5
                   vv
clus                 M0  M1  MX
  2P LOSS MUTATED    15   0   0
  2P LOSS WILD-TYPE 333   5  47
D43V6, multiclass
    clus
vv   2P LOSS MUTATED 2P LOSS WILD-TYPE
  M0              15               333
  M1               0                 5
  MX               0                47
D43V7, binary
                   cls
clus                  0   1
  2P LOSS MUTATED     5  10
  2P LOSS WILD-TYPE  96 295
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2P LOSS MUTATED      5   10
  2P LOSS WILD-TYPE   96  295
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  FEMALE               5                96
  MALE                10               295
D43V8, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  2P LOSS MUTATED                                       0
  2P LOSS WILD-TYPE                                    12
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  2P LOSS MUTATED                                        0
  2P LOSS WILD-TYPE                                      6
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  2P LOSS MUTATED                                         0
  2P LOSS WILD-TYPE                                       1
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  2P LOSS MUTATED                                                            15
  2P LOSS WILD-TYPE                                                         372
D43V9, multiclass
                                                             clus
vv                                                            2P LOSS MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     0
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                    0
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              15
                                                             clus
vv                                                            2P LOSS WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      12
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                      6
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               372
D43V10, binary
                   cls
clus                  0   1
  2P LOSS MUTATED     1  14
  2P LOSS WILD-TYPE  11 380
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2P LOSS MUTATED      1   14
  2P LOSS WILD-TYPE   11  380
     clus
vv    2P LOSS MUTATED 2P LOSS WILD-TYPE
  NO                1                11
  YES              14               380
D43V11, continuous
D43V12, continuous
                   vv
clus                 R0  R1  R2  RX
  2P LOSS MUTATED    15   0   0   0
  2P LOSS WILD-TYPE 315   8   4  18
D43V13, multiclass
    clus
vv   2P LOSS MUTATED 2P LOSS WILD-TYPE
  R0              15               315
  R1               0                 8
  R2               0                 4
  RX               0                18

Clustering(44) Variable = 2Q LOSS MUTATION ANALYSIS
D44V1, survival
                   sevent
clus2                 0   1
  2Q LOSS MUTATED    19  10
  2Q LOSS WILD-TYPE 220 128
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
               29               348 
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
               10               128 
$`2Q LOSS MUTATED`
TCGA-18-3417 TCGA-21-1082 TCGA-21-5786 TCGA-21-5787 TCGA-22-4604 TCGA-22-5481 
       24.92       119.80        33.93        10.82        13.12        79.20 
TCGA-33-4533 TCGA-37-4141 TCGA-39-5028 TCGA-43-2578 TCGA-43-7657 TCGA-43-8115 
      114.05         0.39         1.71        22.49         1.58         6.64 
TCGA-51-4081 TCGA-56-1622 TCGA-58-8392 TCGA-58-A46K TCGA-60-2713 TCGA-60-2724 
       29.95        28.93        16.47        34.36        56.91        23.57 
TCGA-66-2763 TCGA-66-2767 TCGA-66-2800 TCGA-77-7465 TCGA-77-8007 TCGA-77-8136 
        0.99         2.01        49.05        15.75         6.51        39.09 
TCGA-85-7696 TCGA-85-7699 TCGA-85-8288 TCGA-85-8352 TCGA-85-8664 
        0.59         0.03         1.78         2.20         0.10 

$`2Q LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3419 TCGA-18-3421 
       11.34        13.02        59.51        28.34         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       119.54 
TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 
       46.88        99.16        70.13        60.89        34.78        15.55 
TCGA-21-1079 TCGA-21-1080 TCGA-21-1081 TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 
       31.69       122.43         9.30         8.78        31.63        88.08 
TCGA-21-5784 TCGA-21-A5DI TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 
       41.69        32.19        19.99         7.33        14.93         4.31 
TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 
       64.21         1.74        14.10        27.02        48.82        20.45 
TCGA-22-4593 TCGA-22-4594 TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 TCGA-22-4601 
       35.08        48.33        24.13         0.56        38.17        34.75 
TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 
       32.02        19.30         9.53        11.77        31.73        64.90 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 
       63.52        14.60        44.22         0.79        54.28        71.34 
TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 
       11.74        18.84        30.08        62.86        56.32        16.60 
TCGA-22-A5C4 TCGA-33-4532 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 
        0.95         7.63        97.94        43.10       173.79       103.53 
TCGA-33-4583 TCGA-33-4586 TCGA-33-4587 TCGA-33-4589 TCGA-33-6737 TCGA-33-6738 
      141.34        14.07        54.44        10.98        19.76        26.99 
TCGA-34-2596 TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 
        2.63        61.61        31.50        28.96        32.84        31.23 
TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 
       50.24        67.79        56.38         9.04        23.24        12.00 
TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 
       14.07        30.94        18.12         4.96         1.08         3.95 
TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 
        0.43         0.39         6.54         8.09         7.46         7.82 
TCGA-37-4135 TCGA-37-5819 TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 
        6.81         3.39        47.80        74.07        44.71        68.58 
TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 
       55.17        70.03        60.76        24.33         1.94        27.35 
TCGA-39-5034 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-39-5040 
       36.39        15.58        35.64        35.70        17.88        17.06 
TCGA-43-2576 TCGA-43-2581 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-5670 
       40.21        38.66        27.02        33.07        11.47        18.05 
TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 
       12.36        24.89        10.19         5.42         3.78         6.97 
TCGA-43-7658 TCGA-43-8116 TCGA-43-8118 TCGA-43-A474 TCGA-43-A475 TCGA-43-A56V 
       66.51         6.35         2.93        11.61         9.73         5.06 
TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-52-7622 
        9.96        10.65        13.87         0.39         0.39        17.79 
TCGA-52-7809 TCGA-52-7810 TCGA-52-7811 TCGA-52-7812 TCGA-56-5897 TCGA-56-5898 
        5.42        30.31         8.75        27.45         0.10        18.25 
TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 
        2.04         1.02         0.99         0.43         0.99         1.45 
TCGA-56-7580 TCGA-56-7582 TCGA-56-7730 TCGA-56-7822 TCGA-56-8503 TCGA-56-8504 
        1.32         0.85         0.20         0.03         1.35         5.82 
TCGA-56-8622 TCGA-56-8624 TCGA-56-8625 TCGA-56-8626 TCGA-56-8628 TCGA-56-8629 
        1.78         1.18         2.07         0.56         0.53         1.12 
TCGA-56-A49D TCGA-56-A4BX TCGA-56-A4BY TCGA-56-A4ZJ TCGA-56-A4ZK TCGA-56-A5DS 
        0.99         1.51         0.99         1.02         0.13         0.26 
TCGA-58-8386 TCGA-58-8387 TCGA-58-8388 TCGA-58-8390 TCGA-58-8391 TCGA-58-8393 
        0.03        13.25        12.43        29.95        71.24        34.78 
TCGA-58-A46J TCGA-58-A46L TCGA-58-A46M TCGA-58-A46N TCGA-60-2695 TCGA-60-2696 
       64.87        36.59        23.24        17.72        21.07         3.58 
TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 
       12.23        10.22        96.82        37.94        92.71        21.70 
TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2714 
       80.42        49.48        66.51        41.39         9.01        50.33 
TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 
       35.34        48.49        42.61         3.16        32.28        29.85 
TCGA-60-2723 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 
       35.90        26.79        11.77        16.96        43.10         2.01 
TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 
       21.07         0.99         1.02         2.01         0.92         0.99 
TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2765 TCGA-66-2766 TCGA-66-2768 
        0.99        20.98        25.02         2.01         1.02         2.01 
TCGA-66-2769 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 
        7.07        23.01        19.00         3.02         2.01        19.00 
TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 
       12.03         3.98        12.00        24.95         1.94        25.97 
TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 TCGA-66-2792 
       40.01        22.98         4.04        22.98         5.03        30.02 
TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-68-7755 TCGA-68-7756 TCGA-68-7757 
       10.06        54.08         4.01         2.73         6.64         6.94 
TCGA-68-8250 TCGA-68-8251 TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 
        8.02         3.12        29.56        73.08        75.09        23.28 
TCGA-77-7138 TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 
       11.18        89.95        20.78         0.49        42.25        70.09 
TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 TCGA-77-8008 TCGA-77-8009 TCGA-77-8128 
      106.95         0.16        46.78        86.76        53.95        37.81 
TCGA-77-8130 TCGA-77-8131 TCGA-77-8133 TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 
       82.92        12.59        53.92        17.69       104.09        11.54 
TCGA-77-8143 TCGA-77-8144 TCGA-77-8145 TCGA-77-8148 TCGA-77-8150 TCGA-77-8153 
       26.40        27.39         6.97         9.63        54.41        55.33 
TCGA-77-8154 TCGA-77-8156 TCGA-77-A5FZ TCGA-77-A5G3 TCGA-77-A5GB TCGA-77-A5GH 
       35.90         0.33       126.18       117.57        30.81        23.44 
TCGA-85-6560 TCGA-85-6561 TCGA-85-6798 TCGA-85-7697 TCGA-85-7698 TCGA-85-7843 
        0.36         0.79         1.12         0.33         1.61         1.15 
TCGA-85-7844 TCGA-85-7950 TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 
        1.25         1.97         0.85         1.97         0.53        16.77 
TCGA-85-8071 TCGA-85-8072 TCGA-85-8276 TCGA-85-8277 TCGA-85-8287 TCGA-85-8350 
       14.07         1.18         0.43         0.36         1.45         1.97 
TCGA-85-8351 TCGA-85-8353 TCGA-85-8354 TCGA-85-8355 TCGA-85-8479 TCGA-85-8481 
        1.81         1.78         2.01         0.66         0.72         0.66 
TCGA-85-8580 TCGA-85-8582 TCGA-85-8666 TCGA-85-A4CL TCGA-85-A4QR TCGA-85-A50M 
       14.60        13.91        15.58         0.46         0.82         0.62 
TCGA-85-A513 TCGA-85-A53L TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 TCGA-90-7769 
        0.79         0.43        24.89         9.50         2.93        11.77 
TCGA-90-7964 TCGA-90-A4ED TCGA-90-A4EE TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 
       14.07         8.02        10.88         2.70         3.48         4.01 
TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 TCGA-94-7943 TCGA-96-7544 
        5.26         2.27         2.86         0.16        11.70        39.88 
TCGA-96-7545 TCGA-96-8169 TCGA-96-8170 TCGA-96-A4JK TCGA-96-A4JL TCGA-98-7454 
       44.15         6.18         6.90         8.98         6.02         8.42 
TCGA-98-8020 TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 TCGA-J1-A4AH TCGA-L3-A4E7 
        2.73        13.58         7.33        10.13         7.30         1.15 
TCGA-L3-A524 TCGA-LA-A446 TCGA-MF-A522 TCGA-NC-A5HE TCGA-NC-A5HG TCGA-NC-A5HI 
       14.76         1.18         3.02        56.61        50.86        37.32 

  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
             0.03              0.03 
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
           119.80            173.79 
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
           15.750            13.415 
[1] "0.0 - 119.8 (15.8)" "0.0 - 173.8 (13.4)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56V        TCGA-46-3768        TCGA-46-6025 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-5898 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-56-7730        TCGA-56-7822        TCGA-56-8503        TCGA-56-8504 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-56-8622        TCGA-56-8624        TCGA-56-8625        TCGA-56-8626 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-56-A4BY        TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-58-8386        TCGA-58-8387        TCGA-58-8388        TCGA-58-8390 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-58-8391        TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-58-A46K        TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-60-2695        TCGA-60-2696        TCGA-60-2697        TCGA-60-2698 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-60-2703        TCGA-60-2704        TCGA-60-2706        TCGA-60-2707 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-60-2708        TCGA-60-2709        TCGA-60-2710        TCGA-60-2711 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-60-2712        TCGA-60-2713        TCGA-60-2714        TCGA-60-2715 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-60-2716        TCGA-60-2719        TCGA-60-2720        TCGA-60-2721 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-60-2722        TCGA-60-2723        TCGA-60-2724        TCGA-60-2725 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-60-2726        TCGA-66-2727        TCGA-66-2734        TCGA-66-2737 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2753        TCGA-66-2754 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-66-2755        TCGA-66-2756        TCGA-66-2757        TCGA-66-2758 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-66-2759        TCGA-66-2763        TCGA-66-2765        TCGA-66-2766 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-66-2767        TCGA-66-2768        TCGA-66-2769        TCGA-66-2770 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-66-2771        TCGA-66-2773        TCGA-66-2777        TCGA-66-2778 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-66-2780        TCGA-66-2781        TCGA-66-2782        TCGA-66-2783 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-66-2785        TCGA-66-2786        TCGA-66-2787        TCGA-66-2788 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-66-2789        TCGA-66-2790        TCGA-66-2791        TCGA-66-2792 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-66-2793        TCGA-66-2794        TCGA-66-2795        TCGA-66-2800 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-68-7755        TCGA-68-7756        TCGA-68-7757        TCGA-68-8250 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-68-8251        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8007 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED"   "2Q LOSS MUTATED" 
       TCGA-77-8008        TCGA-77-8009        TCGA-77-8128        TCGA-77-8130 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-77-8131        TCGA-77-8133        TCGA-77-8136        TCGA-77-8138 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8140        TCGA-77-8143        TCGA-77-8144 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-77-8145        TCGA-77-8148        TCGA-77-8150        TCGA-77-8153 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ        TCGA-77-A5G3 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6560        TCGA-85-6561 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-7950 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-85-8048        TCGA-85-8049        TCGA-85-8052        TCGA-85-8070 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-85-8071        TCGA-85-8072        TCGA-85-8276        TCGA-85-8277 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-85-8287        TCGA-85-8288        TCGA-85-8350        TCGA-85-8351 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-85-8352        TCGA-85-8353        TCGA-85-8354        TCGA-85-8355 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-85-8479        TCGA-85-8481        TCGA-85-8580        TCGA-85-8582 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-85-8664        TCGA-85-8666        TCGA-85-A4CL        TCGA-85-A4QR 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-85-A50M        TCGA-85-A513        TCGA-85-A53L        TCGA-90-6837 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-90-A4ED        TCGA-90-A4EE        TCGA-92-7340        TCGA-92-7341 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-92-8063        TCGA-92-8064        TCGA-92-8065        TCGA-94-7033 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-94-7557        TCGA-94-7943        TCGA-96-7544        TCGA-96-7545 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-96-8169        TCGA-96-8170        TCGA-96-A4JK        TCGA-96-A4JL 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-NC-A5HI 
"2Q LOSS WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56V        TCGA-46-3768        TCGA-46-6025 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-5898 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-56-7730        TCGA-56-7822        TCGA-56-8503        TCGA-56-8504 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-56-8622        TCGA-56-8624        TCGA-56-8625        TCGA-56-8626 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-56-A4BY        TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-58-8386        TCGA-58-8387        TCGA-58-8388        TCGA-58-8390 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-58-8391        TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-58-A46K        TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-60-2695        TCGA-60-2696        TCGA-60-2697        TCGA-60-2698 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-60-2703        TCGA-60-2704        TCGA-60-2706        TCGA-60-2707 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-60-2708        TCGA-60-2709        TCGA-60-2710        TCGA-60-2711 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-60-2712        TCGA-60-2713        TCGA-60-2714        TCGA-60-2715 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-60-2716        TCGA-60-2719        TCGA-60-2720        TCGA-60-2721 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-60-2722        TCGA-60-2723        TCGA-60-2724        TCGA-60-2725 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-60-2726        TCGA-66-2727        TCGA-66-2734        TCGA-66-2737 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2753        TCGA-66-2754 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-66-2755        TCGA-66-2756        TCGA-66-2757        TCGA-66-2758 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-66-2759        TCGA-66-2763        TCGA-66-2765        TCGA-66-2766 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-66-2767        TCGA-66-2768        TCGA-66-2769        TCGA-66-2770 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-66-2771        TCGA-66-2773        TCGA-66-2777        TCGA-66-2778 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-66-2780        TCGA-66-2781        TCGA-66-2782        TCGA-66-2783 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-66-2785        TCGA-66-2786        TCGA-66-2787        TCGA-66-2788 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-66-2789        TCGA-66-2790        TCGA-66-2791        TCGA-66-2792 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-66-2793        TCGA-66-2794        TCGA-66-2795        TCGA-66-2800 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-68-7755        TCGA-68-7756        TCGA-68-7757        TCGA-68-8250 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-68-8251        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8007 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED"   "2Q LOSS MUTATED" 
       TCGA-77-8008        TCGA-77-8009        TCGA-77-8128        TCGA-77-8130 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-77-8131        TCGA-77-8133        TCGA-77-8136        TCGA-77-8138 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8140        TCGA-77-8143        TCGA-77-8144 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-77-8145        TCGA-77-8148        TCGA-77-8150        TCGA-77-8153 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ        TCGA-77-A5G3 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6560        TCGA-85-6561 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-7950 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-85-8048        TCGA-85-8049        TCGA-85-8052        TCGA-85-8070 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-85-8071        TCGA-85-8072        TCGA-85-8276        TCGA-85-8277 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-85-8287        TCGA-85-8288        TCGA-85-8350        TCGA-85-8351 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-85-8352        TCGA-85-8353        TCGA-85-8354        TCGA-85-8355 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-85-8479        TCGA-85-8481        TCGA-85-8580        TCGA-85-8582 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-85-8664        TCGA-85-8666        TCGA-85-A4CL        TCGA-85-A4QR 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-85-A50M        TCGA-85-A513        TCGA-85-A53L        TCGA-90-6837 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-90-A4ED        TCGA-90-A4EE        TCGA-92-7340        TCGA-92-7341 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-92-8063        TCGA-92-8064        TCGA-92-8065        TCGA-94-7033 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-94-7557        TCGA-94-7943        TCGA-96-7544        TCGA-96-7545 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-96-8169        TCGA-96-8170        TCGA-96-A4JK        TCGA-96-A4JL 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-NC-A5HI 
"2Q LOSS WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56V        TCGA-46-3768        TCGA-46-6025 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-5898 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-56-7730        TCGA-56-7822        TCGA-56-8503        TCGA-56-8504 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-56-8622        TCGA-56-8624        TCGA-56-8625        TCGA-56-8626 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-56-A4BY        TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-58-8386        TCGA-58-8387        TCGA-58-8388        TCGA-58-8390 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-58-8391        TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-58-A46K        TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-60-2695        TCGA-60-2696        TCGA-60-2697        TCGA-60-2698 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-60-2703        TCGA-60-2704        TCGA-60-2706        TCGA-60-2707 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-60-2708        TCGA-60-2709        TCGA-60-2710        TCGA-60-2711 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-60-2712        TCGA-60-2713        TCGA-60-2714        TCGA-60-2715 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-60-2716        TCGA-60-2719        TCGA-60-2720        TCGA-60-2721 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-60-2722        TCGA-60-2723        TCGA-60-2724        TCGA-60-2725 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-60-2726        TCGA-66-2727        TCGA-66-2734        TCGA-66-2737 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2753        TCGA-66-2754 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-66-2755        TCGA-66-2756        TCGA-66-2757        TCGA-66-2758 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-66-2759        TCGA-66-2763        TCGA-66-2765        TCGA-66-2766 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-66-2767        TCGA-66-2768        TCGA-66-2769        TCGA-66-2770 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-66-2771        TCGA-66-2773        TCGA-66-2777        TCGA-66-2778 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-66-2780        TCGA-66-2781        TCGA-66-2782        TCGA-66-2783 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-66-2785        TCGA-66-2786        TCGA-66-2787        TCGA-66-2788 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-66-2789        TCGA-66-2790        TCGA-66-2791        TCGA-66-2792 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-66-2793        TCGA-66-2794        TCGA-66-2795        TCGA-66-2800 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-68-7755        TCGA-68-7756        TCGA-68-7757        TCGA-68-8250 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-68-8251        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8007 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED"   "2Q LOSS MUTATED" 
       TCGA-77-8008        TCGA-77-8009        TCGA-77-8128        TCGA-77-8130 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-77-8131        TCGA-77-8133        TCGA-77-8136        TCGA-77-8138 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8140        TCGA-77-8143        TCGA-77-8144 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-77-8145        TCGA-77-8148        TCGA-77-8150        TCGA-77-8153 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ        TCGA-77-A5G3 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6560        TCGA-85-6561 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-7950 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-85-8048        TCGA-85-8049        TCGA-85-8052        TCGA-85-8070 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-85-8071        TCGA-85-8072        TCGA-85-8276        TCGA-85-8277 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-85-8287        TCGA-85-8288        TCGA-85-8350        TCGA-85-8351 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-85-8352        TCGA-85-8353        TCGA-85-8354        TCGA-85-8355 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-85-8479        TCGA-85-8481        TCGA-85-8580        TCGA-85-8582 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-85-8664        TCGA-85-8666        TCGA-85-A4CL        TCGA-85-A4QR 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-85-A50M        TCGA-85-A513        TCGA-85-A53L        TCGA-90-6837 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-90-A4ED        TCGA-90-A4EE        TCGA-92-7340        TCGA-92-7341 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-92-8063        TCGA-92-8064        TCGA-92-8065        TCGA-94-7033 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-94-7557        TCGA-94-7943        TCGA-96-7544        TCGA-96-7545 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-96-8169        TCGA-96-8170        TCGA-96-A4JK        TCGA-96-A4JL 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-NC-A5HI 
"2Q LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D44V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  2Q LOSS MUTATED         0        3        8        0         4         6
  2Q LOSS WILD-TYPE       1       65      125        1        46        65
                   vv
clus                STAGE IIIA STAGE IIIB STAGE IV
  2Q LOSS MUTATED            6          2        1
  2Q LOSS WILD-TYPE         48         18        4
D44V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  2Q LOSS MUTATED     5  20   2   3
  2Q LOSS WILD-TYPE  88 230  42  16
D44V4, multiclass
    clus
vv   2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  T1               5                88
  T2              20               230
  T3               2                42
  T4               3                16
                   vv
clus                 N0  N1  N2  N3
  2Q LOSS MUTATED    13  14   2   1
  2Q LOSS WILD-TYPE 240  95  32   4
D44V5, multiclass
    clus
vv   2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  N0              13               240
  N1              14                95
  N2               2                32
  N3               1                 4
                   vv
clus                 M0  M1  MX
  2Q LOSS MUTATED    27   1   2
  2Q LOSS WILD-TYPE 321   4  45
D44V6, multiclass
    clus
vv   2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  M0              27               321
  M1               1                 4
  MX               2                45
D44V7, binary
                   cls
clus                  0   1
  2Q LOSS MUTATED     8  22
  2Q LOSS WILD-TYPE  93 283
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2Q LOSS MUTATED      8   22
  2Q LOSS WILD-TYPE   93  283
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  FEMALE               8                93
  MALE                22               283
D44V8, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  2Q LOSS MUTATED                                       1
  2Q LOSS WILD-TYPE                                    11
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  2Q LOSS MUTATED                                        0
  2Q LOSS WILD-TYPE                                      6
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  2Q LOSS MUTATED                                         0
  2Q LOSS WILD-TYPE                                       1
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  2Q LOSS MUTATED                                                            29
  2Q LOSS WILD-TYPE                                                         358
D44V9, multiclass
                                                             clus
vv                                                            2Q LOSS MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     1
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                    0
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              29
                                                             clus
vv                                                            2Q LOSS WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      11
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                      6
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               358
D44V10, binary
                   cls
clus                  0   1
  2Q LOSS MUTATED     1  29
  2Q LOSS WILD-TYPE  11 365
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2Q LOSS MUTATED      1   29
  2Q LOSS WILD-TYPE   11  365
     clus
vv    2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  NO                1                11
  YES              29               365
D44V11, continuous
D44V12, continuous
                   vv
clus                 R0  R1  R2  RX
  2Q LOSS MUTATED    29   0   0   0
  2Q LOSS WILD-TYPE 301   8   4  18
D44V13, multiclass
    clus
vv   2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  R0              29               301
  R1               0                 8
  R2               0                 4
  RX               0                18

Clustering(45) Variable = 3P LOSS MUTATION ANALYSIS
D45V1, survival
                   sevent
clus2                 0   1
  3P LOSS MUTATED   157  78
  3P LOSS WILD-TYPE  82  60
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
              235               142 
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
               78                60 
$`3P LOSS MUTATED`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07        79.46        46.52        11.34 
TCGA-18-3416 TCGA-18-3417 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 
       28.34        24.92         6.15         2.79        90.51         3.02 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1075 TCGA-21-1077 TCGA-21-1079 TCGA-21-1082 
      119.54        46.88        70.13        34.78        31.69       119.80 
TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 TCGA-21-5786 TCGA-21-5787 TCGA-21-A5DI 
        8.78        31.63        88.08        33.93        10.82        32.19 
TCGA-22-0940 TCGA-22-0944 TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4594 
       19.99         7.33        14.10        27.02        20.45        48.33 
TCGA-22-4599 TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 
       38.17        13.12        32.02        19.30         9.53        11.77 
TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5478 TCGA-22-5479 
       31.73        64.90        63.52        14.60         0.79        54.28 
TCGA-22-5480 TCGA-22-5481 TCGA-22-5482 TCGA-22-5483 TCGA-22-5492 TCGA-22-A5C4 
       71.34        79.20        11.74        18.84        16.60         0.95 
TCGA-33-4532 TCGA-33-4583 TCGA-33-4587 TCGA-33-4589 TCGA-33-6738 TCGA-34-2596 
        7.63       141.34        54.44        10.98        26.99         2.63 
TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 TCGA-34-5231 TCGA-34-5239 
       61.61        31.50        28.96        32.84        50.24        23.24 
TCGA-34-5927 TCGA-34-5929 TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 
       30.94         4.96         6.54         8.09         7.46         7.82 
TCGA-37-4141 TCGA-37-5819 TCGA-39-5011 TCGA-39-5016 TCGA-39-5024 TCGA-39-5027 
        0.39         3.39        47.80        74.07        70.03        60.76 
TCGA-39-5028 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-43-2576 TCGA-43-2581 
        1.71        27.35        15.58        35.64        40.21        38.66 
TCGA-43-3920 TCGA-43-6143 TCGA-43-6770 TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 
       33.07        12.36        10.19         6.97         1.58        66.51 
TCGA-43-8115 TCGA-43-8116 TCGA-43-8118 TCGA-43-A474 TCGA-51-4079 TCGA-51-4080 
        6.64         6.35         2.93        11.61         0.39         0.39 
TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 
       29.95        17.79         5.42         8.75        27.45        28.93 
TCGA-56-5897 TCGA-56-6545 TCGA-56-7221 TCGA-56-7222 TCGA-56-7579 TCGA-56-7580 
        0.10         2.04         0.99         0.43         1.45         1.32 
TCGA-56-7582 TCGA-56-7822 TCGA-56-8503 TCGA-56-8504 TCGA-56-8624 TCGA-56-8626 
        0.85         0.03         1.35         5.82         1.18         0.56 
TCGA-56-8628 TCGA-56-8629 TCGA-56-A4BX TCGA-56-A4BY TCGA-56-A4ZJ TCGA-56-A5DS 
        0.53         1.12         1.51         0.99         1.02         0.26 
TCGA-58-8386 TCGA-58-8388 TCGA-58-8390 TCGA-58-8391 TCGA-60-2695 TCGA-60-2696 
        0.03        12.43        29.95        71.24        21.07         3.58 
TCGA-60-2698 TCGA-60-2704 TCGA-60-2707 TCGA-60-2708 TCGA-60-2710 TCGA-60-2711 
       10.22        37.94        21.70        80.42        66.51        41.39 
TCGA-60-2712 TCGA-60-2719 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 
        9.01        42.61        32.28        29.85        35.90        23.57 
TCGA-60-2725 TCGA-60-2726 TCGA-66-2734 TCGA-66-2742 TCGA-66-2754 TCGA-66-2755 
       26.79        11.77        43.10        21.07         2.01         0.92 
TCGA-66-2757 TCGA-66-2758 TCGA-66-2763 TCGA-66-2765 TCGA-66-2767 TCGA-66-2768 
        0.99        20.98         0.99         2.01         2.01         2.01 
TCGA-66-2769 TCGA-66-2770 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 
        7.07        23.01        19.00        12.03         3.98        12.00 
TCGA-66-2783 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2790 TCGA-66-2791 
       24.95        25.97        40.01        22.98        22.98         5.03 
TCGA-66-2792 TCGA-66-2793 TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 
       30.02        10.06         4.01        49.05         2.73         6.64 
TCGA-68-7757 TCGA-68-8250 TCGA-68-8251 TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 
        6.94         8.02         3.12        29.56        73.08        75.09 
TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 
       23.28        11.18        89.95         0.49        42.25        70.09 
TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 TCGA-77-8128 TCGA-77-8130 
      106.95         0.16        46.78        15.75        37.81        82.92 
TCGA-77-8133 TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 TCGA-77-8143 TCGA-77-8144 
       53.92        17.69       104.09        11.54        26.40        27.39 
TCGA-77-8148 TCGA-77-8153 TCGA-77-8154 TCGA-77-8156 TCGA-77-A5G3 TCGA-77-A5GH 
        9.63        55.33        35.90         0.33       117.57        23.44 
TCGA-85-6560 TCGA-85-7697 TCGA-85-7698 TCGA-85-7699 TCGA-85-7844 TCGA-85-7950 
        0.36         0.33         1.61         0.03         1.25         1.97 
TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 TCGA-85-8277 TCGA-85-8288 
        0.53        16.77        14.07         1.18         0.36         1.78 
TCGA-85-8351 TCGA-85-8353 TCGA-85-8355 TCGA-85-8479 TCGA-85-8481 TCGA-85-8666 
        1.81         1.78         0.66         0.72         0.66        15.58 
TCGA-85-A4CL TCGA-85-A4QR TCGA-85-A53L TCGA-90-7766 TCGA-90-7767 TCGA-90-7964 
        0.46         0.82         0.43         9.50         2.93        14.07 
TCGA-90-A4ED TCGA-90-A4EE TCGA-92-7341 TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 
        8.02        10.88         3.48         4.01         5.26         2.27 
TCGA-94-7557 TCGA-96-7544 TCGA-96-8169 TCGA-96-8170 TCGA-96-A4JK TCGA-98-8021 
        0.16        39.88         6.18         6.90         8.98        13.58 
TCGA-98-8023 TCGA-L3-A4E7 TCGA-LA-A446 TCGA-MF-A522 TCGA-NC-A5HE TCGA-NC-A5HG 
       10.13         1.15         1.18         3.02        56.61        50.86 
TCGA-NC-A5HI 
       37.32 

$`3P LOSS WILD-TYPE`
TCGA-18-3410 TCGA-18-3414 TCGA-18-3415 TCGA-18-3419 TCGA-18-3421 TCGA-18-5595 
        4.80        13.02        59.51         1.61        43.76        27.16 
TCGA-21-1072 TCGA-21-1076 TCGA-21-1078 TCGA-21-1080 TCGA-21-1081 TCGA-21-5784 
       99.16        60.89        15.55       122.43         9.30        41.69 
TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 TCGA-22-1017 TCGA-22-4593 
       14.93         4.31        64.21         1.74        48.82        35.08 
TCGA-22-4595 TCGA-22-4596 TCGA-22-4601 TCGA-22-5477 TCGA-22-5485 TCGA-22-5489 
       24.13         0.56        34.75        44.22        30.08        62.86 
TCGA-22-5491 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 
       56.32       114.05        97.94        43.10       173.79       103.53 
TCGA-33-4586 TCGA-33-6737 TCGA-34-2609 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 
       14.07        19.76        31.23        67.79        56.38         9.04 
TCGA-34-5240 TCGA-34-5241 TCGA-34-5928 TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 
       12.00        14.07        18.12         1.08         3.95         0.43 
TCGA-37-3792 TCGA-37-4135 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5029 
        0.39         6.81        44.71        68.58        55.17        24.33 
TCGA-39-5030 TCGA-39-5034 TCGA-39-5037 TCGA-39-5039 TCGA-39-5040 TCGA-43-2578 
        1.94        36.39        35.70        17.88        17.06        22.49 
TCGA-43-3394 TCGA-43-5668 TCGA-43-5670 TCGA-43-6647 TCGA-43-6771 TCGA-43-6773 
       27.02        11.47        18.05        24.89         5.42         3.78 
TCGA-43-A475 TCGA-43-A56V TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-52-7810 
        9.73         5.06         9.96        10.65        13.87        30.31 
TCGA-56-5898 TCGA-56-6546 TCGA-56-7223 TCGA-56-7730 TCGA-56-8622 TCGA-56-8625 
       18.25         1.02         0.99         0.20         1.78         2.07 
TCGA-56-A49D TCGA-56-A4ZK TCGA-58-8387 TCGA-58-8392 TCGA-58-8393 TCGA-58-A46J 
        0.99         0.13        13.25        16.47        34.78        64.87 
TCGA-58-A46K TCGA-58-A46L TCGA-58-A46M TCGA-58-A46N TCGA-60-2697 TCGA-60-2703 
       34.36        36.59        23.24        17.72        12.23        96.82 
TCGA-60-2706 TCGA-60-2709 TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 
       92.71        49.48        56.91        50.33        35.34        48.49 
TCGA-60-2720 TCGA-66-2727 TCGA-66-2737 TCGA-66-2744 TCGA-66-2753 TCGA-66-2756 
        3.16        16.96         2.01         0.99         1.02         0.99 
TCGA-66-2759 TCGA-66-2766 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2785 
       25.02         1.02        19.00         3.02         2.01         1.94 
TCGA-66-2789 TCGA-66-2794 TCGA-77-7140 TCGA-77-8007 TCGA-77-8008 TCGA-77-8009 
        4.04        54.08        20.78         6.51        86.76        53.95 
TCGA-77-8131 TCGA-77-8136 TCGA-77-8145 TCGA-77-8150 TCGA-77-A5FZ TCGA-77-A5GB 
       12.59        39.09         6.97        54.41       126.18        30.81 
TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 TCGA-85-7843 TCGA-85-8048 TCGA-85-8049 
        0.79         1.12         0.59         1.15         0.85         1.97 
TCGA-85-8276 TCGA-85-8287 TCGA-85-8350 TCGA-85-8352 TCGA-85-8354 TCGA-85-8580 
        0.43         1.45         1.97         2.20         2.01        14.60 
TCGA-85-8582 TCGA-85-8664 TCGA-85-A50M TCGA-85-A513 TCGA-90-6837 TCGA-90-7769 
       13.91         0.10         0.62         0.79        24.89        11.77 
TCGA-92-7340 TCGA-94-7033 TCGA-94-7943 TCGA-96-7545 TCGA-96-A4JL TCGA-98-7454 
        2.70         2.86        11.70        44.15         6.02         8.42 
TCGA-98-8020 TCGA-98-8022 TCGA-J1-A4AH TCGA-L3-A524 
        2.73         7.33         7.30        14.76 

  3P LOSS MUTATED 3P LOSS WILD-TYPE 
             0.03              0.10 
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
           141.34            173.79 
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
           12.160            14.335 
[1] "0.0 - 141.3 (12.2)" "0.1 - 173.8 (14.3)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-43-A475        TCGA-43-A56V        TCGA-46-3768        TCGA-46-6025 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-5898 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-56-7730        TCGA-56-7822        TCGA-56-8503        TCGA-56-8504 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-56-8622        TCGA-56-8624        TCGA-56-8625        TCGA-56-8626 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-56-A4BY        TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-58-8386        TCGA-58-8387        TCGA-58-8388        TCGA-58-8390 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-58-8391        TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-58-A46K        TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-60-2695        TCGA-60-2696        TCGA-60-2697        TCGA-60-2698 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-60-2703        TCGA-60-2704        TCGA-60-2706        TCGA-60-2707 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-60-2708        TCGA-60-2709        TCGA-60-2710        TCGA-60-2711 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-60-2712        TCGA-60-2713        TCGA-60-2714        TCGA-60-2715 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-60-2716        TCGA-60-2719        TCGA-60-2720        TCGA-60-2721 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-60-2722        TCGA-60-2723        TCGA-60-2724        TCGA-60-2725 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-60-2726        TCGA-66-2727        TCGA-66-2734        TCGA-66-2737 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2753        TCGA-66-2754 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-66-2755        TCGA-66-2756        TCGA-66-2757        TCGA-66-2758 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-66-2759        TCGA-66-2763        TCGA-66-2765        TCGA-66-2766 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-66-2767        TCGA-66-2768        TCGA-66-2769        TCGA-66-2770 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-66-2771        TCGA-66-2773        TCGA-66-2777        TCGA-66-2778 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-66-2780        TCGA-66-2781        TCGA-66-2782        TCGA-66-2783 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-66-2785        TCGA-66-2786        TCGA-66-2787        TCGA-66-2788 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-66-2789        TCGA-66-2790        TCGA-66-2791        TCGA-66-2792 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-66-2793        TCGA-66-2794        TCGA-66-2795        TCGA-66-2800 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-68-7755        TCGA-68-7756        TCGA-68-7757        TCGA-68-8250 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-68-8251        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8007 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-77-8008        TCGA-77-8009        TCGA-77-8128        TCGA-77-8130 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-77-8131        TCGA-77-8133        TCGA-77-8136        TCGA-77-8138 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-77-8139        TCGA-77-8140        TCGA-77-8143        TCGA-77-8144 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-77-8145        TCGA-77-8148        TCGA-77-8150        TCGA-77-8153 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ        TCGA-77-A5G3 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6560        TCGA-85-6561 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-7950 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-85-8048        TCGA-85-8049        TCGA-85-8052        TCGA-85-8070 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-85-8071        TCGA-85-8072        TCGA-85-8276        TCGA-85-8277 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-85-8287        TCGA-85-8288        TCGA-85-8350        TCGA-85-8351 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-85-8352        TCGA-85-8353        TCGA-85-8354        TCGA-85-8355 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-85-8479        TCGA-85-8481        TCGA-85-8580        TCGA-85-8582 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-85-8664        TCGA-85-8666        TCGA-85-A4CL        TCGA-85-A4QR 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-85-A50M        TCGA-85-A513        TCGA-85-A53L        TCGA-90-6837 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-90-A4ED        TCGA-90-A4EE        TCGA-92-7340        TCGA-92-7341 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-92-8063        TCGA-92-8064        TCGA-92-8065        TCGA-94-7033 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-94-7557        TCGA-94-7943        TCGA-96-7544        TCGA-96-7545 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-96-8169        TCGA-96-8170        TCGA-96-A4JK        TCGA-96-A4JL 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-NC-A5HI 
  "3P LOSS MUTATED" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-43-A475        TCGA-43-A56V        TCGA-46-3768        TCGA-46-6025 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-5898 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-56-7730        TCGA-56-7822        TCGA-56-8503        TCGA-56-8504 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-56-8622        TCGA-56-8624        TCGA-56-8625        TCGA-56-8626 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-56-A4BY        TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-58-8386        TCGA-58-8387        TCGA-58-8388        TCGA-58-8390 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-58-8391        TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-58-A46K        TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-60-2695        TCGA-60-2696        TCGA-60-2697        TCGA-60-2698 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-60-2703        TCGA-60-2704        TCGA-60-2706        TCGA-60-2707 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-60-2708        TCGA-60-2709        TCGA-60-2710        TCGA-60-2711 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-60-2712        TCGA-60-2713        TCGA-60-2714        TCGA-60-2715 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-60-2716        TCGA-60-2719        TCGA-60-2720        TCGA-60-2721 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-60-2722        TCGA-60-2723        TCGA-60-2724        TCGA-60-2725 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-60-2726        TCGA-66-2727        TCGA-66-2734        TCGA-66-2737 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2753        TCGA-66-2754 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-66-2755        TCGA-66-2756        TCGA-66-2757        TCGA-66-2758 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-66-2759        TCGA-66-2763        TCGA-66-2765        TCGA-66-2766 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-66-2767        TCGA-66-2768        TCGA-66-2769        TCGA-66-2770 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-66-2771        TCGA-66-2773        TCGA-66-2777        TCGA-66-2778 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-66-2780        TCGA-66-2781        TCGA-66-2782        TCGA-66-2783 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-66-2785        TCGA-66-2786        TCGA-66-2787        TCGA-66-2788 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-66-2789        TCGA-66-2790        TCGA-66-2791        TCGA-66-2792 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-66-2793        TCGA-66-2794        TCGA-66-2795        TCGA-66-2800 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-68-7755        TCGA-68-7756        TCGA-68-7757        TCGA-68-8250 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-68-8251        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8007 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-77-8008        TCGA-77-8009        TCGA-77-8128        TCGA-77-8130 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-77-8131        TCGA-77-8133        TCGA-77-8136        TCGA-77-8138 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-77-8139        TCGA-77-8140        TCGA-77-8143        TCGA-77-8144 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-77-8145        TCGA-77-8148        TCGA-77-8150        TCGA-77-8153 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ        TCGA-77-A5G3 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6560        TCGA-85-6561 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-7950 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-85-8048        TCGA-85-8049        TCGA-85-8052        TCGA-85-8070 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-85-8071        TCGA-85-8072        TCGA-85-8276        TCGA-85-8277 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-85-8287        TCGA-85-8288        TCGA-85-8350        TCGA-85-8351 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-85-8352        TCGA-85-8353        TCGA-85-8354        TCGA-85-8355 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-85-8479        TCGA-85-8481        TCGA-85-8580        TCGA-85-8582 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-85-8664        TCGA-85-8666        TCGA-85-A4CL        TCGA-85-A4QR 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-85-A50M        TCGA-85-A513        TCGA-85-A53L        TCGA-90-6837 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-90-A4ED        TCGA-90-A4EE        TCGA-92-7340        TCGA-92-7341 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-92-8063        TCGA-92-8064        TCGA-92-8065        TCGA-94-7033 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-94-7557        TCGA-94-7943        TCGA-96-7544        TCGA-96-7545 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-96-8169        TCGA-96-8170        TCGA-96-A4JK        TCGA-96-A4JL 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-NC-A5HI 
  "3P LOSS MUTATED" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-43-A475        TCGA-43-A56V        TCGA-46-3768        TCGA-46-6025 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-5898 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-56-7730        TCGA-56-7822        TCGA-56-8503        TCGA-56-8504 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-56-8622        TCGA-56-8624        TCGA-56-8625        TCGA-56-8626 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-56-A4BY        TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-58-8386        TCGA-58-8387        TCGA-58-8388        TCGA-58-8390 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-58-8391        TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-58-A46K        TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-60-2695        TCGA-60-2696        TCGA-60-2697        TCGA-60-2698 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-60-2703        TCGA-60-2704        TCGA-60-2706        TCGA-60-2707 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-60-2708        TCGA-60-2709        TCGA-60-2710        TCGA-60-2711 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-60-2712        TCGA-60-2713        TCGA-60-2714        TCGA-60-2715 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-60-2716        TCGA-60-2719        TCGA-60-2720        TCGA-60-2721 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-60-2722        TCGA-60-2723        TCGA-60-2724        TCGA-60-2725 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-60-2726        TCGA-66-2727        TCGA-66-2734        TCGA-66-2737 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2753        TCGA-66-2754 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-66-2755        TCGA-66-2756        TCGA-66-2757        TCGA-66-2758 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-66-2759        TCGA-66-2763        TCGA-66-2765        TCGA-66-2766 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-66-2767        TCGA-66-2768        TCGA-66-2769        TCGA-66-2770 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-66-2771        TCGA-66-2773        TCGA-66-2777        TCGA-66-2778 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-66-2780        TCGA-66-2781        TCGA-66-2782        TCGA-66-2783 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-66-2785        TCGA-66-2786        TCGA-66-2787        TCGA-66-2788 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-66-2789        TCGA-66-2790        TCGA-66-2791        TCGA-66-2792 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-66-2793        TCGA-66-2794        TCGA-66-2795        TCGA-66-2800 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-68-7755        TCGA-68-7756        TCGA-68-7757        TCGA-68-8250 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-68-8251        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8007 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-77-8008        TCGA-77-8009        TCGA-77-8128        TCGA-77-8130 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-77-8131        TCGA-77-8133        TCGA-77-8136        TCGA-77-8138 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-77-8139        TCGA-77-8140        TCGA-77-8143        TCGA-77-8144 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-77-8145        TCGA-77-8148        TCGA-77-8150        TCGA-77-8153 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ        TCGA-77-A5G3 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6560        TCGA-85-6561 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-7950 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-85-8048        TCGA-85-8049        TCGA-85-8052        TCGA-85-8070 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-85-8071        TCGA-85-8072        TCGA-85-8276        TCGA-85-8277 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-85-8287        TCGA-85-8288        TCGA-85-8350        TCGA-85-8351 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-85-8352        TCGA-85-8353        TCGA-85-8354        TCGA-85-8355 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-85-8479        TCGA-85-8481        TCGA-85-8580        TCGA-85-8582 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-85-8664        TCGA-85-8666        TCGA-85-A4CL        TCGA-85-A4QR 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-85-A50M        TCGA-85-A513        TCGA-85-A53L        TCGA-90-6837 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-90-A4ED        TCGA-90-A4EE        TCGA-92-7340        TCGA-92-7341 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-92-8063        TCGA-92-8064        TCGA-92-8065        TCGA-94-7033 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-94-7557        TCGA-94-7943        TCGA-96-7544        TCGA-96-7545 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-96-8169        TCGA-96-8170        TCGA-96-A4JK        TCGA-96-A4JL 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-NC-A5HI 
  "3P LOSS MUTATED" 
[1] "hr=" "1.2"
D45V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  3P LOSS MUTATED         1       42       88        0        29        41
  3P LOSS WILD-TYPE       0       26       45        1        21        30
                   vv
clus                STAGE IIIA STAGE IIIB STAGE IV
  3P LOSS MUTATED           31         13        4
  3P LOSS WILD-TYPE         23          7        1
D45V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  3P LOSS MUTATED    59 153  28  12
  3P LOSS WILD-TYPE  34  97  16   7
D45V4, multiclass
    clus
vv   3P LOSS MUTATED 3P LOSS WILD-TYPE
  T1              59                34
  T2             153                97
  T3              28                16
  T4              12                 7
                   vv
clus                 N0  N1  N2  N3
  3P LOSS MUTATED   162  68  17   4
  3P LOSS WILD-TYPE  91  41  17   1
D45V5, multiclass
    clus
vv   3P LOSS MUTATED 3P LOSS WILD-TYPE
  N0             162                91
  N1              68                41
  N2              17                17
  N3               4                 1
                   vv
clus                 M0  M1  MX
  3P LOSS MUTATED   213   4  31
  3P LOSS WILD-TYPE 135   1  16
D45V6, multiclass
    clus
vv   3P LOSS MUTATED 3P LOSS WILD-TYPE
  M0             213               135
  M1               4                 1
  MX              31                16
D45V7, binary
                   cls
clus                  0   1
  3P LOSS MUTATED    68 184
  3P LOSS WILD-TYPE  33 121
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3P LOSS MUTATED     68  184
  3P LOSS WILD-TYPE   33  121
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  FEMALE              68                33
  MALE               184               121
D45V8, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  3P LOSS MUTATED                                       8
  3P LOSS WILD-TYPE                                     4
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  3P LOSS MUTATED                                        3
  3P LOSS WILD-TYPE                                      3
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  3P LOSS MUTATED                                         1
  3P LOSS WILD-TYPE                                       0
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  3P LOSS MUTATED                                                           240
  3P LOSS WILD-TYPE                                                         147
D45V9, multiclass
                                                             clus
vv                                                            3P LOSS MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     8
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                    3
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                   1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             240
                                                             clus
vv                                                            3P LOSS WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       4
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                      3
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                     0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               147
D45V10, binary
                   cls
clus                  0   1
  3P LOSS MUTATED     9 243
  3P LOSS WILD-TYPE   3 151
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3P LOSS MUTATED      9  243
  3P LOSS WILD-TYPE    3  151
     clus
vv    3P LOSS MUTATED 3P LOSS WILD-TYPE
  NO                9                 3
  YES             243               151
D45V11, continuous
D45V12, continuous
                   vv
clus                 R0  R1  R2  RX
  3P LOSS MUTATED   206   3   3  11
  3P LOSS WILD-TYPE 124   5   1   7
D45V13, multiclass
    clus
vv   3P LOSS MUTATED 3P LOSS WILD-TYPE
  R0             206               124
  R1               3                 5
  R2               3                 1
  RX              11                 7

Clustering(46) Variable = 3Q LOSS MUTATION ANALYSIS
D46V1, survival
                   sevent
clus2                 0   1
  3Q LOSS MUTATED    34  21
  3Q LOSS WILD-TYPE 205 117
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
               55               322 
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
               21               117 
$`3Q LOSS MUTATED`
TCGA-18-3408 TCGA-18-3412 TCGA-18-3416 TCGA-18-5592 TCGA-21-1075 TCGA-21-1079 
       81.07        11.34        28.34         3.02        70.13        31.69 
TCGA-21-1082 TCGA-22-0944 TCGA-22-1016 TCGA-22-4594 TCGA-22-4604 TCGA-22-5483 
      119.80         7.33        27.02        48.33        13.12        18.84 
TCGA-22-5492 TCGA-33-4583 TCGA-33-6738 TCGA-34-5929 TCGA-37-4129 TCGA-39-5011 
       16.60       141.34        26.99         4.96         6.54        47.80 
TCGA-39-5027 TCGA-43-2581 TCGA-43-A474 TCGA-52-7811 TCGA-56-1622 TCGA-56-7221 
       60.76        38.66        11.61         8.75        28.93         0.99 
TCGA-56-7579 TCGA-56-7582 TCGA-56-8503 TCGA-58-8388 TCGA-60-2696 TCGA-60-2698 
        1.45         0.85         1.35        12.43         3.58        10.22 
TCGA-60-2722 TCGA-66-2754 TCGA-66-2757 TCGA-66-2769 TCGA-66-2782 TCGA-66-2788 
       29.85         2.01         0.99         7.07        12.00        22.98 
TCGA-66-2791 TCGA-66-2793 TCGA-66-2795 TCGA-77-6843 TCGA-77-6844 TCGA-77-8130 
        5.03        10.06         4.01        73.08        75.09        82.92 
TCGA-77-8154 TCGA-85-7698 TCGA-85-8070 TCGA-85-8071 TCGA-85-8355 TCGA-85-8481 
       35.90         1.61        16.77        14.07         0.66         0.66 
TCGA-85-A53L TCGA-90-A4ED TCGA-92-7341 TCGA-94-7557 TCGA-96-8169 TCGA-98-8023 
        0.43         8.02         3.48         0.16         6.18        10.13 
TCGA-NC-A5HE 
       56.61 

$`3Q LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 TCGA-18-3414 
       12.16         4.47        79.46         4.80        46.52        13.02 
TCGA-18-3415 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 
       59.51        24.92         1.61        43.76         6.15         2.79 
TCGA-18-4721 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 TCGA-21-1072 TCGA-21-1076 
       90.51        27.16       119.54        46.88        99.16        60.89 
TCGA-21-1077 TCGA-21-1078 TCGA-21-1080 TCGA-21-1081 TCGA-21-1083 TCGA-21-5782 
       34.78        15.55       122.43         9.30         8.78        31.63 
TCGA-21-5783 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-21-A5DI TCGA-22-0940 
       88.08        41.69        33.93        10.82        32.19        19.99 
TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-1017 
       14.93         4.31        64.21         1.74        14.10        48.82 
TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 TCGA-22-4601 
       20.45        35.08        24.13         0.56        38.17        34.75 
TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 
       32.02        19.30         9.53        11.77        31.73        64.90 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 
       63.52        14.60        44.22         0.79        54.28        71.34 
TCGA-22-5481 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-A5C4 
       79.20        11.74        30.08        62.86        56.32         0.95 
TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 
        7.63       114.05        97.94        43.10       173.79       103.53 
TCGA-33-4586 TCGA-33-4587 TCGA-33-4589 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 
       14.07        54.44        10.98        19.76         2.63        61.61 
TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 TCGA-34-5232 
       31.50        28.96        32.84        31.23        50.24        67.79 
TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 
       56.38         9.04        23.24        12.00        14.07        30.94 
TCGA-34-5928 TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 TCGA-37-4130 
       18.12         1.08         3.95         0.43         0.39         8.09 
TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 
        7.46         7.82         6.81         0.39         3.39        74.07 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5028 TCGA-39-5029 
       44.71        68.58        55.17        70.03         1.71        24.33 
TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 
        1.94        27.35        36.39        15.58        35.64        35.70 
TCGA-39-5039 TCGA-39-5040 TCGA-43-2576 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 
       17.88        17.06        40.21        22.49        27.02        33.07 
TCGA-43-5668 TCGA-43-5670 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 
       11.47        18.05        12.36        24.89        10.19         5.42 
TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 
        3.78         6.97         1.58        66.51         6.64         6.35 
TCGA-43-8118 TCGA-43-A475 TCGA-43-A56V TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 
        2.93         9.73         5.06         9.96        10.65        13.87 
TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 TCGA-52-7810 
        0.39         0.39        29.95        17.79         5.42        30.31 
TCGA-52-7812 TCGA-56-5897 TCGA-56-5898 TCGA-56-6545 TCGA-56-6546 TCGA-56-7222 
       27.45         0.10        18.25         2.04         1.02         0.43 
TCGA-56-7223 TCGA-56-7580 TCGA-56-7730 TCGA-56-7822 TCGA-56-8504 TCGA-56-8622 
        0.99         1.32         0.20         0.03         5.82         1.78 
TCGA-56-8624 TCGA-56-8625 TCGA-56-8626 TCGA-56-8628 TCGA-56-8629 TCGA-56-A49D 
        1.18         2.07         0.56         0.53         1.12         0.99 
TCGA-56-A4BX TCGA-56-A4BY TCGA-56-A4ZJ TCGA-56-A4ZK TCGA-56-A5DS TCGA-58-8386 
        1.51         0.99         1.02         0.13         0.26         0.03 
TCGA-58-8387 TCGA-58-8390 TCGA-58-8391 TCGA-58-8392 TCGA-58-8393 TCGA-58-A46J 
       13.25        29.95        71.24        16.47        34.78        64.87 
TCGA-58-A46K TCGA-58-A46L TCGA-58-A46M TCGA-58-A46N TCGA-60-2695 TCGA-60-2697 
       34.36        36.59        23.24        17.72        21.07        12.23 
TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 
       96.82        37.94        92.71        21.70        80.42        49.48 
TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 
       66.51        41.39         9.01        56.91        50.33        35.34 
TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2723 TCGA-60-2724 
       48.49        42.61         3.16        32.28        35.90        23.57 
TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 
       26.79        11.77        16.96        43.10         2.01        21.07 
TCGA-66-2744 TCGA-66-2753 TCGA-66-2755 TCGA-66-2756 TCGA-66-2758 TCGA-66-2759 
        0.99         1.02         0.92         0.99        20.98        25.02 
TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 
        0.99         2.01         1.02         2.01         2.01        23.01 
TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 
       19.00         3.02         2.01        19.00        12.03         3.98 
TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2789 TCGA-66-2790 
       24.95         1.94        25.97        40.01         4.04        22.98 
TCGA-66-2792 TCGA-66-2794 TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 TCGA-68-7757 
       30.02        54.08        49.05         2.73         6.64         6.94 
TCGA-68-8250 TCGA-68-8251 TCGA-77-6842 TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 
        8.02         3.12        29.56        23.28        11.18        89.95 
TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 
       20.78         0.49        42.25        70.09       106.95         0.16 
TCGA-77-7463 TCGA-77-7465 TCGA-77-8007 TCGA-77-8008 TCGA-77-8009 TCGA-77-8128 
       46.78        15.75         6.51        86.76        53.95        37.81 
TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 
       12.59        53.92        39.09        17.69       104.09        11.54 
TCGA-77-8143 TCGA-77-8144 TCGA-77-8145 TCGA-77-8148 TCGA-77-8150 TCGA-77-8153 
       26.40        27.39         6.97         9.63        54.41        55.33 
TCGA-77-8156 TCGA-77-A5FZ TCGA-77-A5G3 TCGA-77-A5GB TCGA-77-A5GH TCGA-85-6560 
        0.33       126.18       117.57        30.81        23.44         0.36 
TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 TCGA-85-7697 TCGA-85-7699 TCGA-85-7843 
        0.79         1.12         0.59         0.33         0.03         1.15 
TCGA-85-7844 TCGA-85-7950 TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 TCGA-85-8072 
        1.25         1.97         0.85         1.97         0.53         1.18 
TCGA-85-8276 TCGA-85-8277 TCGA-85-8287 TCGA-85-8288 TCGA-85-8350 TCGA-85-8351 
        0.43         0.36         1.45         1.78         1.97         1.81 
TCGA-85-8352 TCGA-85-8353 TCGA-85-8354 TCGA-85-8479 TCGA-85-8580 TCGA-85-8582 
        2.20         1.78         2.01         0.72        14.60        13.91 
TCGA-85-8664 TCGA-85-8666 TCGA-85-A4CL TCGA-85-A4QR TCGA-85-A50M TCGA-85-A513 
        0.10        15.58         0.46         0.82         0.62         0.79 
TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 TCGA-90-7769 TCGA-90-7964 TCGA-90-A4EE 
       24.89         9.50         2.93        11.77        14.07        10.88 
TCGA-92-7340 TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 TCGA-94-7943 
        2.70         4.01         5.26         2.27         2.86        11.70 
TCGA-96-7544 TCGA-96-7545 TCGA-96-8170 TCGA-96-A4JK TCGA-96-A4JL TCGA-98-7454 
       39.88        44.15         6.90         8.98         6.02         8.42 
TCGA-98-8020 TCGA-98-8021 TCGA-98-8022 TCGA-J1-A4AH TCGA-L3-A4E7 TCGA-L3-A524 
        2.73        13.58         7.33         7.30         1.15        14.76 
TCGA-LA-A446 TCGA-MF-A522 TCGA-NC-A5HG TCGA-NC-A5HI 
        1.18         3.02        50.86        37.32 

  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
             0.16              0.03 
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
           141.34            173.79 
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
            11.61             14.07 
[1] "0.2 - 141.3 (11.6)" "0.0 - 173.8 (14.1)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-43-A475        TCGA-43-A56V        TCGA-46-3768        TCGA-46-6025 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-5898 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-56-7730        TCGA-56-7822        TCGA-56-8503        TCGA-56-8504 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-56-8622        TCGA-56-8624        TCGA-56-8625        TCGA-56-8626 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-56-A4BY        TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-58-8386        TCGA-58-8387        TCGA-58-8388        TCGA-58-8390 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-58-8391        TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-58-A46K        TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-60-2695        TCGA-60-2696        TCGA-60-2697        TCGA-60-2698 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-60-2703        TCGA-60-2704        TCGA-60-2706        TCGA-60-2707 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-60-2708        TCGA-60-2709        TCGA-60-2710        TCGA-60-2711 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-60-2712        TCGA-60-2713        TCGA-60-2714        TCGA-60-2715 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-60-2716        TCGA-60-2719        TCGA-60-2720        TCGA-60-2721 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-60-2722        TCGA-60-2723        TCGA-60-2724        TCGA-60-2725 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-60-2726        TCGA-66-2727        TCGA-66-2734        TCGA-66-2737 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2753        TCGA-66-2754 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-66-2755        TCGA-66-2756        TCGA-66-2757        TCGA-66-2758 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-66-2759        TCGA-66-2763        TCGA-66-2765        TCGA-66-2766 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-66-2767        TCGA-66-2768        TCGA-66-2769        TCGA-66-2770 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-66-2771        TCGA-66-2773        TCGA-66-2777        TCGA-66-2778 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-66-2780        TCGA-66-2781        TCGA-66-2782        TCGA-66-2783 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-66-2785        TCGA-66-2786        TCGA-66-2787        TCGA-66-2788 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-66-2789        TCGA-66-2790        TCGA-66-2791        TCGA-66-2792 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-66-2793        TCGA-66-2794        TCGA-66-2795        TCGA-66-2800 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-68-7755        TCGA-68-7756        TCGA-68-7757        TCGA-68-8250 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-68-8251        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED"   "3Q LOSS MUTATED" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8007 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-77-8008        TCGA-77-8009        TCGA-77-8128        TCGA-77-8130 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-77-8131        TCGA-77-8133        TCGA-77-8136        TCGA-77-8138 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8140        TCGA-77-8143        TCGA-77-8144 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-77-8145        TCGA-77-8148        TCGA-77-8150        TCGA-77-8153 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ        TCGA-77-A5G3 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6560        TCGA-85-6561 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-7950 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-85-8048        TCGA-85-8049        TCGA-85-8052        TCGA-85-8070 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-85-8071        TCGA-85-8072        TCGA-85-8276        TCGA-85-8277 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-85-8287        TCGA-85-8288        TCGA-85-8350        TCGA-85-8351 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-85-8352        TCGA-85-8353        TCGA-85-8354        TCGA-85-8355 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-85-8479        TCGA-85-8481        TCGA-85-8580        TCGA-85-8582 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-85-8664        TCGA-85-8666        TCGA-85-A4CL        TCGA-85-A4QR 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-85-A50M        TCGA-85-A513        TCGA-85-A53L        TCGA-90-6837 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-90-A4ED        TCGA-90-A4EE        TCGA-92-7340        TCGA-92-7341 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-92-8063        TCGA-92-8064        TCGA-92-8065        TCGA-94-7033 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-94-7557        TCGA-94-7943        TCGA-96-7544        TCGA-96-7545 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-96-8169        TCGA-96-8170        TCGA-96-A4JK        TCGA-96-A4JL 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-NC-A5HI 
"3Q LOSS WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-43-A475        TCGA-43-A56V        TCGA-46-3768        TCGA-46-6025 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-5898 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-56-7730        TCGA-56-7822        TCGA-56-8503        TCGA-56-8504 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-56-8622        TCGA-56-8624        TCGA-56-8625        TCGA-56-8626 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-56-A4BY        TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-58-8386        TCGA-58-8387        TCGA-58-8388        TCGA-58-8390 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-58-8391        TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-58-A46K        TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-60-2695        TCGA-60-2696        TCGA-60-2697        TCGA-60-2698 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-60-2703        TCGA-60-2704        TCGA-60-2706        TCGA-60-2707 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-60-2708        TCGA-60-2709        TCGA-60-2710        TCGA-60-2711 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-60-2712        TCGA-60-2713        TCGA-60-2714        TCGA-60-2715 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-60-2716        TCGA-60-2719        TCGA-60-2720        TCGA-60-2721 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-60-2722        TCGA-60-2723        TCGA-60-2724        TCGA-60-2725 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-60-2726        TCGA-66-2727        TCGA-66-2734        TCGA-66-2737 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2753        TCGA-66-2754 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-66-2755        TCGA-66-2756        TCGA-66-2757        TCGA-66-2758 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-66-2759        TCGA-66-2763        TCGA-66-2765        TCGA-66-2766 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-66-2767        TCGA-66-2768        TCGA-66-2769        TCGA-66-2770 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-66-2771        TCGA-66-2773        TCGA-66-2777        TCGA-66-2778 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-66-2780        TCGA-66-2781        TCGA-66-2782        TCGA-66-2783 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-66-2785        TCGA-66-2786        TCGA-66-2787        TCGA-66-2788 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-66-2789        TCGA-66-2790        TCGA-66-2791        TCGA-66-2792 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-66-2793        TCGA-66-2794        TCGA-66-2795        TCGA-66-2800 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-68-7755        TCGA-68-7756        TCGA-68-7757        TCGA-68-8250 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-68-8251        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED"   "3Q LOSS MUTATED" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8007 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-77-8008        TCGA-77-8009        TCGA-77-8128        TCGA-77-8130 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-77-8131        TCGA-77-8133        TCGA-77-8136        TCGA-77-8138 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8140        TCGA-77-8143        TCGA-77-8144 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-77-8145        TCGA-77-8148        TCGA-77-8150        TCGA-77-8153 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ        TCGA-77-A5G3 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6560        TCGA-85-6561 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-7950 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-85-8048        TCGA-85-8049        TCGA-85-8052        TCGA-85-8070 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-85-8071        TCGA-85-8072        TCGA-85-8276        TCGA-85-8277 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-85-8287        TCGA-85-8288        TCGA-85-8350        TCGA-85-8351 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-85-8352        TCGA-85-8353        TCGA-85-8354        TCGA-85-8355 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-85-8479        TCGA-85-8481        TCGA-85-8580        TCGA-85-8582 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-85-8664        TCGA-85-8666        TCGA-85-A4CL        TCGA-85-A4QR 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-85-A50M        TCGA-85-A513        TCGA-85-A53L        TCGA-90-6837 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-90-A4ED        TCGA-90-A4EE        TCGA-92-7340        TCGA-92-7341 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-92-8063        TCGA-92-8064        TCGA-92-8065        TCGA-94-7033 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-94-7557        TCGA-94-7943        TCGA-96-7544        TCGA-96-7545 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-96-8169        TCGA-96-8170        TCGA-96-A4JK        TCGA-96-A4JL 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-NC-A5HI 
"3Q LOSS WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-43-A475        TCGA-43-A56V        TCGA-46-3768        TCGA-46-6025 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-5898 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-56-7730        TCGA-56-7822        TCGA-56-8503        TCGA-56-8504 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-56-8622        TCGA-56-8624        TCGA-56-8625        TCGA-56-8626 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-56-A4BY        TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-58-8386        TCGA-58-8387        TCGA-58-8388        TCGA-58-8390 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-58-8391        TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-58-A46K        TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-60-2695        TCGA-60-2696        TCGA-60-2697        TCGA-60-2698 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-60-2703        TCGA-60-2704        TCGA-60-2706        TCGA-60-2707 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-60-2708        TCGA-60-2709        TCGA-60-2710        TCGA-60-2711 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-60-2712        TCGA-60-2713        TCGA-60-2714        TCGA-60-2715 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-60-2716        TCGA-60-2719        TCGA-60-2720        TCGA-60-2721 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-60-2722        TCGA-60-2723        TCGA-60-2724        TCGA-60-2725 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-60-2726        TCGA-66-2727        TCGA-66-2734        TCGA-66-2737 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2753        TCGA-66-2754 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-66-2755        TCGA-66-2756        TCGA-66-2757        TCGA-66-2758 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-66-2759        TCGA-66-2763        TCGA-66-2765        TCGA-66-2766 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-66-2767        TCGA-66-2768        TCGA-66-2769        TCGA-66-2770 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-66-2771        TCGA-66-2773        TCGA-66-2777        TCGA-66-2778 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-66-2780        TCGA-66-2781        TCGA-66-2782        TCGA-66-2783 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-66-2785        TCGA-66-2786        TCGA-66-2787        TCGA-66-2788 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-66-2789        TCGA-66-2790        TCGA-66-2791        TCGA-66-2792 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-66-2793        TCGA-66-2794        TCGA-66-2795        TCGA-66-2800 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-68-7755        TCGA-68-7756        TCGA-68-7757        TCGA-68-8250 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-68-8251        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED"   "3Q LOSS MUTATED" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8007 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-77-8008        TCGA-77-8009        TCGA-77-8128        TCGA-77-8130 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-77-8131        TCGA-77-8133        TCGA-77-8136        TCGA-77-8138 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8140        TCGA-77-8143        TCGA-77-8144 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-77-8145        TCGA-77-8148        TCGA-77-8150        TCGA-77-8153 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ        TCGA-77-A5G3 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6560        TCGA-85-6561 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-7950 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-85-8048        TCGA-85-8049        TCGA-85-8052        TCGA-85-8070 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-85-8071        TCGA-85-8072        TCGA-85-8276        TCGA-85-8277 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-85-8287        TCGA-85-8288        TCGA-85-8350        TCGA-85-8351 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-85-8352        TCGA-85-8353        TCGA-85-8354        TCGA-85-8355 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-85-8479        TCGA-85-8481        TCGA-85-8580        TCGA-85-8582 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-85-8664        TCGA-85-8666        TCGA-85-A4CL        TCGA-85-A4QR 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-85-A50M        TCGA-85-A513        TCGA-85-A53L        TCGA-90-6837 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-90-A4ED        TCGA-90-A4EE        TCGA-92-7340        TCGA-92-7341 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-92-8063        TCGA-92-8064        TCGA-92-8065        TCGA-94-7033 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-94-7557        TCGA-94-7943        TCGA-96-7544        TCGA-96-7545 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-96-8169        TCGA-96-8170        TCGA-96-A4JK        TCGA-96-A4JL 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-NC-A5HI 
"3Q LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D46V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  3Q LOSS MUTATED         0        8       18        0         8        12
  3Q LOSS WILD-TYPE       1       60      115        1        42        59
                   vv
clus                STAGE IIIA STAGE IIIB STAGE IV
  3Q LOSS MUTATED           10          4        0
  3Q LOSS WILD-TYPE         44         16        5
D46V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  3Q LOSS MUTATED    13  32  13   3
  3Q LOSS WILD-TYPE  80 218  31  16
D46V4, multiclass
    clus
vv   3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  T1              13                80
  T2              32               218
  T3              13                31
  T4               3                16
                   vv
clus                 N0  N1  N2  N3
  3Q LOSS MUTATED    38  18   4   1
  3Q LOSS WILD-TYPE 215  91  30   4
D46V5, multiclass
    clus
vv   3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  N0              38               215
  N1              18                91
  N2               4                30
  N3               1                 4
                   vv
clus                 M0  M1  MX
  3Q LOSS MUTATED    57   0   3
  3Q LOSS WILD-TYPE 291   5  44
D46V6, multiclass
    clus
vv   3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  M0              57               291
  M1               0                 5
  MX               3                44
D46V7, binary
                   cls
clus                  0   1
  3Q LOSS MUTATED    13  48
  3Q LOSS WILD-TYPE  88 257
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3Q LOSS MUTATED     13   48
  3Q LOSS WILD-TYPE   88  257
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  FEMALE              13                88
  MALE                48               257
D46V8, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  3Q LOSS MUTATED                                       1
  3Q LOSS WILD-TYPE                                    11
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  3Q LOSS MUTATED                                        2
  3Q LOSS WILD-TYPE                                      4
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  3Q LOSS MUTATED                                         0
  3Q LOSS WILD-TYPE                                       1
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  3Q LOSS MUTATED                                                            58
  3Q LOSS WILD-TYPE                                                         329
D46V9, multiclass
                                                             clus
vv                                                            3Q LOSS MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     1
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                    2
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              58
                                                             clus
vv                                                            3Q LOSS WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      11
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                      4
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               329
D46V10, binary
                   cls
clus                  0   1
  3Q LOSS MUTATED     1  60
  3Q LOSS WILD-TYPE  11 334
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3Q LOSS MUTATED      1   60
  3Q LOSS WILD-TYPE   11  334
     clus
vv    3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  NO                1                11
  YES              60               334
D46V11, continuous
D46V12, continuous
                   vv
clus                 R0  R1  R2  RX
  3Q LOSS MUTATED    50   2   0   3
  3Q LOSS WILD-TYPE 280   6   4  15
D46V13, multiclass
    clus
vv   3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  R0              50               280
  R1               2                 6
  R2               0                 4
  RX               3                15

Clustering(47) Variable = 4P LOSS MUTATION ANALYSIS
D47V1, survival
                   sevent
clus2                 0   1
  4P LOSS MUTATED   155  83
  4P LOSS WILD-TYPE  84  55
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
              238               139 
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
               83                55 
$`4P LOSS MUTATED`
TCGA-18-3407 TCGA-18-3411 TCGA-18-3412 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 
        4.47        46.52        11.34        59.51        28.34        24.92 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-5592 TCGA-21-1070 TCGA-21-1071 
       43.76         6.15         2.79         3.02       119.54        46.88 
TCGA-21-1072 TCGA-21-1076 TCGA-21-1077 TCGA-21-1079 TCGA-21-1080 TCGA-21-1081 
       99.16        60.89        34.78        31.69       122.43         9.30 
TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 TCGA-21-5786 TCGA-21-5787 TCGA-22-0940 
      119.80         8.78        31.63        33.93        10.82        19.99 
TCGA-22-0944 TCGA-22-1000 TCGA-22-1011 TCGA-22-1012 TCGA-22-4593 TCGA-22-4594 
        7.33        14.93         1.74        14.10        35.08        48.33 
TCGA-22-4595 TCGA-22-4599 TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 
       24.13        38.17        13.12        32.02        19.30         9.53 
TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5479 
       31.73        64.90        63.52        14.60        44.22        54.28 
TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-33-4532 
       11.74        18.84        30.08        62.86        56.32         7.63 
TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 
      114.05        97.94        43.10       103.53       141.34        14.07 
TCGA-33-4587 TCGA-33-4589 TCGA-33-6737 TCGA-33-6738 TCGA-34-2600 TCGA-34-2605 
       54.44        10.98        19.76        26.99        61.61        28.96 
TCGA-34-5231 TCGA-34-5232 TCGA-34-5236 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 
       50.24        67.79         9.04        14.07        30.94        18.12 
TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 
        4.96         1.08         3.95         0.43         7.82         6.81 
TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5027 
        0.39         3.39        74.07        44.71        68.58        60.76 
TCGA-39-5031 TCGA-39-5034 TCGA-39-5035 TCGA-39-5037 TCGA-39-5040 TCGA-43-2578 
       27.35        36.39        15.58        35.70        17.06        22.49 
TCGA-43-3394 TCGA-43-6143 TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 
       27.02        12.36         5.42         3.78         6.97         1.58 
TCGA-43-8115 TCGA-43-8118 TCGA-43-A474 TCGA-43-A56V TCGA-46-3768 TCGA-46-6025 
        6.64         2.93        11.61         5.06         9.96        10.65 
TCGA-46-6026 TCGA-51-4081 TCGA-52-7809 TCGA-52-7810 TCGA-52-7811 TCGA-52-7812 
       13.87        29.95         5.42        30.31         8.75        27.45 
TCGA-56-5898 TCGA-56-6545 TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 
       18.25         2.04         0.99         0.43         0.99         1.45 
TCGA-56-7582 TCGA-56-7730 TCGA-56-A49D TCGA-56-A4BX TCGA-56-A4ZK TCGA-58-8387 
        0.85         0.20         0.99         1.51         0.13        13.25 
TCGA-58-8392 TCGA-58-8393 TCGA-58-A46J TCGA-58-A46K TCGA-58-A46L TCGA-58-A46M 
       16.47        34.78        64.87        34.36        36.59        23.24 
TCGA-60-2695 TCGA-60-2696 TCGA-60-2698 TCGA-60-2703 TCGA-60-2706 TCGA-60-2707 
       21.07         3.58        10.22        96.82        92.71        21.70 
TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 
       80.42        49.48        66.51        41.39         9.01        56.91 
TCGA-60-2714 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 
       50.33        42.61         3.16        32.28        29.85        35.90 
TCGA-60-2724 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 
       23.57        11.77        16.96        43.10         2.01        21.07 
TCGA-66-2753 TCGA-66-2754 TCGA-66-2758 TCGA-66-2759 TCGA-66-2765 TCGA-66-2767 
        1.02         2.01        20.98        25.02         2.01         2.01 
TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 
       19.00         3.02         2.01        19.00        12.03         3.98 
TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 
       24.95         1.94        25.97         5.03        30.02        10.06 
TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 TCGA-77-6843 
       54.08         4.01        49.05         2.73         6.64        73.08 
TCGA-77-6845 TCGA-77-7139 TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 TCGA-77-7463 
       23.28        89.95         0.49        42.25        70.09        46.78 
TCGA-77-7465 TCGA-77-8009 TCGA-77-8128 TCGA-77-8130 TCGA-77-8133 TCGA-77-8138 
       15.75        53.95        37.81        82.92        53.92        17.69 
TCGA-77-8144 TCGA-77-8145 TCGA-77-8148 TCGA-77-8150 TCGA-77-8153 TCGA-77-8154 
       27.39         6.97         9.63        54.41        55.33        35.90 
TCGA-77-A5G3 TCGA-77-A5GB TCGA-77-A5GH TCGA-85-6560 TCGA-85-6561 TCGA-85-7696 
      117.57        30.81        23.44         0.36         0.79         0.59 
TCGA-85-7697 TCGA-85-7698 TCGA-85-7699 TCGA-85-7843 TCGA-85-8048 TCGA-85-8049 
        0.33         1.61         0.03         1.15         0.85         1.97 
TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 TCGA-85-8276 TCGA-85-8277 
        0.53        16.77        14.07         1.18         0.43         0.36 
TCGA-85-8287 TCGA-85-8288 TCGA-85-8350 TCGA-85-8352 TCGA-85-8353 TCGA-85-8354 
        1.45         1.78         1.97         2.20         1.78         2.01 
TCGA-85-8580 TCGA-85-8664 TCGA-85-8666 TCGA-85-A4CL TCGA-85-A4QR TCGA-85-A53L 
       14.60         0.10        15.58         0.46         0.82         0.43 
TCGA-90-7766 TCGA-90-7964 TCGA-90-A4ED TCGA-90-A4EE TCGA-92-7340 TCGA-92-7341 
        9.50        14.07         8.02        10.88         2.70         3.48 
TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 TCGA-94-7557 TCGA-94-7943 TCGA-96-A4JK 
        4.01         5.26         2.27         0.16        11.70         8.98 
TCGA-98-7454 TCGA-98-8020 TCGA-98-8021 TCGA-L3-A4E7 TCGA-L3-A524 TCGA-LA-A446 
        8.42         2.73        13.58         1.15        14.76         1.18 
TCGA-MF-A522 TCGA-NC-A5HE TCGA-NC-A5HG TCGA-NC-A5HI 
        3.02        56.61        50.86        37.32 

$`4P LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3414 TCGA-18-3419 
       12.16        81.07        79.46         4.80        13.02         1.61 
TCGA-18-4721 TCGA-18-5595 TCGA-21-1075 TCGA-21-1078 TCGA-21-5783 TCGA-21-5784 
       90.51        27.16        70.13        15.55        88.08        41.69 
TCGA-21-A5DI TCGA-22-1002 TCGA-22-1005 TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 
       32.19         4.31        64.21        27.02        48.82        20.45 
TCGA-22-4596 TCGA-22-4601 TCGA-22-4613 TCGA-22-5478 TCGA-22-5480 TCGA-22-5481 
        0.56        34.75        11.77         0.79        71.34        79.20 
TCGA-22-5492 TCGA-22-A5C4 TCGA-33-4566 TCGA-34-2596 TCGA-34-2604 TCGA-34-2608 
       16.60         0.95       173.79         2.63        31.50        32.84 
TCGA-34-2609 TCGA-34-5234 TCGA-34-5239 TCGA-34-5240 TCGA-37-3792 TCGA-37-4129 
       31.23        56.38        23.24        12.00         0.39         6.54 
TCGA-37-4130 TCGA-37-4132 TCGA-39-5011 TCGA-39-5022 TCGA-39-5024 TCGA-39-5028 
        8.09         7.46        47.80        55.17        70.03         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5036 TCGA-39-5039 TCGA-43-2576 TCGA-43-2581 
       24.33         1.94        35.64        17.88        40.21        38.66 
TCGA-43-3920 TCGA-43-5668 TCGA-43-5670 TCGA-43-6647 TCGA-43-6770 TCGA-43-7658 
       33.07        11.47        18.05        24.89        10.19        66.51 
TCGA-43-8116 TCGA-43-A475 TCGA-51-4079 TCGA-51-4080 TCGA-52-7622 TCGA-56-1622 
        6.35         9.73         0.39         0.39        17.79        28.93 
TCGA-56-5897 TCGA-56-6546 TCGA-56-7580 TCGA-56-7822 TCGA-56-8503 TCGA-56-8504 
        0.10         1.02         1.32         0.03         1.35         5.82 
TCGA-56-8622 TCGA-56-8624 TCGA-56-8625 TCGA-56-8626 TCGA-56-8628 TCGA-56-8629 
        1.78         1.18         2.07         0.56         0.53         1.12 
TCGA-56-A4BY TCGA-56-A4ZJ TCGA-56-A5DS TCGA-58-8386 TCGA-58-8388 TCGA-58-8390 
        0.99         1.02         0.26         0.03        12.43        29.95 
TCGA-58-8391 TCGA-58-A46N TCGA-60-2697 TCGA-60-2704 TCGA-60-2715 TCGA-60-2716 
       71.24        17.72        12.23        37.94        35.34        48.49 
TCGA-60-2725 TCGA-66-2744 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2763 
       26.79         0.99         0.92         0.99         0.99         0.99 
TCGA-66-2766 TCGA-66-2768 TCGA-66-2769 TCGA-66-2770 TCGA-66-2782 TCGA-66-2787 
        1.02         2.01         7.07        23.01        12.00        40.01 
TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 TCGA-68-7757 TCGA-68-8250 TCGA-68-8251 
       22.98         4.04        22.98         6.94         8.02         3.12 
TCGA-77-6842 TCGA-77-6844 TCGA-77-7138 TCGA-77-7140 TCGA-77-7337 TCGA-77-7338 
       29.56        75.09        11.18        20.78       106.95         0.16 
TCGA-77-8007 TCGA-77-8008 TCGA-77-8131 TCGA-77-8136 TCGA-77-8139 TCGA-77-8140 
        6.51        86.76        12.59        39.09       104.09        11.54 
TCGA-77-8143 TCGA-77-8156 TCGA-77-A5FZ TCGA-85-6798 TCGA-85-7844 TCGA-85-7950 
       26.40         0.33       126.18         1.12         1.25         1.97 
TCGA-85-8351 TCGA-85-8355 TCGA-85-8479 TCGA-85-8481 TCGA-85-8582 TCGA-85-A50M 
        1.81         0.66         0.72         0.66        13.91         0.62 
TCGA-85-A513 TCGA-90-6837 TCGA-90-7767 TCGA-90-7769 TCGA-94-7033 TCGA-96-7544 
        0.79        24.89         2.93        11.77         2.86        39.88 
TCGA-96-7545 TCGA-96-8169 TCGA-96-8170 TCGA-96-A4JL TCGA-98-8022 TCGA-98-8023 
       44.15         6.18         6.90         6.02         7.33        10.13 
TCGA-J1-A4AH 
        7.30 

  4P LOSS MUTATED 4P LOSS WILD-TYPE 
             0.03              0.03 
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
           141.34            173.79 
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
            14.68             11.77 
[1] "0.0 - 141.3 (14.7)" "0.0 - 173.8 (11.8)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-43-A475        TCGA-43-A56V        TCGA-46-3768        TCGA-46-6025 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-5898 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-56-7730        TCGA-56-7822        TCGA-56-8503        TCGA-56-8504 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-56-8622        TCGA-56-8624        TCGA-56-8625        TCGA-56-8626 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-56-A4BY        TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-58-8386        TCGA-58-8387        TCGA-58-8388        TCGA-58-8390 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-58-8391        TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-58-A46K        TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-60-2695        TCGA-60-2696        TCGA-60-2697        TCGA-60-2698 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-60-2703        TCGA-60-2704        TCGA-60-2706        TCGA-60-2707 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-60-2708        TCGA-60-2709        TCGA-60-2710        TCGA-60-2711 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-60-2712        TCGA-60-2713        TCGA-60-2714        TCGA-60-2715 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-60-2716        TCGA-60-2719        TCGA-60-2720        TCGA-60-2721 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-60-2722        TCGA-60-2723        TCGA-60-2724        TCGA-60-2725 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-60-2726        TCGA-66-2727        TCGA-66-2734        TCGA-66-2737 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2753        TCGA-66-2754 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-66-2755        TCGA-66-2756        TCGA-66-2757        TCGA-66-2758 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-66-2759        TCGA-66-2763        TCGA-66-2765        TCGA-66-2766 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-66-2767        TCGA-66-2768        TCGA-66-2769        TCGA-66-2770 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-66-2771        TCGA-66-2773        TCGA-66-2777        TCGA-66-2778 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-66-2780        TCGA-66-2781        TCGA-66-2782        TCGA-66-2783 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-66-2785        TCGA-66-2786        TCGA-66-2787        TCGA-66-2788 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-66-2789        TCGA-66-2790        TCGA-66-2791        TCGA-66-2792 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-66-2793        TCGA-66-2794        TCGA-66-2795        TCGA-66-2800 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-68-7755        TCGA-68-7756        TCGA-68-7757        TCGA-68-8250 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-68-8251        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8007 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-77-8008        TCGA-77-8009        TCGA-77-8128        TCGA-77-8130 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-77-8131        TCGA-77-8133        TCGA-77-8136        TCGA-77-8138 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-77-8139        TCGA-77-8140        TCGA-77-8143        TCGA-77-8144 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-77-8145        TCGA-77-8148        TCGA-77-8150        TCGA-77-8153 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ        TCGA-77-A5G3 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6560        TCGA-85-6561 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-7950 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-85-8048        TCGA-85-8049        TCGA-85-8052        TCGA-85-8070 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-85-8071        TCGA-85-8072        TCGA-85-8276        TCGA-85-8277 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-85-8287        TCGA-85-8288        TCGA-85-8350        TCGA-85-8351 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-85-8352        TCGA-85-8353        TCGA-85-8354        TCGA-85-8355 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-85-8479        TCGA-85-8481        TCGA-85-8580        TCGA-85-8582 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-85-8664        TCGA-85-8666        TCGA-85-A4CL        TCGA-85-A4QR 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-85-A50M        TCGA-85-A513        TCGA-85-A53L        TCGA-90-6837 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-90-A4ED        TCGA-90-A4EE        TCGA-92-7340        TCGA-92-7341 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-92-8063        TCGA-92-8064        TCGA-92-8065        TCGA-94-7033 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-94-7557        TCGA-94-7943        TCGA-96-7544        TCGA-96-7545 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-96-8169        TCGA-96-8170        TCGA-96-A4JK        TCGA-96-A4JL 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-NC-A5HI 
  "4P LOSS MUTATED" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-43-A475        TCGA-43-A56V        TCGA-46-3768        TCGA-46-6025 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-5898 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-56-7730        TCGA-56-7822        TCGA-56-8503        TCGA-56-8504 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-56-8622        TCGA-56-8624        TCGA-56-8625        TCGA-56-8626 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-56-A4BY        TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-58-8386        TCGA-58-8387        TCGA-58-8388        TCGA-58-8390 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-58-8391        TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-58-A46K        TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-60-2695        TCGA-60-2696        TCGA-60-2697        TCGA-60-2698 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-60-2703        TCGA-60-2704        TCGA-60-2706        TCGA-60-2707 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-60-2708        TCGA-60-2709        TCGA-60-2710        TCGA-60-2711 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-60-2712        TCGA-60-2713        TCGA-60-2714        TCGA-60-2715 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-60-2716        TCGA-60-2719        TCGA-60-2720        TCGA-60-2721 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-60-2722        TCGA-60-2723        TCGA-60-2724        TCGA-60-2725 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-60-2726        TCGA-66-2727        TCGA-66-2734        TCGA-66-2737 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2753        TCGA-66-2754 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-66-2755        TCGA-66-2756        TCGA-66-2757        TCGA-66-2758 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-66-2759        TCGA-66-2763        TCGA-66-2765        TCGA-66-2766 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-66-2767        TCGA-66-2768        TCGA-66-2769        TCGA-66-2770 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-66-2771        TCGA-66-2773        TCGA-66-2777        TCGA-66-2778 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-66-2780        TCGA-66-2781        TCGA-66-2782        TCGA-66-2783 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-66-2785        TCGA-66-2786        TCGA-66-2787        TCGA-66-2788 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-66-2789        TCGA-66-2790        TCGA-66-2791        TCGA-66-2792 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-66-2793        TCGA-66-2794        TCGA-66-2795        TCGA-66-2800 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-68-7755        TCGA-68-7756        TCGA-68-7757        TCGA-68-8250 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-68-8251        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8007 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-77-8008        TCGA-77-8009        TCGA-77-8128        TCGA-77-8130 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-77-8131        TCGA-77-8133        TCGA-77-8136        TCGA-77-8138 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-77-8139        TCGA-77-8140        TCGA-77-8143        TCGA-77-8144 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-77-8145        TCGA-77-8148        TCGA-77-8150        TCGA-77-8153 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ        TCGA-77-A5G3 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6560        TCGA-85-6561 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-7950 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-85-8048        TCGA-85-8049        TCGA-85-8052        TCGA-85-8070 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-85-8071        TCGA-85-8072        TCGA-85-8276        TCGA-85-8277 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-85-8287        TCGA-85-8288        TCGA-85-8350        TCGA-85-8351 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-85-8352        TCGA-85-8353        TCGA-85-8354        TCGA-85-8355 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-85-8479        TCGA-85-8481        TCGA-85-8580        TCGA-85-8582 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-85-8664        TCGA-85-8666        TCGA-85-A4CL        TCGA-85-A4QR 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-85-A50M        TCGA-85-A513        TCGA-85-A53L        TCGA-90-6837 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-90-A4ED        TCGA-90-A4EE        TCGA-92-7340        TCGA-92-7341 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-92-8063        TCGA-92-8064        TCGA-92-8065        TCGA-94-7033 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-94-7557        TCGA-94-7943        TCGA-96-7544        TCGA-96-7545 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-96-8169        TCGA-96-8170        TCGA-96-A4JK        TCGA-96-A4JL 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-NC-A5HI 
  "4P LOSS MUTATED" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-43-A475        TCGA-43-A56V        TCGA-46-3768        TCGA-46-6025 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-5898 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-56-7730        TCGA-56-7822        TCGA-56-8503        TCGA-56-8504 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-56-8622        TCGA-56-8624        TCGA-56-8625        TCGA-56-8626 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-56-A4BY        TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-58-8386        TCGA-58-8387        TCGA-58-8388        TCGA-58-8390 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-58-8391        TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-58-A46K        TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-60-2695        TCGA-60-2696        TCGA-60-2697        TCGA-60-2698 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-60-2703        TCGA-60-2704        TCGA-60-2706        TCGA-60-2707 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-60-2708        TCGA-60-2709        TCGA-60-2710        TCGA-60-2711 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-60-2712        TCGA-60-2713        TCGA-60-2714        TCGA-60-2715 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-60-2716        TCGA-60-2719        TCGA-60-2720        TCGA-60-2721 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-60-2722        TCGA-60-2723        TCGA-60-2724        TCGA-60-2725 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-60-2726        TCGA-66-2727        TCGA-66-2734        TCGA-66-2737 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2753        TCGA-66-2754 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-66-2755        TCGA-66-2756        TCGA-66-2757        TCGA-66-2758 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-66-2759        TCGA-66-2763        TCGA-66-2765        TCGA-66-2766 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-66-2767        TCGA-66-2768        TCGA-66-2769        TCGA-66-2770 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-66-2771        TCGA-66-2773        TCGA-66-2777        TCGA-66-2778 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-66-2780        TCGA-66-2781        TCGA-66-2782        TCGA-66-2783 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-66-2785        TCGA-66-2786        TCGA-66-2787        TCGA-66-2788 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-66-2789        TCGA-66-2790        TCGA-66-2791        TCGA-66-2792 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-66-2793        TCGA-66-2794        TCGA-66-2795        TCGA-66-2800 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-68-7755        TCGA-68-7756        TCGA-68-7757        TCGA-68-8250 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-68-8251        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8007 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-77-8008        TCGA-77-8009        TCGA-77-8128        TCGA-77-8130 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-77-8131        TCGA-77-8133        TCGA-77-8136        TCGA-77-8138 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-77-8139        TCGA-77-8140        TCGA-77-8143        TCGA-77-8144 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-77-8145        TCGA-77-8148        TCGA-77-8150        TCGA-77-8153 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ        TCGA-77-A5G3 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6560        TCGA-85-6561 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-7950 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-85-8048        TCGA-85-8049        TCGA-85-8052        TCGA-85-8070 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-85-8071        TCGA-85-8072        TCGA-85-8276        TCGA-85-8277 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-85-8287        TCGA-85-8288        TCGA-85-8350        TCGA-85-8351 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-85-8352        TCGA-85-8353        TCGA-85-8354        TCGA-85-8355 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-85-8479        TCGA-85-8481        TCGA-85-8580        TCGA-85-8582 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-85-8664        TCGA-85-8666        TCGA-85-A4CL        TCGA-85-A4QR 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-85-A50M        TCGA-85-A513        TCGA-85-A53L        TCGA-90-6837 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-90-A4ED        TCGA-90-A4EE        TCGA-92-7340        TCGA-92-7341 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-92-8063        TCGA-92-8064        TCGA-92-8065        TCGA-94-7033 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-94-7557        TCGA-94-7943        TCGA-96-7544        TCGA-96-7545 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-96-8169        TCGA-96-8170        TCGA-96-A4JK        TCGA-96-A4JL 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-NC-A5HI 
  "4P LOSS MUTATED" 
[1] "hr=" "1.2"
D47V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  4P LOSS MUTATED         0       37       91        1        33        37
  4P LOSS WILD-TYPE       1       31       42        0        17        34
                   vv
clus                STAGE IIIA STAGE IIIB STAGE IV
  4P LOSS MUTATED           37         13        2
  4P LOSS WILD-TYPE         17          7        3
D47V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  4P LOSS MUTATED    53 164  26  10
  4P LOSS WILD-TYPE  40  86  18   9
D47V4, multiclass
    clus
vv   4P LOSS MUTATED 4P LOSS WILD-TYPE
  T1              53                40
  T2             164                86
  T3              26                18
  T4              10                 9
                   vv
clus                 N0  N1  N2  N3
  4P LOSS MUTATED   152  71  24   4
  4P LOSS WILD-TYPE 101  38  10   1
D47V5, multiclass
    clus
vv   4P LOSS MUTATED 4P LOSS WILD-TYPE
  N0             152               101
  N1              71                38
  N2              24                10
  N3               4                 1
                   vv
clus                 M0  M1  MX
  4P LOSS MUTATED   222   2  25
  4P LOSS WILD-TYPE 126   3  22
D47V6, multiclass
    clus
vv   4P LOSS MUTATED 4P LOSS WILD-TYPE
  M0             222               126
  M1               2                 3
  MX              25                22
D47V7, binary
                   cls
clus                  0   1
  4P LOSS MUTATED    59 194
  4P LOSS WILD-TYPE  42 111
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4P LOSS MUTATED     59  194
  4P LOSS WILD-TYPE   42  111
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  FEMALE              59                42
  MALE               194               111
D47V8, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  4P LOSS MUTATED                                       7
  4P LOSS WILD-TYPE                                     5
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  4P LOSS MUTATED                                        1
  4P LOSS WILD-TYPE                                      5
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  4P LOSS MUTATED                                         1
  4P LOSS WILD-TYPE                                       0
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  4P LOSS MUTATED                                                           244
  4P LOSS WILD-TYPE                                                         143
D47V9, multiclass
                                                             clus
vv                                                            4P LOSS MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     7
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                    1
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                   1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             244
                                                             clus
vv                                                            4P LOSS WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       5
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                      5
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                     0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               143
D47V10, binary
                   cls
clus                  0   1
  4P LOSS MUTATED    10 243
  4P LOSS WILD-TYPE   2 151
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4P LOSS MUTATED     10  243
  4P LOSS WILD-TYPE    2  151
     clus
vv    4P LOSS MUTATED 4P LOSS WILD-TYPE
  NO               10                 2
  YES             243               151
D47V11, continuous
D47V12, continuous
                   vv
clus                 R0  R1  R2  RX
  4P LOSS MUTATED   206   4   4  10
  4P LOSS WILD-TYPE 124   4   0   8
D47V13, multiclass
    clus
vv   4P LOSS MUTATED 4P LOSS WILD-TYPE
  R0             206               124
  R1               4                 4
  R2               4                 0
  RX              10                 8

Clustering(48) Variable = 4Q LOSS MUTATION ANALYSIS
D48V1, survival
                   sevent
clus2                 0   1
  4Q LOSS MUTATED   143  79
  4Q LOSS WILD-TYPE  96  59
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
              222               155 
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
               79                59 
$`4Q LOSS MUTATED`
TCGA-18-3407 TCGA-18-3411 TCGA-18-3412 TCGA-18-3415 TCGA-18-3416 TCGA-18-4083 
        4.47        46.52        11.34        59.51        28.34         6.15 
TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-21-1070 TCGA-21-1071 TCGA-21-1072 
        2.79        90.51         3.02       119.54        46.88        99.16 
TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 TCGA-21-1079 TCGA-21-1080 TCGA-21-1081 
       70.13        60.89        34.78        31.69       122.43         9.30 
TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 
      119.80         8.78        31.63        33.93        10.82         7.33 
TCGA-22-1000 TCGA-22-1011 TCGA-22-1012 TCGA-22-4594 TCGA-22-4595 TCGA-22-4599 
       14.93         1.74        14.10        48.33        24.13        38.17 
TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 
       13.12        32.02        19.30        11.77        31.73        64.90 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5479 TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 
       63.52        14.60        54.28        11.74        18.84        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4566 
       62.86        56.32         7.63       114.05        97.94       173.79 
TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-4587 TCGA-33-4589 TCGA-33-6737 
      103.53       141.34        14.07        54.44        10.98        19.76 
TCGA-34-2600 TCGA-34-2605 TCGA-34-5236 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 
       61.61        28.96         9.04        14.07        30.94        18.12 
TCGA-34-5929 TCGA-34-7107 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 
        4.96         1.08         7.82         6.81         0.39         3.39 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5027 TCGA-39-5034 TCGA-39-5035 TCGA-39-5036 
       44.71        68.58        60.76        36.39        15.58        35.64 
TCGA-39-5037 TCGA-39-5040 TCGA-43-2578 TCGA-43-3394 TCGA-43-6143 TCGA-43-6771 
       35.70        17.06        22.49        27.02        12.36         5.42 
TCGA-43-6773 TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 TCGA-43-8118 TCGA-43-A474 
        3.78         1.58        66.51         6.64         2.93        11.61 
TCGA-43-A56V TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4081 
        5.06         9.96        10.65        13.87         0.39        29.95 
TCGA-52-7809 TCGA-52-7810 TCGA-52-7811 TCGA-56-5898 TCGA-56-6545 TCGA-56-7221 
        5.42        30.31         8.75        18.25         2.04         0.99 
TCGA-56-7222 TCGA-56-7223 TCGA-56-7582 TCGA-56-7730 TCGA-56-8625 TCGA-56-8629 
        0.43         0.99         0.85         0.20         2.07         1.12 
TCGA-56-A49D TCGA-56-A4BX TCGA-56-A4ZJ TCGA-56-A4ZK TCGA-58-8390 TCGA-58-8392 
        0.99         1.51         1.02         0.13        29.95        16.47 
TCGA-58-8393 TCGA-58-A46J TCGA-58-A46K TCGA-58-A46L TCGA-58-A46M TCGA-60-2695 
       34.78        64.87        34.36        36.59        23.24        21.07 
TCGA-60-2696 TCGA-60-2698 TCGA-60-2703 TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 
        3.58        10.22        96.82        92.71        21.70        80.42 
TCGA-60-2709 TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 TCGA-60-2719 TCGA-60-2720 
       49.48         9.01        56.91        50.33        42.61         3.16 
TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2726 TCGA-66-2727 
       32.28        29.85        35.90        23.57        11.77        16.96 
TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 TCGA-66-2753 TCGA-66-2754 TCGA-66-2757 
       43.10         2.01        21.07         1.02         2.01         0.99 
TCGA-66-2758 TCGA-66-2763 TCGA-66-2765 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 
       20.98         0.99         2.01        19.00         3.02         2.01 
TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2785 TCGA-66-2791 TCGA-66-2792 
       19.00        12.03         3.98         1.94         5.03        30.02 
TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 
       10.06        54.08         4.01        49.05         2.73         6.64 
TCGA-68-7757 TCGA-77-6843 TCGA-77-6845 TCGA-77-7139 TCGA-77-7141 TCGA-77-7142 
        6.94        73.08        23.28        89.95         0.49        42.25 
TCGA-77-7463 TCGA-77-7465 TCGA-77-8007 TCGA-77-8009 TCGA-77-8128 TCGA-77-8130 
       46.78        15.75         6.51        53.95        37.81        82.92 
TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 TCGA-77-8144 TCGA-77-8145 TCGA-77-8148 
       53.92        39.09        17.69        27.39         6.97         9.63 
TCGA-77-8150 TCGA-77-8153 TCGA-77-8154 TCGA-77-A5G3 TCGA-77-A5GB TCGA-77-A5GH 
       54.41        55.33        35.90       117.57        30.81        23.44 
TCGA-85-6560 TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 TCGA-85-7699 TCGA-85-8048 
        0.36         0.79         1.12         0.59         0.03         0.85 
TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 TCGA-85-8072 TCGA-85-8276 TCGA-85-8277 
        1.97         0.53        16.77         1.18         0.43         0.36 
TCGA-85-8287 TCGA-85-8350 TCGA-85-8352 TCGA-85-8353 TCGA-85-8479 TCGA-85-8580 
        1.45         1.97         2.20         1.78         0.72        14.60 
TCGA-85-8664 TCGA-85-8666 TCGA-85-A4CL TCGA-85-A4QR TCGA-85-A53L TCGA-90-7769 
        0.10        15.58         0.46         0.82         0.43        11.77 
TCGA-90-7964 TCGA-90-A4ED TCGA-90-A4EE TCGA-92-7340 TCGA-92-8063 TCGA-92-8064 
       14.07         8.02        10.88         2.70         4.01         5.26 
TCGA-92-8065 TCGA-94-7557 TCGA-94-7943 TCGA-96-A4JK TCGA-98-7454 TCGA-98-8021 
        2.27         0.16        11.70         8.98         8.42        13.58 
TCGA-98-8022 TCGA-L3-A524 TCGA-LA-A446 TCGA-MF-A522 TCGA-NC-A5HE TCGA-NC-A5HI 
        7.33        14.76         1.18         3.02        56.61        37.32 

$`4Q LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3414 TCGA-18-3417 
       12.16        81.07        79.46         4.80        13.02        24.92 
TCGA-18-3419 TCGA-18-3421 TCGA-18-5595 TCGA-21-1078 TCGA-21-5783 TCGA-21-5784 
        1.61        43.76        27.16        15.55        88.08        41.69 
TCGA-21-A5DI TCGA-22-0940 TCGA-22-1002 TCGA-22-1005 TCGA-22-1016 TCGA-22-1017 
       32.19        19.99         4.31        64.21        27.02        48.82 
TCGA-22-4591 TCGA-22-4593 TCGA-22-4596 TCGA-22-4601 TCGA-22-4609 TCGA-22-5477 
       20.45        35.08         0.56        34.75         9.53        44.22 
TCGA-22-5478 TCGA-22-5480 TCGA-22-5481 TCGA-22-5492 TCGA-22-A5C4 TCGA-33-4547 
        0.79        71.34        79.20        16.60         0.95        43.10 
TCGA-33-6738 TCGA-34-2596 TCGA-34-2604 TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 
       26.99         2.63        31.50        32.84        31.23        50.24 
TCGA-34-5232 TCGA-34-5234 TCGA-34-5239 TCGA-34-5240 TCGA-37-3783 TCGA-37-3789 
       67.79        56.38        23.24        12.00         3.95         0.43 
TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 TCGA-39-5011 TCGA-39-5016 
        0.39         6.54         8.09         7.46        47.80        74.07 
TCGA-39-5022 TCGA-39-5024 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 
       55.17        70.03         1.71        24.33         1.94        27.35 
TCGA-39-5039 TCGA-43-2576 TCGA-43-2581 TCGA-43-3920 TCGA-43-5668 TCGA-43-5670 
       17.88        40.21        38.66        33.07        11.47        18.05 
TCGA-43-6647 TCGA-43-6770 TCGA-43-7656 TCGA-43-8116 TCGA-43-A475 TCGA-51-4080 
       24.89        10.19         6.97         6.35         9.73         0.39 
TCGA-52-7622 TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 TCGA-56-6546 TCGA-56-7579 
       17.79        27.45        28.93         0.10         1.02         1.45 
TCGA-56-7580 TCGA-56-7822 TCGA-56-8503 TCGA-56-8504 TCGA-56-8622 TCGA-56-8624 
        1.32         0.03         1.35         5.82         1.78         1.18 
TCGA-56-8626 TCGA-56-8628 TCGA-56-A4BY TCGA-56-A5DS TCGA-58-8386 TCGA-58-8387 
        0.56         0.53         0.99         0.26         0.03        13.25 
TCGA-58-8388 TCGA-58-8391 TCGA-58-A46N TCGA-60-2697 TCGA-60-2704 TCGA-60-2710 
       12.43        71.24        17.72        12.23        37.94        66.51 
TCGA-60-2711 TCGA-60-2715 TCGA-60-2716 TCGA-60-2725 TCGA-66-2744 TCGA-66-2755 
       41.39        35.34        48.49        26.79         0.99         0.92 
TCGA-66-2756 TCGA-66-2759 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 
        0.99        25.02         1.02         2.01         2.01         7.07 
TCGA-66-2770 TCGA-66-2782 TCGA-66-2783 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 
       23.01        12.00        24.95        25.97        40.01        22.98 
TCGA-66-2789 TCGA-66-2790 TCGA-68-8250 TCGA-68-8251 TCGA-77-6842 TCGA-77-6844 
        4.04        22.98         8.02         3.12        29.56        75.09 
TCGA-77-7138 TCGA-77-7140 TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 TCGA-77-8008 
       11.18        20.78        70.09       106.95         0.16        86.76 
TCGA-77-8131 TCGA-77-8139 TCGA-77-8140 TCGA-77-8143 TCGA-77-8156 TCGA-77-A5FZ 
       12.59       104.09        11.54        26.40         0.33       126.18 
TCGA-85-7697 TCGA-85-7698 TCGA-85-7843 TCGA-85-7844 TCGA-85-7950 TCGA-85-8071 
        0.33         1.61         1.15         1.25         1.97        14.07 
TCGA-85-8288 TCGA-85-8351 TCGA-85-8354 TCGA-85-8355 TCGA-85-8481 TCGA-85-8582 
        1.78         1.81         2.01         0.66         0.66        13.91 
TCGA-85-A50M TCGA-85-A513 TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 TCGA-92-7341 
        0.62         0.79        24.89         9.50         2.93         3.48 
TCGA-94-7033 TCGA-96-7544 TCGA-96-7545 TCGA-96-8169 TCGA-96-8170 TCGA-96-A4JL 
        2.86        39.88        44.15         6.18         6.90         6.02 
TCGA-98-8020 TCGA-98-8023 TCGA-J1-A4AH TCGA-L3-A4E7 TCGA-NC-A5HG 
        2.73        10.13         7.30         1.15        50.86 

  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
             0.03              0.03 
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
           173.79            126.18 
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
            14.07             12.43 
[1] "0.0 - 173.8 (14.1)" "0.0 - 126.2 (12.4)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-43-A475        TCGA-43-A56V        TCGA-46-3768        TCGA-46-6025 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-5898 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-56-7730        TCGA-56-7822        TCGA-56-8503        TCGA-56-8504 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-56-8622        TCGA-56-8624        TCGA-56-8625        TCGA-56-8626 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-56-A4BY        TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-58-8386        TCGA-58-8387        TCGA-58-8388        TCGA-58-8390 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-58-8391        TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-58-A46K        TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-60-2695        TCGA-60-2696        TCGA-60-2697        TCGA-60-2698 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-60-2703        TCGA-60-2704        TCGA-60-2706        TCGA-60-2707 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-60-2708        TCGA-60-2709        TCGA-60-2710        TCGA-60-2711 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-60-2712        TCGA-60-2713        TCGA-60-2714        TCGA-60-2715 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-60-2716        TCGA-60-2719        TCGA-60-2720        TCGA-60-2721 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-60-2722        TCGA-60-2723        TCGA-60-2724        TCGA-60-2725 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-60-2726        TCGA-66-2727        TCGA-66-2734        TCGA-66-2737 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2753        TCGA-66-2754 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-66-2755        TCGA-66-2756        TCGA-66-2757        TCGA-66-2758 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-66-2759        TCGA-66-2763        TCGA-66-2765        TCGA-66-2766 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-66-2767        TCGA-66-2768        TCGA-66-2769        TCGA-66-2770 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-66-2771        TCGA-66-2773        TCGA-66-2777        TCGA-66-2778 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-66-2780        TCGA-66-2781        TCGA-66-2782        TCGA-66-2783 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-66-2785        TCGA-66-2786        TCGA-66-2787        TCGA-66-2788 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-66-2789        TCGA-66-2790        TCGA-66-2791        TCGA-66-2792 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-66-2793        TCGA-66-2794        TCGA-66-2795        TCGA-66-2800 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-68-7755        TCGA-68-7756        TCGA-68-7757        TCGA-68-8250 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-68-8251        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8007 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-77-8008        TCGA-77-8009        TCGA-77-8128        TCGA-77-8130 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-77-8131        TCGA-77-8133        TCGA-77-8136        TCGA-77-8138 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-77-8139        TCGA-77-8140        TCGA-77-8143        TCGA-77-8144 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-77-8145        TCGA-77-8148        TCGA-77-8150        TCGA-77-8153 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ        TCGA-77-A5G3 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6560        TCGA-85-6561 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-7950 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-85-8048        TCGA-85-8049        TCGA-85-8052        TCGA-85-8070 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-85-8071        TCGA-85-8072        TCGA-85-8276        TCGA-85-8277 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-85-8287        TCGA-85-8288        TCGA-85-8350        TCGA-85-8351 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-85-8352        TCGA-85-8353        TCGA-85-8354        TCGA-85-8355 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-85-8479        TCGA-85-8481        TCGA-85-8580        TCGA-85-8582 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-85-8664        TCGA-85-8666        TCGA-85-A4CL        TCGA-85-A4QR 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-85-A50M        TCGA-85-A513        TCGA-85-A53L        TCGA-90-6837 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-90-A4ED        TCGA-90-A4EE        TCGA-92-7340        TCGA-92-7341 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-92-8063        TCGA-92-8064        TCGA-92-8065        TCGA-94-7033 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-94-7557        TCGA-94-7943        TCGA-96-7544        TCGA-96-7545 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-96-8169        TCGA-96-8170        TCGA-96-A4JK        TCGA-96-A4JL 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-NC-A5HI 
  "4Q LOSS MUTATED" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-43-A475        TCGA-43-A56V        TCGA-46-3768        TCGA-46-6025 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-5898 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-56-7730        TCGA-56-7822        TCGA-56-8503        TCGA-56-8504 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-56-8622        TCGA-56-8624        TCGA-56-8625        TCGA-56-8626 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-56-A4BY        TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-58-8391        TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-58-A46K        TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-60-2695        TCGA-60-2696        TCGA-60-2697        TCGA-60-2698 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-60-2703        TCGA-60-2704        TCGA-60-2706        TCGA-60-2707 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-60-2708        TCGA-60-2709        TCGA-60-2710        TCGA-60-2711 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-60-2712        TCGA-60-2713        TCGA-60-2714        TCGA-60-2715 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-60-2716        TCGA-60-2719        TCGA-60-2720        TCGA-60-2721 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-60-2722        TCGA-60-2723        TCGA-60-2724        TCGA-60-2725 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-60-2726        TCGA-66-2727        TCGA-66-2734        TCGA-66-2737 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2753        TCGA-66-2754 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-66-2755        TCGA-66-2756        TCGA-66-2757        TCGA-66-2758 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-66-2759        TCGA-66-2763        TCGA-66-2765        TCGA-66-2766 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-66-2767        TCGA-66-2768        TCGA-66-2769        TCGA-66-2770 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-66-2771        TCGA-66-2773        TCGA-66-2777        TCGA-66-2778 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-66-2780        TCGA-66-2781        TCGA-66-2782        TCGA-66-2783 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-66-2785        TCGA-66-2786        TCGA-66-2787        TCGA-66-2788 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-66-2789        TCGA-66-2790        TCGA-66-2791        TCGA-66-2792 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
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  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
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  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-85-8479        TCGA-85-8481        TCGA-85-8580        TCGA-85-8582 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-85-8664        TCGA-85-8666        TCGA-85-A4CL        TCGA-85-A4QR 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-85-A50M        TCGA-85-A513        TCGA-85-A53L        TCGA-90-6837 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-90-A4ED        TCGA-90-A4EE        TCGA-92-7340        TCGA-92-7341 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-92-8063        TCGA-92-8064        TCGA-92-8065        TCGA-94-7033 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-94-7557        TCGA-94-7943        TCGA-96-7544        TCGA-96-7545 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-96-8169        TCGA-96-8170        TCGA-96-A4JK        TCGA-96-A4JL 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-NC-A5HI 
  "4Q LOSS MUTATED" 
[1] "hr=" "1.2"
D48V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  4Q LOSS MUTATED         0       37       87        1        24        40
  4Q LOSS WILD-TYPE       1       31       46        0        26        31
                   vv
clus                STAGE IIIA STAGE IIIB STAGE IV
  4Q LOSS MUTATED           32         11        1
  4Q LOSS WILD-TYPE         22          9        4
D48V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  4Q LOSS MUTATED    47 154  25   9
  4Q LOSS WILD-TYPE  46  96  19  10
D48V4, multiclass
    clus
vv   4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  T1              47                46
  T2             154                96
  T3              25                19
  T4               9                10
                   vv
clus                 N0  N1  N2  N3
  4Q LOSS MUTATED   148  66  17   2
  4Q LOSS WILD-TYPE 105  43  17   3
D48V5, multiclass
    clus
vv   4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  N0             148               105
  N1              66                43
  N2              17                17
  N3               2                 3
                   vv
clus                 M0  M1  MX
  4Q LOSS MUTATED   205   1  25
  4Q LOSS WILD-TYPE 143   4  22
D48V6, multiclass
    clus
vv   4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  M0             205               143
  M1               1                 4
  MX              25                22
D48V7, binary
                   cls
clus                  0   1
  4Q LOSS MUTATED    59 176
  4Q LOSS WILD-TYPE  42 129
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4Q LOSS MUTATED     59  176
  4Q LOSS WILD-TYPE   42  129
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  FEMALE              59                42
  MALE               176               129
D48V8, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  4Q LOSS MUTATED                                       5
  4Q LOSS WILD-TYPE                                     7
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  4Q LOSS MUTATED                                        2
  4Q LOSS WILD-TYPE                                      4
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  4Q LOSS MUTATED                                         1
  4Q LOSS WILD-TYPE                                       0
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  4Q LOSS MUTATED                                                           227
  4Q LOSS WILD-TYPE                                                         160
D48V9, multiclass
                                                             clus
vv                                                            4Q LOSS MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     5
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                    2
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                   1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             227
                                                             clus
vv                                                            4Q LOSS WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       7
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                      4
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                     0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               160
D48V10, binary
                   cls
clus                  0   1
  4Q LOSS MUTATED    10 225
  4Q LOSS WILD-TYPE   2 169
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4Q LOSS MUTATED     10  225
  4Q LOSS WILD-TYPE    2  169
     clus
vv    4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  NO               10                 2
  YES             225               169
D48V11, continuous
D48V12, continuous
                   vv
clus                 R0  R1  R2  RX
  4Q LOSS MUTATED   190   4   3  12
  4Q LOSS WILD-TYPE 140   4   1   6
D48V13, multiclass
    clus
vv   4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  R0             190               140
  R1               4                 4
  R2               3                 1
  RX              12                 6

Clustering(49) Variable = 5P LOSS MUTATION ANALYSIS
D49V1, survival
                   sevent
clus2                 0   1
  5P LOSS MUTATED    42  18
  5P LOSS WILD-TYPE 197 120
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
               60               317 
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
               18               120 
$`5P LOSS MUTATED`
TCGA-18-3409 TCGA-18-3410 TCGA-18-4083 TCGA-21-1070 TCGA-21-1079 TCGA-22-4607 
       79.46         4.80         6.15       119.54        31.69        19.30 
TCGA-22-5472 TCGA-22-5479 TCGA-22-5485 TCGA-22-5491 TCGA-33-4532 TCGA-33-4538 
       64.90        54.28        30.08        56.32         7.63        97.94 
TCGA-33-4547 TCGA-33-6737 TCGA-34-2605 TCGA-34-5231 TCGA-37-4130 TCGA-39-5037 
       43.10        19.76        28.96        50.24         8.09        35.70 
TCGA-43-2578 TCGA-43-8118 TCGA-51-4079 TCGA-52-7810 TCGA-56-5897 TCGA-56-5898 
       22.49         2.93         0.39        30.31         0.10        18.25 
TCGA-56-7221 TCGA-56-7730 TCGA-56-8622 TCGA-56-A49D TCGA-58-A46L TCGA-60-2706 
        0.99         0.20         1.78         0.99        36.59        92.71 
TCGA-60-2707 TCGA-60-2708 TCGA-60-2710 TCGA-60-2713 TCGA-60-2722 TCGA-66-2734 
       21.70        80.42        66.51        56.91        29.85        43.10 
TCGA-66-2755 TCGA-66-2789 TCGA-66-2791 TCGA-66-2793 TCGA-68-8250 TCGA-68-8251 
        0.92         4.04         5.03        10.06         8.02         3.12 
TCGA-77-7139 TCGA-77-8140 TCGA-77-8148 TCGA-77-8153 TCGA-77-8154 TCGA-85-6561 
       89.95        11.54         9.63        55.33        35.90         0.79 
TCGA-85-7698 TCGA-85-7950 TCGA-85-8276 TCGA-85-8288 TCGA-85-8352 TCGA-85-8355 
        1.61         1.97         0.43         1.78         2.20         0.66 
TCGA-90-7964 TCGA-92-8063 TCGA-94-7033 TCGA-94-7943 TCGA-NC-A5HG TCGA-NC-A5HI 
       14.07         4.01         2.86        11.70        50.86        37.32 

$`5P LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3411 TCGA-18-3412 TCGA-18-3414 
       12.16         4.47        81.07        46.52        11.34        13.02 
TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4086 
       59.51        28.34        24.92         1.61        43.76         2.79 
TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 
       90.51         3.02        27.16        46.88        99.16        70.13 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1080 TCGA-21-1081 TCGA-21-1082 
       60.89        34.78        15.55       122.43         9.30       119.80 
TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 
        8.78        31.63        88.08        41.69        33.93        10.82 
TCGA-21-A5DI TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 
       32.19        19.99         7.33        14.93         4.31        64.21 
TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 TCGA-22-4593 
        1.74        14.10        27.02        48.82        20.45        35.08 
TCGA-22-4594 TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 
       48.33        24.13         0.56        38.17        34.75        13.12 
TCGA-22-4605 TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 TCGA-22-5473 TCGA-22-5474 
       32.02         9.53        11.77        31.73        63.52        14.60 
TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5481 TCGA-22-5482 TCGA-22-5483 
       44.22         0.79        71.34        79.20        11.74        18.84 
TCGA-22-5489 TCGA-22-5492 TCGA-22-A5C4 TCGA-33-4533 TCGA-33-4566 TCGA-33-4582 
       62.86        16.60         0.95       114.05       173.79       103.53 
TCGA-33-4583 TCGA-33-4586 TCGA-33-4587 TCGA-33-4589 TCGA-33-6738 TCGA-34-2596 
      141.34        14.07        54.44        10.98        26.99         2.63 
TCGA-34-2600 TCGA-34-2604 TCGA-34-2608 TCGA-34-2609 TCGA-34-5232 TCGA-34-5234 
       61.61        31.50        32.84        31.23        67.79        56.38 
TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 
        9.04        23.24        12.00        14.07        30.94        18.12 
TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 
        4.96         1.08         3.95         0.43         0.39         6.54 
TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5011 
        7.46         7.82         6.81         0.39         3.39        47.80 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 
       74.07        44.71        68.58        55.17        70.03        60.76 
TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 TCGA-39-5035 
        1.71        24.33         1.94        27.35        36.39        15.58 
TCGA-39-5036 TCGA-39-5039 TCGA-39-5040 TCGA-43-2576 TCGA-43-2581 TCGA-43-3394 
       35.64        17.88        17.06        40.21        38.66        27.02 
TCGA-43-3920 TCGA-43-5668 TCGA-43-5670 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 
       33.07        11.47        18.05        12.36        24.89        10.19 
TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 
        5.42         3.78         6.97         1.58        66.51         6.64 
TCGA-43-8116 TCGA-43-A474 TCGA-43-A475 TCGA-43-A56V TCGA-46-3768 TCGA-46-6025 
        6.35        11.61         9.73         5.06         9.96        10.65 
TCGA-46-6026 TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 TCGA-52-7811 
       13.87         0.39        29.95        17.79         5.42         8.75 
TCGA-52-7812 TCGA-56-1622 TCGA-56-6545 TCGA-56-6546 TCGA-56-7222 TCGA-56-7223 
       27.45        28.93         2.04         1.02         0.43         0.99 
TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 TCGA-56-7822 TCGA-56-8503 TCGA-56-8504 
        1.45         1.32         0.85         0.03         1.35         5.82 
TCGA-56-8624 TCGA-56-8625 TCGA-56-8626 TCGA-56-8628 TCGA-56-8629 TCGA-56-A4BX 
        1.18         2.07         0.56         0.53         1.12         1.51 
TCGA-56-A4BY TCGA-56-A4ZJ TCGA-56-A4ZK TCGA-56-A5DS TCGA-58-8386 TCGA-58-8387 
        0.99         1.02         0.13         0.26         0.03        13.25 
TCGA-58-8388 TCGA-58-8390 TCGA-58-8391 TCGA-58-8392 TCGA-58-8393 TCGA-58-A46J 
       12.43        29.95        71.24        16.47        34.78        64.87 
TCGA-58-A46K TCGA-58-A46M TCGA-58-A46N TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 
       34.36        23.24        17.72        21.07         3.58        12.23 
TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 TCGA-60-2709 TCGA-60-2711 TCGA-60-2712 
       10.22        96.82        37.94        49.48        41.39         9.01 
TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 
       50.33        35.34        48.49        42.61         3.16        32.28 
TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2737 
       35.90        23.57        26.79        11.77        16.96         2.01 
TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 TCGA-66-2756 TCGA-66-2757 
       21.07         0.99         1.02         2.01         0.99         0.99 
TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 
       20.98        25.02         0.99         2.01         1.02         2.01 
TCGA-66-2768 TCGA-66-2769 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 
        2.01         7.07        23.01        19.00         3.02         2.01 
TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 
       19.00        12.03         3.98        12.00        24.95         1.94 
TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2790 TCGA-66-2792 TCGA-66-2794 
       25.97        40.01        22.98        22.98        30.02        54.08 
TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 TCGA-68-7757 TCGA-77-6842 
        4.01        49.05         2.73         6.64         6.94        29.56 
TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 TCGA-77-7140 TCGA-77-7141 
       73.08        75.09        23.28        11.18        20.78         0.49 
TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 
       42.25        70.09       106.95         0.16        46.78        15.75 
TCGA-77-8007 TCGA-77-8008 TCGA-77-8009 TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 
        6.51        86.76        53.95        37.81        82.92        12.59 
TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 TCGA-77-8143 TCGA-77-8144 
       53.92        39.09        17.69       104.09        26.40        27.39 
TCGA-77-8145 TCGA-77-8150 TCGA-77-8156 TCGA-77-A5FZ TCGA-77-A5G3 TCGA-77-A5GB 
        6.97        54.41         0.33       126.18       117.57        30.81 
TCGA-77-A5GH TCGA-85-6560 TCGA-85-6798 TCGA-85-7696 TCGA-85-7697 TCGA-85-7699 
       23.44         0.36         1.12         0.59         0.33         0.03 
TCGA-85-7843 TCGA-85-7844 TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 
        1.15         1.25         0.85         1.97         0.53        16.77 
TCGA-85-8071 TCGA-85-8072 TCGA-85-8277 TCGA-85-8287 TCGA-85-8350 TCGA-85-8351 
       14.07         1.18         0.36         1.45         1.97         1.81 
TCGA-85-8353 TCGA-85-8354 TCGA-85-8479 TCGA-85-8481 TCGA-85-8580 TCGA-85-8582 
        1.78         2.01         0.72         0.66        14.60        13.91 
TCGA-85-8664 TCGA-85-8666 TCGA-85-A4CL TCGA-85-A4QR TCGA-85-A50M TCGA-85-A513 
        0.10        15.58         0.46         0.82         0.62         0.79 
TCGA-85-A53L TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 TCGA-90-7769 TCGA-90-A4ED 
        0.43        24.89         9.50         2.93        11.77         8.02 
TCGA-90-A4EE TCGA-92-7340 TCGA-92-7341 TCGA-92-8064 TCGA-92-8065 TCGA-94-7557 
       10.88         2.70         3.48         5.26         2.27         0.16 
TCGA-96-7544 TCGA-96-7545 TCGA-96-8169 TCGA-96-8170 TCGA-96-A4JK TCGA-96-A4JL 
       39.88        44.15         6.18         6.90         8.98         6.02 
TCGA-98-7454 TCGA-98-8020 TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 TCGA-J1-A4AH 
        8.42         2.73        13.58         7.33        10.13         7.30 
TCGA-L3-A4E7 TCGA-L3-A524 TCGA-LA-A446 TCGA-MF-A522 TCGA-NC-A5HE 
        1.15        14.76         1.18         3.02        56.61 

  5P LOSS MUTATED 5P LOSS WILD-TYPE 
             0.10              0.03 
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
           119.54            173.79 
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
            16.16             13.25 
[1] "0.1 - 119.5 (16.2)" "0.0 - 173.8 (13.2)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56V        TCGA-46-3768        TCGA-46-6025 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-5898 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED"   "5P LOSS MUTATED" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-56-7730        TCGA-56-7822        TCGA-56-8503        TCGA-56-8504 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-56-8622        TCGA-56-8624        TCGA-56-8625        TCGA-56-8626 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-56-A4BY        TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-58-8386        TCGA-58-8387        TCGA-58-8388        TCGA-58-8390 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-58-8391        TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-58-A46K        TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-60-2695        TCGA-60-2696        TCGA-60-2697        TCGA-60-2698 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-60-2703        TCGA-60-2704        TCGA-60-2706        TCGA-60-2707 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED"   "5P LOSS MUTATED" 
       TCGA-60-2708        TCGA-60-2709        TCGA-60-2710        TCGA-60-2711 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-60-2712        TCGA-60-2713        TCGA-60-2714        TCGA-60-2715 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-60-2716        TCGA-60-2719        TCGA-60-2720        TCGA-60-2721 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-60-2722        TCGA-60-2723        TCGA-60-2724        TCGA-60-2725 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-60-2726        TCGA-66-2727        TCGA-66-2734        TCGA-66-2737 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2753        TCGA-66-2754 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-66-2755        TCGA-66-2756        TCGA-66-2757        TCGA-66-2758 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-66-2759        TCGA-66-2763        TCGA-66-2765        TCGA-66-2766 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-66-2767        TCGA-66-2768        TCGA-66-2769        TCGA-66-2770 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-66-2771        TCGA-66-2773        TCGA-66-2777        TCGA-66-2778 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-66-2780        TCGA-66-2781        TCGA-66-2782        TCGA-66-2783 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-66-2785        TCGA-66-2786        TCGA-66-2787        TCGA-66-2788 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-66-2789        TCGA-66-2790        TCGA-66-2791        TCGA-66-2792 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-66-2793        TCGA-66-2794        TCGA-66-2795        TCGA-66-2800 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-68-7755        TCGA-68-7756        TCGA-68-7757        TCGA-68-8250 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-68-8251        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8007 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-77-8008        TCGA-77-8009        TCGA-77-8128        TCGA-77-8130 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-77-8131        TCGA-77-8133        TCGA-77-8136        TCGA-77-8138 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8140        TCGA-77-8143        TCGA-77-8144 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-77-8145        TCGA-77-8148        TCGA-77-8150        TCGA-77-8153 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ        TCGA-77-A5G3 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6560        TCGA-85-6561 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-7950 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-85-8048        TCGA-85-8049        TCGA-85-8052        TCGA-85-8070 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-85-8071        TCGA-85-8072        TCGA-85-8276        TCGA-85-8277 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-85-8287        TCGA-85-8288        TCGA-85-8350        TCGA-85-8351 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-85-8352        TCGA-85-8353        TCGA-85-8354        TCGA-85-8355 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-85-8479        TCGA-85-8481        TCGA-85-8580        TCGA-85-8582 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-85-8664        TCGA-85-8666        TCGA-85-A4CL        TCGA-85-A4QR 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-85-A50M        TCGA-85-A513        TCGA-85-A53L        TCGA-90-6837 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-90-A4ED        TCGA-90-A4EE        TCGA-92-7340        TCGA-92-7341 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-92-8063        TCGA-92-8064        TCGA-92-8065        TCGA-94-7033 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-94-7557        TCGA-94-7943        TCGA-96-7544        TCGA-96-7545 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-96-8169        TCGA-96-8170        TCGA-96-A4JK        TCGA-96-A4JL 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-NC-A5HI 
  "5P LOSS MUTATED" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56V        TCGA-46-3768        TCGA-46-6025 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-5898 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED"   "5P LOSS MUTATED" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-56-7730        TCGA-56-7822        TCGA-56-8503        TCGA-56-8504 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-56-8622        TCGA-56-8624        TCGA-56-8625        TCGA-56-8626 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-56-A4BY        TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-58-8386        TCGA-58-8387        TCGA-58-8388        TCGA-58-8390 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-58-8391        TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-58-A46K        TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-60-2695        TCGA-60-2696        TCGA-60-2697        TCGA-60-2698 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-60-2703        TCGA-60-2704        TCGA-60-2706        TCGA-60-2707 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED"   "5P LOSS MUTATED" 
       TCGA-60-2708        TCGA-60-2709        TCGA-60-2710        TCGA-60-2711 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-60-2712        TCGA-60-2713        TCGA-60-2714        TCGA-60-2715 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-60-2716        TCGA-60-2719        TCGA-60-2720        TCGA-60-2721 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-60-2722        TCGA-60-2723        TCGA-60-2724        TCGA-60-2725 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-60-2726        TCGA-66-2727        TCGA-66-2734        TCGA-66-2737 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2753        TCGA-66-2754 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-66-2755        TCGA-66-2756        TCGA-66-2757        TCGA-66-2758 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-66-2759        TCGA-66-2763        TCGA-66-2765        TCGA-66-2766 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-66-2767        TCGA-66-2768        TCGA-66-2769        TCGA-66-2770 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-66-2771        TCGA-66-2773        TCGA-66-2777        TCGA-66-2778 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-66-2780        TCGA-66-2781        TCGA-66-2782        TCGA-66-2783 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-66-2785        TCGA-66-2786        TCGA-66-2787        TCGA-66-2788 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-66-2789        TCGA-66-2790        TCGA-66-2791        TCGA-66-2792 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-66-2793        TCGA-66-2794        TCGA-66-2795        TCGA-66-2800 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-68-7755        TCGA-68-7756        TCGA-68-7757        TCGA-68-8250 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-68-8251        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8007 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-77-8008        TCGA-77-8009        TCGA-77-8128        TCGA-77-8130 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-77-8131        TCGA-77-8133        TCGA-77-8136        TCGA-77-8138 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8140        TCGA-77-8143        TCGA-77-8144 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-77-8145        TCGA-77-8148        TCGA-77-8150        TCGA-77-8153 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ        TCGA-77-A5G3 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6560        TCGA-85-6561 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-7950 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-85-8048        TCGA-85-8049        TCGA-85-8052        TCGA-85-8070 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-85-8071        TCGA-85-8072        TCGA-85-8276        TCGA-85-8277 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-85-8287        TCGA-85-8288        TCGA-85-8350        TCGA-85-8351 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-85-8352        TCGA-85-8353        TCGA-85-8354        TCGA-85-8355 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-85-8479        TCGA-85-8481        TCGA-85-8580        TCGA-85-8582 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-85-8664        TCGA-85-8666        TCGA-85-A4CL        TCGA-85-A4QR 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-85-A50M        TCGA-85-A513        TCGA-85-A53L        TCGA-90-6837 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-90-A4ED        TCGA-90-A4EE        TCGA-92-7340        TCGA-92-7341 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-92-8063        TCGA-92-8064        TCGA-92-8065        TCGA-94-7033 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-94-7557        TCGA-94-7943        TCGA-96-7544        TCGA-96-7545 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-96-8169        TCGA-96-8170        TCGA-96-A4JK        TCGA-96-A4JL 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-NC-A5HI 
  "5P LOSS MUTATED" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56V        TCGA-46-3768        TCGA-46-6025 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-5898 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED"   "5P LOSS MUTATED" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-56-7730        TCGA-56-7822        TCGA-56-8503        TCGA-56-8504 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-56-8622        TCGA-56-8624        TCGA-56-8625        TCGA-56-8626 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-56-A4BY        TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-58-8386        TCGA-58-8387        TCGA-58-8388        TCGA-58-8390 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-58-8391        TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-58-A46K        TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-60-2695        TCGA-60-2696        TCGA-60-2697        TCGA-60-2698 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-60-2703        TCGA-60-2704        TCGA-60-2706        TCGA-60-2707 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED"   "5P LOSS MUTATED" 
       TCGA-60-2708        TCGA-60-2709        TCGA-60-2710        TCGA-60-2711 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-60-2712        TCGA-60-2713        TCGA-60-2714        TCGA-60-2715 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-60-2716        TCGA-60-2719        TCGA-60-2720        TCGA-60-2721 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-60-2722        TCGA-60-2723        TCGA-60-2724        TCGA-60-2725 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-60-2726        TCGA-66-2727        TCGA-66-2734        TCGA-66-2737 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2753        TCGA-66-2754 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-66-2755        TCGA-66-2756        TCGA-66-2757        TCGA-66-2758 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-66-2759        TCGA-66-2763        TCGA-66-2765        TCGA-66-2766 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-66-2767        TCGA-66-2768        TCGA-66-2769        TCGA-66-2770 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-66-2771        TCGA-66-2773        TCGA-66-2777        TCGA-66-2778 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-66-2780        TCGA-66-2781        TCGA-66-2782        TCGA-66-2783 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-66-2785        TCGA-66-2786        TCGA-66-2787        TCGA-66-2788 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-66-2789        TCGA-66-2790        TCGA-66-2791        TCGA-66-2792 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-66-2793        TCGA-66-2794        TCGA-66-2795        TCGA-66-2800 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-68-7755        TCGA-68-7756        TCGA-68-7757        TCGA-68-8250 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-68-8251        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8007 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-77-8008        TCGA-77-8009        TCGA-77-8128        TCGA-77-8130 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-77-8131        TCGA-77-8133        TCGA-77-8136        TCGA-77-8138 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8140        TCGA-77-8143        TCGA-77-8144 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-77-8145        TCGA-77-8148        TCGA-77-8150        TCGA-77-8153 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ        TCGA-77-A5G3 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6560        TCGA-85-6561 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-7950 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-85-8048        TCGA-85-8049        TCGA-85-8052        TCGA-85-8070 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-85-8071        TCGA-85-8072        TCGA-85-8276        TCGA-85-8277 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-85-8287        TCGA-85-8288        TCGA-85-8350        TCGA-85-8351 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-85-8352        TCGA-85-8353        TCGA-85-8354        TCGA-85-8355 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-85-8479        TCGA-85-8481        TCGA-85-8580        TCGA-85-8582 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-85-8664        TCGA-85-8666        TCGA-85-A4CL        TCGA-85-A4QR 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-85-A50M        TCGA-85-A513        TCGA-85-A53L        TCGA-90-6837 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-90-A4ED        TCGA-90-A4EE        TCGA-92-7340        TCGA-92-7341 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-92-8063        TCGA-92-8064        TCGA-92-8065        TCGA-94-7033 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-94-7557        TCGA-94-7943        TCGA-96-7544        TCGA-96-7545 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-96-8169        TCGA-96-8170        TCGA-96-A4JK        TCGA-96-A4JL 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-NC-A5HI 
  "5P LOSS MUTATED" 
[1] "hr=" "1.4"
D49V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  5P LOSS MUTATED         0       13       19        0         8         6
  5P LOSS WILD-TYPE       1       55      114        1        42        65
                   vv
clus                STAGE IIIA STAGE IIIB STAGE IV
  5P LOSS MUTATED           11          4        0
  5P LOSS WILD-TYPE         43         16        5
D49V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  5P LOSS MUTATED    22  32   7   2
  5P LOSS WILD-TYPE  71 218  37  17
D49V4, multiclass
    clus
vv   5P LOSS MUTATED 5P LOSS WILD-TYPE
  T1              22                71
  T2              32               218
  T3               7                37
  T4               2                17
                   vv
clus                 N0  N1  N2  N3
  5P LOSS MUTATED    40  14   6   2
  5P LOSS WILD-TYPE 213  95  28   3
D49V5, multiclass
    clus
vv   5P LOSS MUTATED 5P LOSS WILD-TYPE
  N0              40               213
  N1              14                95
  N2               6                28
  N3               2                 3
                   vv
clus                 M0  M1  MX
  5P LOSS MUTATED    54   0   7
  5P LOSS WILD-TYPE 294   5  40
D49V6, multiclass
    clus
vv   5P LOSS MUTATED 5P LOSS WILD-TYPE
  M0              54               294
  M1               0                 5
  MX               7                40
D49V7, binary
                   cls
clus                  0   1
  5P LOSS MUTATED    13  50
  5P LOSS WILD-TYPE  88 255
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5P LOSS MUTATED     13   50
  5P LOSS WILD-TYPE   88  255
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  FEMALE              13                88
  MALE                50               255
D49V8, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  5P LOSS MUTATED                                       3
  5P LOSS WILD-TYPE                                     9
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  5P LOSS MUTATED                                        1
  5P LOSS WILD-TYPE                                      5
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  5P LOSS MUTATED                                         0
  5P LOSS WILD-TYPE                                       1
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  5P LOSS MUTATED                                                            59
  5P LOSS WILD-TYPE                                                         328
D49V9, multiclass
                                                             clus
vv                                                            5P LOSS MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     3
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                    1
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              59
                                                             clus
vv                                                            5P LOSS WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       9
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                      5
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               328
D49V10, binary
                   cls
clus                  0   1
  5P LOSS MUTATED     3  60
  5P LOSS WILD-TYPE   9 334
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5P LOSS MUTATED      3   60
  5P LOSS WILD-TYPE    9  334
     clus
vv    5P LOSS MUTATED 5P LOSS WILD-TYPE
  NO                3                 9
  YES              60               334
D49V11, continuous
D49V12, continuous
                   vv
clus                 R0  R1  R2  RX
  5P LOSS MUTATED    46   1   0   5
  5P LOSS WILD-TYPE 284   7   4  13
D49V13, multiclass
    clus
vv   5P LOSS MUTATED 5P LOSS WILD-TYPE
  R0              46               284
  R1               1                 7
  R2               0                 4
  RX               5                13

Clustering(50) Variable = 5Q LOSS MUTATION ANALYSIS
D50V1, survival
                   sevent
clus2                 0   1
  5Q LOSS MUTATED   149  72
  5Q LOSS WILD-TYPE  90  66
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
              221               156 
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
               72                66 
$`5Q LOSS MUTATED`
TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 TCGA-18-3414 
       81.07        79.46         4.80        46.52        11.34        13.02 
TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 
       59.51        28.34        24.92         6.15         2.79        90.51 
TCGA-21-1070 TCGA-21-1072 TCGA-21-1079 TCGA-21-1082 TCGA-21-5784 TCGA-21-5786 
      119.54        99.16        31.69       119.80        41.69        33.93 
TCGA-21-5787 TCGA-22-0940 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-4591 
       10.82        19.99         7.33         4.31         1.74        20.45 
TCGA-22-4593 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 
       35.08        38.17        34.75        13.12        32.02        19.30 
TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 
        9.53        11.77        31.73        64.90        63.52        14.60 
TCGA-22-5477 TCGA-22-5479 TCGA-22-5485 TCGA-22-5491 TCGA-33-4532 TCGA-33-4533 
       44.22        54.28        30.08        56.32         7.63       114.05 
TCGA-33-4538 TCGA-33-4547 TCGA-33-4586 TCGA-33-4587 TCGA-33-6737 TCGA-33-6738 
       97.94        43.10        14.07        54.44        19.76        26.99 
TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 
       61.61        31.50        28.96        32.84        31.23        50.24 
TCGA-34-5239 TCGA-34-5927 TCGA-34-5929 TCGA-34-7107 TCGA-37-4130 TCGA-37-4132 
       23.24        30.94         4.96         1.08         8.09         7.46 
TCGA-37-4133 TCGA-37-4135 TCGA-39-5011 TCGA-39-5016 TCGA-39-5024 TCGA-39-5027 
        7.82         6.81        47.80        74.07        70.03        60.76 
TCGA-39-5030 TCGA-39-5031 TCGA-39-5036 TCGA-39-5037 TCGA-43-2576 TCGA-43-2578 
        1.94        27.35        35.64        35.70        40.21        22.49 
TCGA-43-2581 TCGA-43-3394 TCGA-43-5668 TCGA-43-5670 TCGA-43-6647 TCGA-43-6770 
       38.66        27.02        11.47        18.05        24.89        10.19 
TCGA-43-6773 TCGA-43-7656 TCGA-43-8116 TCGA-43-8118 TCGA-43-A474 TCGA-46-3768 
        3.78         6.97         6.35         2.93        11.61         9.96 
TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 
       10.65        13.87         0.39        29.95        17.79         5.42 
TCGA-52-7810 TCGA-52-7811 TCGA-56-5897 TCGA-56-5898 TCGA-56-6546 TCGA-56-7221 
       30.31         8.75         0.10        18.25         1.02         0.99 
TCGA-56-7579 TCGA-56-7582 TCGA-56-7730 TCGA-56-7822 TCGA-56-8622 TCGA-56-8625 
        1.45         0.85         0.20         0.03         1.78         2.07 
TCGA-56-8628 TCGA-56-8629 TCGA-56-A49D TCGA-56-A4BX TCGA-56-A4BY TCGA-56-A4ZJ 
        0.53         1.12         0.99         1.51         0.99         1.02 
TCGA-56-A4ZK TCGA-56-A5DS TCGA-58-8387 TCGA-58-8388 TCGA-58-8390 TCGA-58-8391 
        0.13         0.26        13.25        12.43        29.95        71.24 
TCGA-58-8392 TCGA-58-A46J TCGA-58-A46K TCGA-58-A46L TCGA-60-2695 TCGA-60-2696 
       16.47        64.87        34.36        36.59        21.07         3.58 
TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 
       92.71        21.70        80.42        49.48        66.51        41.39 
TCGA-60-2713 TCGA-60-2714 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 
       56.91        50.33         3.16        32.28        29.85        35.90 
TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 TCGA-66-2753 TCGA-66-2755 
       16.96        43.10         2.01        21.07         1.02         0.92 
TCGA-66-2756 TCGA-66-2757 TCGA-66-2759 TCGA-66-2763 TCGA-66-2766 TCGA-66-2769 
        0.99         0.99        25.02         0.99         1.02         7.07 
TCGA-66-2773 TCGA-66-2777 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2785 
        3.02         2.01        12.03         3.98        12.00         1.94 
TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2793 TCGA-66-2794 
       40.01        22.98         4.04         5.03        10.06        54.08 
TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 TCGA-68-7757 TCGA-68-8250 TCGA-68-8251 
       49.05         2.73         6.64         6.94         8.02         3.12 
TCGA-77-7139 TCGA-77-7141 TCGA-77-7142 TCGA-77-7338 TCGA-77-8007 TCGA-77-8128 
       89.95         0.49        42.25         0.16         6.51        37.81 
TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 TCGA-77-8143 TCGA-77-8145 
       39.09        17.69       104.09        11.54        26.40         6.97 
TCGA-77-8148 TCGA-77-8153 TCGA-77-8154 TCGA-77-A5G3 TCGA-77-A5GH TCGA-85-6560 
        9.63        55.33        35.90       117.57        23.44         0.36 
TCGA-85-6561 TCGA-85-6798 TCGA-85-7697 TCGA-85-7698 TCGA-85-7843 TCGA-85-7950 
        0.79         1.12         0.33         1.61         1.15         1.97 
TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 TCGA-85-8276 TCGA-85-8277 
        0.53        16.77        14.07         1.18         0.43         0.36 
TCGA-85-8287 TCGA-85-8288 TCGA-85-8351 TCGA-85-8352 TCGA-85-8353 TCGA-85-8354 
        1.45         1.78         1.81         2.20         1.78         2.01 
TCGA-85-8355 TCGA-85-8481 TCGA-85-8580 TCGA-85-8666 TCGA-85-A4QR TCGA-90-7766 
        0.66         0.66        14.60        15.58         0.82         9.50 
TCGA-90-7767 TCGA-90-7964 TCGA-90-A4EE TCGA-92-8063 TCGA-92-8064 TCGA-94-7033 
        2.93        14.07        10.88         4.01         5.26         2.86 
TCGA-94-7557 TCGA-94-7943 TCGA-96-7544 TCGA-96-7545 TCGA-96-A4JK TCGA-98-8021 
        0.16        11.70        39.88        44.15         8.98        13.58 
TCGA-98-8022 TCGA-98-8023 TCGA-L3-A524 TCGA-NC-A5HG TCGA-NC-A5HI 
        7.33        10.13        14.76        50.86        37.32 

$`5Q LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3419 TCGA-18-3421 TCGA-18-5592 TCGA-18-5595 
       12.16         4.47         1.61        43.76         3.02        27.16 
TCGA-21-1071 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1080 
       46.88        70.13        60.89        34.78        15.55       122.43 
TCGA-21-1081 TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 TCGA-21-A5DI TCGA-22-1000 
        9.30         8.78        31.63        88.08        32.19        14.93 
TCGA-22-1005 TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 TCGA-22-4594 TCGA-22-4595 
       64.21        14.10        27.02        48.82        48.33        24.13 
TCGA-22-4596 TCGA-22-5478 TCGA-22-5480 TCGA-22-5481 TCGA-22-5482 TCGA-22-5483 
        0.56         0.79        71.34        79.20        11.74        18.84 
TCGA-22-5489 TCGA-22-5492 TCGA-22-A5C4 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 
       62.86        16.60         0.95       173.79       103.53       141.34 
TCGA-33-4589 TCGA-34-2596 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5240 
       10.98         2.63        67.79        56.38         9.04        12.00 
TCGA-34-5241 TCGA-34-5928 TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 
       14.07        18.12         3.95         0.43         0.39         6.54 
TCGA-37-4141 TCGA-37-5819 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5028 
        0.39         3.39        44.71        68.58        55.17         1.71 
TCGA-39-5029 TCGA-39-5034 TCGA-39-5035 TCGA-39-5039 TCGA-39-5040 TCGA-43-3920 
       24.33        36.39        15.58        17.88        17.06        33.07 
TCGA-43-6143 TCGA-43-6771 TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 TCGA-43-A475 
       12.36         5.42         1.58        66.51         6.64         9.73 
TCGA-43-A56V TCGA-51-4080 TCGA-52-7812 TCGA-56-1622 TCGA-56-6545 TCGA-56-7222 
        5.06         0.39        27.45        28.93         2.04         0.43 
TCGA-56-7223 TCGA-56-7580 TCGA-56-8503 TCGA-56-8504 TCGA-56-8624 TCGA-56-8626 
        0.99         1.32         1.35         5.82         1.18         0.56 
TCGA-58-8386 TCGA-58-8393 TCGA-58-A46M TCGA-58-A46N TCGA-60-2697 TCGA-60-2698 
        0.03        34.78        23.24        17.72        12.23        10.22 
TCGA-60-2703 TCGA-60-2704 TCGA-60-2712 TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 
       96.82        37.94         9.01        35.34        48.49        42.61 
TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2744 TCGA-66-2754 TCGA-66-2758 
       23.57        26.79        11.77         0.99         2.01        20.98 
TCGA-66-2765 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2778 
        2.01         2.01         2.01        23.01        19.00        19.00 
TCGA-66-2783 TCGA-66-2786 TCGA-66-2790 TCGA-66-2792 TCGA-66-2795 TCGA-77-6842 
       24.95        25.97        22.98        30.02         4.01        29.56 
TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 TCGA-77-7140 TCGA-77-7335 
       73.08        75.09        23.28        11.18        20.78        70.09 
TCGA-77-7337 TCGA-77-7463 TCGA-77-7465 TCGA-77-8008 TCGA-77-8009 TCGA-77-8130 
      106.95        46.78        15.75        86.76        53.95        82.92 
TCGA-77-8131 TCGA-77-8133 TCGA-77-8144 TCGA-77-8150 TCGA-77-8156 TCGA-77-A5FZ 
       12.59        53.92        27.39        54.41         0.33       126.18 
TCGA-77-A5GB TCGA-85-7696 TCGA-85-7699 TCGA-85-7844 TCGA-85-8048 TCGA-85-8049 
       30.81         0.59         0.03         1.25         0.85         1.97 
TCGA-85-8350 TCGA-85-8479 TCGA-85-8582 TCGA-85-8664 TCGA-85-A4CL TCGA-85-A50M 
        1.97         0.72        13.91         0.10         0.46         0.62 
TCGA-85-A513 TCGA-85-A53L TCGA-90-6837 TCGA-90-7769 TCGA-90-A4ED TCGA-92-7340 
        0.79         0.43        24.89        11.77         8.02         2.70 
TCGA-92-7341 TCGA-92-8065 TCGA-96-8169 TCGA-96-8170 TCGA-96-A4JL TCGA-98-7454 
        3.48         2.27         6.18         6.90         6.02         8.42 
TCGA-98-8020 TCGA-J1-A4AH TCGA-L3-A4E7 TCGA-LA-A446 TCGA-MF-A522 TCGA-NC-A5HE 
        2.73         7.30         1.15         1.18         3.02        56.61 

  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
             0.03              0.03 
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
           119.80            173.79 
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
           13.120            14.085 
[1] "0.0 - 119.8 (13.1)" "0.0 - 173.8 (14.1)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-43-A475        TCGA-43-A56V        TCGA-46-3768        TCGA-46-6025 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-5898 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-56-7730        TCGA-56-7822        TCGA-56-8503        TCGA-56-8504 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-56-8622        TCGA-56-8624        TCGA-56-8625        TCGA-56-8626 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-56-A4BY        TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-58-8386        TCGA-58-8387        TCGA-58-8388        TCGA-58-8390 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-58-8391        TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-58-A46K        TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-60-2695        TCGA-60-2696        TCGA-60-2697        TCGA-60-2698 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-60-2703        TCGA-60-2704        TCGA-60-2706        TCGA-60-2707 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-60-2708        TCGA-60-2709        TCGA-60-2710        TCGA-60-2711 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-60-2712        TCGA-60-2713        TCGA-60-2714        TCGA-60-2715 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-60-2716        TCGA-60-2719        TCGA-60-2720        TCGA-60-2721 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-60-2722        TCGA-60-2723        TCGA-60-2724        TCGA-60-2725 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-60-2726        TCGA-66-2727        TCGA-66-2734        TCGA-66-2737 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2753        TCGA-66-2754 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-66-2755        TCGA-66-2756        TCGA-66-2757        TCGA-66-2758 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-66-2759        TCGA-66-2763        TCGA-66-2765        TCGA-66-2766 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-66-2767        TCGA-66-2768        TCGA-66-2769        TCGA-66-2770 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-66-2771        TCGA-66-2773        TCGA-66-2777        TCGA-66-2778 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-66-2780        TCGA-66-2781        TCGA-66-2782        TCGA-66-2783 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-66-2785        TCGA-66-2786        TCGA-66-2787        TCGA-66-2788 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-66-2789        TCGA-66-2790        TCGA-66-2791        TCGA-66-2792 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-66-2793        TCGA-66-2794        TCGA-66-2795        TCGA-66-2800 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-68-7755        TCGA-68-7756        TCGA-68-7757        TCGA-68-8250 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-68-8251        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8007 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-77-8008        TCGA-77-8009        TCGA-77-8128        TCGA-77-8130 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-77-8131        TCGA-77-8133        TCGA-77-8136        TCGA-77-8138 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-77-8139        TCGA-77-8140        TCGA-77-8143        TCGA-77-8144 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-77-8145        TCGA-77-8148        TCGA-77-8150        TCGA-77-8153 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ        TCGA-77-A5G3 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6560        TCGA-85-6561 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-7950 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-85-8048        TCGA-85-8049        TCGA-85-8052        TCGA-85-8070 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-85-8071        TCGA-85-8072        TCGA-85-8276        TCGA-85-8277 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-85-8287        TCGA-85-8288        TCGA-85-8350        TCGA-85-8351 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-85-8352        TCGA-85-8353        TCGA-85-8354        TCGA-85-8355 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-85-8479        TCGA-85-8481        TCGA-85-8580        TCGA-85-8582 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-85-8664        TCGA-85-8666        TCGA-85-A4CL        TCGA-85-A4QR 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-85-A50M        TCGA-85-A513        TCGA-85-A53L        TCGA-90-6837 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-90-A4ED        TCGA-90-A4EE        TCGA-92-7340        TCGA-92-7341 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-92-8063        TCGA-92-8064        TCGA-92-8065        TCGA-94-7033 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-94-7557        TCGA-94-7943        TCGA-96-7544        TCGA-96-7545 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-96-8169        TCGA-96-8170        TCGA-96-A4JK        TCGA-96-A4JL 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-NC-A5HI 
  "5Q LOSS MUTATED" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
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"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
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  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-43-A475        TCGA-43-A56V        TCGA-46-3768        TCGA-46-6025 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
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"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
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  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-56-8622        TCGA-56-8624        TCGA-56-8625        TCGA-56-8626 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-56-A4BY        TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
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"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
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  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-58-A46K        TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
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  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-60-2703        TCGA-60-2704        TCGA-60-2706        TCGA-60-2707 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
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  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
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"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
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"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
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  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
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"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
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  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
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  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
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  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
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"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-66-2771        TCGA-66-2773        TCGA-66-2777        TCGA-66-2778 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-66-2780        TCGA-66-2781        TCGA-66-2782        TCGA-66-2783 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-66-2785        TCGA-66-2786        TCGA-66-2787        TCGA-66-2788 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-66-2789        TCGA-66-2790        TCGA-66-2791        TCGA-66-2792 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-66-2793        TCGA-66-2794        TCGA-66-2795        TCGA-66-2800 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-68-7755        TCGA-68-7756        TCGA-68-7757        TCGA-68-8250 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-68-8251        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
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"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
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  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8007 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-77-8008        TCGA-77-8009        TCGA-77-8128        TCGA-77-8130 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-77-8131        TCGA-77-8133        TCGA-77-8136        TCGA-77-8138 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-77-8139        TCGA-77-8140        TCGA-77-8143        TCGA-77-8144 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-77-8145        TCGA-77-8148        TCGA-77-8150        TCGA-77-8153 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ        TCGA-77-A5G3 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
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"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
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  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
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"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
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"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
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  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-85-8287        TCGA-85-8288        TCGA-85-8350        TCGA-85-8351 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-85-8352        TCGA-85-8353        TCGA-85-8354        TCGA-85-8355 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-85-8479        TCGA-85-8481        TCGA-85-8580        TCGA-85-8582 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-85-8664        TCGA-85-8666        TCGA-85-A4CL        TCGA-85-A4QR 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-85-A50M        TCGA-85-A513        TCGA-85-A53L        TCGA-90-6837 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-90-A4ED        TCGA-90-A4EE        TCGA-92-7340        TCGA-92-7341 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-92-8063        TCGA-92-8064        TCGA-92-8065        TCGA-94-7033 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-94-7557        TCGA-94-7943        TCGA-96-7544        TCGA-96-7545 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-96-8169        TCGA-96-8170        TCGA-96-A4JK        TCGA-96-A4JL 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
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"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
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"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
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  "5Q LOSS MUTATED" 
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"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
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  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
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  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
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"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
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"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
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  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
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"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
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  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
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  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
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"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
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"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
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"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
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  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
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"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-43-A475        TCGA-43-A56V        TCGA-46-3768        TCGA-46-6025 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-5898 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-56-7730        TCGA-56-7822        TCGA-56-8503        TCGA-56-8504 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-56-8622        TCGA-56-8624        TCGA-56-8625        TCGA-56-8626 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-56-A4BY        TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-58-8386        TCGA-58-8387        TCGA-58-8388        TCGA-58-8390 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-58-8391        TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-58-A46K        TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-60-2695        TCGA-60-2696        TCGA-60-2697        TCGA-60-2698 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-60-2703        TCGA-60-2704        TCGA-60-2706        TCGA-60-2707 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-60-2708        TCGA-60-2709        TCGA-60-2710        TCGA-60-2711 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-60-2712        TCGA-60-2713        TCGA-60-2714        TCGA-60-2715 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-60-2716        TCGA-60-2719        TCGA-60-2720        TCGA-60-2721 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-60-2722        TCGA-60-2723        TCGA-60-2724        TCGA-60-2725 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-60-2726        TCGA-66-2727        TCGA-66-2734        TCGA-66-2737 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2753        TCGA-66-2754 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-66-2755        TCGA-66-2756        TCGA-66-2757        TCGA-66-2758 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-66-2759        TCGA-66-2763        TCGA-66-2765        TCGA-66-2766 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-66-2767        TCGA-66-2768        TCGA-66-2769        TCGA-66-2770 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-66-2771        TCGA-66-2773        TCGA-66-2777        TCGA-66-2778 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-66-2780        TCGA-66-2781        TCGA-66-2782        TCGA-66-2783 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-66-2785        TCGA-66-2786        TCGA-66-2787        TCGA-66-2788 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-66-2789        TCGA-66-2790        TCGA-66-2791        TCGA-66-2792 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-66-2793        TCGA-66-2794        TCGA-66-2795        TCGA-66-2800 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-68-7755        TCGA-68-7756        TCGA-68-7757        TCGA-68-8250 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-68-8251        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8007 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-77-8008        TCGA-77-8009        TCGA-77-8128        TCGA-77-8130 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-77-8131        TCGA-77-8133        TCGA-77-8136        TCGA-77-8138 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-77-8139        TCGA-77-8140        TCGA-77-8143        TCGA-77-8144 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-77-8145        TCGA-77-8148        TCGA-77-8150        TCGA-77-8153 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ        TCGA-77-A5G3 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6560        TCGA-85-6561 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-7950 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-85-8048        TCGA-85-8049        TCGA-85-8052        TCGA-85-8070 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-85-8071        TCGA-85-8072        TCGA-85-8276        TCGA-85-8277 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-85-8287        TCGA-85-8288        TCGA-85-8350        TCGA-85-8351 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-85-8352        TCGA-85-8353        TCGA-85-8354        TCGA-85-8355 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-85-8479        TCGA-85-8481        TCGA-85-8580        TCGA-85-8582 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-85-8664        TCGA-85-8666        TCGA-85-A4CL        TCGA-85-A4QR 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-85-A50M        TCGA-85-A513        TCGA-85-A53L        TCGA-90-6837 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-90-A4ED        TCGA-90-A4EE        TCGA-92-7340        TCGA-92-7341 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-92-8063        TCGA-92-8064        TCGA-92-8065        TCGA-94-7033 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-94-7557        TCGA-94-7943        TCGA-96-7544        TCGA-96-7545 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-96-8169        TCGA-96-8170        TCGA-96-A4JK        TCGA-96-A4JL 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-NC-A5HI 
  "5Q LOSS MUTATED" 
[1] "hr=" "1.2"
D50V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  5Q LOSS MUTATED         0       42       80        1        30        30
  5Q LOSS WILD-TYPE       1       26       53        0        20        41
                   vv
clus                STAGE IIIA STAGE IIIB STAGE IV
  5Q LOSS MUTATED           36         13        4
  5Q LOSS WILD-TYPE         18          7        1
D50V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  5Q LOSS MUTATED    56 145  24  13
  5Q LOSS WILD-TYPE  37 105  20   6
D50V4, multiclass
    clus
vv   5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  T1              56                37
  T2             145               105
  T3              24                20
  T4              13                 6
                   vv
clus                 N0  N1  N2  N3
  5Q LOSS MUTATED   157  57  21   2
  5Q LOSS WILD-TYPE  96  52  13   3
D50V5, multiclass
    clus
vv   5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  N0             157                96
  N1              57                52
  N2              21                13
  N3               2                 3
                   vv
clus                 M0  M1  MX
  5Q LOSS MUTATED   201   4  31
  5Q LOSS WILD-TYPE 147   1  16
D50V6, multiclass
    clus
vv   5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  M0             201               147
  M1               4                 1
  MX              31                16
D50V7, binary
                   cls
clus                  0   1
  5Q LOSS MUTATED    62 176
  5Q LOSS WILD-TYPE  39 129
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5Q LOSS MUTATED     62  176
  5Q LOSS WILD-TYPE   39  129
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  FEMALE              62                39
  MALE               176               129
D50V8, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  5Q LOSS MUTATED                                       8
  5Q LOSS WILD-TYPE                                     4
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  5Q LOSS MUTATED                                        2
  5Q LOSS WILD-TYPE                                      4
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  5Q LOSS MUTATED                                         1
  5Q LOSS WILD-TYPE                                       0
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  5Q LOSS MUTATED                                                           227
  5Q LOSS WILD-TYPE                                                         160
D50V9, multiclass
                                                             clus
vv                                                            5Q LOSS MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     8
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                    2
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                   1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             227
                                                             clus
vv                                                            5Q LOSS WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       4
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                      4
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                     0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               160
D50V10, binary
                   cls
clus                  0   1
  5Q LOSS MUTATED     9 229
  5Q LOSS WILD-TYPE   3 165
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5Q LOSS MUTATED      9  229
  5Q LOSS WILD-TYPE    3  165
     clus
vv    5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  NO                9                 3
  YES             229               165
D50V11, continuous
D50V12, continuous
                   vv
clus                 R0  R1  R2  RX
  5Q LOSS MUTATED   187   6   2  11
  5Q LOSS WILD-TYPE 143   2   2   7
D50V13, multiclass
    clus
vv   5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  R0             187               143
  R1               6                 2
  R2               2                 2
  RX              11                 7

Clustering(51) Variable = 6P LOSS MUTATION ANALYSIS
D51V1, survival
                   sevent
clus2                 0   1
  6P LOSS MUTATED    48  33
  6P LOSS WILD-TYPE 191 105
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
               81               296 
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
               33               105 
$`6P LOSS MUTATED`
TCGA-18-3408 TCGA-18-3412 TCGA-18-3415 TCGA-18-3416 TCGA-18-4083 TCGA-18-4721 
       81.07        11.34        59.51        28.34         6.15        90.51 
TCGA-18-5592 TCGA-21-1076 TCGA-21-5783 TCGA-22-0940 TCGA-22-1012 TCGA-22-4595 
        3.02        60.89        88.08        19.99        14.10        24.13 
TCGA-22-4596 TCGA-22-4599 TCGA-22-4609 TCGA-22-5473 TCGA-22-5477 TCGA-22-5478 
        0.56        38.17         9.53        63.52        44.22         0.79 
TCGA-22-5479 TCGA-22-5483 TCGA-22-5492 TCGA-33-4547 TCGA-33-4583 TCGA-34-2596 
       54.28        18.84        16.60        43.10       141.34         2.63 
TCGA-34-2604 TCGA-37-5819 TCGA-39-5016 TCGA-39-5021 TCGA-39-5027 TCGA-39-5034 
       31.50         3.39        74.07        68.58        60.76        36.39 
TCGA-39-5037 TCGA-39-5039 TCGA-43-6143 TCGA-43-8115 TCGA-43-8118 TCGA-43-A474 
       35.70        17.88        12.36         6.64         2.93        11.61 
TCGA-43-A475 TCGA-43-A56V TCGA-46-3768 TCGA-46-6025 TCGA-51-4081 TCGA-52-7622 
        9.73         5.06         9.96        10.65        29.95        17.79 
TCGA-56-7579 TCGA-56-7582 TCGA-56-8624 TCGA-56-A4ZK TCGA-58-8386 TCGA-60-2698 
        1.45         0.85         1.18         0.13         0.03        10.22 
TCGA-60-2707 TCGA-60-2722 TCGA-60-2726 TCGA-66-2758 TCGA-66-2780 TCGA-66-2782 
       21.70        29.85        11.77        20.98        12.03        12.00 
TCGA-66-2786 TCGA-66-2789 TCGA-66-2792 TCGA-66-2794 TCGA-68-7755 TCGA-68-7756 
       25.97         4.04        30.02        54.08         2.73         6.64 
TCGA-77-8007 TCGA-77-8009 TCGA-77-8128 TCGA-77-8131 TCGA-77-8140 TCGA-77-8150 
        6.51        53.95        37.81        12.59        11.54        54.41 
TCGA-77-A5G3 TCGA-85-7696 TCGA-85-7698 TCGA-85-7950 TCGA-85-8049 TCGA-85-8070 
      117.57         0.59         1.61         1.97         1.97        16.77 
TCGA-85-8277 TCGA-85-8666 TCGA-90-7767 TCGA-92-7341 TCGA-92-8064 TCGA-92-8065 
        0.36        15.58         2.93         3.48         5.26         2.27 
TCGA-96-7544 TCGA-96-A4JK TCGA-J1-A4AH 
       39.88         8.98         7.30 

$`6P LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 TCGA-18-3414 
       12.16         4.47        79.46         4.80        46.52        13.02 
TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4086 TCGA-18-5595 TCGA-21-1070 
       24.92         1.61        43.76         2.79        27.16       119.54 
TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 TCGA-21-1077 TCGA-21-1078 TCGA-21-1079 
       46.88        99.16        70.13        34.78        15.55        31.69 
TCGA-21-1080 TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 TCGA-21-5784 
      122.43         9.30       119.80         8.78        31.63        41.69 
TCGA-21-5786 TCGA-21-5787 TCGA-21-A5DI TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 
       33.93        10.82        32.19         7.33        14.93         4.31 
TCGA-22-1005 TCGA-22-1011 TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 TCGA-22-4593 
       64.21         1.74        27.02        48.82        20.45        35.08 
TCGA-22-4594 TCGA-22-4601 TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 TCGA-22-4613 
       48.33        34.75        13.12        32.02        19.30        11.77 
TCGA-22-5471 TCGA-22-5472 TCGA-22-5474 TCGA-22-5480 TCGA-22-5481 TCGA-22-5482 
       31.73        64.90        14.60        71.34        79.20        11.74 
TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-A5C4 TCGA-33-4532 TCGA-33-4533 
       30.08        62.86        56.32         0.95         7.63       114.05 
TCGA-33-4538 TCGA-33-4566 TCGA-33-4582 TCGA-33-4586 TCGA-33-4587 TCGA-33-4589 
       97.94       173.79       103.53        14.07        54.44        10.98 
TCGA-33-6737 TCGA-33-6738 TCGA-34-2600 TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 
       19.76        26.99        61.61        28.96        32.84        31.23 
TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 
       50.24        67.79        56.38         9.04        23.24        12.00 
TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 
       14.07        30.94        18.12         4.96         1.08         3.95 
TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 
        0.43         0.39         6.54         8.09         7.46         7.82 
TCGA-37-4135 TCGA-37-4141 TCGA-39-5011 TCGA-39-5019 TCGA-39-5022 TCGA-39-5024 
        6.81         0.39        47.80        44.71        55.17        70.03 
TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 
        1.71        24.33         1.94        27.35        15.58        35.64 
TCGA-39-5040 TCGA-43-2576 TCGA-43-2578 TCGA-43-2581 TCGA-43-3394 TCGA-43-3920 
       17.06        40.21        22.49        38.66        27.02        33.07 
TCGA-43-5668 TCGA-43-5670 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 
       11.47        18.05        24.89        10.19         5.42         3.78 
TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 TCGA-43-8116 TCGA-46-6026 TCGA-51-4079 
        6.97         1.58        66.51         6.35        13.87         0.39 
TCGA-51-4080 TCGA-52-7809 TCGA-52-7810 TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 
        0.39         5.42        30.31         8.75        27.45        28.93 
TCGA-56-5897 TCGA-56-5898 TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 
        0.10        18.25         2.04         1.02         0.99         0.43 
TCGA-56-7223 TCGA-56-7580 TCGA-56-7730 TCGA-56-7822 TCGA-56-8503 TCGA-56-8504 
        0.99         1.32         0.20         0.03         1.35         5.82 
TCGA-56-8622 TCGA-56-8625 TCGA-56-8626 TCGA-56-8628 TCGA-56-8629 TCGA-56-A49D 
        1.78         2.07         0.56         0.53         1.12         0.99 
TCGA-56-A4BX TCGA-56-A4BY TCGA-56-A4ZJ TCGA-56-A5DS TCGA-58-8387 TCGA-58-8388 
        1.51         0.99         1.02         0.26        13.25        12.43 
TCGA-58-8390 TCGA-58-8391 TCGA-58-8392 TCGA-58-8393 TCGA-58-A46J TCGA-58-A46K 
       29.95        71.24        16.47        34.78        64.87        34.36 
TCGA-58-A46L TCGA-58-A46M TCGA-58-A46N TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 
       36.59        23.24        17.72        21.07         3.58        12.23 
TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 
       96.82        37.94        92.71        80.42        49.48        66.51 
TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 
       41.39         9.01        56.91        50.33        35.34        48.49 
TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 
       42.61         3.16        32.28        35.90        23.57        26.79 
TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 
       16.96        43.10         2.01        21.07         0.99         1.02 
TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2759 TCGA-66-2763 
        2.01         0.92         0.99         0.99        25.02         0.99 
TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 TCGA-66-2770 
        2.01         1.02         2.01         2.01         7.07        23.01 
TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2781 TCGA-66-2783 
       19.00         3.02         2.01        19.00         3.98        24.95 
TCGA-66-2785 TCGA-66-2787 TCGA-66-2788 TCGA-66-2790 TCGA-66-2791 TCGA-66-2793 
        1.94        40.01        22.98        22.98         5.03        10.06 
TCGA-66-2795 TCGA-66-2800 TCGA-68-7757 TCGA-68-8250 TCGA-68-8251 TCGA-77-6842 
        4.01        49.05         6.94         8.02         3.12        29.56 
TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 TCGA-77-7140 
       73.08        75.09        23.28        11.18        89.95        20.78 
TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 
        0.49        42.25        70.09       106.95         0.16        46.78 
TCGA-77-7465 TCGA-77-8008 TCGA-77-8130 TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 
       15.75        86.76        82.92        53.92        39.09        17.69 
TCGA-77-8139 TCGA-77-8143 TCGA-77-8144 TCGA-77-8145 TCGA-77-8148 TCGA-77-8153 
      104.09        26.40        27.39         6.97         9.63        55.33 
TCGA-77-8154 TCGA-77-8156 TCGA-77-A5FZ TCGA-77-A5GB TCGA-77-A5GH TCGA-85-6560 
       35.90         0.33       126.18        30.81        23.44         0.36 
TCGA-85-6561 TCGA-85-6798 TCGA-85-7697 TCGA-85-7699 TCGA-85-7843 TCGA-85-7844 
        0.79         1.12         0.33         0.03         1.15         1.25 
TCGA-85-8048 TCGA-85-8052 TCGA-85-8071 TCGA-85-8072 TCGA-85-8276 TCGA-85-8287 
        0.85         0.53        14.07         1.18         0.43         1.45 
TCGA-85-8288 TCGA-85-8350 TCGA-85-8351 TCGA-85-8352 TCGA-85-8353 TCGA-85-8354 
        1.78         1.97         1.81         2.20         1.78         2.01 
TCGA-85-8355 TCGA-85-8479 TCGA-85-8481 TCGA-85-8580 TCGA-85-8582 TCGA-85-8664 
        0.66         0.72         0.66        14.60        13.91         0.10 
TCGA-85-A4CL TCGA-85-A4QR TCGA-85-A50M TCGA-85-A513 TCGA-85-A53L TCGA-90-6837 
        0.46         0.82         0.62         0.79         0.43        24.89 
TCGA-90-7766 TCGA-90-7769 TCGA-90-7964 TCGA-90-A4ED TCGA-90-A4EE TCGA-92-7340 
        9.50        11.77        14.07         8.02        10.88         2.70 
TCGA-92-8063 TCGA-94-7033 TCGA-94-7557 TCGA-94-7943 TCGA-96-7545 TCGA-96-8169 
        4.01         2.86         0.16        11.70        44.15         6.18 
TCGA-96-8170 TCGA-96-A4JL TCGA-98-7454 TCGA-98-8020 TCGA-98-8021 TCGA-98-8022 
        6.90         6.02         8.42         2.73        13.58         7.33 
TCGA-98-8023 TCGA-L3-A4E7 TCGA-L3-A524 TCGA-LA-A446 TCGA-MF-A522 TCGA-NC-A5HE 
       10.13         1.15        14.76         1.18         3.02        56.61 
TCGA-NC-A5HG TCGA-NC-A5HI 
       50.86        37.32 

  6P LOSS MUTATED 6P LOSS WILD-TYPE 
             0.03              0.03 
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
           141.34            173.79 
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
            12.36             13.89 
[1] "0.0 - 141.3 (12.4)" "0.0 - 173.8 (13.9)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
  "6P LOSS MUTATED"   "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED"   "6P LOSS MUTATED" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" 
       TCGA-43-A475        TCGA-43-A56V        TCGA-46-3768        TCGA-46-6025 
  "6P LOSS MUTATED"   "6P LOSS MUTATED"   "6P LOSS MUTATED"   "6P LOSS MUTATED" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-5898 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-56-7730        TCGA-56-7822        TCGA-56-8503        TCGA-56-8504 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-56-8622        TCGA-56-8624        TCGA-56-8625        TCGA-56-8626 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-56-A4BY        TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-58-8386        TCGA-58-8387        TCGA-58-8388        TCGA-58-8390 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-58-8391        TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-58-A46K        TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-60-2695        TCGA-60-2696        TCGA-60-2697        TCGA-60-2698 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-60-2703        TCGA-60-2704        TCGA-60-2706        TCGA-60-2707 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-60-2708        TCGA-60-2709        TCGA-60-2710        TCGA-60-2711 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-60-2712        TCGA-60-2713        TCGA-60-2714        TCGA-60-2715 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-60-2716        TCGA-60-2719        TCGA-60-2720        TCGA-60-2721 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-60-2722        TCGA-60-2723        TCGA-60-2724        TCGA-60-2725 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-60-2726        TCGA-66-2727        TCGA-66-2734        TCGA-66-2737 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2753        TCGA-66-2754 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-66-2755        TCGA-66-2756        TCGA-66-2757        TCGA-66-2758 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-66-2759        TCGA-66-2763        TCGA-66-2765        TCGA-66-2766 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-66-2767        TCGA-66-2768        TCGA-66-2769        TCGA-66-2770 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-66-2771        TCGA-66-2773        TCGA-66-2777        TCGA-66-2778 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-66-2780        TCGA-66-2781        TCGA-66-2782        TCGA-66-2783 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-66-2785        TCGA-66-2786        TCGA-66-2787        TCGA-66-2788 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-66-2789        TCGA-66-2790        TCGA-66-2791        TCGA-66-2792 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-66-2793        TCGA-66-2794        TCGA-66-2795        TCGA-66-2800 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-68-7755        TCGA-68-7756        TCGA-68-7757        TCGA-68-8250 
  "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-68-8251        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8007 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-77-8008        TCGA-77-8009        TCGA-77-8128        TCGA-77-8130 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-77-8131        TCGA-77-8133        TCGA-77-8136        TCGA-77-8138 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8140        TCGA-77-8143        TCGA-77-8144 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-77-8145        TCGA-77-8148        TCGA-77-8150        TCGA-77-8153 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ        TCGA-77-A5G3 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6560        TCGA-85-6561 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-7950 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-85-8048        TCGA-85-8049        TCGA-85-8052        TCGA-85-8070 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-85-8071        TCGA-85-8072        TCGA-85-8276        TCGA-85-8277 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-85-8287        TCGA-85-8288        TCGA-85-8350        TCGA-85-8351 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-85-8352        TCGA-85-8353        TCGA-85-8354        TCGA-85-8355 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-85-8479        TCGA-85-8481        TCGA-85-8580        TCGA-85-8582 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-85-8664        TCGA-85-8666        TCGA-85-A4CL        TCGA-85-A4QR 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-85-A50M        TCGA-85-A513        TCGA-85-A53L        TCGA-90-6837 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-90-A4ED        TCGA-90-A4EE        TCGA-92-7340        TCGA-92-7341 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-92-8063        TCGA-92-8064        TCGA-92-8065        TCGA-94-7033 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-94-7557        TCGA-94-7943        TCGA-96-7544        TCGA-96-7545 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-96-8169        TCGA-96-8170        TCGA-96-A4JK        TCGA-96-A4JL 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-NC-A5HI 
"6P LOSS WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
  "6P LOSS MUTATED"   "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED"   "6P LOSS MUTATED" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" 
       TCGA-43-A475        TCGA-43-A56V        TCGA-46-3768        TCGA-46-6025 
  "6P LOSS MUTATED"   "6P LOSS MUTATED"   "6P LOSS MUTATED"   "6P LOSS MUTATED" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-5898 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-56-7730        TCGA-56-7822        TCGA-56-8503        TCGA-56-8504 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-56-8622        TCGA-56-8624        TCGA-56-8625        TCGA-56-8626 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-56-A4BY        TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-58-8386        TCGA-58-8387        TCGA-58-8388        TCGA-58-8390 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-58-8391        TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-58-A46K        TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-60-2695        TCGA-60-2696        TCGA-60-2697        TCGA-60-2698 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-60-2703        TCGA-60-2704        TCGA-60-2706        TCGA-60-2707 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-60-2708        TCGA-60-2709        TCGA-60-2710        TCGA-60-2711 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-60-2712        TCGA-60-2713        TCGA-60-2714        TCGA-60-2715 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-60-2716        TCGA-60-2719        TCGA-60-2720        TCGA-60-2721 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-60-2722        TCGA-60-2723        TCGA-60-2724        TCGA-60-2725 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-60-2726        TCGA-66-2727        TCGA-66-2734        TCGA-66-2737 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2753        TCGA-66-2754 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-66-2755        TCGA-66-2756        TCGA-66-2757        TCGA-66-2758 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-66-2759        TCGA-66-2763        TCGA-66-2765        TCGA-66-2766 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-66-2767        TCGA-66-2768        TCGA-66-2769        TCGA-66-2770 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-66-2771        TCGA-66-2773        TCGA-66-2777        TCGA-66-2778 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-66-2780        TCGA-66-2781        TCGA-66-2782        TCGA-66-2783 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-66-2785        TCGA-66-2786        TCGA-66-2787        TCGA-66-2788 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-66-2789        TCGA-66-2790        TCGA-66-2791        TCGA-66-2792 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-66-2793        TCGA-66-2794        TCGA-66-2795        TCGA-66-2800 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-68-7755        TCGA-68-7756        TCGA-68-7757        TCGA-68-8250 
  "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-68-8251        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8007 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-77-8008        TCGA-77-8009        TCGA-77-8128        TCGA-77-8130 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-77-8131        TCGA-77-8133        TCGA-77-8136        TCGA-77-8138 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8140        TCGA-77-8143        TCGA-77-8144 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-77-8145        TCGA-77-8148        TCGA-77-8150        TCGA-77-8153 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ        TCGA-77-A5G3 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6560        TCGA-85-6561 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-7950 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-85-8048        TCGA-85-8049        TCGA-85-8052        TCGA-85-8070 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-85-8071        TCGA-85-8072        TCGA-85-8276        TCGA-85-8277 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-85-8287        TCGA-85-8288        TCGA-85-8350        TCGA-85-8351 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-85-8352        TCGA-85-8353        TCGA-85-8354        TCGA-85-8355 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-85-8479        TCGA-85-8481        TCGA-85-8580        TCGA-85-8582 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-85-8664        TCGA-85-8666        TCGA-85-A4CL        TCGA-85-A4QR 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-85-A50M        TCGA-85-A513        TCGA-85-A53L        TCGA-90-6837 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-90-A4ED        TCGA-90-A4EE        TCGA-92-7340        TCGA-92-7341 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-92-8063        TCGA-92-8064        TCGA-92-8065        TCGA-94-7033 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-94-7557        TCGA-94-7943        TCGA-96-7544        TCGA-96-7545 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-96-8169        TCGA-96-8170        TCGA-96-A4JK        TCGA-96-A4JL 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-NC-A5HI 
"6P LOSS WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
  "6P LOSS MUTATED"   "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED"   "6P LOSS MUTATED" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" 
       TCGA-43-A475        TCGA-43-A56V        TCGA-46-3768        TCGA-46-6025 
  "6P LOSS MUTATED"   "6P LOSS MUTATED"   "6P LOSS MUTATED"   "6P LOSS MUTATED" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-5898 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-56-7730        TCGA-56-7822        TCGA-56-8503        TCGA-56-8504 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-56-8622        TCGA-56-8624        TCGA-56-8625        TCGA-56-8626 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-56-A4BY        TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-58-8386        TCGA-58-8387        TCGA-58-8388        TCGA-58-8390 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-58-8391        TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-58-A46K        TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-60-2695        TCGA-60-2696        TCGA-60-2697        TCGA-60-2698 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-60-2703        TCGA-60-2704        TCGA-60-2706        TCGA-60-2707 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-60-2708        TCGA-60-2709        TCGA-60-2710        TCGA-60-2711 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-60-2712        TCGA-60-2713        TCGA-60-2714        TCGA-60-2715 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-60-2716        TCGA-60-2719        TCGA-60-2720        TCGA-60-2721 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-60-2722        TCGA-60-2723        TCGA-60-2724        TCGA-60-2725 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-60-2726        TCGA-66-2727        TCGA-66-2734        TCGA-66-2737 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2753        TCGA-66-2754 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-66-2755        TCGA-66-2756        TCGA-66-2757        TCGA-66-2758 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-66-2759        TCGA-66-2763        TCGA-66-2765        TCGA-66-2766 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-66-2767        TCGA-66-2768        TCGA-66-2769        TCGA-66-2770 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-66-2771        TCGA-66-2773        TCGA-66-2777        TCGA-66-2778 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-66-2780        TCGA-66-2781        TCGA-66-2782        TCGA-66-2783 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-66-2785        TCGA-66-2786        TCGA-66-2787        TCGA-66-2788 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-66-2789        TCGA-66-2790        TCGA-66-2791        TCGA-66-2792 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-66-2793        TCGA-66-2794        TCGA-66-2795        TCGA-66-2800 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-68-7755        TCGA-68-7756        TCGA-68-7757        TCGA-68-8250 
  "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-68-8251        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8007 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-77-8008        TCGA-77-8009        TCGA-77-8128        TCGA-77-8130 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-77-8131        TCGA-77-8133        TCGA-77-8136        TCGA-77-8138 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8140        TCGA-77-8143        TCGA-77-8144 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-77-8145        TCGA-77-8148        TCGA-77-8150        TCGA-77-8153 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ        TCGA-77-A5G3 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6560        TCGA-85-6561 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-7950 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-85-8048        TCGA-85-8049        TCGA-85-8052        TCGA-85-8070 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-85-8071        TCGA-85-8072        TCGA-85-8276        TCGA-85-8277 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-85-8287        TCGA-85-8288        TCGA-85-8350        TCGA-85-8351 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-85-8352        TCGA-85-8353        TCGA-85-8354        TCGA-85-8355 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-85-8479        TCGA-85-8481        TCGA-85-8580        TCGA-85-8582 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-85-8664        TCGA-85-8666        TCGA-85-A4CL        TCGA-85-A4QR 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-85-A50M        TCGA-85-A513        TCGA-85-A53L        TCGA-90-6837 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-90-A4ED        TCGA-90-A4EE        TCGA-92-7340        TCGA-92-7341 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-92-8063        TCGA-92-8064        TCGA-92-8065        TCGA-94-7033 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-94-7557        TCGA-94-7943        TCGA-96-7544        TCGA-96-7545 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-96-8169        TCGA-96-8170        TCGA-96-A4JK        TCGA-96-A4JL 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-NC-A5HI 
"6P LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D51V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  6P LOSS MUTATED         0       10       31        0        14        22
  6P LOSS WILD-TYPE       1       58      102        1        36        49
                   vv
clus                STAGE IIIA STAGE IIIB STAGE IV
  6P LOSS MUTATED           11          2        1
  6P LOSS WILD-TYPE         43         18        4
D51V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  6P LOSS MUTATED    19  55  15   2
  6P LOSS WILD-TYPE  74 195  29  17
D51V4, multiclass
    clus
vv   6P LOSS MUTATED 6P LOSS WILD-TYPE
  T1              19                74
  T2              55               195
  T3              15                29
  T4               2                17
                   vv
clus                 N0  N1  N2  N3
  6P LOSS MUTATED    51  31   6   1
  6P LOSS WILD-TYPE 202  78  28   4
D51V5, multiclass
    clus
vv   6P LOSS MUTATED 6P LOSS WILD-TYPE
  N0              51               202
  N1              31                78
  N2               6                28
  N3               1                 4
                   vv
clus                 M0  M1  MX
  6P LOSS MUTATED    80   1   9
  6P LOSS WILD-TYPE 268   4  38
D51V6, multiclass
    clus
vv   6P LOSS MUTATED 6P LOSS WILD-TYPE
  M0              80               268
  M1               1                 4
  MX               9                38
D51V7, binary
                   cls
clus                  0   1
  6P LOSS MUTATED    20  71
  6P LOSS WILD-TYPE  81 234
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6P LOSS MUTATED     20   71
  6P LOSS WILD-TYPE   81  234
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  FEMALE              20                81
  MALE                71               234
D51V8, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  6P LOSS MUTATED                                       2
  6P LOSS WILD-TYPE                                    10
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  6P LOSS MUTATED                                        1
  6P LOSS WILD-TYPE                                      5
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  6P LOSS MUTATED                                         0
  6P LOSS WILD-TYPE                                       1
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  6P LOSS MUTATED                                                            88
  6P LOSS WILD-TYPE                                                         299
D51V9, multiclass
                                                             clus
vv                                                            6P LOSS MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     2
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                    1
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              88
                                                             clus
vv                                                            6P LOSS WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      10
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                      5
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               299
D51V10, binary
                   cls
clus                  0   1
  6P LOSS MUTATED     2  89
  6P LOSS WILD-TYPE  10 305
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6P LOSS MUTATED      2   89
  6P LOSS WILD-TYPE   10  305
     clus
vv    6P LOSS MUTATED 6P LOSS WILD-TYPE
  NO                2                10
  YES              89               305
D51V11, continuous
D51V12, continuous
                   vv
clus                 R0  R1  R2  RX
  6P LOSS MUTATED    77   2   0   7
  6P LOSS WILD-TYPE 253   6   4  11
D51V13, multiclass
    clus
vv   6P LOSS MUTATED 6P LOSS WILD-TYPE
  R0              77               253
  R1               2                 6
  R2               0                 4
  RX               7                11

Clustering(52) Variable = 6Q LOSS MUTATION ANALYSIS
D52V1, survival
                   sevent
clus2                 0   1
  6Q LOSS MUTATED    54  31
  6Q LOSS WILD-TYPE 185 107
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
               85               292 
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
               31               107 
$`6Q LOSS MUTATED`
TCGA-18-3408 TCGA-18-3411 TCGA-18-3412 TCGA-18-3415 TCGA-18-3416 TCGA-18-4083 
       81.07        46.52        11.34        59.51        28.34         6.15 
TCGA-18-5592 TCGA-21-1076 TCGA-21-5783 TCGA-21-5787 TCGA-22-0940 TCGA-22-4595 
        3.02        60.89        88.08        10.82        19.99        24.13 
TCGA-22-4596 TCGA-22-4599 TCGA-22-4601 TCGA-22-4607 TCGA-22-5478 TCGA-22-5479 
        0.56        38.17        34.75        19.30         0.79        54.28 
TCGA-22-5483 TCGA-22-5492 TCGA-33-4582 TCGA-33-4583 TCGA-34-2596 TCGA-34-2604 
       18.84        16.60       103.53       141.34         2.63        31.50 
TCGA-34-5928 TCGA-37-5819 TCGA-39-5016 TCGA-39-5021 TCGA-39-5027 TCGA-39-5034 
       18.12         3.39        74.07        68.58        60.76        36.39 
TCGA-39-5037 TCGA-39-5039 TCGA-43-2581 TCGA-43-6143 TCGA-43-8115 TCGA-43-8118 
       35.70        17.88        38.66        12.36         6.64         2.93 
TCGA-46-6025 TCGA-51-4081 TCGA-52-7622 TCGA-52-7812 TCGA-56-7582 TCGA-56-7730 
       10.65        29.95        17.79        27.45         0.85         0.20 
TCGA-56-8624 TCGA-56-8625 TCGA-56-A4BY TCGA-56-A4ZK TCGA-58-8386 TCGA-58-A46M 
        1.18         2.07         0.99         0.13         0.03        23.24 
TCGA-60-2707 TCGA-60-2722 TCGA-60-2726 TCGA-66-2758 TCGA-66-2763 TCGA-66-2773 
       21.70        29.85        11.77        20.98         0.99         3.02 
TCGA-66-2780 TCGA-66-2782 TCGA-66-2783 TCGA-66-2792 TCGA-66-2795 TCGA-68-7755 
       12.03        12.00        24.95        30.02         4.01         2.73 
TCGA-68-7756 TCGA-77-7141 TCGA-77-8007 TCGA-77-8009 TCGA-77-8131 TCGA-77-8140 
        6.64         0.49         6.51        53.95        12.59        11.54 
TCGA-77-8150 TCGA-85-6560 TCGA-85-7696 TCGA-85-7698 TCGA-85-8052 TCGA-85-8070 
       54.41         0.36         0.59         1.61         0.53        16.77 
TCGA-85-8072 TCGA-85-8277 TCGA-85-8354 TCGA-85-8479 TCGA-85-A4QR TCGA-85-A50M 
        1.18         0.36         2.01         0.72         0.82         0.62 
TCGA-90-7767 TCGA-92-7341 TCGA-92-8065 TCGA-96-7544 TCGA-96-A4JK TCGA-J1-A4AH 
        2.93         3.48         2.27        39.88         8.98         7.30 
TCGA-NC-A5HG 
       50.86 

$`6Q LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3409 TCGA-18-3410 TCGA-18-3414 TCGA-18-3417 
       12.16         4.47        79.46         4.80        13.02        24.92 
TCGA-18-3419 TCGA-18-3421 TCGA-18-4086 TCGA-18-4721 TCGA-18-5595 TCGA-21-1070 
        1.61        43.76         2.79        90.51        27.16       119.54 
TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 TCGA-21-1077 TCGA-21-1078 TCGA-21-1079 
       46.88        99.16        70.13        34.78        15.55        31.69 
TCGA-21-1080 TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 TCGA-21-5784 
      122.43         9.30       119.80         8.78        31.63        41.69 
TCGA-21-5786 TCGA-21-A5DI TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 
       33.93        32.19         7.33        14.93         4.31        64.21 
TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 TCGA-22-4593 
        1.74        14.10        27.02        48.82        20.45        35.08 
TCGA-22-4594 TCGA-22-4604 TCGA-22-4605 TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 
       48.33        13.12        32.02         9.53        11.77        31.73 
TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5480 TCGA-22-5481 
       64.90        63.52        14.60        44.22        71.34        79.20 
TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-A5C4 TCGA-33-4532 
       11.74        30.08        62.86        56.32         0.95         7.63 
TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4586 TCGA-33-4587 
      114.05        97.94        43.10       173.79        14.07        54.44 
TCGA-33-4589 TCGA-33-6737 TCGA-33-6738 TCGA-34-2600 TCGA-34-2605 TCGA-34-2608 
       10.98        19.76        26.99        61.61        28.96        32.84 
TCGA-34-2609 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 
       31.23        50.24        67.79        56.38         9.04        23.24 
TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 
       12.00        14.07        30.94         4.96         1.08         3.95 
TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 
        0.43         0.39         6.54         8.09         7.46         7.82 
TCGA-37-4135 TCGA-37-4141 TCGA-39-5011 TCGA-39-5019 TCGA-39-5022 TCGA-39-5024 
        6.81         0.39        47.80        44.71        55.17        70.03 
TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 
        1.71        24.33         1.94        27.35        15.58        35.64 
TCGA-39-5040 TCGA-43-2576 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 
       17.06        40.21        22.49        27.02        33.07        11.47 
TCGA-43-5670 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 
       18.05        24.89        10.19         5.42         3.78         6.97 
TCGA-43-7657 TCGA-43-7658 TCGA-43-8116 TCGA-43-A474 TCGA-43-A475 TCGA-43-A56V 
        1.58        66.51         6.35        11.61         9.73         5.06 
TCGA-46-3768 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-52-7809 TCGA-52-7810 
        9.96        13.87         0.39         0.39         5.42        30.31 
TCGA-52-7811 TCGA-56-1622 TCGA-56-5897 TCGA-56-5898 TCGA-56-6545 TCGA-56-6546 
        8.75        28.93         0.10        18.25         2.04         1.02 
TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 TCGA-56-7580 TCGA-56-7822 
        0.99         0.43         0.99         1.45         1.32         0.03 
TCGA-56-8503 TCGA-56-8504 TCGA-56-8622 TCGA-56-8626 TCGA-56-8628 TCGA-56-8629 
        1.35         5.82         1.78         0.56         0.53         1.12 
TCGA-56-A49D TCGA-56-A4BX TCGA-56-A4ZJ TCGA-56-A5DS TCGA-58-8387 TCGA-58-8388 
        0.99         1.51         1.02         0.26        13.25        12.43 
TCGA-58-8390 TCGA-58-8391 TCGA-58-8392 TCGA-58-8393 TCGA-58-A46J TCGA-58-A46K 
       29.95        71.24        16.47        34.78        64.87        34.36 
TCGA-58-A46L TCGA-58-A46N TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 
       36.59        17.72        21.07         3.58        12.23        10.22 
TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 
       96.82        37.94        92.71        80.42        49.48        66.51 
TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 
       41.39         9.01        56.91        50.33        35.34        48.49 
TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 
       42.61         3.16        32.28        35.90        23.57        26.79 
TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 
       16.96        43.10         2.01        21.07         0.99         1.02 
TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2759 TCGA-66-2765 
        2.01         0.92         0.99         0.99        25.02         2.01 
TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 TCGA-66-2770 TCGA-66-2771 
        1.02         2.01         2.01         7.07        23.01        19.00 
TCGA-66-2777 TCGA-66-2778 TCGA-66-2781 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 
        2.01        19.00         3.98         1.94        25.97        40.01 
TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 TCGA-66-2793 TCGA-66-2794 
       22.98         4.04        22.98         5.03        10.06        54.08 
TCGA-66-2800 TCGA-68-7757 TCGA-68-8250 TCGA-68-8251 TCGA-77-6842 TCGA-77-6843 
       49.05         6.94         8.02         3.12        29.56        73.08 
TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 TCGA-77-7140 TCGA-77-7142 
       75.09        23.28        11.18        89.95        20.78        42.25 
TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 TCGA-77-8008 
       70.09       106.95         0.16        46.78        15.75        86.76 
TCGA-77-8128 TCGA-77-8130 TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 
       37.81        82.92        53.92        39.09        17.69       104.09 
TCGA-77-8143 TCGA-77-8144 TCGA-77-8145 TCGA-77-8148 TCGA-77-8153 TCGA-77-8154 
       26.40        27.39         6.97         9.63        55.33        35.90 
TCGA-77-8156 TCGA-77-A5FZ TCGA-77-A5G3 TCGA-77-A5GB TCGA-77-A5GH TCGA-85-6561 
        0.33       126.18       117.57        30.81        23.44         0.79 
TCGA-85-6798 TCGA-85-7697 TCGA-85-7699 TCGA-85-7843 TCGA-85-7844 TCGA-85-7950 
        1.12         0.33         0.03         1.15         1.25         1.97 
TCGA-85-8048 TCGA-85-8049 TCGA-85-8071 TCGA-85-8276 TCGA-85-8287 TCGA-85-8288 
        0.85         1.97        14.07         0.43         1.45         1.78 
TCGA-85-8350 TCGA-85-8351 TCGA-85-8352 TCGA-85-8353 TCGA-85-8355 TCGA-85-8481 
        1.97         1.81         2.20         1.78         0.66         0.66 
TCGA-85-8580 TCGA-85-8582 TCGA-85-8664 TCGA-85-8666 TCGA-85-A4CL TCGA-85-A513 
       14.60        13.91         0.10        15.58         0.46         0.79 
TCGA-85-A53L TCGA-90-6837 TCGA-90-7766 TCGA-90-7769 TCGA-90-7964 TCGA-90-A4ED 
        0.43        24.89         9.50        11.77        14.07         8.02 
TCGA-90-A4EE TCGA-92-7340 TCGA-92-8063 TCGA-92-8064 TCGA-94-7033 TCGA-94-7557 
       10.88         2.70         4.01         5.26         2.86         0.16 
TCGA-94-7943 TCGA-96-7545 TCGA-96-8169 TCGA-96-8170 TCGA-96-A4JL TCGA-98-7454 
       11.70        44.15         6.18         6.90         6.02         8.42 
TCGA-98-8020 TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 TCGA-L3-A4E7 TCGA-L3-A524 
        2.73        13.58         7.33        10.13         1.15        14.76 
TCGA-LA-A446 TCGA-MF-A522 TCGA-NC-A5HE TCGA-NC-A5HI 
        1.18         3.02        56.61        37.32 

  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
             0.03              0.03 
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
           141.34            173.79 
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
            12.00             14.07 
[1] "0.0 - 141.3 (12.0)" "0.0 - 173.8 (14.1)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56V        TCGA-46-3768        TCGA-46-6025 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-5898 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-56-7730        TCGA-56-7822        TCGA-56-8503        TCGA-56-8504 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-56-8622        TCGA-56-8624        TCGA-56-8625        TCGA-56-8626 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-56-A4BY        TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-58-8386        TCGA-58-8387        TCGA-58-8388        TCGA-58-8390 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-58-8391        TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-58-A46K        TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-60-2695        TCGA-60-2696        TCGA-60-2697        TCGA-60-2698 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-60-2703        TCGA-60-2704        TCGA-60-2706        TCGA-60-2707 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-60-2708        TCGA-60-2709        TCGA-60-2710        TCGA-60-2711 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-60-2712        TCGA-60-2713        TCGA-60-2714        TCGA-60-2715 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-60-2716        TCGA-60-2719        TCGA-60-2720        TCGA-60-2721 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-60-2722        TCGA-60-2723        TCGA-60-2724        TCGA-60-2725 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-60-2726        TCGA-66-2727        TCGA-66-2734        TCGA-66-2737 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2753        TCGA-66-2754 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-66-2755        TCGA-66-2756        TCGA-66-2757        TCGA-66-2758 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-66-2759        TCGA-66-2763        TCGA-66-2765        TCGA-66-2766 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-66-2767        TCGA-66-2768        TCGA-66-2769        TCGA-66-2770 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-66-2771        TCGA-66-2773        TCGA-66-2777        TCGA-66-2778 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-66-2780        TCGA-66-2781        TCGA-66-2782        TCGA-66-2783 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-66-2785        TCGA-66-2786        TCGA-66-2787        TCGA-66-2788 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-66-2789        TCGA-66-2790        TCGA-66-2791        TCGA-66-2792 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-66-2793        TCGA-66-2794        TCGA-66-2795        TCGA-66-2800 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-68-7755        TCGA-68-7756        TCGA-68-7757        TCGA-68-8250 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-68-8251        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8007 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-77-8008        TCGA-77-8009        TCGA-77-8128        TCGA-77-8130 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-77-8131        TCGA-77-8133        TCGA-77-8136        TCGA-77-8138 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8140        TCGA-77-8143        TCGA-77-8144 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-77-8145        TCGA-77-8148        TCGA-77-8150        TCGA-77-8153 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ        TCGA-77-A5G3 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6560        TCGA-85-6561 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-7950 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-85-8048        TCGA-85-8049        TCGA-85-8052        TCGA-85-8070 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-85-8071        TCGA-85-8072        TCGA-85-8276        TCGA-85-8277 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-85-8287        TCGA-85-8288        TCGA-85-8350        TCGA-85-8351 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-85-8352        TCGA-85-8353        TCGA-85-8354        TCGA-85-8355 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-85-8479        TCGA-85-8481        TCGA-85-8580        TCGA-85-8582 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-85-8664        TCGA-85-8666        TCGA-85-A4CL        TCGA-85-A4QR 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-85-A50M        TCGA-85-A513        TCGA-85-A53L        TCGA-90-6837 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-90-A4ED        TCGA-90-A4EE        TCGA-92-7340        TCGA-92-7341 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-92-8063        TCGA-92-8064        TCGA-92-8065        TCGA-94-7033 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-94-7557        TCGA-94-7943        TCGA-96-7544        TCGA-96-7545 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-96-8169        TCGA-96-8170        TCGA-96-A4JK        TCGA-96-A4JL 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-NC-A5HI 
"6Q LOSS WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56V        TCGA-46-3768        TCGA-46-6025 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-5898 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-56-7730        TCGA-56-7822        TCGA-56-8503        TCGA-56-8504 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-56-8622        TCGA-56-8624        TCGA-56-8625        TCGA-56-8626 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-56-A4BY        TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-58-8386        TCGA-58-8387        TCGA-58-8388        TCGA-58-8390 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-58-8391        TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-58-A46K        TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-60-2695        TCGA-60-2696        TCGA-60-2697        TCGA-60-2698 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-60-2703        TCGA-60-2704        TCGA-60-2706        TCGA-60-2707 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-60-2708        TCGA-60-2709        TCGA-60-2710        TCGA-60-2711 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-60-2712        TCGA-60-2713        TCGA-60-2714        TCGA-60-2715 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-60-2716        TCGA-60-2719        TCGA-60-2720        TCGA-60-2721 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-60-2722        TCGA-60-2723        TCGA-60-2724        TCGA-60-2725 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-60-2726        TCGA-66-2727        TCGA-66-2734        TCGA-66-2737 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-66-2789        TCGA-66-2790        TCGA-66-2791        TCGA-66-2792 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
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  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
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  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
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  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
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"6Q LOSS WILD-TYPE" 
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  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
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  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
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  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-77-8008        TCGA-77-8009        TCGA-77-8128        TCGA-77-8130 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-77-8131        TCGA-77-8133        TCGA-77-8136        TCGA-77-8138 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-77-8145        TCGA-77-8148        TCGA-77-8150        TCGA-77-8153 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ        TCGA-77-A5G3 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6560        TCGA-85-6561 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-7950 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-85-8048        TCGA-85-8049        TCGA-85-8052        TCGA-85-8070 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-85-8071        TCGA-85-8072        TCGA-85-8276        TCGA-85-8277 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-85-8287        TCGA-85-8288        TCGA-85-8350        TCGA-85-8351 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-85-8352        TCGA-85-8353        TCGA-85-8354        TCGA-85-8355 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-85-8479        TCGA-85-8481        TCGA-85-8580        TCGA-85-8582 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-85-8664        TCGA-85-8666        TCGA-85-A4CL        TCGA-85-A4QR 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-85-A50M        TCGA-85-A513        TCGA-85-A53L        TCGA-90-6837 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-90-A4ED        TCGA-90-A4EE        TCGA-92-7340        TCGA-92-7341 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-92-8063        TCGA-92-8064        TCGA-92-8065        TCGA-94-7033 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-94-7557        TCGA-94-7943        TCGA-96-7544        TCGA-96-7545 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-96-8169        TCGA-96-8170        TCGA-96-A4JK        TCGA-96-A4JL 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-NC-A5HI 
"6Q LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D52V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  6Q LOSS MUTATED         0        9       32        0        16        20
  6Q LOSS WILD-TYPE       1       59      101        1        34        51
                   vv
clus                STAGE IIIA STAGE IIIB STAGE IV
  6Q LOSS MUTATED           14          2        1
  6Q LOSS WILD-TYPE         40         18        4
D52V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  6Q LOSS MUTATED    16  62  13   3
  6Q LOSS WILD-TYPE  77 188  31  16
D52V4, multiclass
    clus
vv   6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  T1              16                77
  T2              62               188
  T3              13                31
  T4               3                16
                   vv
clus                 N0  N1  N2  N3
  6Q LOSS MUTATED    54  30   7   1
  6Q LOSS WILD-TYPE 199  79  27   4
D52V5, multiclass
    clus
vv   6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  N0              54               199
  N1              30                79
  N2               7                27
  N3               1                 4
                   vv
clus                 M0  M1  MX
  6Q LOSS MUTATED    82   1  10
  6Q LOSS WILD-TYPE 266   4  37
D52V6, multiclass
    clus
vv   6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  M0              82               266
  M1               1                 4
  MX              10                37
D52V7, binary
                   cls
clus                  0   1
  6Q LOSS MUTATED    23  71
  6Q LOSS WILD-TYPE  78 234
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6Q LOSS MUTATED     23   71
  6Q LOSS WILD-TYPE   78  234
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  FEMALE              23                78
  MALE                71               234
D52V8, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  6Q LOSS MUTATED                                       3
  6Q LOSS WILD-TYPE                                     9
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  6Q LOSS MUTATED                                        2
  6Q LOSS WILD-TYPE                                      4
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  6Q LOSS MUTATED                                         0
  6Q LOSS WILD-TYPE                                       1
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  6Q LOSS MUTATED                                                            89
  6Q LOSS WILD-TYPE                                                         298
D52V9, multiclass
                                                             clus
vv                                                            6Q LOSS MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     3
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                    2
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              89
                                                             clus
vv                                                            6Q LOSS WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       9
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                      4
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               298
D52V10, binary
                   cls
clus                  0   1
  6Q LOSS MUTATED     3  91
  6Q LOSS WILD-TYPE   9 303
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6Q LOSS MUTATED      3   91
  6Q LOSS WILD-TYPE    9  303
     clus
vv    6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  NO                3                 9
  YES              91               303
D52V11, continuous
D52V12, continuous
                   vv
clus                 R0  R1  R2  RX
  6Q LOSS MUTATED    79   1   1   6
  6Q LOSS WILD-TYPE 251   7   3  12
D52V13, multiclass
    clus
vv   6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  R0              79               251
  R1               1                 7
  R2               1                 3
  RX               6                12

Clustering(53) Variable = 7P LOSS MUTATION ANALYSIS
D53V1, survival
                   sevent
clus2                 0   1
  7P LOSS MUTATED    28  19
  7P LOSS WILD-TYPE 211 119
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
               47               330 
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
               19               119 
$`7P LOSS MUTATED`
TCGA-18-3419 TCGA-21-1077 TCGA-21-1083 TCGA-21-5786 TCGA-21-5787 TCGA-21-A5DI 
        1.61        34.78         8.78        33.93        10.82        32.19 
TCGA-22-1016 TCGA-22-1017 TCGA-22-4601 TCGA-22-5492 TCGA-33-6738 TCGA-37-3789 
       27.02        48.82        34.75        16.60        26.99         0.43 
TCGA-37-4133 TCGA-37-5819 TCGA-39-5029 TCGA-39-5036 TCGA-43-2578 TCGA-43-6770 
        7.82         3.39        24.33        35.64        22.49        10.19 
TCGA-46-6026 TCGA-56-1622 TCGA-56-5898 TCGA-56-6546 TCGA-56-7580 TCGA-56-8629 
       13.87        28.93        18.25         1.02         1.32         1.12 
TCGA-58-8386 TCGA-58-8390 TCGA-60-2695 TCGA-60-2703 TCGA-60-2712 TCGA-66-2757 
        0.03        29.95        21.07        96.82         9.01         0.99 
TCGA-66-2773 TCGA-66-2783 TCGA-66-2788 TCGA-66-2792 TCGA-66-2793 TCGA-77-7142 
        3.02        24.95        22.98        30.02        10.06        42.25 
TCGA-77-7337 TCGA-77-8143 TCGA-77-8144 TCGA-77-A5GH TCGA-85-6560 TCGA-85-7699 
      106.95        26.40        27.39        23.44         0.36         0.03 
TCGA-85-8070 TCGA-85-8277 TCGA-85-8353 TCGA-90-7767 TCGA-J1-A4AH 
       16.77         0.36         1.78         2.93         7.30 

$`7P LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3421 
       11.34        13.02        59.51        28.34        24.92        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       119.54 
TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1078 TCGA-21-1079 
       46.88        99.16        70.13        60.89        15.55        31.69 
TCGA-21-1080 TCGA-21-1081 TCGA-21-1082 TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 
      122.43         9.30       119.80        31.63        88.08        41.69 
TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 
       19.99         7.33        14.93         4.31        64.21         1.74 
TCGA-22-1012 TCGA-22-4591 TCGA-22-4593 TCGA-22-4594 TCGA-22-4595 TCGA-22-4596 
       14.10        20.45        35.08        48.33        24.13         0.56 
TCGA-22-4599 TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 
       38.17        13.12        32.02        19.30         9.53        11.77 
TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 
       31.73        64.90        63.52        14.60        44.22         0.79 
TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 
       54.28        71.34        79.20        11.74        18.84        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-A5C4 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       62.86        56.32         0.95         7.63       114.05        97.94 
TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-4587 
       43.10       173.79       103.53       141.34        14.07        54.44 
TCGA-33-4589 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 
       10.98        19.76         2.63        61.61        31.50        28.96 
TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 
       32.84        31.23        50.24        67.79        56.38         9.04 
TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 
       23.24        12.00        14.07        30.94        18.12         4.96 
TCGA-34-7107 TCGA-37-3783 TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 
        1.08         3.95         0.39         6.54         8.09         7.46 
TCGA-37-4135 TCGA-37-4141 TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 
        6.81         0.39        47.80        74.07        44.71        68.58 
TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5030 TCGA-39-5031 
       55.17        70.03        60.76         1.71         1.94        27.35 
TCGA-39-5034 TCGA-39-5035 TCGA-39-5037 TCGA-39-5039 TCGA-39-5040 TCGA-43-2576 
       36.39        15.58        35.70        17.88        17.06        40.21 
TCGA-43-2581 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-5670 TCGA-43-6143 
       38.66        27.02        33.07        11.47        18.05        12.36 
TCGA-43-6647 TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 
       24.89         5.42         3.78         6.97         1.58        66.51 
TCGA-43-8115 TCGA-43-8116 TCGA-43-8118 TCGA-43-A474 TCGA-43-A475 TCGA-43-A56V 
        6.64         6.35         2.93        11.61         9.73         5.06 
TCGA-46-3768 TCGA-46-6025 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 
        9.96        10.65         0.39         0.39        29.95        17.79 
TCGA-52-7809 TCGA-52-7810 TCGA-52-7811 TCGA-52-7812 TCGA-56-5897 TCGA-56-6545 
        5.42        30.31         8.75        27.45         0.10         2.04 
TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 TCGA-56-7582 TCGA-56-7730 
        0.99         0.43         0.99         1.45         0.85         0.20 
TCGA-56-7822 TCGA-56-8503 TCGA-56-8504 TCGA-56-8622 TCGA-56-8624 TCGA-56-8625 
        0.03         1.35         5.82         1.78         1.18         2.07 
TCGA-56-8626 TCGA-56-8628 TCGA-56-A49D TCGA-56-A4BX TCGA-56-A4BY TCGA-56-A4ZJ 
        0.56         0.53         0.99         1.51         0.99         1.02 
TCGA-56-A4ZK TCGA-56-A5DS TCGA-58-8387 TCGA-58-8388 TCGA-58-8391 TCGA-58-8392 
        0.13         0.26        13.25        12.43        71.24        16.47 
TCGA-58-8393 TCGA-58-A46J TCGA-58-A46K TCGA-58-A46L TCGA-58-A46M TCGA-58-A46N 
       34.78        64.87        34.36        36.59        23.24        17.72 
TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 
        3.58        12.23        10.22        37.94        92.71        21.70 
TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2713 TCGA-60-2714 
       80.42        49.48        66.51        41.39        56.91        50.33 
TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 
       35.34        48.49        42.61         3.16        32.28        29.85 
TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 
       35.90        23.57        26.79        11.77        16.96        43.10 
TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 
        2.01        21.07         0.99         1.02         2.01         0.92 
TCGA-66-2756 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 
        0.99        20.98        25.02         0.99         2.01         1.02 
TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 TCGA-66-2770 TCGA-66-2771 TCGA-66-2777 
        2.01         2.01         7.07        23.01        19.00         2.01 
TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2785 TCGA-66-2786 
       19.00        12.03         3.98        12.00         1.94        25.97 
TCGA-66-2787 TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 TCGA-66-2794 TCGA-66-2795 
       40.01         4.04        22.98         5.03        54.08         4.01 
TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 TCGA-68-7757 TCGA-68-8250 TCGA-68-8251 
       49.05         2.73         6.64         6.94         8.02         3.12 
TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 
       29.56        73.08        75.09        23.28        11.18        89.95 
TCGA-77-7140 TCGA-77-7141 TCGA-77-7335 TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 
       20.78         0.49        70.09         0.16        46.78        15.75 
TCGA-77-8007 TCGA-77-8008 TCGA-77-8009 TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 
        6.51        86.76        53.95        37.81        82.92        12.59 
TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 TCGA-77-8145 
       53.92        39.09        17.69       104.09        11.54         6.97 
TCGA-77-8148 TCGA-77-8150 TCGA-77-8153 TCGA-77-8154 TCGA-77-8156 TCGA-77-A5FZ 
        9.63        54.41        55.33        35.90         0.33       126.18 
TCGA-77-A5G3 TCGA-77-A5GB TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 TCGA-85-7697 
      117.57        30.81         0.79         1.12         0.59         0.33 
TCGA-85-7698 TCGA-85-7843 TCGA-85-7844 TCGA-85-7950 TCGA-85-8048 TCGA-85-8049 
        1.61         1.15         1.25         1.97         0.85         1.97 
TCGA-85-8052 TCGA-85-8071 TCGA-85-8072 TCGA-85-8276 TCGA-85-8287 TCGA-85-8288 
        0.53        14.07         1.18         0.43         1.45         1.78 
TCGA-85-8350 TCGA-85-8351 TCGA-85-8352 TCGA-85-8354 TCGA-85-8355 TCGA-85-8479 
        1.97         1.81         2.20         2.01         0.66         0.72 
TCGA-85-8481 TCGA-85-8580 TCGA-85-8582 TCGA-85-8664 TCGA-85-8666 TCGA-85-A4CL 
        0.66        14.60        13.91         0.10        15.58         0.46 
TCGA-85-A4QR TCGA-85-A50M TCGA-85-A513 TCGA-85-A53L TCGA-90-6837 TCGA-90-7766 
        0.82         0.62         0.79         0.43        24.89         9.50 
TCGA-90-7769 TCGA-90-7964 TCGA-90-A4ED TCGA-90-A4EE TCGA-92-7340 TCGA-92-7341 
       11.77        14.07         8.02        10.88         2.70         3.48 
TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 TCGA-94-7943 
        4.01         5.26         2.27         2.86         0.16        11.70 
TCGA-96-7544 TCGA-96-7545 TCGA-96-8169 TCGA-96-8170 TCGA-96-A4JK TCGA-96-A4JL 
       39.88        44.15         6.18         6.90         8.98         6.02 
TCGA-98-7454 TCGA-98-8020 TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 TCGA-L3-A4E7 
        8.42         2.73        13.58         7.33        10.13         1.15 
TCGA-L3-A524 TCGA-LA-A446 TCGA-MF-A522 TCGA-NC-A5HE TCGA-NC-A5HG TCGA-NC-A5HI 
       14.76         1.18         3.02        56.61        50.86        37.32 

  7P LOSS MUTATED 7P LOSS WILD-TYPE 
             0.03              0.03 
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
           106.95            173.79 
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
            16.77             13.07 
[1] "0.0 - 107.0 (16.8)" "0.0 - 173.8 (13.1)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED"   "7P LOSS MUTATED"   "7P LOSS MUTATED" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56V        TCGA-46-3768        TCGA-46-6025 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-5898 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-56-7730        TCGA-56-7822        TCGA-56-8503        TCGA-56-8504 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-56-8622        TCGA-56-8624        TCGA-56-8625        TCGA-56-8626 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-56-A4BY        TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-58-8386        TCGA-58-8387        TCGA-58-8388        TCGA-58-8390 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-58-8391        TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-58-A46K        TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-60-2695        TCGA-60-2696        TCGA-60-2697        TCGA-60-2698 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-60-2703        TCGA-60-2704        TCGA-60-2706        TCGA-60-2707 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-60-2708        TCGA-60-2709        TCGA-60-2710        TCGA-60-2711 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-60-2712        TCGA-60-2713        TCGA-60-2714        TCGA-60-2715 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-60-2716        TCGA-60-2719        TCGA-60-2720        TCGA-60-2721 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-60-2722        TCGA-60-2723        TCGA-60-2724        TCGA-60-2725 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-60-2726        TCGA-66-2727        TCGA-66-2734        TCGA-66-2737 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2753        TCGA-66-2754 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-66-2755        TCGA-66-2756        TCGA-66-2757        TCGA-66-2758 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-66-2759        TCGA-66-2763        TCGA-66-2765        TCGA-66-2766 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-66-2767        TCGA-66-2768        TCGA-66-2769        TCGA-66-2770 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-66-2771        TCGA-66-2773        TCGA-66-2777        TCGA-66-2778 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-66-2780        TCGA-66-2781        TCGA-66-2782        TCGA-66-2783 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-66-2785        TCGA-66-2786        TCGA-66-2787        TCGA-66-2788 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-66-2789        TCGA-66-2790        TCGA-66-2791        TCGA-66-2792 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-66-2793        TCGA-66-2794        TCGA-66-2795        TCGA-66-2800 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-68-7755        TCGA-68-7756        TCGA-68-7757        TCGA-68-8250 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-68-8251        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8007 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-77-8008        TCGA-77-8009        TCGA-77-8128        TCGA-77-8130 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-77-8131        TCGA-77-8133        TCGA-77-8136        TCGA-77-8138 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8140        TCGA-77-8143        TCGA-77-8144 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED"   "7P LOSS MUTATED" 
       TCGA-77-8145        TCGA-77-8148        TCGA-77-8150        TCGA-77-8153 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ        TCGA-77-A5G3 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6560        TCGA-85-6561 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-7950 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-85-8048        TCGA-85-8049        TCGA-85-8052        TCGA-85-8070 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-85-8071        TCGA-85-8072        TCGA-85-8276        TCGA-85-8277 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-85-8287        TCGA-85-8288        TCGA-85-8350        TCGA-85-8351 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-85-8352        TCGA-85-8353        TCGA-85-8354        TCGA-85-8355 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-85-8479        TCGA-85-8481        TCGA-85-8580        TCGA-85-8582 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-85-8664        TCGA-85-8666        TCGA-85-A4CL        TCGA-85-A4QR 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-85-A50M        TCGA-85-A513        TCGA-85-A53L        TCGA-90-6837 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-90-A4ED        TCGA-90-A4EE        TCGA-92-7340        TCGA-92-7341 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-92-8063        TCGA-92-8064        TCGA-92-8065        TCGA-94-7033 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-94-7557        TCGA-94-7943        TCGA-96-7544        TCGA-96-7545 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-96-8169        TCGA-96-8170        TCGA-96-A4JK        TCGA-96-A4JL 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-NC-A5HI 
"7P LOSS WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED"   "7P LOSS MUTATED"   "7P LOSS MUTATED" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56V        TCGA-46-3768        TCGA-46-6025 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-5898 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-56-7730        TCGA-56-7822        TCGA-56-8503        TCGA-56-8504 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-56-8622        TCGA-56-8624        TCGA-56-8625        TCGA-56-8626 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-56-A4BY        TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-58-8386        TCGA-58-8387        TCGA-58-8388        TCGA-58-8390 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-58-8391        TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-58-A46K        TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-60-2695        TCGA-60-2696        TCGA-60-2697        TCGA-60-2698 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-60-2703        TCGA-60-2704        TCGA-60-2706        TCGA-60-2707 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-60-2708        TCGA-60-2709        TCGA-60-2710        TCGA-60-2711 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-60-2712        TCGA-60-2713        TCGA-60-2714        TCGA-60-2715 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-60-2716        TCGA-60-2719        TCGA-60-2720        TCGA-60-2721 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-60-2722        TCGA-60-2723        TCGA-60-2724        TCGA-60-2725 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-60-2726        TCGA-66-2727        TCGA-66-2734        TCGA-66-2737 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2753        TCGA-66-2754 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-66-2755        TCGA-66-2756        TCGA-66-2757        TCGA-66-2758 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-66-2759        TCGA-66-2763        TCGA-66-2765        TCGA-66-2766 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-66-2767        TCGA-66-2768        TCGA-66-2769        TCGA-66-2770 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-66-2771        TCGA-66-2773        TCGA-66-2777        TCGA-66-2778 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-66-2780        TCGA-66-2781        TCGA-66-2782        TCGA-66-2783 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-66-2785        TCGA-66-2786        TCGA-66-2787        TCGA-66-2788 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-66-2789        TCGA-66-2790        TCGA-66-2791        TCGA-66-2792 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-66-2793        TCGA-66-2794        TCGA-66-2795        TCGA-66-2800 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-68-7755        TCGA-68-7756        TCGA-68-7757        TCGA-68-8250 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-68-8251        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8007 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-77-8008        TCGA-77-8009        TCGA-77-8128        TCGA-77-8130 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-77-8131        TCGA-77-8133        TCGA-77-8136        TCGA-77-8138 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8140        TCGA-77-8143        TCGA-77-8144 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED"   "7P LOSS MUTATED" 
       TCGA-77-8145        TCGA-77-8148        TCGA-77-8150        TCGA-77-8153 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ        TCGA-77-A5G3 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6560        TCGA-85-6561 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-7950 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-85-8048        TCGA-85-8049        TCGA-85-8052        TCGA-85-8070 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-85-8071        TCGA-85-8072        TCGA-85-8276        TCGA-85-8277 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-85-8287        TCGA-85-8288        TCGA-85-8350        TCGA-85-8351 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-85-8352        TCGA-85-8353        TCGA-85-8354        TCGA-85-8355 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-85-8479        TCGA-85-8481        TCGA-85-8580        TCGA-85-8582 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-85-8664        TCGA-85-8666        TCGA-85-A4CL        TCGA-85-A4QR 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-85-A50M        TCGA-85-A513        TCGA-85-A53L        TCGA-90-6837 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-90-A4ED        TCGA-90-A4EE        TCGA-92-7340        TCGA-92-7341 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-92-8063        TCGA-92-8064        TCGA-92-8065        TCGA-94-7033 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-94-7557        TCGA-94-7943        TCGA-96-7544        TCGA-96-7545 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-96-8169        TCGA-96-8170        TCGA-96-A4JK        TCGA-96-A4JL 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-NC-A5HI 
"7P LOSS WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED"   "7P LOSS MUTATED"   "7P LOSS MUTATED" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56V        TCGA-46-3768        TCGA-46-6025 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-5898 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-56-7730        TCGA-56-7822        TCGA-56-8503        TCGA-56-8504 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-56-8622        TCGA-56-8624        TCGA-56-8625        TCGA-56-8626 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-56-A4BY        TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-58-8386        TCGA-58-8387        TCGA-58-8388        TCGA-58-8390 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-58-8391        TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-58-A46K        TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-60-2695        TCGA-60-2696        TCGA-60-2697        TCGA-60-2698 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-60-2703        TCGA-60-2704        TCGA-60-2706        TCGA-60-2707 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-60-2708        TCGA-60-2709        TCGA-60-2710        TCGA-60-2711 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-60-2712        TCGA-60-2713        TCGA-60-2714        TCGA-60-2715 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-60-2716        TCGA-60-2719        TCGA-60-2720        TCGA-60-2721 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-60-2722        TCGA-60-2723        TCGA-60-2724        TCGA-60-2725 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-60-2726        TCGA-66-2727        TCGA-66-2734        TCGA-66-2737 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2753        TCGA-66-2754 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-66-2755        TCGA-66-2756        TCGA-66-2757        TCGA-66-2758 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-66-2759        TCGA-66-2763        TCGA-66-2765        TCGA-66-2766 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-66-2767        TCGA-66-2768        TCGA-66-2769        TCGA-66-2770 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-66-2771        TCGA-66-2773        TCGA-66-2777        TCGA-66-2778 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-66-2780        TCGA-66-2781        TCGA-66-2782        TCGA-66-2783 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-66-2785        TCGA-66-2786        TCGA-66-2787        TCGA-66-2788 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-66-2789        TCGA-66-2790        TCGA-66-2791        TCGA-66-2792 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-66-2793        TCGA-66-2794        TCGA-66-2795        TCGA-66-2800 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-68-7755        TCGA-68-7756        TCGA-68-7757        TCGA-68-8250 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-68-8251        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8007 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-77-8008        TCGA-77-8009        TCGA-77-8128        TCGA-77-8130 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-77-8131        TCGA-77-8133        TCGA-77-8136        TCGA-77-8138 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8140        TCGA-77-8143        TCGA-77-8144 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED"   "7P LOSS MUTATED" 
       TCGA-77-8145        TCGA-77-8148        TCGA-77-8150        TCGA-77-8153 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ        TCGA-77-A5G3 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6560        TCGA-85-6561 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-7950 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-85-8048        TCGA-85-8049        TCGA-85-8052        TCGA-85-8070 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-85-8071        TCGA-85-8072        TCGA-85-8276        TCGA-85-8277 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-85-8287        TCGA-85-8288        TCGA-85-8350        TCGA-85-8351 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-85-8352        TCGA-85-8353        TCGA-85-8354        TCGA-85-8355 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-85-8479        TCGA-85-8481        TCGA-85-8580        TCGA-85-8582 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-85-8664        TCGA-85-8666        TCGA-85-A4CL        TCGA-85-A4QR 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-85-A50M        TCGA-85-A513        TCGA-85-A53L        TCGA-90-6837 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-90-A4ED        TCGA-90-A4EE        TCGA-92-7340        TCGA-92-7341 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-92-8063        TCGA-92-8064        TCGA-92-8065        TCGA-94-7033 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-94-7557        TCGA-94-7943        TCGA-96-7544        TCGA-96-7545 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-96-8169        TCGA-96-8170        TCGA-96-A4JK        TCGA-96-A4JL 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-NC-A5HI 
"7P LOSS WILD-TYPE" 
[1] "hr=" "1.4"
D53V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  7P LOSS MUTATED         1        5       14        0         5        10
  7P LOSS WILD-TYPE       0       63      119        1        45        61
                   vv
clus                STAGE IIIA STAGE IIIB STAGE IV
  7P LOSS MUTATED           11          3        1
  7P LOSS WILD-TYPE         43         17        4
D53V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  7P LOSS MUTATED     9  33   4   4
  7P LOSS WILD-TYPE  84 217  40  15
D53V4, multiclass
    clus
vv   7P LOSS MUTATED 7P LOSS WILD-TYPE
  T1               9                84
  T2              33               217
  T3               4                40
  T4               4                15
                   vv
clus                 N0  N1  N2  N3
  7P LOSS MUTATED    28  14   6   1
  7P LOSS WILD-TYPE 225  95  28   4
D53V5, multiclass
    clus
vv   7P LOSS MUTATED 7P LOSS WILD-TYPE
  N0              28               225
  N1              14                95
  N2               6                28
  N3               1                 4
                   vv
clus                 M0  M1  MX
  7P LOSS MUTATED    42   1   6
  7P LOSS WILD-TYPE 306   4  41
D53V6, multiclass
    clus
vv   7P LOSS MUTATED 7P LOSS WILD-TYPE
  M0              42               306
  M1               1                 4
  MX               6                41
D53V7, binary
                   cls
clus                  0   1
  7P LOSS MUTATED     9  41
  7P LOSS WILD-TYPE  92 264
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7P LOSS MUTATED      9   41
  7P LOSS WILD-TYPE   92  264
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  FEMALE               9                92
  MALE                41               264
D53V8, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  7P LOSS MUTATED                                       1
  7P LOSS WILD-TYPE                                    11
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  7P LOSS MUTATED                                        0
  7P LOSS WILD-TYPE                                      6
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  7P LOSS MUTATED                                         0
  7P LOSS WILD-TYPE                                       1
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  7P LOSS MUTATED                                                            49
  7P LOSS WILD-TYPE                                                         338
D53V9, multiclass
                                                             clus
vv                                                            7P LOSS MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     1
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                    0
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              49
                                                             clus
vv                                                            7P LOSS WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      11
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                      6
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               338
D53V10, binary
                   cls
clus                  0   1
  7P LOSS MUTATED     2  48
  7P LOSS WILD-TYPE  10 346
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7P LOSS MUTATED      2   48
  7P LOSS WILD-TYPE   10  346
     clus
vv    7P LOSS MUTATED 7P LOSS WILD-TYPE
  NO                2                10
  YES              48               346
D53V11, continuous
D53V12, continuous
                   vv
clus                 R0  R1  R2  RX
  7P LOSS MUTATED    45   0   2   1
  7P LOSS WILD-TYPE 285   8   2  17
D53V13, multiclass
    clus
vv   7P LOSS MUTATED 7P LOSS WILD-TYPE
  R0              45               285
  R1               0                 8
  R2               2                 2
  RX               1                17

Clustering(54) Variable = 7Q LOSS MUTATION ANALYSIS
D54V1, survival
                   sevent
clus2                 0   1
  7Q LOSS MUTATED    25  16
  7Q LOSS WILD-TYPE 214 122
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
               41               336 
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
               16               122 
$`7Q LOSS MUTATED`
TCGA-18-3419 TCGA-21-1082 TCGA-21-1083 TCGA-21-5786 TCGA-22-1016 TCGA-22-1017 
        1.61       119.80         8.78        33.93        27.02        48.82 
TCGA-22-5481 TCGA-37-3789 TCGA-37-5819 TCGA-39-5029 TCGA-43-2578 TCGA-43-2581 
       79.20         0.43         3.39        24.33        22.49        38.66 
TCGA-43-6770 TCGA-43-6771 TCGA-46-6026 TCGA-56-1622 TCGA-56-6546 TCGA-56-7580 
       10.19         5.42        13.87        28.93         1.02         1.32 
TCGA-56-8629 TCGA-60-2695 TCGA-60-2703 TCGA-60-2712 TCGA-66-2754 TCGA-66-2773 
        1.12        21.07        96.82         9.01         2.01         3.02 
TCGA-66-2788 TCGA-66-2793 TCGA-77-7138 TCGA-77-8136 TCGA-77-8139 TCGA-77-8144 
       22.98        10.06        11.18        39.09       104.09        27.39 
TCGA-77-A5GB TCGA-77-A5GH TCGA-85-6560 TCGA-85-7699 TCGA-85-8048 TCGA-85-8353 
       30.81        23.44         0.36         0.03         0.85         1.78 
TCGA-85-A513 TCGA-85-A53L TCGA-90-7767 TCGA-98-8022 TCGA-J1-A4AH 
        0.79         0.43         2.93         7.33         7.30 

$`7Q LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3421 
       11.34        13.02        59.51        28.34        24.92        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       119.54 
TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 
       46.88        99.16        70.13        60.89        34.78        15.55 
TCGA-21-1079 TCGA-21-1080 TCGA-21-1081 TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 
       31.69       122.43         9.30        31.63        88.08        41.69 
TCGA-21-5787 TCGA-21-A5DI TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 
       10.82        32.19        19.99         7.33        14.93         4.31 
TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-4591 TCGA-22-4593 TCGA-22-4594 
       64.21         1.74        14.10        20.45        35.08        48.33 
TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4605 
       24.13         0.56        38.17        34.75        13.12        32.02 
TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       19.30         9.53        11.77        31.73        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 TCGA-22-5482 
       14.60        44.22         0.79        54.28        71.34        11.74 
TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-22-A5C4 
       18.84        30.08        62.86        56.32        16.60         0.95 
TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 
        7.63       114.05        97.94        43.10       173.79       103.53 
TCGA-33-4583 TCGA-33-4586 TCGA-33-4587 TCGA-33-4589 TCGA-33-6737 TCGA-33-6738 
      141.34        14.07        54.44        10.98        19.76        26.99 
TCGA-34-2596 TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 
        2.63        61.61        31.50        28.96        32.84        31.23 
TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 
       50.24        67.79        56.38         9.04        23.24        12.00 
TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 
       14.07        30.94        18.12         4.96         1.08         3.95 
TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 
        0.39         6.54         8.09         7.46         7.82         6.81 
TCGA-37-4141 TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 
        0.39        47.80        74.07        44.71        68.58        55.17 
TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 
       70.03        60.76         1.71         1.94        27.35        36.39 
TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-39-5040 TCGA-43-2576 
       15.58        35.64        35.70        17.88        17.06        40.21 
TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-5670 TCGA-43-6143 TCGA-43-6647 
       27.02        33.07        11.47        18.05        12.36        24.89 
TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 
        3.78         6.97         1.58        66.51         6.64         6.35 
TCGA-43-8118 TCGA-43-A474 TCGA-43-A475 TCGA-43-A56V TCGA-46-3768 TCGA-46-6025 
        2.93        11.61         9.73         5.06         9.96        10.65 
TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 TCGA-52-7810 
        0.39         0.39        29.95        17.79         5.42        30.31 
TCGA-52-7811 TCGA-52-7812 TCGA-56-5897 TCGA-56-5898 TCGA-56-6545 TCGA-56-7221 
        8.75        27.45         0.10        18.25         2.04         0.99 
TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 TCGA-56-7582 TCGA-56-7730 TCGA-56-7822 
        0.43         0.99         1.45         0.85         0.20         0.03 
TCGA-56-8503 TCGA-56-8504 TCGA-56-8622 TCGA-56-8624 TCGA-56-8625 TCGA-56-8626 
        1.35         5.82         1.78         1.18         2.07         0.56 
TCGA-56-8628 TCGA-56-A49D TCGA-56-A4BX TCGA-56-A4BY TCGA-56-A4ZJ TCGA-56-A4ZK 
        0.53         0.99         1.51         0.99         1.02         0.13 
TCGA-56-A5DS TCGA-58-8386 TCGA-58-8387 TCGA-58-8388 TCGA-58-8390 TCGA-58-8391 
        0.26         0.03        13.25        12.43        29.95        71.24 
TCGA-58-8392 TCGA-58-8393 TCGA-58-A46J TCGA-58-A46K TCGA-58-A46L TCGA-58-A46M 
       16.47        34.78        64.87        34.36        36.59        23.24 
TCGA-58-A46N TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2704 TCGA-60-2706 
       17.72         3.58        12.23        10.22        37.94        92.71 
TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2713 
       21.70        80.42        49.48        66.51        41.39        56.91 
TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 
       50.33        35.34        48.49        42.61         3.16        32.28 
TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 
       29.85        35.90        23.57        26.79        11.77        16.96 
TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 TCGA-66-2755 
       43.10         2.01        21.07         0.99         1.02         0.92 
TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 
        0.99         0.99        20.98        25.02         0.99         2.01 
TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 TCGA-66-2770 TCGA-66-2771 
        1.02         2.01         2.01         7.07        23.01        19.00 
TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 
        2.01        19.00        12.03         3.98        12.00        24.95 
TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 
        1.94        25.97        40.01         4.04        22.98         5.03 
TCGA-66-2792 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 
       30.02        54.08         4.01        49.05         2.73         6.64 
TCGA-68-7757 TCGA-68-8250 TCGA-68-8251 TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 
        6.94         8.02         3.12        29.56        73.08        75.09 
TCGA-77-6845 TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 
       23.28        89.95        20.78         0.49        42.25        70.09 
TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 TCGA-77-8007 TCGA-77-8008 
      106.95         0.16        46.78        15.75         6.51        86.76 
TCGA-77-8009 TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 TCGA-77-8133 TCGA-77-8138 
       53.95        37.81        82.92        12.59        53.92        17.69 
TCGA-77-8140 TCGA-77-8143 TCGA-77-8145 TCGA-77-8148 TCGA-77-8150 TCGA-77-8153 
       11.54        26.40         6.97         9.63        54.41        55.33 
TCGA-77-8154 TCGA-77-8156 TCGA-77-A5FZ TCGA-77-A5G3 TCGA-85-6561 TCGA-85-6798 
       35.90         0.33       126.18       117.57         0.79         1.12 
TCGA-85-7696 TCGA-85-7697 TCGA-85-7698 TCGA-85-7843 TCGA-85-7844 TCGA-85-7950 
        0.59         0.33         1.61         1.15         1.25         1.97 
TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 TCGA-85-8276 
        1.97         0.53        16.77        14.07         1.18         0.43 
TCGA-85-8277 TCGA-85-8287 TCGA-85-8288 TCGA-85-8350 TCGA-85-8351 TCGA-85-8352 
        0.36         1.45         1.78         1.97         1.81         2.20 
TCGA-85-8354 TCGA-85-8355 TCGA-85-8479 TCGA-85-8481 TCGA-85-8580 TCGA-85-8582 
        2.01         0.66         0.72         0.66        14.60        13.91 
TCGA-85-8664 TCGA-85-8666 TCGA-85-A4CL TCGA-85-A4QR TCGA-85-A50M TCGA-90-6837 
        0.10        15.58         0.46         0.82         0.62        24.89 
TCGA-90-7766 TCGA-90-7769 TCGA-90-7964 TCGA-90-A4ED TCGA-90-A4EE TCGA-92-7340 
        9.50        11.77        14.07         8.02        10.88         2.70 
TCGA-92-7341 TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 
        3.48         4.01         5.26         2.27         2.86         0.16 
TCGA-94-7943 TCGA-96-7544 TCGA-96-7545 TCGA-96-8169 TCGA-96-8170 TCGA-96-A4JK 
       11.70        39.88        44.15         6.18         6.90         8.98 
TCGA-96-A4JL TCGA-98-7454 TCGA-98-8020 TCGA-98-8021 TCGA-98-8023 TCGA-L3-A4E7 
        6.02         8.42         2.73        13.58        10.13         1.15 
TCGA-L3-A524 TCGA-LA-A446 TCGA-MF-A522 TCGA-NC-A5HE TCGA-NC-A5HG TCGA-NC-A5HI 
       14.76         1.18         3.02        56.61        50.86        37.32 

  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
             0.03              0.03 
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
           119.80            173.79 
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
            10.06             14.07 
[1] "0.0 - 119.8 (10.1)" "0.0 - 173.8 (14.1)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "7Q LOSS MUTATED"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED"   "7Q LOSS MUTATED" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED"   "7Q LOSS MUTATED" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56V        TCGA-46-3768        TCGA-46-6025 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-5898 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-56-7730        TCGA-56-7822        TCGA-56-8503        TCGA-56-8504 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-56-8622        TCGA-56-8624        TCGA-56-8625        TCGA-56-8626 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-56-A4BY        TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-58-8386        TCGA-58-8387        TCGA-58-8388        TCGA-58-8390 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-58-8391        TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-58-A46K        TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-60-2695        TCGA-60-2696        TCGA-60-2697        TCGA-60-2698 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-60-2703        TCGA-60-2704        TCGA-60-2706        TCGA-60-2707 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-60-2708        TCGA-60-2709        TCGA-60-2710        TCGA-60-2711 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-60-2712        TCGA-60-2713        TCGA-60-2714        TCGA-60-2715 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-60-2716        TCGA-60-2719        TCGA-60-2720        TCGA-60-2721 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-60-2722        TCGA-60-2723        TCGA-60-2724        TCGA-60-2725 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-60-2726        TCGA-66-2727        TCGA-66-2734        TCGA-66-2737 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2753        TCGA-66-2754 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-66-2755        TCGA-66-2756        TCGA-66-2757        TCGA-66-2758 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-66-2759        TCGA-66-2763        TCGA-66-2765        TCGA-66-2766 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-66-2767        TCGA-66-2768        TCGA-66-2769        TCGA-66-2770 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-66-2771        TCGA-66-2773        TCGA-66-2777        TCGA-66-2778 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-66-2780        TCGA-66-2781        TCGA-66-2782        TCGA-66-2783 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-66-2785        TCGA-66-2786        TCGA-66-2787        TCGA-66-2788 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-66-2789        TCGA-66-2790        TCGA-66-2791        TCGA-66-2792 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-66-2793        TCGA-66-2794        TCGA-66-2795        TCGA-66-2800 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-68-7755        TCGA-68-7756        TCGA-68-7757        TCGA-68-8250 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-68-8251        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8007 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-77-8008        TCGA-77-8009        TCGA-77-8128        TCGA-77-8130 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-77-8131        TCGA-77-8133        TCGA-77-8136        TCGA-77-8138 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8140        TCGA-77-8143        TCGA-77-8144 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-77-8145        TCGA-77-8148        TCGA-77-8150        TCGA-77-8153 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ        TCGA-77-A5G3 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6560        TCGA-85-6561 
  "7Q LOSS MUTATED"   "7Q LOSS MUTATED"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-7950 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-85-8048        TCGA-85-8049        TCGA-85-8052        TCGA-85-8070 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-85-8071        TCGA-85-8072        TCGA-85-8276        TCGA-85-8277 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-85-8287        TCGA-85-8288        TCGA-85-8350        TCGA-85-8351 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-85-8352        TCGA-85-8353        TCGA-85-8354        TCGA-85-8355 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-85-8479        TCGA-85-8481        TCGA-85-8580        TCGA-85-8582 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-85-8664        TCGA-85-8666        TCGA-85-A4CL        TCGA-85-A4QR 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-85-A50M        TCGA-85-A513        TCGA-85-A53L        TCGA-90-6837 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-90-A4ED        TCGA-90-A4EE        TCGA-92-7340        TCGA-92-7341 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-92-8063        TCGA-92-8064        TCGA-92-8065        TCGA-94-7033 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-94-7557        TCGA-94-7943        TCGA-96-7544        TCGA-96-7545 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-96-8169        TCGA-96-8170        TCGA-96-A4JK        TCGA-96-A4JL 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-NC-A5HI 
"7Q LOSS WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "7Q LOSS MUTATED"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
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  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED"   "7Q LOSS MUTATED" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED"   "7Q LOSS MUTATED" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56V        TCGA-46-3768        TCGA-46-6025 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-56-A4BY        TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-58-8391        TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-60-2695        TCGA-60-2696        TCGA-60-2697        TCGA-60-2698 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-60-2708        TCGA-60-2709        TCGA-60-2710        TCGA-60-2711 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-60-2712        TCGA-60-2713        TCGA-60-2714        TCGA-60-2715 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2753        TCGA-66-2754 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-66-2759        TCGA-66-2763        TCGA-66-2765        TCGA-66-2766 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-66-2785        TCGA-66-2786        TCGA-66-2787        TCGA-66-2788 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-66-2793        TCGA-66-2794        TCGA-66-2795        TCGA-66-2800 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
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  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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  "7Q LOSS MUTATED"   "7Q LOSS MUTATED"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-85-8664        TCGA-85-8666        TCGA-85-A4CL        TCGA-85-A4QR 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-85-A50M        TCGA-85-A513        TCGA-85-A53L        TCGA-90-6837 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-90-A4ED        TCGA-90-A4EE        TCGA-92-7340        TCGA-92-7341 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-96-8169        TCGA-96-8170        TCGA-96-A4JK        TCGA-96-A4JL 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "7Q LOSS MUTATED"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED"   "7Q LOSS MUTATED" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED"   "7Q LOSS MUTATED" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56V        TCGA-46-3768        TCGA-46-6025 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-5898 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-56-7730        TCGA-56-7822        TCGA-56-8503        TCGA-56-8504 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-56-8622        TCGA-56-8624        TCGA-56-8625        TCGA-56-8626 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-56-A4BY        TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-58-8386        TCGA-58-8387        TCGA-58-8388        TCGA-58-8390 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-58-8391        TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-58-A46K        TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-60-2695        TCGA-60-2696        TCGA-60-2697        TCGA-60-2698 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-60-2703        TCGA-60-2704        TCGA-60-2706        TCGA-60-2707 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-60-2708        TCGA-60-2709        TCGA-60-2710        TCGA-60-2711 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-60-2712        TCGA-60-2713        TCGA-60-2714        TCGA-60-2715 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-60-2716        TCGA-60-2719        TCGA-60-2720        TCGA-60-2721 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-60-2722        TCGA-60-2723        TCGA-60-2724        TCGA-60-2725 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-60-2726        TCGA-66-2727        TCGA-66-2734        TCGA-66-2737 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2753        TCGA-66-2754 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-66-2755        TCGA-66-2756        TCGA-66-2757        TCGA-66-2758 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-66-2759        TCGA-66-2763        TCGA-66-2765        TCGA-66-2766 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-66-2767        TCGA-66-2768        TCGA-66-2769        TCGA-66-2770 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-66-2771        TCGA-66-2773        TCGA-66-2777        TCGA-66-2778 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-66-2780        TCGA-66-2781        TCGA-66-2782        TCGA-66-2783 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-66-2785        TCGA-66-2786        TCGA-66-2787        TCGA-66-2788 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-66-2789        TCGA-66-2790        TCGA-66-2791        TCGA-66-2792 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-66-2793        TCGA-66-2794        TCGA-66-2795        TCGA-66-2800 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-68-7755        TCGA-68-7756        TCGA-68-7757        TCGA-68-8250 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-68-8251        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8007 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-77-8008        TCGA-77-8009        TCGA-77-8128        TCGA-77-8130 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-77-8131        TCGA-77-8133        TCGA-77-8136        TCGA-77-8138 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8140        TCGA-77-8143        TCGA-77-8144 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-77-8145        TCGA-77-8148        TCGA-77-8150        TCGA-77-8153 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ        TCGA-77-A5G3 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6560        TCGA-85-6561 
  "7Q LOSS MUTATED"   "7Q LOSS MUTATED"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-7950 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-85-8048        TCGA-85-8049        TCGA-85-8052        TCGA-85-8070 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-85-8071        TCGA-85-8072        TCGA-85-8276        TCGA-85-8277 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-85-8287        TCGA-85-8288        TCGA-85-8350        TCGA-85-8351 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-85-8352        TCGA-85-8353        TCGA-85-8354        TCGA-85-8355 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-85-8479        TCGA-85-8481        TCGA-85-8580        TCGA-85-8582 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-85-8664        TCGA-85-8666        TCGA-85-A4CL        TCGA-85-A4QR 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-85-A50M        TCGA-85-A513        TCGA-85-A53L        TCGA-90-6837 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-90-A4ED        TCGA-90-A4EE        TCGA-92-7340        TCGA-92-7341 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-92-8063        TCGA-92-8064        TCGA-92-8065        TCGA-94-7033 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-94-7557        TCGA-94-7943        TCGA-96-7544        TCGA-96-7545 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-96-8169        TCGA-96-8170        TCGA-96-A4JK        TCGA-96-A4JL 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-NC-A5HI 
"7Q LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D54V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  7Q LOSS MUTATED         0        7       15        0         5        10
  7Q LOSS WILD-TYPE       1       61      118        1        45        61
                   vv
clus                STAGE IIIA STAGE IIIB STAGE IV
  7Q LOSS MUTATED            7          1        0
  7Q LOSS WILD-TYPE         47         19        5
D54V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  7Q LOSS MUTATED     8  31   4   2
  7Q LOSS WILD-TYPE  85 219  40  17
D54V4, multiclass
    clus
vv   7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  T1               8                85
  T2              31               219
  T3               4                40
  T4               2                17
                   vv
clus                 N0  N1  N2  N3
  7Q LOSS MUTATED    27  13   3   0
  7Q LOSS WILD-TYPE 226  96  31   5
D54V5, multiclass
    clus
vv   7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  N0              27               226
  N1              13                96
  N2               3                31
  N3               0                 5
                   vv
clus                 M0  M1  MX
  7Q LOSS MUTATED    38   0   6
  7Q LOSS WILD-TYPE 310   5  41
D54V6, multiclass
    clus
vv   7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  M0              38               310
  M1               0                 5
  MX               6                41
D54V7, binary
                   cls
clus                  0   1
  7Q LOSS MUTATED    10  35
  7Q LOSS WILD-TYPE  91 270
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7Q LOSS MUTATED     10   35
  7Q LOSS WILD-TYPE   91  270
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  FEMALE              10                91
  MALE                35               270
D54V8, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  7Q LOSS MUTATED                                       1
  7Q LOSS WILD-TYPE                                    11
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  7Q LOSS MUTATED                                        0
  7Q LOSS WILD-TYPE                                      6
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  7Q LOSS MUTATED                                         0
  7Q LOSS WILD-TYPE                                       1
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  7Q LOSS MUTATED                                                            44
  7Q LOSS WILD-TYPE                                                         343
D54V9, multiclass
                                                             clus
vv                                                            7Q LOSS MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     1
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                    0
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              44
                                                             clus
vv                                                            7Q LOSS WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      11
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                      6
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               343
D54V10, binary
                   cls
clus                  0   1
  7Q LOSS MUTATED     1  44
  7Q LOSS WILD-TYPE  11 350
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7Q LOSS MUTATED      1   44
  7Q LOSS WILD-TYPE   11  350
     clus
vv    7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  NO                1                11
  YES              44               350
D54V11, continuous
D54V12, continuous
                   vv
clus                 R0  R1  R2  RX
  7Q LOSS MUTATED    41   0   1   2
  7Q LOSS WILD-TYPE 289   8   3  16
D54V13, multiclass
    clus
vv   7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  R0              41               289
  R1               0                 8
  R2               1                 3
  RX               2                16

Clustering(55) Variable = 8P LOSS MUTATION ANALYSIS
D55V1, survival
                   sevent
clus2                 0   1
  8P LOSS MUTATED   113  67
  8P LOSS WILD-TYPE 126  71
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
              180               197 
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
               67                71 
$`8P LOSS MUTATED`
TCGA-18-3406 TCGA-18-3412 TCGA-18-3415 TCGA-18-3419 TCGA-18-4083 TCGA-18-4721 
       12.16        11.34        59.51         1.61         6.15        90.51 
TCGA-18-5592 TCGA-18-5595 TCGA-21-1072 TCGA-21-1076 TCGA-21-1080 TCGA-21-1083 
        3.02        27.16        99.16        60.89       122.43         8.78 
TCGA-21-5782 TCGA-21-5786 TCGA-21-5787 TCGA-22-1000 TCGA-22-1002 TCGA-22-1016 
       31.63        33.93        10.82        14.93         4.31        27.02 
TCGA-22-1017 TCGA-22-4591 TCGA-22-4594 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 
       48.82        20.45        48.33        38.17        34.75        13.12 
TCGA-22-4605 TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 TCGA-22-5477 TCGA-22-5478 
       32.02         9.53        11.77        31.73        44.22         0.79 
TCGA-22-5480 TCGA-22-5481 TCGA-22-5483 TCGA-22-5485 TCGA-22-5491 TCGA-22-5492 
       71.34        79.20        18.84        30.08        56.32        16.60 
TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4586 TCGA-33-4589 TCGA-33-6738 
       43.10       173.79       103.53        14.07        10.98        26.99 
TCGA-34-2596 TCGA-34-2600 TCGA-34-2609 TCGA-34-5236 TCGA-34-5241 TCGA-34-5928 
        2.63        61.61        31.23         9.04        14.07        18.12 
TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 TCGA-37-4135 TCGA-37-4141 TCGA-39-5011 
        3.95         0.43         0.39         6.81         0.39        47.80 
TCGA-39-5021 TCGA-39-5027 TCGA-39-5031 TCGA-39-5037 TCGA-39-5039 TCGA-43-2576 
       68.58        60.76        27.35        35.70        17.88        40.21 
TCGA-43-2581 TCGA-43-5668 TCGA-43-6770 TCGA-43-6771 TCGA-43-7657 TCGA-43-8115 
       38.66        11.47        10.19         5.42         1.58         6.64 
TCGA-43-8116 TCGA-43-8118 TCGA-43-A474 TCGA-46-3768 TCGA-46-6025 TCGA-51-4080 
        6.35         2.93        11.61         9.96        10.65         0.39 
TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 TCGA-52-7810 TCGA-52-7812 TCGA-56-1622 
       29.95        17.79         5.42        30.31        27.45        28.93 
TCGA-56-5897 TCGA-56-5898 TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 TCGA-56-7580 
        0.10        18.25         0.43         0.99         1.45         1.32 
TCGA-56-8504 TCGA-56-8626 TCGA-56-8628 TCGA-56-8629 TCGA-56-A4BX TCGA-56-A4BY 
        5.82         0.56         0.53         1.12         1.51         0.99 
TCGA-56-A5DS TCGA-58-8390 TCGA-58-8392 TCGA-58-8393 TCGA-58-A46K TCGA-58-A46L 
        0.26        29.95        16.47        34.78        34.36        36.59 
TCGA-58-A46M TCGA-60-2698 TCGA-60-2703 TCGA-60-2711 TCGA-60-2713 TCGA-60-2721 
       23.24        10.22        96.82        41.39        56.91        32.28 
TCGA-60-2723 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 TCGA-66-2753 
       35.90        11.77        16.96        43.10         2.01         1.02 
TCGA-66-2754 TCGA-66-2755 TCGA-66-2757 TCGA-66-2759 TCGA-66-2766 TCGA-66-2768 
        2.01         0.92         0.99        25.02         1.02         2.01 
TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2787 
       12.03         3.98        12.00        24.95         1.94        40.01 
TCGA-66-2790 TCGA-66-2791 TCGA-66-2792 TCGA-66-2795 TCGA-68-7755 TCGA-68-8250 
       22.98         5.03        30.02         4.01         2.73         8.02 
TCGA-77-6842 TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 TCGA-77-7337 TCGA-77-7338 
       29.56        75.09        23.28        11.18       106.95         0.16 
TCGA-77-7465 TCGA-77-8008 TCGA-77-8009 TCGA-77-8128 TCGA-77-8130 TCGA-77-8139 
       15.75        86.76        53.95        37.81        82.92       104.09 
TCGA-77-8144 TCGA-77-8145 TCGA-77-8148 TCGA-77-8154 TCGA-77-A5G3 TCGA-85-6561 
       27.39         6.97         9.63        35.90       117.57         0.79 
TCGA-85-6798 TCGA-85-7696 TCGA-85-7697 TCGA-85-7698 TCGA-85-7843 TCGA-85-7844 
        1.12         0.59         0.33         1.61         1.15         1.25 
TCGA-85-7950 TCGA-85-8048 TCGA-85-8070 TCGA-85-8276 TCGA-85-8277 TCGA-85-8350 
        1.97         0.85        16.77         0.43         0.36         1.97 
TCGA-85-8352 TCGA-85-8353 TCGA-85-8354 TCGA-85-A4QR TCGA-85-A50M TCGA-85-A53L 
        2.20         1.78         2.01         0.82         0.62         0.43 
TCGA-90-7766 TCGA-90-7767 TCGA-90-A4ED TCGA-92-7341 TCGA-92-8063 TCGA-94-7557 
        9.50         2.93         8.02         3.48         4.01         0.16 
TCGA-96-7544 TCGA-96-8170 TCGA-96-A4JK TCGA-98-8020 TCGA-98-8021 TCGA-98-8022 
       39.88         6.90         8.98         2.73        13.58         7.33 
TCGA-J1-A4AH TCGA-LA-A446 TCGA-MF-A522 TCGA-NC-A5HE TCGA-NC-A5HG TCGA-NC-A5HI 
        7.30         1.18         3.02        56.61        50.86        37.32 

$`8P LOSS WILD-TYPE`
TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 TCGA-18-3414 
        4.47        81.07        79.46         4.80        46.52        13.02 
TCGA-18-3416 TCGA-18-3417 TCGA-18-3421 TCGA-18-4086 TCGA-21-1070 TCGA-21-1071 
       28.34        24.92        43.76         2.79       119.54        46.88 
TCGA-21-1075 TCGA-21-1077 TCGA-21-1078 TCGA-21-1079 TCGA-21-1081 TCGA-21-1082 
       70.13        34.78        15.55        31.69         9.30       119.80 
TCGA-21-5783 TCGA-21-5784 TCGA-21-A5DI TCGA-22-0940 TCGA-22-0944 TCGA-22-1005 
       88.08        41.69        32.19        19.99         7.33        64.21 
TCGA-22-1011 TCGA-22-1012 TCGA-22-4593 TCGA-22-4595 TCGA-22-4596 TCGA-22-4607 
        1.74        14.10        35.08        24.13         0.56        19.30 
TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5479 TCGA-22-5482 TCGA-22-5489 
       64.90        63.52        14.60        54.28        11.74        62.86 
TCGA-22-A5C4 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4583 TCGA-33-4587 
        0.95         7.63       114.05        97.94       141.34        54.44 
TCGA-33-6737 TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 
       19.76        31.50        28.96        32.84        50.24        67.79 
TCGA-34-5234 TCGA-34-5239 TCGA-34-5240 TCGA-34-5927 TCGA-34-5929 TCGA-34-7107 
       56.38        23.24        12.00        30.94         4.96         1.08 
TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 TCGA-37-5819 TCGA-39-5016 
        6.54         8.09         7.46         7.82         3.39        74.07 
TCGA-39-5019 TCGA-39-5022 TCGA-39-5024 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 
       44.71        55.17        70.03         1.71        24.33         1.94 
TCGA-39-5034 TCGA-39-5035 TCGA-39-5036 TCGA-39-5040 TCGA-43-2578 TCGA-43-3394 
       36.39        15.58        35.64        17.06        22.49        27.02 
TCGA-43-3920 TCGA-43-5670 TCGA-43-6143 TCGA-43-6647 TCGA-43-6773 TCGA-43-7656 
       33.07        18.05        12.36        24.89         3.78         6.97 
TCGA-43-7658 TCGA-43-A475 TCGA-43-A56V TCGA-46-6026 TCGA-51-4079 TCGA-52-7811 
       66.51         9.73         5.06        13.87         0.39         8.75 
TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 TCGA-56-7582 TCGA-56-7730 TCGA-56-7822 
        2.04         1.02         0.99         0.85         0.20         0.03 
TCGA-56-8503 TCGA-56-8622 TCGA-56-8624 TCGA-56-8625 TCGA-56-A49D TCGA-56-A4ZJ 
        1.35         1.78         1.18         2.07         0.99         1.02 
TCGA-56-A4ZK TCGA-58-8386 TCGA-58-8387 TCGA-58-8388 TCGA-58-8391 TCGA-58-A46J 
        0.13         0.03        13.25        12.43        71.24        64.87 
TCGA-58-A46N TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 TCGA-60-2704 TCGA-60-2706 
       17.72        21.07         3.58        12.23        37.94        92.71 
TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2712 TCGA-60-2714 
       21.70        80.42        49.48        66.51         9.01        50.33 
TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 TCGA-60-2722 TCGA-60-2724 
       35.34        48.49        42.61         3.16        29.85        23.57 
TCGA-60-2725 TCGA-66-2742 TCGA-66-2744 TCGA-66-2756 TCGA-66-2758 TCGA-66-2763 
       26.79        21.07         0.99         0.99        20.98         0.99 
TCGA-66-2765 TCGA-66-2767 TCGA-66-2769 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 
        2.01         2.01         7.07        23.01        19.00         3.02 
TCGA-66-2777 TCGA-66-2778 TCGA-66-2786 TCGA-66-2788 TCGA-66-2789 TCGA-66-2793 
        2.01        19.00        25.97        22.98         4.04        10.06 
TCGA-66-2794 TCGA-66-2800 TCGA-68-7756 TCGA-68-7757 TCGA-68-8251 TCGA-77-6843 
       54.08        49.05         6.64         6.94         3.12        73.08 
TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 TCGA-77-7463 
       89.95        20.78         0.49        42.25        70.09        46.78 
TCGA-77-8007 TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 TCGA-77-8140 
        6.51        12.59        53.92        39.09        17.69        11.54 
TCGA-77-8143 TCGA-77-8150 TCGA-77-8153 TCGA-77-8156 TCGA-77-A5FZ TCGA-77-A5GB 
       26.40        54.41        55.33         0.33       126.18        30.81 
TCGA-77-A5GH TCGA-85-6560 TCGA-85-7699 TCGA-85-8049 TCGA-85-8052 TCGA-85-8071 
       23.44         0.36         0.03         1.97         0.53        14.07 
TCGA-85-8072 TCGA-85-8287 TCGA-85-8288 TCGA-85-8351 TCGA-85-8355 TCGA-85-8479 
        1.18         1.45         1.78         1.81         0.66         0.72 
TCGA-85-8481 TCGA-85-8580 TCGA-85-8582 TCGA-85-8664 TCGA-85-8666 TCGA-85-A4CL 
        0.66        14.60        13.91         0.10        15.58         0.46 
TCGA-85-A513 TCGA-90-6837 TCGA-90-7769 TCGA-90-7964 TCGA-90-A4EE TCGA-92-7340 
        0.79        24.89        11.77        14.07        10.88         2.70 
TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 TCGA-94-7943 TCGA-96-7545 TCGA-96-8169 
        5.26         2.27         2.86        11.70        44.15         6.18 
TCGA-96-A4JL TCGA-98-7454 TCGA-98-8023 TCGA-L3-A4E7 TCGA-L3-A524 
        6.02         8.42        10.13         1.15        14.76 

  8P LOSS MUTATED 8P LOSS WILD-TYPE 
             0.10              0.03 
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
           173.79            141.34 
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
            11.69             14.60 
[1] "0.1 - 173.8 (11.7)" "0.0 - 141.3 (14.6)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-43-A475        TCGA-43-A56V        TCGA-46-3768        TCGA-46-6025 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-5898 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-56-7730        TCGA-56-7822        TCGA-56-8503        TCGA-56-8504 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-56-8622        TCGA-56-8624        TCGA-56-8625        TCGA-56-8626 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-56-A4BY        TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-58-8386        TCGA-58-8387        TCGA-58-8388        TCGA-58-8390 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-58-8391        TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-58-A46K        TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-60-2695        TCGA-60-2696        TCGA-60-2697        TCGA-60-2698 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-60-2703        TCGA-60-2704        TCGA-60-2706        TCGA-60-2707 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-60-2708        TCGA-60-2709        TCGA-60-2710        TCGA-60-2711 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-60-2712        TCGA-60-2713        TCGA-60-2714        TCGA-60-2715 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-60-2716        TCGA-60-2719        TCGA-60-2720        TCGA-60-2721 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-60-2722        TCGA-60-2723        TCGA-60-2724        TCGA-60-2725 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-60-2726        TCGA-66-2727        TCGA-66-2734        TCGA-66-2737 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2753        TCGA-66-2754 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-66-2755        TCGA-66-2756        TCGA-66-2757        TCGA-66-2758 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-66-2759        TCGA-66-2763        TCGA-66-2765        TCGA-66-2766 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-66-2767        TCGA-66-2768        TCGA-66-2769        TCGA-66-2770 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-66-2771        TCGA-66-2773        TCGA-66-2777        TCGA-66-2778 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-66-2780        TCGA-66-2781        TCGA-66-2782        TCGA-66-2783 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-66-2785        TCGA-66-2786        TCGA-66-2787        TCGA-66-2788 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-66-2789        TCGA-66-2790        TCGA-66-2791        TCGA-66-2792 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-66-2793        TCGA-66-2794        TCGA-66-2795        TCGA-66-2800 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-68-7755        TCGA-68-7756        TCGA-68-7757        TCGA-68-8250 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-68-8251        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8007 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-77-8008        TCGA-77-8009        TCGA-77-8128        TCGA-77-8130 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-77-8131        TCGA-77-8133        TCGA-77-8136        TCGA-77-8138 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8140        TCGA-77-8143        TCGA-77-8144 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-77-8145        TCGA-77-8148        TCGA-77-8150        TCGA-77-8153 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ        TCGA-77-A5G3 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6560        TCGA-85-6561 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-7950 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-85-8048        TCGA-85-8049        TCGA-85-8052        TCGA-85-8070 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-85-8071        TCGA-85-8072        TCGA-85-8276        TCGA-85-8277 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-85-8287        TCGA-85-8288        TCGA-85-8350        TCGA-85-8351 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-85-8352        TCGA-85-8353        TCGA-85-8354        TCGA-85-8355 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-85-8479        TCGA-85-8481        TCGA-85-8580        TCGA-85-8582 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-85-8664        TCGA-85-8666        TCGA-85-A4CL        TCGA-85-A4QR 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-85-A50M        TCGA-85-A513        TCGA-85-A53L        TCGA-90-6837 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-90-A4ED        TCGA-90-A4EE        TCGA-92-7340        TCGA-92-7341 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-92-8063        TCGA-92-8064        TCGA-92-8065        TCGA-94-7033 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-94-7557        TCGA-94-7943        TCGA-96-7544        TCGA-96-7545 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-96-8169        TCGA-96-8170        TCGA-96-A4JK        TCGA-96-A4JL 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-NC-A5HI 
  "8P LOSS MUTATED" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-43-A475        TCGA-43-A56V        TCGA-46-3768        TCGA-46-6025 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-5898 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-56-7730        TCGA-56-7822        TCGA-56-8503        TCGA-56-8504 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-56-8622        TCGA-56-8624        TCGA-56-8625        TCGA-56-8626 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-56-A4BY        TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-58-8386        TCGA-58-8387        TCGA-58-8388        TCGA-58-8390 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-58-8391        TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-58-A46K        TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-60-2695        TCGA-60-2696        TCGA-60-2697        TCGA-60-2698 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-60-2703        TCGA-60-2704        TCGA-60-2706        TCGA-60-2707 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-60-2708        TCGA-60-2709        TCGA-60-2710        TCGA-60-2711 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-60-2712        TCGA-60-2713        TCGA-60-2714        TCGA-60-2715 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-60-2716        TCGA-60-2719        TCGA-60-2720        TCGA-60-2721 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-60-2722        TCGA-60-2723        TCGA-60-2724        TCGA-60-2725 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-60-2726        TCGA-66-2727        TCGA-66-2734        TCGA-66-2737 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2753        TCGA-66-2754 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-66-2755        TCGA-66-2756        TCGA-66-2757        TCGA-66-2758 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-66-2759        TCGA-66-2763        TCGA-66-2765        TCGA-66-2766 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-66-2767        TCGA-66-2768        TCGA-66-2769        TCGA-66-2770 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-66-2771        TCGA-66-2773        TCGA-66-2777        TCGA-66-2778 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-66-2780        TCGA-66-2781        TCGA-66-2782        TCGA-66-2783 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-66-2785        TCGA-66-2786        TCGA-66-2787        TCGA-66-2788 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-66-2789        TCGA-66-2790        TCGA-66-2791        TCGA-66-2792 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-66-2793        TCGA-66-2794        TCGA-66-2795        TCGA-66-2800 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-68-7755        TCGA-68-7756        TCGA-68-7757        TCGA-68-8250 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-68-8251        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8007 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-77-8008        TCGA-77-8009        TCGA-77-8128        TCGA-77-8130 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-77-8131        TCGA-77-8133        TCGA-77-8136        TCGA-77-8138 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8140        TCGA-77-8143        TCGA-77-8144 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-77-8145        TCGA-77-8148        TCGA-77-8150        TCGA-77-8153 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ        TCGA-77-A5G3 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6560        TCGA-85-6561 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-7950 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-85-8048        TCGA-85-8049        TCGA-85-8052        TCGA-85-8070 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-85-8071        TCGA-85-8072        TCGA-85-8276        TCGA-85-8277 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-85-8287        TCGA-85-8288        TCGA-85-8350        TCGA-85-8351 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-85-8352        TCGA-85-8353        TCGA-85-8354        TCGA-85-8355 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-85-8479        TCGA-85-8481        TCGA-85-8580        TCGA-85-8582 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-85-8664        TCGA-85-8666        TCGA-85-A4CL        TCGA-85-A4QR 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-85-A50M        TCGA-85-A513        TCGA-85-A53L        TCGA-90-6837 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-90-A4ED        TCGA-90-A4EE        TCGA-92-7340        TCGA-92-7341 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-92-8063        TCGA-92-8064        TCGA-92-8065        TCGA-94-7033 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-94-7557        TCGA-94-7943        TCGA-96-7544        TCGA-96-7545 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-96-8169        TCGA-96-8170        TCGA-96-A4JK        TCGA-96-A4JL 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-NC-A5HI 
  "8P LOSS MUTATED" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-43-A475        TCGA-43-A56V        TCGA-46-3768        TCGA-46-6025 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-5898 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-56-7730        TCGA-56-7822        TCGA-56-8503        TCGA-56-8504 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-56-8622        TCGA-56-8624        TCGA-56-8625        TCGA-56-8626 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-56-A4BY        TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-58-8386        TCGA-58-8387        TCGA-58-8388        TCGA-58-8390 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-58-8391        TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-58-A46K        TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-60-2695        TCGA-60-2696        TCGA-60-2697        TCGA-60-2698 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-60-2703        TCGA-60-2704        TCGA-60-2706        TCGA-60-2707 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-60-2708        TCGA-60-2709        TCGA-60-2710        TCGA-60-2711 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-60-2712        TCGA-60-2713        TCGA-60-2714        TCGA-60-2715 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-60-2716        TCGA-60-2719        TCGA-60-2720        TCGA-60-2721 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-60-2722        TCGA-60-2723        TCGA-60-2724        TCGA-60-2725 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-60-2726        TCGA-66-2727        TCGA-66-2734        TCGA-66-2737 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2753        TCGA-66-2754 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-66-2755        TCGA-66-2756        TCGA-66-2757        TCGA-66-2758 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-66-2759        TCGA-66-2763        TCGA-66-2765        TCGA-66-2766 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-66-2767        TCGA-66-2768        TCGA-66-2769        TCGA-66-2770 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-66-2771        TCGA-66-2773        TCGA-66-2777        TCGA-66-2778 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-66-2780        TCGA-66-2781        TCGA-66-2782        TCGA-66-2783 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-66-2785        TCGA-66-2786        TCGA-66-2787        TCGA-66-2788 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-66-2789        TCGA-66-2790        TCGA-66-2791        TCGA-66-2792 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-66-2793        TCGA-66-2794        TCGA-66-2795        TCGA-66-2800 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-68-7755        TCGA-68-7756        TCGA-68-7757        TCGA-68-8250 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-68-8251        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8007 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-77-8008        TCGA-77-8009        TCGA-77-8128        TCGA-77-8130 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-77-8131        TCGA-77-8133        TCGA-77-8136        TCGA-77-8138 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8140        TCGA-77-8143        TCGA-77-8144 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-77-8145        TCGA-77-8148        TCGA-77-8150        TCGA-77-8153 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ        TCGA-77-A5G3 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6560        TCGA-85-6561 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-7950 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-85-8048        TCGA-85-8049        TCGA-85-8052        TCGA-85-8070 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-85-8071        TCGA-85-8072        TCGA-85-8276        TCGA-85-8277 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-85-8287        TCGA-85-8288        TCGA-85-8350        TCGA-85-8351 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-85-8352        TCGA-85-8353        TCGA-85-8354        TCGA-85-8355 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-85-8479        TCGA-85-8481        TCGA-85-8580        TCGA-85-8582 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-85-8664        TCGA-85-8666        TCGA-85-A4CL        TCGA-85-A4QR 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-85-A50M        TCGA-85-A513        TCGA-85-A53L        TCGA-90-6837 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-90-A4ED        TCGA-90-A4EE        TCGA-92-7340        TCGA-92-7341 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-92-8063        TCGA-92-8064        TCGA-92-8065        TCGA-94-7033 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-94-7557        TCGA-94-7943        TCGA-96-7544        TCGA-96-7545 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-96-8169        TCGA-96-8170        TCGA-96-A4JK        TCGA-96-A4JL 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-NC-A5HI 
  "8P LOSS MUTATED" 
[1] "hr=" "1.1"
D55V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  8P LOSS MUTATED         0       37       58        0        27        37
  8P LOSS WILD-TYPE       1       31       75        1        23        34
                   vv
clus                STAGE IIIA STAGE IIIB STAGE IV
  8P LOSS MUTATED           29          7        0
  8P LOSS WILD-TYPE         25         13        5
D55V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  8P LOSS MUTATED    46 120  25   5
  8P LOSS WILD-TYPE  47 130  19  14
D55V4, multiclass
    clus
vv   8P LOSS MUTATED 8P LOSS WILD-TYPE
  T1              46                47
  T2             120               130
  T3              25                19
  T4               5                14
                   vv
clus                 N0  N1  N2  N3
  8P LOSS MUTATED   120  56  18   2
  8P LOSS WILD-TYPE 133  53  16   3
D55V5, multiclass
    clus
vv   8P LOSS MUTATED 8P LOSS WILD-TYPE
  N0             120               133
  N1              56                53
  N2              18                16
  N3               2                 3
                   vv
clus                 M0  M1  MX
  8P LOSS MUTATED   169   0  24
  8P LOSS WILD-TYPE 179   5  23
D55V6, multiclass
    clus
vv   8P LOSS MUTATED 8P LOSS WILD-TYPE
  M0             169               179
  M1               0                 5
  MX              24                23
D55V7, binary
                   cls
clus                  0   1
  8P LOSS MUTATED    43 153
  8P LOSS WILD-TYPE  58 152
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8P LOSS MUTATED     43  153
  8P LOSS WILD-TYPE   58  152
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  FEMALE              43                58
  MALE               153               152
D55V8, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  8P LOSS MUTATED                                       5
  8P LOSS WILD-TYPE                                     7
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  8P LOSS MUTATED                                        1
  8P LOSS WILD-TYPE                                      5
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  8P LOSS MUTATED                                         0
  8P LOSS WILD-TYPE                                       1
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  8P LOSS MUTATED                                                           190
  8P LOSS WILD-TYPE                                                         197
D55V9, multiclass
                                                             clus
vv                                                            8P LOSS MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     5
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                    1
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             190
                                                             clus
vv                                                            8P LOSS WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       7
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                      5
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               197
D55V10, binary
                   cls
clus                  0   1
  8P LOSS MUTATED     6 190
  8P LOSS WILD-TYPE   6 204
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8P LOSS MUTATED      6  190
  8P LOSS WILD-TYPE    6  204
     clus
vv    8P LOSS MUTATED 8P LOSS WILD-TYPE
  NO                6                 6
  YES             190               204
D55V11, continuous
D55V12, continuous
                   vv
clus                 R0  R1  R2  RX
  8P LOSS MUTATED   161   4   2   8
  8P LOSS WILD-TYPE 169   4   2  10
D55V13, multiclass
    clus
vv   8P LOSS MUTATED 8P LOSS WILD-TYPE
  R0             161               169
  R1               4                 4
  R2               2                 2
  RX               8                10

Clustering(56) Variable = 8Q LOSS MUTATION ANALYSIS
D56V1, survival
                   sevent
clus2                 0   1
  8Q LOSS MUTATED    25   8
  8Q LOSS WILD-TYPE 214 130
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
               33               344 
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
                8               130 
$`8Q LOSS MUTATED`
TCGA-21-1072 TCGA-22-5483 TCGA-33-4586 TCGA-33-6738 TCGA-37-3792 TCGA-37-4135 
       99.16        18.84        14.07        26.99         0.39         6.81 
TCGA-37-4141 TCGA-39-5011 TCGA-39-5037 TCGA-43-6771 TCGA-46-6025 TCGA-52-7622 
        0.39        47.80        35.70         5.42        10.65        17.79 
TCGA-52-7809 TCGA-56-7730 TCGA-56-8629 TCGA-58-A46K TCGA-66-2727 TCGA-66-2766 
        5.42         0.20         1.12        34.36        16.96         1.02 
TCGA-66-2791 TCGA-77-8144 TCGA-77-8154 TCGA-85-6561 TCGA-85-7844 TCGA-85-8276 
        5.03        27.39        35.90         0.79         1.25         0.43 
TCGA-85-8277 TCGA-85-8352 TCGA-85-A50M TCGA-85-A53L TCGA-90-7766 TCGA-90-A4ED 
        0.36         2.20         0.62         0.43         9.50         8.02 
TCGA-MF-A522 TCGA-NC-A5HE TCGA-NC-A5HI 
        3.02        56.61        37.32 

$`8Q LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 
      119.54        46.88        70.13        60.89        34.78        15.55 
TCGA-21-1079 TCGA-21-1080 TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 
       31.69       122.43         9.30       119.80         8.78        31.63 
TCGA-21-5783 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-21-A5DI TCGA-22-0940 
       88.08        41.69        33.93        10.82        32.19        19.99 
TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 
        7.33        14.93         4.31        64.21         1.74        14.10 
TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 TCGA-22-4593 TCGA-22-4594 TCGA-22-4595 
       27.02        48.82        20.45        35.08        48.33        24.13 
TCGA-22-4596 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 
        0.56        38.17        34.75        13.12        32.02        19.30 
TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 
        9.53        11.77        31.73        64.90        63.52        14.60 
TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 TCGA-22-5482 
       44.22         0.79        54.28        71.34        79.20        11.74 
TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-22-A5C4 TCGA-33-4532 
       30.08        62.86        56.32        16.60         0.95         7.63 
TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 
      114.05        97.94        43.10       173.79       103.53       141.34 
TCGA-33-4587 TCGA-33-4589 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2604 
       54.44        10.98        19.76         2.63        61.61        31.50 
TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 
       28.96        32.84        31.23        50.24        67.79        56.38 
TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 
        9.04        23.24        12.00        14.07        30.94        18.12 
TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 TCGA-37-4129 TCGA-37-4130 
        4.96         1.08         3.95         0.43         6.54         8.09 
TCGA-37-4132 TCGA-37-4133 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 
        7.46         7.82         3.39        74.07        44.71        68.58 
TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 
       55.17        70.03        60.76         1.71        24.33         1.94 
TCGA-39-5031 TCGA-39-5034 TCGA-39-5035 TCGA-39-5036 TCGA-39-5039 TCGA-39-5040 
       27.35        36.39        15.58        35.64        17.88        17.06 
TCGA-43-2576 TCGA-43-2578 TCGA-43-2581 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 
       40.21        22.49        38.66        27.02        33.07        11.47 
TCGA-43-5670 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6773 TCGA-43-7656 
       18.05        12.36        24.89        10.19         3.78         6.97 
TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 TCGA-43-8118 TCGA-43-A474 
        1.58        66.51         6.64         6.35         2.93        11.61 
TCGA-43-A475 TCGA-43-A56V TCGA-46-3768 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 
        9.73         5.06         9.96        13.87         0.39         0.39 
TCGA-51-4081 TCGA-52-7810 TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 
       29.95        30.31         8.75        27.45        28.93         0.10 
TCGA-56-5898 TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 
       18.25         2.04         1.02         0.99         0.43         0.99 
TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 TCGA-56-7822 TCGA-56-8503 TCGA-56-8504 
        1.45         1.32         0.85         0.03         1.35         5.82 
TCGA-56-8622 TCGA-56-8624 TCGA-56-8625 TCGA-56-8626 TCGA-56-8628 TCGA-56-A49D 
        1.78         1.18         2.07         0.56         0.53         0.99 
TCGA-56-A4BX TCGA-56-A4BY TCGA-56-A4ZJ TCGA-56-A4ZK TCGA-56-A5DS TCGA-58-8386 
        1.51         0.99         1.02         0.13         0.26         0.03 
TCGA-58-8387 TCGA-58-8388 TCGA-58-8390 TCGA-58-8391 TCGA-58-8392 TCGA-58-8393 
       13.25        12.43        29.95        71.24        16.47        34.78 
TCGA-58-A46J TCGA-58-A46L TCGA-58-A46M TCGA-58-A46N TCGA-60-2695 TCGA-60-2696 
       64.87        36.59        23.24        17.72        21.07         3.58 
TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 
       12.23        10.22        96.82        37.94        92.71        21.70 
TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 
       80.42        49.48        66.51        41.39         9.01        56.91 
TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 
       50.33        35.34        48.49        42.61         3.16        32.28 
TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2734 
       29.85        35.90        23.57        26.79        11.77        43.10 
TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 
        2.01        21.07         0.99         1.02         2.01         0.92 
TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 
        0.99         0.99        20.98        25.02         0.99         2.01 
TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 
        2.01         2.01         7.07        23.01        19.00         3.02 
TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 
        2.01        19.00        12.03         3.98        12.00        24.95 
TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 
        1.94        25.97        40.01        22.98         4.04        22.98 
TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 
       30.02        10.06        54.08         4.01        49.05         2.73 
TCGA-68-7756 TCGA-68-7757 TCGA-68-8250 TCGA-68-8251 TCGA-77-6842 TCGA-77-6843 
        6.64         6.94         8.02         3.12        29.56        73.08 
TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 
       75.09        23.28        11.18        89.95        20.78         0.49 
TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 
       42.25        70.09       106.95         0.16        46.78        15.75 
TCGA-77-8007 TCGA-77-8008 TCGA-77-8009 TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 
        6.51        86.76        53.95        37.81        82.92        12.59 
TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 TCGA-77-8143 
       53.92        39.09        17.69       104.09        11.54        26.40 
TCGA-77-8145 TCGA-77-8148 TCGA-77-8150 TCGA-77-8153 TCGA-77-8156 TCGA-77-A5FZ 
        6.97         9.63        54.41        55.33         0.33       126.18 
TCGA-77-A5G3 TCGA-77-A5GB TCGA-77-A5GH TCGA-85-6560 TCGA-85-6798 TCGA-85-7696 
      117.57        30.81        23.44         0.36         1.12         0.59 
TCGA-85-7697 TCGA-85-7698 TCGA-85-7699 TCGA-85-7843 TCGA-85-7950 TCGA-85-8048 
        0.33         1.61         0.03         1.15         1.97         0.85 
TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 TCGA-85-8287 
        1.97         0.53        16.77        14.07         1.18         1.45 
TCGA-85-8288 TCGA-85-8350 TCGA-85-8351 TCGA-85-8353 TCGA-85-8354 TCGA-85-8355 
        1.78         1.97         1.81         1.78         2.01         0.66 
TCGA-85-8479 TCGA-85-8481 TCGA-85-8580 TCGA-85-8582 TCGA-85-8664 TCGA-85-8666 
        0.72         0.66        14.60        13.91         0.10        15.58 
TCGA-85-A4CL TCGA-85-A4QR TCGA-85-A513 TCGA-90-6837 TCGA-90-7767 TCGA-90-7769 
        0.46         0.82         0.79        24.89         2.93        11.77 
TCGA-90-7964 TCGA-90-A4EE TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 TCGA-92-8064 
       14.07        10.88         2.70         3.48         4.01         5.26 
TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 TCGA-94-7943 TCGA-96-7544 TCGA-96-7545 
        2.27         2.86         0.16        11.70        39.88        44.15 
TCGA-96-8169 TCGA-96-8170 TCGA-96-A4JK TCGA-96-A4JL TCGA-98-7454 TCGA-98-8020 
        6.18         6.90         8.98         6.02         8.42         2.73 
TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 TCGA-J1-A4AH TCGA-L3-A4E7 TCGA-L3-A524 
       13.58         7.33        10.13         7.30         1.15        14.76 
TCGA-LA-A446 TCGA-NC-A5HG 
        1.18        50.86 

  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
             0.20              0.03 
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
            99.16            173.79 
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
             6.81             14.07 
[1] "0.2 - 99.2 (6.8)"   "0.0 - 173.8 (14.1)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56V        TCGA-46-3768        TCGA-46-6025 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
  "8Q LOSS MUTATED"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-5898 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-56-7730        TCGA-56-7822        TCGA-56-8503        TCGA-56-8504 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-56-8622        TCGA-56-8624        TCGA-56-8625        TCGA-56-8626 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-56-A4BY        TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-58-8386        TCGA-58-8387        TCGA-58-8388        TCGA-58-8390 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-58-8391        TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-58-A46K        TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-60-2695        TCGA-60-2696        TCGA-60-2697        TCGA-60-2698 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-60-2703        TCGA-60-2704        TCGA-60-2706        TCGA-60-2707 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-60-2708        TCGA-60-2709        TCGA-60-2710        TCGA-60-2711 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-60-2712        TCGA-60-2713        TCGA-60-2714        TCGA-60-2715 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-60-2716        TCGA-60-2719        TCGA-60-2720        TCGA-60-2721 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-60-2722        TCGA-60-2723        TCGA-60-2724        TCGA-60-2725 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-60-2726        TCGA-66-2727        TCGA-66-2734        TCGA-66-2737 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2753        TCGA-66-2754 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-66-2755        TCGA-66-2756        TCGA-66-2757        TCGA-66-2758 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-66-2759        TCGA-66-2763        TCGA-66-2765        TCGA-66-2766 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-66-2767        TCGA-66-2768        TCGA-66-2769        TCGA-66-2770 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-66-2771        TCGA-66-2773        TCGA-66-2777        TCGA-66-2778 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-66-2780        TCGA-66-2781        TCGA-66-2782        TCGA-66-2783 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-66-2785        TCGA-66-2786        TCGA-66-2787        TCGA-66-2788 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-66-2789        TCGA-66-2790        TCGA-66-2791        TCGA-66-2792 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-66-2793        TCGA-66-2794        TCGA-66-2795        TCGA-66-2800 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-68-7755        TCGA-68-7756        TCGA-68-7757        TCGA-68-8250 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-68-8251        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8007 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-77-8008        TCGA-77-8009        TCGA-77-8128        TCGA-77-8130 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-77-8131        TCGA-77-8133        TCGA-77-8136        TCGA-77-8138 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8140        TCGA-77-8143        TCGA-77-8144 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-77-8145        TCGA-77-8148        TCGA-77-8150        TCGA-77-8153 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ        TCGA-77-A5G3 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6560        TCGA-85-6561 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-7950 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-85-8048        TCGA-85-8049        TCGA-85-8052        TCGA-85-8070 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-85-8071        TCGA-85-8072        TCGA-85-8276        TCGA-85-8277 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED"   "8Q LOSS MUTATED" 
       TCGA-85-8287        TCGA-85-8288        TCGA-85-8350        TCGA-85-8351 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-85-8352        TCGA-85-8353        TCGA-85-8354        TCGA-85-8355 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-85-8479        TCGA-85-8481        TCGA-85-8580        TCGA-85-8582 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-85-8664        TCGA-85-8666        TCGA-85-A4CL        TCGA-85-A4QR 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-85-A50M        TCGA-85-A513        TCGA-85-A53L        TCGA-90-6837 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-90-A4ED        TCGA-90-A4EE        TCGA-92-7340        TCGA-92-7341 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-92-8063        TCGA-92-8064        TCGA-92-8065        TCGA-94-7033 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-94-7557        TCGA-94-7943        TCGA-96-7544        TCGA-96-7545 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-96-8169        TCGA-96-8170        TCGA-96-A4JK        TCGA-96-A4JL 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-NC-A5HI 
  "8Q LOSS MUTATED" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56V        TCGA-46-3768        TCGA-46-6025 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
  "8Q LOSS MUTATED"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-5898 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-56-7730        TCGA-56-7822        TCGA-56-8503        TCGA-56-8504 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-56-8622        TCGA-56-8624        TCGA-56-8625        TCGA-56-8626 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-56-A4BY        TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-58-8386        TCGA-58-8387        TCGA-58-8388        TCGA-58-8390 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-58-8391        TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-58-A46K        TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-60-2695        TCGA-60-2696        TCGA-60-2697        TCGA-60-2698 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-60-2703        TCGA-60-2704        TCGA-60-2706        TCGA-60-2707 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-60-2708        TCGA-60-2709        TCGA-60-2710        TCGA-60-2711 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-60-2712        TCGA-60-2713        TCGA-60-2714        TCGA-60-2715 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-60-2716        TCGA-60-2719        TCGA-60-2720        TCGA-60-2721 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-60-2722        TCGA-60-2723        TCGA-60-2724        TCGA-60-2725 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-60-2726        TCGA-66-2727        TCGA-66-2734        TCGA-66-2737 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2753        TCGA-66-2754 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-66-2755        TCGA-66-2756        TCGA-66-2757        TCGA-66-2758 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-66-2759        TCGA-66-2763        TCGA-66-2765        TCGA-66-2766 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-66-2767        TCGA-66-2768        TCGA-66-2769        TCGA-66-2770 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-66-2771        TCGA-66-2773        TCGA-66-2777        TCGA-66-2778 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-66-2780        TCGA-66-2781        TCGA-66-2782        TCGA-66-2783 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-66-2785        TCGA-66-2786        TCGA-66-2787        TCGA-66-2788 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-66-2789        TCGA-66-2790        TCGA-66-2791        TCGA-66-2792 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-66-2793        TCGA-66-2794        TCGA-66-2795        TCGA-66-2800 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-68-7755        TCGA-68-7756        TCGA-68-7757        TCGA-68-8250 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-68-8251        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8007 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-77-8008        TCGA-77-8009        TCGA-77-8128        TCGA-77-8130 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-77-8131        TCGA-77-8133        TCGA-77-8136        TCGA-77-8138 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8140        TCGA-77-8143        TCGA-77-8144 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-77-8145        TCGA-77-8148        TCGA-77-8150        TCGA-77-8153 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ        TCGA-77-A5G3 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6560        TCGA-85-6561 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-7950 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-85-8048        TCGA-85-8049        TCGA-85-8052        TCGA-85-8070 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-85-8071        TCGA-85-8072        TCGA-85-8276        TCGA-85-8277 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED"   "8Q LOSS MUTATED" 
       TCGA-85-8287        TCGA-85-8288        TCGA-85-8350        TCGA-85-8351 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-85-8352        TCGA-85-8353        TCGA-85-8354        TCGA-85-8355 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-85-8479        TCGA-85-8481        TCGA-85-8580        TCGA-85-8582 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-85-8664        TCGA-85-8666        TCGA-85-A4CL        TCGA-85-A4QR 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-85-A50M        TCGA-85-A513        TCGA-85-A53L        TCGA-90-6837 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-90-A4ED        TCGA-90-A4EE        TCGA-92-7340        TCGA-92-7341 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-92-8063        TCGA-92-8064        TCGA-92-8065        TCGA-94-7033 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-94-7557        TCGA-94-7943        TCGA-96-7544        TCGA-96-7545 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-96-8169        TCGA-96-8170        TCGA-96-A4JK        TCGA-96-A4JL 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-NC-A5HI 
  "8Q LOSS MUTATED" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56V        TCGA-46-3768        TCGA-46-6025 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
  "8Q LOSS MUTATED"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-5898 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-56-7730        TCGA-56-7822        TCGA-56-8503        TCGA-56-8504 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-56-8622        TCGA-56-8624        TCGA-56-8625        TCGA-56-8626 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-56-A4BY        TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-58-8386        TCGA-58-8387        TCGA-58-8388        TCGA-58-8390 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-58-8391        TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-58-A46K        TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-60-2695        TCGA-60-2696        TCGA-60-2697        TCGA-60-2698 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-60-2703        TCGA-60-2704        TCGA-60-2706        TCGA-60-2707 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-60-2708        TCGA-60-2709        TCGA-60-2710        TCGA-60-2711 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-60-2712        TCGA-60-2713        TCGA-60-2714        TCGA-60-2715 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-60-2716        TCGA-60-2719        TCGA-60-2720        TCGA-60-2721 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-60-2722        TCGA-60-2723        TCGA-60-2724        TCGA-60-2725 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-60-2726        TCGA-66-2727        TCGA-66-2734        TCGA-66-2737 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2753        TCGA-66-2754 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-66-2755        TCGA-66-2756        TCGA-66-2757        TCGA-66-2758 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-66-2759        TCGA-66-2763        TCGA-66-2765        TCGA-66-2766 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-66-2767        TCGA-66-2768        TCGA-66-2769        TCGA-66-2770 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-66-2771        TCGA-66-2773        TCGA-66-2777        TCGA-66-2778 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-66-2780        TCGA-66-2781        TCGA-66-2782        TCGA-66-2783 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-66-2785        TCGA-66-2786        TCGA-66-2787        TCGA-66-2788 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-66-2789        TCGA-66-2790        TCGA-66-2791        TCGA-66-2792 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-66-2793        TCGA-66-2794        TCGA-66-2795        TCGA-66-2800 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-68-7755        TCGA-68-7756        TCGA-68-7757        TCGA-68-8250 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-68-8251        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8007 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-77-8008        TCGA-77-8009        TCGA-77-8128        TCGA-77-8130 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-77-8131        TCGA-77-8133        TCGA-77-8136        TCGA-77-8138 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8140        TCGA-77-8143        TCGA-77-8144 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-77-8145        TCGA-77-8148        TCGA-77-8150        TCGA-77-8153 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ        TCGA-77-A5G3 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6560        TCGA-85-6561 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-7950 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-85-8048        TCGA-85-8049        TCGA-85-8052        TCGA-85-8070 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-85-8071        TCGA-85-8072        TCGA-85-8276        TCGA-85-8277 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED"   "8Q LOSS MUTATED" 
       TCGA-85-8287        TCGA-85-8288        TCGA-85-8350        TCGA-85-8351 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-85-8352        TCGA-85-8353        TCGA-85-8354        TCGA-85-8355 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-85-8479        TCGA-85-8481        TCGA-85-8580        TCGA-85-8582 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-85-8664        TCGA-85-8666        TCGA-85-A4CL        TCGA-85-A4QR 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-85-A50M        TCGA-85-A513        TCGA-85-A53L        TCGA-90-6837 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-90-A4ED        TCGA-90-A4EE        TCGA-92-7340        TCGA-92-7341 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-92-8063        TCGA-92-8064        TCGA-92-8065        TCGA-94-7033 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-94-7557        TCGA-94-7943        TCGA-96-7544        TCGA-96-7545 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-96-8169        TCGA-96-8170        TCGA-96-A4JK        TCGA-96-A4JL 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-NC-A5HI 
  "8Q LOSS MUTATED" 
[1] "hr=" "1"  
D56V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  8Q LOSS MUTATED         0        5        9        0        10         5
  8Q LOSS WILD-TYPE       1       63      124        1        40        66
                   vv
clus                STAGE IIIA STAGE IIIB STAGE IV
  8Q LOSS MUTATED            6          2        0
  8Q LOSS WILD-TYPE         48         18        5
D56V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  8Q LOSS MUTATED     9  25   3   0
  8Q LOSS WILD-TYPE  84 225  41  19
D56V4, multiclass
    clus
vv   8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  T1               9                84
  T2              25               225
  T3               3                41
  T4               0                19
                   vv
clus                 N0  N1  N2  N3
  8Q LOSS MUTATED    21  11   4   1
  8Q LOSS WILD-TYPE 232  98  30   4
D56V5, multiclass
    clus
vv   8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  N0              21               232
  N1              11                98
  N2               4                30
  N3               1                 4
                   vv
clus                 M0  M1  MX
  8Q LOSS MUTATED    31   0   6
  8Q LOSS WILD-TYPE 317   5  41
D56V6, multiclass
    clus
vv   8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  M0              31               317
  M1               0                 5
  MX               6                41
D56V7, binary
                   cls
clus                  0   1
  8Q LOSS MUTATED     7  30
  8Q LOSS WILD-TYPE  94 275
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8Q LOSS MUTATED      7   30
  8Q LOSS WILD-TYPE   94  275
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  FEMALE               7                94
  MALE                30               275
D56V8, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  8Q LOSS MUTATED                                       2
  8Q LOSS WILD-TYPE                                    10
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  8Q LOSS MUTATED                                        1
  8Q LOSS WILD-TYPE                                      5
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  8Q LOSS MUTATED                                         0
  8Q LOSS WILD-TYPE                                       1
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  8Q LOSS MUTATED                                                            34
  8Q LOSS WILD-TYPE                                                         353
D56V9, multiclass
                                                             clus
vv                                                            8Q LOSS MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     2
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                    1
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              34
                                                             clus
vv                                                            8Q LOSS WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      10
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                      5
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               353
D56V10, binary
                   cls
clus                  0   1
  8Q LOSS MUTATED     0  37
  8Q LOSS WILD-TYPE  12 357
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8Q LOSS MUTATED      0   37
  8Q LOSS WILD-TYPE   12  357
     clus
vv    8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  NO                0                12
  YES              37               357
D56V11, continuous
D56V12, continuous
                   vv
clus                 R0  R1  R2  RX
  8Q LOSS MUTATED    29   1   0   2
  8Q LOSS WILD-TYPE 301   7   4  16
D56V13, multiclass
    clus
vv   8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  R0              29               301
  R1               1                 7
  R2               0                 4
  RX               2                16

Clustering(57) Variable = 9P LOSS MUTATION ANALYSIS
D57V1, survival
                   sevent
clus2                 0   1
  9P LOSS MUTATED   153  82
  9P LOSS WILD-TYPE  86  56
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
              235               142 
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
               82                56 
$`9P LOSS MUTATED`
TCGA-18-3406 TCGA-18-3409 TCGA-18-3411 TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 
       12.16        79.46        46.52        11.34        13.02        59.51 
TCGA-18-3417 TCGA-18-3419 TCGA-18-4083 TCGA-18-4086 TCGA-18-5592 TCGA-21-1070 
       24.92         1.61         6.15         2.79         3.02       119.54 
TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 TCGA-21-1077 TCGA-21-1080 TCGA-21-1082 
       46.88        99.16        70.13        34.78       122.43       119.80 
TCGA-21-1083 TCGA-21-5783 TCGA-21-5786 TCGA-21-5787 TCGA-21-A5DI TCGA-22-1002 
        8.78        88.08        33.93        10.82        32.19         4.31 
TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 
       64.21         1.74        14.10        27.02        20.45        35.08 
TCGA-22-4594 TCGA-22-4599 TCGA-22-4601 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 
       48.33        38.17        34.75        19.30         9.53        11.77 
TCGA-22-5471 TCGA-22-5472 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5482 
       31.73        64.90        14.60        44.22         0.79        11.74 
TCGA-22-5483 TCGA-22-5485 TCGA-22-5491 TCGA-22-A5C4 TCGA-33-4538 TCGA-33-4547 
       18.84        30.08        56.32         0.95        97.94        43.10 
TCGA-33-4582 TCGA-33-6737 TCGA-33-6738 TCGA-34-2596 TCGA-34-2600 TCGA-34-2604 
      103.53        19.76        26.99         2.63        61.61        31.50 
TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 TCGA-34-5232 TCGA-34-5241 
       28.96        32.84        31.23        50.24        67.79        14.07 
TCGA-34-5927 TCGA-34-5929 TCGA-37-3789 TCGA-37-4130 TCGA-37-4135 TCGA-37-4141 
       30.94         4.96         0.43         8.09         6.81         0.39 
TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 
       47.80        74.07        44.71        60.76         1.71        24.33 
TCGA-39-5031 TCGA-39-5035 TCGA-39-5040 TCGA-43-2576 TCGA-43-3394 TCGA-43-3920 
       27.35        15.58        17.06        40.21        27.02        33.07 
TCGA-43-5668 TCGA-43-5670 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-43-7656 
       11.47        18.05        24.89        10.19         5.42         6.97 
TCGA-43-7657 TCGA-43-8115 TCGA-43-8116 TCGA-43-8118 TCGA-43-A474 TCGA-43-A56V 
        1.58         6.64         6.35         2.93        11.61         5.06 
TCGA-46-3768 TCGA-46-6026 TCGA-51-4081 TCGA-52-7809 TCGA-52-7810 TCGA-56-1622 
        9.96        13.87        29.95         5.42        30.31        28.93 
TCGA-56-5897 TCGA-56-5898 TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 
        0.10        18.25         2.04         1.02         0.99         0.43 
TCGA-56-7223 TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 TCGA-56-7730 TCGA-56-7822 
        0.99         1.45         1.32         0.85         0.20         0.03 
TCGA-56-8503 TCGA-56-8622 TCGA-56-8624 TCGA-56-8625 TCGA-56-8626 TCGA-56-8628 
        1.35         1.78         1.18         2.07         0.56         0.53 
TCGA-56-8629 TCGA-56-A49D TCGA-56-A4BX TCGA-56-A4ZJ TCGA-56-A5DS TCGA-58-8387 
        1.12         0.99         1.51         1.02         0.26        13.25 
TCGA-58-8390 TCGA-58-8391 TCGA-58-8392 TCGA-58-8393 TCGA-58-A46J TCGA-58-A46L 
       29.95        71.24        16.47        34.78        64.87        36.59 
TCGA-60-2696 TCGA-60-2698 TCGA-60-2703 TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 
        3.58        10.22        96.82        92.71        21.70        80.42 
TCGA-60-2711 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2723 TCGA-60-2724 
       41.39        42.61         3.16        32.28        35.90        23.57 
TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 
       26.79        11.77        16.96        43.10         2.01        21.07 
TCGA-66-2753 TCGA-66-2755 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 
        1.02         0.92        25.02         0.99         2.01         1.02 
TCGA-66-2768 TCGA-66-2769 TCGA-66-2771 TCGA-66-2773 TCGA-66-2778 TCGA-66-2780 
        2.01         7.07        19.00         3.02        19.00        12.03 
TCGA-66-2781 TCGA-66-2782 TCGA-66-2785 TCGA-66-2786 TCGA-66-2788 TCGA-66-2789 
        3.98        12.00         1.94        25.97        22.98         4.04 
TCGA-66-2790 TCGA-66-2793 TCGA-68-7757 TCGA-68-8251 TCGA-77-6843 TCGA-77-6844 
       22.98        10.06         6.94         3.12        73.08        75.09 
TCGA-77-6845 TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 
       23.28         0.49        42.25        70.09       106.95         0.16 
TCGA-77-7463 TCGA-77-7465 TCGA-77-8008 TCGA-77-8009 TCGA-77-8128 TCGA-77-8130 
       46.78        15.75        86.76        53.95        37.81        82.92 
TCGA-77-8138 TCGA-77-8140 TCGA-77-8143 TCGA-77-8144 TCGA-77-8145 TCGA-77-8148 
       17.69        11.54        26.40        27.39         6.97         9.63 
TCGA-77-8153 TCGA-77-8154 TCGA-77-A5GH TCGA-85-6560 TCGA-85-7696 TCGA-85-7697 
       55.33        35.90        23.44         0.36         0.59         0.33 
TCGA-85-7699 TCGA-85-7843 TCGA-85-7844 TCGA-85-7950 TCGA-85-8048 TCGA-85-8287 
        0.03         1.15         1.25         1.97         0.85         1.45 
TCGA-85-8288 TCGA-85-8350 TCGA-85-8351 TCGA-85-8352 TCGA-85-8479 TCGA-85-8580 
        1.78         1.97         1.81         2.20         0.72        14.60 
TCGA-85-8664 TCGA-85-8666 TCGA-85-A4CL TCGA-85-A4QR TCGA-85-A50M TCGA-85-A513 
        0.10        15.58         0.46         0.82         0.62         0.79 
TCGA-85-A53L TCGA-90-7766 TCGA-90-7767 TCGA-90-7964 TCGA-90-A4EE TCGA-92-7340 
        0.43         9.50         2.93        14.07        10.88         2.70 
TCGA-92-7341 TCGA-92-8063 TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 TCGA-94-7943 
        3.48         4.01         2.27         2.86         0.16        11.70 
TCGA-96-7545 TCGA-96-8169 TCGA-96-8170 TCGA-96-A4JK TCGA-96-A4JL TCGA-98-8020 
       44.15         6.18         6.90         8.98         6.02         2.73 
TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 TCGA-L3-A524 TCGA-MF-A522 TCGA-NC-A5HG 
       13.58         7.33        10.13        14.76         3.02        50.86 
TCGA-NC-A5HI 
       37.32 

$`9P LOSS WILD-TYPE`
TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3416 TCGA-18-3421 TCGA-18-4721 
        4.47        81.07         4.80        28.34        43.76        90.51 
TCGA-18-5595 TCGA-21-1076 TCGA-21-1078 TCGA-21-1079 TCGA-21-1081 TCGA-21-5782 
       27.16        60.89        15.55        31.69         9.30        31.63 
TCGA-21-5784 TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1017 TCGA-22-4595 
       41.69        19.99         7.33        14.93        48.82        24.13 
TCGA-22-4596 TCGA-22-4604 TCGA-22-4605 TCGA-22-5473 TCGA-22-5479 TCGA-22-5480 
        0.56        13.12        32.02        63.52        54.28        71.34 
TCGA-22-5481 TCGA-22-5489 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4566 
       79.20        62.86        16.60         7.63       114.05       173.79 
TCGA-33-4583 TCGA-33-4586 TCGA-33-4587 TCGA-33-4589 TCGA-34-5234 TCGA-34-5236 
      141.34        14.07        54.44        10.98        56.38         9.04 
TCGA-34-5239 TCGA-34-5240 TCGA-34-5928 TCGA-34-7107 TCGA-37-3783 TCGA-37-3792 
       23.24        12.00        18.12         1.08         3.95         0.39 
TCGA-37-4129 TCGA-37-4132 TCGA-37-4133 TCGA-37-5819 TCGA-39-5021 TCGA-39-5022 
        6.54         7.46         7.82         3.39        68.58        55.17 
TCGA-39-5024 TCGA-39-5030 TCGA-39-5034 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 
       70.03         1.94        36.39        35.64        35.70        17.88 
TCGA-43-2578 TCGA-43-2581 TCGA-43-6143 TCGA-43-6773 TCGA-43-7658 TCGA-43-A475 
       22.49        38.66        12.36         3.78        66.51         9.73 
TCGA-46-6025 TCGA-51-4079 TCGA-51-4080 TCGA-52-7622 TCGA-52-7811 TCGA-52-7812 
       10.65         0.39         0.39        17.79         8.75        27.45 
TCGA-56-8504 TCGA-56-A4BY TCGA-56-A4ZK TCGA-58-8386 TCGA-58-8388 TCGA-58-A46K 
        5.82         0.99         0.13         0.03        12.43        34.36 
TCGA-58-A46M TCGA-58-A46N TCGA-60-2695 TCGA-60-2697 TCGA-60-2704 TCGA-60-2709 
       23.24        17.72        21.07        12.23        37.94        49.48 
TCGA-60-2710 TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 
       66.51         9.01        56.91        50.33        35.34        48.49 
TCGA-60-2722 TCGA-66-2744 TCGA-66-2754 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 
       29.85         0.99         2.01         0.99         0.99        20.98 
TCGA-66-2767 TCGA-66-2770 TCGA-66-2777 TCGA-66-2783 TCGA-66-2787 TCGA-66-2791 
        2.01        23.01         2.01        24.95        40.01         5.03 
TCGA-66-2792 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 
       30.02        54.08         4.01        49.05         2.73         6.64 
TCGA-68-8250 TCGA-77-6842 TCGA-77-7138 TCGA-77-7139 TCGA-77-7140 TCGA-77-8007 
        8.02        29.56        11.18        89.95        20.78         6.51 
TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 TCGA-77-8139 TCGA-77-8150 TCGA-77-8156 
       12.59        53.92        39.09       104.09        54.41         0.33 
TCGA-77-A5FZ TCGA-77-A5G3 TCGA-77-A5GB TCGA-85-6561 TCGA-85-6798 TCGA-85-7698 
      126.18       117.57        30.81         0.79         1.12         1.61 
TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 TCGA-85-8276 
        1.97         0.53        16.77        14.07         1.18         0.43 
TCGA-85-8277 TCGA-85-8353 TCGA-85-8354 TCGA-85-8355 TCGA-85-8481 TCGA-85-8582 
        0.36         1.78         2.01         0.66         0.66        13.91 
TCGA-90-6837 TCGA-90-7769 TCGA-90-A4ED TCGA-92-8064 TCGA-96-7544 TCGA-98-7454 
       24.89        11.77         8.02         5.26        39.88         8.42 
TCGA-J1-A4AH TCGA-L3-A4E7 TCGA-LA-A446 TCGA-NC-A5HE 
        7.30         1.15         1.18        56.61 

  9P LOSS MUTATED 9P LOSS WILD-TYPE 
             0.03              0.03 
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
           122.43            173.79 
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
           12.000            16.075 
[1] "0.0 - 122.4 (12.0)" "0.0 - 173.8 (16.1)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-43-A475        TCGA-43-A56V        TCGA-46-3768        TCGA-46-6025 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-5898 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-56-7730        TCGA-56-7822        TCGA-56-8503        TCGA-56-8504 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-56-8622        TCGA-56-8624        TCGA-56-8625        TCGA-56-8626 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-56-A4BY        TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-58-8386        TCGA-58-8387        TCGA-58-8388        TCGA-58-8390 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-58-8391        TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-58-A46K        TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-60-2695        TCGA-60-2696        TCGA-60-2697        TCGA-60-2698 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-60-2703        TCGA-60-2704        TCGA-60-2706        TCGA-60-2707 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-60-2708        TCGA-60-2709        TCGA-60-2710        TCGA-60-2711 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-60-2712        TCGA-60-2713        TCGA-60-2714        TCGA-60-2715 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-60-2716        TCGA-60-2719        TCGA-60-2720        TCGA-60-2721 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-60-2722        TCGA-60-2723        TCGA-60-2724        TCGA-60-2725 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-60-2726        TCGA-66-2727        TCGA-66-2734        TCGA-66-2737 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2753        TCGA-66-2754 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-66-2755        TCGA-66-2756        TCGA-66-2757        TCGA-66-2758 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-66-2759        TCGA-66-2763        TCGA-66-2765        TCGA-66-2766 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-66-2767        TCGA-66-2768        TCGA-66-2769        TCGA-66-2770 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-66-2771        TCGA-66-2773        TCGA-66-2777        TCGA-66-2778 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-66-2780        TCGA-66-2781        TCGA-66-2782        TCGA-66-2783 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-66-2785        TCGA-66-2786        TCGA-66-2787        TCGA-66-2788 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-66-2789        TCGA-66-2790        TCGA-66-2791        TCGA-66-2792 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-66-2793        TCGA-66-2794        TCGA-66-2795        TCGA-66-2800 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-68-7755        TCGA-68-7756        TCGA-68-7757        TCGA-68-8250 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-68-8251        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8007 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-77-8008        TCGA-77-8009        TCGA-77-8128        TCGA-77-8130 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-77-8131        TCGA-77-8133        TCGA-77-8136        TCGA-77-8138 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-77-8139        TCGA-77-8140        TCGA-77-8143        TCGA-77-8144 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-77-8145        TCGA-77-8148        TCGA-77-8150        TCGA-77-8153 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ        TCGA-77-A5G3 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6560        TCGA-85-6561 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-7950 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-85-8048        TCGA-85-8049        TCGA-85-8052        TCGA-85-8070 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-85-8071        TCGA-85-8072        TCGA-85-8276        TCGA-85-8277 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-85-8287        TCGA-85-8288        TCGA-85-8350        TCGA-85-8351 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-85-8352        TCGA-85-8353        TCGA-85-8354        TCGA-85-8355 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-85-8479        TCGA-85-8481        TCGA-85-8580        TCGA-85-8582 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-85-8664        TCGA-85-8666        TCGA-85-A4CL        TCGA-85-A4QR 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-85-A50M        TCGA-85-A513        TCGA-85-A53L        TCGA-90-6837 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-90-A4ED        TCGA-90-A4EE        TCGA-92-7340        TCGA-92-7341 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-92-8063        TCGA-92-8064        TCGA-92-8065        TCGA-94-7033 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-94-7557        TCGA-94-7943        TCGA-96-7544        TCGA-96-7545 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-96-8169        TCGA-96-8170        TCGA-96-A4JK        TCGA-96-A4JL 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-NC-A5HI 
  "9P LOSS MUTATED" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-43-A475        TCGA-43-A56V        TCGA-46-3768        TCGA-46-6025 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
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"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-56-7730        TCGA-56-7822        TCGA-56-8503        TCGA-56-8504 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-56-8622        TCGA-56-8624        TCGA-56-8625        TCGA-56-8626 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-56-A4BY        TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-58-8386        TCGA-58-8387        TCGA-58-8388        TCGA-58-8390 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-58-8391        TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-58-A46K        TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
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"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-60-2703        TCGA-60-2704        TCGA-60-2706        TCGA-60-2707 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-60-2708        TCGA-60-2709        TCGA-60-2710        TCGA-60-2711 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-60-2712        TCGA-60-2713        TCGA-60-2714        TCGA-60-2715 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-60-2716        TCGA-60-2719        TCGA-60-2720        TCGA-60-2721 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-60-2722        TCGA-60-2723        TCGA-60-2724        TCGA-60-2725 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-60-2726        TCGA-66-2727        TCGA-66-2734        TCGA-66-2737 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2753        TCGA-66-2754 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-66-2755        TCGA-66-2756        TCGA-66-2757        TCGA-66-2758 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-66-2759        TCGA-66-2763        TCGA-66-2765        TCGA-66-2766 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-66-2767        TCGA-66-2768        TCGA-66-2769        TCGA-66-2770 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-66-2771        TCGA-66-2773        TCGA-66-2777        TCGA-66-2778 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-66-2780        TCGA-66-2781        TCGA-66-2782        TCGA-66-2783 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-66-2785        TCGA-66-2786        TCGA-66-2787        TCGA-66-2788 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-66-2789        TCGA-66-2790        TCGA-66-2791        TCGA-66-2792 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-66-2793        TCGA-66-2794        TCGA-66-2795        TCGA-66-2800 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-68-7755        TCGA-68-7756        TCGA-68-7757        TCGA-68-8250 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
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  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8007 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-77-8008        TCGA-77-8009        TCGA-77-8128        TCGA-77-8130 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-77-8131        TCGA-77-8133        TCGA-77-8136        TCGA-77-8138 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-77-8139        TCGA-77-8140        TCGA-77-8143        TCGA-77-8144 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-77-8145        TCGA-77-8148        TCGA-77-8150        TCGA-77-8153 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ        TCGA-77-A5G3 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6560        TCGA-85-6561 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-7950 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-85-8048        TCGA-85-8049        TCGA-85-8052        TCGA-85-8070 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-85-8071        TCGA-85-8072        TCGA-85-8276        TCGA-85-8277 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-85-8287        TCGA-85-8288        TCGA-85-8350        TCGA-85-8351 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-85-8352        TCGA-85-8353        TCGA-85-8354        TCGA-85-8355 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-85-8479        TCGA-85-8481        TCGA-85-8580        TCGA-85-8582 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-85-8664        TCGA-85-8666        TCGA-85-A4CL        TCGA-85-A4QR 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-85-A50M        TCGA-85-A513        TCGA-85-A53L        TCGA-90-6837 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-90-A4ED        TCGA-90-A4EE        TCGA-92-7340        TCGA-92-7341 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-92-8063        TCGA-92-8064        TCGA-92-8065        TCGA-94-7033 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-94-7557        TCGA-94-7943        TCGA-96-7544        TCGA-96-7545 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-96-8169        TCGA-96-8170        TCGA-96-A4JK        TCGA-96-A4JL 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-NC-A5HI 
  "9P LOSS MUTATED" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
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"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
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"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
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"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
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  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
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"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-43-A475        TCGA-43-A56V        TCGA-46-3768        TCGA-46-6025 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-5898 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-56-7730        TCGA-56-7822        TCGA-56-8503        TCGA-56-8504 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-56-8622        TCGA-56-8624        TCGA-56-8625        TCGA-56-8626 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-56-A4BY        TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-58-8386        TCGA-58-8387        TCGA-58-8388        TCGA-58-8390 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-58-8391        TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-58-A46K        TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-60-2695        TCGA-60-2696        TCGA-60-2697        TCGA-60-2698 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-60-2703        TCGA-60-2704        TCGA-60-2706        TCGA-60-2707 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-60-2708        TCGA-60-2709        TCGA-60-2710        TCGA-60-2711 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-60-2712        TCGA-60-2713        TCGA-60-2714        TCGA-60-2715 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-60-2716        TCGA-60-2719        TCGA-60-2720        TCGA-60-2721 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-60-2722        TCGA-60-2723        TCGA-60-2724        TCGA-60-2725 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-60-2726        TCGA-66-2727        TCGA-66-2734        TCGA-66-2737 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2753        TCGA-66-2754 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-66-2755        TCGA-66-2756        TCGA-66-2757        TCGA-66-2758 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-66-2759        TCGA-66-2763        TCGA-66-2765        TCGA-66-2766 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-66-2767        TCGA-66-2768        TCGA-66-2769        TCGA-66-2770 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-66-2771        TCGA-66-2773        TCGA-66-2777        TCGA-66-2778 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-66-2780        TCGA-66-2781        TCGA-66-2782        TCGA-66-2783 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-66-2785        TCGA-66-2786        TCGA-66-2787        TCGA-66-2788 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-66-2789        TCGA-66-2790        TCGA-66-2791        TCGA-66-2792 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-66-2793        TCGA-66-2794        TCGA-66-2795        TCGA-66-2800 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-68-7755        TCGA-68-7756        TCGA-68-7757        TCGA-68-8250 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-68-8251        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8007 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-77-8008        TCGA-77-8009        TCGA-77-8128        TCGA-77-8130 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-77-8131        TCGA-77-8133        TCGA-77-8136        TCGA-77-8138 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-77-8139        TCGA-77-8140        TCGA-77-8143        TCGA-77-8144 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-77-8145        TCGA-77-8148        TCGA-77-8150        TCGA-77-8153 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ        TCGA-77-A5G3 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6560        TCGA-85-6561 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-7950 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-85-8048        TCGA-85-8049        TCGA-85-8052        TCGA-85-8070 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-85-8071        TCGA-85-8072        TCGA-85-8276        TCGA-85-8277 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-85-8287        TCGA-85-8288        TCGA-85-8350        TCGA-85-8351 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-85-8352        TCGA-85-8353        TCGA-85-8354        TCGA-85-8355 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-85-8479        TCGA-85-8481        TCGA-85-8580        TCGA-85-8582 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-85-8664        TCGA-85-8666        TCGA-85-A4CL        TCGA-85-A4QR 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-85-A50M        TCGA-85-A513        TCGA-85-A53L        TCGA-90-6837 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-90-A4ED        TCGA-90-A4EE        TCGA-92-7340        TCGA-92-7341 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-92-8063        TCGA-92-8064        TCGA-92-8065        TCGA-94-7033 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-94-7557        TCGA-94-7943        TCGA-96-7544        TCGA-96-7545 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-96-8169        TCGA-96-8170        TCGA-96-A4JK        TCGA-96-A4JL 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-NC-A5HI 
  "9P LOSS MUTATED" 
[1] "hr=" "1.1"
D57V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  9P LOSS MUTATED         1       48       82        0        35        39
  9P LOSS WILD-TYPE       0       20       51        1        15        32
                   vv
clus                STAGE IIIA STAGE IIIB STAGE IV
  9P LOSS MUTATED           36          8        3
  9P LOSS WILD-TYPE         18         12        2
D57V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  9P LOSS MUTATED    63 158  24  10
  9P LOSS WILD-TYPE  30  92  20   9
D57V4, multiclass
    clus
vv   9P LOSS MUTATED 9P LOSS WILD-TYPE
  T1              63                30
  T2             158                92
  T3              24                20
  T4              10                 9
                   vv
clus                 N0  N1  N2  N3
  9P LOSS MUTATED   164  65  22   2
  9P LOSS WILD-TYPE  89  44  12   3
D57V5, multiclass
    clus
vv   9P LOSS MUTATED 9P LOSS WILD-TYPE
  N0             164                89
  N1              65                44
  N2              22                12
  N3               2                 3
                   vv
clus                 M0  M1  MX
  9P LOSS MUTATED   217   3  32
  9P LOSS WILD-TYPE 131   2  15
D57V6, multiclass
    clus
vv   9P LOSS MUTATED 9P LOSS WILD-TYPE
  M0             217               131
  M1               3                 2
  MX              32                15
D57V7, binary
                   cls
clus                  0   1
  9P LOSS MUTATED    65 190
  9P LOSS WILD-TYPE  36 115
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9P LOSS MUTATED     65  190
  9P LOSS WILD-TYPE   36  115
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  FEMALE              65                36
  MALE               190               115
D57V8, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  9P LOSS MUTATED                                       5
  9P LOSS WILD-TYPE                                     7
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  9P LOSS MUTATED                                        2
  9P LOSS WILD-TYPE                                      4
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  9P LOSS MUTATED                                         0
  9P LOSS WILD-TYPE                                       1
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  9P LOSS MUTATED                                                           248
  9P LOSS WILD-TYPE                                                         139
D57V9, multiclass
                                                             clus
vv                                                            9P LOSS MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     5
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                    2
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             248
                                                             clus
vv                                                            9P LOSS WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       7
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                      4
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               139
D57V10, binary
                   cls
clus                  0   1
  9P LOSS MUTATED     8 247
  9P LOSS WILD-TYPE   4 147
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9P LOSS MUTATED      8  247
  9P LOSS WILD-TYPE    4  147
     clus
vv    9P LOSS MUTATED 9P LOSS WILD-TYPE
  NO                8                 4
  YES             247               147
D57V11, continuous
D57V12, continuous
                   vv
clus                 R0  R1  R2  RX
  9P LOSS MUTATED   204   5   3  12
  9P LOSS WILD-TYPE 126   3   1   6
D57V13, multiclass
    clus
vv   9P LOSS MUTATED 9P LOSS WILD-TYPE
  R0             204               126
  R1               5                 3
  R2               3                 1
  RX              12                 6

Clustering(58) Variable = 9Q LOSS MUTATION ANALYSIS
D58V1, survival
                   sevent
clus2                 0   1
  9Q LOSS MUTATED   121  60
  9Q LOSS WILD-TYPE 118  78
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
              181               196 
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
               60                78 
$`9Q LOSS MUTATED`
TCGA-18-3406 TCGA-18-3409 TCGA-18-3414 TCGA-18-3417 TCGA-18-3419 TCGA-18-4083 
       12.16        79.46        13.02        24.92         1.61         6.15 
TCGA-21-1070 TCGA-21-1075 TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 TCGA-21-5786 
      119.54        70.13       119.80         8.78        31.63        33.93 
TCGA-21-5787 TCGA-21-A5DI TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 
       10.82        32.19         4.31        64.21         1.74        14.10 
TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 TCGA-22-4593 TCGA-22-4594 TCGA-22-4607 
       27.02        48.82        20.45        35.08        48.33        19.30 
TCGA-22-5474 TCGA-22-5478 TCGA-22-5482 TCGA-22-A5C4 TCGA-33-4532 TCGA-33-4547 
       14.60         0.79        11.74         0.95         7.63        43.10 
TCGA-33-4582 TCGA-33-4587 TCGA-33-6737 TCGA-33-6738 TCGA-34-2604 TCGA-34-2608 
      103.53        54.44        19.76        26.99        31.50        32.84 
TCGA-34-2609 TCGA-34-5231 TCGA-34-5232 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 
       31.23        50.24        67.79        14.07        30.94        18.12 
TCGA-34-5929 TCGA-37-4130 TCGA-37-4135 TCGA-37-4141 TCGA-39-5011 TCGA-39-5016 
        4.96         8.09         6.81         0.39        47.80        74.07 
TCGA-39-5019 TCGA-39-5024 TCGA-39-5028 TCGA-39-5031 TCGA-39-5035 TCGA-39-5037 
       44.71        70.03         1.71        27.35        15.58        35.70 
TCGA-43-2576 TCGA-43-3920 TCGA-43-5670 TCGA-43-6647 TCGA-43-6771 TCGA-43-7656 
       40.21        33.07        18.05        24.89         5.42         6.97 
TCGA-43-7657 TCGA-43-8115 TCGA-43-8116 TCGA-43-8118 TCGA-43-A56V TCGA-46-6026 
        1.58         6.64         6.35         2.93         5.06        13.87 
TCGA-51-4081 TCGA-52-7810 TCGA-56-1622 TCGA-56-5897 TCGA-56-5898 TCGA-56-6545 
       29.95        30.31        28.93         0.10        18.25         2.04 
TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 TCGA-56-7580 
        1.02         0.99         0.43         0.99         1.45         1.32 
TCGA-56-7822 TCGA-56-8503 TCGA-56-8622 TCGA-56-8624 TCGA-56-8626 TCGA-56-8628 
        0.03         1.35         1.78         1.18         0.56         0.53 
TCGA-56-8629 TCGA-56-A49D TCGA-56-A4ZJ TCGA-56-A5DS TCGA-58-8390 TCGA-58-8392 
        1.12         0.99         1.02         0.26        29.95        16.47 
TCGA-58-8393 TCGA-58-A46J TCGA-60-2696 TCGA-60-2698 TCGA-60-2703 TCGA-60-2706 
       34.78        64.87         3.58        10.22        96.82        92.71 
TCGA-60-2708 TCGA-60-2712 TCGA-60-2714 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 
       80.42         9.01        50.33        42.61         3.16        32.28 
TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2734 TCGA-66-2737 
       35.90        23.57        26.79        11.77        43.10         2.01 
TCGA-66-2742 TCGA-66-2753 TCGA-66-2755 TCGA-66-2759 TCGA-66-2763 TCGA-66-2769 
       21.07         1.02         0.92        25.02         0.99         7.07 
TCGA-66-2771 TCGA-66-2773 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 
       19.00         3.02        19.00        12.03         3.98        12.00 
TCGA-66-2785 TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 TCGA-66-2793 TCGA-68-7757 
        1.94        22.98         4.04        22.98        10.06         6.94 
TCGA-68-8250 TCGA-68-8251 TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 
        8.02         3.12        29.56        73.08        75.09        23.28 
TCGA-77-7337 TCGA-77-7463 TCGA-77-8007 TCGA-77-8008 TCGA-77-8128 TCGA-77-8130 
      106.95        46.78         6.51        86.76        37.81        82.92 
TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 TCGA-77-8143 TCGA-77-8145 TCGA-77-8148 
       17.69       104.09        11.54        26.40         6.97         9.63 
TCGA-77-8154 TCGA-77-A5GH TCGA-85-6560 TCGA-85-7697 TCGA-85-7843 TCGA-85-8048 
       35.90        23.44         0.36         0.33         1.15         0.85 
TCGA-85-8287 TCGA-85-8288 TCGA-85-8350 TCGA-85-8351 TCGA-85-8352 TCGA-85-8664 
        1.45         1.78         1.97         1.81         2.20         0.10 
TCGA-85-8666 TCGA-85-A4QR TCGA-85-A50M TCGA-85-A513 TCGA-85-A53L TCGA-90-7766 
       15.58         0.82         0.62         0.79         0.43         9.50 
TCGA-90-7767 TCGA-90-7964 TCGA-90-A4EE TCGA-92-7340 TCGA-92-7341 TCGA-92-8065 
        2.93        14.07        10.88         2.70         3.48         2.27 
TCGA-94-7033 TCGA-94-7557 TCGA-94-7943 TCGA-96-7544 TCGA-96-8169 TCGA-96-8170 
        2.86         0.16        11.70        39.88         6.18         6.90 
TCGA-98-8020 TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 TCGA-L3-A4E7 TCGA-NC-A5HG 
        2.73        13.58         7.33        10.13         1.15        50.86 
TCGA-NC-A5HI 
       37.32 

$`9Q LOSS WILD-TYPE`
TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 TCGA-18-3415 
        4.47        81.07         4.80        46.52        11.34        59.51 
TCGA-18-3416 TCGA-18-3421 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       28.34        43.76         2.79        90.51         3.02        27.16 
TCGA-21-1071 TCGA-21-1072 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1079 
       46.88        99.16        60.89        34.78        15.55        31.69 
TCGA-21-1080 TCGA-21-1081 TCGA-21-5783 TCGA-21-5784 TCGA-22-0940 TCGA-22-0944 
      122.43         9.30        88.08        41.69        19.99         7.33 
TCGA-22-1000 TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 
       14.93        24.13         0.56        38.17        34.75        13.12 
TCGA-22-4605 TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       32.02         9.53        11.77        31.73        64.90        63.52 
TCGA-22-5477 TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 TCGA-22-5483 TCGA-22-5485 
       44.22        54.28        71.34        79.20        18.84        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4533 TCGA-33-4538 TCGA-33-4566 
       62.86        56.32        16.60       114.05        97.94       173.79 
TCGA-33-4583 TCGA-33-4586 TCGA-33-4589 TCGA-34-2596 TCGA-34-2600 TCGA-34-2605 
      141.34        14.07        10.98         2.63        61.61        28.96 
TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-7107 TCGA-37-3783 
       56.38         9.04        23.24        12.00         1.08         3.95 
TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 TCGA-37-4132 TCGA-37-4133 TCGA-37-5819 
        0.43         0.39         6.54         7.46         7.82         3.39 
TCGA-39-5021 TCGA-39-5022 TCGA-39-5027 TCGA-39-5029 TCGA-39-5030 TCGA-39-5034 
       68.58        55.17        60.76        24.33         1.94        36.39 
TCGA-39-5036 TCGA-39-5039 TCGA-39-5040 TCGA-43-2578 TCGA-43-2581 TCGA-43-3394 
       35.64        17.88        17.06        22.49        38.66        27.02 
TCGA-43-5668 TCGA-43-6143 TCGA-43-6770 TCGA-43-6773 TCGA-43-7658 TCGA-43-A474 
       11.47        12.36        10.19         3.78        66.51        11.61 
TCGA-43-A475 TCGA-46-3768 TCGA-46-6025 TCGA-51-4079 TCGA-51-4080 TCGA-52-7622 
        9.73         9.96        10.65         0.39         0.39        17.79 
TCGA-52-7809 TCGA-52-7811 TCGA-52-7812 TCGA-56-7582 TCGA-56-7730 TCGA-56-8504 
        5.42         8.75        27.45         0.85         0.20         5.82 
TCGA-56-8625 TCGA-56-A4BX TCGA-56-A4BY TCGA-56-A4ZK TCGA-58-8386 TCGA-58-8387 
        2.07         1.51         0.99         0.13         0.03        13.25 
TCGA-58-8388 TCGA-58-8391 TCGA-58-A46K TCGA-58-A46L TCGA-58-A46M TCGA-58-A46N 
       12.43        71.24        34.36        36.59        23.24        17.72 
TCGA-60-2695 TCGA-60-2697 TCGA-60-2704 TCGA-60-2707 TCGA-60-2709 TCGA-60-2710 
       21.07        12.23        37.94        21.70        49.48        66.51 
TCGA-60-2711 TCGA-60-2713 TCGA-60-2715 TCGA-60-2716 TCGA-60-2722 TCGA-66-2727 
       41.39        56.91        35.34        48.49        29.85        16.96 
TCGA-66-2744 TCGA-66-2754 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2765 
        0.99         2.01         0.99         0.99        20.98         2.01 
TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2777 TCGA-66-2783 
        1.02         2.01         2.01        23.01         2.01        24.95 
TCGA-66-2786 TCGA-66-2787 TCGA-66-2791 TCGA-66-2792 TCGA-66-2794 TCGA-66-2795 
       25.97        40.01         5.03        30.02        54.08         4.01 
TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 TCGA-77-7138 TCGA-77-7139 TCGA-77-7140 
       49.05         2.73         6.64        11.18        89.95        20.78 
TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 TCGA-77-7338 TCGA-77-7465 TCGA-77-8009 
        0.49        42.25        70.09         0.16        15.75        53.95 
TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 TCGA-77-8144 TCGA-77-8150 TCGA-77-8153 
       12.59        53.92        39.09        27.39        54.41        55.33 
TCGA-77-8156 TCGA-77-A5FZ TCGA-77-A5G3 TCGA-77-A5GB TCGA-85-6561 TCGA-85-6798 
        0.33       126.18       117.57        30.81         0.79         1.12 
TCGA-85-7696 TCGA-85-7698 TCGA-85-7699 TCGA-85-7844 TCGA-85-7950 TCGA-85-8049 
        0.59         1.61         0.03         1.25         1.97         1.97 
TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 TCGA-85-8276 TCGA-85-8277 
        0.53        16.77        14.07         1.18         0.43         0.36 
TCGA-85-8353 TCGA-85-8354 TCGA-85-8355 TCGA-85-8479 TCGA-85-8481 TCGA-85-8580 
        1.78         2.01         0.66         0.72         0.66        14.60 
TCGA-85-8582 TCGA-85-A4CL TCGA-90-6837 TCGA-90-7769 TCGA-90-A4ED TCGA-92-8063 
       13.91         0.46        24.89        11.77         8.02         4.01 
TCGA-92-8064 TCGA-96-7545 TCGA-96-A4JK TCGA-96-A4JL TCGA-98-7454 TCGA-J1-A4AH 
        5.26        44.15         8.98         6.02         8.42         7.30 
TCGA-L3-A524 TCGA-LA-A446 TCGA-MF-A522 TCGA-NC-A5HE 
       14.76         1.18         3.02        56.61 

  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
             0.03              0.03 
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
           119.80            173.79 
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
           11.770            14.845 
[1] "0.0 - 119.8 (11.8)" "0.0 - 173.8 (14.8)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56V        TCGA-46-3768        TCGA-46-6025 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-5898 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-56-7730        TCGA-56-7822        TCGA-56-8503        TCGA-56-8504 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-56-8622        TCGA-56-8624        TCGA-56-8625        TCGA-56-8626 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-56-A4BY        TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-58-8386        TCGA-58-8387        TCGA-58-8388        TCGA-58-8390 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-58-8391        TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-58-A46K        TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-60-2695        TCGA-60-2696        TCGA-60-2697        TCGA-60-2698 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-60-2703        TCGA-60-2704        TCGA-60-2706        TCGA-60-2707 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-60-2708        TCGA-60-2709        TCGA-60-2710        TCGA-60-2711 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-60-2712        TCGA-60-2713        TCGA-60-2714        TCGA-60-2715 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-60-2716        TCGA-60-2719        TCGA-60-2720        TCGA-60-2721 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-60-2722        TCGA-60-2723        TCGA-60-2724        TCGA-60-2725 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-60-2726        TCGA-66-2727        TCGA-66-2734        TCGA-66-2737 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2753        TCGA-66-2754 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-66-2755        TCGA-66-2756        TCGA-66-2757        TCGA-66-2758 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-66-2759        TCGA-66-2763        TCGA-66-2765        TCGA-66-2766 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-66-2767        TCGA-66-2768        TCGA-66-2769        TCGA-66-2770 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-66-2771        TCGA-66-2773        TCGA-66-2777        TCGA-66-2778 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-66-2780        TCGA-66-2781        TCGA-66-2782        TCGA-66-2783 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-66-2785        TCGA-66-2786        TCGA-66-2787        TCGA-66-2788 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-66-2789        TCGA-66-2790        TCGA-66-2791        TCGA-66-2792 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-66-2793        TCGA-66-2794        TCGA-66-2795        TCGA-66-2800 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-68-7755        TCGA-68-7756        TCGA-68-7757        TCGA-68-8250 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-68-8251        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8007 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-77-8008        TCGA-77-8009        TCGA-77-8128        TCGA-77-8130 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-77-8131        TCGA-77-8133        TCGA-77-8136        TCGA-77-8138 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-77-8139        TCGA-77-8140        TCGA-77-8143        TCGA-77-8144 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-77-8145        TCGA-77-8148        TCGA-77-8150        TCGA-77-8153 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ        TCGA-77-A5G3 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6560        TCGA-85-6561 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-7950 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-85-8048        TCGA-85-8049        TCGA-85-8052        TCGA-85-8070 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-85-8071        TCGA-85-8072        TCGA-85-8276        TCGA-85-8277 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-85-8287        TCGA-85-8288        TCGA-85-8350        TCGA-85-8351 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-85-8352        TCGA-85-8353        TCGA-85-8354        TCGA-85-8355 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-85-8479        TCGA-85-8481        TCGA-85-8580        TCGA-85-8582 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-85-8664        TCGA-85-8666        TCGA-85-A4CL        TCGA-85-A4QR 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-85-A50M        TCGA-85-A513        TCGA-85-A53L        TCGA-90-6837 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-90-A4ED        TCGA-90-A4EE        TCGA-92-7340        TCGA-92-7341 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-92-8063        TCGA-92-8064        TCGA-92-8065        TCGA-94-7033 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-94-7557        TCGA-94-7943        TCGA-96-7544        TCGA-96-7545 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-96-8169        TCGA-96-8170        TCGA-96-A4JK        TCGA-96-A4JL 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-NC-A5HI 
  "9Q LOSS MUTATED" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56V        TCGA-46-3768        TCGA-46-6025 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-5898 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-56-7730        TCGA-56-7822        TCGA-56-8503        TCGA-56-8504 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-56-8622        TCGA-56-8624        TCGA-56-8625        TCGA-56-8626 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-56-A4BY        TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-58-8386        TCGA-58-8387        TCGA-58-8388        TCGA-58-8390 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-58-8391        TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-58-A46K        TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-60-2695        TCGA-60-2696        TCGA-60-2697        TCGA-60-2698 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-60-2703        TCGA-60-2704        TCGA-60-2706        TCGA-60-2707 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-60-2708        TCGA-60-2709        TCGA-60-2710        TCGA-60-2711 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-60-2712        TCGA-60-2713        TCGA-60-2714        TCGA-60-2715 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-60-2716        TCGA-60-2719        TCGA-60-2720        TCGA-60-2721 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-60-2722        TCGA-60-2723        TCGA-60-2724        TCGA-60-2725 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-60-2726        TCGA-66-2727        TCGA-66-2734        TCGA-66-2737 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2753        TCGA-66-2754 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-66-2755        TCGA-66-2756        TCGA-66-2757        TCGA-66-2758 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-66-2759        TCGA-66-2763        TCGA-66-2765        TCGA-66-2766 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-66-2767        TCGA-66-2768        TCGA-66-2769        TCGA-66-2770 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-66-2771        TCGA-66-2773        TCGA-66-2777        TCGA-66-2778 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-66-2780        TCGA-66-2781        TCGA-66-2782        TCGA-66-2783 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-66-2785        TCGA-66-2786        TCGA-66-2787        TCGA-66-2788 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-66-2789        TCGA-66-2790        TCGA-66-2791        TCGA-66-2792 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-66-2793        TCGA-66-2794        TCGA-66-2795        TCGA-66-2800 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-68-7755        TCGA-68-7756        TCGA-68-7757        TCGA-68-8250 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-68-8251        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8007 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-77-8008        TCGA-77-8009        TCGA-77-8128        TCGA-77-8130 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-77-8131        TCGA-77-8133        TCGA-77-8136        TCGA-77-8138 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-77-8139        TCGA-77-8140        TCGA-77-8143        TCGA-77-8144 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-77-8145        TCGA-77-8148        TCGA-77-8150        TCGA-77-8153 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ        TCGA-77-A5G3 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6560        TCGA-85-6561 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-7950 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-85-8048        TCGA-85-8049        TCGA-85-8052        TCGA-85-8070 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-85-8071        TCGA-85-8072        TCGA-85-8276        TCGA-85-8277 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-85-8287        TCGA-85-8288        TCGA-85-8350        TCGA-85-8351 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-85-8352        TCGA-85-8353        TCGA-85-8354        TCGA-85-8355 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-85-8479        TCGA-85-8481        TCGA-85-8580        TCGA-85-8582 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-85-8664        TCGA-85-8666        TCGA-85-A4CL        TCGA-85-A4QR 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-85-A50M        TCGA-85-A513        TCGA-85-A53L        TCGA-90-6837 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-90-A4ED        TCGA-90-A4EE        TCGA-92-7340        TCGA-92-7341 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-92-8063        TCGA-92-8064        TCGA-92-8065        TCGA-94-7033 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-94-7557        TCGA-94-7943        TCGA-96-7544        TCGA-96-7545 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-96-8169        TCGA-96-8170        TCGA-96-A4JK        TCGA-96-A4JL 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-NC-A5HI 
  "9Q LOSS MUTATED" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56V        TCGA-46-3768        TCGA-46-6025 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-5898 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-56-7730        TCGA-56-7822        TCGA-56-8503        TCGA-56-8504 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-56-8622        TCGA-56-8624        TCGA-56-8625        TCGA-56-8626 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-56-A4BY        TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-58-8386        TCGA-58-8387        TCGA-58-8388        TCGA-58-8390 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-58-8391        TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-58-A46K        TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-60-2695        TCGA-60-2696        TCGA-60-2697        TCGA-60-2698 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-60-2703        TCGA-60-2704        TCGA-60-2706        TCGA-60-2707 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-60-2708        TCGA-60-2709        TCGA-60-2710        TCGA-60-2711 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-60-2712        TCGA-60-2713        TCGA-60-2714        TCGA-60-2715 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-60-2716        TCGA-60-2719        TCGA-60-2720        TCGA-60-2721 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-60-2722        TCGA-60-2723        TCGA-60-2724        TCGA-60-2725 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-60-2726        TCGA-66-2727        TCGA-66-2734        TCGA-66-2737 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2753        TCGA-66-2754 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-66-2755        TCGA-66-2756        TCGA-66-2757        TCGA-66-2758 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-66-2759        TCGA-66-2763        TCGA-66-2765        TCGA-66-2766 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-66-2767        TCGA-66-2768        TCGA-66-2769        TCGA-66-2770 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-66-2771        TCGA-66-2773        TCGA-66-2777        TCGA-66-2778 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-66-2780        TCGA-66-2781        TCGA-66-2782        TCGA-66-2783 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-66-2785        TCGA-66-2786        TCGA-66-2787        TCGA-66-2788 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-66-2789        TCGA-66-2790        TCGA-66-2791        TCGA-66-2792 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-66-2793        TCGA-66-2794        TCGA-66-2795        TCGA-66-2800 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-68-7755        TCGA-68-7756        TCGA-68-7757        TCGA-68-8250 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-68-8251        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8007 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-77-8008        TCGA-77-8009        TCGA-77-8128        TCGA-77-8130 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-77-8131        TCGA-77-8133        TCGA-77-8136        TCGA-77-8138 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-77-8139        TCGA-77-8140        TCGA-77-8143        TCGA-77-8144 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-77-8145        TCGA-77-8148        TCGA-77-8150        TCGA-77-8153 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ        TCGA-77-A5G3 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6560        TCGA-85-6561 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-7950 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-85-8048        TCGA-85-8049        TCGA-85-8052        TCGA-85-8070 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-85-8071        TCGA-85-8072        TCGA-85-8276        TCGA-85-8277 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-85-8287        TCGA-85-8288        TCGA-85-8350        TCGA-85-8351 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-85-8352        TCGA-85-8353        TCGA-85-8354        TCGA-85-8355 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-85-8479        TCGA-85-8481        TCGA-85-8580        TCGA-85-8582 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-85-8664        TCGA-85-8666        TCGA-85-A4CL        TCGA-85-A4QR 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-85-A50M        TCGA-85-A513        TCGA-85-A53L        TCGA-90-6837 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-90-A4ED        TCGA-90-A4EE        TCGA-92-7340        TCGA-92-7341 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-92-8063        TCGA-92-8064        TCGA-92-8065        TCGA-94-7033 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-94-7557        TCGA-94-7943        TCGA-96-7544        TCGA-96-7545 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-96-8169        TCGA-96-8170        TCGA-96-A4JK        TCGA-96-A4JL 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-NC-A5HI 
  "9Q LOSS MUTATED" 
[1] "hr=" "1"  
D58V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  9Q LOSS MUTATED         1       38       57        0        25        37
  9Q LOSS WILD-TYPE       0       30       76        1        25        34
                   vv
clus                STAGE IIIA STAGE IIIB STAGE IV
  9Q LOSS MUTATED           24          6        3
  9Q LOSS WILD-TYPE         30         14        2
D58V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  9Q LOSS MUTATED    49 120  20   5
  9Q LOSS WILD-TYPE  44 130  24  14
D58V4, multiclass
    clus
vv   9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  T1              49                44
  T2             120               130
  T3              20                24
  T4               5                14
                   vv
clus                 N0  N1  N2  N3
  9Q LOSS MUTATED   121  55  14   2
  9Q LOSS WILD-TYPE 132  54  20   3
D58V5, multiclass
    clus
vv   9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  N0             121               132
  N1              55                54
  N2              14                20
  N3               2                 3
                   vv
clus                 M0  M1  MX
  9Q LOSS MUTATED   160   3  29
  9Q LOSS WILD-TYPE 188   2  18
D58V6, multiclass
    clus
vv   9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  M0             160               188
  M1               3                 2
  MX              29                18
D58V7, binary
                   cls
clus                  0   1
  9Q LOSS MUTATED    50 144
  9Q LOSS WILD-TYPE  51 161
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9Q LOSS MUTATED     50  144
  9Q LOSS WILD-TYPE   51  161
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  FEMALE              50                51
  MALE               144               161
D58V8, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  9Q LOSS MUTATED                                       3
  9Q LOSS WILD-TYPE                                     9
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  9Q LOSS MUTATED                                        1
  9Q LOSS WILD-TYPE                                      5
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  9Q LOSS MUTATED                                         1
  9Q LOSS WILD-TYPE                                       0
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  9Q LOSS MUTATED                                                           189
  9Q LOSS WILD-TYPE                                                         198
D58V9, multiclass
                                                             clus
vv                                                            9Q LOSS MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     3
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                    1
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                   1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             189
                                                             clus
vv                                                            9Q LOSS WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       9
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                      5
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                     0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               198
D58V10, binary
                   cls
clus                  0   1
  9Q LOSS MUTATED     4 190
  9Q LOSS WILD-TYPE   8 204
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9Q LOSS MUTATED      4  190
  9Q LOSS WILD-TYPE    8  204
     clus
vv    9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  NO                4                 8
  YES             190               204
D58V11, continuous
D58V12, continuous
                   vv
clus                 R0  R1  R2  RX
  9Q LOSS MUTATED   154   3   2   6
  9Q LOSS WILD-TYPE 176   5   2  12
D58V13, multiclass
    clus
vv   9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  R0             154               176
  R1               3                 5
  R2               2                 2
  RX               6                12

Clustering(59) Variable = 10P LOSS MUTATION ANALYSIS
D59V1, survival
                    sevent
clus2                  0   1
  10P LOSS MUTATED   105  60
  10P LOSS WILD-TYPE 134  78
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
               165                212 
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
                60                 78 
$`10P LOSS MUTATED`
TCGA-18-3406 TCGA-18-3411 TCGA-18-3412 TCGA-18-3421 TCGA-18-4083 TCGA-18-5592 
       12.16        46.52        11.34        43.76         6.15         3.02 
TCGA-18-5595 TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 
       27.16        46.88        99.16        70.13        60.89        34.78 
TCGA-21-1079 TCGA-21-1080 TCGA-21-1082 TCGA-21-5786 TCGA-21-A5DI TCGA-22-0940 
       31.69       122.43       119.80        33.93        32.19        19.99 
TCGA-22-1000 TCGA-22-1005 TCGA-22-1011 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 
       14.93        64.21         1.74        27.02        20.45        35.08 
TCGA-22-4595 TCGA-22-4599 TCGA-22-4609 TCGA-22-4613 TCGA-22-5474 TCGA-22-5477 
       24.13        38.17         9.53        11.77        14.60        44.22 
TCGA-22-5478 TCGA-22-5479 TCGA-22-5482 TCGA-22-5483 TCGA-22-5491 TCGA-33-4533 
        0.79        54.28        11.74        18.84        56.32       114.05 
TCGA-33-4538 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-34-2596 TCGA-34-2605 
       97.94       103.53       141.34        14.07         2.63        28.96 
TCGA-34-5236 TCGA-34-5927 TCGA-37-3789 TCGA-37-3792 TCGA-37-4135 TCGA-37-5819 
        9.04        30.94         0.43         0.39         6.81         3.39 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5027 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 
       44.71        68.58        60.76        24.33         1.94        27.35 
TCGA-39-5036 TCGA-39-5039 TCGA-43-2576 TCGA-43-2578 TCGA-43-3920 TCGA-43-6143 
       35.64        17.88        40.21        22.49        33.07        12.36 
TCGA-43-6770 TCGA-43-8118 TCGA-43-A56V TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 
       10.19         2.93         5.06         0.39        29.95        17.79 
TCGA-52-7809 TCGA-52-7810 TCGA-56-1622 TCGA-56-5898 TCGA-56-7223 TCGA-56-7580 
        5.42        30.31        28.93        18.25         0.99         1.32 
TCGA-56-7582 TCGA-56-7730 TCGA-56-8503 TCGA-56-8622 TCGA-56-8626 TCGA-56-8628 
        0.85         0.20         1.35         1.78         0.56         0.53 
TCGA-56-8629 TCGA-56-A49D TCGA-56-A4BY TCGA-56-A4ZK TCGA-58-8386 TCGA-58-8391 
        1.12         0.99         0.99         0.13         0.03        71.24 
TCGA-58-8392 TCGA-58-8393 TCGA-58-A46J TCGA-58-A46K TCGA-58-A46M TCGA-60-2695 
       16.47        34.78        64.87        34.36        23.24        21.07 
TCGA-60-2703 TCGA-60-2704 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2715 
       96.82        37.94        80.42        49.48        66.51        35.34 
TCGA-60-2719 TCGA-60-2722 TCGA-60-2723 TCGA-60-2725 TCGA-66-2727 TCGA-66-2737 
       42.61        29.85        35.90        26.79        16.96         2.01 
TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 
        1.02         2.01         0.92         0.99        20.98        25.02 
TCGA-66-2770 TCGA-66-2777 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 
       23.01         2.01        25.97        40.01        22.98         4.04 
TCGA-66-2791 TCGA-66-2793 TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 TCGA-68-8250 
        5.03        10.06        49.05         2.73         6.64         8.02 
TCGA-68-8251 TCGA-77-6842 TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 TCGA-77-7465 
        3.12        29.56        23.28        11.18        89.95        15.75 
TCGA-77-8009 TCGA-77-8130 TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 
       53.95        82.92        53.92        39.09        17.69       104.09 
TCGA-77-8140 TCGA-77-8144 TCGA-77-8153 TCGA-77-8156 TCGA-77-A5GB TCGA-85-6798 
       11.54        27.39        55.33         0.33        30.81         1.12 
TCGA-85-7696 TCGA-85-7699 TCGA-85-7844 TCGA-85-7950 TCGA-85-8052 TCGA-85-8070 
        0.59         0.03         1.25         1.97         0.53        16.77 
TCGA-85-8071 TCGA-85-8277 TCGA-85-8351 TCGA-85-8353 TCGA-85-8354 TCGA-85-8479 
       14.07         0.36         1.81         1.78         2.01         0.72 
TCGA-85-8580 TCGA-85-A4QR TCGA-90-A4EE TCGA-92-8064 TCGA-94-7033 TCGA-94-7557 
       14.60         0.82        10.88         5.26         2.86         0.16 
TCGA-96-8170 TCGA-96-A4JK TCGA-98-8020 TCGA-98-8021 TCGA-98-8023 TCGA-J1-A4AH 
        6.90         8.98         2.73        13.58        10.13         7.30 
TCGA-L3-A524 TCGA-LA-A446 TCGA-MF-A522 
       14.76         1.18         3.02 

$`10P LOSS WILD-TYPE`
TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3414 TCGA-18-3415 
        4.47        81.07        79.46         4.80        13.02        59.51 
TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-4086 TCGA-18-4721 TCGA-21-1070 
       28.34        24.92         1.61         2.79        90.51       119.54 
TCGA-21-1078 TCGA-21-1081 TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 
       15.55         9.30         8.78        31.63        88.08        41.69 
TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1012 TCGA-22-1017 TCGA-22-4594 
       10.82         7.33         4.31        14.10        48.82        48.33 
TCGA-22-4596 TCGA-22-4601 TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 TCGA-22-5471 
        0.56        34.75        13.12        32.02        19.30        31.73 
TCGA-22-5472 TCGA-22-5473 TCGA-22-5480 TCGA-22-5481 TCGA-22-5485 TCGA-22-5489 
       64.90        63.52        71.34        79.20        30.08        62.86 
TCGA-22-5492 TCGA-22-A5C4 TCGA-33-4532 TCGA-33-4547 TCGA-33-4566 TCGA-33-4587 
       16.60         0.95         7.63        43.10       173.79        54.44 
TCGA-33-4589 TCGA-33-6737 TCGA-33-6738 TCGA-34-2600 TCGA-34-2604 TCGA-34-2608 
       10.98        19.76        26.99        61.61        31.50        32.84 
TCGA-34-2609 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5239 TCGA-34-5240 
       31.23        50.24        67.79        56.38        23.24        12.00 
TCGA-34-5241 TCGA-34-5928 TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 TCGA-37-4129 
       14.07        18.12         4.96         1.08         3.95         6.54 
TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 TCGA-37-4141 TCGA-39-5011 TCGA-39-5016 
        8.09         7.46         7.82         0.39        47.80        74.07 
TCGA-39-5022 TCGA-39-5024 TCGA-39-5028 TCGA-39-5034 TCGA-39-5035 TCGA-39-5037 
       55.17        70.03         1.71        36.39        15.58        35.70 
TCGA-39-5040 TCGA-43-2581 TCGA-43-3394 TCGA-43-5668 TCGA-43-5670 TCGA-43-6647 
       17.06        38.66        27.02        11.47        18.05        24.89 
TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 
        5.42         3.78         6.97         1.58        66.51         6.64 
TCGA-43-8116 TCGA-43-A474 TCGA-43-A475 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 
        6.35        11.61         9.73         9.96        10.65        13.87 
TCGA-51-4079 TCGA-52-7811 TCGA-52-7812 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 
        0.39         8.75        27.45         0.10         2.04         1.02 
TCGA-56-7221 TCGA-56-7222 TCGA-56-7579 TCGA-56-7822 TCGA-56-8504 TCGA-56-8624 
        0.99         0.43         1.45         0.03         5.82         1.18 
TCGA-56-8625 TCGA-56-A4BX TCGA-56-A4ZJ TCGA-56-A5DS TCGA-58-8387 TCGA-58-8388 
        2.07         1.51         1.02         0.26        13.25        12.43 
TCGA-58-8390 TCGA-58-A46L TCGA-58-A46N TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 
       29.95        36.59        17.72         3.58        12.23        10.22 
TCGA-60-2706 TCGA-60-2707 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 
       92.71        21.70        41.39         9.01        56.91        50.33 
TCGA-60-2716 TCGA-60-2720 TCGA-60-2721 TCGA-60-2724 TCGA-60-2726 TCGA-66-2734 
       48.49         3.16        32.28        23.57        11.77        43.10 
TCGA-66-2742 TCGA-66-2744 TCGA-66-2756 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 
       21.07         0.99         0.99         0.99         2.01         1.02 
TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 TCGA-66-2771 TCGA-66-2773 TCGA-66-2778 
        2.01         2.01         7.07        19.00         3.02        19.00 
TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2790 
       12.03         3.98        12.00        24.95         1.94        22.98 
TCGA-66-2792 TCGA-66-2794 TCGA-66-2795 TCGA-68-7757 TCGA-77-6843 TCGA-77-6844 
       30.02        54.08         4.01         6.94        73.08        75.09 
TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 
       20.78         0.49        42.25        70.09       106.95         0.16 
TCGA-77-7463 TCGA-77-8007 TCGA-77-8008 TCGA-77-8128 TCGA-77-8131 TCGA-77-8143 
       46.78         6.51        86.76        37.81        12.59        26.40 
TCGA-77-8145 TCGA-77-8148 TCGA-77-8150 TCGA-77-8154 TCGA-77-A5FZ TCGA-77-A5G3 
        6.97         9.63        54.41        35.90       126.18       117.57 
TCGA-77-A5GH TCGA-85-6560 TCGA-85-6561 TCGA-85-7697 TCGA-85-7698 TCGA-85-7843 
       23.44         0.36         0.79         0.33         1.61         1.15 
TCGA-85-8048 TCGA-85-8049 TCGA-85-8072 TCGA-85-8276 TCGA-85-8287 TCGA-85-8288 
        0.85         1.97         1.18         0.43         1.45         1.78 
TCGA-85-8350 TCGA-85-8352 TCGA-85-8355 TCGA-85-8481 TCGA-85-8582 TCGA-85-8664 
        1.97         2.20         0.66         0.66        13.91         0.10 
TCGA-85-8666 TCGA-85-A4CL TCGA-85-A50M TCGA-85-A513 TCGA-85-A53L TCGA-90-6837 
       15.58         0.46         0.62         0.79         0.43        24.89 
TCGA-90-7766 TCGA-90-7767 TCGA-90-7769 TCGA-90-7964 TCGA-90-A4ED TCGA-92-7340 
        9.50         2.93        11.77        14.07         8.02         2.70 
TCGA-92-7341 TCGA-92-8063 TCGA-92-8065 TCGA-94-7943 TCGA-96-7544 TCGA-96-7545 
        3.48         4.01         2.27        11.70        39.88        44.15 
TCGA-96-8169 TCGA-96-A4JL TCGA-98-7454 TCGA-98-8022 TCGA-L3-A4E7 TCGA-NC-A5HE 
        6.18         6.02         8.42         7.33         1.15        56.61 
TCGA-NC-A5HG TCGA-NC-A5HI 
       50.86        37.32 

  10P LOSS MUTATED 10P LOSS WILD-TYPE 
              0.03               0.03 
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
            141.34             173.79 
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
             16.47              12.00 
[1] "0.0 - 141.3 (16.5)" "0.0 - 173.8 (12.0)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-22-A5C4         TCGA-33-4532         TCGA-33-4533 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-33-4538         TCGA-33-4547         TCGA-33-4566 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-33-4582         TCGA-33-4583         TCGA-33-4586 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-33-4587         TCGA-33-4589         TCGA-33-6737 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-33-6738         TCGA-34-2596         TCGA-34-2600 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-34-2604         TCGA-34-2605         TCGA-34-2608 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-34-2609         TCGA-34-5231         TCGA-34-5232 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-34-5234         TCGA-34-5236         TCGA-34-5239 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-34-5240         TCGA-34-5241         TCGA-34-5927 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-34-5928         TCGA-34-5929         TCGA-34-7107 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-3792 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4132 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-37-4133         TCGA-37-4135         TCGA-37-4141 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-37-5819         TCGA-39-5011         TCGA-39-5016 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-39-5019         TCGA-39-5021         TCGA-39-5022 
  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-39-5024         TCGA-39-5027         TCGA-39-5028 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-39-5029         TCGA-39-5030         TCGA-39-5031 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-39-5034         TCGA-39-5035         TCGA-39-5036 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-39-5037         TCGA-39-5039         TCGA-39-5040 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-43-8118 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-43-A474         TCGA-43-A475         TCGA-43-A56V 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-46-3768         TCGA-46-6025         TCGA-46-6026 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-51-4079         TCGA-51-4080         TCGA-51-4081 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-52-7622         TCGA-52-7809         TCGA-52-7810 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-52-7811         TCGA-52-7812         TCGA-56-1622 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-56-5897         TCGA-56-5898         TCGA-56-6545 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-56-6546         TCGA-56-7221         TCGA-56-7222 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-56-7223         TCGA-56-7579         TCGA-56-7580 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-56-7582         TCGA-56-7730         TCGA-56-7822 
  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-56-8503         TCGA-56-8504         TCGA-56-8622 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-56-8624         TCGA-56-8625         TCGA-56-8626 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-56-8628         TCGA-56-8629         TCGA-56-A49D 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-56-A4BX         TCGA-56-A4BY         TCGA-56-A4ZJ 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-56-A4ZK         TCGA-56-A5DS         TCGA-58-8386 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-58-8387         TCGA-58-8388         TCGA-58-8390 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-58-8391         TCGA-58-8392         TCGA-58-8393 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-58-A46J         TCGA-58-A46K         TCGA-58-A46L 
  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-58-A46M         TCGA-58-A46N         TCGA-60-2695 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
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  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
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  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
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  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
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  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
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  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
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"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
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"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
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  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
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  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
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"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
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"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
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  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
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"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-96-8169         TCGA-96-8170         TCGA-96-A4JK 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-96-A4JL         TCGA-98-7454         TCGA-98-8020 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-LA-A446         TCGA-MF-A522         TCGA-NC-A5HE 
  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D59V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  10P LOSS MUTATED         1       28       67        0        17        28
  10P LOSS WILD-TYPE       0       40       66        1        33        43
                    vv
clus                 STAGE IIIA STAGE IIIB STAGE IV
  10P LOSS MUTATED           25          8        1
  10P LOSS WILD-TYPE         29         12        4
D59V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  10P LOSS MUTATED    39 110  19   7
  10P LOSS WILD-TYPE  54 140  25  12
D59V4, multiclass
    clus
vv   10P LOSS MUTATED 10P LOSS WILD-TYPE
  T1               39                 54
  T2              110                140
  T3               19                 25
  T4                7                 12
                    vv
clus                  N0  N1  N2  N3
  10P LOSS MUTATED   114  41  16   2
  10P LOSS WILD-TYPE 139  68  18   3
D59V5, multiclass
    clus
vv   10P LOSS MUTATED 10P LOSS WILD-TYPE
  N0              114                139
  N1               41                 68
  N2               16                 18
  N3                2                  3
                    vv
clus                  M0  M1  MX
  10P LOSS MUTATED   155   1  16
  10P LOSS WILD-TYPE 193   4  31
D59V6, multiclass
    clus
vv   10P LOSS MUTATED 10P LOSS WILD-TYPE
  M0              155                193
  M1                1                  4
  MX               16                 31
D59V7, binary
                    cls
clus                   0   1
  10P LOSS MUTATED    37 138
  10P LOSS WILD-TYPE  64 167
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10P LOSS MUTATED     37  138
  10P LOSS WILD-TYPE   64  167
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  FEMALE               37                 64
  MALE                138                167
D59V8, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  10P LOSS MUTATED                                       5
  10P LOSS WILD-TYPE                                     7
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  10P LOSS MUTATED                                        2
  10P LOSS WILD-TYPE                                      4
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  10P LOSS MUTATED                                         0
  10P LOSS WILD-TYPE                                       1
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  10P LOSS MUTATED                                                           168
  10P LOSS WILD-TYPE                                                         219
D59V9, multiclass
                                                             clus
vv                                                            10P LOSS MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      5
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                     2
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                    0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              168
                                                             clus
vv                                                            10P LOSS WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                        7
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                       4
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                      1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                219
D59V10, binary
                    cls
clus                   0   1
  10P LOSS MUTATED     4 171
  10P LOSS WILD-TYPE   8 223
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10P LOSS MUTATED      4  171
  10P LOSS WILD-TYPE    8  223
     clus
vv    10P LOSS MUTATED 10P LOSS WILD-TYPE
  NO                 4                  8
  YES              171                223
D59V11, continuous
D59V12, continuous
                    vv
clus                  R0  R1  R2  RX
  10P LOSS MUTATED   148   3   0   8
  10P LOSS WILD-TYPE 182   5   4  10
D59V13, multiclass
    clus
vv   10P LOSS MUTATED 10P LOSS WILD-TYPE
  R0              148                182
  R1                3                  5
  R2                0                  4
  RX                8                 10

Clustering(60) Variable = 10Q LOSS MUTATION ANALYSIS
D60V1, survival
                    sevent
clus2                  0   1
  10Q LOSS MUTATED   112  62
  10Q LOSS WILD-TYPE 127  76
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
               174                203 
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
                62                 76 
$`10Q LOSS MUTATED`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3411 TCGA-18-3412 TCGA-18-4083 TCGA-18-4721 
       12.16         4.47        46.52        11.34         6.15        90.51 
TCGA-18-5592 TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 
        3.02        46.88        99.16        70.13        60.89        34.78 
TCGA-21-1082 TCGA-21-5783 TCGA-21-A5DI TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 
      119.80        88.08        32.19        19.99         7.33        14.93 
TCGA-22-1005 TCGA-22-1011 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4609 
       64.21         1.74        35.08        24.13        38.17         9.53 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 TCGA-22-5482 TCGA-22-5483 
       14.60        44.22         0.79        54.28        11.74        18.84 
TCGA-22-5491 TCGA-33-4533 TCGA-33-4538 TCGA-33-4583 TCGA-33-4586 TCGA-33-6738 
       56.32       114.05        97.94       141.34        14.07        26.99 
TCGA-34-2596 TCGA-34-2605 TCGA-34-5236 TCGA-34-5927 TCGA-34-5929 TCGA-37-3792 
        2.63        28.96         9.04        30.94         4.96         0.39 
TCGA-37-4135 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5027 
        6.81         3.39        74.07        44.71        68.58        60.76 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5036 TCGA-39-5039 TCGA-43-2576 
       24.33         1.94        27.35        35.64        17.88        40.21 
TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-6770 TCGA-43-7658 TCGA-43-A474 
       22.49        27.02        33.07        10.19        66.51        11.61 
TCGA-43-A56V TCGA-46-6025 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 
        5.06        10.65         0.39         0.39        29.95        17.79 
TCGA-52-7809 TCGA-52-7810 TCGA-56-1622 TCGA-56-5898 TCGA-56-7221 TCGA-56-7223 
        5.42        30.31        28.93        18.25         0.99         0.99 
TCGA-56-7580 TCGA-56-7582 TCGA-56-7730 TCGA-56-8503 TCGA-56-8622 TCGA-56-8628 
        1.32         0.85         0.20         1.35         1.78         0.53 
TCGA-56-8629 TCGA-56-A49D TCGA-56-A4BX TCGA-56-A4BY TCGA-56-A4ZK TCGA-58-8386 
        1.12         0.99         1.51         0.99         0.13         0.03 
TCGA-58-8388 TCGA-58-8391 TCGA-58-8392 TCGA-58-8393 TCGA-58-A46J TCGA-58-A46K 
       12.43        71.24        16.47        34.78        64.87        34.36 
TCGA-58-A46M TCGA-60-2695 TCGA-60-2704 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 
       23.24        21.07        37.94        80.42        49.48        66.51 
TCGA-60-2712 TCGA-60-2715 TCGA-60-2719 TCGA-60-2722 TCGA-60-2723 TCGA-60-2725 
        9.01        35.34        42.61        29.85        35.90        26.79 
TCGA-66-2727 TCGA-66-2737 TCGA-66-2753 TCGA-66-2754 TCGA-66-2757 TCGA-66-2758 
       16.96         2.01         1.02         2.01         0.99        20.98 
TCGA-66-2759 TCGA-66-2770 TCGA-66-2773 TCGA-66-2782 TCGA-66-2785 TCGA-66-2786 
       25.02        23.01         3.02        12.00         1.94        25.97 
TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 
       40.01        22.98         4.04         5.03        30.02        10.06 
TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 TCGA-68-7757 TCGA-68-8251 TCGA-77-6842 
       49.05         2.73         6.64         6.94         3.12        29.56 
TCGA-77-7138 TCGA-77-7139 TCGA-77-7463 TCGA-77-7465 TCGA-77-8009 TCGA-77-8133 
       11.18        89.95        46.78        15.75        53.95        53.92 
TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 TCGA-77-8143 TCGA-77-8144 
       39.09        17.69       104.09        11.54        26.40        27.39 
TCGA-77-8148 TCGA-77-8153 TCGA-77-8156 TCGA-77-A5G3 TCGA-77-A5GB TCGA-85-6560 
        9.63        55.33         0.33       117.57        30.81         0.36 
TCGA-85-6798 TCGA-85-7696 TCGA-85-7698 TCGA-85-7699 TCGA-85-7844 TCGA-85-7950 
        1.12         0.59         1.61         0.03         1.25         1.97 
TCGA-85-8052 TCGA-85-8070 TCGA-85-8277 TCGA-85-8351 TCGA-85-8353 TCGA-85-8354 
        0.53        16.77         0.36         1.81         1.78         2.01 
TCGA-85-8479 TCGA-85-8580 TCGA-85-A4QR TCGA-90-A4EE TCGA-92-8064 TCGA-94-7033 
        0.72        14.60         0.82        10.88         5.26         2.86 
TCGA-94-7557 TCGA-96-7545 TCGA-96-8170 TCGA-96-A4JK TCGA-98-8021 TCGA-98-8023 
        0.16        44.15         6.90         8.98        13.58        10.13 
TCGA-J1-A4AH TCGA-L3-A4E7 TCGA-L3-A524 TCGA-LA-A446 TCGA-MF-A522 TCGA-NC-A5HI 
        7.30         1.15        14.76         1.18         3.02        37.32 

$`10Q LOSS WILD-TYPE`
TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 
       81.07        79.46         4.80        13.02        59.51        28.34 
TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4086 TCGA-18-5595 TCGA-21-1070 
       24.92         1.61        43.76         2.79        27.16       119.54 
TCGA-21-1078 TCGA-21-1079 TCGA-21-1080 TCGA-21-1081 TCGA-21-1083 TCGA-21-5782 
       15.55        31.69       122.43         9.30         8.78        31.63 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-1002 TCGA-22-1012 TCGA-22-1016 
       41.69        33.93        10.82         4.31        14.10        27.02 
TCGA-22-1017 TCGA-22-4591 TCGA-22-4594 TCGA-22-4596 TCGA-22-4601 TCGA-22-4604 
       48.82        20.45        48.33         0.56        34.75        13.12 
TCGA-22-4605 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       32.02        19.30        11.77        31.73        64.90        63.52 
TCGA-22-5480 TCGA-22-5481 TCGA-22-5485 TCGA-22-5489 TCGA-22-5492 TCGA-22-A5C4 
       71.34        79.20        30.08        62.86        16.60         0.95 
TCGA-33-4532 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4587 TCGA-33-4589 
        7.63        43.10       173.79       103.53        54.44        10.98 
TCGA-33-6737 TCGA-34-2600 TCGA-34-2604 TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 
       19.76        61.61        31.50        32.84        31.23        50.24 
TCGA-34-5232 TCGA-34-5234 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5928 
       67.79        56.38        23.24        12.00        14.07        18.12 
TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 
        1.08         3.95         0.43         6.54         8.09         7.46 
TCGA-37-4133 TCGA-37-4141 TCGA-39-5011 TCGA-39-5022 TCGA-39-5024 TCGA-39-5028 
        7.82         0.39        47.80        55.17        70.03         1.71 
TCGA-39-5034 TCGA-39-5035 TCGA-39-5037 TCGA-39-5040 TCGA-43-2581 TCGA-43-5668 
       36.39        15.58        35.70        17.06        38.66        11.47 
TCGA-43-5670 TCGA-43-6143 TCGA-43-6647 TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 
       18.05        12.36        24.89         5.42         3.78         6.97 
TCGA-43-7657 TCGA-43-8115 TCGA-43-8116 TCGA-43-8118 TCGA-43-A475 TCGA-46-3768 
        1.58         6.64         6.35         2.93         9.73         9.96 
TCGA-46-6026 TCGA-52-7811 TCGA-52-7812 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 
       13.87         8.75        27.45         0.10         2.04         1.02 
TCGA-56-7222 TCGA-56-7579 TCGA-56-7822 TCGA-56-8504 TCGA-56-8624 TCGA-56-8625 
        0.43         1.45         0.03         5.82         1.18         2.07 
TCGA-56-8626 TCGA-56-A4ZJ TCGA-56-A5DS TCGA-58-8387 TCGA-58-8390 TCGA-58-A46L 
        0.56         1.02         0.26        13.25        29.95        36.59 
TCGA-58-A46N TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 TCGA-60-2706 
       17.72         3.58        12.23        10.22        96.82        92.71 
TCGA-60-2707 TCGA-60-2711 TCGA-60-2713 TCGA-60-2714 TCGA-60-2716 TCGA-60-2720 
       21.70        41.39        56.91        50.33        48.49         3.16 
TCGA-60-2721 TCGA-60-2724 TCGA-60-2726 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 
       32.28        23.57        11.77        43.10        21.07         0.99 
TCGA-66-2755 TCGA-66-2756 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 
        0.92         0.99         0.99         2.01         1.02         2.01 
TCGA-66-2768 TCGA-66-2769 TCGA-66-2771 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 
        2.01         7.07        19.00         2.01        19.00        12.03 
TCGA-66-2781 TCGA-66-2783 TCGA-66-2790 TCGA-66-2794 TCGA-66-2795 TCGA-68-8250 
        3.98        24.95        22.98        54.08         4.01         8.02 
TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 
       73.08        75.09        23.28        20.78         0.49        42.25 
TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 TCGA-77-8007 TCGA-77-8008 TCGA-77-8128 
       70.09       106.95         0.16         6.51        86.76        37.81 
TCGA-77-8130 TCGA-77-8131 TCGA-77-8145 TCGA-77-8150 TCGA-77-8154 TCGA-77-A5FZ 
       82.92        12.59         6.97        54.41        35.90       126.18 
TCGA-77-A5GH TCGA-85-6561 TCGA-85-7697 TCGA-85-7843 TCGA-85-8048 TCGA-85-8049 
       23.44         0.79         0.33         1.15         0.85         1.97 
TCGA-85-8071 TCGA-85-8072 TCGA-85-8276 TCGA-85-8287 TCGA-85-8288 TCGA-85-8350 
       14.07         1.18         0.43         1.45         1.78         1.97 
TCGA-85-8352 TCGA-85-8355 TCGA-85-8481 TCGA-85-8582 TCGA-85-8664 TCGA-85-8666 
        2.20         0.66         0.66        13.91         0.10        15.58 
TCGA-85-A4CL TCGA-85-A50M TCGA-85-A513 TCGA-85-A53L TCGA-90-6837 TCGA-90-7766 
        0.46         0.62         0.79         0.43        24.89         9.50 
TCGA-90-7767 TCGA-90-7769 TCGA-90-7964 TCGA-90-A4ED TCGA-92-7340 TCGA-92-7341 
        2.93        11.77        14.07         8.02         2.70         3.48 
TCGA-92-8063 TCGA-92-8065 TCGA-94-7943 TCGA-96-7544 TCGA-96-8169 TCGA-96-A4JL 
        4.01         2.27        11.70        39.88         6.18         6.02 
TCGA-98-7454 TCGA-98-8020 TCGA-98-8022 TCGA-NC-A5HE TCGA-NC-A5HG 
        8.42         2.73         7.33        56.61        50.86 

  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
              0.03               0.03 
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
            141.34             173.79 
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
             14.68              12.59 
[1] "0.0 - 141.3 (14.7)" "0.0 - 173.8 (12.6)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
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"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-58-8391         TCGA-58-8392         TCGA-58-8393 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-58-A46J         TCGA-58-A46K         TCGA-58-A46L 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-58-A46M         TCGA-58-A46N         TCGA-60-2695 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-60-2696         TCGA-60-2697         TCGA-60-2698 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-60-2703         TCGA-60-2704         TCGA-60-2706 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2756 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-66-2770         TCGA-66-2771         TCGA-66-2773 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-66-2785         TCGA-66-2786         TCGA-66-2787 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-68-7755         TCGA-68-7756         TCGA-68-7757 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-68-8250         TCGA-68-8251         TCGA-77-6842 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-77-6843         TCGA-77-6844         TCGA-77-6845 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-77-7138         TCGA-77-7139         TCGA-77-7140 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-77-7141         TCGA-77-7142         TCGA-77-7335 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-77-7337         TCGA-77-7338         TCGA-77-7463 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-77-7465         TCGA-77-8007         TCGA-77-8008 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-77-8009         TCGA-77-8128         TCGA-77-8130 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-77-8131         TCGA-77-8133         TCGA-77-8136 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-77-8138         TCGA-77-8139         TCGA-77-8140 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-77-8143         TCGA-77-8144         TCGA-77-8145 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-77-8148         TCGA-77-8150         TCGA-77-8153 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-77-8154         TCGA-77-8156         TCGA-77-A5FZ 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-77-A5G3         TCGA-77-A5GB         TCGA-77-A5GH 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-96-8169         TCGA-96-8170         TCGA-96-A4JK 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-96-A4JL         TCGA-98-7454         TCGA-98-8020 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-LA-A446         TCGA-MF-A522         TCGA-NC-A5HE 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
[1] "hr=" "1.1"
D60V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  10Q LOSS MUTATED         1       27       71        0        20        29
  10Q LOSS WILD-TYPE       0       41       62        1        30        42
                    vv
clus                 STAGE IIIA STAGE IIIB STAGE IV
  10Q LOSS MUTATED           26          8        1
  10Q LOSS WILD-TYPE         28         12        4
D60V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  10Q LOSS MUTATED    40 120  18   6
  10Q LOSS WILD-TYPE  53 130  26  13
D60V4, multiclass
    clus
vv   10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  T1               40                 53
  T2              120                130
  T3               18                 26
  T4                6                 13
                    vv
clus                  N0  N1  N2  N3
  10Q LOSS MUTATED   119  45  16   2
  10Q LOSS WILD-TYPE 134  64  18   3
D60V5, multiclass
    clus
vv   10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  N0              119                134
  N1               45                 64
  N2               16                 18
  N3                2                  3
                    vv
clus                  M0  M1  MX
  10Q LOSS MUTATED   161   1  18
  10Q LOSS WILD-TYPE 187   4  29
D60V6, multiclass
    clus
vv   10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  M0              161                187
  M1                1                  4
  MX               18                 29
D60V7, binary
                    cls
clus                   0   1
  10Q LOSS MUTATED    40 144
  10Q LOSS WILD-TYPE  61 161
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10Q LOSS MUTATED     40  144
  10Q LOSS WILD-TYPE   61  161
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  FEMALE               40                 61
  MALE                144                161
D60V8, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  10Q LOSS MUTATED                                       6
  10Q LOSS WILD-TYPE                                     6
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  10Q LOSS MUTATED                                        2
  10Q LOSS WILD-TYPE                                      4
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  10Q LOSS MUTATED                                         0
  10Q LOSS WILD-TYPE                                       1
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  10Q LOSS MUTATED                                                           176
  10Q LOSS WILD-TYPE                                                         211
D60V9, multiclass
                                                             clus
vv                                                            10Q LOSS MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      6
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                     2
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                    0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              176
                                                             clus
vv                                                            10Q LOSS WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                        6
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                       4
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                      1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                211
D60V10, binary
                    cls
clus                   0   1
  10Q LOSS MUTATED     4 180
  10Q LOSS WILD-TYPE   8 214
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10Q LOSS MUTATED      4  180
  10Q LOSS WILD-TYPE    8  214
     clus
vv    10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  NO                 4                  8
  YES              180                214
D60V11, continuous
D60V12, continuous
                    vv
clus                  R0  R1  R2  RX
  10Q LOSS MUTATED   155   2   0   7
  10Q LOSS WILD-TYPE 175   6   4  11
D60V13, multiclass
    clus
vv   10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  R0              155                175
  R1                2                  6
  R2                0                  4
  RX                7                 11

Clustering(61) Variable = 11P LOSS MUTATION ANALYSIS
D61V1, survival
                    sevent
clus2                  0   1
  11P LOSS MUTATED    84  49
  11P LOSS WILD-TYPE 155  89
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
               133                244 
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
                49                 89 
$`11P LOSS MUTATED`
TCGA-18-3406 TCGA-18-3409 TCGA-18-3412 TCGA-18-3414 TCGA-18-3417 TCGA-18-3421 
       12.16        79.46        11.34        13.02        24.92        43.76 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1080 TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 
       46.88        60.89       122.43       119.80         8.78        31.63 
TCGA-21-5786 TCGA-21-5787 TCGA-22-1002 TCGA-22-1017 TCGA-22-4593 TCGA-22-4596 
       33.93        10.82         4.31        48.82        35.08         0.56 
TCGA-22-4601 TCGA-22-5471 TCGA-22-5473 TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 
       34.75        31.73        63.52        44.22         0.79        54.28 
TCGA-22-5481 TCGA-22-5483 TCGA-22-A5C4 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 
       79.20        18.84         0.95       114.05        97.94        43.10 
TCGA-33-4587 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2605 TCGA-34-5231 
       54.44        19.76         2.63        61.61        28.96        50.24 
TCGA-34-5232 TCGA-34-5236 TCGA-34-5928 TCGA-34-5929 TCGA-37-3789 TCGA-37-4130 
       67.79         9.04        18.12         4.96         0.43         8.09 
TCGA-37-4132 TCGA-37-4135 TCGA-37-4141 TCGA-39-5011 TCGA-39-5019 TCGA-39-5021 
        7.46         6.81         0.39        47.80        44.71        68.58 
TCGA-39-5022 TCGA-39-5031 TCGA-39-5035 TCGA-39-5037 TCGA-43-2581 TCGA-43-3920 
       55.17        27.35        15.58        35.70        38.66        33.07 
TCGA-43-6143 TCGA-43-7657 TCGA-43-7658 TCGA-43-A56V TCGA-46-3768 TCGA-46-6025 
       12.36         1.58        66.51         5.06         9.96        10.65 
TCGA-51-4079 TCGA-56-7221 TCGA-56-7222 TCGA-56-7579 TCGA-56-7580 TCGA-56-7822 
        0.39         0.99         0.43         1.45         1.32         0.03 
TCGA-56-8503 TCGA-56-8504 TCGA-56-8624 TCGA-56-8628 TCGA-56-8629 TCGA-56-A4ZJ 
        1.35         5.82         1.18         0.53         1.12         1.02 
TCGA-56-A4ZK TCGA-58-8387 TCGA-58-8390 TCGA-60-2695 TCGA-60-2698 TCGA-60-2708 
        0.13        13.25        29.95        21.07        10.22        80.42 
TCGA-60-2712 TCGA-60-2714 TCGA-60-2720 TCGA-60-2721 TCGA-60-2723 TCGA-60-2724 
        9.01        50.33         3.16        32.28        35.90        23.57 
TCGA-60-2726 TCGA-66-2742 TCGA-66-2758 TCGA-66-2759 TCGA-66-2767 TCGA-66-2768 
       11.77        21.07        20.98        25.02         2.01         2.01 
TCGA-66-2771 TCGA-66-2773 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2793 
       19.00         3.02        12.03         3.98        12.00        10.06 
TCGA-68-7757 TCGA-68-8250 TCGA-68-8251 TCGA-77-6844 TCGA-77-7139 TCGA-77-7141 
        6.94         8.02         3.12        75.09        89.95         0.49 
TCGA-77-7338 TCGA-77-7465 TCGA-77-8008 TCGA-77-8009 TCGA-77-8133 TCGA-77-8138 
        0.16        15.75        86.76        53.95        53.92        17.69 
TCGA-77-8140 TCGA-77-8143 TCGA-77-8144 TCGA-77-8148 TCGA-77-8150 TCGA-77-8153 
       11.54        26.40        27.39         9.63        54.41        55.33 
TCGA-85-6561 TCGA-85-7696 TCGA-85-7699 TCGA-85-7843 TCGA-85-7950 TCGA-85-8048 
        0.79         0.59         0.03         1.15         1.97         0.85 
TCGA-85-8277 TCGA-85-8288 TCGA-85-8352 TCGA-85-8353 TCGA-85-8479 TCGA-85-A4QR 
        0.36         1.78         2.20         1.78         0.72         0.82 
TCGA-90-7964 TCGA-96-7545 TCGA-98-8020 TCGA-98-8023 TCGA-MF-A522 TCGA-NC-A5HE 
       14.07        44.15         2.73        10.13         3.02        56.61 
TCGA-NC-A5HG 
       50.86 

$`11P LOSS WILD-TYPE`
TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3415 TCGA-18-3416 
        4.47        81.07         4.80        46.52        59.51        28.34 
TCGA-18-3419 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
        1.61         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1072 TCGA-21-1075 TCGA-21-1077 TCGA-21-1078 TCGA-21-1079 
      119.54        99.16        70.13        34.78        15.55        31.69 
TCGA-21-1081 TCGA-21-5783 TCGA-21-5784 TCGA-21-A5DI TCGA-22-0940 TCGA-22-0944 
        9.30        88.08        41.69        32.19        19.99         7.33 
TCGA-22-1000 TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 
       14.93        64.21         1.74        14.10        27.02        20.45 
TCGA-22-4594 TCGA-22-4595 TCGA-22-4599 TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 
       48.33        24.13        38.17        13.12        32.02        19.30 
TCGA-22-4609 TCGA-22-4613 TCGA-22-5472 TCGA-22-5474 TCGA-22-5480 TCGA-22-5482 
        9.53        11.77        64.90        14.60        71.34        11.74 
TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4566 
       30.08        62.86        56.32        16.60         7.63       173.79 
TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-4589 TCGA-33-6738 TCGA-34-2604 
      103.53       141.34        14.07        10.98        26.99        31.50 
TCGA-34-2608 TCGA-34-2609 TCGA-34-5234 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 
       32.84        31.23        56.38        23.24        12.00        14.07 
TCGA-34-5927 TCGA-34-7107 TCGA-37-3783 TCGA-37-3792 TCGA-37-4129 TCGA-37-4133 
       30.94         1.08         3.95         0.39         6.54         7.82 
TCGA-37-5819 TCGA-39-5016 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 
        3.39        74.07        70.03        60.76         1.71        24.33 
TCGA-39-5030 TCGA-39-5034 TCGA-39-5036 TCGA-39-5039 TCGA-39-5040 TCGA-43-2576 
        1.94        36.39        35.64        17.88        17.06        40.21 
TCGA-43-2578 TCGA-43-3394 TCGA-43-5668 TCGA-43-5670 TCGA-43-6647 TCGA-43-6770 
       22.49        27.02        11.47        18.05        24.89        10.19 
TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-8115 TCGA-43-8116 TCGA-43-8118 
        5.42         3.78         6.97         6.64         6.35         2.93 
TCGA-43-A474 TCGA-43-A475 TCGA-46-6026 TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 
       11.61         9.73        13.87         0.39        29.95        17.79 
TCGA-52-7809 TCGA-52-7810 TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 
        5.42        30.31         8.75        27.45        28.93         0.10 
TCGA-56-5898 TCGA-56-6545 TCGA-56-6546 TCGA-56-7223 TCGA-56-7582 TCGA-56-7730 
       18.25         2.04         1.02         0.99         0.85         0.20 
TCGA-56-8622 TCGA-56-8625 TCGA-56-8626 TCGA-56-A49D TCGA-56-A4BX TCGA-56-A4BY 
        1.78         2.07         0.56         0.99         1.51         0.99 
TCGA-56-A5DS TCGA-58-8386 TCGA-58-8388 TCGA-58-8391 TCGA-58-8392 TCGA-58-8393 
        0.26         0.03        12.43        71.24        16.47        34.78 
TCGA-58-A46J TCGA-58-A46K TCGA-58-A46L TCGA-58-A46M TCGA-58-A46N TCGA-60-2696 
       64.87        34.36        36.59        23.24        17.72         3.58 
TCGA-60-2697 TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 TCGA-60-2709 
       12.23        96.82        37.94        92.71        21.70        49.48 
TCGA-60-2710 TCGA-60-2711 TCGA-60-2713 TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 
       66.51        41.39        56.91        35.34        48.49        42.61 
TCGA-60-2722 TCGA-60-2725 TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 TCGA-66-2744 
       29.85        26.79        16.96        43.10         2.01         0.99 
TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2763 
        1.02         2.01         0.92         0.99         0.99         0.99 
TCGA-66-2765 TCGA-66-2766 TCGA-66-2769 TCGA-66-2770 TCGA-66-2777 TCGA-66-2778 
        2.01         1.02         7.07        23.01         2.01        19.00 
TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 
       24.95         1.94        25.97        40.01        22.98         4.04 
TCGA-66-2790 TCGA-66-2791 TCGA-66-2792 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 
       22.98         5.03        30.02        54.08         4.01        49.05 
TCGA-68-7755 TCGA-68-7756 TCGA-77-6842 TCGA-77-6843 TCGA-77-6845 TCGA-77-7138 
        2.73         6.64        29.56        73.08        23.28        11.18 
TCGA-77-7140 TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 TCGA-77-7463 TCGA-77-8007 
       20.78        42.25        70.09       106.95        46.78         6.51 
TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 TCGA-77-8136 TCGA-77-8139 TCGA-77-8145 
       37.81        82.92        12.59        39.09       104.09         6.97 
TCGA-77-8154 TCGA-77-8156 TCGA-77-A5FZ TCGA-77-A5G3 TCGA-77-A5GB TCGA-77-A5GH 
       35.90         0.33       126.18       117.57        30.81        23.44 
TCGA-85-6560 TCGA-85-6798 TCGA-85-7697 TCGA-85-7698 TCGA-85-7844 TCGA-85-8049 
        0.36         1.12         0.33         1.61         1.25         1.97 
TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 TCGA-85-8276 TCGA-85-8287 
        0.53        16.77        14.07         1.18         0.43         1.45 
TCGA-85-8350 TCGA-85-8351 TCGA-85-8354 TCGA-85-8355 TCGA-85-8481 TCGA-85-8580 
        1.97         1.81         2.01         0.66         0.66        14.60 
TCGA-85-8582 TCGA-85-8664 TCGA-85-8666 TCGA-85-A4CL TCGA-85-A50M TCGA-85-A513 
       13.91         0.10        15.58         0.46         0.62         0.79 
TCGA-85-A53L TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 TCGA-90-7769 TCGA-90-A4ED 
        0.43        24.89         9.50         2.93        11.77         8.02 
TCGA-90-A4EE TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 
       10.88         2.70         3.48         4.01         5.26         2.27 
TCGA-94-7033 TCGA-94-7557 TCGA-94-7943 TCGA-96-7544 TCGA-96-8169 TCGA-96-8170 
        2.86         0.16        11.70        39.88         6.18         6.90 
TCGA-96-A4JK TCGA-96-A4JL TCGA-98-7454 TCGA-98-8021 TCGA-98-8022 TCGA-J1-A4AH 
        8.98         6.02         8.42        13.58         7.33         7.30 
TCGA-L3-A4E7 TCGA-L3-A524 TCGA-LA-A446 TCGA-NC-A5HI 
        1.15        14.76         1.18        37.32 

  11P LOSS MUTATED 11P LOSS WILD-TYPE 
              0.03               0.03 
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
            122.43             173.79 
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
             12.36              13.99 
[1] "0.0 - 122.4 (12.4)" "0.0 - 173.8 (14.0)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-22-A5C4         TCGA-33-4532         TCGA-33-4533 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-33-4538         TCGA-33-4547         TCGA-33-4566 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-33-4582         TCGA-33-4583         TCGA-33-4586 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-33-4587         TCGA-33-4589         TCGA-33-6737 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-33-6738         TCGA-34-2596         TCGA-34-2600 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-34-2604         TCGA-34-2605         TCGA-34-2608 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-34-2609         TCGA-34-5231         TCGA-34-5232 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-34-5234         TCGA-34-5236         TCGA-34-5239 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-34-5240         TCGA-34-5241         TCGA-34-5927 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-34-5928         TCGA-34-5929         TCGA-34-7107 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-3792 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4132 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-37-4133         TCGA-37-4135         TCGA-37-4141 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-37-5819         TCGA-39-5011         TCGA-39-5016 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-39-5019         TCGA-39-5021         TCGA-39-5022 
  "11P LOSS MUTATED"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-39-5024         TCGA-39-5027         TCGA-39-5028 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-39-5029         TCGA-39-5030         TCGA-39-5031 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-39-5034         TCGA-39-5035         TCGA-39-5036 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-39-5037         TCGA-39-5039         TCGA-39-5040 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-43-8115         TCGA-43-8116         TCGA-43-8118 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-43-A474         TCGA-43-A475         TCGA-43-A56V 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-46-3768         TCGA-46-6025         TCGA-46-6026 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-51-4079         TCGA-51-4080         TCGA-51-4081 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-52-7622         TCGA-52-7809         TCGA-52-7810 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-52-7811         TCGA-52-7812         TCGA-56-1622 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-56-5897         TCGA-56-5898         TCGA-56-6545 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-56-6546         TCGA-56-7221         TCGA-56-7222 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-56-7223         TCGA-56-7579         TCGA-56-7580 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-56-7582         TCGA-56-7730         TCGA-56-7822 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-56-8503         TCGA-56-8504         TCGA-56-8622 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-56-8624         TCGA-56-8625         TCGA-56-8626 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-56-8628         TCGA-56-8629         TCGA-56-A49D 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-56-A4BX         TCGA-56-A4BY         TCGA-56-A4ZJ 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-56-A4ZK         TCGA-56-A5DS         TCGA-58-8386 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-58-8387         TCGA-58-8388         TCGA-58-8390 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-58-8391         TCGA-58-8392         TCGA-58-8393 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-58-A46J         TCGA-58-A46K         TCGA-58-A46L 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-58-A46M         TCGA-58-A46N         TCGA-60-2695 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-60-2696         TCGA-60-2697         TCGA-60-2698 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-60-2703         TCGA-60-2704         TCGA-60-2706 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2756 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-66-2770         TCGA-66-2771         TCGA-66-2773 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-66-2785         TCGA-66-2786         TCGA-66-2787 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-68-7755         TCGA-68-7756         TCGA-68-7757 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-68-8250         TCGA-68-8251         TCGA-77-6842 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-77-6843         TCGA-77-6844         TCGA-77-6845 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-77-7138         TCGA-77-7139         TCGA-77-7140 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-77-7141         TCGA-77-7142         TCGA-77-7335 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-77-7337         TCGA-77-7338         TCGA-77-7463 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-77-7465         TCGA-77-8007         TCGA-77-8008 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-77-8009         TCGA-77-8128         TCGA-77-8130 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-77-8131         TCGA-77-8133         TCGA-77-8136 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-77-8138         TCGA-77-8139         TCGA-77-8140 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-77-8143         TCGA-77-8144         TCGA-77-8145 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-77-8148         TCGA-77-8150         TCGA-77-8153 
  "11P LOSS MUTATED"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-77-8154         TCGA-77-8156         TCGA-77-A5FZ 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-77-A5G3         TCGA-77-A5GB         TCGA-77-A5GH 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-96-8169         TCGA-96-8170         TCGA-96-A4JK 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-96-A4JL         TCGA-98-7454         TCGA-98-8020 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
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  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-22-A5C4         TCGA-33-4532         TCGA-33-4533 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-33-4538         TCGA-33-4547         TCGA-33-4566 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-33-4582         TCGA-33-4583         TCGA-33-4586 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-33-4587         TCGA-33-4589         TCGA-33-6737 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-33-6738         TCGA-34-2596         TCGA-34-2600 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-34-2604         TCGA-34-2605         TCGA-34-2608 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-34-2609         TCGA-34-5231         TCGA-34-5232 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-34-5234         TCGA-34-5236         TCGA-34-5239 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-34-5240         TCGA-34-5241         TCGA-34-5927 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-34-5928         TCGA-34-5929         TCGA-34-7107 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-3792 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4132 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-37-4133         TCGA-37-4135         TCGA-37-4141 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-37-5819         TCGA-39-5011         TCGA-39-5016 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-39-5019         TCGA-39-5021         TCGA-39-5022 
  "11P LOSS MUTATED"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-39-5024         TCGA-39-5027         TCGA-39-5028 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-39-5029         TCGA-39-5030         TCGA-39-5031 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-39-5034         TCGA-39-5035         TCGA-39-5036 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-39-5037         TCGA-39-5039         TCGA-39-5040 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-43-8115         TCGA-43-8116         TCGA-43-8118 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-43-A474         TCGA-43-A475         TCGA-43-A56V 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-46-3768         TCGA-46-6025         TCGA-46-6026 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-51-4079         TCGA-51-4080         TCGA-51-4081 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-52-7622         TCGA-52-7809         TCGA-52-7810 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-52-7811         TCGA-52-7812         TCGA-56-1622 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-56-5897         TCGA-56-5898         TCGA-56-6545 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-56-6546         TCGA-56-7221         TCGA-56-7222 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-56-7223         TCGA-56-7579         TCGA-56-7580 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-56-7582         TCGA-56-7730         TCGA-56-7822 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-56-8503         TCGA-56-8504         TCGA-56-8622 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-56-8624         TCGA-56-8625         TCGA-56-8626 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-56-8628         TCGA-56-8629         TCGA-56-A49D 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-56-A4BX         TCGA-56-A4BY         TCGA-56-A4ZJ 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-56-A4ZK         TCGA-56-A5DS         TCGA-58-8386 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-58-8387         TCGA-58-8388         TCGA-58-8390 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-58-8391         TCGA-58-8392         TCGA-58-8393 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-58-A46J         TCGA-58-A46K         TCGA-58-A46L 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-58-A46M         TCGA-58-A46N         TCGA-60-2695 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-60-2696         TCGA-60-2697         TCGA-60-2698 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-60-2703         TCGA-60-2704         TCGA-60-2706 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2756 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-66-2770         TCGA-66-2771         TCGA-66-2773 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-66-2785         TCGA-66-2786         TCGA-66-2787 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-68-7755         TCGA-68-7756         TCGA-68-7757 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-68-8250         TCGA-68-8251         TCGA-77-6842 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-77-6843         TCGA-77-6844         TCGA-77-6845 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-77-7138         TCGA-77-7139         TCGA-77-7140 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-77-7141         TCGA-77-7142         TCGA-77-7335 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-77-7337         TCGA-77-7338         TCGA-77-7463 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-77-7465         TCGA-77-8007         TCGA-77-8008 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-77-8009         TCGA-77-8128         TCGA-77-8130 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-77-8131         TCGA-77-8133         TCGA-77-8136 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-77-8138         TCGA-77-8139         TCGA-77-8140 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-77-8143         TCGA-77-8144         TCGA-77-8145 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-77-8148         TCGA-77-8150         TCGA-77-8153 
  "11P LOSS MUTATED"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-77-8154         TCGA-77-8156         TCGA-77-A5FZ 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-77-A5G3         TCGA-77-A5GB         TCGA-77-A5GH 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-96-8169         TCGA-96-8170         TCGA-96-A4JK 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-96-A4JL         TCGA-98-7454         TCGA-98-8020 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-LA-A446         TCGA-MF-A522         TCGA-NC-A5HE 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
[1] "hr=" "1"  
D61V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  11P LOSS MUTATED         0       21       49        0        17        21
  11P LOSS WILD-TYPE       1       47       84        1        33        50
                    vv
clus                 STAGE IIIA STAGE IIIB STAGE IV
  11P LOSS MUTATED           21          4        4
  11P LOSS WILD-TYPE         33         16        1
D61V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  11P LOSS MUTATED    30  89  16   5
  11P LOSS WILD-TYPE  63 161  28  14
D61V4, multiclass
    clus
vv   11P LOSS MUTATED 11P LOSS WILD-TYPE
  T1               30                 63
  T2               89                161
  T3               16                 28
  T4                5                 14
                    vv
clus                  N0  N1  N2  N3
  11P LOSS MUTATED    89  42   8   1
  11P LOSS WILD-TYPE 164  67  26   4
D61V5, multiclass
    clus
vv   11P LOSS MUTATED 11P LOSS WILD-TYPE
  N0               89                164
  N1               42                 67
  N2                8                 26
  N3                1                  4
                    vv
clus                  M0  M1  MX
  11P LOSS MUTATED   120   4  12
  11P LOSS WILD-TYPE 228   1  35
D61V6, multiclass
    clus
vv   11P LOSS MUTATED 11P LOSS WILD-TYPE
  M0              120                228
  M1                4                  1
  MX               12                 35
D61V7, binary
                    cls
clus                   0   1
  11P LOSS MUTATED    34 106
  11P LOSS WILD-TYPE  67 199
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11P LOSS MUTATED     34  106
  11P LOSS WILD-TYPE   67  199
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  FEMALE               34                 67
  MALE                106                199
D61V8, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  11P LOSS MUTATED                                       4
  11P LOSS WILD-TYPE                                     8
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  11P LOSS MUTATED                                        1
  11P LOSS WILD-TYPE                                      5
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  11P LOSS MUTATED                                         1
  11P LOSS WILD-TYPE                                       0
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  11P LOSS MUTATED                                                           134
  11P LOSS WILD-TYPE                                                         253
D61V9, multiclass
                                                             clus
vv                                                            11P LOSS MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      4
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                     1
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              134
                                                             clus
vv                                                            11P LOSS WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                        8
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                       5
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                      0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                253
D61V10, binary
                    cls
clus                   0   1
  11P LOSS MUTATED     4 136
  11P LOSS WILD-TYPE   8 258
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11P LOSS MUTATED      4  136
  11P LOSS WILD-TYPE    8  258
     clus
vv    11P LOSS MUTATED 11P LOSS WILD-TYPE
  NO                 4                  8
  YES              136                258
D61V11, continuous
D61V12, continuous
                    vv
clus                  R0  R1  R2  RX
  11P LOSS MUTATED   117   2   1   4
  11P LOSS WILD-TYPE 213   6   3  14
D61V13, multiclass
    clus
vv   11P LOSS MUTATED 11P LOSS WILD-TYPE
  R0              117                213
  R1                2                  6
  R2                1                  3
  RX                4                 14

Clustering(62) Variable = 11Q LOSS MUTATION ANALYSIS
D62V1, survival
                    sevent
clus2                  0   1
  11Q LOSS MUTATED    73  39
  11Q LOSS WILD-TYPE 166  99
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
               112                265 
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
                39                 99 
$`11Q LOSS MUTATED`
TCGA-18-3406 TCGA-18-3409 TCGA-18-3412 TCGA-18-3414 TCGA-18-3417 TCGA-18-3421 
       12.16        79.46        11.34        13.02        24.92        43.76 
TCGA-21-1076 TCGA-21-1080 TCGA-21-1083 TCGA-21-5783 TCGA-21-5787 TCGA-22-1002 
       60.89       122.43         8.78        88.08        10.82         4.31 
TCGA-22-1011 TCGA-22-4593 TCGA-22-4601 TCGA-22-5473 TCGA-22-5477 TCGA-22-5478 
        1.74        35.08        34.75        63.52        44.22         0.79 
TCGA-33-4533 TCGA-33-4589 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2605 
      114.05        10.98        19.76         2.63        61.61        28.96 
TCGA-34-5232 TCGA-34-5236 TCGA-34-5928 TCGA-37-3789 TCGA-37-4130 TCGA-39-5016 
       67.79         9.04        18.12         0.43         8.09        74.07 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5027 TCGA-39-5031 TCGA-39-5037 
       44.71        68.58        55.17        60.76        27.35        35.70 
TCGA-43-2581 TCGA-43-3920 TCGA-43-7657 TCGA-43-7658 TCGA-43-8116 TCGA-43-A474 
       38.66        33.07         1.58        66.51         6.35        11.61 
TCGA-43-A56V TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-52-7809 
        5.06         9.96        10.65        13.87         0.39         5.42 
TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 TCGA-56-7580 TCGA-56-7822 TCGA-56-8504 
        0.99         0.43         0.99         1.32         0.03         5.82 
TCGA-56-8624 TCGA-56-8629 TCGA-56-A4BX TCGA-56-A4ZK TCGA-58-8387 TCGA-58-8390 
        1.18         1.12         1.51         0.13        13.25        29.95 
TCGA-60-2695 TCGA-60-2698 TCGA-60-2708 TCGA-60-2712 TCGA-60-2714 TCGA-60-2722 
       21.07        10.22        80.42         9.01        50.33        29.85 
TCGA-60-2723 TCGA-60-2725 TCGA-60-2726 TCGA-66-2758 TCGA-66-2767 TCGA-66-2768 
       35.90        26.79        11.77        20.98         2.01         2.01 
TCGA-66-2790 TCGA-66-2793 TCGA-68-8250 TCGA-68-8251 TCGA-77-7139 TCGA-77-7338 
       22.98        10.06         8.02         3.12        89.95         0.16 
TCGA-77-7465 TCGA-77-8008 TCGA-77-8009 TCGA-77-8130 TCGA-77-8133 TCGA-77-8136 
       15.75        86.76        53.95        82.92        53.92        39.09 
TCGA-77-8138 TCGA-77-8143 TCGA-77-8144 TCGA-77-8148 TCGA-77-8150 TCGA-77-8153 
       17.69        26.40        27.39         9.63        54.41        55.33 
TCGA-77-A5G3 TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 TCGA-85-7699 TCGA-85-8048 
      117.57         0.79         1.12         0.59         0.03         0.85 
TCGA-85-8072 TCGA-85-8277 TCGA-85-8352 TCGA-85-8479 TCGA-85-8664 TCGA-85-A4QR 
        1.18         0.36         2.20         0.72         0.10         0.82 
TCGA-90-7766 TCGA-90-7964 TCGA-92-7341 TCGA-96-7545 TCGA-96-A4JL TCGA-98-8020 
        9.50        14.07         3.48        44.15         6.02         2.73 
TCGA-98-8023 TCGA-MF-A522 TCGA-NC-A5HE TCGA-NC-A5HG 
       10.13         3.02        56.61        50.86 

$`11Q LOSS WILD-TYPE`
TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3415 TCGA-18-3416 
        4.47        81.07         4.80        46.52        59.51        28.34 
TCGA-18-3419 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
        1.61         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 TCGA-21-1077 TCGA-21-1078 
      119.54        46.88        99.16        70.13        34.78        15.55 
TCGA-21-1079 TCGA-21-1081 TCGA-21-1082 TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 
       31.69         9.30       119.80        31.63        41.69        33.93 
TCGA-21-A5DI TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1005 TCGA-22-1012 
       32.19        19.99         7.33        14.93        64.21        14.10 
TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 TCGA-22-4594 TCGA-22-4595 TCGA-22-4596 
       27.02        48.82        20.45        48.33        24.13         0.56 
TCGA-22-4599 TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 
       38.17        13.12        32.02        19.30         9.53        11.77 
TCGA-22-5471 TCGA-22-5472 TCGA-22-5474 TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 
       31.73        64.90        14.60        54.28        71.34        79.20 
TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 
       11.74        18.84        30.08        62.86        56.32        16.60 
TCGA-22-A5C4 TCGA-33-4532 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 
        0.95         7.63        97.94        43.10       173.79       103.53 
TCGA-33-4583 TCGA-33-4586 TCGA-33-4587 TCGA-33-6738 TCGA-34-2604 TCGA-34-2608 
      141.34        14.07        54.44        26.99        31.50        32.84 
TCGA-34-2609 TCGA-34-5231 TCGA-34-5234 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 
       31.23        50.24        56.38        23.24        12.00        14.07 
TCGA-34-5927 TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 TCGA-37-3792 TCGA-37-4129 
       30.94         4.96         1.08         3.95         0.39         6.54 
TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5011 
        7.46         7.82         6.81         0.39         3.39        47.80 
TCGA-39-5024 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5034 TCGA-39-5035 
       70.03         1.71        24.33         1.94        36.39        15.58 
TCGA-39-5036 TCGA-39-5039 TCGA-39-5040 TCGA-43-2576 TCGA-43-2578 TCGA-43-3394 
       35.64        17.88        17.06        40.21        22.49        27.02 
TCGA-43-5668 TCGA-43-5670 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 
       11.47        18.05        12.36        24.89        10.19         5.42 
TCGA-43-6773 TCGA-43-7656 TCGA-43-8115 TCGA-43-8118 TCGA-43-A475 TCGA-51-4080 
        3.78         6.97         6.64         2.93         9.73         0.39 
TCGA-51-4081 TCGA-52-7622 TCGA-52-7810 TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 
       29.95        17.79        30.31         8.75        27.45        28.93 
TCGA-56-5897 TCGA-56-5898 TCGA-56-6545 TCGA-56-6546 TCGA-56-7579 TCGA-56-7582 
        0.10        18.25         2.04         1.02         1.45         0.85 
TCGA-56-7730 TCGA-56-8503 TCGA-56-8622 TCGA-56-8625 TCGA-56-8626 TCGA-56-8628 
        0.20         1.35         1.78         2.07         0.56         0.53 
TCGA-56-A49D TCGA-56-A4BY TCGA-56-A4ZJ TCGA-56-A5DS TCGA-58-8386 TCGA-58-8388 
        0.99         0.99         1.02         0.26         0.03        12.43 
TCGA-58-8391 TCGA-58-8392 TCGA-58-8393 TCGA-58-A46J TCGA-58-A46K TCGA-58-A46L 
       71.24        16.47        34.78        64.87        34.36        36.59 
TCGA-58-A46M TCGA-58-A46N TCGA-60-2696 TCGA-60-2697 TCGA-60-2703 TCGA-60-2704 
       23.24        17.72         3.58        12.23        96.82        37.94 
TCGA-60-2706 TCGA-60-2707 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2713 
       92.71        21.70        49.48        66.51        41.39        56.91 
TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2724 
       35.34        48.49        42.61         3.16        32.28        23.57 
TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 
       16.96        43.10         2.01        21.07         0.99         1.02 
TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2759 TCGA-66-2763 
        2.01         0.92         0.99         0.99        25.02         0.99 
TCGA-66-2765 TCGA-66-2766 TCGA-66-2769 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 
        2.01         1.02         7.07        23.01        19.00         3.02 
TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 
        2.01        19.00        12.03         3.98        12.00        24.95 
TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 
        1.94        25.97        40.01        22.98         4.04         5.03 
TCGA-66-2792 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 
       30.02        54.08         4.01        49.05         2.73         6.64 
TCGA-68-7757 TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 
        6.94        29.56        73.08        75.09        23.28        11.18 
TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 TCGA-77-7463 
       20.78         0.49        42.25        70.09       106.95        46.78 
TCGA-77-8007 TCGA-77-8128 TCGA-77-8131 TCGA-77-8139 TCGA-77-8140 TCGA-77-8145 
        6.51        37.81        12.59       104.09        11.54         6.97 
TCGA-77-8154 TCGA-77-8156 TCGA-77-A5FZ TCGA-77-A5GB TCGA-77-A5GH TCGA-85-6560 
       35.90         0.33       126.18        30.81        23.44         0.36 
TCGA-85-7697 TCGA-85-7698 TCGA-85-7843 TCGA-85-7844 TCGA-85-7950 TCGA-85-8049 
        0.33         1.61         1.15         1.25         1.97         1.97 
TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 TCGA-85-8276 TCGA-85-8287 TCGA-85-8288 
        0.53        16.77        14.07         0.43         1.45         1.78 
TCGA-85-8350 TCGA-85-8351 TCGA-85-8353 TCGA-85-8354 TCGA-85-8355 TCGA-85-8481 
        1.97         1.81         1.78         2.01         0.66         0.66 
TCGA-85-8580 TCGA-85-8582 TCGA-85-8666 TCGA-85-A4CL TCGA-85-A50M TCGA-85-A513 
       14.60        13.91        15.58         0.46         0.62         0.79 
TCGA-85-A53L TCGA-90-6837 TCGA-90-7767 TCGA-90-7769 TCGA-90-A4ED TCGA-90-A4EE 
        0.43        24.89         2.93        11.77         8.02        10.88 
TCGA-92-7340 TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 
        2.70         4.01         5.26         2.27         2.86         0.16 
TCGA-94-7943 TCGA-96-7544 TCGA-96-8169 TCGA-96-8170 TCGA-96-A4JK TCGA-98-7454 
       11.70        39.88         6.18         6.90         8.98         8.42 
TCGA-98-8021 TCGA-98-8022 TCGA-J1-A4AH TCGA-L3-A4E7 TCGA-L3-A524 TCGA-LA-A446 
       13.58         7.33         7.30         1.15        14.76         1.18 
TCGA-NC-A5HI 
       37.32 

  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
              0.03               0.03 
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
            122.43             173.79 
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
            11.965             14.070 
[1] "0.0 - 122.4 (12.0)" "0.0 - 173.8 (14.1)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-22-A5C4         TCGA-33-4532         TCGA-33-4533 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-33-4538         TCGA-33-4547         TCGA-33-4566 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-33-4582         TCGA-33-4583         TCGA-33-4586 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-33-4587         TCGA-33-4589         TCGA-33-6737 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-33-6738         TCGA-34-2596         TCGA-34-2600 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-34-2604         TCGA-34-2605         TCGA-34-2608 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-34-2609         TCGA-34-5231         TCGA-34-5232 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-34-5234         TCGA-34-5236         TCGA-34-5239 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-34-5240         TCGA-34-5241         TCGA-34-5927 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-34-5928         TCGA-34-5929         TCGA-34-7107 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-3792 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4132 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-37-4133         TCGA-37-4135         TCGA-37-4141 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-37-5819         TCGA-39-5011         TCGA-39-5016 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-39-5019         TCGA-39-5021         TCGA-39-5022 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-39-5024         TCGA-39-5027         TCGA-39-5028 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-39-5029         TCGA-39-5030         TCGA-39-5031 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-39-5034         TCGA-39-5035         TCGA-39-5036 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-39-5037         TCGA-39-5039         TCGA-39-5040 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-43-8115         TCGA-43-8116         TCGA-43-8118 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-43-A474         TCGA-43-A475         TCGA-43-A56V 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-46-3768         TCGA-46-6025         TCGA-46-6026 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-51-4079         TCGA-51-4080         TCGA-51-4081 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-52-7622         TCGA-52-7809         TCGA-52-7810 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-52-7811         TCGA-52-7812         TCGA-56-1622 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-56-5897         TCGA-56-5898         TCGA-56-6545 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-56-6546         TCGA-56-7221         TCGA-56-7222 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-56-7223         TCGA-56-7579         TCGA-56-7580 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-56-7582         TCGA-56-7730         TCGA-56-7822 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-56-8503         TCGA-56-8504         TCGA-56-8622 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-56-8624         TCGA-56-8625         TCGA-56-8626 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-56-8628         TCGA-56-8629         TCGA-56-A49D 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-56-A4BX         TCGA-56-A4BY         TCGA-56-A4ZJ 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-56-A4ZK         TCGA-56-A5DS         TCGA-58-8386 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-58-8387         TCGA-58-8388         TCGA-58-8390 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-58-8391         TCGA-58-8392         TCGA-58-8393 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-58-A46J         TCGA-58-A46K         TCGA-58-A46L 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-58-A46M         TCGA-58-A46N         TCGA-60-2695 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-60-2696         TCGA-60-2697         TCGA-60-2698 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-60-2703         TCGA-60-2704         TCGA-60-2706 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
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"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-96-8169         TCGA-96-8170         TCGA-96-A4JK 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-96-A4JL         TCGA-98-7454         TCGA-98-8020 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-LA-A446         TCGA-MF-A522         TCGA-NC-A5HE 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D62V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  11Q LOSS MUTATED         0       15       37        0        16        23
  11Q LOSS WILD-TYPE       1       53       96        1        34        48
                    vv
clus                 STAGE IIIA STAGE IIIB STAGE IV
  11Q LOSS MUTATED           16          4        2
  11Q LOSS WILD-TYPE         38         16        3
D62V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  11Q LOSS MUTATED    21  78  12   5
  11Q LOSS WILD-TYPE  72 172  32  14
D62V4, multiclass
    clus
vv   11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  T1               21                 72
  T2               78                172
  T3               12                 32
  T4                5                 14
                    vv
clus                  N0  N1  N2  N3
  11Q LOSS MUTATED    67  42   6   1
  11Q LOSS WILD-TYPE 186  67  28   4
D62V5, multiclass
    clus
vv   11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  N0               67                186
  N1               42                 67
  N2                6                 28
  N3                1                  4
                    vv
clus                  M0  M1  MX
  11Q LOSS MUTATED    98   2  12
  11Q LOSS WILD-TYPE 250   3  35
D62V6, multiclass
    clus
vv   11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  M0               98                250
  M1                2                  3
  MX               12                 35
D62V7, binary
                    cls
clus                   0   1
  11Q LOSS MUTATED    23  93
  11Q LOSS WILD-TYPE  78 212
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11Q LOSS MUTATED     23   93
  11Q LOSS WILD-TYPE   78  212
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  FEMALE               23                 78
  MALE                 93                212
D62V8, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  11Q LOSS MUTATED                                       5
  11Q LOSS WILD-TYPE                                     7
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  11Q LOSS MUTATED                                        1
  11Q LOSS WILD-TYPE                                      5
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  11Q LOSS MUTATED                                         0
  11Q LOSS WILD-TYPE                                       1
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  11Q LOSS MUTATED                                                           110
  11Q LOSS WILD-TYPE                                                         277
D62V9, multiclass
                                                             clus
vv                                                            11Q LOSS MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      5
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                     1
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                    0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              110
                                                             clus
vv                                                            11Q LOSS WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                        7
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                       5
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                      1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                277
D62V10, binary
                    cls
clus                   0   1
  11Q LOSS MUTATED     3 113
  11Q LOSS WILD-TYPE   9 281
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11Q LOSS MUTATED      3  113
  11Q LOSS WILD-TYPE    9  281
     clus
vv    11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  NO                 3                  9
  YES              113                281
D62V11, continuous
D62V12, continuous
                    vv
clus                  R0  R1  R2  RX
  11Q LOSS MUTATED    97   2   1   1
  11Q LOSS WILD-TYPE 233   6   3  17
D62V13, multiclass
    clus
vv   11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  R0               97                233
  R1                2                  6
  R2                1                  3
  RX                1                 17

Clustering(63) Variable = 12P LOSS MUTATION ANALYSIS
D63V1, survival
                    sevent
clus2                  0   1
  12P LOSS MUTATED    19  11
  12P LOSS WILD-TYPE 220 127
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
                30                347 
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
                11                127 
$`12P LOSS MUTATED`
TCGA-18-3407 TCGA-22-1016 TCGA-22-5478 TCGA-33-4533 TCGA-33-4587 TCGA-34-2604 
        4.47        27.02         0.79       114.05        54.44        31.50 
TCGA-37-4129 TCGA-37-4130 TCGA-37-4141 TCGA-39-5011 TCGA-43-2581 TCGA-43-5668 
        6.54         8.09         0.39        47.80        38.66        11.47 
TCGA-43-6143 TCGA-43-8118 TCGA-56-5898 TCGA-56-7579 TCGA-56-8624 TCGA-56-A49D 
       12.36         2.93        18.25         1.45         1.18         0.99 
TCGA-56-A4ZK TCGA-60-2722 TCGA-66-2773 TCGA-77-7138 TCGA-77-8008 TCGA-77-8150 
        0.13        29.85         3.02        11.18        86.76        54.41 
TCGA-77-8153 TCGA-85-6798 TCGA-85-8353 TCGA-85-8479 TCGA-85-A50M TCGA-90-A4ED 
       55.33         1.12         1.78         0.72         0.62         8.02 

$`12P LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
       12.16        81.07        79.46         4.80        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       13.02        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       119.54 
TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 
       46.88        99.16        70.13        60.89        34.78        15.55 
TCGA-21-1079 TCGA-21-1080 TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 
       31.69       122.43         9.30       119.80         8.78        31.63 
TCGA-21-5783 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-21-A5DI TCGA-22-0940 
       88.08        41.69        33.93        10.82        32.19        19.99 
TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 
        7.33        14.93         4.31        64.21         1.74        14.10 
TCGA-22-1017 TCGA-22-4591 TCGA-22-4593 TCGA-22-4594 TCGA-22-4595 TCGA-22-4596 
       48.82        20.45        35.08        48.33        24.13         0.56 
TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 
       38.17        34.75        13.12        32.02        19.30         9.53 
TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 
       11.77        31.73        64.90        63.52        14.60        44.22 
TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 
       54.28        71.34        79.20        11.74        18.84        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-22-A5C4 TCGA-33-4532 TCGA-33-4538 
       62.86        56.32        16.60         0.95         7.63        97.94 
TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-4589 
       43.10       173.79       103.53       141.34        14.07        10.98 
TCGA-33-6737 TCGA-33-6738 TCGA-34-2596 TCGA-34-2600 TCGA-34-2605 TCGA-34-2608 
       19.76        26.99         2.63        61.61        28.96        32.84 
TCGA-34-2609 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 
       31.23        50.24        67.79        56.38         9.04        23.24 
TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-34-7107 
       12.00        14.07        30.94        18.12         4.96         1.08 
TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 
        3.95         0.43         0.39         7.46         7.82         6.81 
TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 
        3.39        74.07        44.71        68.58        55.17        70.03 
TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 
       60.76         1.71        24.33         1.94        27.35        36.39 
TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-39-5040 TCGA-43-2576 
       15.58        35.64        35.70        17.88        17.06        40.21 
TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5670 TCGA-43-6647 TCGA-43-6770 
       22.49        27.02        33.07        18.05        24.89        10.19 
TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 
        5.42         3.78         6.97         1.58        66.51         6.64 
TCGA-43-8116 TCGA-43-A474 TCGA-43-A475 TCGA-43-A56V TCGA-46-3768 TCGA-46-6025 
        6.35        11.61         9.73         5.06         9.96        10.65 
TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 
       13.87         0.39         0.39        29.95        17.79         5.42 
TCGA-52-7810 TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 
       30.31         8.75        27.45        28.93         0.10         2.04 
TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 TCGA-56-7580 TCGA-56-7582 
        1.02         0.99         0.43         0.99         1.32         0.85 
TCGA-56-7730 TCGA-56-7822 TCGA-56-8503 TCGA-56-8504 TCGA-56-8622 TCGA-56-8625 
        0.20         0.03         1.35         5.82         1.78         2.07 
TCGA-56-8626 TCGA-56-8628 TCGA-56-8629 TCGA-56-A4BX TCGA-56-A4BY TCGA-56-A4ZJ 
        0.56         0.53         1.12         1.51         0.99         1.02 
TCGA-56-A5DS TCGA-58-8386 TCGA-58-8387 TCGA-58-8388 TCGA-58-8390 TCGA-58-8391 
        0.26         0.03        13.25        12.43        29.95        71.24 
TCGA-58-8392 TCGA-58-8393 TCGA-58-A46J TCGA-58-A46K TCGA-58-A46L TCGA-58-A46M 
       16.47        34.78        64.87        34.36        36.59        23.24 
TCGA-58-A46N TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 
       17.72        21.07         3.58        12.23        10.22        96.82 
TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 
       37.94        92.71        21.70        80.42        49.48        66.51 
TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 
       41.39         9.01        56.91        50.33        35.34        48.49 
TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 
       42.61         3.16        32.28        35.90        23.57        26.79 
TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 
       11.77        16.96        43.10         2.01        21.07         0.99 
TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 
        1.02         2.01         0.92         0.99         0.99        20.98 
TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 
       25.02         0.99         2.01         1.02         2.01         2.01 
TCGA-66-2769 TCGA-66-2770 TCGA-66-2771 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 
        7.07        23.01        19.00         2.01        19.00        12.03 
TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 
        3.98        12.00        24.95         1.94        25.97        40.01 
TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 
       22.98         4.04        22.98         5.03        30.02        10.06 
TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 TCGA-68-7757 
       54.08         4.01        49.05         2.73         6.64         6.94 
TCGA-68-8250 TCGA-68-8251 TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 
        8.02         3.12        29.56        73.08        75.09        23.28 
TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 
       89.95        20.78         0.49        42.25        70.09       106.95 
TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 TCGA-77-8007 TCGA-77-8009 TCGA-77-8128 
        0.16        46.78        15.75         6.51        53.95        37.81 
TCGA-77-8130 TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 
       82.92        12.59        53.92        39.09        17.69       104.09 
TCGA-77-8140 TCGA-77-8143 TCGA-77-8144 TCGA-77-8145 TCGA-77-8148 TCGA-77-8154 
       11.54        26.40        27.39         6.97         9.63        35.90 
TCGA-77-8156 TCGA-77-A5FZ TCGA-77-A5G3 TCGA-77-A5GB TCGA-77-A5GH TCGA-85-6560 
        0.33       126.18       117.57        30.81        23.44         0.36 
TCGA-85-6561 TCGA-85-7696 TCGA-85-7697 TCGA-85-7698 TCGA-85-7699 TCGA-85-7843 
        0.79         0.59         0.33         1.61         0.03         1.15 
TCGA-85-7844 TCGA-85-7950 TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 
        1.25         1.97         0.85         1.97         0.53        16.77 
TCGA-85-8071 TCGA-85-8072 TCGA-85-8276 TCGA-85-8277 TCGA-85-8287 TCGA-85-8288 
       14.07         1.18         0.43         0.36         1.45         1.78 
TCGA-85-8350 TCGA-85-8351 TCGA-85-8352 TCGA-85-8354 TCGA-85-8355 TCGA-85-8481 
        1.97         1.81         2.20         2.01         0.66         0.66 
TCGA-85-8580 TCGA-85-8582 TCGA-85-8664 TCGA-85-8666 TCGA-85-A4CL TCGA-85-A4QR 
       14.60        13.91         0.10        15.58         0.46         0.82 
TCGA-85-A513 TCGA-85-A53L TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 TCGA-90-7769 
        0.79         0.43        24.89         9.50         2.93        11.77 
TCGA-90-7964 TCGA-90-A4EE TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 TCGA-92-8064 
       14.07        10.88         2.70         3.48         4.01         5.26 
TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 TCGA-94-7943 TCGA-96-7544 TCGA-96-7545 
        2.27         2.86         0.16        11.70        39.88        44.15 
TCGA-96-8169 TCGA-96-8170 TCGA-96-A4JK TCGA-96-A4JL TCGA-98-7454 TCGA-98-8020 
        6.18         6.90         8.98         6.02         8.42         2.73 
TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 TCGA-J1-A4AH TCGA-L3-A4E7 TCGA-L3-A524 
       13.58         7.33        10.13         7.30         1.15        14.76 
TCGA-LA-A446 TCGA-MF-A522 TCGA-NC-A5HE TCGA-NC-A5HG TCGA-NC-A5HI 
        1.18         3.02        56.61        50.86        37.32 

  12P LOSS MUTATED 12P LOSS WILD-TYPE 
              0.13               0.03 
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
            114.05             173.79 
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
             8.055             14.070 
[1] "0.1 - 114.0 (8.1)"  "0.0 - 173.8 (14.1)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-22-A5C4         TCGA-33-4532         TCGA-33-4533 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-33-4538         TCGA-33-4547         TCGA-33-4566 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-33-4582         TCGA-33-4583         TCGA-33-4586 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-33-4587         TCGA-33-4589         TCGA-33-6737 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-33-6738         TCGA-34-2596         TCGA-34-2600 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-34-2604         TCGA-34-2605         TCGA-34-2608 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-34-2609         TCGA-34-5231         TCGA-34-5232 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-34-5234         TCGA-34-5236         TCGA-34-5239 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-56-A4BX         TCGA-56-A4BY         TCGA-56-A4ZJ 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-56-A4ZK         TCGA-56-A5DS         TCGA-58-8386 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-58-8387         TCGA-58-8388         TCGA-58-8390 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-58-8391         TCGA-58-8392         TCGA-58-8393 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-58-A46J         TCGA-58-A46K         TCGA-58-A46L 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-58-A46M         TCGA-58-A46N         TCGA-60-2695 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2756 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE"   "12P LOSS MUTATED"   "12P LOSS MUTATED" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2756 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2770         TCGA-66-2771         TCGA-66-2773 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2785         TCGA-66-2786         TCGA-66-2787 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-68-7755         TCGA-68-7756         TCGA-68-7757 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-68-8250         TCGA-68-8251         TCGA-77-6842 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-77-6843         TCGA-77-6844         TCGA-77-6845 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-77-7138         TCGA-77-7139         TCGA-77-7140 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-77-7141         TCGA-77-7142         TCGA-77-7335 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-77-7337         TCGA-77-7338         TCGA-77-7463 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-77-7465         TCGA-77-8007         TCGA-77-8008 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-77-8009         TCGA-77-8128         TCGA-77-8130 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-77-8131         TCGA-77-8133         TCGA-77-8136 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-77-8138         TCGA-77-8139         TCGA-77-8140 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-77-8143         TCGA-77-8144         TCGA-77-8145 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-77-8148         TCGA-77-8150         TCGA-77-8153 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED"   "12P LOSS MUTATED" 
        TCGA-77-8154         TCGA-77-8156         TCGA-77-A5FZ 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-77-A5G3         TCGA-77-A5GB         TCGA-77-A5GH 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-96-8169         TCGA-96-8170         TCGA-96-A4JK 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-96-A4JL         TCGA-98-7454         TCGA-98-8020 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-LA-A446         TCGA-MF-A522         TCGA-NC-A5HE 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D63V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  12P LOSS MUTATED         0        5       15        0         2         3
  12P LOSS WILD-TYPE       1       63      118        1        48        68
                    vv
clus                 STAGE IIIA STAGE IIIB STAGE IV
  12P LOSS MUTATED            5          1        0
  12P LOSS WILD-TYPE         49         19        5
D63V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  12P LOSS MUTATED     8  16   7   0
  12P LOSS WILD-TYPE  85 234  37  19
D63V4, multiclass
    clus
vv   12P LOSS MUTATED 12P LOSS WILD-TYPE
  T1                8                 85
  T2               16                234
  T3                7                 37
  T4                0                 19
                    vv
clus                  N0  N1  N2  N3
  12P LOSS MUTATED    23   7   1   0
  12P LOSS WILD-TYPE 230 102  33   5
D63V5, multiclass
    clus
vv   12P LOSS MUTATED 12P LOSS WILD-TYPE
  N0               23                230
  N1                7                102
  N2                1                 33
  N3                0                  5
                    vv
clus                  M0  M1  MX
  12P LOSS MUTATED    27   0   4
  12P LOSS WILD-TYPE 321   5  43
D63V6, multiclass
    clus
vv   12P LOSS MUTATED 12P LOSS WILD-TYPE
  M0               27                321
  M1                0                  5
  MX                4                 43
D63V7, binary
                    cls
clus                   0   1
  12P LOSS MUTATED    10  21
  12P LOSS WILD-TYPE  91 284
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12P LOSS MUTATED     10   21
  12P LOSS WILD-TYPE   91  284
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  FEMALE               10                 91
  MALE                 21                284
D63V8, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  12P LOSS MUTATED                                       1
  12P LOSS WILD-TYPE                                    11
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  12P LOSS MUTATED                                        1
  12P LOSS WILD-TYPE                                      5
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  12P LOSS MUTATED                                         1
  12P LOSS WILD-TYPE                                       0
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  12P LOSS MUTATED                                                            28
  12P LOSS WILD-TYPE                                                         359
D63V9, multiclass
                                                             clus
vv                                                            12P LOSS MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      1
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                     1
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               28
                                                             clus
vv                                                            12P LOSS WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       11
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                       5
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                      0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                359
D63V10, binary
                    cls
clus                   0   1
  12P LOSS MUTATED     0  31
  12P LOSS WILD-TYPE  12 363
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12P LOSS MUTATED      0   31
  12P LOSS WILD-TYPE   12  363
     clus
vv    12P LOSS MUTATED 12P LOSS WILD-TYPE
  NO                 0                 12
  YES               31                363
D63V11, continuous
D63V12, continuous
                    vv
clus                  R0  R1  R2  RX
  12P LOSS MUTATED    26   1   0   1
  12P LOSS WILD-TYPE 304   7   4  17
D63V13, multiclass
    clus
vv   12P LOSS MUTATED 12P LOSS WILD-TYPE
  R0               26                304
  R1                1                  7
  R2                0                  4
  RX                1                 17

Clustering(64) Variable = 12Q LOSS MUTATION ANALYSIS
D64V1, survival
                    sevent
clus2                  0   1
  12Q LOSS MUTATED    24  13
  12Q LOSS WILD-TYPE 215 125
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                37                340 
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                13                125 
$`12Q LOSS MUTATED`
TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-22-4595 TCGA-22-5478 TCGA-33-4533 
        4.47        81.07        79.46        24.13         0.79       114.05 
TCGA-33-4587 TCGA-34-2604 TCGA-37-4129 TCGA-37-4141 TCGA-43-2581 TCGA-43-5668 
       54.44        31.50         6.54         0.39        38.66        11.47 
TCGA-43-6143 TCGA-43-8118 TCGA-43-A56V TCGA-51-4081 TCGA-52-7810 TCGA-56-5898 
       12.36         2.93         5.06        29.95        30.31        18.25 
TCGA-56-8624 TCGA-56-A49D TCGA-60-2703 TCGA-60-2722 TCGA-60-2723 TCGA-66-2773 
        1.18         0.99        96.82        29.85        35.90         3.02 
TCGA-68-8250 TCGA-77-7138 TCGA-77-8007 TCGA-77-8008 TCGA-77-8131 TCGA-77-8153 
        8.02        11.18         6.51        86.76        12.59        55.33 
TCGA-85-6560 TCGA-85-6798 TCGA-85-7696 TCGA-85-8479 TCGA-85-A50M TCGA-90-A4ED 
        0.36         1.12         0.59         0.72         0.62         8.02 
TCGA-MF-A522 
        3.02 

$`12Q LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 
       12.16         4.80        46.52        11.34        13.02        59.51 
TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 
       28.34        24.92         1.61        43.76         6.15         2.79 
TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 TCGA-21-1072 
       90.51         3.02        27.16       119.54        46.88        99.16 
TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1079 TCGA-21-1080 
       70.13        60.89        34.78        15.55        31.69       122.43 
TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 
        9.30       119.80         8.78        31.63        88.08        41.69 
TCGA-21-5786 TCGA-21-5787 TCGA-21-A5DI TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 
       33.93        10.82        32.19        19.99         7.33        14.93 
TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 
        4.31        64.21         1.74        14.10        27.02        48.82 
TCGA-22-4591 TCGA-22-4593 TCGA-22-4594 TCGA-22-4596 TCGA-22-4599 TCGA-22-4601 
       20.45        35.08        48.33         0.56        38.17        34.75 
TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 
       13.12        32.02        19.30         9.53        11.77        31.73 
TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5479 TCGA-22-5480 
       64.90        63.52        14.60        44.22        54.28        71.34 
TCGA-22-5481 TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 
       79.20        11.74        18.84        30.08        62.86        56.32 
TCGA-22-5492 TCGA-22-A5C4 TCGA-33-4532 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 
       16.60         0.95         7.63        97.94        43.10       173.79 
TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-4589 TCGA-33-6737 TCGA-33-6738 
      103.53       141.34        14.07        10.98        19.76        26.99 
TCGA-34-2596 TCGA-34-2600 TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 
        2.63        61.61        28.96        32.84        31.23        50.24 
TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 
       67.79        56.38         9.04        23.24        12.00        14.07 
TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 
       30.94        18.12         4.96         1.08         3.95         0.43 
TCGA-37-3792 TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 TCGA-37-5819 
        0.39         8.09         7.46         7.82         6.81         3.39 
TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 
       47.80        74.07        44.71        68.58        55.17        70.03 
TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 
       60.76         1.71        24.33         1.94        27.35        36.39 
TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-39-5040 TCGA-43-2576 
       15.58        35.64        35.70        17.88        17.06        40.21 
TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5670 TCGA-43-6647 TCGA-43-6770 
       22.49        27.02        33.07        18.05        24.89        10.19 
TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 
        5.42         3.78         6.97         1.58        66.51         6.64 
TCGA-43-8116 TCGA-43-A474 TCGA-43-A475 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 
        6.35        11.61         9.73         9.96        10.65        13.87 
TCGA-51-4079 TCGA-51-4080 TCGA-52-7622 TCGA-52-7809 TCGA-52-7811 TCGA-52-7812 
        0.39         0.39        17.79         5.42         8.75        27.45 
TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 
       28.93         0.10         2.04         1.02         0.99         0.43 
TCGA-56-7223 TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 TCGA-56-7730 TCGA-56-7822 
        0.99         1.45         1.32         0.85         0.20         0.03 
TCGA-56-8503 TCGA-56-8504 TCGA-56-8622 TCGA-56-8625 TCGA-56-8626 TCGA-56-8628 
        1.35         5.82         1.78         2.07         0.56         0.53 
TCGA-56-8629 TCGA-56-A4BX TCGA-56-A4BY TCGA-56-A4ZJ TCGA-56-A4ZK TCGA-56-A5DS 
        1.12         1.51         0.99         1.02         0.13         0.26 
TCGA-58-8386 TCGA-58-8387 TCGA-58-8388 TCGA-58-8390 TCGA-58-8391 TCGA-58-8392 
        0.03        13.25        12.43        29.95        71.24        16.47 
TCGA-58-8393 TCGA-58-A46J TCGA-58-A46K TCGA-58-A46L TCGA-58-A46M TCGA-58-A46N 
       34.78        64.87        34.36        36.59        23.24        17.72 
TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2704 TCGA-60-2706 
       21.07         3.58        12.23        10.22        37.94        92.71 
TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 
       21.70        80.42        49.48        66.51        41.39         9.01 
TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 
       56.91        50.33        35.34        48.49        42.61         3.16 
TCGA-60-2721 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 
       32.28        23.57        26.79        11.77        16.96        43.10 
TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 
        2.01        21.07         0.99         1.02         2.01         0.92 
TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 
        0.99         0.99        20.98        25.02         0.99         2.01 
TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 TCGA-66-2770 TCGA-66-2771 
        1.02         2.01         2.01         7.07        23.01        19.00 
TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 
        2.01        19.00        12.03         3.98        12.00        24.95 
TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 
        1.94        25.97        40.01        22.98         4.04        22.98 
TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 
        5.03        30.02        10.06        54.08         4.01        49.05 
TCGA-68-7755 TCGA-68-7756 TCGA-68-7757 TCGA-68-8251 TCGA-77-6842 TCGA-77-6843 
        2.73         6.64         6.94         3.12        29.56        73.08 
TCGA-77-6844 TCGA-77-6845 TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 
       75.09        23.28        89.95        20.78         0.49        42.25 
TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 TCGA-77-8009 
       70.09       106.95         0.16        46.78        15.75        53.95 
TCGA-77-8128 TCGA-77-8130 TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 
       37.81        82.92        53.92        39.09        17.69       104.09 
TCGA-77-8140 TCGA-77-8143 TCGA-77-8144 TCGA-77-8145 TCGA-77-8148 TCGA-77-8150 
       11.54        26.40        27.39         6.97         9.63        54.41 
TCGA-77-8154 TCGA-77-8156 TCGA-77-A5FZ TCGA-77-A5G3 TCGA-77-A5GB TCGA-77-A5GH 
       35.90         0.33       126.18       117.57        30.81        23.44 
TCGA-85-6561 TCGA-85-7697 TCGA-85-7698 TCGA-85-7699 TCGA-85-7843 TCGA-85-7844 
        0.79         0.33         1.61         0.03         1.15         1.25 
TCGA-85-7950 TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 
        1.97         0.85         1.97         0.53        16.77        14.07 
TCGA-85-8072 TCGA-85-8276 TCGA-85-8277 TCGA-85-8287 TCGA-85-8288 TCGA-85-8350 
        1.18         0.43         0.36         1.45         1.78         1.97 
TCGA-85-8351 TCGA-85-8352 TCGA-85-8353 TCGA-85-8354 TCGA-85-8355 TCGA-85-8481 
        1.81         2.20         1.78         2.01         0.66         0.66 
TCGA-85-8580 TCGA-85-8582 TCGA-85-8664 TCGA-85-8666 TCGA-85-A4CL TCGA-85-A4QR 
       14.60        13.91         0.10        15.58         0.46         0.82 
TCGA-85-A513 TCGA-85-A53L TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 TCGA-90-7769 
        0.79         0.43        24.89         9.50         2.93        11.77 
TCGA-90-7964 TCGA-90-A4EE TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 TCGA-92-8064 
       14.07        10.88         2.70         3.48         4.01         5.26 
TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 TCGA-94-7943 TCGA-96-7544 TCGA-96-7545 
        2.27         2.86         0.16        11.70        39.88        44.15 
TCGA-96-8169 TCGA-96-8170 TCGA-96-A4JK TCGA-96-A4JL TCGA-98-7454 TCGA-98-8020 
        6.18         6.90         8.98         6.02         8.42         2.73 
TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 TCGA-J1-A4AH TCGA-L3-A4E7 TCGA-L3-A524 
       13.58         7.33        10.13         7.30         1.15        14.76 
TCGA-LA-A446 TCGA-NC-A5HE TCGA-NC-A5HG TCGA-NC-A5HI 
        1.18        56.61        50.86        37.32 

  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
              0.36               0.03 
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
            114.05             173.79 
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
             11.18              14.07 
[1] "0.4 - 114.0 (11.2)" "0.0 - 173.8 (14.1)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED"   "12Q LOSS MUTATED" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-22-A5C4         TCGA-33-4532         TCGA-33-4533 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-33-4538         TCGA-33-4547         TCGA-33-4566 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-33-4582         TCGA-33-4583         TCGA-33-4586 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-33-4587         TCGA-33-4589         TCGA-33-6737 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-33-6738         TCGA-34-2596         TCGA-34-2600 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-34-2604         TCGA-34-2605         TCGA-34-2608 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-34-2609         TCGA-34-5231         TCGA-34-5232 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-34-5234         TCGA-34-5236         TCGA-34-5239 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-34-5240         TCGA-34-5241         TCGA-34-5927 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-34-5928         TCGA-34-5929         TCGA-34-7107 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-3792 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4132 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-37-4133         TCGA-37-4135         TCGA-37-4141 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-37-5819         TCGA-39-5011         TCGA-39-5016 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-39-5019         TCGA-39-5021         TCGA-39-5022 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-39-5024         TCGA-39-5027         TCGA-39-5028 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-39-5029         TCGA-39-5030         TCGA-39-5031 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-39-5034         TCGA-39-5035         TCGA-39-5036 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-39-5037         TCGA-39-5039         TCGA-39-5040 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-43-8118 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-43-A474         TCGA-43-A475         TCGA-43-A56V 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-46-3768         TCGA-46-6025         TCGA-46-6026 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-51-4079         TCGA-51-4080         TCGA-51-4081 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-52-7622         TCGA-52-7809         TCGA-52-7810 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-52-7811         TCGA-52-7812         TCGA-56-1622 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-56-5897         TCGA-56-5898         TCGA-56-6545 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-56-6546         TCGA-56-7221         TCGA-56-7222 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-56-7223         TCGA-56-7579         TCGA-56-7580 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-56-7582         TCGA-56-7730         TCGA-56-7822 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-56-8503         TCGA-56-8504         TCGA-56-8622 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-56-8624         TCGA-56-8625         TCGA-56-8626 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-56-8628         TCGA-56-8629         TCGA-56-A49D 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-56-A4BX         TCGA-56-A4BY         TCGA-56-A4ZJ 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-56-A4ZK         TCGA-56-A5DS         TCGA-58-8386 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-58-8387         TCGA-58-8388         TCGA-58-8390 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-58-8391         TCGA-58-8392         TCGA-58-8393 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-58-A46J         TCGA-58-A46K         TCGA-58-A46L 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-58-A46M         TCGA-58-A46N         TCGA-60-2695 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-60-2696         TCGA-60-2697         TCGA-60-2698 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-60-2703         TCGA-60-2704         TCGA-60-2706 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED"   "12Q LOSS MUTATED" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2756 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2770         TCGA-66-2771         TCGA-66-2773 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2785         TCGA-66-2786         TCGA-66-2787 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-68-7755         TCGA-68-7756         TCGA-68-7757 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-68-8250         TCGA-68-8251         TCGA-77-6842 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-77-6843         TCGA-77-6844         TCGA-77-6845 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-77-7138         TCGA-77-7139         TCGA-77-7140 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-77-7141         TCGA-77-7142         TCGA-77-7335 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-77-7337         TCGA-77-7338         TCGA-77-7463 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-77-7465         TCGA-77-8007         TCGA-77-8008 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED"   "12Q LOSS MUTATED" 
        TCGA-77-8009         TCGA-77-8128         TCGA-77-8130 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-77-8131         TCGA-77-8133         TCGA-77-8136 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-77-8138         TCGA-77-8139         TCGA-77-8140 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-77-8143         TCGA-77-8144         TCGA-77-8145 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-77-8148         TCGA-77-8150         TCGA-77-8153 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-77-8154         TCGA-77-8156         TCGA-77-A5FZ 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-77-A5G3         TCGA-77-A5GB         TCGA-77-A5GH 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-96-8169         TCGA-96-8170         TCGA-96-A4JK 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-96-A4JL         TCGA-98-7454         TCGA-98-8020 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-LA-A446         TCGA-MF-A522         TCGA-NC-A5HE 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED"   "12Q LOSS MUTATED" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
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  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
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"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
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        TCGA-33-6738         TCGA-34-2596         TCGA-34-2600 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-34-2604         TCGA-34-2605         TCGA-34-2608 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-34-2609         TCGA-34-5231         TCGA-34-5232 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-34-5234         TCGA-34-5236         TCGA-34-5239 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-34-5240         TCGA-34-5241         TCGA-34-5927 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-34-5928         TCGA-34-5929         TCGA-34-7107 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-3792 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4132 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-37-4133         TCGA-37-4135         TCGA-37-4141 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-37-5819         TCGA-39-5011         TCGA-39-5016 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-39-5019         TCGA-39-5021         TCGA-39-5022 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-39-5024         TCGA-39-5027         TCGA-39-5028 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-39-5029         TCGA-39-5030         TCGA-39-5031 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-39-5034         TCGA-39-5035         TCGA-39-5036 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-39-5037         TCGA-39-5039         TCGA-39-5040 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-43-8118 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-43-A474         TCGA-43-A475         TCGA-43-A56V 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-46-3768         TCGA-46-6025         TCGA-46-6026 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-51-4079         TCGA-51-4080         TCGA-51-4081 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-52-7622         TCGA-52-7809         TCGA-52-7810 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-52-7811         TCGA-52-7812         TCGA-56-1622 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-56-5897         TCGA-56-5898         TCGA-56-6545 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-56-6546         TCGA-56-7221         TCGA-56-7222 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-56-7223         TCGA-56-7579         TCGA-56-7580 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-56-7582         TCGA-56-7730         TCGA-56-7822 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-56-8503         TCGA-56-8504         TCGA-56-8622 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-56-8624         TCGA-56-8625         TCGA-56-8626 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-56-8628         TCGA-56-8629         TCGA-56-A49D 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-56-A4BX         TCGA-56-A4BY         TCGA-56-A4ZJ 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-56-A4ZK         TCGA-56-A5DS         TCGA-58-8386 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-58-8387         TCGA-58-8388         TCGA-58-8390 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-58-8391         TCGA-58-8392         TCGA-58-8393 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-58-A46J         TCGA-58-A46K         TCGA-58-A46L 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-58-A46M         TCGA-58-A46N         TCGA-60-2695 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-60-2696         TCGA-60-2697         TCGA-60-2698 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-60-2703         TCGA-60-2704         TCGA-60-2706 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED"   "12Q LOSS MUTATED" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2756 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2770         TCGA-66-2771         TCGA-66-2773 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2785         TCGA-66-2786         TCGA-66-2787 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-68-7755         TCGA-68-7756         TCGA-68-7757 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-68-8250         TCGA-68-8251         TCGA-77-6842 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-77-6843         TCGA-77-6844         TCGA-77-6845 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-77-7138         TCGA-77-7139         TCGA-77-7140 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-77-7141         TCGA-77-7142         TCGA-77-7335 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-77-7337         TCGA-77-7338         TCGA-77-7463 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-77-7465         TCGA-77-8007         TCGA-77-8008 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED"   "12Q LOSS MUTATED" 
        TCGA-77-8009         TCGA-77-8128         TCGA-77-8130 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-77-8131         TCGA-77-8133         TCGA-77-8136 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-77-8138         TCGA-77-8139         TCGA-77-8140 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-77-8143         TCGA-77-8144         TCGA-77-8145 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-77-8148         TCGA-77-8150         TCGA-77-8153 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-77-8154         TCGA-77-8156         TCGA-77-A5FZ 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-77-A5G3         TCGA-77-A5GB         TCGA-77-A5GH 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-96-8169         TCGA-96-8170         TCGA-96-A4JK 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-96-A4JL         TCGA-98-7454         TCGA-98-8020 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-LA-A446         TCGA-MF-A522         TCGA-NC-A5HE 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
[1] "hr=" "1"  
D64V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  12Q LOSS MUTATED         0        5       17        0         2         7
  12Q LOSS WILD-TYPE       1       63      116        1        48        64
                    vv
clus                 STAGE IIIA STAGE IIIB STAGE IV
  12Q LOSS MUTATED            5          1        0
  12Q LOSS WILD-TYPE         49         19        5
D64V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  12Q LOSS MUTATED     9  23   6   0
  12Q LOSS WILD-TYPE  84 227  38  19
D64V4, multiclass
    clus
vv   12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  T1                9                 84
  T2               23                227
  T3                6                 38
  T4                0                 19
                    vv
clus                  N0  N1  N2  N3
  12Q LOSS MUTATED    26   8   3   0
  12Q LOSS WILD-TYPE 227 101  31   5
D64V5, multiclass
    clus
vv   12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  N0               26                227
  N1                8                101
  N2                3                 31
  N3                0                  5
                    vv
clus                  M0  M1  MX
  12Q LOSS MUTATED    31   0   6
  12Q LOSS WILD-TYPE 317   5  41
D64V6, multiclass
    clus
vv   12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  M0               31                317
  M1                0                  5
  MX                6                 41
D64V7, binary
                    cls
clus                   0   1
  12Q LOSS MUTATED    11  27
  12Q LOSS WILD-TYPE  90 278
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12Q LOSS MUTATED     11   27
  12Q LOSS WILD-TYPE   90  278
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  FEMALE               11                 90
  MALE                 27                278
D64V8, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  12Q LOSS MUTATED                                       2
  12Q LOSS WILD-TYPE                                    10
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  12Q LOSS MUTATED                                        1
  12Q LOSS WILD-TYPE                                      5
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  12Q LOSS MUTATED                                         1
  12Q LOSS WILD-TYPE                                       0
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  12Q LOSS MUTATED                                                            34
  12Q LOSS WILD-TYPE                                                         353
D64V9, multiclass
                                                             clus
vv                                                            12Q LOSS MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      2
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                     1
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               34
                                                             clus
vv                                                            12Q LOSS WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       10
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                       5
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                      0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                353
D64V10, binary
                    cls
clus                   0   1
  12Q LOSS MUTATED     1  37
  12Q LOSS WILD-TYPE  11 357
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12Q LOSS MUTATED      1   37
  12Q LOSS WILD-TYPE   11  357
     clus
vv    12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  NO                 1                 11
  YES               37                357
D64V11, continuous
D64V12, continuous
                    vv
clus                  R0  R1  R2  RX
  12Q LOSS MUTATED    30   0   0   1
  12Q LOSS WILD-TYPE 300   8   4  17
D64V13, multiclass
    clus
vv   12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  R0               30                300
  R1                0                  8
  R2                0                  4
  RX                1                 17

Clustering(65) Variable = 13Q LOSS MUTATION ANALYSIS
D65V1, survival
                    sevent
clus2                  0   1
  13Q LOSS MUTATED   149  81
  13Q LOSS WILD-TYPE  90  57
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
               230                147 
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
                81                 57 
$`13Q LOSS MUTATED`
TCGA-18-3409 TCGA-18-3410 TCGA-18-3415 TCGA-18-3416 TCGA-18-3419 TCGA-18-3421 
       79.46         4.80        59.51        28.34         1.61        43.76 
TCGA-18-4083 TCGA-18-4721 TCGA-21-1070 TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 
        6.15        90.51       119.54        46.88        99.16        70.13 
TCGA-21-1076 TCGA-21-1080 TCGA-21-1083 TCGA-21-5786 TCGA-21-5787 TCGA-21-A5DI 
       60.89       122.43         8.78        33.93        10.82        32.19 
TCGA-22-0940 TCGA-22-1002 TCGA-22-1011 TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 
       19.99         4.31         1.74        27.02        48.82        20.45 
TCGA-22-4593 TCGA-22-4596 TCGA-22-4601 TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 
       35.08         0.56        34.75        13.12        32.02        19.30 
TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5477 TCGA-22-5478 
       11.77        31.73        64.90        63.52        44.22         0.79 
TCGA-22-5481 TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 TCGA-22-5491 TCGA-22-5492 
       79.20        11.74        18.84        30.08        56.32        16.60 
TCGA-22-A5C4 TCGA-33-4538 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-4587 
        0.95        97.94       103.53       141.34        14.07        54.44 
TCGA-33-4589 TCGA-33-6737 TCGA-33-6738 TCGA-34-2596 TCGA-34-2600 TCGA-34-2604 
       10.98        19.76        26.99         2.63        61.61        31.50 
TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 TCGA-34-5232 TCGA-34-5928 
       28.96        32.84        31.23        50.24        67.79        18.12 
TCGA-34-5929 TCGA-34-7107 TCGA-37-3792 TCGA-37-4129 TCGA-37-4132 TCGA-37-4133 
        4.96         1.08         0.39         6.54         7.46         7.82 
TCGA-37-4135 TCGA-37-5819 TCGA-39-5011 TCGA-39-5016 TCGA-39-5022 TCGA-39-5028 
        6.81         3.39        47.80        74.07        55.17         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5036 TCGA-43-2578 TCGA-43-2581 
       24.33         1.94        27.35        35.64        22.49        38.66 
TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 
       27.02        33.07        11.47        12.36        24.89        10.19 
TCGA-43-7656 TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 TCGA-43-A474 TCGA-46-6025 
        6.97        66.51         6.64         6.35        11.61        10.65 
TCGA-51-4079 TCGA-52-7622 TCGA-52-7809 TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 
        0.39        17.79         5.42         8.75        27.45        28.93 
TCGA-56-6546 TCGA-56-7222 TCGA-56-7579 TCGA-56-7582 TCGA-56-7730 TCGA-56-8624 
        1.02         0.43         1.45         0.85         0.20         1.18 
TCGA-56-8625 TCGA-56-8626 TCGA-56-8628 TCGA-56-8629 TCGA-56-A49D TCGA-56-A4BY 
        2.07         0.56         0.53         1.12         0.99         0.99 
TCGA-58-8386 TCGA-58-8387 TCGA-58-8390 TCGA-58-8391 TCGA-58-8393 TCGA-58-A46J 
        0.03        13.25        29.95        71.24        34.78        64.87 
TCGA-58-A46K TCGA-58-A46M TCGA-60-2696 TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 
       34.36        23.24         3.58        96.82        37.94        92.71 
TCGA-60-2707 TCGA-60-2708 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 
       21.70        80.42        66.51        41.39         9.01        56.91 
TCGA-60-2714 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 
       50.33        42.61         3.16        32.28        29.85        35.90 
TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2753 
       23.57        26.79        11.77        16.96        43.10         1.02 
TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 
        2.01         0.92         0.99        20.98        25.02         0.99 
TCGA-66-2767 TCGA-66-2768 TCGA-66-2771 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 
        2.01         2.01        19.00         2.01        19.00        12.03 
TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 
        3.98        12.00        24.95         1.94        25.97        40.01 
TCGA-66-2788 TCGA-66-2790 TCGA-66-2792 TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 
       22.98        22.98        30.02        49.05         2.73         6.64 
TCGA-68-7757 TCGA-68-8250 TCGA-68-8251 TCGA-77-6842 TCGA-77-6844 TCGA-77-7139 
        6.94         8.02         3.12        29.56        75.09        89.95 
TCGA-77-7140 TCGA-77-7141 TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 
       20.78         0.49        70.09       106.95         0.16        46.78 
TCGA-77-7465 TCGA-77-8007 TCGA-77-8009 TCGA-77-8130 TCGA-77-8131 TCGA-77-8138 
       15.75         6.51        53.95        82.92        12.59        17.69 
TCGA-77-8139 TCGA-77-8143 TCGA-77-8144 TCGA-77-8148 TCGA-77-8150 TCGA-77-8153 
      104.09        26.40        27.39         9.63        54.41        55.33 
TCGA-77-8154 TCGA-77-A5G3 TCGA-85-6561 TCGA-85-7697 TCGA-85-7698 TCGA-85-7844 
       35.90       117.57         0.79         0.33         1.61         1.25 
TCGA-85-7950 TCGA-85-8049 TCGA-85-8070 TCGA-85-8071 TCGA-85-8277 TCGA-85-8287 
        1.97         1.97        16.77        14.07         0.36         1.45 
TCGA-85-8288 TCGA-85-8351 TCGA-85-8352 TCGA-85-8353 TCGA-85-8580 TCGA-85-8664 
        1.78         1.81         2.20         1.78        14.60         0.10 
TCGA-85-A4QR TCGA-85-A53L TCGA-90-7766 TCGA-90-7767 TCGA-90-7769 TCGA-90-7964 
        0.82         0.43         9.50         2.93        11.77        14.07 
TCGA-90-A4EE TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 TCGA-92-8064 TCGA-94-7557 
       10.88         2.70         3.48         4.01         5.26         0.16 
TCGA-96-7544 TCGA-96-7545 TCGA-96-8169 TCGA-96-A4JK TCGA-98-7454 TCGA-98-8021 
       39.88        44.15         6.18         8.98         8.42        13.58 
TCGA-98-8022 TCGA-98-8023 TCGA-J1-A4AH TCGA-L3-A4E7 TCGA-L3-A524 TCGA-NC-A5HE 
        7.33        10.13         7.30         1.15        14.76        56.61 
TCGA-NC-A5HG TCGA-NC-A5HI 
       50.86        37.32 

$`13Q LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3411 TCGA-18-3412 TCGA-18-3414 
       12.16         4.47        81.07        46.52        11.34        13.02 
TCGA-18-3417 TCGA-18-4086 TCGA-18-5592 TCGA-18-5595 TCGA-21-1077 TCGA-21-1078 
       24.92         2.79         3.02        27.16        34.78        15.55 
TCGA-21-1079 TCGA-21-1081 TCGA-21-1082 TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 
       31.69         9.30       119.80        31.63        88.08        41.69 
TCGA-22-0944 TCGA-22-1000 TCGA-22-1005 TCGA-22-1012 TCGA-22-4594 TCGA-22-4595 
        7.33        14.93        64.21        14.10        48.33        24.13 
TCGA-22-4599 TCGA-22-4609 TCGA-22-5474 TCGA-22-5479 TCGA-22-5480 TCGA-22-5489 
       38.17         9.53        14.60        54.28        71.34        62.86 
TCGA-33-4532 TCGA-33-4533 TCGA-33-4547 TCGA-33-4566 TCGA-34-5234 TCGA-34-5236 
        7.63       114.05        43.10       173.79        56.38         9.04 
TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-37-3783 TCGA-37-3789 
       23.24        12.00        14.07        30.94         3.95         0.43 
TCGA-37-4130 TCGA-37-4141 TCGA-39-5019 TCGA-39-5021 TCGA-39-5024 TCGA-39-5027 
        8.09         0.39        44.71        68.58        70.03        60.76 
TCGA-39-5034 TCGA-39-5035 TCGA-39-5037 TCGA-39-5039 TCGA-39-5040 TCGA-43-2576 
       36.39        15.58        35.70        17.88        17.06        40.21 
TCGA-43-5670 TCGA-43-6771 TCGA-43-6773 TCGA-43-7657 TCGA-43-8118 TCGA-43-A475 
       18.05         5.42         3.78         1.58         2.93         9.73 
TCGA-43-A56V TCGA-46-3768 TCGA-46-6026 TCGA-51-4080 TCGA-51-4081 TCGA-52-7810 
        5.06         9.96        13.87         0.39        29.95        30.31 
TCGA-56-5897 TCGA-56-5898 TCGA-56-6545 TCGA-56-7221 TCGA-56-7223 TCGA-56-7580 
        0.10        18.25         2.04         0.99         0.99         1.32 
TCGA-56-7822 TCGA-56-8503 TCGA-56-8504 TCGA-56-8622 TCGA-56-A4BX TCGA-56-A4ZJ 
        0.03         1.35         5.82         1.78         1.51         1.02 
TCGA-56-A4ZK TCGA-56-A5DS TCGA-58-8388 TCGA-58-8392 TCGA-58-A46L TCGA-58-A46N 
        0.13         0.26        12.43        16.47        36.59        17.72 
TCGA-60-2695 TCGA-60-2697 TCGA-60-2698 TCGA-60-2709 TCGA-60-2715 TCGA-60-2716 
       21.07        12.23        10.22        49.48        35.34        48.49 
TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 TCGA-66-2757 TCGA-66-2765 TCGA-66-2766 
        2.01        21.07         0.99         0.99         2.01         1.02 
TCGA-66-2769 TCGA-66-2770 TCGA-66-2773 TCGA-66-2789 TCGA-66-2791 TCGA-66-2793 
        7.07        23.01         3.02         4.04         5.03        10.06 
TCGA-66-2794 TCGA-66-2795 TCGA-77-6843 TCGA-77-6845 TCGA-77-7138 TCGA-77-7142 
       54.08         4.01        73.08        23.28        11.18        42.25 
TCGA-77-8008 TCGA-77-8128 TCGA-77-8133 TCGA-77-8136 TCGA-77-8140 TCGA-77-8145 
       86.76        37.81        53.92        39.09        11.54         6.97 
TCGA-77-8156 TCGA-77-A5FZ TCGA-77-A5GB TCGA-77-A5GH TCGA-85-6560 TCGA-85-6798 
        0.33       126.18        30.81        23.44         0.36         1.12 
TCGA-85-7696 TCGA-85-7699 TCGA-85-7843 TCGA-85-8048 TCGA-85-8052 TCGA-85-8072 
        0.59         0.03         1.15         0.85         0.53         1.18 
TCGA-85-8276 TCGA-85-8350 TCGA-85-8354 TCGA-85-8355 TCGA-85-8479 TCGA-85-8481 
        0.43         1.97         2.01         0.66         0.72         0.66 
TCGA-85-8582 TCGA-85-8666 TCGA-85-A4CL TCGA-85-A50M TCGA-85-A513 TCGA-90-6837 
       13.91        15.58         0.46         0.62         0.79        24.89 
TCGA-90-A4ED TCGA-92-8065 TCGA-94-7033 TCGA-94-7943 TCGA-96-8170 TCGA-96-A4JL 
        8.02         2.27         2.86        11.70         6.90         6.02 
TCGA-98-8020 TCGA-LA-A446 TCGA-MF-A522 
        2.73         1.18         3.02 

  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
              0.03               0.03 
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
            141.34             173.79 
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
            16.685             11.340 
[1] "0.0 - 141.3 (16.7)" "0.0 - 173.8 (11.3)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-22-A5C4         TCGA-33-4532         TCGA-33-4533 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-33-4538         TCGA-33-4547         TCGA-33-4566 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-33-4582         TCGA-33-4583         TCGA-33-4586 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-33-4587         TCGA-33-4589         TCGA-33-6737 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-33-6738         TCGA-34-2596         TCGA-34-2600 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-34-2604         TCGA-34-2605         TCGA-34-2608 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-34-2609         TCGA-34-5231         TCGA-34-5232 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-34-5234         TCGA-34-5236         TCGA-34-5239 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-34-5240         TCGA-34-5241         TCGA-34-5927 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-34-5928         TCGA-34-5929         TCGA-34-7107 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-3792 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4132 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-37-4133         TCGA-37-4135         TCGA-37-4141 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-37-5819         TCGA-39-5011         TCGA-39-5016 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-39-5019         TCGA-39-5021         TCGA-39-5022 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-39-5024         TCGA-39-5027         TCGA-39-5028 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-39-5029         TCGA-39-5030         TCGA-39-5031 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-39-5034         TCGA-39-5035         TCGA-39-5036 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-39-5037         TCGA-39-5039         TCGA-39-5040 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-43-8115         TCGA-43-8116         TCGA-43-8118 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-43-A474         TCGA-43-A475         TCGA-43-A56V 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-46-3768         TCGA-46-6025         TCGA-46-6026 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-51-4079         TCGA-51-4080         TCGA-51-4081 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-52-7622         TCGA-52-7809         TCGA-52-7810 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-52-7811         TCGA-52-7812         TCGA-56-1622 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-56-5897         TCGA-56-5898         TCGA-56-6545 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-56-6546         TCGA-56-7221         TCGA-56-7222 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-56-7223         TCGA-56-7579         TCGA-56-7580 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-56-7582         TCGA-56-7730         TCGA-56-7822 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-56-8503         TCGA-56-8504         TCGA-56-8622 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-56-8624         TCGA-56-8625         TCGA-56-8626 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-56-8628         TCGA-56-8629         TCGA-56-A49D 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-56-A4BX         TCGA-56-A4BY         TCGA-56-A4ZJ 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-56-A4ZK         TCGA-56-A5DS         TCGA-58-8386 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-58-8387         TCGA-58-8388         TCGA-58-8390 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-58-8391         TCGA-58-8392         TCGA-58-8393 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-58-A46J         TCGA-58-A46K         TCGA-58-A46L 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-58-A46M         TCGA-58-A46N         TCGA-60-2695 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-60-2696         TCGA-60-2697         TCGA-60-2698 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-60-2703         TCGA-60-2704         TCGA-60-2706 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2756 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-66-2770         TCGA-66-2771         TCGA-66-2773 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-66-2785         TCGA-66-2786         TCGA-66-2787 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
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  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-96-8169         TCGA-96-8170         TCGA-96-A4JK 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-96-A4JL         TCGA-98-7454         TCGA-98-8020 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-LA-A446         TCGA-MF-A522         TCGA-NC-A5HE 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-22-A5C4         TCGA-33-4532         TCGA-33-4533 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-33-4538         TCGA-33-4547         TCGA-33-4566 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-33-4582         TCGA-33-4583         TCGA-33-4586 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-33-4587         TCGA-33-4589         TCGA-33-6737 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-33-6738         TCGA-34-2596         TCGA-34-2600 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-34-2604         TCGA-34-2605         TCGA-34-2608 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-34-2609         TCGA-34-5231         TCGA-34-5232 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-34-5234         TCGA-34-5236         TCGA-34-5239 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-34-5240         TCGA-34-5241         TCGA-34-5927 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-34-5928         TCGA-34-5929         TCGA-34-7107 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-3792 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4132 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-37-4133         TCGA-37-4135         TCGA-37-4141 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-37-5819         TCGA-39-5011         TCGA-39-5016 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-39-5019         TCGA-39-5021         TCGA-39-5022 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-39-5024         TCGA-39-5027         TCGA-39-5028 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-39-5029         TCGA-39-5030         TCGA-39-5031 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-39-5034         TCGA-39-5035         TCGA-39-5036 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-39-5037         TCGA-39-5039         TCGA-39-5040 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-43-8115         TCGA-43-8116         TCGA-43-8118 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-43-A474         TCGA-43-A475         TCGA-43-A56V 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-46-3768         TCGA-46-6025         TCGA-46-6026 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-51-4079         TCGA-51-4080         TCGA-51-4081 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-52-7622         TCGA-52-7809         TCGA-52-7810 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-52-7811         TCGA-52-7812         TCGA-56-1622 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-56-5897         TCGA-56-5898         TCGA-56-6545 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-56-6546         TCGA-56-7221         TCGA-56-7222 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-56-7223         TCGA-56-7579         TCGA-56-7580 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-56-7582         TCGA-56-7730         TCGA-56-7822 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-56-8503         TCGA-56-8504         TCGA-56-8622 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-56-8624         TCGA-56-8625         TCGA-56-8626 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-56-8628         TCGA-56-8629         TCGA-56-A49D 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-56-A4BX         TCGA-56-A4BY         TCGA-56-A4ZJ 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-56-A4ZK         TCGA-56-A5DS         TCGA-58-8386 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-58-8387         TCGA-58-8388         TCGA-58-8390 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-58-8391         TCGA-58-8392         TCGA-58-8393 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-58-A46J         TCGA-58-A46K         TCGA-58-A46L 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-58-A46M         TCGA-58-A46N         TCGA-60-2695 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-60-2696         TCGA-60-2697         TCGA-60-2698 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-60-2703         TCGA-60-2704         TCGA-60-2706 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2756 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-66-2770         TCGA-66-2771         TCGA-66-2773 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-66-2785         TCGA-66-2786         TCGA-66-2787 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-68-7755         TCGA-68-7756         TCGA-68-7757 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-68-8250         TCGA-68-8251         TCGA-77-6842 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-77-6843         TCGA-77-6844         TCGA-77-6845 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-77-7138         TCGA-77-7139         TCGA-77-7140 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-77-7141         TCGA-77-7142         TCGA-77-7335 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-77-7337         TCGA-77-7338         TCGA-77-7463 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-77-7465         TCGA-77-8007         TCGA-77-8008 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-77-8009         TCGA-77-8128         TCGA-77-8130 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-77-8131         TCGA-77-8133         TCGA-77-8136 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-77-8138         TCGA-77-8139         TCGA-77-8140 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-77-8143         TCGA-77-8144         TCGA-77-8145 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-77-8148         TCGA-77-8150         TCGA-77-8153 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-77-8154         TCGA-77-8156         TCGA-77-A5FZ 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-77-A5G3         TCGA-77-A5GB         TCGA-77-A5GH 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-96-8169         TCGA-96-8170         TCGA-96-A4JK 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-96-A4JL         TCGA-98-7454         TCGA-98-8020 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-LA-A446         TCGA-MF-A522         TCGA-NC-A5HE 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
[1] "hr=" "1.3"
D65V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  13Q LOSS MUTATED         1       40       77        1        33        46
  13Q LOSS WILD-TYPE       0       28       56        0        17        25
                    vv
clus                 STAGE IIIA STAGE IIIB STAGE IV
  13Q LOSS MUTATED           34          9        2
  13Q LOSS WILD-TYPE         20         11        3
D65V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  13Q LOSS MUTATED    56 157  23   9
  13Q LOSS WILD-TYPE  37  93  21  10
D65V4, multiclass
    clus
vv   13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  T1               56                 37
  T2              157                 93
  T3               23                 21
  T4                9                 10
                    vv
clus                  N0  N1  N2  N3
  13Q LOSS MUTATED   149  71  20   3
  13Q LOSS WILD-TYPE 104  38  14   2
D65V5, multiclass
    clus
vv   13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  N0              149                104
  N1               71                 38
  N2               20                 14
  N3                3                  2
                    vv
clus                  M0  M1  MX
  13Q LOSS MUTATED   212   2  29
  13Q LOSS WILD-TYPE 136   3  18
D65V6, multiclass
    clus
vv   13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  M0              212                136
  M1                2                  3
  MX               29                 18
D65V7, binary
                    cls
clus                   0   1
  13Q LOSS MUTATED    63 182
  13Q LOSS WILD-TYPE  38 123
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  13Q LOSS MUTATED     63  182
  13Q LOSS WILD-TYPE   38  123
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  FEMALE               63                 38
  MALE                182                123
D65V8, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  13Q LOSS MUTATED                                       6
  13Q LOSS WILD-TYPE                                     6
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  13Q LOSS MUTATED                                        0
  13Q LOSS WILD-TYPE                                      6
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  13Q LOSS MUTATED                                         1
  13Q LOSS WILD-TYPE                                       0
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  13Q LOSS MUTATED                                                           238
  13Q LOSS WILD-TYPE                                                         149
D65V9, multiclass
                                                             clus
vv                                                            13Q LOSS MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      6
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                     0
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              238
                                                             clus
vv                                                            13Q LOSS WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                        6
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                       6
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                      0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                149
D65V10, binary
                    cls
clus                   0   1
  13Q LOSS MUTATED     7 238
  13Q LOSS WILD-TYPE   5 156
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  13Q LOSS MUTATED      7  238
  13Q LOSS WILD-TYPE    5  156
     clus
vv    13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  NO                 7                  5
  YES              238                156
D65V11, continuous
D65V12, continuous
                    vv
clus                  R0  R1  R2  RX
  13Q LOSS MUTATED   200   3   3  11
  13Q LOSS WILD-TYPE 130   5   1   7
D65V13, multiclass
    clus
vv   13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  R0              200                130
  R1                3                  5
  R2                3                  1
  RX               11                  7

Clustering(66) Variable = 14Q LOSS MUTATION ANALYSIS
D66V1, survival
                    sevent
clus2                  0   1
  14Q LOSS MUTATED    80  48
  14Q LOSS WILD-TYPE 159  90
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
               128                249 
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
                48                 90 
$`14Q LOSS MUTATED`
TCGA-18-3410 TCGA-18-4083 TCGA-18-4086 TCGA-21-1071 TCGA-21-1083 TCGA-21-5784 
        4.80         6.15         2.79        46.88         8.78        41.69 
TCGA-22-0940 TCGA-22-1012 TCGA-22-1016 TCGA-22-4596 TCGA-22-4601 TCGA-22-4613 
       19.99        14.10        27.02         0.56        34.75        11.77 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5480 TCGA-22-5481 TCGA-22-5483 
       63.52        14.60        44.22        71.34        79.20        18.84 
TCGA-22-5491 TCGA-33-4583 TCGA-33-4586 TCGA-33-4587 TCGA-34-2596 TCGA-34-2600 
       56.32       141.34        14.07        54.44         2.63        61.61 
TCGA-34-2604 TCGA-34-2605 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-4130 
       31.50        28.96        30.94        18.12         4.96         8.09 
TCGA-37-4133 TCGA-37-4135 TCGA-39-5016 TCGA-39-5021 TCGA-39-5024 TCGA-39-5030 
        7.82         6.81        74.07        68.58        70.03         1.94 
TCGA-39-5035 TCGA-39-5040 TCGA-43-3394 TCGA-43-6770 TCGA-43-7656 TCGA-43-7657 
       15.58        17.06        27.02        10.19         6.97         1.58 
TCGA-43-7658 TCGA-43-8116 TCGA-43-A475 TCGA-46-3768 TCGA-46-6026 TCGA-51-4079 
       66.51         6.35         9.73         9.96        13.87         0.39 
TCGA-52-7809 TCGA-56-5897 TCGA-56-7582 TCGA-56-8503 TCGA-56-A4BY TCGA-58-8387 
        5.42         0.10         0.85         1.35         0.99        13.25 
TCGA-58-8388 TCGA-58-8390 TCGA-58-8391 TCGA-58-A46J TCGA-58-A46K TCGA-60-2695 
       12.43        29.95        71.24        64.87        34.36        21.07 
TCGA-60-2704 TCGA-60-2709 TCGA-60-2710 TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 
       37.94        49.48        66.51         9.01        56.91        50.33 
TCGA-60-2723 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2753 TCGA-66-2754 
       35.90        26.79        11.77        16.96         1.02         2.01 
TCGA-66-2755 TCGA-66-2757 TCGA-66-2758 TCGA-66-2769 TCGA-66-2770 TCGA-66-2773 
        0.92         0.99        20.98         7.07        23.01         3.02 
TCGA-66-2786 TCGA-66-2787 TCGA-66-2795 TCGA-68-7757 TCGA-68-8250 TCGA-68-8251 
       25.97        40.01         4.01         6.94         8.02         3.12 
TCGA-77-6842 TCGA-77-6843 TCGA-77-7139 TCGA-77-7141 TCGA-77-7338 TCGA-77-7465 
       29.56        73.08        89.95         0.49         0.16        15.75 
TCGA-77-8008 TCGA-77-8009 TCGA-77-8140 TCGA-77-8156 TCGA-77-A5GH TCGA-85-6560 
       86.76        53.95        11.54         0.33        23.44         0.36 
TCGA-85-6798 TCGA-85-7843 TCGA-85-7844 TCGA-85-7950 TCGA-85-8048 TCGA-85-8049 
        1.12         1.15         1.25         1.97         0.85         1.97 
TCGA-85-8052 TCGA-85-8070 TCGA-85-8072 TCGA-85-8277 TCGA-85-8287 TCGA-85-8288 
        0.53        16.77         1.18         0.36         1.45         1.78 
TCGA-85-8352 TCGA-85-8580 TCGA-85-8664 TCGA-85-A4CL TCGA-85-A513 TCGA-90-7766 
        2.20        14.60         0.10         0.46         0.79         9.50 
TCGA-90-7767 TCGA-90-7769 TCGA-90-A4ED TCGA-90-A4EE TCGA-94-7557 TCGA-94-7943 
        2.93        11.77         8.02        10.88         0.16        11.70 
TCGA-96-7545 TCGA-96-A4JL TCGA-98-7454 TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 
       44.15         6.02         8.42        13.58         7.33        10.13 
TCGA-LA-A446 TCGA-NC-A5HE 
        1.18        56.61 

$`14Q LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07        79.46        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       13.02        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1072 TCGA-21-1075 
       90.51         3.02        27.16       119.54        99.16        70.13 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1079 TCGA-21-1080 TCGA-21-1081 
       60.89        34.78        15.55        31.69       122.43         9.30 
TCGA-21-1082 TCGA-21-5782 TCGA-21-5783 TCGA-21-5786 TCGA-21-5787 TCGA-21-A5DI 
      119.80        31.63        88.08        33.93        10.82        32.19 
TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 TCGA-22-1017 
        7.33        14.93         4.31        64.21         1.74        48.82 
TCGA-22-4591 TCGA-22-4593 TCGA-22-4594 TCGA-22-4595 TCGA-22-4599 TCGA-22-4604 
       20.45        35.08        48.33        24.13        38.17        13.12 
TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 TCGA-22-5471 TCGA-22-5472 TCGA-22-5478 
       32.02        19.30         9.53        31.73        64.90         0.79 
TCGA-22-5479 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5492 TCGA-22-A5C4 
       54.28        11.74        30.08        62.86        16.60         0.95 
TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 
        7.63       114.05        97.94        43.10       173.79       103.53 
TCGA-33-4589 TCGA-33-6737 TCGA-33-6738 TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 
       10.98        19.76        26.99        32.84        31.23        50.24 
TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 
       67.79        56.38         9.04        23.24        12.00        14.07 
TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 TCGA-37-4132 
        1.08         3.95         0.43         0.39         6.54         7.46 
TCGA-37-4141 TCGA-37-5819 TCGA-39-5011 TCGA-39-5019 TCGA-39-5022 TCGA-39-5027 
        0.39         3.39        47.80        44.71        55.17        60.76 
TCGA-39-5028 TCGA-39-5029 TCGA-39-5031 TCGA-39-5034 TCGA-39-5036 TCGA-39-5037 
        1.71        24.33        27.35        36.39        35.64        35.70 
TCGA-39-5039 TCGA-43-2576 TCGA-43-2578 TCGA-43-2581 TCGA-43-3920 TCGA-43-5668 
       17.88        40.21        22.49        38.66        33.07        11.47 
TCGA-43-5670 TCGA-43-6143 TCGA-43-6647 TCGA-43-6771 TCGA-43-6773 TCGA-43-8115 
       18.05        12.36        24.89         5.42         3.78         6.64 
TCGA-43-8118 TCGA-43-A474 TCGA-43-A56V TCGA-46-6025 TCGA-51-4080 TCGA-51-4081 
        2.93        11.61         5.06        10.65         0.39        29.95 
TCGA-52-7622 TCGA-52-7810 TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 TCGA-56-5898 
       17.79        30.31         8.75        27.45        28.93        18.25 
TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 
        2.04         1.02         0.99         0.43         0.99         1.45 
TCGA-56-7580 TCGA-56-7730 TCGA-56-7822 TCGA-56-8504 TCGA-56-8622 TCGA-56-8624 
        1.32         0.20         0.03         5.82         1.78         1.18 
TCGA-56-8625 TCGA-56-8626 TCGA-56-8628 TCGA-56-8629 TCGA-56-A49D TCGA-56-A4BX 
        2.07         0.56         0.53         1.12         0.99         1.51 
TCGA-56-A4ZJ TCGA-56-A4ZK TCGA-56-A5DS TCGA-58-8386 TCGA-58-8392 TCGA-58-8393 
        1.02         0.13         0.26         0.03        16.47        34.78 
TCGA-58-A46L TCGA-58-A46M TCGA-58-A46N TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 
       36.59        23.24        17.72         3.58        12.23        10.22 
TCGA-60-2703 TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 TCGA-60-2711 TCGA-60-2715 
       96.82        92.71        21.70        80.42        41.39        35.34 
TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2724 
       48.49        42.61         3.16        32.28        29.85        23.57 
TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 TCGA-66-2756 TCGA-66-2759 
       43.10         2.01        21.07         0.99         0.99        25.02 
TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2771 
        0.99         2.01         1.02         2.01         2.01        19.00 
TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 
        2.01        19.00        12.03         3.98        12.00        24.95 
TCGA-66-2785 TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 TCGA-66-2792 
        1.94        22.98         4.04        22.98         5.03        30.02 
TCGA-66-2793 TCGA-66-2794 TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 TCGA-77-6844 
       10.06        54.08        49.05         2.73         6.64        75.09 
TCGA-77-6845 TCGA-77-7138 TCGA-77-7140 TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 
       23.28        11.18        20.78        42.25        70.09       106.95 
TCGA-77-7463 TCGA-77-8007 TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 TCGA-77-8133 
       46.78         6.51        37.81        82.92        12.59        53.92 
TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 TCGA-77-8143 TCGA-77-8144 TCGA-77-8145 
       39.09        17.69       104.09        26.40        27.39         6.97 
TCGA-77-8148 TCGA-77-8150 TCGA-77-8153 TCGA-77-8154 TCGA-77-A5FZ TCGA-77-A5G3 
        9.63        54.41        55.33        35.90       126.18       117.57 
TCGA-77-A5GB TCGA-85-6561 TCGA-85-7696 TCGA-85-7697 TCGA-85-7698 TCGA-85-7699 
       30.81         0.79         0.59         0.33         1.61         0.03 
TCGA-85-8071 TCGA-85-8276 TCGA-85-8350 TCGA-85-8351 TCGA-85-8353 TCGA-85-8354 
       14.07         0.43         1.97         1.81         1.78         2.01 
TCGA-85-8355 TCGA-85-8479 TCGA-85-8481 TCGA-85-8582 TCGA-85-8666 TCGA-85-A4QR 
        0.66         0.72         0.66        13.91        15.58         0.82 
TCGA-85-A50M TCGA-85-A53L TCGA-90-6837 TCGA-90-7964 TCGA-92-7340 TCGA-92-7341 
        0.62         0.43        24.89        14.07         2.70         3.48 
TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 TCGA-96-7544 TCGA-96-8169 
        4.01         5.26         2.27         2.86        39.88         6.18 
TCGA-96-8170 TCGA-96-A4JK TCGA-98-8020 TCGA-J1-A4AH TCGA-L3-A4E7 TCGA-L3-A524 
        6.90         8.98         2.73         7.30         1.15        14.76 
TCGA-MF-A522 TCGA-NC-A5HG TCGA-NC-A5HI 
        3.02        50.86        37.32 

  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
              0.10               0.03 
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
            141.34             173.79 
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
             11.62              15.55 
[1] "0.1 - 141.3 (11.6)" "0.0 - 173.8 (15.6)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-22-A5C4         TCGA-33-4532         TCGA-33-4533 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-33-4538         TCGA-33-4547         TCGA-33-4566 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-33-4582         TCGA-33-4583         TCGA-33-4586 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-33-4587         TCGA-33-4589         TCGA-33-6737 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-33-6738         TCGA-34-2596         TCGA-34-2600 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-34-2604         TCGA-34-2605         TCGA-34-2608 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-34-2609         TCGA-34-5231         TCGA-34-5232 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-34-5234         TCGA-34-5236         TCGA-34-5239 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-34-5240         TCGA-34-5241         TCGA-34-5927 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-34-5928         TCGA-34-5929         TCGA-34-7107 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-3792 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4132 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-37-4133         TCGA-37-4135         TCGA-37-4141 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-37-5819         TCGA-39-5011         TCGA-39-5016 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-39-5019         TCGA-39-5021         TCGA-39-5022 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-39-5024         TCGA-39-5027         TCGA-39-5028 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-39-5029         TCGA-39-5030         TCGA-39-5031 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-39-5034         TCGA-39-5035         TCGA-39-5036 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-39-5037         TCGA-39-5039         TCGA-39-5040 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
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"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-68-7755         TCGA-68-7756         TCGA-68-7757 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-68-8250         TCGA-68-8251         TCGA-77-6842 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-77-6843         TCGA-77-6844         TCGA-77-6845 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-77-7138         TCGA-77-7139         TCGA-77-7140 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-77-7141         TCGA-77-7142         TCGA-77-7335 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-77-7337         TCGA-77-7338         TCGA-77-7463 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-77-7465         TCGA-77-8007         TCGA-77-8008 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-77-8009         TCGA-77-8128         TCGA-77-8130 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-77-8131         TCGA-77-8133         TCGA-77-8136 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-77-8138         TCGA-77-8139         TCGA-77-8140 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-77-8143         TCGA-77-8144         TCGA-77-8145 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-77-8148         TCGA-77-8150         TCGA-77-8153 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-77-8154         TCGA-77-8156         TCGA-77-A5FZ 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-77-A5G3         TCGA-77-A5GB         TCGA-77-A5GH 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-96-8169         TCGA-96-8170         TCGA-96-A4JK 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-96-A4JL         TCGA-98-7454         TCGA-98-8020 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-LA-A446         TCGA-MF-A522         TCGA-NC-A5HE 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D66V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  14Q LOSS MUTATED         0       30       45        0        17        24
  14Q LOSS WILD-TYPE       1       38       88        1        33        47
                    vv
clus                 STAGE IIIA STAGE IIIB STAGE IV
  14Q LOSS MUTATED           15          6        0
  14Q LOSS WILD-TYPE         39         14        5
D66V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  14Q LOSS MUTATED    39  83  10   5
  14Q LOSS WILD-TYPE  54 167  34  14
D66V4, multiclass
    clus
vv   14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  T1               39                 54
  T2               83                167
  T3               10                 34
  T4                5                 14
                    vv
clus                  N0  N1  N2  N3
  14Q LOSS MUTATED    85  43   7   0
  14Q LOSS WILD-TYPE 168  66  27   5
D66V5, multiclass
    clus
vv   14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  N0               85                168
  N1               43                 66
  N2                7                 27
  N3                0                  5
                    vv
clus                  M0  M1  MX
  14Q LOSS MUTATED   119   0  17
  14Q LOSS WILD-TYPE 229   5  30
D66V6, multiclass
    clus
vv   14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  M0              119                229
  M1                0                  5
  MX               17                 30
D66V7, binary
                    cls
clus                   0   1
  14Q LOSS MUTATED    39  98
  14Q LOSS WILD-TYPE  62 207
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  14Q LOSS MUTATED     39   98
  14Q LOSS WILD-TYPE   62  207
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  FEMALE               39                 62
  MALE                 98                207
D66V8, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  14Q LOSS MUTATED                                       5
  14Q LOSS WILD-TYPE                                     7
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  14Q LOSS MUTATED                                        0
  14Q LOSS WILD-TYPE                                      6
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  14Q LOSS MUTATED                                         1
  14Q LOSS WILD-TYPE                                       0
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  14Q LOSS MUTATED                                                           131
  14Q LOSS WILD-TYPE                                                         256
D66V9, multiclass
                                                             clus
vv                                                            14Q LOSS MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      5
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                     0
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              131
                                                             clus
vv                                                            14Q LOSS WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                        7
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                       6
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                      0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                256
D66V10, binary
                    cls
clus                   0   1
  14Q LOSS MUTATED     4 133
  14Q LOSS WILD-TYPE   8 261
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  14Q LOSS MUTATED      4  133
  14Q LOSS WILD-TYPE    8  261
     clus
vv    14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  NO                 4                  8
  YES              133                261
D66V11, continuous
D66V12, continuous
                    vv
clus                  R0  R1  R2  RX
  14Q LOSS MUTATED   113   3   1   3
  14Q LOSS WILD-TYPE 217   5   3  15
D66V13, multiclass
    clus
vv   14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  R0              113                217
  R1                3                  5
  R2                1                  3
  RX                3                 15

Clustering(67) Variable = 15Q LOSS MUTATION ANALYSIS
D67V1, survival
                    sevent
clus2                  0   1
  15Q LOSS MUTATED    60  40
  15Q LOSS WILD-TYPE 179  98
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
               100                277 
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
                40                 98 
$`15Q LOSS MUTATED`
TCGA-18-3406 TCGA-18-3412 TCGA-18-3416 TCGA-18-5592 TCGA-21-1070 TCGA-21-1071 
       12.16        11.34        28.34         3.02       119.54        46.88 
TCGA-21-1072 TCGA-21-1080 TCGA-21-5787 TCGA-22-0944 TCGA-22-1000 TCGA-22-1012 
       99.16       122.43        10.82         7.33        14.93        14.10 
TCGA-22-1016 TCGA-22-1017 TCGA-22-4594 TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 
       27.02        48.82        48.33        24.13         0.56        38.17 
TCGA-22-5471 TCGA-22-5480 TCGA-33-4533 TCGA-33-4582 TCGA-33-4587 TCGA-33-4589 
       31.73        71.34       114.05       103.53        54.44        10.98 
TCGA-34-2600 TCGA-34-5929 TCGA-37-3783 TCGA-37-4130 TCGA-37-4133 TCGA-37-4141 
       61.61         4.96         3.95         8.09         7.82         0.39 
TCGA-37-5819 TCGA-39-5011 TCGA-39-5016 TCGA-39-5021 TCGA-39-5028 TCGA-39-5029 
        3.39        47.80        74.07        68.58         1.71        24.33 
TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 TCGA-39-5040 TCGA-43-2578 TCGA-43-2581 
        1.94        27.35        36.39        17.06        22.49        38.66 
TCGA-43-5668 TCGA-43-5670 TCGA-43-A56V TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 
       11.47        18.05         5.06         9.96        10.65        13.87 
TCGA-52-7810 TCGA-56-7223 TCGA-56-7580 TCGA-56-7822 TCGA-56-8503 TCGA-56-A49D 
       30.31         0.99         1.32         0.03         1.35         0.99 
TCGA-58-8386 TCGA-60-2698 TCGA-60-2703 TCGA-60-2708 TCGA-60-2712 TCGA-60-2714 
        0.03        10.22        96.82        80.42         9.01        50.33 
TCGA-60-2720 TCGA-60-2723 TCGA-60-2726 TCGA-66-2737 TCGA-66-2742 TCGA-66-2756 
        3.16        35.90        11.77         2.01        21.07         0.99 
TCGA-66-2791 TCGA-66-2793 TCGA-66-2794 TCGA-66-2800 TCGA-68-8250 TCGA-77-6842 
        5.03        10.06        54.08        49.05         8.02        29.56 
TCGA-77-7139 TCGA-77-7337 TCGA-77-8007 TCGA-77-8009 TCGA-77-8128 TCGA-77-8130 
       89.95       106.95         6.51        53.95        37.81        82.92 
TCGA-77-8145 TCGA-77-8153 TCGA-77-8156 TCGA-77-A5GH TCGA-85-6560 TCGA-85-7696 
        6.97        55.33         0.33        23.44         0.36         0.59 
TCGA-85-7843 TCGA-85-8072 TCGA-85-8288 TCGA-85-8479 TCGA-85-8666 TCGA-85-A50M 
        1.15         1.18         1.78         0.72        15.58         0.62 
TCGA-85-A53L TCGA-90-7767 TCGA-90-A4ED TCGA-90-A4EE TCGA-92-8064 TCGA-92-8065 
        0.43         2.93         8.02        10.88         5.26         2.27 
TCGA-96-A4JK TCGA-MF-A522 TCGA-NC-A5HG TCGA-NC-A5HI 
        8.98         3.02        50.86        37.32 

$`15Q LOSS WILD-TYPE`
TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 TCGA-18-3414 
        4.47        81.07        79.46         4.80        46.52        13.02 
TCGA-18-3415 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 
       59.51        24.92         1.61        43.76         6.15         2.79 
TCGA-18-4721 TCGA-18-5595 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 
       90.51        27.16        70.13        60.89        34.78        15.55 
TCGA-21-1079 TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 
       31.69         9.30       119.80         8.78        31.63        88.08 
TCGA-21-5784 TCGA-21-5786 TCGA-21-A5DI TCGA-22-0940 TCGA-22-1002 TCGA-22-1005 
       41.69        33.93        32.19        19.99         4.31        64.21 
TCGA-22-1011 TCGA-22-4591 TCGA-22-4593 TCGA-22-4601 TCGA-22-4604 TCGA-22-4605 
        1.74        20.45        35.08        34.75        13.12        32.02 
TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 
       19.30         9.53        11.77        64.90        63.52        14.60 
TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 TCGA-22-5481 TCGA-22-5482 TCGA-22-5483 
       44.22         0.79        54.28        79.20        11.74        18.84 
TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-22-A5C4 TCGA-33-4532 
       30.08        62.86        56.32        16.60         0.95         7.63 
TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 
       97.94        43.10       173.79       141.34        14.07        19.76 
TCGA-33-6738 TCGA-34-2596 TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 
       26.99         2.63        31.50        28.96        32.84        31.23 
TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 
       50.24        67.79        56.38         9.04        23.24        12.00 
TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-7107 TCGA-37-3789 TCGA-37-3792 
       14.07        30.94        18.12         1.08         0.43         0.39 
TCGA-37-4129 TCGA-37-4132 TCGA-37-4135 TCGA-39-5019 TCGA-39-5022 TCGA-39-5024 
        6.54         7.46         6.81        44.71        55.17        70.03 
TCGA-39-5027 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2576 
       60.76        15.58        35.64        35.70        17.88        40.21 
TCGA-43-3394 TCGA-43-3920 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 
       27.02        33.07        12.36        24.89        10.19         5.42 
TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 
        3.78         6.97         1.58        66.51         6.64         6.35 
TCGA-43-8118 TCGA-43-A474 TCGA-43-A475 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 
        2.93        11.61         9.73         0.39         0.39        29.95 
TCGA-52-7622 TCGA-52-7809 TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 
       17.79         5.42         8.75        27.45        28.93         0.10 
TCGA-56-5898 TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 TCGA-56-7579 
       18.25         2.04         1.02         0.99         0.43         1.45 
TCGA-56-7582 TCGA-56-7730 TCGA-56-8504 TCGA-56-8622 TCGA-56-8624 TCGA-56-8625 
        0.85         0.20         5.82         1.78         1.18         2.07 
TCGA-56-8626 TCGA-56-8628 TCGA-56-8629 TCGA-56-A4BX TCGA-56-A4BY TCGA-56-A4ZJ 
        0.56         0.53         1.12         1.51         0.99         1.02 
TCGA-56-A4ZK TCGA-56-A5DS TCGA-58-8387 TCGA-58-8388 TCGA-58-8390 TCGA-58-8391 
        0.13         0.26        13.25        12.43        29.95        71.24 
TCGA-58-8392 TCGA-58-8393 TCGA-58-A46J TCGA-58-A46K TCGA-58-A46L TCGA-58-A46M 
       16.47        34.78        64.87        34.36        36.59        23.24 
TCGA-58-A46N TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 TCGA-60-2704 TCGA-60-2706 
       17.72        21.07         3.58        12.23        37.94        92.71 
TCGA-60-2707 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2713 TCGA-60-2715 
       21.70        49.48        66.51        41.39        56.91        35.34 
TCGA-60-2716 TCGA-60-2719 TCGA-60-2721 TCGA-60-2722 TCGA-60-2724 TCGA-60-2725 
       48.49        42.61        32.28        29.85        23.57        26.79 
TCGA-66-2727 TCGA-66-2734 TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 
       16.96        43.10         0.99         1.02         2.01         0.92 
TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 
        0.99        20.98        25.02         0.99         2.01         1.02 
TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 
        2.01         2.01         7.07        23.01        19.00         3.02 
TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 
        2.01        19.00        12.03         3.98        12.00        24.95 
TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 
        1.94        25.97        40.01        22.98         4.04        22.98 
TCGA-66-2792 TCGA-66-2795 TCGA-68-7755 TCGA-68-7756 TCGA-68-7757 TCGA-68-8251 
       30.02         4.01         2.73         6.64         6.94         3.12 
TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 TCGA-77-7140 TCGA-77-7141 
       73.08        75.09        23.28        11.18        20.78         0.49 
TCGA-77-7142 TCGA-77-7335 TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 TCGA-77-8008 
       42.25        70.09         0.16        46.78        15.75        86.76 
TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 
       12.59        53.92        39.09        17.69       104.09        11.54 
TCGA-77-8143 TCGA-77-8144 TCGA-77-8148 TCGA-77-8150 TCGA-77-8154 TCGA-77-A5FZ 
       26.40        27.39         9.63        54.41        35.90       126.18 
TCGA-77-A5G3 TCGA-77-A5GB TCGA-85-6561 TCGA-85-6798 TCGA-85-7697 TCGA-85-7698 
      117.57        30.81         0.79         1.12         0.33         1.61 
TCGA-85-7699 TCGA-85-7844 TCGA-85-7950 TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 
        0.03         1.25         1.97         0.85         1.97         0.53 
TCGA-85-8070 TCGA-85-8071 TCGA-85-8276 TCGA-85-8277 TCGA-85-8287 TCGA-85-8350 
       16.77        14.07         0.43         0.36         1.45         1.97 
TCGA-85-8351 TCGA-85-8352 TCGA-85-8353 TCGA-85-8354 TCGA-85-8355 TCGA-85-8481 
        1.81         2.20         1.78         2.01         0.66         0.66 
TCGA-85-8580 TCGA-85-8582 TCGA-85-8664 TCGA-85-A4CL TCGA-85-A4QR TCGA-85-A513 
       14.60        13.91         0.10         0.46         0.82         0.79 
TCGA-90-6837 TCGA-90-7766 TCGA-90-7769 TCGA-90-7964 TCGA-92-7340 TCGA-92-7341 
       24.89         9.50        11.77        14.07         2.70         3.48 
TCGA-92-8063 TCGA-94-7033 TCGA-94-7557 TCGA-94-7943 TCGA-96-7544 TCGA-96-7545 
        4.01         2.86         0.16        11.70        39.88        44.15 
TCGA-96-8169 TCGA-96-8170 TCGA-96-A4JL TCGA-98-7454 TCGA-98-8020 TCGA-98-8021 
        6.18         6.90         6.02         8.42         2.73        13.58 
TCGA-98-8022 TCGA-98-8023 TCGA-J1-A4AH TCGA-L3-A4E7 TCGA-L3-A524 TCGA-LA-A446 
        7.33        10.13         7.30         1.15        14.76         1.18 
TCGA-NC-A5HE 
       56.61 

  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
              0.03               0.03 
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
            122.43             173.79 
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
             11.62              14.07 
[1] "0.0 - 122.4 (11.6)" "0.0 - 173.8 (14.1)"
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  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
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"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
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  "15Q LOSS MUTATED"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
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"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
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"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-22-A5C4         TCGA-33-4532         TCGA-33-4533 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-33-4538         TCGA-33-4547         TCGA-33-4566 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-33-4582         TCGA-33-4583         TCGA-33-4586 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-33-4587         TCGA-33-4589         TCGA-33-6737 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-33-6738         TCGA-34-2596         TCGA-34-2600 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-34-2604         TCGA-34-2605         TCGA-34-2608 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-34-2609         TCGA-34-5231         TCGA-34-5232 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-34-5234         TCGA-34-5236         TCGA-34-5239 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-34-5240         TCGA-34-5241         TCGA-34-5927 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-34-5928         TCGA-34-5929         TCGA-34-7107 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-3792 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4132 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-37-4133         TCGA-37-4135         TCGA-37-4141 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-37-5819         TCGA-39-5011         TCGA-39-5016 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-39-5019         TCGA-39-5021         TCGA-39-5022 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-39-5024         TCGA-39-5027         TCGA-39-5028 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-39-5029         TCGA-39-5030         TCGA-39-5031 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-39-5034         TCGA-39-5035         TCGA-39-5036 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-39-5037         TCGA-39-5039         TCGA-39-5040 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-43-8118 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-43-A474         TCGA-43-A475         TCGA-43-A56V 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-46-3768         TCGA-46-6025         TCGA-46-6026 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-51-4079         TCGA-51-4080         TCGA-51-4081 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-52-7622         TCGA-52-7809         TCGA-52-7810 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-52-7811         TCGA-52-7812         TCGA-56-1622 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-56-5897         TCGA-56-5898         TCGA-56-6545 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-56-6546         TCGA-56-7221         TCGA-56-7222 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-56-7223         TCGA-56-7579         TCGA-56-7580 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-56-7582         TCGA-56-7730         TCGA-56-7822 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-56-8503         TCGA-56-8504         TCGA-56-8622 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-56-8624         TCGA-56-8625         TCGA-56-8626 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-56-8628         TCGA-56-8629         TCGA-56-A49D 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-56-A4BX         TCGA-56-A4BY         TCGA-56-A4ZJ 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-56-A4ZK         TCGA-56-A5DS         TCGA-58-8386 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-58-8387         TCGA-58-8388         TCGA-58-8390 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-58-8391         TCGA-58-8392         TCGA-58-8393 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-58-A46J         TCGA-58-A46K         TCGA-58-A46L 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-58-A46M         TCGA-58-A46N         TCGA-60-2695 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-60-2696         TCGA-60-2697         TCGA-60-2698 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-60-2703         TCGA-60-2704         TCGA-60-2706 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2756 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-66-2770         TCGA-66-2771         TCGA-66-2773 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-66-2785         TCGA-66-2786         TCGA-66-2787 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-68-7755         TCGA-68-7756         TCGA-68-7757 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-68-8250         TCGA-68-8251         TCGA-77-6842 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-77-6843         TCGA-77-6844         TCGA-77-6845 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-77-7138         TCGA-77-7139         TCGA-77-7140 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-77-7141         TCGA-77-7142         TCGA-77-7335 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-77-7337         TCGA-77-7338         TCGA-77-7463 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-77-7465         TCGA-77-8007         TCGA-77-8008 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-77-8009         TCGA-77-8128         TCGA-77-8130 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-77-8131         TCGA-77-8133         TCGA-77-8136 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-77-8138         TCGA-77-8139         TCGA-77-8140 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-77-8143         TCGA-77-8144         TCGA-77-8145 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-77-8148         TCGA-77-8150         TCGA-77-8153 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-77-8154         TCGA-77-8156         TCGA-77-A5FZ 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-77-A5G3         TCGA-77-A5GB         TCGA-77-A5GH 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-96-8169         TCGA-96-8170         TCGA-96-A4JK 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-96-A4JL         TCGA-98-7454         TCGA-98-8020 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-LA-A446         TCGA-MF-A522         TCGA-NC-A5HE 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
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        TCGA-39-5034         TCGA-39-5035         TCGA-39-5036 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-39-5037         TCGA-39-5039         TCGA-39-5040 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-43-8118 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-43-A474         TCGA-43-A475         TCGA-43-A56V 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-46-3768         TCGA-46-6025         TCGA-46-6026 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-51-4079         TCGA-51-4080         TCGA-51-4081 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-52-7622         TCGA-52-7809         TCGA-52-7810 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-52-7811         TCGA-52-7812         TCGA-56-1622 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-56-5897         TCGA-56-5898         TCGA-56-6545 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-56-6546         TCGA-56-7221         TCGA-56-7222 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-56-7223         TCGA-56-7579         TCGA-56-7580 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-56-7582         TCGA-56-7730         TCGA-56-7822 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-56-8503         TCGA-56-8504         TCGA-56-8622 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-56-8624         TCGA-56-8625         TCGA-56-8626 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-56-8628         TCGA-56-8629         TCGA-56-A49D 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-56-A4BX         TCGA-56-A4BY         TCGA-56-A4ZJ 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-56-A4ZK         TCGA-56-A5DS         TCGA-58-8386 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-58-8387         TCGA-58-8388         TCGA-58-8390 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-58-8391         TCGA-58-8392         TCGA-58-8393 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-58-A46J         TCGA-58-A46K         TCGA-58-A46L 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-58-A46M         TCGA-58-A46N         TCGA-60-2695 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-60-2696         TCGA-60-2697         TCGA-60-2698 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-60-2703         TCGA-60-2704         TCGA-60-2706 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2756 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-66-2770         TCGA-66-2771         TCGA-66-2773 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-66-2785         TCGA-66-2786         TCGA-66-2787 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-68-7755         TCGA-68-7756         TCGA-68-7757 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-68-8250         TCGA-68-8251         TCGA-77-6842 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-77-6843         TCGA-77-6844         TCGA-77-6845 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-77-7138         TCGA-77-7139         TCGA-77-7140 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-77-7141         TCGA-77-7142         TCGA-77-7335 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-77-7337         TCGA-77-7338         TCGA-77-7463 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-77-7465         TCGA-77-8007         TCGA-77-8008 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-77-8009         TCGA-77-8128         TCGA-77-8130 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-77-8131         TCGA-77-8133         TCGA-77-8136 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-77-8138         TCGA-77-8139         TCGA-77-8140 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-77-8143         TCGA-77-8144         TCGA-77-8145 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-77-8148         TCGA-77-8150         TCGA-77-8153 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-77-8154         TCGA-77-8156         TCGA-77-A5FZ 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-77-A5G3         TCGA-77-A5GB         TCGA-77-A5GH 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-96-8169         TCGA-96-8170         TCGA-96-A4JK 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-96-A4JL         TCGA-98-7454         TCGA-98-8020 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-LA-A446         TCGA-MF-A522         TCGA-NC-A5HE 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
[1] "hr=" "1"  
D67V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  15Q LOSS MUTATED         0       13       29        0        11        26
  15Q LOSS WILD-TYPE       1       55      104        1        39        45
                    vv
clus                 STAGE IIIA STAGE IIIB STAGE IV
  15Q LOSS MUTATED           19          7        2
  15Q LOSS WILD-TYPE         35         13        3
D67V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  15Q LOSS MUTATED    19  66  15   7
  15Q LOSS WILD-TYPE  74 184  29  12
D67V4, multiclass
    clus
vv   15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  T1               19                 74
  T2               66                184
  T3               15                 29
  T4                7                 12
                    vv
clus                  N0  N1  N2  N3
  15Q LOSS MUTATED    55  37  13   1
  15Q LOSS WILD-TYPE 198  72  21   4
D67V5, multiclass
    clus
vv   15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  N0               55                198
  N1               37                 72
  N2               13                 21
  N3                1                  4
                    vv
clus                  M0  M1  MX
  15Q LOSS MUTATED    94   2  10
  15Q LOSS WILD-TYPE 254   3  37
D67V6, multiclass
    clus
vv   15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  M0               94                254
  M1                2                  3
  MX               10                 37
D67V7, binary
                    cls
clus                   0   1
  15Q LOSS MUTATED    30  77
  15Q LOSS WILD-TYPE  71 228
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  15Q LOSS MUTATED     30   77
  15Q LOSS WILD-TYPE   71  228
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  FEMALE               30                 71
  MALE                 77                228
D67V8, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  15Q LOSS MUTATED                                       2
  15Q LOSS WILD-TYPE                                    10
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  15Q LOSS MUTATED                                        1
  15Q LOSS WILD-TYPE                                      5
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  15Q LOSS MUTATED                                         1
  15Q LOSS WILD-TYPE                                       0
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  15Q LOSS MUTATED                                                           103
  15Q LOSS WILD-TYPE                                                         284
D67V9, multiclass
                                                             clus
vv                                                            15Q LOSS MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      2
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                     1
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              103
                                                             clus
vv                                                            15Q LOSS WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       10
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                       5
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                      0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                284
D67V10, binary
                    cls
clus                   0   1
  15Q LOSS MUTATED     6 101
  15Q LOSS WILD-TYPE   6 293
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  15Q LOSS MUTATED      6  101
  15Q LOSS WILD-TYPE    6  293
     clus
vv    15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  NO                 6                  6
  YES              101                293
D67V11, continuous
D67V12, continuous
                    vv
clus                  R0  R1  R2  RX
  15Q LOSS MUTATED    89   2   2   4
  15Q LOSS WILD-TYPE 241   6   2  14
D67V13, multiclass
    clus
vv   15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  R0               89                241
  R1                2                  6
  R2                2                  2
  RX                4                 14

Clustering(68) Variable = 16P LOSS MUTATION ANALYSIS
D68V1, survival
                    sevent
clus2                  0   1
  16P LOSS MUTATED    85  34
  16P LOSS WILD-TYPE 154 104
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
               119                258 
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
                34                104 
$`16P LOSS MUTATED`
TCGA-18-3410 TCGA-18-3415 TCGA-18-4083 TCGA-18-5592 TCGA-21-1070 TCGA-21-1076 
        4.80        59.51         6.15         3.02       119.54        60.89 
TCGA-21-1080 TCGA-21-5786 TCGA-22-0940 TCGA-22-1002 TCGA-22-1012 TCGA-22-4594 
      122.43        33.93        19.99         4.31        14.10        48.33 
TCGA-22-4595 TCGA-22-4599 TCGA-22-4604 TCGA-22-4613 TCGA-22-5478 TCGA-22-5480 
       24.13        38.17        13.12        11.77         0.79        71.34 
TCGA-22-5482 TCGA-33-4533 TCGA-33-6737 TCGA-34-2596 TCGA-34-2609 TCGA-34-5236 
       11.74       114.05        19.76         2.63        31.23         9.04 
TCGA-34-5239 TCGA-34-5927 TCGA-34-5928 TCGA-39-5011 TCGA-39-5016 TCGA-39-5021 
       23.24        30.94        18.12        47.80        74.07        68.58 
TCGA-39-5027 TCGA-39-5028 TCGA-39-5040 TCGA-43-3394 TCGA-43-5670 TCGA-43-6143 
       60.76         1.71        17.06        27.02        18.05        12.36 
TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 TCGA-43-8116 TCGA-46-6025 TCGA-52-7622 
        6.97         1.58        66.51         6.35        10.65        17.79 
TCGA-52-7809 TCGA-52-7810 TCGA-56-7580 TCGA-56-7822 TCGA-56-8503 TCGA-56-8629 
        5.42        30.31         1.32         0.03         1.35         1.12 
TCGA-56-A49D TCGA-56-A4BX TCGA-56-A4BY TCGA-58-8386 TCGA-58-8391 TCGA-58-8392 
        0.99         1.51         0.99         0.03        71.24        16.47 
TCGA-58-8393 TCGA-58-A46J TCGA-58-A46K TCGA-58-A46L TCGA-60-2695 TCGA-60-2708 
       34.78        64.87        34.36        36.59        21.07        80.42 
TCGA-60-2714 TCGA-60-2719 TCGA-60-2720 TCGA-60-2723 TCGA-60-2724 TCGA-66-2727 
       50.33        42.61         3.16        35.90        23.57        16.96 
TCGA-66-2734 TCGA-66-2753 TCGA-66-2757 TCGA-66-2758 TCGA-66-2763 TCGA-66-2769 
       43.10         1.02         0.99        20.98         0.99         7.07 
TCGA-66-2781 TCGA-66-2782 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2790 
        3.98        12.00         1.94        25.97        40.01        22.98 
TCGA-66-2792 TCGA-66-2800 TCGA-68-7756 TCGA-68-8251 TCGA-77-6842 TCGA-77-7139 
       30.02        49.05         6.64         3.12        29.56        89.95 
TCGA-77-7142 TCGA-77-7463 TCGA-77-8130 TCGA-77-8136 TCGA-77-8140 TCGA-77-8143 
       42.25        46.78        82.92        39.09        11.54        26.40 
TCGA-77-8154 TCGA-77-8156 TCGA-77-A5GH TCGA-85-6798 TCGA-85-7698 TCGA-85-7699 
       35.90         0.33        23.44         1.12         1.61         0.03 
TCGA-85-7950 TCGA-85-8052 TCGA-85-8070 TCGA-85-8277 TCGA-85-8351 TCGA-85-8352 
        1.97         0.53        16.77         0.36         1.81         2.20 
TCGA-85-8353 TCGA-85-8355 TCGA-85-8580 TCGA-85-8664 TCGA-85-8666 TCGA-85-A4QR 
        1.78         0.66        14.60         0.10        15.58         0.82 
TCGA-85-A53L TCGA-90-7767 TCGA-90-A4EE TCGA-92-8064 TCGA-94-7557 TCGA-96-7544 
        0.43         2.93        10.88         5.26         0.16        39.88 
TCGA-96-8169 TCGA-96-A4JK TCGA-L3-A4E7 TCGA-L3-A524 TCGA-NC-A5HG 
        6.18         8.98         1.15        14.76        50.86 

$`16P LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07        79.46        46.52        11.34 
TCGA-18-3414 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4086 
       13.02        28.34        24.92         1.61        43.76         2.79 
TCGA-18-4721 TCGA-18-5595 TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 TCGA-21-1077 
       90.51        27.16        46.88        99.16        70.13        34.78 
TCGA-21-1078 TCGA-21-1079 TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 
       15.55        31.69         9.30       119.80         8.78        31.63 
TCGA-21-5783 TCGA-21-5784 TCGA-21-5787 TCGA-21-A5DI TCGA-22-0944 TCGA-22-1000 
       88.08        41.69        10.82        32.19         7.33        14.93 
TCGA-22-1005 TCGA-22-1011 TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 TCGA-22-4593 
       64.21         1.74        27.02        48.82        20.45        35.08 
TCGA-22-4596 TCGA-22-4601 TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 TCGA-22-5471 
        0.56        34.75        32.02        19.30         9.53        31.73 
TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5479 TCGA-22-5481 
       64.90        63.52        14.60        44.22        54.28        79.20 
TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-22-A5C4 
       18.84        30.08        62.86        56.32        16.60         0.95 
TCGA-33-4532 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 
        7.63        97.94        43.10       173.79       103.53       141.34 
TCGA-33-4586 TCGA-33-4587 TCGA-33-4589 TCGA-33-6738 TCGA-34-2600 TCGA-34-2604 
       14.07        54.44        10.98        26.99        61.61        31.50 
TCGA-34-2605 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5240 
       28.96        32.84        50.24        67.79        56.38        12.00 
TCGA-34-5241 TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 
       14.07         4.96         1.08         3.95         0.43         0.39 
TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 
        6.54         8.09         7.46         7.82         6.81         0.39 
TCGA-37-5819 TCGA-39-5019 TCGA-39-5022 TCGA-39-5024 TCGA-39-5029 TCGA-39-5030 
        3.39        44.71        55.17        70.03        24.33         1.94 
TCGA-39-5031 TCGA-39-5034 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 
       27.35        36.39        15.58        35.64        35.70        17.88 
TCGA-43-2576 TCGA-43-2578 TCGA-43-2581 TCGA-43-3920 TCGA-43-5668 TCGA-43-6647 
       40.21        22.49        38.66        33.07        11.47        24.89 
TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 TCGA-43-8115 TCGA-43-8118 TCGA-43-A474 
       10.19         5.42         3.78         6.64         2.93        11.61 
TCGA-43-A475 TCGA-43-A56V TCGA-46-3768 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 
        9.73         5.06         9.96        13.87         0.39         0.39 
TCGA-51-4081 TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 TCGA-56-5898 
       29.95         8.75        27.45        28.93         0.10        18.25 
TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 
        2.04         1.02         0.99         0.43         0.99         1.45 
TCGA-56-7582 TCGA-56-7730 TCGA-56-8504 TCGA-56-8622 TCGA-56-8624 TCGA-56-8625 
        0.85         0.20         5.82         1.78         1.18         2.07 
TCGA-56-8626 TCGA-56-8628 TCGA-56-A4ZJ TCGA-56-A4ZK TCGA-56-A5DS TCGA-58-8387 
        0.56         0.53         1.02         0.13         0.26        13.25 
TCGA-58-8388 TCGA-58-8390 TCGA-58-A46M TCGA-58-A46N TCGA-60-2696 TCGA-60-2697 
       12.43        29.95        23.24        17.72         3.58        12.23 
TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 TCGA-60-2709 
       10.22        96.82        37.94        92.71        21.70        49.48 
TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2716 
       66.51        41.39         9.01        56.91        35.34        48.49 
TCGA-60-2721 TCGA-60-2722 TCGA-60-2725 TCGA-60-2726 TCGA-66-2737 TCGA-66-2742 
       32.28        29.85        26.79        11.77         2.01        21.07 
TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2759 TCGA-66-2765 
        0.99         2.01         0.92         0.99        25.02         2.01 
TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 
        1.02         2.01         2.01        23.01        19.00         3.02 
TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2783 TCGA-66-2788 TCGA-66-2789 
        2.01        19.00        12.03        24.95        22.98         4.04 
TCGA-66-2791 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-68-7755 TCGA-68-7757 
        5.03        10.06        54.08         4.01         2.73         6.94 
TCGA-68-8250 TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 TCGA-77-7140 
        8.02        73.08        75.09        23.28        11.18        20.78 
TCGA-77-7141 TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 TCGA-77-7465 TCGA-77-8007 
        0.49        70.09       106.95         0.16        15.75         6.51 
TCGA-77-8008 TCGA-77-8009 TCGA-77-8128 TCGA-77-8131 TCGA-77-8133 TCGA-77-8138 
       86.76        53.95        37.81        12.59        53.92        17.69 
TCGA-77-8139 TCGA-77-8144 TCGA-77-8145 TCGA-77-8148 TCGA-77-8150 TCGA-77-8153 
      104.09        27.39         6.97         9.63        54.41        55.33 
TCGA-77-A5FZ TCGA-77-A5G3 TCGA-77-A5GB TCGA-85-6560 TCGA-85-6561 TCGA-85-7696 
      126.18       117.57        30.81         0.36         0.79         0.59 
TCGA-85-7697 TCGA-85-7843 TCGA-85-7844 TCGA-85-8048 TCGA-85-8049 TCGA-85-8071 
        0.33         1.15         1.25         0.85         1.97        14.07 
TCGA-85-8072 TCGA-85-8276 TCGA-85-8287 TCGA-85-8288 TCGA-85-8350 TCGA-85-8354 
        1.18         0.43         1.45         1.78         1.97         2.01 
TCGA-85-8479 TCGA-85-8481 TCGA-85-8582 TCGA-85-A4CL TCGA-85-A50M TCGA-85-A513 
        0.72         0.66        13.91         0.46         0.62         0.79 
TCGA-90-6837 TCGA-90-7766 TCGA-90-7769 TCGA-90-7964 TCGA-90-A4ED TCGA-92-7340 
       24.89         9.50        11.77        14.07         8.02         2.70 
TCGA-92-7341 TCGA-92-8063 TCGA-92-8065 TCGA-94-7033 TCGA-94-7943 TCGA-96-7545 
        3.48         4.01         2.27         2.86        11.70        44.15 
TCGA-96-8170 TCGA-96-A4JL TCGA-98-7454 TCGA-98-8020 TCGA-98-8021 TCGA-98-8022 
        6.90         6.02         8.42         2.73        13.58         7.33 
TCGA-98-8023 TCGA-J1-A4AH TCGA-LA-A446 TCGA-MF-A522 TCGA-NC-A5HE TCGA-NC-A5HI 
       10.13         7.30         1.18         3.02        56.61        37.32 

  16P LOSS MUTATED 16P LOSS WILD-TYPE 
              0.03               0.10 
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
            122.43             173.79 
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
            14.760             12.805 
[1] "0.0 - 122.4 (14.8)" "0.1 - 173.8 (12.8)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-22-A5C4         TCGA-33-4532         TCGA-33-4533 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-33-4538         TCGA-33-4547         TCGA-33-4566 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-33-4582         TCGA-33-4583         TCGA-33-4586 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-33-4587         TCGA-33-4589         TCGA-33-6737 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-33-6738         TCGA-34-2596         TCGA-34-2600 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-34-2604         TCGA-34-2605         TCGA-34-2608 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-34-2609         TCGA-34-5231         TCGA-34-5232 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-34-5234         TCGA-34-5236         TCGA-34-5239 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-34-5240         TCGA-34-5241         TCGA-34-5927 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-34-5928         TCGA-34-5929         TCGA-34-7107 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-3792 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4132 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-37-4133         TCGA-37-4135         TCGA-37-4141 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-37-5819         TCGA-39-5011         TCGA-39-5016 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-39-5019         TCGA-39-5021         TCGA-39-5022 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-39-5024         TCGA-39-5027         TCGA-39-5028 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-39-5029         TCGA-39-5030         TCGA-39-5031 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-39-5034         TCGA-39-5035         TCGA-39-5036 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-39-5037         TCGA-39-5039         TCGA-39-5040 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
  "16P LOSS MUTATED"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-43-8115         TCGA-43-8116         TCGA-43-8118 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-43-A474         TCGA-43-A475         TCGA-43-A56V 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-46-3768         TCGA-46-6025         TCGA-46-6026 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-51-4079         TCGA-51-4080         TCGA-51-4081 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-52-7622         TCGA-52-7809         TCGA-52-7810 
  "16P LOSS MUTATED"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-52-7811         TCGA-52-7812         TCGA-56-1622 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-56-5897         TCGA-56-5898         TCGA-56-6545 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-56-6546         TCGA-56-7221         TCGA-56-7222 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-56-7223         TCGA-56-7579         TCGA-56-7580 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-56-7582         TCGA-56-7730         TCGA-56-7822 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-56-8503         TCGA-56-8504         TCGA-56-8622 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-56-8624         TCGA-56-8625         TCGA-56-8626 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-56-8628         TCGA-56-8629         TCGA-56-A49D 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-56-A4BX         TCGA-56-A4BY         TCGA-56-A4ZJ 
  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-56-A4ZK         TCGA-56-A5DS         TCGA-58-8386 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-58-8387         TCGA-58-8388         TCGA-58-8390 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-58-8391         TCGA-58-8392         TCGA-58-8393 
  "16P LOSS MUTATED"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-58-A46J         TCGA-58-A46K         TCGA-58-A46L 
  "16P LOSS MUTATED"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-58-A46M         TCGA-58-A46N         TCGA-60-2695 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-60-2696         TCGA-60-2697         TCGA-60-2698 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-60-2703         TCGA-60-2704         TCGA-60-2706 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2756 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-66-2770         TCGA-66-2771         TCGA-66-2773 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-66-2785         TCGA-66-2786         TCGA-66-2787 
  "16P LOSS MUTATED"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-68-7755         TCGA-68-7756         TCGA-68-7757 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-68-8250         TCGA-68-8251         TCGA-77-6842 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-77-6843         TCGA-77-6844         TCGA-77-6845 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-77-7138         TCGA-77-7139         TCGA-77-7140 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-77-7141         TCGA-77-7142         TCGA-77-7335 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-77-7337         TCGA-77-7338         TCGA-77-7463 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-77-7465         TCGA-77-8007         TCGA-77-8008 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-77-8009         TCGA-77-8128         TCGA-77-8130 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-77-8131         TCGA-77-8133         TCGA-77-8136 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-77-8138         TCGA-77-8139         TCGA-77-8140 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-77-8143         TCGA-77-8144         TCGA-77-8145 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-77-8148         TCGA-77-8150         TCGA-77-8153 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-77-8154         TCGA-77-8156         TCGA-77-A5FZ 
  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
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        TCGA-96-A4JL         TCGA-98-7454         TCGA-98-8020 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-LA-A446         TCGA-MF-A522         TCGA-NC-A5HE 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-22-A5C4         TCGA-33-4532         TCGA-33-4533 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-33-4538         TCGA-33-4547         TCGA-33-4566 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-33-4582         TCGA-33-4583         TCGA-33-4586 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-33-4587         TCGA-33-4589         TCGA-33-6737 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-33-6738         TCGA-34-2596         TCGA-34-2600 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-34-2604         TCGA-34-2605         TCGA-34-2608 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-34-2609         TCGA-34-5231         TCGA-34-5232 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-34-5234         TCGA-34-5236         TCGA-34-5239 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-34-5240         TCGA-34-5241         TCGA-34-5927 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-34-5928         TCGA-34-5929         TCGA-34-7107 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-3792 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4132 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-37-4133         TCGA-37-4135         TCGA-37-4141 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-37-5819         TCGA-39-5011         TCGA-39-5016 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-39-5019         TCGA-39-5021         TCGA-39-5022 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-39-5024         TCGA-39-5027         TCGA-39-5028 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-39-5029         TCGA-39-5030         TCGA-39-5031 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-39-5034         TCGA-39-5035         TCGA-39-5036 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-39-5037         TCGA-39-5039         TCGA-39-5040 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
  "16P LOSS MUTATED"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-43-8115         TCGA-43-8116         TCGA-43-8118 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-43-A474         TCGA-43-A475         TCGA-43-A56V 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-46-3768         TCGA-46-6025         TCGA-46-6026 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-51-4079         TCGA-51-4080         TCGA-51-4081 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-52-7622         TCGA-52-7809         TCGA-52-7810 
  "16P LOSS MUTATED"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-52-7811         TCGA-52-7812         TCGA-56-1622 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-56-5897         TCGA-56-5898         TCGA-56-6545 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-56-6546         TCGA-56-7221         TCGA-56-7222 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-56-7223         TCGA-56-7579         TCGA-56-7580 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-56-7582         TCGA-56-7730         TCGA-56-7822 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-56-8503         TCGA-56-8504         TCGA-56-8622 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-56-8624         TCGA-56-8625         TCGA-56-8626 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-56-8628         TCGA-56-8629         TCGA-56-A49D 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-56-A4BX         TCGA-56-A4BY         TCGA-56-A4ZJ 
  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-56-A4ZK         TCGA-56-A5DS         TCGA-58-8386 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-58-8387         TCGA-58-8388         TCGA-58-8390 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-58-8391         TCGA-58-8392         TCGA-58-8393 
  "16P LOSS MUTATED"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-58-A46J         TCGA-58-A46K         TCGA-58-A46L 
  "16P LOSS MUTATED"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-58-A46M         TCGA-58-A46N         TCGA-60-2695 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-60-2696         TCGA-60-2697         TCGA-60-2698 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-60-2703         TCGA-60-2704         TCGA-60-2706 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2756 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-66-2770         TCGA-66-2771         TCGA-66-2773 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-66-2785         TCGA-66-2786         TCGA-66-2787 
  "16P LOSS MUTATED"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-68-7755         TCGA-68-7756         TCGA-68-7757 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-68-8250         TCGA-68-8251         TCGA-77-6842 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-77-6843         TCGA-77-6844         TCGA-77-6845 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-77-7138         TCGA-77-7139         TCGA-77-7140 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-77-7141         TCGA-77-7142         TCGA-77-7335 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-77-7337         TCGA-77-7338         TCGA-77-7463 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-77-7465         TCGA-77-8007         TCGA-77-8008 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-77-8009         TCGA-77-8128         TCGA-77-8130 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-77-8131         TCGA-77-8133         TCGA-77-8136 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-77-8138         TCGA-77-8139         TCGA-77-8140 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-77-8143         TCGA-77-8144         TCGA-77-8145 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-77-8148         TCGA-77-8150         TCGA-77-8153 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-77-8154         TCGA-77-8156         TCGA-77-A5FZ 
  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-77-A5G3         TCGA-77-A5GB         TCGA-77-A5GH 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
  "16P LOSS MUTATED"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-96-8169         TCGA-96-8170         TCGA-96-A4JK 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-96-A4JL         TCGA-98-7454         TCGA-98-8020 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-LA-A446         TCGA-MF-A522         TCGA-NC-A5HE 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
[1] "hr=" "1.3"
D68V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  16P LOSS MUTATED         0       17       44        0        12        27
  16P LOSS WILD-TYPE       1       51       89        1        38        44
                    vv
clus                 STAGE IIIA STAGE IIIB STAGE IV
  16P LOSS MUTATED           20          4        1
  16P LOSS WILD-TYPE         34         16        4
D68V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  16P LOSS MUTATED    20  82  17   6
  16P LOSS WILD-TYPE  73 168  27  13
D68V4, multiclass
    clus
vv   16P LOSS MUTATED 16P LOSS WILD-TYPE
  T1               20                 73
  T2               82                168
  T3               17                 27
  T4                6                 13
                    vv
clus                  N0  N1  N2  N3
  16P LOSS MUTATED    80  34  10   0
  16P LOSS WILD-TYPE 173  75  24   5
D68V5, multiclass
    clus
vv   16P LOSS MUTATED 16P LOSS WILD-TYPE
  N0               80                173
  N1               34                 75
  N2               10                 24
  N3                0                  5
                    vv
clus                  M0  M1  MX
  16P LOSS MUTATED   112   1  11
  16P LOSS WILD-TYPE 236   4  36
D68V6, multiclass
    clus
vv   16P LOSS MUTATED 16P LOSS WILD-TYPE
  M0              112                236
  M1                1                  4
  MX               11                 36
D68V7, binary
                    cls
clus                   0   1
  16P LOSS MUTATED    37  88
  16P LOSS WILD-TYPE  64 217
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16P LOSS MUTATED     37   88
  16P LOSS WILD-TYPE   64  217
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  FEMALE               37                 64
  MALE                 88                217
D68V8, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  16P LOSS MUTATED                                       7
  16P LOSS WILD-TYPE                                     5
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  16P LOSS MUTATED                                        0
  16P LOSS WILD-TYPE                                      6
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  16P LOSS MUTATED                                         0
  16P LOSS WILD-TYPE                                       1
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  16P LOSS MUTATED                                                           118
  16P LOSS WILD-TYPE                                                         269
D68V9, multiclass
                                                             clus
vv                                                            16P LOSS MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      7
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                     0
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                    0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              118
                                                             clus
vv                                                            16P LOSS WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                        5
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                       6
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                      1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                269
D68V10, binary
                    cls
clus                   0   1
  16P LOSS MUTATED     4 121
  16P LOSS WILD-TYPE   8 273
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16P LOSS MUTATED      4  121
  16P LOSS WILD-TYPE    8  273
     clus
vv    16P LOSS MUTATED 16P LOSS WILD-TYPE
  NO                 4                  8
  YES              121                273
D68V11, continuous
D68V12, continuous
                    vv
clus                  R0  R1  R2  RX
  16P LOSS MUTATED   103   1   0   4
  16P LOSS WILD-TYPE 227   7   4  14
D68V13, multiclass
    clus
vv   16P LOSS MUTATED 16P LOSS WILD-TYPE
  R0              103                227
  R1                1                  7
  R2                0                  4
  RX                4                 14

Clustering(69) Variable = 16Q LOSS MUTATION ANALYSIS
D69V1, survival
                    sevent
clus2                  0   1
  16Q LOSS MUTATED    90  44
  16Q LOSS WILD-TYPE 149  94
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
               134                243 
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
                44                 94 
$`16Q LOSS MUTATED`
TCGA-18-3410 TCGA-18-3415 TCGA-18-3419 TCGA-18-4083 TCGA-18-5592 TCGA-21-1070 
        4.80        59.51         1.61         6.15         3.02       119.54 
TCGA-21-1076 TCGA-21-1080 TCGA-21-1083 TCGA-22-0940 TCGA-22-1002 TCGA-22-1012 
       60.89       122.43         8.78        19.99         4.31        14.10 
TCGA-22-4594 TCGA-22-4595 TCGA-22-4599 TCGA-22-4604 TCGA-22-5473 TCGA-22-5478 
       48.33        24.13        38.17        13.12        63.52         0.79 
TCGA-22-5480 TCGA-22-5481 TCGA-22-5489 TCGA-33-4533 TCGA-33-4586 TCGA-33-6737 
       71.34        79.20        62.86       114.05        14.07        19.76 
TCGA-34-2596 TCGA-34-2604 TCGA-34-2609 TCGA-34-5231 TCGA-34-5236 TCGA-34-5239 
        2.63        31.50        31.23        50.24         9.04        23.24 
TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 
       30.94        18.12         4.96        47.80        74.07        44.71 
TCGA-39-5027 TCGA-39-5028 TCGA-39-5030 TCGA-39-5040 TCGA-43-2578 TCGA-43-3394 
       60.76         1.71         1.94        17.06        22.49        27.02 
TCGA-43-3920 TCGA-43-5670 TCGA-43-7657 TCGA-43-7658 TCGA-43-8116 TCGA-46-6025 
       33.07        18.05         1.58        66.51         6.35        10.65 
TCGA-46-6026 TCGA-52-7622 TCGA-52-7809 TCGA-52-7810 TCGA-56-7221 TCGA-56-7222 
       13.87        17.79         5.42        30.31         0.99         0.43 
TCGA-56-7580 TCGA-56-7730 TCGA-56-7822 TCGA-56-8503 TCGA-56-8626 TCGA-56-A49D 
        1.32         0.20         0.03         1.35         0.56         0.99 
TCGA-56-A4BX TCGA-56-A4BY TCGA-58-8386 TCGA-58-8387 TCGA-58-8388 TCGA-58-8390 
        1.51         0.99         0.03        13.25        12.43        29.95 
TCGA-58-8391 TCGA-58-8392 TCGA-58-8393 TCGA-58-A46J TCGA-58-A46L TCGA-58-A46M 
       71.24        16.47        34.78        64.87        36.59        23.24 
TCGA-60-2695 TCGA-60-2710 TCGA-60-2711 TCGA-60-2713 TCGA-60-2714 TCGA-60-2719 
       21.07        66.51        41.39        56.91        50.33        42.61 
TCGA-60-2720 TCGA-60-2723 TCGA-66-2727 TCGA-66-2734 TCGA-66-2753 TCGA-66-2755 
        3.16        35.90        16.96        43.10         1.02         0.92 
TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2767 TCGA-66-2769 
        0.99        20.98        25.02         0.99         2.01         7.07 
TCGA-66-2770 TCGA-66-2778 TCGA-66-2782 TCGA-66-2787 TCGA-66-2789 TCGA-66-2790 
       23.01        19.00        12.00        40.01         4.04        22.98 
TCGA-66-2792 TCGA-66-2793 TCGA-66-2800 TCGA-68-7756 TCGA-68-8251 TCGA-77-6842 
       30.02        10.06        49.05         6.64         3.12        29.56 
TCGA-77-7139 TCGA-77-7142 TCGA-77-7463 TCGA-77-8136 TCGA-77-8139 TCGA-77-8140 
       89.95        42.25        46.78        39.09       104.09        11.54 
TCGA-77-8143 TCGA-77-8150 TCGA-77-8153 TCGA-77-8156 TCGA-77-A5GH TCGA-85-6561 
       26.40        54.41        55.33         0.33        23.44         0.79 
TCGA-85-6798 TCGA-85-7698 TCGA-85-7699 TCGA-85-7950 TCGA-85-8071 TCGA-85-8353 
        1.12         1.61         0.03         1.97        14.07         1.78 
TCGA-85-8355 TCGA-85-8580 TCGA-85-8664 TCGA-85-8666 TCGA-85-A4QR TCGA-90-7767 
        0.66        14.60         0.10        15.58         0.82         2.93 
TCGA-90-A4ED TCGA-90-A4EE TCGA-92-8064 TCGA-92-8065 TCGA-94-7557 TCGA-96-8169 
        8.02        10.88         5.26         2.27         0.16         6.18 
TCGA-96-A4JK TCGA-NC-A5HG 
        8.98        50.86 

$`16Q LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07        79.46        46.52        11.34 
TCGA-18-3414 TCGA-18-3416 TCGA-18-3417 TCGA-18-3421 TCGA-18-4086 TCGA-18-4721 
       13.02        28.34        24.92        43.76         2.79        90.51 
TCGA-18-5595 TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 TCGA-21-1077 TCGA-21-1078 
       27.16        46.88        99.16        70.13        34.78        15.55 
TCGA-21-1079 TCGA-21-1081 TCGA-21-1082 TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 
       31.69         9.30       119.80        31.63        88.08        41.69 
TCGA-21-5786 TCGA-21-5787 TCGA-21-A5DI TCGA-22-0944 TCGA-22-1000 TCGA-22-1005 
       33.93        10.82        32.19         7.33        14.93        64.21 
TCGA-22-1011 TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 TCGA-22-4593 TCGA-22-4596 
        1.74        27.02        48.82        20.45        35.08         0.56 
TCGA-22-4601 TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 
       34.75        32.02        19.30         9.53        11.77        31.73 
TCGA-22-5472 TCGA-22-5474 TCGA-22-5477 TCGA-22-5479 TCGA-22-5482 TCGA-22-5483 
       64.90        14.60        44.22        54.28        11.74        18.84 
TCGA-22-5485 TCGA-22-5491 TCGA-22-5492 TCGA-22-A5C4 TCGA-33-4532 TCGA-33-4538 
       30.08        56.32        16.60         0.95         7.63        97.94 
TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4587 TCGA-33-4589 
       43.10       173.79       103.53       141.34        54.44        10.98 
TCGA-33-6738 TCGA-34-2600 TCGA-34-2605 TCGA-34-2608 TCGA-34-5232 TCGA-34-5234 
       26.99        61.61        28.96        32.84        67.79        56.38 
TCGA-34-5240 TCGA-34-5241 TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 
       12.00        14.07         1.08         3.95         0.43         0.39 
TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 
        6.54         8.09         7.46         7.82         6.81         0.39 
TCGA-37-5819 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5029 TCGA-39-5031 
        3.39        68.58        55.17        70.03        24.33        27.35 
TCGA-39-5034 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2576 
       36.39        15.58        35.64        35.70        17.88        40.21 
TCGA-43-2581 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 
       38.66        11.47        12.36        24.89        10.19         5.42 
TCGA-43-6773 TCGA-43-7656 TCGA-43-8115 TCGA-43-8118 TCGA-43-A474 TCGA-43-A475 
        3.78         6.97         6.64         2.93        11.61         9.73 
TCGA-43-A56V TCGA-46-3768 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-52-7811 
        5.06         9.96         0.39         0.39        29.95         8.75 
TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 TCGA-56-5898 TCGA-56-6545 TCGA-56-6546 
       27.45        28.93         0.10        18.25         2.04         1.02 
TCGA-56-7223 TCGA-56-7579 TCGA-56-7582 TCGA-56-8504 TCGA-56-8622 TCGA-56-8624 
        0.99         1.45         0.85         5.82         1.78         1.18 
TCGA-56-8625 TCGA-56-8628 TCGA-56-8629 TCGA-56-A4ZJ TCGA-56-A4ZK TCGA-56-A5DS 
        2.07         0.53         1.12         1.02         0.13         0.26 
TCGA-58-A46K TCGA-58-A46N TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 
       34.36        17.72         3.58        12.23        10.22        96.82 
TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2712 
       37.94        92.71        21.70        80.42        49.48         9.01 
TCGA-60-2715 TCGA-60-2716 TCGA-60-2721 TCGA-60-2722 TCGA-60-2724 TCGA-60-2725 
       35.34        48.49        32.28        29.85        23.57        26.79 
TCGA-60-2726 TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2756 
       11.77         2.01        21.07         0.99         2.01         0.99 
TCGA-66-2765 TCGA-66-2766 TCGA-66-2768 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 
        2.01         1.02         2.01        19.00         3.02         2.01 
TCGA-66-2780 TCGA-66-2781 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2788 
       12.03         3.98        24.95         1.94        25.97        22.98 
TCGA-66-2791 TCGA-66-2794 TCGA-66-2795 TCGA-68-7755 TCGA-68-7757 TCGA-68-8250 
        5.03        54.08         4.01         2.73         6.94         8.02 
TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 TCGA-77-7140 TCGA-77-7141 
       73.08        75.09        23.28        11.18        20.78         0.49 
TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 TCGA-77-7465 TCGA-77-8007 TCGA-77-8008 
       70.09       106.95         0.16        15.75         6.51        86.76 
TCGA-77-8009 TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 TCGA-77-8133 TCGA-77-8138 
       53.95        37.81        82.92        12.59        53.92        17.69 
TCGA-77-8144 TCGA-77-8145 TCGA-77-8148 TCGA-77-8154 TCGA-77-A5FZ TCGA-77-A5G3 
       27.39         6.97         9.63        35.90       126.18       117.57 
TCGA-77-A5GB TCGA-85-6560 TCGA-85-7696 TCGA-85-7697 TCGA-85-7843 TCGA-85-7844 
       30.81         0.36         0.59         0.33         1.15         1.25 
TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 TCGA-85-8072 TCGA-85-8276 
        0.85         1.97         0.53        16.77         1.18         0.43 
TCGA-85-8277 TCGA-85-8287 TCGA-85-8288 TCGA-85-8350 TCGA-85-8351 TCGA-85-8352 
        0.36         1.45         1.78         1.97         1.81         2.20 
TCGA-85-8354 TCGA-85-8479 TCGA-85-8481 TCGA-85-8582 TCGA-85-A4CL TCGA-85-A50M 
        2.01         0.72         0.66        13.91         0.46         0.62 
TCGA-85-A513 TCGA-85-A53L TCGA-90-6837 TCGA-90-7766 TCGA-90-7769 TCGA-90-7964 
        0.79         0.43        24.89         9.50        11.77        14.07 
TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 TCGA-94-7033 TCGA-94-7943 TCGA-96-7544 
        2.70         3.48         4.01         2.86        11.70        39.88 
TCGA-96-7545 TCGA-96-8170 TCGA-96-A4JL TCGA-98-7454 TCGA-98-8020 TCGA-98-8021 
       44.15         6.90         6.02         8.42         2.73        13.58 
TCGA-98-8022 TCGA-98-8023 TCGA-J1-A4AH TCGA-L3-A4E7 TCGA-L3-A524 TCGA-LA-A446 
        7.33        10.13         7.30         1.15        14.76         1.18 
TCGA-MF-A522 TCGA-NC-A5HE TCGA-NC-A5HI 
        3.02        56.61        37.32 

  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
              0.03               0.10 
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
            122.43             173.79 
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
            16.025             12.030 
[1] "0.0 - 122.4 (16.0)" "0.1 - 173.8 (12.0)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-22-A5C4         TCGA-33-4532         TCGA-33-4533 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-33-4538         TCGA-33-4547         TCGA-33-4566 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-33-4582         TCGA-33-4583         TCGA-33-4586 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-33-4587         TCGA-33-4589         TCGA-33-6737 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-33-6738         TCGA-34-2596         TCGA-34-2600 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-34-2604         TCGA-34-2605         TCGA-34-2608 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-34-2609         TCGA-34-5231         TCGA-34-5232 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-34-5234         TCGA-34-5236         TCGA-34-5239 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-34-5240         TCGA-34-5241         TCGA-34-5927 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-34-5928         TCGA-34-5929         TCGA-34-7107 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-3792 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4132 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-37-4133         TCGA-37-4135         TCGA-37-4141 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-37-5819         TCGA-39-5011         TCGA-39-5016 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-39-5019         TCGA-39-5021         TCGA-39-5022 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-39-5024         TCGA-39-5027         TCGA-39-5028 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-39-5029         TCGA-39-5030         TCGA-39-5031 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-39-5034         TCGA-39-5035         TCGA-39-5036 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-39-5037         TCGA-39-5039         TCGA-39-5040 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-43-8115         TCGA-43-8116         TCGA-43-8118 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-43-A474         TCGA-43-A475         TCGA-43-A56V 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-46-3768         TCGA-46-6025         TCGA-46-6026 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-51-4079         TCGA-51-4080         TCGA-51-4081 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-52-7622         TCGA-52-7809         TCGA-52-7810 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-52-7811         TCGA-52-7812         TCGA-56-1622 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-56-5897         TCGA-56-5898         TCGA-56-6545 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-56-6546         TCGA-56-7221         TCGA-56-7222 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
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"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-77-8143         TCGA-77-8144         TCGA-77-8145 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-77-8148         TCGA-77-8150         TCGA-77-8153 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-77-8154         TCGA-77-8156         TCGA-77-A5FZ 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-77-A5G3         TCGA-77-A5GB         TCGA-77-A5GH 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-96-8169         TCGA-96-8170         TCGA-96-A4JK 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-96-A4JL         TCGA-98-7454         TCGA-98-8020 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-LA-A446         TCGA-MF-A522         TCGA-NC-A5HE 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D69V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  16Q LOSS MUTATED         0       19       48        0        16        29
  16Q LOSS WILD-TYPE       1       49       85        1        34        42
                    vv
clus                 STAGE IIIA STAGE IIIB STAGE IV
  16Q LOSS MUTATED           20          8        1
  16Q LOSS WILD-TYPE         34         12        4
D69V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  16Q LOSS MUTATED    26  92  18   7
  16Q LOSS WILD-TYPE  67 158  26  12
D69V4, multiclass
    clus
vv   16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  T1               26                 67
  T2               92                158
  T3               18                 26
  T4                7                 12
                    vv
clus                  N0  N1  N2  N3
  16Q LOSS MUTATED    90  37  12   3
  16Q LOSS WILD-TYPE 163  72  22   2
D69V5, multiclass
    clus
vv   16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  N0               90                163
  N1               37                 72
  N2               12                 22
  N3                3                  2
                    vv
clus                  M0  M1  MX
  16Q LOSS MUTATED   128   1  11
  16Q LOSS WILD-TYPE 220   4  36
D69V6, multiclass
    clus
vv   16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  M0              128                220
  M1                1                  4
  MX               11                 36
D69V7, binary
                    cls
clus                   0   1
  16Q LOSS MUTATED    43 100
  16Q LOSS WILD-TYPE  58 205
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16Q LOSS MUTATED     43  100
  16Q LOSS WILD-TYPE   58  205
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  FEMALE               43                 58
  MALE                100                205
D69V8, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  16Q LOSS MUTATED                                       6
  16Q LOSS WILD-TYPE                                     6
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  16Q LOSS MUTATED                                        0
  16Q LOSS WILD-TYPE                                      6
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  16Q LOSS MUTATED                                         0
  16Q LOSS WILD-TYPE                                       1
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  16Q LOSS MUTATED                                                           137
  16Q LOSS WILD-TYPE                                                         250
D69V9, multiclass
                                                             clus
vv                                                            16Q LOSS MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      6
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                     0
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                    0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              137
                                                             clus
vv                                                            16Q LOSS WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                        6
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                       6
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                      1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                250
D69V10, binary
                    cls
clus                   0   1
  16Q LOSS MUTATED     6 137
  16Q LOSS WILD-TYPE   6 257
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16Q LOSS MUTATED      6  137
  16Q LOSS WILD-TYPE    6  257
     clus
vv    16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  NO                 6                  6
  YES              137                257
D69V11, continuous
D69V12, continuous
                    vv
clus                  R0  R1  R2  RX
  16Q LOSS MUTATED   113   1   2   4
  16Q LOSS WILD-TYPE 217   7   2  14
D69V13, multiclass
    clus
vv   16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  R0              113                217
  R1                1                  7
  R2                2                  2
  RX                4                 14

Clustering(70) Variable = 17P LOSS MUTATION ANALYSIS
D70V1, survival
                    sevent
clus2                  0   1
  17P LOSS MUTATED   138  80
  17P LOSS WILD-TYPE 101  58
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
               218                159 
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
                80                 58 
$`17P LOSS MUTATED`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3410 TCGA-18-3411 TCGA-18-3414 TCGA-18-3415 
       12.16         4.47         4.80        46.52        13.02        59.51 
TCGA-18-3416 TCGA-18-3419 TCGA-18-3421 TCGA-18-4721 TCGA-21-1070 TCGA-21-1075 
       28.34         1.61        43.76        90.51       119.54        70.13 
TCGA-21-1077 TCGA-21-1080 TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 
       34.78       122.43       119.80         8.78        31.63        88.08 
TCGA-21-5786 TCGA-21-5787 TCGA-21-A5DI TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 
       33.93        10.82        32.19         7.33        14.93         4.31 
TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4594 TCGA-22-4595 
        1.74        14.10        27.02        20.45        48.33        24.13 
TCGA-22-4596 TCGA-22-4599 TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 
        0.56        38.17        13.12        32.02        19.30         9.53 
TCGA-22-5472 TCGA-22-5473 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5481 
       64.90        63.52        44.22         0.79        71.34        79.20 
TCGA-22-5483 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-22-A5C4 TCGA-33-4547 
       18.84        62.86        56.32        16.60         0.95        43.10 
TCGA-33-4583 TCGA-33-4586 TCGA-33-4587 TCGA-33-6738 TCGA-34-2600 TCGA-34-2604 
      141.34        14.07        54.44        26.99        61.61        31.50 
TCGA-34-2608 TCGA-34-5231 TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 TCGA-37-4133 
       32.84        50.24         3.95         0.43         0.39         7.82 
TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5024 TCGA-39-5027 
        6.81         0.39         3.39        74.07        70.03        60.76 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5034 TCGA-39-5035 TCGA-39-5040 TCGA-43-2576 
       24.33         1.94        36.39        15.58        17.06        40.21 
TCGA-43-2581 TCGA-43-3394 TCGA-43-5668 TCGA-43-5670 TCGA-43-6143 TCGA-43-7656 
       38.66        27.02        11.47        18.05        12.36         6.97 
TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 TCGA-43-A474 TCGA-43-A475 TCGA-43-A56V 
       66.51         6.64         6.35        11.61         9.73         5.06 
TCGA-46-6026 TCGA-51-4080 TCGA-52-7622 TCGA-52-7810 TCGA-52-7812 TCGA-56-1622 
       13.87         0.39        17.79        30.31        27.45        28.93 
TCGA-56-5897 TCGA-56-5898 TCGA-56-7223 TCGA-56-7579 TCGA-56-7580 TCGA-56-7822 
        0.10        18.25         0.99         1.45         1.32         0.03 
TCGA-56-8503 TCGA-56-8622 TCGA-56-8624 TCGA-56-8625 TCGA-56-8626 TCGA-56-8628 
        1.35         1.78         1.18         2.07         0.56         0.53 
TCGA-56-8629 TCGA-56-A49D TCGA-56-A4BX TCGA-56-A4BY TCGA-56-A4ZJ TCGA-58-8386 
        1.12         0.99         1.51         0.99         1.02         0.03 
TCGA-58-8387 TCGA-58-8388 TCGA-58-8390 TCGA-58-8393 TCGA-58-A46L TCGA-58-A46M 
       13.25        12.43        29.95        34.78        36.59        23.24 
TCGA-60-2695 TCGA-60-2696 TCGA-60-2698 TCGA-60-2703 TCGA-60-2706 TCGA-60-2707 
       21.07         3.58        10.22        96.82        92.71        21.70 
TCGA-60-2708 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 
       80.42        66.51        41.39         9.01        56.91        50.33 
TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2725 
       42.61         3.16        32.28        29.85        35.90        26.79 
TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2753 TCGA-66-2754 TCGA-66-2757 
       16.96        43.10        21.07         1.02         2.01         0.99 
TCGA-66-2759 TCGA-66-2763 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 
       25.02         0.99         1.02         2.01         2.01         7.07 
TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 
       19.00         3.02         2.01        12.03         3.98        12.00 
TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 
       24.95         1.94        25.97        22.98         4.04         5.03 
TCGA-66-2793 TCGA-66-2795 TCGA-68-7757 TCGA-77-6842 TCGA-77-6844 TCGA-77-6845 
       10.06         4.01         6.94        29.56        75.09        23.28 
TCGA-77-7139 TCGA-77-7141 TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 TCGA-77-7465 
       89.95         0.49        70.09       106.95         0.16        15.75 
TCGA-77-8008 TCGA-77-8009 TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 TCGA-77-8133 
       86.76        53.95        37.81        82.92        12.59        53.92 
TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 TCGA-77-8144 TCGA-77-8145 
       39.09        17.69       104.09        11.54        27.39         6.97 
TCGA-77-8148 TCGA-77-8150 TCGA-77-8154 TCGA-77-A5G3 TCGA-77-A5GB TCGA-77-A5GH 
        9.63        54.41        35.90       117.57        30.81        23.44 
TCGA-85-6560 TCGA-85-7696 TCGA-85-7697 TCGA-85-7844 TCGA-85-8052 TCGA-85-8070 
        0.36         0.59         0.33         1.25         0.53        16.77 
TCGA-85-8276 TCGA-85-8287 TCGA-85-8288 TCGA-85-8479 TCGA-85-8666 TCGA-85-A4CL 
        0.43         1.45         1.78         0.72        15.58         0.46 
TCGA-85-A4QR TCGA-85-A513 TCGA-85-A53L TCGA-90-7766 TCGA-90-7767 TCGA-90-7964 
        0.82         0.79         0.43         9.50         2.93        14.07 
TCGA-90-A4ED TCGA-92-7341 TCGA-92-8063 TCGA-92-8065 TCGA-94-7033 TCGA-96-7544 
        8.02         3.48         4.01         2.27         2.86        39.88 
TCGA-96-7545 TCGA-96-8170 TCGA-96-A4JL TCGA-98-8021 TCGA-98-8022 TCGA-L3-A4E7 
       44.15         6.90         6.02        13.58         7.33         1.15 
TCGA-NC-A5HG TCGA-NC-A5HI 
       50.86        37.32 

$`17P LOSS WILD-TYPE`
TCGA-18-3408 TCGA-18-3409 TCGA-18-3412 TCGA-18-3417 TCGA-18-4083 TCGA-18-4086 
       81.07        79.46        11.34        24.92         6.15         2.79 
TCGA-18-5592 TCGA-18-5595 TCGA-21-1071 TCGA-21-1072 TCGA-21-1076 TCGA-21-1078 
        3.02        27.16        46.88        99.16        60.89        15.55 
TCGA-21-1079 TCGA-21-1081 TCGA-21-5784 TCGA-22-0940 TCGA-22-1005 TCGA-22-1017 
       31.69         9.30        41.69        19.99        64.21        48.82 
TCGA-22-4593 TCGA-22-4601 TCGA-22-4613 TCGA-22-5471 TCGA-22-5474 TCGA-22-5479 
       35.08        34.75        11.77        31.73        14.60        54.28 
TCGA-22-5482 TCGA-22-5485 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4566 
       11.74        30.08         7.63       114.05        97.94       173.79 
TCGA-33-4582 TCGA-33-4589 TCGA-33-6737 TCGA-34-2596 TCGA-34-2605 TCGA-34-2609 
      103.53        10.98        19.76         2.63        28.96        31.23 
TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 
       67.79        56.38         9.04        23.24        12.00        14.07 
TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-34-7107 TCGA-37-4129 TCGA-37-4130 
       30.94        18.12         4.96         1.08         6.54         8.09 
TCGA-37-4132 TCGA-39-5011 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5028 
        7.46        47.80        44.71        68.58        55.17         1.71 
TCGA-39-5031 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3920 
       27.35        35.64        35.70        17.88        22.49        33.07 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 TCGA-43-7657 TCGA-43-8118 
       24.89        10.19         5.42         3.78         1.58         2.93 
TCGA-46-3768 TCGA-46-6025 TCGA-51-4079 TCGA-51-4081 TCGA-52-7809 TCGA-52-7811 
        9.96        10.65         0.39        29.95         5.42         8.75 
TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 TCGA-56-7582 TCGA-56-7730 
        2.04         1.02         0.99         0.43         0.85         0.20 
TCGA-56-8504 TCGA-56-A4ZK TCGA-56-A5DS TCGA-58-8391 TCGA-58-8392 TCGA-58-A46J 
        5.82         0.13         0.26        71.24        16.47        64.87 
TCGA-58-A46K TCGA-58-A46N TCGA-60-2697 TCGA-60-2704 TCGA-60-2709 TCGA-60-2715 
       34.36        17.72        12.23        37.94        49.48        35.34 
TCGA-60-2716 TCGA-60-2724 TCGA-60-2726 TCGA-66-2737 TCGA-66-2744 TCGA-66-2755 
       48.49        23.57        11.77         2.01         0.99         0.92 
TCGA-66-2756 TCGA-66-2758 TCGA-66-2765 TCGA-66-2770 TCGA-66-2778 TCGA-66-2787 
        0.99        20.98         2.01        23.01        19.00        40.01 
TCGA-66-2790 TCGA-66-2792 TCGA-66-2794 TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 
       22.98        30.02        54.08        49.05         2.73         6.64 
TCGA-68-8250 TCGA-68-8251 TCGA-77-6843 TCGA-77-7138 TCGA-77-7140 TCGA-77-7142 
        8.02         3.12        73.08        11.18        20.78        42.25 
TCGA-77-7463 TCGA-77-8007 TCGA-77-8143 TCGA-77-8153 TCGA-77-8156 TCGA-77-A5FZ 
       46.78         6.51        26.40        55.33         0.33       126.18 
TCGA-85-6561 TCGA-85-6798 TCGA-85-7698 TCGA-85-7699 TCGA-85-7843 TCGA-85-7950 
        0.79         1.12         1.61         0.03         1.15         1.97 
TCGA-85-8048 TCGA-85-8049 TCGA-85-8071 TCGA-85-8072 TCGA-85-8277 TCGA-85-8350 
        0.85         1.97        14.07         1.18         0.36         1.97 
TCGA-85-8351 TCGA-85-8352 TCGA-85-8353 TCGA-85-8354 TCGA-85-8355 TCGA-85-8481 
        1.81         2.20         1.78         2.01         0.66         0.66 
TCGA-85-8580 TCGA-85-8582 TCGA-85-8664 TCGA-85-A50M TCGA-90-6837 TCGA-90-7769 
       14.60        13.91         0.10         0.62        24.89        11.77 
TCGA-90-A4EE TCGA-92-7340 TCGA-92-8064 TCGA-94-7557 TCGA-94-7943 TCGA-96-8169 
       10.88         2.70         5.26         0.16        11.70         6.18 
TCGA-96-A4JK TCGA-98-7454 TCGA-98-8020 TCGA-98-8023 TCGA-J1-A4AH TCGA-L3-A524 
        8.98         8.42         2.73        10.13         7.30        14.76 
TCGA-LA-A446 TCGA-MF-A522 TCGA-NC-A5HE 
        1.18         3.02        56.61 

  17P LOSS MUTATED 17P LOSS WILD-TYPE 
              0.03               0.03 
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
            141.34             173.79 
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
            14.515             11.770 
[1] "0.0 - 141.3 (14.5)" "0.0 - 173.8 (11.8)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
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"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
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  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
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  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
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  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
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  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
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"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
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  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
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"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
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"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
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"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
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  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
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  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
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  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
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  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
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"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
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"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
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  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-56-A4BX         TCGA-56-A4BY         TCGA-56-A4ZJ 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
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  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-52-7811         TCGA-52-7812         TCGA-56-1622 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-56-5897         TCGA-56-5898         TCGA-56-6545 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-56-6546         TCGA-56-7221         TCGA-56-7222 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-56-7223         TCGA-56-7579         TCGA-56-7580 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-56-7582         TCGA-56-7730         TCGA-56-7822 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-56-8503         TCGA-56-8504         TCGA-56-8622 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-56-8624         TCGA-56-8625         TCGA-56-8626 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-56-8628         TCGA-56-8629         TCGA-56-A49D 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-56-A4BX         TCGA-56-A4BY         TCGA-56-A4ZJ 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-56-A4ZK         TCGA-56-A5DS         TCGA-58-8386 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-58-8387         TCGA-58-8388         TCGA-58-8390 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-58-8391         TCGA-58-8392         TCGA-58-8393 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-58-A46J         TCGA-58-A46K         TCGA-58-A46L 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-58-A46M         TCGA-58-A46N         TCGA-60-2695 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-60-2696         TCGA-60-2697         TCGA-60-2698 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-60-2703         TCGA-60-2704         TCGA-60-2706 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2756 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-66-2770         TCGA-66-2771         TCGA-66-2773 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-66-2785         TCGA-66-2786         TCGA-66-2787 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-68-7755         TCGA-68-7756         TCGA-68-7757 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-68-8250         TCGA-68-8251         TCGA-77-6842 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-77-6843         TCGA-77-6844         TCGA-77-6845 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-77-7138         TCGA-77-7139         TCGA-77-7140 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-77-7141         TCGA-77-7142         TCGA-77-7335 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-77-7337         TCGA-77-7338         TCGA-77-7463 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-77-7465         TCGA-77-8007         TCGA-77-8008 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-77-8009         TCGA-77-8128         TCGA-77-8130 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-77-8131         TCGA-77-8133         TCGA-77-8136 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-77-8138         TCGA-77-8139         TCGA-77-8140 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-77-8143         TCGA-77-8144         TCGA-77-8145 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-77-8148         TCGA-77-8150         TCGA-77-8153 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-77-8154         TCGA-77-8156         TCGA-77-A5FZ 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-77-A5G3         TCGA-77-A5GB         TCGA-77-A5GH 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-96-8169         TCGA-96-8170         TCGA-96-A4JK 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-96-A4JL         TCGA-98-7454         TCGA-98-8020 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-LA-A446         TCGA-MF-A522         TCGA-NC-A5HE 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" 
[1] "hr=" "1.1"
D70V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  17P LOSS MUTATED         1       41       73        0        29        39
  17P LOSS WILD-TYPE       0       27       60        1        21        32
                    vv
clus                 STAGE IIIA STAGE IIIB STAGE IV
  17P LOSS MUTATED           35         12        3
  17P LOSS WILD-TYPE         19          8        2
D70V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  17P LOSS MUTATED    57 141  27   8
  17P LOSS WILD-TYPE  36 109  17  11
D70V4, multiclass
    clus
vv   17P LOSS MUTATED 17P LOSS WILD-TYPE
  T1               57                 36
  T2              141                109
  T3               27                 17
  T4                8                 11
                    vv
clus                  N0  N1  N2  N3
  17P LOSS MUTATED   141  58  26   4
  17P LOSS WILD-TYPE 112  51   8   1
D70V5, multiclass
    clus
vv   17P LOSS MUTATED 17P LOSS WILD-TYPE
  N0              141                112
  N1               58                 51
  N2               26                  8
  N3                4                  1
                    vv
clus                  M0  M1  MX
  17P LOSS MUTATED   201   3  26
  17P LOSS WILD-TYPE 147   2  21
D70V6, multiclass
    clus
vv   17P LOSS MUTATED 17P LOSS WILD-TYPE
  M0              201                147
  M1                3                  2
  MX               26                 21
D70V7, binary
                    cls
clus                   0   1
  17P LOSS MUTATED    58 175
  17P LOSS WILD-TYPE  43 130
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17P LOSS MUTATED     58  175
  17P LOSS WILD-TYPE   43  130
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  FEMALE               58                 43
  MALE                175                130
D70V8, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  17P LOSS MUTATED                                       7
  17P LOSS WILD-TYPE                                     5
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  17P LOSS MUTATED                                        2
  17P LOSS WILD-TYPE                                      4
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  17P LOSS MUTATED                                         1
  17P LOSS WILD-TYPE                                       0
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  17P LOSS MUTATED                                                           223
  17P LOSS WILD-TYPE                                                         164
D70V9, multiclass
                                                             clus
vv                                                            17P LOSS MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      7
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                     2
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              223
                                                             clus
vv                                                            17P LOSS WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                        5
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                       4
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                      0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                164
D70V10, binary
                    cls
clus                   0   1
  17P LOSS MUTATED    10 223
  17P LOSS WILD-TYPE   2 171
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17P LOSS MUTATED     10  223
  17P LOSS WILD-TYPE    2  171
     clus
vv    17P LOSS MUTATED 17P LOSS WILD-TYPE
  NO                10                  2
  YES              223                171
D70V11, continuous
D70V12, continuous
                    vv
clus                  R0  R1  R2  RX
  17P LOSS MUTATED   199   5   2   8
  17P LOSS WILD-TYPE 131   3   2  10
D70V13, multiclass
    clus
vv   17P LOSS MUTATED 17P LOSS WILD-TYPE
  R0              199                131
  R1                5                  3
  R2                2                  2
  RX                8                 10

Clustering(71) Variable = 17Q LOSS MUTATION ANALYSIS
D71V1, survival
                    sevent
clus2                  0   1
  17Q LOSS MUTATED    45  24
  17Q LOSS WILD-TYPE 194 114
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
                69                308 
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
                24                114 
$`17Q LOSS MUTATED`
TCGA-18-3414 TCGA-21-1070 TCGA-21-A5DI TCGA-22-1011 TCGA-22-1016 TCGA-22-4595 
       13.02       119.54        32.19         1.74        27.02        24.13 
TCGA-22-4596 TCGA-22-4605 TCGA-22-5472 TCGA-22-5478 TCGA-33-4583 TCGA-33-4587 
        0.56        32.02        64.90         0.79       141.34        54.44 
TCGA-34-2600 TCGA-34-5241 TCGA-37-4141 TCGA-39-5029 TCGA-39-5035 TCGA-39-5040 
       61.61        14.07         0.39        24.33        15.58        17.06 
TCGA-43-2581 TCGA-43-3394 TCGA-43-5670 TCGA-43-7656 TCGA-43-A56V TCGA-52-7622 
       38.66        27.02        18.05         6.97         5.06        17.79 
TCGA-52-7810 TCGA-56-5897 TCGA-56-5898 TCGA-56-7580 TCGA-56-7822 TCGA-56-8503 
       30.31         0.10        18.25         1.32         0.03         1.35 
TCGA-56-8624 TCGA-56-8628 TCGA-56-A4ZJ TCGA-58-8393 TCGA-60-2695 TCGA-60-2696 
        1.18         0.53         1.02        34.78        21.07         3.58 
TCGA-60-2706 TCGA-60-2708 TCGA-60-2711 TCGA-60-2714 TCGA-60-2719 TCGA-60-2720 
       92.71        80.42        41.39        50.33        42.61         3.16 
TCGA-60-2723 TCGA-66-2769 TCGA-66-2771 TCGA-66-2780 TCGA-66-2782 TCGA-66-2786 
       35.90         7.07        19.00        12.03        12.00        25.97 
TCGA-77-8008 TCGA-77-8130 TCGA-77-8131 TCGA-77-8133 TCGA-77-8138 TCGA-77-8144 
       86.76        82.92        12.59        53.92        17.69        27.39 
TCGA-77-8150 TCGA-77-A5GB TCGA-77-A5GH TCGA-85-7696 TCGA-85-7697 TCGA-85-7950 
       54.41        30.81        23.44         0.59         0.33         1.97 
TCGA-85-8479 TCGA-85-A513 TCGA-85-A53L TCGA-92-8063 TCGA-92-8065 TCGA-94-7557 
        0.72         0.79         0.43         4.01         2.27         0.16 
TCGA-96-A4JL TCGA-98-8021 TCGA-L3-A4E7 
        6.02        13.58         1.15 

$`17Q LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       11.34        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1071 
        6.15         2.79        90.51         3.02        27.16        46.88 
TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1079 
       99.16        70.13        60.89        34.78        15.55        31.69 
TCGA-21-1080 TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 
      122.43         9.30       119.80         8.78        31.63        88.08 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 
       41.69        33.93        10.82        19.99         7.33        14.93 
TCGA-22-1002 TCGA-22-1005 TCGA-22-1012 TCGA-22-1017 TCGA-22-4591 TCGA-22-4593 
        4.31        64.21        14.10        48.82        20.45        35.08 
TCGA-22-4594 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4609 
       48.33        38.17        34.75        13.12        19.30         9.53 
TCGA-22-4613 TCGA-22-5471 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5479 
       11.77        31.73        63.52        14.60        44.22        54.28 
TCGA-22-5480 TCGA-22-5481 TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 
       71.34        79.20        11.74        18.84        30.08        62.86 
TCGA-22-5491 TCGA-22-5492 TCGA-22-A5C4 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       56.32        16.60         0.95         7.63       114.05        97.94 
TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4586 TCGA-33-4589 TCGA-33-6737 
       43.10       173.79       103.53        14.07        10.98        19.76 
TCGA-33-6738 TCGA-34-2596 TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 
       26.99         2.63        31.50        28.96        32.84        31.23 
TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 
       50.24        67.79        56.38         9.04        23.24        12.00 
TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 
       30.94        18.12         4.96         1.08         3.95         0.43 
TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 
        0.39         6.54         8.09         7.46         7.82         6.81 
TCGA-37-5819 TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 
        3.39        47.80        74.07        44.71        68.58        55.17 
TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 
       70.03        60.76         1.71         1.94        27.35        36.39 
TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2576 TCGA-43-2578 TCGA-43-3920 
       35.64        35.70        17.88        40.21        22.49        33.07 
TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 
       11.47        12.36        24.89        10.19         5.42         3.78 
TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 TCGA-43-8118 TCGA-43-A474 
        1.58        66.51         6.64         6.35         2.93        11.61 
TCGA-43-A475 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 
        9.73         9.96        10.65        13.87         0.39         0.39 
TCGA-51-4081 TCGA-52-7809 TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 TCGA-56-6545 
       29.95         5.42         8.75        27.45        28.93         2.04 
TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 TCGA-56-7582 
        1.02         0.99         0.43         0.99         1.45         0.85 
TCGA-56-7730 TCGA-56-8504 TCGA-56-8622 TCGA-56-8625 TCGA-56-8626 TCGA-56-8629 
        0.20         5.82         1.78         2.07         0.56         1.12 
TCGA-56-A49D TCGA-56-A4BX TCGA-56-A4BY TCGA-56-A4ZK TCGA-56-A5DS TCGA-58-8386 
        0.99         1.51         0.99         0.13         0.26         0.03 
TCGA-58-8387 TCGA-58-8388 TCGA-58-8390 TCGA-58-8391 TCGA-58-8392 TCGA-58-A46J 
       13.25        12.43        29.95        71.24        16.47        64.87 
TCGA-58-A46K TCGA-58-A46L TCGA-58-A46M TCGA-58-A46N TCGA-60-2697 TCGA-60-2698 
       34.36        36.59        23.24        17.72        12.23        10.22 
TCGA-60-2703 TCGA-60-2704 TCGA-60-2707 TCGA-60-2709 TCGA-60-2710 TCGA-60-2712 
       96.82        37.94        21.70        49.48        66.51         9.01 
TCGA-60-2713 TCGA-60-2715 TCGA-60-2716 TCGA-60-2721 TCGA-60-2722 TCGA-60-2724 
       56.91        35.34        48.49        32.28        29.85        23.57 
TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 
       26.79        11.77        16.96        43.10         2.01        21.07 
TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 
        0.99         1.02         2.01         0.92         0.99         0.99 
TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 
       20.98        25.02         0.99         2.01         1.02         2.01 
TCGA-66-2768 TCGA-66-2770 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2781 
        2.01        23.01         3.02         2.01        19.00         3.98 
TCGA-66-2783 TCGA-66-2785 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 
       24.95         1.94        40.01        22.98         4.04        22.98 
TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 
        5.03        30.02        10.06        54.08         4.01        49.05 
TCGA-68-7755 TCGA-68-7756 TCGA-68-7757 TCGA-68-8250 TCGA-68-8251 TCGA-77-6842 
        2.73         6.64         6.94         8.02         3.12        29.56 
TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 TCGA-77-7140 
       73.08        75.09        23.28        11.18        89.95        20.78 
TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 
        0.49        42.25        70.09       106.95         0.16        46.78 
TCGA-77-7465 TCGA-77-8007 TCGA-77-8009 TCGA-77-8128 TCGA-77-8136 TCGA-77-8139 
       15.75         6.51        53.95        37.81        39.09       104.09 
TCGA-77-8140 TCGA-77-8143 TCGA-77-8145 TCGA-77-8148 TCGA-77-8153 TCGA-77-8154 
       11.54        26.40         6.97         9.63        55.33        35.90 
TCGA-77-8156 TCGA-77-A5FZ TCGA-77-A5G3 TCGA-85-6560 TCGA-85-6561 TCGA-85-6798 
        0.33       126.18       117.57         0.36         0.79         1.12 
TCGA-85-7698 TCGA-85-7699 TCGA-85-7843 TCGA-85-7844 TCGA-85-8048 TCGA-85-8049 
        1.61         0.03         1.15         1.25         0.85         1.97 
TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 TCGA-85-8276 TCGA-85-8277 
        0.53        16.77        14.07         1.18         0.43         0.36 
TCGA-85-8287 TCGA-85-8288 TCGA-85-8350 TCGA-85-8351 TCGA-85-8352 TCGA-85-8353 
        1.45         1.78         1.97         1.81         2.20         1.78 
TCGA-85-8354 TCGA-85-8355 TCGA-85-8481 TCGA-85-8580 TCGA-85-8582 TCGA-85-8664 
        2.01         0.66         0.66        14.60        13.91         0.10 
TCGA-85-8666 TCGA-85-A4CL TCGA-85-A4QR TCGA-85-A50M TCGA-90-6837 TCGA-90-7766 
       15.58         0.46         0.82         0.62        24.89         9.50 
TCGA-90-7767 TCGA-90-7769 TCGA-90-7964 TCGA-90-A4ED TCGA-90-A4EE TCGA-92-7340 
        2.93        11.77        14.07         8.02        10.88         2.70 
TCGA-92-7341 TCGA-92-8064 TCGA-94-7033 TCGA-94-7943 TCGA-96-7544 TCGA-96-7545 
        3.48         5.26         2.86        11.70        39.88        44.15 
TCGA-96-8169 TCGA-96-8170 TCGA-96-A4JK TCGA-98-7454 TCGA-98-8020 TCGA-98-8022 
        6.18         6.90         8.98         8.42         2.73         7.33 
TCGA-98-8023 TCGA-J1-A4AH TCGA-L3-A524 TCGA-LA-A446 TCGA-MF-A522 TCGA-NC-A5HE 
       10.13         7.30        14.76         1.18         3.02        56.61 
TCGA-NC-A5HG TCGA-NC-A5HI 
       50.86        37.32 

  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
              0.03               0.03 
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
            141.34             173.79 
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
            17.060             12.395 
[1] "0.0 - 141.3 (17.1)" "0.0 - 173.8 (12.4)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-22-A5C4         TCGA-33-4532         TCGA-33-4533 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-33-4538         TCGA-33-4547         TCGA-33-4566 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-33-4582         TCGA-33-4583         TCGA-33-4586 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-33-4587         TCGA-33-4589         TCGA-33-6737 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-33-6738         TCGA-34-2596         TCGA-34-2600 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-34-2604         TCGA-34-2605         TCGA-34-2608 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-34-2609         TCGA-34-5231         TCGA-34-5232 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-34-5234         TCGA-34-5236         TCGA-34-5239 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-34-5240         TCGA-34-5241         TCGA-34-5927 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-34-5928         TCGA-34-5929         TCGA-34-7107 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-3792 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4132 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-37-4133         TCGA-37-4135         TCGA-37-4141 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-37-5819         TCGA-39-5011         TCGA-39-5016 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-39-5019         TCGA-39-5021         TCGA-39-5022 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-39-5024         TCGA-39-5027         TCGA-39-5028 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-39-5029         TCGA-39-5030         TCGA-39-5031 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-39-5034         TCGA-39-5035         TCGA-39-5036 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-39-5037         TCGA-39-5039         TCGA-39-5040 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-43-8118 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-43-A474         TCGA-43-A475         TCGA-43-A56V 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-46-3768         TCGA-46-6025         TCGA-46-6026 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-51-4079         TCGA-51-4080         TCGA-51-4081 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-52-7622         TCGA-52-7809         TCGA-52-7810 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-52-7811         TCGA-52-7812         TCGA-56-1622 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-56-5897         TCGA-56-5898         TCGA-56-6545 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-56-6546         TCGA-56-7221         TCGA-56-7222 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-56-7223         TCGA-56-7579         TCGA-56-7580 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-56-7582         TCGA-56-7730         TCGA-56-7822 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-56-8503         TCGA-56-8504         TCGA-56-8622 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-56-8624         TCGA-56-8625         TCGA-56-8626 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-56-8628         TCGA-56-8629         TCGA-56-A49D 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-56-A4BX         TCGA-56-A4BY         TCGA-56-A4ZJ 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-56-A4ZK         TCGA-56-A5DS         TCGA-58-8386 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-58-8387         TCGA-58-8388         TCGA-58-8390 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-58-8391         TCGA-58-8392         TCGA-58-8393 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-58-A46J         TCGA-58-A46K         TCGA-58-A46L 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-58-A46M         TCGA-58-A46N         TCGA-60-2695 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-60-2696         TCGA-60-2697         TCGA-60-2698 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-60-2703         TCGA-60-2704         TCGA-60-2706 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2756 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-66-2770         TCGA-66-2771         TCGA-66-2773 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-66-2785         TCGA-66-2786         TCGA-66-2787 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-68-7755         TCGA-68-7756         TCGA-68-7757 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-68-8250         TCGA-68-8251         TCGA-77-6842 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-77-6843         TCGA-77-6844         TCGA-77-6845 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-77-7138         TCGA-77-7139         TCGA-77-7140 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-77-7141         TCGA-77-7142         TCGA-77-7335 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-77-7337         TCGA-77-7338         TCGA-77-7463 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-77-7465         TCGA-77-8007         TCGA-77-8008 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-77-8009         TCGA-77-8128         TCGA-77-8130 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-77-8131         TCGA-77-8133         TCGA-77-8136 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-77-8138         TCGA-77-8139         TCGA-77-8140 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-77-8143         TCGA-77-8144         TCGA-77-8145 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-77-8148         TCGA-77-8150         TCGA-77-8153 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-77-8154         TCGA-77-8156         TCGA-77-A5FZ 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-77-A5G3         TCGA-77-A5GB         TCGA-77-A5GH 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
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        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-22-A5C4         TCGA-33-4532         TCGA-33-4533 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-33-4538         TCGA-33-4547         TCGA-33-4566 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-33-4582         TCGA-33-4583         TCGA-33-4586 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-33-4587         TCGA-33-4589         TCGA-33-6737 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-33-6738         TCGA-34-2596         TCGA-34-2600 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-34-2604         TCGA-34-2605         TCGA-34-2608 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-34-2609         TCGA-34-5231         TCGA-34-5232 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-34-5234         TCGA-34-5236         TCGA-34-5239 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-34-5240         TCGA-34-5241         TCGA-34-5927 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-34-5928         TCGA-34-5929         TCGA-34-7107 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-3792 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4132 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-37-4133         TCGA-37-4135         TCGA-37-4141 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-37-5819         TCGA-39-5011         TCGA-39-5016 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-39-5019         TCGA-39-5021         TCGA-39-5022 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-39-5024         TCGA-39-5027         TCGA-39-5028 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-39-5029         TCGA-39-5030         TCGA-39-5031 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-39-5034         TCGA-39-5035         TCGA-39-5036 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-39-5037         TCGA-39-5039         TCGA-39-5040 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-43-8118 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-43-A474         TCGA-43-A475         TCGA-43-A56V 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-46-3768         TCGA-46-6025         TCGA-46-6026 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-51-4079         TCGA-51-4080         TCGA-51-4081 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-52-7622         TCGA-52-7809         TCGA-52-7810 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-52-7811         TCGA-52-7812         TCGA-56-1622 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-56-5897         TCGA-56-5898         TCGA-56-6545 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-56-6546         TCGA-56-7221         TCGA-56-7222 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-56-7223         TCGA-56-7579         TCGA-56-7580 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-56-7582         TCGA-56-7730         TCGA-56-7822 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-56-8503         TCGA-56-8504         TCGA-56-8622 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-56-8624         TCGA-56-8625         TCGA-56-8626 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-56-8628         TCGA-56-8629         TCGA-56-A49D 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-56-A4BX         TCGA-56-A4BY         TCGA-56-A4ZJ 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-56-A4ZK         TCGA-56-A5DS         TCGA-58-8386 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-58-8387         TCGA-58-8388         TCGA-58-8390 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-58-8391         TCGA-58-8392         TCGA-58-8393 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-58-A46J         TCGA-58-A46K         TCGA-58-A46L 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-58-A46M         TCGA-58-A46N         TCGA-60-2695 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-60-2696         TCGA-60-2697         TCGA-60-2698 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-60-2703         TCGA-60-2704         TCGA-60-2706 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2756 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-66-2770         TCGA-66-2771         TCGA-66-2773 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-66-2785         TCGA-66-2786         TCGA-66-2787 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-68-7755         TCGA-68-7756         TCGA-68-7757 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-68-8250         TCGA-68-8251         TCGA-77-6842 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-77-6843         TCGA-77-6844         TCGA-77-6845 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-77-7138         TCGA-77-7139         TCGA-77-7140 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-77-7141         TCGA-77-7142         TCGA-77-7335 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-77-7337         TCGA-77-7338         TCGA-77-7463 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-77-7465         TCGA-77-8007         TCGA-77-8008 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-77-8009         TCGA-77-8128         TCGA-77-8130 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-77-8131         TCGA-77-8133         TCGA-77-8136 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-77-8138         TCGA-77-8139         TCGA-77-8140 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-77-8143         TCGA-77-8144         TCGA-77-8145 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-77-8148         TCGA-77-8150         TCGA-77-8153 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-77-8154         TCGA-77-8156         TCGA-77-A5FZ 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-77-A5G3         TCGA-77-A5GB         TCGA-77-A5GH 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-96-8169         TCGA-96-8170         TCGA-96-A4JK 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-96-A4JL         TCGA-98-7454         TCGA-98-8020 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-LA-A446         TCGA-MF-A522         TCGA-NC-A5HE 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D71V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  17Q LOSS MUTATED         1       16       28        0         8        12
  17Q LOSS WILD-TYPE       0       52      105        1        42        59
                    vv
clus                 STAGE IIIA STAGE IIIB STAGE IV
  17Q LOSS MUTATED            8          1        1
  17Q LOSS WILD-TYPE         46         19        4
D71V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  17Q LOSS MUTATED    22  40  11   2
  17Q LOSS WILD-TYPE  71 210  33  17
D71V4, multiclass
    clus
vv   17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  T1               22                 71
  T2               40                210
  T3               11                 33
  T4                2                 17
                    vv
clus                  N0  N1  N2  N3
  17Q LOSS MUTATED    56  11   5   0
  17Q LOSS WILD-TYPE 197  98  29   5
D71V5, multiclass
    clus
vv   17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  N0               56                197
  N1               11                 98
  N2                5                 29
  N3                0                  5
                    vv
clus                  M0  M1  MX
  17Q LOSS MUTATED    66   1   7
  17Q LOSS WILD-TYPE 282   4  40
D71V6, multiclass
    clus
vv   17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  M0               66                282
  M1                1                  4
  MX                7                 40
D71V7, binary
                    cls
clus                   0   1
  17Q LOSS MUTATED    27  48
  17Q LOSS WILD-TYPE  74 257
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17Q LOSS MUTATED     27   48
  17Q LOSS WILD-TYPE   74  257
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  FEMALE               27                 74
  MALE                 48                257
D71V8, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  17Q LOSS MUTATED                                       1
  17Q LOSS WILD-TYPE                                    11
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  17Q LOSS MUTATED                                        1
  17Q LOSS WILD-TYPE                                      5
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  17Q LOSS MUTATED                                         1
  17Q LOSS WILD-TYPE                                       0
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  17Q LOSS MUTATED                                                            72
  17Q LOSS WILD-TYPE                                                         315
D71V9, multiclass
                                                             clus
vv                                                            17Q LOSS MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      1
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                     1
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               72
                                                             clus
vv                                                            17Q LOSS WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       11
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                       5
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                      0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                315
D71V10, binary
                    cls
clus                   0   1
  17Q LOSS MUTATED     4  71
  17Q LOSS WILD-TYPE   8 323
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17Q LOSS MUTATED      4   71
  17Q LOSS WILD-TYPE    8  323
     clus
vv    17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  NO                 4                  8
  YES               71                323
D71V11, continuous
D71V12, continuous
                    vv
clus                  R0  R1  R2  RX
  17Q LOSS MUTATED    62   1   0   4
  17Q LOSS WILD-TYPE 268   7   4  14
D71V13, multiclass
    clus
vv   17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  R0               62                268
  R1                1                  7
  R2                0                  4
  RX                4                 14

Clustering(72) Variable = 18P LOSS MUTATION ANALYSIS
D72V1, survival
                    sevent
clus2                  0   1
  18P LOSS MUTATED    68  35
  18P LOSS WILD-TYPE 171 103
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
               103                274 
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
                35                103 
$`18P LOSS MUTATED`
TCGA-18-3414 TCGA-18-3415 TCGA-18-3417 TCGA-18-3421 TCGA-21-1070 TCGA-21-1071 
       13.02        59.51        24.92        43.76       119.54        46.88 
TCGA-21-1080 TCGA-21-5787 TCGA-21-A5DI TCGA-22-1000 TCGA-22-1012 TCGA-22-1016 
      122.43        10.82        32.19        14.93        14.10        27.02 
TCGA-22-1017 TCGA-22-4593 TCGA-22-4594 TCGA-22-4601 TCGA-22-5478 TCGA-22-5482 
       48.82        35.08        48.33        34.75         0.79        11.74 
TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4582 TCGA-33-4589 TCGA-33-6737 
      114.05        97.94        43.10       103.53        10.98        19.76 
TCGA-33-6738 TCGA-34-2608 TCGA-34-2609 TCGA-34-5241 TCGA-34-7107 TCGA-37-4130 
       26.99        32.84        31.23        14.07         1.08         8.09 
TCGA-37-4132 TCGA-37-4133 TCGA-39-5011 TCGA-39-5028 TCGA-39-5036 TCGA-43-3394 
        7.46         7.82        47.80         1.71        35.64        27.02 
TCGA-43-6647 TCGA-43-7656 TCGA-43-8115 TCGA-46-3768 TCGA-46-6025 TCGA-51-4079 
       24.89         6.97         6.64         9.96        10.65         0.39 
TCGA-52-7810 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-7221 TCGA-56-7222 
       30.31        28.93         0.10         2.04         0.99         0.43 
TCGA-56-8503 TCGA-56-8624 TCGA-56-8626 TCGA-56-8629 TCGA-56-A4ZK TCGA-58-A46K 
        1.35         1.18         0.56         1.12         0.13        34.36 
TCGA-58-A46M TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 TCGA-60-2720 TCGA-66-2744 
       23.24        92.71        21.70        80.42         3.16         0.99 
TCGA-66-2753 TCGA-66-2755 TCGA-66-2766 TCGA-66-2773 TCGA-66-2780 TCGA-66-2781 
        1.02         0.92         1.02         3.02        12.03         3.98 
TCGA-66-2785 TCGA-66-2786 TCGA-66-2790 TCGA-66-2791 TCGA-66-2792 TCGA-66-2795 
        1.94        25.97        22.98         5.03        30.02         4.01 
TCGA-68-7757 TCGA-68-8250 TCGA-77-6842 TCGA-77-8007 TCGA-77-8131 TCGA-77-8136 
        6.94         8.02        29.56         6.51        12.59        39.09 
TCGA-77-8139 TCGA-77-8140 TCGA-77-8144 TCGA-77-A5GH TCGA-85-6560 TCGA-85-7697 
      104.09        11.54        27.39        23.44         0.36         0.33 
TCGA-85-7950 TCGA-85-8287 TCGA-85-8355 TCGA-85-8481 TCGA-85-A4QR TCGA-85-A53L 
        1.97         1.45         0.66         0.66         0.82         0.43 
TCGA-90-7766 TCGA-90-7767 TCGA-90-A4ED TCGA-92-7341 TCGA-94-7557 TCGA-94-7943 
        9.50         2.93         8.02         3.48         0.16        11.70 
TCGA-96-8170 TCGA-96-A4JK TCGA-98-8020 TCGA-98-8023 TCGA-MF-A522 TCGA-NC-A5HE 
        6.90         8.98         2.73        10.13         3.02        56.61 
TCGA-NC-A5HG 
       50.86 

$`18P LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3416 TCGA-18-3419 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 
       11.34        28.34         1.61         6.15         2.79        90.51 
TCGA-18-5592 TCGA-18-5595 TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 
        3.02        27.16        99.16        70.13        60.89        34.78 
TCGA-21-1078 TCGA-21-1079 TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 
       15.55        31.69         9.30       119.80         8.78        31.63 
TCGA-21-5783 TCGA-21-5784 TCGA-21-5786 TCGA-22-0940 TCGA-22-0944 TCGA-22-1002 
       88.08        41.69        33.93        19.99         7.33         4.31 
TCGA-22-1005 TCGA-22-1011 TCGA-22-4591 TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 
       64.21         1.74        20.45        24.13         0.56        38.17 
TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 
       13.12        32.02        19.30         9.53        11.77        31.73 
TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5479 TCGA-22-5480 
       64.90        63.52        14.60        44.22        54.28        71.34 
TCGA-22-5481 TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 
       79.20        18.84        30.08        62.86        56.32        16.60 
TCGA-22-A5C4 TCGA-33-4532 TCGA-33-4566 TCGA-33-4583 TCGA-33-4586 TCGA-33-4587 
        0.95         7.63       173.79       141.34        14.07        54.44 
TCGA-34-2596 TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 TCGA-34-5231 TCGA-34-5232 
        2.63        61.61        31.50        28.96        50.24        67.79 
TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5927 TCGA-34-5928 
       56.38         9.04        23.24        12.00        30.94        18.12 
TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 TCGA-37-4135 
        4.96         3.95         0.43         0.39         6.54         6.81 
TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 
        0.39         3.39        74.07        44.71        68.58        55.17 
TCGA-39-5024 TCGA-39-5027 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 
       70.03        60.76        24.33         1.94        27.35        36.39 
TCGA-39-5035 TCGA-39-5037 TCGA-39-5039 TCGA-39-5040 TCGA-43-2576 TCGA-43-2578 
       15.58        35.70        17.88        17.06        40.21        22.49 
TCGA-43-2581 TCGA-43-3920 TCGA-43-5668 TCGA-43-5670 TCGA-43-6143 TCGA-43-6770 
       38.66        33.07        11.47        18.05        12.36        10.19 
TCGA-43-6771 TCGA-43-6773 TCGA-43-7657 TCGA-43-7658 TCGA-43-8116 TCGA-43-8118 
        5.42         3.78         1.58        66.51         6.35         2.93 
TCGA-43-A474 TCGA-43-A475 TCGA-43-A56V TCGA-46-6026 TCGA-51-4080 TCGA-51-4081 
       11.61         9.73         5.06        13.87         0.39        29.95 
TCGA-52-7622 TCGA-52-7809 TCGA-52-7811 TCGA-52-7812 TCGA-56-5898 TCGA-56-6546 
       17.79         5.42         8.75        27.45        18.25         1.02 
TCGA-56-7223 TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 TCGA-56-7730 TCGA-56-7822 
        0.99         1.45         1.32         0.85         0.20         0.03 
TCGA-56-8504 TCGA-56-8622 TCGA-56-8625 TCGA-56-8628 TCGA-56-A49D TCGA-56-A4BX 
        5.82         1.78         2.07         0.53         0.99         1.51 
TCGA-56-A4BY TCGA-56-A4ZJ TCGA-56-A5DS TCGA-58-8386 TCGA-58-8387 TCGA-58-8388 
        0.99         1.02         0.26         0.03        13.25        12.43 
TCGA-58-8390 TCGA-58-8391 TCGA-58-8392 TCGA-58-8393 TCGA-58-A46J TCGA-58-A46L 
       29.95        71.24        16.47        34.78        64.87        36.59 
TCGA-58-A46N TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 
       17.72        21.07         3.58        12.23        10.22        96.82 
TCGA-60-2704 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 
       37.94        49.48        66.51        41.39         9.01        56.91 
TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 TCGA-60-2721 TCGA-60-2722 
       50.33        35.34        48.49        42.61        32.28        29.85 
TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 
       35.90        23.57        26.79        11.77        16.96        43.10 
TCGA-66-2737 TCGA-66-2742 TCGA-66-2754 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 
        2.01        21.07         2.01         0.99         0.99        20.98 
TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 
       25.02         0.99         2.01         2.01         2.01         7.07 
TCGA-66-2770 TCGA-66-2771 TCGA-66-2777 TCGA-66-2778 TCGA-66-2782 TCGA-66-2783 
       23.01        19.00         2.01        19.00        12.00        24.95 
TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2793 TCGA-66-2794 TCGA-66-2800 
       40.01        22.98         4.04        10.06        54.08        49.05 
TCGA-68-7755 TCGA-68-7756 TCGA-68-8251 TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 
        2.73         6.64         3.12        73.08        75.09        23.28 
TCGA-77-7138 TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 
       11.18        89.95        20.78         0.49        42.25        70.09 
TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 TCGA-77-8008 TCGA-77-8009 
      106.95         0.16        46.78        15.75        86.76        53.95 
TCGA-77-8128 TCGA-77-8130 TCGA-77-8133 TCGA-77-8138 TCGA-77-8143 TCGA-77-8145 
       37.81        82.92        53.92        17.69        26.40         6.97 
TCGA-77-8148 TCGA-77-8150 TCGA-77-8153 TCGA-77-8154 TCGA-77-8156 TCGA-77-A5FZ 
        9.63        54.41        55.33        35.90         0.33       126.18 
TCGA-77-A5G3 TCGA-77-A5GB TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 TCGA-85-7698 
      117.57        30.81         0.79         1.12         0.59         1.61 
TCGA-85-7699 TCGA-85-7843 TCGA-85-7844 TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 
        0.03         1.15         1.25         0.85         1.97         0.53 
TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 TCGA-85-8276 TCGA-85-8277 TCGA-85-8288 
       16.77        14.07         1.18         0.43         0.36         1.78 
TCGA-85-8350 TCGA-85-8351 TCGA-85-8352 TCGA-85-8353 TCGA-85-8354 TCGA-85-8479 
        1.97         1.81         2.20         1.78         2.01         0.72 
TCGA-85-8580 TCGA-85-8582 TCGA-85-8664 TCGA-85-8666 TCGA-85-A4CL TCGA-85-A50M 
       14.60        13.91         0.10        15.58         0.46         0.62 
TCGA-85-A513 TCGA-90-6837 TCGA-90-7769 TCGA-90-7964 TCGA-90-A4EE TCGA-92-7340 
        0.79        24.89        11.77        14.07        10.88         2.70 
TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 TCGA-96-7544 TCGA-96-7545 
        4.01         5.26         2.27         2.86        39.88        44.15 
TCGA-96-8169 TCGA-96-A4JL TCGA-98-7454 TCGA-98-8021 TCGA-98-8022 TCGA-J1-A4AH 
        6.18         6.02         8.42        13.58         7.33         7.30 
TCGA-L3-A4E7 TCGA-L3-A524 TCGA-LA-A446 TCGA-NC-A5HI 
        1.15        14.76         1.18        37.32 

  18P LOSS MUTATED 18P LOSS WILD-TYPE 
              0.10               0.03 
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
            122.43             173.79 
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
             10.82              14.68 
[1] "0.1 - 122.4 (10.8)" "0.0 - 173.8 (14.7)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
  "18P LOSS MUTATED"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
  "18P LOSS MUTATED"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-22-A5C4         TCGA-33-4532         TCGA-33-4533 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-33-4538         TCGA-33-4547         TCGA-33-4566 
  "18P LOSS MUTATED"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-33-4582         TCGA-33-4583         TCGA-33-4586 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-33-4587         TCGA-33-4589         TCGA-33-6737 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-33-6738         TCGA-34-2596         TCGA-34-2600 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-34-2604         TCGA-34-2605         TCGA-34-2608 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-34-2609         TCGA-34-5231         TCGA-34-5232 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-34-5234         TCGA-34-5236         TCGA-34-5239 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-34-5240         TCGA-34-5241         TCGA-34-5927 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-34-5928         TCGA-34-5929         TCGA-34-7107 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-3792 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4132 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-37-4133         TCGA-37-4135         TCGA-37-4141 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-37-5819         TCGA-39-5011         TCGA-39-5016 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-39-5019         TCGA-39-5021         TCGA-39-5022 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-39-5024         TCGA-39-5027         TCGA-39-5028 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-39-5029         TCGA-39-5030         TCGA-39-5031 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-39-5034         TCGA-39-5035         TCGA-39-5036 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-39-5037         TCGA-39-5039         TCGA-39-5040 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-43-8118 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-43-A474         TCGA-43-A475         TCGA-43-A56V 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-46-3768         TCGA-46-6025         TCGA-46-6026 
  "18P LOSS MUTATED"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-51-4079         TCGA-51-4080         TCGA-51-4081 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-52-7622         TCGA-52-7809         TCGA-52-7810 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-52-7811         TCGA-52-7812         TCGA-56-1622 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-56-5897         TCGA-56-5898         TCGA-56-6545 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-56-6546         TCGA-56-7221         TCGA-56-7222 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-56-7223         TCGA-56-7579         TCGA-56-7580 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-56-7582         TCGA-56-7730         TCGA-56-7822 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-56-8503         TCGA-56-8504         TCGA-56-8622 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-56-8624         TCGA-56-8625         TCGA-56-8626 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-56-8628         TCGA-56-8629         TCGA-56-A49D 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-56-A4BX         TCGA-56-A4BY         TCGA-56-A4ZJ 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-56-A4ZK         TCGA-56-A5DS         TCGA-58-8386 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-58-8387         TCGA-58-8388         TCGA-58-8390 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-58-8391         TCGA-58-8392         TCGA-58-8393 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-58-A46J         TCGA-58-A46K         TCGA-58-A46L 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-58-A46M         TCGA-58-A46N         TCGA-60-2695 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
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  "18P LOSS MUTATED" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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  "18P LOSS MUTATED" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
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  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
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  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
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  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-96-8169         TCGA-96-8170         TCGA-96-A4JK 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-96-A4JL         TCGA-98-7454         TCGA-98-8020 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-LA-A446         TCGA-MF-A522         TCGA-NC-A5HE 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
[1] "hr=" "1"  
D72V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  18P LOSS MUTATED         1       14       37        1        10        22
  18P LOSS WILD-TYPE       0       54       96        0        40        49
                    vv
clus                 STAGE IIIA STAGE IIIB STAGE IV
  18P LOSS MUTATED           15          3        3
  18P LOSS WILD-TYPE         39         17        2
D72V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  18P LOSS MUTATED    18  74  11   5
  18P LOSS WILD-TYPE  75 176  33  14
D72V4, multiclass
    clus
vv   18P LOSS MUTATED 18P LOSS WILD-TYPE
  T1               18                 75
  T2               74                176
  T3               11                 33
  T4                5                 14
                    vv
clus                  N0  N1  N2  N3
  18P LOSS MUTATED    68  28   9   1
  18P LOSS WILD-TYPE 185  81  25   4
D72V5, multiclass
    clus
vv   18P LOSS MUTATED 18P LOSS WILD-TYPE
  N0               68                185
  N1               28                 81
  N2                9                 25
  N3                1                  4
                    vv
clus                  M0  M1  MX
  18P LOSS MUTATED    86   3  16
  18P LOSS WILD-TYPE 262   2  31
D72V6, multiclass
    clus
vv   18P LOSS MUTATED 18P LOSS WILD-TYPE
  M0               86                262
  M1                3                  2
  MX               16                 31
D72V7, binary
                    cls
clus                   0   1
  18P LOSS MUTATED    24  84
  18P LOSS WILD-TYPE  77 221
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18P LOSS MUTATED     24   84
  18P LOSS WILD-TYPE   77  221
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  FEMALE               24                 77
  MALE                 84                221
D72V8, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  18P LOSS MUTATED                                       2
  18P LOSS WILD-TYPE                                    10
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  18P LOSS MUTATED                                        2
  18P LOSS WILD-TYPE                                      4
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  18P LOSS MUTATED                                         0
  18P LOSS WILD-TYPE                                       1
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  18P LOSS MUTATED                                                           104
  18P LOSS WILD-TYPE                                                         283
D72V9, multiclass
                                                             clus
vv                                                            18P LOSS MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      2
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                     2
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                    0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              104
                                                             clus
vv                                                            18P LOSS WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       10
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                       4
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                      1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                283
D72V10, binary
                    cls
clus                   0   1
  18P LOSS MUTATED     1 107
  18P LOSS WILD-TYPE  11 287
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18P LOSS MUTATED      1  107
  18P LOSS WILD-TYPE   11  287
     clus
vv    18P LOSS MUTATED 18P LOSS WILD-TYPE
  NO                 1                 11
  YES              107                287
D72V11, continuous
D72V12, continuous
                    vv
clus                  R0  R1  R2  RX
  18P LOSS MUTATED    85   2   0   4
  18P LOSS WILD-TYPE 245   6   4  14
D72V13, multiclass
    clus
vv   18P LOSS MUTATED 18P LOSS WILD-TYPE
  R0               85                245
  R1                2                  6
  R2                0                  4
  RX                4                 14

Clustering(73) Variable = 18Q LOSS MUTATION ANALYSIS
D73V1, survival
                    sevent
clus2                  0   1
  18Q LOSS MUTATED    91  41
  18Q LOSS WILD-TYPE 148  97
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
               132                245 
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
                41                 97 
$`18Q LOSS MUTATED`
TCGA-18-3412 TCGA-18-3414 TCGA-18-3416 TCGA-18-3417 TCGA-18-3421 TCGA-21-1070 
       11.34        13.02        28.34        24.92        43.76       119.54 
TCGA-21-1071 TCGA-21-1079 TCGA-21-1080 TCGA-21-5782 TCGA-21-5786 TCGA-21-5787 
       46.88        31.69       122.43        31.63        33.93        10.82 
TCGA-21-A5DI TCGA-22-1000 TCGA-22-1016 TCGA-22-1017 TCGA-22-4593 TCGA-22-4599 
       32.19        14.93        27.02        48.82        35.08        38.17 
TCGA-22-4601 TCGA-22-5473 TCGA-22-A5C4 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 
       34.75        63.52         0.95       114.05        97.94        43.10 
TCGA-33-4583 TCGA-33-4589 TCGA-33-6737 TCGA-33-6738 TCGA-34-2608 TCGA-34-5231 
      141.34        10.98        19.76        26.99        32.84        50.24 
TCGA-34-5241 TCGA-37-3789 TCGA-37-3792 TCGA-37-4130 TCGA-37-4133 TCGA-39-5011 
       14.07         0.43         0.39         8.09         7.82        47.80 
TCGA-39-5027 TCGA-39-5028 TCGA-39-5036 TCGA-43-2576 TCGA-43-3394 TCGA-43-5668 
       60.76         1.71        35.64        40.21        27.02        11.47 
TCGA-43-6647 TCGA-43-7656 TCGA-46-3768 TCGA-46-6025 TCGA-51-4079 TCGA-52-7810 
       24.89         6.97         9.96        10.65         0.39        30.31 
TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-7221 TCGA-56-7222 
       27.45        28.93         0.10         2.04         0.99         0.43 
TCGA-56-7223 TCGA-56-8503 TCGA-56-8624 TCGA-56-8626 TCGA-56-8629 TCGA-56-A4BY 
        0.99         1.35         1.18         0.56         1.12         0.99 
TCGA-56-A4ZK TCGA-58-8386 TCGA-58-A46K TCGA-58-A46M TCGA-60-2696 TCGA-60-2698 
        0.13         0.03        34.36        23.24         3.58        10.22 
TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 TCGA-60-2714 TCGA-60-2720 TCGA-60-2726 
       92.71        21.70        80.42        50.33         3.16        11.77 
TCGA-66-2734 TCGA-66-2744 TCGA-66-2753 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 
       43.10         0.99         1.02         0.99         2.01         1.02 
TCGA-66-2768 TCGA-66-2773 TCGA-66-2780 TCGA-66-2781 TCGA-66-2785 TCGA-66-2786 
        2.01         3.02        12.03         3.98         1.94        25.97 
TCGA-66-2790 TCGA-66-2791 TCGA-66-2792 TCGA-66-2795 TCGA-68-7757 TCGA-68-8250 
       22.98         5.03        30.02         4.01         6.94         8.02 
TCGA-77-6842 TCGA-77-7337 TCGA-77-8130 TCGA-77-8131 TCGA-77-8136 TCGA-77-8138 
       29.56       106.95        82.92        12.59        39.09        17.69 
TCGA-77-8139 TCGA-77-8140 TCGA-77-8144 TCGA-77-8148 TCGA-77-A5GH TCGA-85-6560 
      104.09        11.54        27.39         9.63        23.44         0.36 
TCGA-85-7697 TCGA-85-7698 TCGA-85-7844 TCGA-85-8049 TCGA-85-8072 TCGA-85-8276 
        0.33         1.61         1.25         1.97         1.18         0.43 
TCGA-85-8287 TCGA-85-8352 TCGA-85-8353 TCGA-85-8355 TCGA-85-8481 TCGA-85-A53L 
        1.45         2.20         1.78         0.66         0.66         0.43 
TCGA-90-7766 TCGA-90-7767 TCGA-90-7769 TCGA-90-A4ED TCGA-92-7341 TCGA-92-8063 
        9.50         2.93        11.77         8.02         3.48         4.01 
TCGA-94-7033 TCGA-94-7557 TCGA-94-7943 TCGA-96-8169 TCGA-96-8170 TCGA-96-A4JK 
        2.86         0.16        11.70         6.18         6.90         8.98 
TCGA-98-8020 TCGA-98-8023 TCGA-L3-A524 TCGA-NC-A5HE TCGA-NC-A5HG TCGA-NC-A5HI 
        2.73        10.13        14.76        56.61        50.86        37.32 

$`18Q LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3415 TCGA-18-3419 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 
       59.51         1.61         6.15         2.79        90.51         3.02 
TCGA-18-5595 TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 
       27.16        99.16        70.13        60.89        34.78        15.55 
TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 TCGA-21-5783 TCGA-21-5784 TCGA-22-0940 
        9.30       119.80         8.78        88.08        41.69        19.99 
TCGA-22-0944 TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-4591 
        7.33         4.31        64.21         1.74        14.10        20.45 
TCGA-22-4594 TCGA-22-4595 TCGA-22-4596 TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 
       48.33        24.13         0.56        13.12        32.02        19.30 
TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5474 TCGA-22-5477 
        9.53        11.77        31.73        64.90        14.60        44.22 
TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 TCGA-22-5482 TCGA-22-5483 
        0.79        54.28        71.34        79.20        11.74        18.84 
TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4566 
       30.08        62.86        56.32        16.60         7.63       173.79 
TCGA-33-4582 TCGA-33-4586 TCGA-33-4587 TCGA-34-2596 TCGA-34-2600 TCGA-34-2604 
      103.53        14.07        54.44         2.63        61.61        31.50 
TCGA-34-2605 TCGA-34-2609 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 
       28.96        31.23        67.79        56.38         9.04        23.24 
TCGA-34-5240 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 
       12.00        30.94        18.12         4.96         1.08         3.95 
TCGA-37-4129 TCGA-37-4132 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 
        6.54         7.46         6.81         0.39         3.39        74.07 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5029 TCGA-39-5030 
       44.71        68.58        55.17        70.03        24.33         1.94 
TCGA-39-5031 TCGA-39-5034 TCGA-39-5035 TCGA-39-5037 TCGA-39-5039 TCGA-39-5040 
       27.35        36.39        15.58        35.70        17.88        17.06 
TCGA-43-2578 TCGA-43-2581 TCGA-43-3920 TCGA-43-5670 TCGA-43-6143 TCGA-43-6770 
       22.49        38.66        33.07        18.05        12.36        10.19 
TCGA-43-6771 TCGA-43-6773 TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 
        5.42         3.78         1.58        66.51         6.64         6.35 
TCGA-43-8118 TCGA-43-A474 TCGA-43-A475 TCGA-43-A56V TCGA-46-6026 TCGA-51-4080 
        2.93        11.61         9.73         5.06        13.87         0.39 
TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 TCGA-52-7811 TCGA-56-5898 TCGA-56-6546 
       29.95        17.79         5.42         8.75        18.25         1.02 
TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 TCGA-56-7730 TCGA-56-7822 TCGA-56-8504 
        1.45         1.32         0.85         0.20         0.03         5.82 
TCGA-56-8622 TCGA-56-8625 TCGA-56-8628 TCGA-56-A49D TCGA-56-A4BX TCGA-56-A4ZJ 
        1.78         2.07         0.53         0.99         1.51         1.02 
TCGA-56-A5DS TCGA-58-8387 TCGA-58-8388 TCGA-58-8390 TCGA-58-8391 TCGA-58-8392 
        0.26        13.25        12.43        29.95        71.24        16.47 
TCGA-58-8393 TCGA-58-A46J TCGA-58-A46L TCGA-58-A46N TCGA-60-2695 TCGA-60-2697 
       34.78        64.87        36.59        17.72        21.07        12.23 
TCGA-60-2703 TCGA-60-2704 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 
       96.82        37.94        49.48        66.51        41.39         9.01 
TCGA-60-2713 TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 TCGA-60-2721 TCGA-60-2722 
       56.91        35.34        48.49        42.61        32.28        29.85 
TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-66-2727 TCGA-66-2737 TCGA-66-2742 
       35.90        23.57        26.79        16.96         2.01        21.07 
TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 
        2.01         0.92         0.99         0.99        20.98        25.02 
TCGA-66-2767 TCGA-66-2769 TCGA-66-2770 TCGA-66-2771 TCGA-66-2777 TCGA-66-2778 
        2.01         7.07        23.01        19.00         2.01        19.00 
TCGA-66-2782 TCGA-66-2783 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2793 
       12.00        24.95        40.01        22.98         4.04        10.06 
TCGA-66-2794 TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 TCGA-68-8251 TCGA-77-6843 
       54.08        49.05         2.73         6.64         3.12        73.08 
TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 
       75.09        23.28        11.18        89.95        20.78         0.49 
TCGA-77-7142 TCGA-77-7335 TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 TCGA-77-8007 
       42.25        70.09         0.16        46.78        15.75         6.51 
TCGA-77-8008 TCGA-77-8009 TCGA-77-8128 TCGA-77-8133 TCGA-77-8143 TCGA-77-8145 
       86.76        53.95        37.81        53.92        26.40         6.97 
TCGA-77-8150 TCGA-77-8153 TCGA-77-8154 TCGA-77-8156 TCGA-77-A5FZ TCGA-77-A5G3 
       54.41        55.33        35.90         0.33       126.18       117.57 
TCGA-77-A5GB TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 TCGA-85-7699 TCGA-85-7843 
       30.81         0.79         1.12         0.59         0.03         1.15 
TCGA-85-7950 TCGA-85-8048 TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 TCGA-85-8277 
        1.97         0.85         0.53        16.77        14.07         0.36 
TCGA-85-8288 TCGA-85-8350 TCGA-85-8351 TCGA-85-8354 TCGA-85-8479 TCGA-85-8580 
        1.78         1.97         1.81         2.01         0.72        14.60 
TCGA-85-8582 TCGA-85-8664 TCGA-85-8666 TCGA-85-A4CL TCGA-85-A4QR TCGA-85-A50M 
       13.91         0.10        15.58         0.46         0.82         0.62 
TCGA-85-A513 TCGA-90-6837 TCGA-90-7964 TCGA-90-A4EE TCGA-92-7340 TCGA-92-8064 
        0.79        24.89        14.07        10.88         2.70         5.26 
TCGA-92-8065 TCGA-96-7544 TCGA-96-7545 TCGA-96-A4JL TCGA-98-7454 TCGA-98-8021 
        2.27        39.88        44.15         6.02         8.42        13.58 
TCGA-98-8022 TCGA-J1-A4AH TCGA-L3-A4E7 TCGA-LA-A446 TCGA-MF-A522 
        7.33         7.30         1.15         1.18         3.02 

  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
              0.03               0.03 
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
            141.34             173.79 
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
             11.16              15.55 
[1] "0.0 - 141.3 (11.2)" "0.0 - 173.8 (15.6)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
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"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-58-8391         TCGA-58-8392         TCGA-58-8393 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-58-A46J         TCGA-58-A46K         TCGA-58-A46L 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-58-A46M         TCGA-58-A46N         TCGA-60-2695 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-60-2696         TCGA-60-2697         TCGA-60-2698 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-60-2703         TCGA-60-2704         TCGA-60-2706 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2756 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-66-2770         TCGA-66-2771         TCGA-66-2773 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-66-2785         TCGA-66-2786         TCGA-66-2787 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-68-7755         TCGA-68-7756         TCGA-68-7757 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-68-8250         TCGA-68-8251         TCGA-77-6842 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-77-6843         TCGA-77-6844         TCGA-77-6845 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-77-7138         TCGA-77-7139         TCGA-77-7140 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-77-7141         TCGA-77-7142         TCGA-77-7335 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-77-7337         TCGA-77-7338         TCGA-77-7463 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-77-7465         TCGA-77-8007         TCGA-77-8008 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-77-8009         TCGA-77-8128         TCGA-77-8130 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-77-8131         TCGA-77-8133         TCGA-77-8136 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-77-8138         TCGA-77-8139         TCGA-77-8140 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-77-8143         TCGA-77-8144         TCGA-77-8145 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-77-8148         TCGA-77-8150         TCGA-77-8153 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-77-8154         TCGA-77-8156         TCGA-77-A5FZ 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-77-A5G3         TCGA-77-A5GB         TCGA-77-A5GH 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-96-8169         TCGA-96-8170         TCGA-96-A4JK 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-96-A4JL         TCGA-98-7454         TCGA-98-8020 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-LA-A446         TCGA-MF-A522         TCGA-NC-A5HE 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
[1] "hr=" "1.1"
D73V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  18Q LOSS MUTATED         1       18       47        0        18        30
  18Q LOSS WILD-TYPE       0       50       86        1        32        41
                    vv
clus                 STAGE IIIA STAGE IIIB STAGE IV
  18Q LOSS MUTATED           21          3        3
  18Q LOSS WILD-TYPE         33         17        2
D73V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  18Q LOSS MUTATED    26  93  19   5
  18Q LOSS WILD-TYPE  67 157  25  14
D73V4, multiclass
    clus
vv   18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  T1               26                 67
  T2               93                157
  T3               19                 25
  T4                5                 14
                    vv
clus                  N0  N1  N2  N3
  18Q LOSS MUTATED    86  42  11   1
  18Q LOSS WILD-TYPE 167  67  23   4
D73V5, multiclass
    clus
vv   18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  N0               86                167
  N1               42                 67
  N2               11                 23
  N3                1                  4
                    vv
clus                  M0  M1  MX
  18Q LOSS MUTATED   116   3  20
  18Q LOSS WILD-TYPE 232   2  27
D73V6, multiclass
    clus
vv   18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  M0              116                232
  M1                3                  2
  MX               20                 27
D73V7, binary
                    cls
clus                   0   1
  18Q LOSS MUTATED    31 112
  18Q LOSS WILD-TYPE  70 193
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18Q LOSS MUTATED     31  112
  18Q LOSS WILD-TYPE   70  193
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  FEMALE               31                 70
  MALE                112                193
D73V8, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  18Q LOSS MUTATED                                       2
  18Q LOSS WILD-TYPE                                    10
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  18Q LOSS MUTATED                                        3
  18Q LOSS WILD-TYPE                                      3
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  18Q LOSS MUTATED                                         0
  18Q LOSS WILD-TYPE                                       1
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  18Q LOSS MUTATED                                                           138
  18Q LOSS WILD-TYPE                                                         249
D73V9, multiclass
                                                             clus
vv                                                            18Q LOSS MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      2
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                     3
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                    0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              138
                                                             clus
vv                                                            18Q LOSS WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       10
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                       3
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                      1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                249
D73V10, binary
                    cls
clus                   0   1
  18Q LOSS MUTATED     3 140
  18Q LOSS WILD-TYPE   9 254
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18Q LOSS MUTATED      3  140
  18Q LOSS WILD-TYPE    9  254
     clus
vv    18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  NO                 3                  9
  YES              140                254
D73V11, continuous
D73V12, continuous
                    vv
clus                  R0  R1  R2  RX
  18Q LOSS MUTATED   115   2   0   8
  18Q LOSS WILD-TYPE 215   6   4  10
D73V13, multiclass
    clus
vv   18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  R0              115                215
  R1                2                  6
  R2                0                  4
  RX                8                 10

Clustering(74) Variable = 19P LOSS MUTATION ANALYSIS
D74V1, survival
                    sevent
clus2                  0   1
  19P LOSS MUTATED    81  45
  19P LOSS WILD-TYPE 158  93
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
               126                251 
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
                45                 93 
$`19P LOSS MUTATED`
TCGA-18-3409 TCGA-18-3412 TCGA-18-3417 TCGA-18-5592 TCGA-21-1070 TCGA-21-1071 
       79.46        11.34        24.92         3.02       119.54        46.88 
TCGA-21-1077 TCGA-21-1081 TCGA-21-1083 TCGA-21-5783 TCGA-21-5786 TCGA-21-A5DI 
       34.78         9.30         8.78        88.08        33.93        32.19 
TCGA-22-0940 TCGA-22-1002 TCGA-22-1005 TCGA-22-4594 TCGA-22-4601 TCGA-22-4605 
       19.99         4.31        64.21        48.33        34.75        32.02 
TCGA-22-4607 TCGA-22-5478 TCGA-22-5485 TCGA-22-5492 TCGA-22-A5C4 TCGA-33-4532 
       19.30         0.79        30.08        16.60         0.95         7.63 
TCGA-33-4582 TCGA-33-4587 TCGA-33-6738 TCGA-34-2604 TCGA-34-2608 TCGA-34-5241 
      103.53        54.44        26.99        31.50        32.84        14.07 
TCGA-34-5928 TCGA-34-5929 TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 
       18.12         4.96         0.39         6.54         8.09         7.46 
TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5011 TCGA-39-5029 
        7.82         6.81         0.39         3.39        47.80        24.33 
TCGA-39-5036 TCGA-43-2576 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 
       35.64        40.21        22.49        27.02        33.07        11.47 
TCGA-43-5670 TCGA-43-6771 TCGA-43-7656 TCGA-43-A474 TCGA-43-A56V TCGA-46-6025 
       18.05         5.42         6.97        11.61         5.06        10.65 
TCGA-46-6026 TCGA-51-4081 TCGA-52-7810 TCGA-52-7811 TCGA-56-1622 TCGA-56-5897 
       13.87        29.95        30.31         8.75        28.93         0.10 
TCGA-56-5898 TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 TCGA-56-7730 
       18.25         0.99         0.43         0.99         1.45         0.20 
TCGA-56-7822 TCGA-56-8624 TCGA-56-8629 TCGA-56-A49D TCGA-56-A4BX TCGA-56-A4ZJ 
        0.03         1.18         1.12         0.99         1.51         1.02 
TCGA-58-8386 TCGA-58-8388 TCGA-58-8390 TCGA-58-A46L TCGA-60-2696 TCGA-60-2706 
        0.03        12.43        29.95        36.59         3.58        92.71 
TCGA-60-2707 TCGA-60-2711 TCGA-60-2714 TCGA-60-2722 TCGA-60-2723 TCGA-66-2727 
       21.70        41.39        50.33        29.85        35.90        16.96 
TCGA-66-2753 TCGA-66-2756 TCGA-66-2759 TCGA-66-2769 TCGA-66-2780 TCGA-66-2781 
        1.02         0.99        25.02         7.07        12.03         3.98 
TCGA-66-2782 TCGA-66-2786 TCGA-66-2788 TCGA-66-2793 TCGA-68-7755 TCGA-68-7756 
       12.00        25.97        22.98        10.06         2.73         6.64 
TCGA-68-8250 TCGA-77-6845 TCGA-77-7138 TCGA-77-7338 TCGA-77-7463 TCGA-77-8136 
        8.02        23.28        11.18         0.16        46.78        39.09 
TCGA-77-8138 TCGA-77-8143 TCGA-77-8144 TCGA-77-8145 TCGA-77-8156 TCGA-85-6560 
       17.69        26.40        27.39         6.97         0.33         0.36 
TCGA-85-7697 TCGA-85-8070 TCGA-85-8072 TCGA-85-8276 TCGA-85-8287 TCGA-85-8351 
        0.33        16.77         1.18         0.43         1.45         1.81 
TCGA-85-A4CL TCGA-85-A53L TCGA-90-7964 TCGA-90-A4ED TCGA-92-7341 TCGA-92-8063 
        0.46         0.43        14.07         8.02         3.48         4.01 
TCGA-94-7557 TCGA-94-7943 TCGA-96-8169 TCGA-L3-A524 TCGA-NC-A5HG TCGA-NC-A5HI 
        0.16        11.70         6.18        14.76        50.86        37.32 

$`19P LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3414 
       12.16         4.47        81.07         4.80        46.52        13.02 
TCGA-18-3415 TCGA-18-3416 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 
       59.51        28.34         1.61        43.76         6.15         2.79 
TCGA-18-4721 TCGA-18-5595 TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1078 
       90.51        27.16        99.16        70.13        60.89        15.55 
TCGA-21-1079 TCGA-21-1080 TCGA-21-1082 TCGA-21-5782 TCGA-21-5784 TCGA-21-5787 
       31.69       122.43       119.80        31.63        41.69        10.82 
TCGA-22-0944 TCGA-22-1000 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 
        7.33        14.93         1.74        14.10        27.02        48.82 
TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 TCGA-22-4604 
       20.45        35.08        24.13         0.56        38.17        13.12 
TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 
        9.53        11.77        31.73        64.90        63.52        14.60 
TCGA-22-5477 TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 TCGA-22-5482 TCGA-22-5483 
       44.22        54.28        71.34        79.20        11.74        18.84 
TCGA-22-5489 TCGA-22-5491 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 
       62.86        56.32       114.05        97.94        43.10       173.79 
TCGA-33-4583 TCGA-33-4586 TCGA-33-4589 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 
      141.34        14.07        10.98        19.76         2.63        61.61 
TCGA-34-2605 TCGA-34-2609 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 
       28.96        31.23        50.24        67.79        56.38         9.04 
TCGA-34-5239 TCGA-34-5240 TCGA-34-5927 TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 
       23.24        12.00        30.94         1.08         3.95         0.43 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 
       74.07        44.71        68.58        55.17        70.03        60.76 
TCGA-39-5028 TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 TCGA-39-5035 TCGA-39-5037 
        1.71         1.94        27.35        36.39        15.58        35.70 
TCGA-39-5039 TCGA-39-5040 TCGA-43-2581 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 
       17.88        17.06        38.66        12.36        24.89        10.19 
TCGA-43-6773 TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 TCGA-43-8118 
        3.78         1.58        66.51         6.64         6.35         2.93 
TCGA-43-A475 TCGA-46-3768 TCGA-51-4079 TCGA-51-4080 TCGA-52-7622 TCGA-52-7809 
        9.73         9.96         0.39         0.39        17.79         5.42 
TCGA-52-7812 TCGA-56-6545 TCGA-56-6546 TCGA-56-7580 TCGA-56-7582 TCGA-56-8503 
       27.45         2.04         1.02         1.32         0.85         1.35 
TCGA-56-8504 TCGA-56-8622 TCGA-56-8625 TCGA-56-8626 TCGA-56-8628 TCGA-56-A4BY 
        5.82         1.78         2.07         0.56         0.53         0.99 
TCGA-56-A4ZK TCGA-56-A5DS TCGA-58-8387 TCGA-58-8391 TCGA-58-8392 TCGA-58-8393 
        0.13         0.26        13.25        71.24        16.47        34.78 
TCGA-58-A46J TCGA-58-A46K TCGA-58-A46M TCGA-58-A46N TCGA-60-2695 TCGA-60-2697 
       64.87        34.36        23.24        17.72        21.07        12.23 
TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 
       10.22        96.82        37.94        80.42        49.48        66.51 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 
        9.01        56.91        35.34        48.49        42.61         3.16 
TCGA-60-2721 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2734 TCGA-66-2737 
       32.28        23.57        26.79        11.77        43.10         2.01 
TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2757 TCGA-66-2758 
       21.07         0.99         2.01         0.92         0.99        20.98 
TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 
        0.99         2.01         1.02         2.01         2.01        23.01 
TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2783 TCGA-66-2785 
       19.00         3.02         2.01        19.00        24.95         1.94 
TCGA-66-2787 TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 TCGA-66-2792 TCGA-66-2794 
       40.01         4.04        22.98         5.03        30.02        54.08 
TCGA-66-2795 TCGA-66-2800 TCGA-68-7757 TCGA-68-8251 TCGA-77-6842 TCGA-77-6843 
        4.01        49.05         6.94         3.12        29.56        73.08 
TCGA-77-6844 TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 
       75.09        89.95        20.78         0.49        42.25        70.09 
TCGA-77-7337 TCGA-77-7465 TCGA-77-8007 TCGA-77-8008 TCGA-77-8009 TCGA-77-8128 
      106.95        15.75         6.51        86.76        53.95        37.81 
TCGA-77-8130 TCGA-77-8131 TCGA-77-8133 TCGA-77-8139 TCGA-77-8140 TCGA-77-8148 
       82.92        12.59        53.92       104.09        11.54         9.63 
TCGA-77-8150 TCGA-77-8153 TCGA-77-8154 TCGA-77-A5FZ TCGA-77-A5G3 TCGA-77-A5GB 
       54.41        55.33        35.90       126.18       117.57        30.81 
TCGA-77-A5GH TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 TCGA-85-7698 TCGA-85-7699 
       23.44         0.79         1.12         0.59         1.61         0.03 
TCGA-85-7843 TCGA-85-7844 TCGA-85-7950 TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 
        1.15         1.25         1.97         0.85         1.97         0.53 
TCGA-85-8071 TCGA-85-8277 TCGA-85-8288 TCGA-85-8350 TCGA-85-8352 TCGA-85-8353 
       14.07         0.36         1.78         1.97         2.20         1.78 
TCGA-85-8354 TCGA-85-8355 TCGA-85-8479 TCGA-85-8481 TCGA-85-8580 TCGA-85-8582 
        2.01         0.66         0.72         0.66        14.60        13.91 
TCGA-85-8664 TCGA-85-8666 TCGA-85-A4QR TCGA-85-A50M TCGA-85-A513 TCGA-90-6837 
        0.10        15.58         0.82         0.62         0.79        24.89 
TCGA-90-7766 TCGA-90-7767 TCGA-90-7769 TCGA-90-A4EE TCGA-92-7340 TCGA-92-8064 
        9.50         2.93        11.77        10.88         2.70         5.26 
TCGA-92-8065 TCGA-94-7033 TCGA-96-7544 TCGA-96-7545 TCGA-96-8170 TCGA-96-A4JK 
        2.27         2.86        39.88        44.15         6.90         8.98 
TCGA-96-A4JL TCGA-98-7454 TCGA-98-8020 TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 
        6.02         8.42         2.73        13.58         7.33        10.13 
TCGA-J1-A4AH TCGA-L3-A4E7 TCGA-LA-A446 TCGA-MF-A522 TCGA-NC-A5HE 
        7.30         1.15         1.18         3.02        56.61 

  19P LOSS MUTATED 19P LOSS WILD-TYPE 
              0.03               0.03 
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
            119.54             173.79 
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
            11.655             14.100 
[1] "0.0 - 119.5 (11.7)" "0.0 - 173.8 (14.1)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-22-A5C4         TCGA-33-4532         TCGA-33-4533 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-33-4538         TCGA-33-4547         TCGA-33-4566 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-33-4582         TCGA-33-4583         TCGA-33-4586 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-33-4587         TCGA-33-4589         TCGA-33-6737 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-33-6738         TCGA-34-2596         TCGA-34-2600 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-34-2604         TCGA-34-2605         TCGA-34-2608 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-34-2609         TCGA-34-5231         TCGA-34-5232 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-34-5234         TCGA-34-5236         TCGA-34-5239 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-34-5240         TCGA-34-5241         TCGA-34-5927 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-34-5928         TCGA-34-5929         TCGA-34-7107 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-3792 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4132 
  "19P LOSS MUTATED"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-37-4133         TCGA-37-4135         TCGA-37-4141 
  "19P LOSS MUTATED"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-37-5819         TCGA-39-5011         TCGA-39-5016 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-39-5019         TCGA-39-5021         TCGA-39-5022 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-39-5024         TCGA-39-5027         TCGA-39-5028 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-39-5029         TCGA-39-5030         TCGA-39-5031 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-39-5034         TCGA-39-5035         TCGA-39-5036 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-39-5037         TCGA-39-5039         TCGA-39-5040 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
  "19P LOSS MUTATED"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-43-8118 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-43-A474         TCGA-43-A475         TCGA-43-A56V 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-46-3768         TCGA-46-6025         TCGA-46-6026 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-51-4079         TCGA-51-4080         TCGA-51-4081 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-52-7622         TCGA-52-7809         TCGA-52-7810 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-52-7811         TCGA-52-7812         TCGA-56-1622 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-56-5897         TCGA-56-5898         TCGA-56-6545 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-56-6546         TCGA-56-7221         TCGA-56-7222 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-56-7223         TCGA-56-7579         TCGA-56-7580 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-56-7582         TCGA-56-7730         TCGA-56-7822 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-56-8503         TCGA-56-8504         TCGA-56-8622 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-56-8624         TCGA-56-8625         TCGA-56-8626 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-56-8628         TCGA-56-8629         TCGA-56-A49D 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-56-A4BX         TCGA-56-A4BY         TCGA-56-A4ZJ 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-56-A4ZK         TCGA-56-A5DS         TCGA-58-8386 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-58-8387         TCGA-58-8388         TCGA-58-8390 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-58-8391         TCGA-58-8392         TCGA-58-8393 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-58-A46J         TCGA-58-A46K         TCGA-58-A46L 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-58-A46M         TCGA-58-A46N         TCGA-60-2695 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-60-2696         TCGA-60-2697         TCGA-60-2698 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-60-2703         TCGA-60-2704         TCGA-60-2706 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2756 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-66-2770         TCGA-66-2771         TCGA-66-2773 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-66-2785         TCGA-66-2786         TCGA-66-2787 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-68-7755         TCGA-68-7756         TCGA-68-7757 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-68-8250         TCGA-68-8251         TCGA-77-6842 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-77-6843         TCGA-77-6844         TCGA-77-6845 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-77-7138         TCGA-77-7139         TCGA-77-7140 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-77-7141         TCGA-77-7142         TCGA-77-7335 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-77-7337         TCGA-77-7338         TCGA-77-7463 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-77-7465         TCGA-77-8007         TCGA-77-8008 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-77-8009         TCGA-77-8128         TCGA-77-8130 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-77-8131         TCGA-77-8133         TCGA-77-8136 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-77-8138         TCGA-77-8139         TCGA-77-8140 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-77-8143         TCGA-77-8144         TCGA-77-8145 
  "19P LOSS MUTATED"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-77-8148         TCGA-77-8150         TCGA-77-8153 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-77-8154         TCGA-77-8156         TCGA-77-A5FZ 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-77-A5G3         TCGA-77-A5GB         TCGA-77-A5GH 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-96-8169         TCGA-96-8170         TCGA-96-A4JK 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-96-A4JL         TCGA-98-7454         TCGA-98-8020 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
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  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
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  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
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  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
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  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
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  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-33-4582         TCGA-33-4583         TCGA-33-4586 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-33-4587         TCGA-33-4589         TCGA-33-6737 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-33-6738         TCGA-34-2596         TCGA-34-2600 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-34-2604         TCGA-34-2605         TCGA-34-2608 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-34-2609         TCGA-34-5231         TCGA-34-5232 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-34-5234         TCGA-34-5236         TCGA-34-5239 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-34-5240         TCGA-34-5241         TCGA-34-5927 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-34-5928         TCGA-34-5929         TCGA-34-7107 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4132 
  "19P LOSS MUTATED"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-37-4133         TCGA-37-4135         TCGA-37-4141 
  "19P LOSS MUTATED"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-37-5819         TCGA-39-5011         TCGA-39-5016 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-39-5029         TCGA-39-5030         TCGA-39-5031 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
  "19P LOSS MUTATED"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-43-8118 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-43-A474         TCGA-43-A475         TCGA-43-A56V 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
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  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-56-5897         TCGA-56-5898         TCGA-56-6545 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-56-8628         TCGA-56-8629         TCGA-56-A49D 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-56-A4BX         TCGA-56-A4BY         TCGA-56-A4ZJ 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-56-A4ZK         TCGA-56-A5DS         TCGA-58-8386 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-58-A46J         TCGA-58-A46K         TCGA-58-A46L 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
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  "19P LOSS MUTATED"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
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  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
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  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
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  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
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  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
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  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
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  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-22-A5C4         TCGA-33-4532         TCGA-33-4533 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-33-4538         TCGA-33-4547         TCGA-33-4566 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-33-4582         TCGA-33-4583         TCGA-33-4586 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-33-4587         TCGA-33-4589         TCGA-33-6737 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-33-6738         TCGA-34-2596         TCGA-34-2600 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-34-2604         TCGA-34-2605         TCGA-34-2608 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-34-2609         TCGA-34-5231         TCGA-34-5232 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-34-5234         TCGA-34-5236         TCGA-34-5239 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-34-5240         TCGA-34-5241         TCGA-34-5927 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-34-5928         TCGA-34-5929         TCGA-34-7107 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-3792 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4132 
  "19P LOSS MUTATED"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-37-4133         TCGA-37-4135         TCGA-37-4141 
  "19P LOSS MUTATED"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-37-5819         TCGA-39-5011         TCGA-39-5016 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-39-5019         TCGA-39-5021         TCGA-39-5022 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-39-5024         TCGA-39-5027         TCGA-39-5028 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-39-5029         TCGA-39-5030         TCGA-39-5031 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-39-5034         TCGA-39-5035         TCGA-39-5036 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-39-5037         TCGA-39-5039         TCGA-39-5040 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
  "19P LOSS MUTATED"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-43-8118 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-43-A474         TCGA-43-A475         TCGA-43-A56V 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-46-3768         TCGA-46-6025         TCGA-46-6026 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-51-4079         TCGA-51-4080         TCGA-51-4081 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-52-7622         TCGA-52-7809         TCGA-52-7810 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-52-7811         TCGA-52-7812         TCGA-56-1622 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-56-5897         TCGA-56-5898         TCGA-56-6545 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-56-6546         TCGA-56-7221         TCGA-56-7222 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-56-7223         TCGA-56-7579         TCGA-56-7580 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-56-7582         TCGA-56-7730         TCGA-56-7822 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-56-8503         TCGA-56-8504         TCGA-56-8622 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-56-8624         TCGA-56-8625         TCGA-56-8626 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-56-8628         TCGA-56-8629         TCGA-56-A49D 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-56-A4BX         TCGA-56-A4BY         TCGA-56-A4ZJ 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-56-A4ZK         TCGA-56-A5DS         TCGA-58-8386 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-58-8387         TCGA-58-8388         TCGA-58-8390 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-58-8391         TCGA-58-8392         TCGA-58-8393 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-58-A46J         TCGA-58-A46K         TCGA-58-A46L 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-58-A46M         TCGA-58-A46N         TCGA-60-2695 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-60-2696         TCGA-60-2697         TCGA-60-2698 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-60-2703         TCGA-60-2704         TCGA-60-2706 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2756 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-66-2770         TCGA-66-2771         TCGA-66-2773 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-66-2785         TCGA-66-2786         TCGA-66-2787 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-68-7755         TCGA-68-7756         TCGA-68-7757 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-68-8250         TCGA-68-8251         TCGA-77-6842 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-77-6843         TCGA-77-6844         TCGA-77-6845 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-77-7138         TCGA-77-7139         TCGA-77-7140 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-77-7141         TCGA-77-7142         TCGA-77-7335 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-77-7337         TCGA-77-7338         TCGA-77-7463 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-77-7465         TCGA-77-8007         TCGA-77-8008 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-77-8009         TCGA-77-8128         TCGA-77-8130 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-77-8131         TCGA-77-8133         TCGA-77-8136 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-77-8138         TCGA-77-8139         TCGA-77-8140 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-77-8143         TCGA-77-8144         TCGA-77-8145 
  "19P LOSS MUTATED"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-77-8148         TCGA-77-8150         TCGA-77-8153 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-77-8154         TCGA-77-8156         TCGA-77-A5FZ 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-77-A5G3         TCGA-77-A5GB         TCGA-77-A5GH 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-96-8169         TCGA-96-8170         TCGA-96-A4JK 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-96-A4JL         TCGA-98-7454         TCGA-98-8020 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-LA-A446         TCGA-MF-A522         TCGA-NC-A5HE 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" 
[1] "hr=" "1.3"
D74V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  19P LOSS MUTATED         1       22       43        0        20        19
  19P LOSS WILD-TYPE       0       46       90        1        30        52
                    vv
clus                 STAGE IIIA STAGE IIIB STAGE IV
  19P LOSS MUTATED           19          6        3
  19P LOSS WILD-TYPE         35         14        2
D74V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  19P LOSS MUTATED    33  81  14   8
  19P LOSS WILD-TYPE  60 169  30  11
D74V4, multiclass
    clus
vv   19P LOSS MUTATED 19P LOSS WILD-TYPE
  T1               33                 60
  T2               81                169
  T3               14                 30
  T4                8                 11
                    vv
clus                  N0  N1  N2  N3
  19P LOSS MUTATED    96  25  13   0
  19P LOSS WILD-TYPE 157  84  21   5
D74V5, multiclass
    clus
vv   19P LOSS MUTATED 19P LOSS WILD-TYPE
  N0               96                157
  N1               25                 84
  N2               13                 21
  N3                0                  5
                    vv
clus                  M0  M1  MX
  19P LOSS MUTATED   113   3  18
  19P LOSS WILD-TYPE 235   2  29
D74V6, multiclass
    clus
vv   19P LOSS MUTATED 19P LOSS WILD-TYPE
  M0              113                235
  M1                3                  2
  MX               18                 29
D74V7, binary
                    cls
clus                   0   1
  19P LOSS MUTATED    30 106
  19P LOSS WILD-TYPE  71 199
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19P LOSS MUTATED     30  106
  19P LOSS WILD-TYPE   71  199
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  FEMALE               30                 71
  MALE                106                199
D74V8, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  19P LOSS MUTATED                                       4
  19P LOSS WILD-TYPE                                     8
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  19P LOSS MUTATED                                        2
  19P LOSS WILD-TYPE                                      4
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  19P LOSS MUTATED                                         1
  19P LOSS WILD-TYPE                                       0
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  19P LOSS MUTATED                                                           129
  19P LOSS WILD-TYPE                                                         258
D74V9, multiclass
                                                             clus
vv                                                            19P LOSS MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      4
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                     2
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              129
                                                             clus
vv                                                            19P LOSS WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                        8
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                       4
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                      0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                258
D74V10, binary
                    cls
clus                   0   1
  19P LOSS MUTATED     6 130
  19P LOSS WILD-TYPE   6 264
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19P LOSS MUTATED      6  130
  19P LOSS WILD-TYPE    6  264
     clus
vv    19P LOSS MUTATED 19P LOSS WILD-TYPE
  NO                 6                  6
  YES              130                264
D74V11, continuous
D74V12, continuous
                    vv
clus                  R0  R1  R2  RX
  19P LOSS MUTATED   106   4   1   5
  19P LOSS WILD-TYPE 224   4   3  13
D74V13, multiclass
    clus
vv   19P LOSS MUTATED 19P LOSS WILD-TYPE
  R0              106                224
  R1                4                  4
  R2                1                  3
  RX                5                 13

Clustering(75) Variable = 19Q LOSS MUTATION ANALYSIS
D75V1, survival
                    sevent
clus2                  0   1
  19Q LOSS MUTATED    59  23
  19Q LOSS WILD-TYPE 180 115
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                82                295 
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                23                115 
$`19Q LOSS MUTATED`
TCGA-18-3409 TCGA-18-3412 TCGA-18-3416 TCGA-18-5592 TCGA-21-1077 TCGA-21-A5DI 
       79.46        11.34        28.34         3.02        34.78        32.19 
TCGA-22-0940 TCGA-22-0944 TCGA-22-1005 TCGA-22-4594 TCGA-22-4607 TCGA-22-4613 
       19.99         7.33        64.21        48.33        19.30        11.77 
TCGA-22-A5C4 TCGA-33-4532 TCGA-33-4586 TCGA-33-4587 TCGA-34-5929 TCGA-37-4129 
        0.95         7.63        14.07        54.44         4.96         6.54 
TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-39-5036 TCGA-43-3394 TCGA-43-6771 
        7.82         6.81         0.39        35.64        27.02         5.42 
TCGA-43-7656 TCGA-43-A474 TCGA-46-6025 TCGA-46-6026 TCGA-51-4081 TCGA-52-7810 
        6.97        11.61        10.65        13.87        29.95        30.31 
TCGA-52-7811 TCGA-56-1622 TCGA-56-5897 TCGA-56-5898 TCGA-56-7221 TCGA-56-7222 
        8.75        28.93         0.10        18.25         0.99         0.43 
TCGA-56-7579 TCGA-56-7822 TCGA-56-A4BX TCGA-58-8386 TCGA-58-A46L TCGA-60-2696 
        1.45         0.03         1.51         0.03        36.59         3.58 
TCGA-60-2706 TCGA-60-2707 TCGA-60-2711 TCGA-60-2714 TCGA-66-2727 TCGA-66-2753 
       92.71        21.70        41.39        50.33        16.96         1.02 
TCGA-66-2756 TCGA-66-2759 TCGA-66-2781 TCGA-66-2782 TCGA-66-2794 TCGA-68-7755 
        0.99        25.02         3.98        12.00        54.08         2.73 
TCGA-68-7756 TCGA-68-8250 TCGA-77-6845 TCGA-77-7338 TCGA-77-7463 TCGA-77-8136 
        6.64         8.02        23.28         0.16        46.78        39.09 
TCGA-77-8143 TCGA-77-8144 TCGA-77-8156 TCGA-85-6560 TCGA-85-6561 TCGA-85-7697 
       26.40        27.39         0.33         0.36         0.79         0.33 
TCGA-85-7843 TCGA-85-7950 TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 TCGA-85-8276 
        1.15         1.97        16.77        14.07         1.18         0.43 
TCGA-85-8287 TCGA-85-8351 TCGA-85-A4CL TCGA-90-A4ED TCGA-92-8063 TCGA-94-7943 
        1.45         1.81         0.46         8.02         4.01        11.70 
TCGA-L3-A524 TCGA-MF-A522 TCGA-NC-A5HG TCGA-NC-A5HI 
       14.76         3.02        50.86        37.32 

$`19Q LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3414 
       12.16         4.47        81.07         4.80        46.52        13.02 
TCGA-18-3415 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 
       59.51        24.92         1.61        43.76         6.15         2.79 
TCGA-18-4721 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 
       90.51        27.16       119.54        46.88        99.16        70.13 
TCGA-21-1076 TCGA-21-1078 TCGA-21-1079 TCGA-21-1080 TCGA-21-1081 TCGA-21-1082 
       60.89        15.55        31.69       122.43         9.30       119.80 
TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 
        8.78        31.63        88.08        41.69        33.93        10.82 
TCGA-22-1000 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 
       14.93         4.31         1.74        14.10        27.02        48.82 
TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 TCGA-22-4601 
       20.45        35.08        24.13         0.56        38.17        34.75 
TCGA-22-4604 TCGA-22-4605 TCGA-22-4609 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       13.12        32.02         9.53        31.73        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 
       14.60        44.22         0.79        54.28        71.34        79.20 
TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 
       11.74        18.84        30.08        62.86        56.32        16.60 
TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 
      114.05        97.94        43.10       173.79       103.53       141.34 
TCGA-33-4589 TCGA-33-6737 TCGA-33-6738 TCGA-34-2596 TCGA-34-2600 TCGA-34-2604 
       10.98        19.76        26.99         2.63        61.61        31.50 
TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 
       28.96        32.84        31.23        50.24        67.79        56.38 
TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 
        9.04        23.24        12.00        14.07        30.94        18.12 
TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 TCGA-37-4130 TCGA-37-4132 
        1.08         3.95         0.43         0.39         8.09         7.46 
TCGA-37-5819 TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 
        3.39        47.80        74.07        44.71        68.58        55.17 
TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 
       70.03        60.76         1.71        24.33         1.94        27.35 
TCGA-39-5034 TCGA-39-5035 TCGA-39-5037 TCGA-39-5039 TCGA-39-5040 TCGA-43-2576 
       36.39        15.58        35.70        17.88        17.06        40.21 
TCGA-43-2578 TCGA-43-2581 TCGA-43-3920 TCGA-43-5668 TCGA-43-5670 TCGA-43-6143 
       22.49        38.66        33.07        11.47        18.05        12.36 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6773 TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 
       24.89        10.19         3.78         1.58        66.51         6.64 
TCGA-43-8116 TCGA-43-8118 TCGA-43-A475 TCGA-43-A56V TCGA-46-3768 TCGA-51-4079 
        6.35         2.93         9.73         5.06         9.96         0.39 
TCGA-51-4080 TCGA-52-7622 TCGA-52-7809 TCGA-52-7812 TCGA-56-6545 TCGA-56-6546 
        0.39        17.79         5.42        27.45         2.04         1.02 
TCGA-56-7223 TCGA-56-7580 TCGA-56-7582 TCGA-56-7730 TCGA-56-8503 TCGA-56-8504 
        0.99         1.32         0.85         0.20         1.35         5.82 
TCGA-56-8622 TCGA-56-8624 TCGA-56-8625 TCGA-56-8626 TCGA-56-8628 TCGA-56-8629 
        1.78         1.18         2.07         0.56         0.53         1.12 
TCGA-56-A49D TCGA-56-A4BY TCGA-56-A4ZJ TCGA-56-A4ZK TCGA-56-A5DS TCGA-58-8387 
        0.99         0.99         1.02         0.13         0.26        13.25 
TCGA-58-8388 TCGA-58-8390 TCGA-58-8391 TCGA-58-8392 TCGA-58-8393 TCGA-58-A46J 
       12.43        29.95        71.24        16.47        34.78        64.87 
TCGA-58-A46K TCGA-58-A46M TCGA-58-A46N TCGA-60-2695 TCGA-60-2697 TCGA-60-2698 
       34.36        23.24        17.72        21.07        12.23        10.22 
TCGA-60-2703 TCGA-60-2704 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2712 
       96.82        37.94        80.42        49.48        66.51         9.01 
TCGA-60-2713 TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 
       56.91        35.34        48.49        42.61         3.16        32.28 
TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2734 
       29.85        35.90        23.57        26.79        11.77        43.10 
TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2757 
        2.01        21.07         0.99         2.01         0.92         0.99 
TCGA-66-2758 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 
       20.98         0.99         2.01         1.02         2.01         2.01 
TCGA-66-2769 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 
        7.07        23.01        19.00         3.02         2.01        19.00 
TCGA-66-2780 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 
       12.03        24.95         1.94        25.97        40.01        22.98 
TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2795 
        4.04        22.98         5.03        30.02        10.06         4.01 
TCGA-66-2800 TCGA-68-7757 TCGA-68-8251 TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 
       49.05         6.94         3.12        29.56        73.08        75.09 
TCGA-77-7138 TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 
       11.18        89.95        20.78         0.49        42.25        70.09 
TCGA-77-7337 TCGA-77-7465 TCGA-77-8007 TCGA-77-8008 TCGA-77-8009 TCGA-77-8128 
      106.95        15.75         6.51        86.76        53.95        37.81 
TCGA-77-8130 TCGA-77-8131 TCGA-77-8133 TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 
       82.92        12.59        53.92        17.69       104.09        11.54 
TCGA-77-8145 TCGA-77-8148 TCGA-77-8150 TCGA-77-8153 TCGA-77-8154 TCGA-77-A5FZ 
        6.97         9.63        54.41        55.33        35.90       126.18 
TCGA-77-A5G3 TCGA-77-A5GB TCGA-77-A5GH TCGA-85-6798 TCGA-85-7696 TCGA-85-7698 
      117.57        30.81        23.44         1.12         0.59         1.61 
TCGA-85-7699 TCGA-85-7844 TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 TCGA-85-8277 
        0.03         1.25         0.85         1.97         0.53         0.36 
TCGA-85-8288 TCGA-85-8350 TCGA-85-8352 TCGA-85-8353 TCGA-85-8354 TCGA-85-8355 
        1.78         1.97         2.20         1.78         2.01         0.66 
TCGA-85-8479 TCGA-85-8481 TCGA-85-8580 TCGA-85-8582 TCGA-85-8664 TCGA-85-8666 
        0.72         0.66        14.60        13.91         0.10        15.58 
TCGA-85-A4QR TCGA-85-A50M TCGA-85-A513 TCGA-85-A53L TCGA-90-6837 TCGA-90-7766 
        0.82         0.62         0.79         0.43        24.89         9.50 
TCGA-90-7767 TCGA-90-7769 TCGA-90-7964 TCGA-90-A4EE TCGA-92-7340 TCGA-92-7341 
        2.93        11.77        14.07        10.88         2.70         3.48 
TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 TCGA-96-7544 TCGA-96-7545 
        5.26         2.27         2.86         0.16        39.88        44.15 
TCGA-96-8169 TCGA-96-8170 TCGA-96-A4JK TCGA-96-A4JL TCGA-98-7454 TCGA-98-8020 
        6.18         6.90         8.98         6.02         8.42         2.73 
TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 TCGA-J1-A4AH TCGA-L3-A4E7 TCGA-LA-A446 
       13.58         7.33        10.13         7.30         1.15         1.18 
TCGA-NC-A5HE 
       56.61 

  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
              0.03               0.03 
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
             92.71             173.79 
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
               9.7               14.6 
[1] "0.0 - 92.7 (9.7)"   "0.0 - 173.8 (14.6)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
  "19Q LOSS MUTATED"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-22-A5C4         TCGA-33-4532         TCGA-33-4533 
  "19Q LOSS MUTATED"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-33-4538         TCGA-33-4547         TCGA-33-4566 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-33-4582         TCGA-33-4583         TCGA-33-4586 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-33-4587         TCGA-33-4589         TCGA-33-6737 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-33-6738         TCGA-34-2596         TCGA-34-2600 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-34-2604         TCGA-34-2605         TCGA-34-2608 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-34-2609         TCGA-34-5231         TCGA-34-5232 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-34-5234         TCGA-34-5236         TCGA-34-5239 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-34-5240         TCGA-34-5241         TCGA-34-5927 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-34-5928         TCGA-34-5929         TCGA-34-7107 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-3792 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4132 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-37-4133         TCGA-37-4135         TCGA-37-4141 
  "19Q LOSS MUTATED"   "19Q LOSS MUTATED"   "19Q LOSS MUTATED" 
        TCGA-37-5819         TCGA-39-5011         TCGA-39-5016 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-39-5019         TCGA-39-5021         TCGA-39-5022 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-39-5024         TCGA-39-5027         TCGA-39-5028 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-39-5029         TCGA-39-5030         TCGA-39-5031 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-39-5034         TCGA-39-5035         TCGA-39-5036 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-39-5037         TCGA-39-5039         TCGA-39-5040 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-43-8118 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-43-A474         TCGA-43-A475         TCGA-43-A56V 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-46-3768         TCGA-46-6025         TCGA-46-6026 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED"   "19Q LOSS MUTATED" 
        TCGA-51-4079         TCGA-51-4080         TCGA-51-4081 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-52-7622         TCGA-52-7809         TCGA-52-7810 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-52-7811         TCGA-52-7812         TCGA-56-1622 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-56-5897         TCGA-56-5898         TCGA-56-6545 
  "19Q LOSS MUTATED"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-56-6546         TCGA-56-7221         TCGA-56-7222 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED"   "19Q LOSS MUTATED" 
        TCGA-56-7223         TCGA-56-7579         TCGA-56-7580 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-56-7582         TCGA-56-7730         TCGA-56-7822 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-56-8503         TCGA-56-8504         TCGA-56-8622 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-56-8624         TCGA-56-8625         TCGA-56-8626 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-56-8628         TCGA-56-8629         TCGA-56-A49D 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-56-A4BX         TCGA-56-A4BY         TCGA-56-A4ZJ 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-56-A4ZK         TCGA-56-A5DS         TCGA-58-8386 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-58-8387         TCGA-58-8388         TCGA-58-8390 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-58-8391         TCGA-58-8392         TCGA-58-8393 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-58-A46J         TCGA-58-A46K         TCGA-58-A46L 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-58-A46M         TCGA-58-A46N         TCGA-60-2695 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-60-2696         TCGA-60-2697         TCGA-60-2698 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-60-2703         TCGA-60-2704         TCGA-60-2706 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-96-8169         TCGA-96-8170         TCGA-96-A4JK 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-96-A4JL         TCGA-98-7454         TCGA-98-8020 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-LA-A446         TCGA-MF-A522         TCGA-NC-A5HE 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
  "19Q LOSS MUTATED"   "19Q LOSS MUTATED" 
[1] "hr=" "1.1"
D75V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  19Q LOSS MUTATED         1       13       26        0        17        14
  19Q LOSS WILD-TYPE       0       55      107        1        33        57
                    vv
clus                 STAGE IIIA STAGE IIIB STAGE IV
  19Q LOSS MUTATED           10          4        1
  19Q LOSS WILD-TYPE         44         16        4
D75V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  19Q LOSS MUTATED    21  53  10   5
  19Q LOSS WILD-TYPE  72 197  34  14
D75V4, multiclass
    clus
vv   19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  T1               21                 72
  T2               53                197
  T3               10                 34
  T4                5                 14
                    vv
clus                  N0  N1  N2  N3
  19Q LOSS MUTATED    59  20   8   0
  19Q LOSS WILD-TYPE 194  89  26   5
D75V5, multiclass
    clus
vv   19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  N0               59                194
  N1               20                 89
  N2                8                 26
  N3                0                  5
                    vv
clus                  M0  M1  MX
  19Q LOSS MUTATED    75   1  11
  19Q LOSS WILD-TYPE 273   4  36
D75V6, multiclass
    clus
vv   19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  M0               75                273
  M1                1                  4
  MX               11                 36
D75V7, binary
                    cls
clus                   0   1
  19Q LOSS MUTATED    15  74
  19Q LOSS WILD-TYPE  86 231
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19Q LOSS MUTATED     15   74
  19Q LOSS WILD-TYPE   86  231
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  FEMALE               15                 86
  MALE                 74                231
D75V8, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  19Q LOSS MUTATED                                       3
  19Q LOSS WILD-TYPE                                     9
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  19Q LOSS MUTATED                                        2
  19Q LOSS WILD-TYPE                                      4
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  19Q LOSS MUTATED                                         1
  19Q LOSS WILD-TYPE                                       0
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  19Q LOSS MUTATED                                                            83
  19Q LOSS WILD-TYPE                                                         304
D75V9, multiclass
                                                             clus
vv                                                            19Q LOSS MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      3
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                     2
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               83
                                                             clus
vv                                                            19Q LOSS WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                        9
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                       4
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                      0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                304
D75V10, binary
                    cls
clus                   0   1
  19Q LOSS MUTATED     4  85
  19Q LOSS WILD-TYPE   8 309
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19Q LOSS MUTATED      4   85
  19Q LOSS WILD-TYPE    8  309
     clus
vv    19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  NO                 4                  8
  YES               85                309
D75V11, continuous
D75V12, continuous
                    vv
clus                  R0  R1  R2  RX
  19Q LOSS MUTATED    67   2   1   6
  19Q LOSS WILD-TYPE 263   6   3  12
D75V13, multiclass
    clus
vv   19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  R0               67                263
  R1                2                  6
  R2                1                  3
  RX                6                 12

Clustering(76) Variable = 20P LOSS MUTATION ANALYSIS
D76V1, survival
                    sevent
clus2                  0   1
  20P LOSS MUTATED    24  11
  20P LOSS WILD-TYPE 215 127
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                35                342 
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                11                127 
$`20P LOSS MUTATED`
TCGA-18-3416 TCGA-18-4721 TCGA-21-1078 TCGA-21-5787 TCGA-22-4593 TCGA-22-5478 
       28.34        90.51        15.55        10.82        35.08         0.79 
TCGA-33-4583 TCGA-33-4586 TCGA-37-3792 TCGA-37-4135 TCGA-39-5034 TCGA-43-3394 
      141.34        14.07         0.39         6.81        36.39        27.02 
TCGA-43-6771 TCGA-52-7810 TCGA-60-2706 TCGA-60-2712 TCGA-60-2714 TCGA-66-2755 
        5.42        30.31        92.71         9.01        50.33         0.92 
TCGA-66-2766 TCGA-66-2768 TCGA-66-2790 TCGA-66-2791 TCGA-77-7337 TCGA-77-7463 
        1.02         2.01        22.98         5.03       106.95        46.78 
TCGA-77-7465 TCGA-77-8144 TCGA-85-6560 TCGA-85-7950 TCGA-85-8071 TCGA-85-8352 
       15.75        27.39         0.36         1.97        14.07         2.20 
TCGA-85-A4QR TCGA-92-8065 TCGA-96-7544 TCGA-96-8169 TCGA-NC-A5HG 
        0.82         2.27        39.88         6.18        50.86 

$`20P LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       11.34        13.02        59.51        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 
        6.15         2.79         3.02        27.16       119.54        46.88 
TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 TCGA-21-1079 TCGA-21-1080 
       99.16        70.13        60.89        34.78        31.69       122.43 
TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 
        9.30       119.80         8.78        31.63        88.08        41.69 
TCGA-21-5786 TCGA-21-A5DI TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 
       33.93        32.19        19.99         7.33        14.93         4.31 
TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 
       64.21         1.74        14.10        27.02        48.82        20.45 
TCGA-22-4594 TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 
       48.33        24.13         0.56        38.17        34.75        13.12 
TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 
       32.02        19.30         9.53        11.77        31.73        64.90 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 
       63.52        14.60        44.22        54.28        71.34        79.20 
TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 
       11.74        18.84        30.08        62.86        56.32        16.60 
TCGA-22-A5C4 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 
        0.95         7.63       114.05        97.94        43.10       173.79 
TCGA-33-4582 TCGA-33-4587 TCGA-33-4589 TCGA-33-6737 TCGA-33-6738 TCGA-34-2596 
      103.53        54.44        10.98        19.76        26.99         2.63 
TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 
       61.61        31.50        28.96        32.84        31.23        50.24 
TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 
       67.79        56.38         9.04        23.24        12.00        14.07 
TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 
       30.94        18.12         4.96         1.08         3.95         0.43 
TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 TCGA-37-4141 TCGA-37-5819 
        6.54         8.09         7.46         7.82         0.39         3.39 
TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 
       47.80        74.07        44.71        68.58        55.17        70.03 
TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 
       60.76         1.71        24.33         1.94        27.35        15.58 
TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-39-5040 TCGA-43-2576 TCGA-43-2578 
       35.64        35.70        17.88        17.06        40.21        22.49 
TCGA-43-2581 TCGA-43-3920 TCGA-43-5668 TCGA-43-5670 TCGA-43-6143 TCGA-43-6647 
       38.66        33.07        11.47        18.05        12.36        24.89 
TCGA-43-6770 TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 
       10.19         3.78         6.97         1.58        66.51         6.64 
TCGA-43-8116 TCGA-43-8118 TCGA-43-A474 TCGA-43-A475 TCGA-43-A56V TCGA-46-3768 
        6.35         2.93        11.61         9.73         5.06         9.96 
TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 
       10.65        13.87         0.39         0.39        29.95        17.79 
TCGA-52-7809 TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 TCGA-56-5898 
        5.42         8.75        27.45        28.93         0.10        18.25 
TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 
        2.04         1.02         0.99         0.43         0.99         1.45 
TCGA-56-7580 TCGA-56-7582 TCGA-56-7730 TCGA-56-7822 TCGA-56-8503 TCGA-56-8504 
        1.32         0.85         0.20         0.03         1.35         5.82 
TCGA-56-8622 TCGA-56-8624 TCGA-56-8625 TCGA-56-8626 TCGA-56-8628 TCGA-56-8629 
        1.78         1.18         2.07         0.56         0.53         1.12 
TCGA-56-A49D TCGA-56-A4BX TCGA-56-A4BY TCGA-56-A4ZJ TCGA-56-A4ZK TCGA-56-A5DS 
        0.99         1.51         0.99         1.02         0.13         0.26 
TCGA-58-8386 TCGA-58-8387 TCGA-58-8388 TCGA-58-8390 TCGA-58-8391 TCGA-58-8392 
        0.03        13.25        12.43        29.95        71.24        16.47 
TCGA-58-8393 TCGA-58-A46J TCGA-58-A46K TCGA-58-A46L TCGA-58-A46M TCGA-58-A46N 
       34.78        64.87        34.36        36.59        23.24        17.72 
TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 
       21.07         3.58        12.23        10.22        96.82        37.94 
TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2713 
       21.70        80.42        49.48        66.51        41.39        56.91 
TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 
       35.34        48.49        42.61         3.16        32.28        29.85 
TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 
       35.90        23.57        26.79        11.77        16.96        43.10 
TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 TCGA-66-2756 
        2.01        21.07         0.99         1.02         2.01         0.99 
TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2767 
        0.99        20.98        25.02         0.99         2.01         2.01 
TCGA-66-2769 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 
        7.07        23.01        19.00         3.02         2.01        19.00 
TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 
       12.03         3.98        12.00        24.95         1.94        25.97 
TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 
       40.01        22.98         4.04        30.02        10.06        54.08 
TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 TCGA-68-7757 TCGA-68-8250 
        4.01        49.05         2.73         6.64         6.94         8.02 
TCGA-68-8251 TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 
        3.12        29.56        73.08        75.09        23.28        11.18 
TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 TCGA-77-7338 
       89.95        20.78         0.49        42.25        70.09         0.16 
TCGA-77-8007 TCGA-77-8008 TCGA-77-8009 TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 
        6.51        86.76        53.95        37.81        82.92        12.59 
TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 TCGA-77-8143 
       53.92        39.09        17.69       104.09        11.54        26.40 
TCGA-77-8145 TCGA-77-8148 TCGA-77-8150 TCGA-77-8153 TCGA-77-8154 TCGA-77-8156 
        6.97         9.63        54.41        55.33        35.90         0.33 
TCGA-77-A5FZ TCGA-77-A5G3 TCGA-77-A5GB TCGA-77-A5GH TCGA-85-6561 TCGA-85-6798 
      126.18       117.57        30.81        23.44         0.79         1.12 
TCGA-85-7696 TCGA-85-7697 TCGA-85-7698 TCGA-85-7699 TCGA-85-7843 TCGA-85-7844 
        0.59         0.33         1.61         0.03         1.15         1.25 
TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 TCGA-85-8072 TCGA-85-8276 
        0.85         1.97         0.53        16.77         1.18         0.43 
TCGA-85-8277 TCGA-85-8287 TCGA-85-8288 TCGA-85-8350 TCGA-85-8351 TCGA-85-8353 
        0.36         1.45         1.78         1.97         1.81         1.78 
TCGA-85-8354 TCGA-85-8355 TCGA-85-8479 TCGA-85-8481 TCGA-85-8580 TCGA-85-8582 
        2.01         0.66         0.72         0.66        14.60        13.91 
TCGA-85-8664 TCGA-85-8666 TCGA-85-A4CL TCGA-85-A50M TCGA-85-A513 TCGA-85-A53L 
        0.10        15.58         0.46         0.62         0.79         0.43 
TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 TCGA-90-7769 TCGA-90-7964 TCGA-90-A4ED 
       24.89         9.50         2.93        11.77        14.07         8.02 
TCGA-90-A4EE TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 TCGA-92-8064 TCGA-94-7033 
       10.88         2.70         3.48         4.01         5.26         2.86 
TCGA-94-7557 TCGA-94-7943 TCGA-96-7545 TCGA-96-8170 TCGA-96-A4JK TCGA-96-A4JL 
        0.16        11.70        44.15         6.90         8.98         6.02 
TCGA-98-7454 TCGA-98-8020 TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 TCGA-J1-A4AH 
        8.42         2.73        13.58         7.33        10.13         7.30 
TCGA-L3-A4E7 TCGA-L3-A524 TCGA-LA-A446 TCGA-MF-A522 TCGA-NC-A5HE TCGA-NC-A5HI 
        1.15        14.76         1.18         3.02        56.61        37.32 

  20P LOSS MUTATED 20P LOSS WILD-TYPE 
              0.36               0.03 
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
            141.34             173.79 
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
            14.070             13.185 
[1] "0.4 - 141.3 (14.1)" "0.0 - 173.8 (13.2)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-22-A5C4         TCGA-33-4532         TCGA-33-4533 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-33-4538         TCGA-33-4547         TCGA-33-4566 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-33-4582         TCGA-33-4583         TCGA-33-4586 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED"   "20P LOSS MUTATED" 
        TCGA-33-4587         TCGA-33-4589         TCGA-33-6737 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-33-6738         TCGA-34-2596         TCGA-34-2600 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-34-2604         TCGA-34-2605         TCGA-34-2608 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-34-2609         TCGA-34-5231         TCGA-34-5232 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-34-5234         TCGA-34-5236         TCGA-34-5239 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
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"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
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"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
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"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
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"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
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"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
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"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
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"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
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"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
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"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
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"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
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"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2756 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-66-2770         TCGA-66-2771         TCGA-66-2773 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-66-2785         TCGA-66-2786         TCGA-66-2787 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-68-7755         TCGA-68-7756         TCGA-68-7757 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-68-8250         TCGA-68-8251         TCGA-77-6842 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-77-6843         TCGA-77-6844         TCGA-77-6845 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-77-7138         TCGA-77-7139         TCGA-77-7140 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-77-7141         TCGA-77-7142         TCGA-77-7335 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-77-7337         TCGA-77-7338         TCGA-77-7463 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-77-7465         TCGA-77-8007         TCGA-77-8008 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-77-8009         TCGA-77-8128         TCGA-77-8130 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-77-8131         TCGA-77-8133         TCGA-77-8136 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-77-8138         TCGA-77-8139         TCGA-77-8140 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-77-8143         TCGA-77-8144         TCGA-77-8145 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-77-8148         TCGA-77-8150         TCGA-77-8153 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-77-8154         TCGA-77-8156         TCGA-77-A5FZ 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-77-A5G3         TCGA-77-A5GB         TCGA-77-A5GH 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-96-8169         TCGA-96-8170         TCGA-96-A4JK 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-96-A4JL         TCGA-98-7454         TCGA-98-8020 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-LA-A446         TCGA-MF-A522         TCGA-NC-A5HE 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
[1] "hr=" "1.3"
D76V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  20P LOSS MUTATED         0        5       10        0         3        10
  20P LOSS WILD-TYPE       1       63      123        1        47        61
                    vv
clus                 STAGE IIIA STAGE IIIB STAGE IV
  20P LOSS MUTATED            6          2        0
  20P LOSS WILD-TYPE         48         18        5
D76V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  20P LOSS MUTATED     5  27   4   0
  20P LOSS WILD-TYPE  88 223  40  19
D76V4, multiclass
    clus
vv   20P LOSS MUTATED 20P LOSS WILD-TYPE
  T1                5                 88
  T2               27                223
  T3                4                 40
  T4                0                 19
                    vv
clus                  N0  N1  N2  N3
  20P LOSS MUTATED    20  11   4   1
  20P LOSS WILD-TYPE 233  98  30   4
D76V5, multiclass
    clus
vv   20P LOSS MUTATED 20P LOSS WILD-TYPE
  N0               20                233
  N1               11                 98
  N2                4                 30
  N3                1                  4
                    vv
clus                  M0  M1  MX
  20P LOSS MUTATED    33   0   3
  20P LOSS WILD-TYPE 315   5  44
D76V6, multiclass
    clus
vv   20P LOSS MUTATED 20P LOSS WILD-TYPE
  M0               33                315
  M1                0                  5
  MX                3                 44
D76V7, binary
                    cls
clus                   0   1
  20P LOSS MUTATED     6  30
  20P LOSS WILD-TYPE  95 275
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20P LOSS MUTATED      6   30
  20P LOSS WILD-TYPE   95  275
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  FEMALE                6                 95
  MALE                 30                275
D76V8, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  20P LOSS MUTATED                                       1
  20P LOSS WILD-TYPE                                    11
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  20P LOSS MUTATED                                        0
  20P LOSS WILD-TYPE                                      6
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  20P LOSS MUTATED                                         0
  20P LOSS WILD-TYPE                                       1
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  20P LOSS MUTATED                                                            35
  20P LOSS WILD-TYPE                                                         352
D76V9, multiclass
                                                             clus
vv                                                            20P LOSS MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      1
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                     0
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                    0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               35
                                                             clus
vv                                                            20P LOSS WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       11
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                       6
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                      1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                352
D76V10, binary
                    cls
clus                   0   1
  20P LOSS MUTATED     1  35
  20P LOSS WILD-TYPE  11 359
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20P LOSS MUTATED      1   35
  20P LOSS WILD-TYPE   11  359
     clus
vv    20P LOSS MUTATED 20P LOSS WILD-TYPE
  NO                 1                 11
  YES               35                359
D76V11, continuous
D76V12, continuous
                    vv
clus                  R0  R1  R2  RX
  20P LOSS MUTATED    27   1   0   3
  20P LOSS WILD-TYPE 303   7   4  15
D76V13, multiclass
    clus
vv   20P LOSS MUTATED 20P LOSS WILD-TYPE
  R0               27                303
  R1                1                  7
  R2                0                  4
  RX                3                 15

Clustering(77) Variable = 20Q LOSS MUTATION ANALYSIS
D77V1, survival
                    sevent
clus2                  0   1
  20Q LOSS MUTATED    24  14
  20Q LOSS WILD-TYPE 215 124
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                38                339 
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                14                124 
$`20Q LOSS MUTATED`
TCGA-18-3411 TCGA-18-3415 TCGA-18-3416 TCGA-18-4721 TCGA-21-1078 TCGA-22-4604 
       46.52        59.51        28.34        90.51        15.55        13.12 
TCGA-22-5478 TCGA-33-4583 TCGA-33-4586 TCGA-34-2600 TCGA-34-7107 TCGA-39-5021 
        0.79       141.34        14.07        61.61         1.08        68.58 
TCGA-39-5034 TCGA-43-3394 TCGA-43-6771 TCGA-46-6025 TCGA-52-7622 TCGA-56-7580 
       36.39        27.02         5.42        10.65        17.79         1.32 
TCGA-56-A49D TCGA-58-8392 TCGA-60-2698 TCGA-60-2704 TCGA-60-2712 TCGA-60-2723 
        0.99        16.47        10.22        37.94         9.01        35.90 
TCGA-66-2755 TCGA-66-2766 TCGA-66-2791 TCGA-77-7142 TCGA-77-8144 TCGA-77-8153 
        0.92         1.02         5.03        42.25        27.39        55.33 
TCGA-77-8156 TCGA-85-7698 TCGA-85-7950 TCGA-85-8071 TCGA-85-8352 TCGA-92-8065 
        0.33         1.61         1.97        14.07         2.20         2.27 
TCGA-96-A4JK TCGA-L3-A524 
        8.98        14.76 

$`20Q LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3412 
       12.16         4.47        81.07        79.46         4.80        11.34 
TCGA-18-3414 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 
       13.02        24.92         1.61        43.76         6.15         2.79 
TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 
        3.02        27.16       119.54        46.88        99.16        70.13 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1079 TCGA-21-1080 TCGA-21-1081 TCGA-21-1082 
       60.89        34.78        31.69       122.43         9.30       119.80 
TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 
        8.78        31.63        88.08        41.69        33.93        10.82 
TCGA-21-A5DI TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 
       32.19        19.99         7.33        14.93         4.31        64.21 
TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 TCGA-22-4593 
        1.74        14.10        27.02        48.82        20.45        35.08 
TCGA-22-4594 TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 TCGA-22-4601 TCGA-22-4605 
       48.33        24.13         0.56        38.17        34.75        32.02 
TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       19.30         9.53        11.77        31.73        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 TCGA-22-5482 
       14.60        44.22        54.28        71.34        79.20        11.74 
TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-22-A5C4 
       18.84        30.08        62.86        56.32        16.60         0.95 
TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 
        7.63       114.05        97.94        43.10       173.79       103.53 
TCGA-33-4587 TCGA-33-4589 TCGA-33-6737 TCGA-33-6738 TCGA-34-2596 TCGA-34-2604 
       54.44        10.98        19.76        26.99         2.63        31.50 
TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 
       28.96        32.84        31.23        50.24        67.79        56.38 
TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 
        9.04        23.24        12.00        14.07        30.94        18.12 
TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 
        4.96         3.95         0.43         0.39         6.54         8.09 
TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5011 
        7.46         7.82         6.81         0.39         3.39        47.80 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       74.07        44.71        55.17        70.03        60.76         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 
       24.33         1.94        27.35        15.58        35.64        35.70 
TCGA-39-5039 TCGA-39-5040 TCGA-43-2576 TCGA-43-2578 TCGA-43-2581 TCGA-43-3920 
       17.88        17.06        40.21        22.49        38.66        33.07 
TCGA-43-5668 TCGA-43-5670 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6773 
       11.47        18.05        12.36        24.89        10.19         3.78 
TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 TCGA-43-8118 
        6.97         1.58        66.51         6.64         6.35         2.93 
TCGA-43-A474 TCGA-43-A475 TCGA-43-A56V TCGA-46-3768 TCGA-46-6026 TCGA-51-4079 
       11.61         9.73         5.06         9.96        13.87         0.39 
TCGA-51-4080 TCGA-51-4081 TCGA-52-7809 TCGA-52-7810 TCGA-52-7811 TCGA-52-7812 
        0.39        29.95         5.42        30.31         8.75        27.45 
TCGA-56-1622 TCGA-56-5897 TCGA-56-5898 TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 
       28.93         0.10        18.25         2.04         1.02         0.99 
TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 TCGA-56-7582 TCGA-56-7730 TCGA-56-7822 
        0.43         0.99         1.45         0.85         0.20         0.03 
TCGA-56-8503 TCGA-56-8504 TCGA-56-8622 TCGA-56-8624 TCGA-56-8625 TCGA-56-8626 
        1.35         5.82         1.78         1.18         2.07         0.56 
TCGA-56-8628 TCGA-56-8629 TCGA-56-A4BX TCGA-56-A4BY TCGA-56-A4ZJ TCGA-56-A4ZK 
        0.53         1.12         1.51         0.99         1.02         0.13 
TCGA-56-A5DS TCGA-58-8386 TCGA-58-8387 TCGA-58-8388 TCGA-58-8390 TCGA-58-8391 
        0.26         0.03        13.25        12.43        29.95        71.24 
TCGA-58-8393 TCGA-58-A46J TCGA-58-A46K TCGA-58-A46L TCGA-58-A46M TCGA-58-A46N 
       34.78        64.87        34.36        36.59        23.24        17.72 
TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 TCGA-60-2703 TCGA-60-2706 TCGA-60-2707 
       21.07         3.58        12.23        96.82        92.71        21.70 
TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2713 TCGA-60-2714 
       80.42        49.48        66.51        41.39        56.91        50.33 
TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 
       35.34        48.49        42.61         3.16        32.28        29.85 
TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 
       23.57        26.79        11.77        16.96        43.10         2.01 
TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 TCGA-66-2756 TCGA-66-2757 
       21.07         0.99         1.02         2.01         0.99         0.99 
TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2767 TCGA-66-2768 
       20.98        25.02         0.99         2.01         2.01         2.01 
TCGA-66-2769 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 
        7.07        23.01        19.00         3.02         2.01        19.00 
TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 
       12.03         3.98        12.00        24.95         1.94        25.97 
TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 TCGA-66-2792 TCGA-66-2793 
       40.01        22.98         4.04        22.98        30.02        10.06 
TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 TCGA-68-7757 
       54.08         4.01        49.05         2.73         6.64         6.94 
TCGA-68-8250 TCGA-68-8251 TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 
        8.02         3.12        29.56        73.08        75.09        23.28 
TCGA-77-7138 TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 TCGA-77-7335 TCGA-77-7337 
       11.18        89.95        20.78         0.49        70.09       106.95 
TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 TCGA-77-8007 TCGA-77-8008 TCGA-77-8009 
        0.16        46.78        15.75         6.51        86.76        53.95 
TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 
       37.81        82.92        12.59        53.92        39.09        17.69 
TCGA-77-8139 TCGA-77-8140 TCGA-77-8143 TCGA-77-8145 TCGA-77-8148 TCGA-77-8150 
      104.09        11.54        26.40         6.97         9.63        54.41 
TCGA-77-8154 TCGA-77-A5FZ TCGA-77-A5G3 TCGA-77-A5GB TCGA-77-A5GH TCGA-85-6560 
       35.90       126.18       117.57        30.81        23.44         0.36 
TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 TCGA-85-7697 TCGA-85-7699 TCGA-85-7843 
        0.79         1.12         0.59         0.33         0.03         1.15 
TCGA-85-7844 TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 TCGA-85-8072 
        1.25         0.85         1.97         0.53        16.77         1.18 
TCGA-85-8276 TCGA-85-8277 TCGA-85-8287 TCGA-85-8288 TCGA-85-8350 TCGA-85-8351 
        0.43         0.36         1.45         1.78         1.97         1.81 
TCGA-85-8353 TCGA-85-8354 TCGA-85-8355 TCGA-85-8479 TCGA-85-8481 TCGA-85-8580 
        1.78         2.01         0.66         0.72         0.66        14.60 
TCGA-85-8582 TCGA-85-8664 TCGA-85-8666 TCGA-85-A4CL TCGA-85-A4QR TCGA-85-A50M 
       13.91         0.10        15.58         0.46         0.82         0.62 
TCGA-85-A513 TCGA-85-A53L TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 TCGA-90-7769 
        0.79         0.43        24.89         9.50         2.93        11.77 
TCGA-90-7964 TCGA-90-A4ED TCGA-90-A4EE TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 
       14.07         8.02        10.88         2.70         3.48         4.01 
TCGA-92-8064 TCGA-94-7033 TCGA-94-7557 TCGA-94-7943 TCGA-96-7544 TCGA-96-7545 
        5.26         2.86         0.16        11.70        39.88        44.15 
TCGA-96-8169 TCGA-96-8170 TCGA-96-A4JL TCGA-98-7454 TCGA-98-8020 TCGA-98-8021 
        6.18         6.90         6.02         8.42         2.73        13.58 
TCGA-98-8022 TCGA-98-8023 TCGA-J1-A4AH TCGA-L3-A4E7 TCGA-LA-A446 TCGA-MF-A522 
        7.33        10.13         7.30         1.15         1.18         3.02 
TCGA-NC-A5HE TCGA-NC-A5HG TCGA-NC-A5HI 
       56.61        50.86        37.32 

  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
              0.33               0.03 
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
            141.34             173.79 
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
             14.07              13.25 
[1] "0.3 - 141.3 (14.1)" "0.0 - 173.8 (13.2)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-22-A5C4         TCGA-33-4532         TCGA-33-4533 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-33-4538         TCGA-33-4547         TCGA-33-4566 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-33-4582         TCGA-33-4583         TCGA-33-4586 
"20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED"   "20Q LOSS MUTATED" 
        TCGA-33-4587         TCGA-33-4589         TCGA-33-6737 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-33-6738         TCGA-34-2596         TCGA-34-2600 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-34-2604         TCGA-34-2605         TCGA-34-2608 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-34-2609         TCGA-34-5231         TCGA-34-5232 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-34-5234         TCGA-34-5236         TCGA-34-5239 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-34-5240         TCGA-34-5241         TCGA-34-5927 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-34-5928         TCGA-34-5929         TCGA-34-7107 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-3792 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4132 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-37-4133         TCGA-37-4135         TCGA-37-4141 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-37-5819         TCGA-39-5011         TCGA-39-5016 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-39-5019         TCGA-39-5021         TCGA-39-5022 
"20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" 
        TCGA-39-5024         TCGA-39-5027         TCGA-39-5028 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-39-5029         TCGA-39-5030         TCGA-39-5031 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-39-5034         TCGA-39-5035         TCGA-39-5036 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-39-5037         TCGA-39-5039         TCGA-39-5040 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-43-8118 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-43-A474         TCGA-43-A475         TCGA-43-A56V 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-46-3768         TCGA-46-6025         TCGA-46-6026 
"20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" 
        TCGA-51-4079         TCGA-51-4080         TCGA-51-4081 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-52-7622         TCGA-52-7809         TCGA-52-7810 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-52-7811         TCGA-52-7812         TCGA-56-1622 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-56-5897         TCGA-56-5898         TCGA-56-6545 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-56-6546         TCGA-56-7221         TCGA-56-7222 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-56-7223         TCGA-56-7579         TCGA-56-7580 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-56-7582         TCGA-56-7730         TCGA-56-7822 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-56-8503         TCGA-56-8504         TCGA-56-8622 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-56-8624         TCGA-56-8625         TCGA-56-8626 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-56-8628         TCGA-56-8629         TCGA-56-A49D 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-56-A4BX         TCGA-56-A4BY         TCGA-56-A4ZJ 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-56-A4ZK         TCGA-56-A5DS         TCGA-58-8386 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-58-8387         TCGA-58-8388         TCGA-58-8390 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-58-8391         TCGA-58-8392         TCGA-58-8393 
"20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" 
        TCGA-58-A46J         TCGA-58-A46K         TCGA-58-A46L 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-58-A46M         TCGA-58-A46N         TCGA-60-2695 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-60-2696         TCGA-60-2697         TCGA-60-2698 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-60-2703         TCGA-60-2704         TCGA-60-2706 
"20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2756 
"20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-66-2770         TCGA-66-2771         TCGA-66-2773 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-66-2785         TCGA-66-2786         TCGA-66-2787 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-68-7755         TCGA-68-7756         TCGA-68-7757 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-68-8250         TCGA-68-8251         TCGA-77-6842 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-77-6843         TCGA-77-6844         TCGA-77-6845 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-77-7138         TCGA-77-7139         TCGA-77-7140 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-77-7141         TCGA-77-7142         TCGA-77-7335 
"20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" 
        TCGA-77-7337         TCGA-77-7338         TCGA-77-7463 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-77-7465         TCGA-77-8007         TCGA-77-8008 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-77-8009         TCGA-77-8128         TCGA-77-8130 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-77-8131         TCGA-77-8133         TCGA-77-8136 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-77-8138         TCGA-77-8139         TCGA-77-8140 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-77-8143         TCGA-77-8144         TCGA-77-8145 
"20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" 
        TCGA-77-8148         TCGA-77-8150         TCGA-77-8153 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-77-8154         TCGA-77-8156         TCGA-77-A5FZ 
"20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" 
        TCGA-77-A5G3         TCGA-77-A5GB         TCGA-77-A5GH 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-96-8169         TCGA-96-8170         TCGA-96-A4JK 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-96-A4JL         TCGA-98-7454         TCGA-98-8020 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-LA-A446         TCGA-MF-A522         TCGA-NC-A5HE 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
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        TCGA-33-6738         TCGA-34-2596         TCGA-34-2600 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-34-2604         TCGA-34-2605         TCGA-34-2608 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-34-2609         TCGA-34-5231         TCGA-34-5232 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-34-5234         TCGA-34-5236         TCGA-34-5239 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-34-5240         TCGA-34-5241         TCGA-34-5927 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-34-5928         TCGA-34-5929         TCGA-34-7107 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-3792 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4132 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-37-4133         TCGA-37-4135         TCGA-37-4141 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-37-5819         TCGA-39-5011         TCGA-39-5016 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-39-5019         TCGA-39-5021         TCGA-39-5022 
"20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" 
        TCGA-39-5024         TCGA-39-5027         TCGA-39-5028 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-39-5029         TCGA-39-5030         TCGA-39-5031 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-39-5034         TCGA-39-5035         TCGA-39-5036 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-39-5037         TCGA-39-5039         TCGA-39-5040 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-43-8118 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-43-A474         TCGA-43-A475         TCGA-43-A56V 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-46-3768         TCGA-46-6025         TCGA-46-6026 
"20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" 
        TCGA-51-4079         TCGA-51-4080         TCGA-51-4081 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-52-7622         TCGA-52-7809         TCGA-52-7810 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-52-7811         TCGA-52-7812         TCGA-56-1622 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-56-5897         TCGA-56-5898         TCGA-56-6545 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-56-6546         TCGA-56-7221         TCGA-56-7222 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-56-7223         TCGA-56-7579         TCGA-56-7580 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-56-7582         TCGA-56-7730         TCGA-56-7822 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-56-8503         TCGA-56-8504         TCGA-56-8622 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-56-8624         TCGA-56-8625         TCGA-56-8626 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-56-8628         TCGA-56-8629         TCGA-56-A49D 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-56-A4BX         TCGA-56-A4BY         TCGA-56-A4ZJ 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-56-A4ZK         TCGA-56-A5DS         TCGA-58-8386 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-58-8387         TCGA-58-8388         TCGA-58-8390 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-58-8391         TCGA-58-8392         TCGA-58-8393 
"20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" 
        TCGA-58-A46J         TCGA-58-A46K         TCGA-58-A46L 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-58-A46M         TCGA-58-A46N         TCGA-60-2695 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-60-2696         TCGA-60-2697         TCGA-60-2698 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-60-2703         TCGA-60-2704         TCGA-60-2706 
"20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2756 
"20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-66-2770         TCGA-66-2771         TCGA-66-2773 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-66-2785         TCGA-66-2786         TCGA-66-2787 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-68-7755         TCGA-68-7756         TCGA-68-7757 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-68-8250         TCGA-68-8251         TCGA-77-6842 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-77-6843         TCGA-77-6844         TCGA-77-6845 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-77-7138         TCGA-77-7139         TCGA-77-7140 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-77-7141         TCGA-77-7142         TCGA-77-7335 
"20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" 
        TCGA-77-7337         TCGA-77-7338         TCGA-77-7463 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-77-7465         TCGA-77-8007         TCGA-77-8008 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-77-8009         TCGA-77-8128         TCGA-77-8130 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-77-8131         TCGA-77-8133         TCGA-77-8136 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-77-8138         TCGA-77-8139         TCGA-77-8140 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-77-8143         TCGA-77-8144         TCGA-77-8145 
"20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" 
        TCGA-77-8148         TCGA-77-8150         TCGA-77-8153 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-77-8154         TCGA-77-8156         TCGA-77-A5FZ 
"20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" 
        TCGA-77-A5G3         TCGA-77-A5GB         TCGA-77-A5GH 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-96-8169         TCGA-96-8170         TCGA-96-A4JK 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-96-A4JL         TCGA-98-7454         TCGA-98-8020 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-LA-A446         TCGA-MF-A522         TCGA-NC-A5HE 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
[1] "hr=" "1"  
D77V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  20Q LOSS MUTATED         0        5       17        1         2         9
  20Q LOSS WILD-TYPE       1       63      116        0        48        62
                    vv
clus                 STAGE IIIA STAGE IIIB STAGE IV
  20Q LOSS MUTATED            5          1        0
  20Q LOSS WILD-TYPE         49         19        5
D77V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  20Q LOSS MUTATED     6  30   4   0
  20Q LOSS WILD-TYPE  87 220  40  19
D77V4, multiclass
    clus
vv   20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  T1                6                 87
  T2               30                220
  T3                4                 40
  T4                0                 19
                    vv
clus                  N0  N1  N2  N3
  20Q LOSS MUTATED    25  10   4   1
  20Q LOSS WILD-TYPE 228  99  30   4
D77V5, multiclass
    clus
vv   20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  N0               25                228
  N1               10                 99
  N2                4                 30
  N3                1                  4
                    vv
clus                  M0  M1  MX
  20Q LOSS MUTATED    37   0   3
  20Q LOSS WILD-TYPE 311   5  44
D77V6, multiclass
    clus
vv   20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  M0               37                311
  M1                0                  5
  MX                3                 44
D77V7, binary
                    cls
clus                   0   1
  20Q LOSS MUTATED    11  29
  20Q LOSS WILD-TYPE  90 276
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20Q LOSS MUTATED     11   29
  20Q LOSS WILD-TYPE   90  276
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  FEMALE               11                 90
  MALE                 29                276
D77V8, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  20Q LOSS MUTATED                                       0
  20Q LOSS WILD-TYPE                                    12
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  20Q LOSS MUTATED                                        0
  20Q LOSS WILD-TYPE                                      6
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  20Q LOSS MUTATED                                         0
  20Q LOSS WILD-TYPE                                       1
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  20Q LOSS MUTATED                                                            40
  20Q LOSS WILD-TYPE                                                         347
D77V9, multiclass
                                                             clus
vv                                                            20Q LOSS MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      0
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                     0
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                    0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               40
                                                             clus
vv                                                            20Q LOSS WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       12
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                       6
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                      1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                347
D77V10, binary
                    cls
clus                   0   1
  20Q LOSS MUTATED     0  40
  20Q LOSS WILD-TYPE  12 354
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20Q LOSS MUTATED      0   40
  20Q LOSS WILD-TYPE   12  354
     clus
vv    20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  NO                 0                 12
  YES               40                354
D77V11, continuous
D77V12, continuous
                    vv
clus                  R0  R1  R2  RX
  20Q LOSS MUTATED    33   1   0   4
  20Q LOSS WILD-TYPE 297   7   4  14
D77V13, multiclass
    clus
vv   20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  R0               33                297
  R1                1                  7
  R2                0                  4
  RX                4                 14

Clustering(78) Variable = 21Q LOSS MUTATION ANALYSIS
D78V1, survival
                    sevent
clus2                  0   1
  21Q LOSS MUTATED   132  70
  21Q LOSS WILD-TYPE 107  68
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
               202                175 
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
                70                 68 
$`21Q LOSS MUTATED`
TCGA-18-3408 TCGA-18-3411 TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 
       81.07        46.52        11.34        13.02        59.51        28.34 
TCGA-18-3417 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-21-1070 TCGA-21-1072 
       24.92         6.15         2.79        90.51       119.54        99.16 
TCGA-21-1075 TCGA-21-1076 TCGA-21-1079 TCGA-21-1083 TCGA-21-5786 TCGA-21-5787 
       70.13        60.89        31.69         8.78        33.93        10.82 
TCGA-22-0944 TCGA-22-1002 TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 
        7.33         4.31        14.10        27.02        48.82        20.45 
TCGA-22-4593 TCGA-22-4594 TCGA-22-4599 TCGA-22-4604 TCGA-22-4613 TCGA-22-5471 
       35.08        48.33        38.17        13.12        11.77        31.73 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 
       63.52        14.60        44.22         0.79        54.28        71.34 
TCGA-22-5482 TCGA-22-5483 TCGA-22-5491 TCGA-33-4532 TCGA-33-4538 TCGA-33-4547 
       11.74        18.84        56.32         7.63        97.94        43.10 
TCGA-33-4582 TCGA-33-4586 TCGA-33-4589 TCGA-34-2604 TCGA-34-2608 TCGA-34-5231 
      103.53        14.07        10.98        31.50        32.84        50.24 
TCGA-34-5236 TCGA-34-5241 TCGA-34-5927 TCGA-34-7107 TCGA-37-3789 TCGA-37-3792 
        9.04        14.07        30.94         1.08         0.43         0.39 
TCGA-37-4130 TCGA-37-4133 TCGA-37-4135 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 
        8.09         7.82         6.81         3.39        74.07        44.71 
TCGA-39-5027 TCGA-39-5029 TCGA-39-5031 TCGA-39-5034 TCGA-39-5036 TCGA-39-5037 
       60.76        24.33        27.35        36.39        35.64        35.70 
TCGA-39-5039 TCGA-43-2576 TCGA-43-2578 TCGA-43-3920 TCGA-43-5668 TCGA-43-6771 
       17.88        40.21        22.49        33.07        11.47         5.42 
TCGA-43-7656 TCGA-43-8116 TCGA-43-8118 TCGA-43-A56V TCGA-46-3768 TCGA-46-6025 
        6.97         6.35         2.93         5.06         9.96        10.65 
TCGA-46-6026 TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 TCGA-52-7810 
       13.87         0.39        29.95        17.79         5.42        30.31 
TCGA-56-1622 TCGA-56-5897 TCGA-56-5898 TCGA-56-6545 TCGA-56-6546 TCGA-56-7222 
       28.93         0.10        18.25         2.04         1.02         0.43 
TCGA-56-7223 TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 TCGA-56-7730 TCGA-56-7822 
        0.99         1.45         1.32         0.85         0.20         0.03 
TCGA-56-8503 TCGA-56-8629 TCGA-56-A49D TCGA-56-A4BX TCGA-56-A4ZJ TCGA-58-8386 
        1.35         1.12         0.99         1.51         1.02         0.03 
TCGA-58-8387 TCGA-58-8388 TCGA-58-8390 TCGA-58-8392 TCGA-58-A46K TCGA-60-2698 
       13.25        12.43        29.95        16.47        34.36        10.22 
TCGA-60-2703 TCGA-60-2707 TCGA-60-2708 TCGA-60-2711 TCGA-60-2712 TCGA-60-2715 
       96.82        21.70        80.42        41.39         9.01        35.34 
TCGA-60-2719 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2725 TCGA-60-2726 
       42.61        32.28        29.85        35.90        26.79        11.77 
TCGA-66-2734 TCGA-66-2742 TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 TCGA-66-2757 
       43.10        21.07         1.02         2.01         0.92         0.99 
TCGA-66-2758 TCGA-66-2759 TCGA-66-2765 TCGA-66-2766 TCGA-66-2771 TCGA-66-2777 
       20.98        25.02         2.01         1.02        19.00         2.01 
TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 
       12.03         3.98        12.00         1.94        25.97        40.01 
TCGA-66-2788 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2795 TCGA-66-2800 
       22.98         5.03        30.02        10.06         4.01        49.05 
TCGA-68-7755 TCGA-68-7756 TCGA-68-8250 TCGA-68-8251 TCGA-77-6842 TCGA-77-7141 
        2.73         6.64         8.02         3.12        29.56         0.49 
TCGA-77-7335 TCGA-77-7463 TCGA-77-7465 TCGA-77-8008 TCGA-77-8009 TCGA-77-8136 
       70.09        46.78        15.75        86.76        53.95        39.09 
TCGA-77-8145 TCGA-77-8148 TCGA-77-8150 TCGA-77-8153 TCGA-77-8154 TCGA-77-8156 
        6.97         9.63        54.41        55.33        35.90         0.33 
TCGA-77-A5G3 TCGA-77-A5GH TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 TCGA-85-7698 
      117.57        23.44         0.79         1.12         0.59         1.61 
TCGA-85-7843 TCGA-85-8048 TCGA-85-8049 TCGA-85-8070 TCGA-85-8071 TCGA-85-8276 
        1.15         0.85         1.97        16.77        14.07         0.43 
TCGA-85-8287 TCGA-85-8350 TCGA-85-8351 TCGA-85-8352 TCGA-85-8354 TCGA-85-8355 
        1.45         1.97         1.81         2.20         2.01         0.66 
TCGA-85-8481 TCGA-85-8664 TCGA-85-8666 TCGA-85-A4CL TCGA-85-A4QR TCGA-85-A53L 
        0.66         0.10        15.58         0.46         0.82         0.43 
TCGA-90-7766 TCGA-90-7769 TCGA-90-A4ED TCGA-90-A4EE TCGA-92-7341 TCGA-92-8064 
        9.50        11.77         8.02        10.88         3.48         5.26 
TCGA-94-7557 TCGA-94-7943 TCGA-96-A4JK TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 
        0.16        11.70         8.98        13.58         7.33        10.13 
TCGA-L3-A4E7 TCGA-LA-A446 TCGA-MF-A522 TCGA-NC-A5HE 
        1.15         1.18         3.02        56.61 

$`21Q LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3409 TCGA-18-3410 TCGA-18-3419 TCGA-18-3421 
       12.16         4.47        79.46         4.80         1.61        43.76 
TCGA-18-5592 TCGA-18-5595 TCGA-21-1071 TCGA-21-1077 TCGA-21-1078 TCGA-21-1080 
        3.02        27.16        46.88        34.78        15.55       122.43 
TCGA-21-1081 TCGA-21-1082 TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 TCGA-21-A5DI 
        9.30       119.80        31.63        88.08        41.69        32.19 
TCGA-22-0940 TCGA-22-1000 TCGA-22-1005 TCGA-22-1011 TCGA-22-4595 TCGA-22-4596 
       19.99        14.93        64.21         1.74        24.13         0.56 
TCGA-22-4601 TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 TCGA-22-5472 TCGA-22-5481 
       34.75        32.02        19.30         9.53        64.90        79.20 
TCGA-22-5485 TCGA-22-5489 TCGA-22-5492 TCGA-22-A5C4 TCGA-33-4533 TCGA-33-4566 
       30.08        62.86        16.60         0.95       114.05       173.79 
TCGA-33-4583 TCGA-33-4587 TCGA-33-6737 TCGA-33-6738 TCGA-34-2596 TCGA-34-2600 
      141.34        54.44        19.76        26.99         2.63        61.61 
TCGA-34-2605 TCGA-34-2609 TCGA-34-5232 TCGA-34-5234 TCGA-34-5239 TCGA-34-5240 
       28.96        31.23        67.79        56.38        23.24        12.00 
TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-4129 TCGA-37-4132 TCGA-37-4141 
       18.12         4.96         3.95         6.54         7.46         0.39 
TCGA-39-5011 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5028 TCGA-39-5030 
       47.80        68.58        55.17        70.03         1.71         1.94 
TCGA-39-5035 TCGA-39-5040 TCGA-43-2581 TCGA-43-3394 TCGA-43-5670 TCGA-43-6143 
       15.58        17.06        38.66        27.02        18.05        12.36 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6773 TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 
       24.89        10.19         3.78         1.58        66.51         6.64 
TCGA-43-A474 TCGA-43-A475 TCGA-51-4079 TCGA-52-7811 TCGA-52-7812 TCGA-56-7221 
       11.61         9.73         0.39         8.75        27.45         0.99 
TCGA-56-8504 TCGA-56-8622 TCGA-56-8624 TCGA-56-8625 TCGA-56-8626 TCGA-56-8628 
        5.82         1.78         1.18         2.07         0.56         0.53 
TCGA-56-A4BY TCGA-56-A4ZK TCGA-56-A5DS TCGA-58-8391 TCGA-58-8393 TCGA-58-A46J 
        0.99         0.13         0.26        71.24        34.78        64.87 
TCGA-58-A46L TCGA-58-A46M TCGA-58-A46N TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 
       36.59        23.24        17.72        21.07         3.58        12.23 
TCGA-60-2704 TCGA-60-2706 TCGA-60-2709 TCGA-60-2710 TCGA-60-2713 TCGA-60-2714 
       37.94        92.71        49.48        66.51        56.91        50.33 
TCGA-60-2716 TCGA-60-2720 TCGA-60-2724 TCGA-66-2727 TCGA-66-2737 TCGA-66-2744 
       48.49         3.16        23.57        16.96         2.01         0.99 
TCGA-66-2756 TCGA-66-2763 TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 TCGA-66-2770 
        0.99         0.99         2.01         2.01         7.07        23.01 
TCGA-66-2773 TCGA-66-2778 TCGA-66-2783 TCGA-66-2789 TCGA-66-2790 TCGA-66-2794 
        3.02        19.00        24.95         4.04        22.98        54.08 
TCGA-68-7757 TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 
        6.94        73.08        75.09        23.28        11.18        89.95 
TCGA-77-7140 TCGA-77-7142 TCGA-77-7337 TCGA-77-7338 TCGA-77-8007 TCGA-77-8128 
       20.78        42.25       106.95         0.16         6.51        37.81 
TCGA-77-8130 TCGA-77-8131 TCGA-77-8133 TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 
       82.92        12.59        53.92        17.69       104.09        11.54 
TCGA-77-8143 TCGA-77-8144 TCGA-77-A5FZ TCGA-77-A5GB TCGA-85-6560 TCGA-85-7697 
       26.40        27.39       126.18        30.81         0.36         0.33 
TCGA-85-7699 TCGA-85-7844 TCGA-85-7950 TCGA-85-8052 TCGA-85-8072 TCGA-85-8277 
        0.03         1.25         1.97         0.53         1.18         0.36 
TCGA-85-8288 TCGA-85-8353 TCGA-85-8479 TCGA-85-8580 TCGA-85-8582 TCGA-85-A50M 
        1.78         1.78         0.72        14.60        13.91         0.62 
TCGA-85-A513 TCGA-90-6837 TCGA-90-7767 TCGA-90-7964 TCGA-92-7340 TCGA-92-8063 
        0.79        24.89         2.93        14.07         2.70         4.01 
TCGA-92-8065 TCGA-94-7033 TCGA-96-7544 TCGA-96-7545 TCGA-96-8169 TCGA-96-8170 
        2.27         2.86        39.88        44.15         6.18         6.90 
TCGA-96-A4JL TCGA-98-7454 TCGA-98-8020 TCGA-J1-A4AH TCGA-L3-A524 TCGA-NC-A5HG 
        6.02         8.42         2.73         7.30        14.76        50.86 
TCGA-NC-A5HI 
       37.32 

  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
              0.03               0.03 
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
            119.54             173.79 
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
             11.77              16.60 
[1] "0.0 - 119.5 (11.8)" "0.0 - 173.8 (16.6)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-22-A5C4         TCGA-33-4532         TCGA-33-4533 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-33-4538         TCGA-33-4547         TCGA-33-4566 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-33-4582         TCGA-33-4583         TCGA-33-4586 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-33-4587         TCGA-33-4589         TCGA-33-6737 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-33-6738         TCGA-34-2596         TCGA-34-2600 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-34-2604         TCGA-34-2605         TCGA-34-2608 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-34-2609         TCGA-34-5231         TCGA-34-5232 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-34-5234         TCGA-34-5236         TCGA-34-5239 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-34-5240         TCGA-34-5241         TCGA-34-5927 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-34-5928         TCGA-34-5929         TCGA-34-7107 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-3792 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4132 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-37-4133         TCGA-37-4135         TCGA-37-4141 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-37-5819         TCGA-39-5011         TCGA-39-5016 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-39-5019         TCGA-39-5021         TCGA-39-5022 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-39-5024         TCGA-39-5027         TCGA-39-5028 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-39-5029         TCGA-39-5030         TCGA-39-5031 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-39-5034         TCGA-39-5035         TCGA-39-5036 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-39-5037         TCGA-39-5039         TCGA-39-5040 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-43-8118 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-43-A474         TCGA-43-A475         TCGA-43-A56V 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-46-3768         TCGA-46-6025         TCGA-46-6026 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-51-4079         TCGA-51-4080         TCGA-51-4081 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-52-7622         TCGA-52-7809         TCGA-52-7810 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-52-7811         TCGA-52-7812         TCGA-56-1622 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-56-5897         TCGA-56-5898         TCGA-56-6545 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-56-6546         TCGA-56-7221         TCGA-56-7222 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-56-7223         TCGA-56-7579         TCGA-56-7580 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-56-7582         TCGA-56-7730         TCGA-56-7822 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-56-8503         TCGA-56-8504         TCGA-56-8622 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-56-8624         TCGA-56-8625         TCGA-56-8626 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-56-8628         TCGA-56-8629         TCGA-56-A49D 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-56-A4BX         TCGA-56-A4BY         TCGA-56-A4ZJ 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-56-A4ZK         TCGA-56-A5DS         TCGA-58-8386 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-58-8387         TCGA-58-8388         TCGA-58-8390 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-58-8391         TCGA-58-8392         TCGA-58-8393 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-58-A46J         TCGA-58-A46K         TCGA-58-A46L 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-58-A46M         TCGA-58-A46N         TCGA-60-2695 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-60-2696         TCGA-60-2697         TCGA-60-2698 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-60-2703         TCGA-60-2704         TCGA-60-2706 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2756 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-66-2770         TCGA-66-2771         TCGA-66-2773 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-66-2785         TCGA-66-2786         TCGA-66-2787 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
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  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-96-8169         TCGA-96-8170         TCGA-96-A4JK 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-96-A4JL         TCGA-98-7454         TCGA-98-8020 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-LA-A446         TCGA-MF-A522         TCGA-NC-A5HE 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-22-A5C4         TCGA-33-4532         TCGA-33-4533 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-33-4538         TCGA-33-4547         TCGA-33-4566 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-33-4582         TCGA-33-4583         TCGA-33-4586 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-33-4587         TCGA-33-4589         TCGA-33-6737 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-33-6738         TCGA-34-2596         TCGA-34-2600 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-34-2604         TCGA-34-2605         TCGA-34-2608 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-34-2609         TCGA-34-5231         TCGA-34-5232 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-34-5234         TCGA-34-5236         TCGA-34-5239 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-34-5240         TCGA-34-5241         TCGA-34-5927 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-34-5928         TCGA-34-5929         TCGA-34-7107 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-3792 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4132 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-37-4133         TCGA-37-4135         TCGA-37-4141 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-37-5819         TCGA-39-5011         TCGA-39-5016 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-39-5019         TCGA-39-5021         TCGA-39-5022 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-39-5024         TCGA-39-5027         TCGA-39-5028 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-39-5029         TCGA-39-5030         TCGA-39-5031 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-39-5034         TCGA-39-5035         TCGA-39-5036 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-39-5037         TCGA-39-5039         TCGA-39-5040 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-43-5670         TCGA-43-6143         TCGA-43-6647 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-6773 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-43-7656         TCGA-43-7657         TCGA-43-7658 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-43-8115         TCGA-43-8116         TCGA-43-8118 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-43-A474         TCGA-43-A475         TCGA-43-A56V 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-46-3768         TCGA-46-6025         TCGA-46-6026 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-51-4079         TCGA-51-4080         TCGA-51-4081 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-52-7622         TCGA-52-7809         TCGA-52-7810 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-52-7811         TCGA-52-7812         TCGA-56-1622 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-56-5897         TCGA-56-5898         TCGA-56-6545 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-56-6546         TCGA-56-7221         TCGA-56-7222 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-56-7223         TCGA-56-7579         TCGA-56-7580 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-56-7582         TCGA-56-7730         TCGA-56-7822 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-56-8503         TCGA-56-8504         TCGA-56-8622 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-56-8624         TCGA-56-8625         TCGA-56-8626 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-56-8628         TCGA-56-8629         TCGA-56-A49D 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-56-A4BX         TCGA-56-A4BY         TCGA-56-A4ZJ 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-56-A4ZK         TCGA-56-A5DS         TCGA-58-8386 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-58-8387         TCGA-58-8388         TCGA-58-8390 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-58-8391         TCGA-58-8392         TCGA-58-8393 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-58-A46J         TCGA-58-A46K         TCGA-58-A46L 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-58-A46M         TCGA-58-A46N         TCGA-60-2695 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-60-2696         TCGA-60-2697         TCGA-60-2698 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-60-2703         TCGA-60-2704         TCGA-60-2706 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2756 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-66-2770         TCGA-66-2771         TCGA-66-2773 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-66-2785         TCGA-66-2786         TCGA-66-2787 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-68-7755         TCGA-68-7756         TCGA-68-7757 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-68-8250         TCGA-68-8251         TCGA-77-6842 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-77-6843         TCGA-77-6844         TCGA-77-6845 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-77-7138         TCGA-77-7139         TCGA-77-7140 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-77-7141         TCGA-77-7142         TCGA-77-7335 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-77-7337         TCGA-77-7338         TCGA-77-7463 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-77-7465         TCGA-77-8007         TCGA-77-8008 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-77-8009         TCGA-77-8128         TCGA-77-8130 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-77-8131         TCGA-77-8133         TCGA-77-8136 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-77-8138         TCGA-77-8139         TCGA-77-8140 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-77-8143         TCGA-77-8144         TCGA-77-8145 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-77-8148         TCGA-77-8150         TCGA-77-8153 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-77-8154         TCGA-77-8156         TCGA-77-A5FZ 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-77-A5G3         TCGA-77-A5GB         TCGA-77-A5GH 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-96-8169         TCGA-96-8170         TCGA-96-A4JK 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-96-A4JL         TCGA-98-7454         TCGA-98-8020 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-LA-A446         TCGA-MF-A522         TCGA-NC-A5HE 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D78V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  21Q LOSS MUTATED         0       40       73        1        29        33
  21Q LOSS WILD-TYPE       1       28       60        0        21        38
                    vv
clus                 STAGE IIIA STAGE IIIB STAGE IV
  21Q LOSS MUTATED           26         10        4
  21Q LOSS WILD-TYPE         28         10        1
D78V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  21Q LOSS MUTATED    51 134  22  10
  21Q LOSS WILD-TYPE  42 116  22   9
D78V4, multiclass
    clus
vv   21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  T1               51                 42
  T2              134                116
  T3               22                 22
  T4               10                  9
                    vv
clus                  N0  N1  N2  N3
  21Q LOSS MUTATED   139  59  16   1
  21Q LOSS WILD-TYPE 114  50  18   4
D78V5, multiclass
    clus
vv   21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  N0              139                114
  N1               59                 50
  N2               16                 18
  N3                1                  4
                    vv
clus                  M0  M1  MX
  21Q LOSS MUTATED   191   4  19
  21Q LOSS WILD-TYPE 157   1  28
D78V6, multiclass
    clus
vv   21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  M0              191                157
  M1                4                  1
  MX               19                 28
D78V7, binary
                    cls
clus                   0   1
  21Q LOSS MUTATED    39 178
  21Q LOSS WILD-TYPE  62 127
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  21Q LOSS MUTATED     39  178
  21Q LOSS WILD-TYPE   62  127
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  FEMALE               39                 62
  MALE                178                127
D78V8, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  21Q LOSS MUTATED                                       5
  21Q LOSS WILD-TYPE                                     7
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  21Q LOSS MUTATED                                        2
  21Q LOSS WILD-TYPE                                      4
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  21Q LOSS MUTATED                                         0
  21Q LOSS WILD-TYPE                                       1
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  21Q LOSS MUTATED                                                           210
  21Q LOSS WILD-TYPE                                                         177
D78V9, multiclass
                                                             clus
vv                                                            21Q LOSS MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      5
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                     2
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                    0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              210
                                                             clus
vv                                                            21Q LOSS WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                        7
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                       4
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                      1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                177
D78V10, binary
                    cls
clus                   0   1
  21Q LOSS MUTATED     6 211
  21Q LOSS WILD-TYPE   6 183
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  21Q LOSS MUTATED      6  211
  21Q LOSS WILD-TYPE    6  183
     clus
vv    21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  NO                 6                  6
  YES              211                183
D78V11, continuous
D78V12, continuous
                    vv
clus                  R0  R1  R2  RX
  21Q LOSS MUTATED   180   3   2   7
  21Q LOSS WILD-TYPE 150   5   2  11
D78V13, multiclass
    clus
vv   21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  R0              180                150
  R1                3                  5
  R2                2                  2
  RX                7                 11

Clustering(79) Variable = 22Q LOSS MUTATION ANALYSIS
D79V1, survival
                    sevent
clus2                  0   1
  22Q LOSS MUTATED    42  27
  22Q LOSS WILD-TYPE 197 111
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
                69                308 
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
                27                111 
$`22Q LOSS MUTATED`
TCGA-18-3407 TCGA-18-3417 TCGA-18-4083 TCGA-21-1070 TCGA-21-1071 TCGA-21-1080 
        4.47        24.92         6.15       119.54        46.88       122.43 
TCGA-21-5783 TCGA-21-5787 TCGA-21-A5DI TCGA-22-0940 TCGA-22-1016 TCGA-22-4594 
       88.08        10.82        32.19        19.99        27.02        48.33 
TCGA-22-5480 TCGA-22-5483 TCGA-33-4582 TCGA-33-4583 TCGA-33-4587 TCGA-33-6737 
       71.34        18.84       103.53       141.34        54.44        19.76 
TCGA-34-5928 TCGA-37-3792 TCGA-37-4129 TCGA-37-4132 TCGA-37-5819 TCGA-39-5011 
       18.12         0.39         6.54         7.46         3.39        47.80 
TCGA-39-5016 TCGA-39-5029 TCGA-39-5040 TCGA-43-2578 TCGA-43-2581 TCGA-43-6771 
       74.07        24.33        17.06        22.49        38.66         5.42 
TCGA-43-7658 TCGA-52-7812 TCGA-56-6546 TCGA-56-7222 TCGA-60-2695 TCGA-66-2727 
       66.51        27.45         1.02         0.43        21.07        16.96 
TCGA-66-2753 TCGA-66-2754 TCGA-66-2757 TCGA-66-2759 TCGA-66-2766 TCGA-66-2771 
        1.02         2.01         0.99        25.02         1.02        19.00 
TCGA-66-2778 TCGA-66-2782 TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 TCGA-66-2793 
       19.00        12.00         4.04        22.98         5.03        10.06 
TCGA-68-8250 TCGA-77-7138 TCGA-77-7337 TCGA-77-7465 TCGA-77-8139 TCGA-77-8150 
        8.02        11.18       106.95        15.75       104.09        54.41 
TCGA-85-6560 TCGA-85-7697 TCGA-85-8048 TCGA-85-8049 TCGA-85-8072 TCGA-85-8664 
        0.36         0.33         0.85         1.97         1.18         0.10 
TCGA-85-8666 TCGA-85-A53L TCGA-90-A4ED TCGA-90-A4EE TCGA-92-8063 TCGA-92-8065 
       15.58         0.43         8.02        10.88         4.01         2.27 
TCGA-98-7454 TCGA-MF-A522 TCGA-NC-A5HE 
        8.42         3.02        56.61 

$`22Q LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
       12.16        81.07        79.46         4.80        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3419 TCGA-18-3421 TCGA-18-4086 
       13.02        59.51        28.34         1.61        43.76         2.79 
TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 
       90.51         3.02        27.16        99.16        70.13        60.89 
TCGA-21-1077 TCGA-21-1078 TCGA-21-1079 TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 
       34.78        15.55        31.69         9.30       119.80         8.78 
TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 
       31.63        41.69        33.93         7.33        14.93         4.31 
TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-1017 TCGA-22-4591 TCGA-22-4593 
       64.21         1.74        14.10        48.82        20.45        35.08 
TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4605 
       24.13         0.56        38.17        34.75        13.12        32.02 
TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       19.30         9.53        11.77        31.73        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 TCGA-22-5481 TCGA-22-5482 
       14.60        44.22         0.79        54.28        79.20        11.74 
TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-22-A5C4 TCGA-33-4532 
       30.08        62.86        56.32        16.60         0.95         7.63 
TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4586 TCGA-33-4589 
      114.05        97.94        43.10       173.79        14.07        10.98 
TCGA-33-6738 TCGA-34-2596 TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 
       26.99         2.63        61.61        31.50        28.96        32.84 
TCGA-34-2609 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 
       31.23        50.24        67.79        56.38         9.04        23.24 
TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 
       12.00        14.07        30.94         4.96         1.08         3.95 
TCGA-37-3789 TCGA-37-4130 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-39-5019 
        0.43         8.09         7.82         6.81         0.39        44.71 
TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5030 
       68.58        55.17        70.03        60.76         1.71         1.94 
TCGA-39-5031 TCGA-39-5034 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 
       27.35        36.39        15.58        35.64        35.70        17.88 
TCGA-43-2576 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-5670 TCGA-43-6143 
       40.21        27.02        33.07        11.47        18.05        12.36 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 TCGA-43-8115 
       24.89        10.19         3.78         6.97         1.58         6.64 
TCGA-43-8116 TCGA-43-8118 TCGA-43-A474 TCGA-43-A475 TCGA-43-A56V TCGA-46-3768 
        6.35         2.93        11.61         9.73         5.06         9.96 
TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 
       10.65        13.87         0.39         0.39        29.95        17.79 
TCGA-52-7809 TCGA-52-7810 TCGA-52-7811 TCGA-56-1622 TCGA-56-5897 TCGA-56-5898 
        5.42        30.31         8.75        28.93         0.10        18.25 
TCGA-56-6545 TCGA-56-7221 TCGA-56-7223 TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 
        2.04         0.99         0.99         1.45         1.32         0.85 
TCGA-56-7730 TCGA-56-7822 TCGA-56-8503 TCGA-56-8504 TCGA-56-8622 TCGA-56-8624 
        0.20         0.03         1.35         5.82         1.78         1.18 
TCGA-56-8625 TCGA-56-8626 TCGA-56-8628 TCGA-56-8629 TCGA-56-A49D TCGA-56-A4BX 
        2.07         0.56         0.53         1.12         0.99         1.51 
TCGA-56-A4BY TCGA-56-A4ZJ TCGA-56-A4ZK TCGA-56-A5DS TCGA-58-8386 TCGA-58-8387 
        0.99         1.02         0.13         0.26         0.03        13.25 
TCGA-58-8388 TCGA-58-8390 TCGA-58-8391 TCGA-58-8392 TCGA-58-8393 TCGA-58-A46J 
       12.43        29.95        71.24        16.47        34.78        64.87 
TCGA-58-A46K TCGA-58-A46L TCGA-58-A46M TCGA-58-A46N TCGA-60-2696 TCGA-60-2697 
       34.36        36.59        23.24        17.72         3.58        12.23 
TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 
       10.22        96.82        37.94        92.71        21.70        80.42 
TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 
       49.48        66.51        41.39         9.01        56.91        50.33 
TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 
       35.34        48.49        42.61         3.16        32.28        29.85 
TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2734 TCGA-66-2737 
       35.90        23.57        26.79        11.77        43.10         2.01 
TCGA-66-2742 TCGA-66-2744 TCGA-66-2755 TCGA-66-2756 TCGA-66-2758 TCGA-66-2763 
       21.07         0.99         0.92         0.99        20.98         0.99 
TCGA-66-2765 TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 TCGA-66-2770 TCGA-66-2773 
        2.01         2.01         2.01         7.07        23.01         3.02 
TCGA-66-2777 TCGA-66-2780 TCGA-66-2781 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 
        2.01        12.03         3.98        24.95         1.94        25.97 
TCGA-66-2787 TCGA-66-2788 TCGA-66-2792 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 
       40.01        22.98        30.02        54.08         4.01        49.05 
TCGA-68-7755 TCGA-68-7756 TCGA-68-7757 TCGA-68-8251 TCGA-77-6842 TCGA-77-6843 
        2.73         6.64         6.94         3.12        29.56        73.08 
TCGA-77-6844 TCGA-77-6845 TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 
       75.09        23.28        89.95        20.78         0.49        42.25 
TCGA-77-7335 TCGA-77-7338 TCGA-77-7463 TCGA-77-8007 TCGA-77-8008 TCGA-77-8009 
       70.09         0.16        46.78         6.51        86.76        53.95 
TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 TCGA-77-8133 TCGA-77-8136 TCGA-77-8138 
       37.81        82.92        12.59        53.92        39.09        17.69 
TCGA-77-8140 TCGA-77-8143 TCGA-77-8144 TCGA-77-8145 TCGA-77-8148 TCGA-77-8153 
       11.54        26.40        27.39         6.97         9.63        55.33 
TCGA-77-8154 TCGA-77-8156 TCGA-77-A5FZ TCGA-77-A5G3 TCGA-77-A5GB TCGA-77-A5GH 
       35.90         0.33       126.18       117.57        30.81        23.44 
TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 TCGA-85-7698 TCGA-85-7699 TCGA-85-7843 
        0.79         1.12         0.59         1.61         0.03         1.15 
TCGA-85-7844 TCGA-85-7950 TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 TCGA-85-8276 
        1.25         1.97         0.53        16.77        14.07         0.43 
TCGA-85-8277 TCGA-85-8287 TCGA-85-8288 TCGA-85-8350 TCGA-85-8351 TCGA-85-8352 
        0.36         1.45         1.78         1.97         1.81         2.20 
TCGA-85-8353 TCGA-85-8354 TCGA-85-8355 TCGA-85-8479 TCGA-85-8481 TCGA-85-8580 
        1.78         2.01         0.66         0.72         0.66        14.60 
TCGA-85-8582 TCGA-85-A4CL TCGA-85-A4QR TCGA-85-A50M TCGA-85-A513 TCGA-90-6837 
       13.91         0.46         0.82         0.62         0.79        24.89 
TCGA-90-7766 TCGA-90-7767 TCGA-90-7769 TCGA-90-7964 TCGA-92-7340 TCGA-92-7341 
        9.50         2.93        11.77        14.07         2.70         3.48 
TCGA-92-8064 TCGA-94-7033 TCGA-94-7557 TCGA-94-7943 TCGA-96-7544 TCGA-96-7545 
        5.26         2.86         0.16        11.70        39.88        44.15 
TCGA-96-8169 TCGA-96-8170 TCGA-96-A4JK TCGA-96-A4JL TCGA-98-8020 TCGA-98-8021 
        6.18         6.90         8.98         6.02         2.73        13.58 
TCGA-98-8022 TCGA-98-8023 TCGA-J1-A4AH TCGA-L3-A4E7 TCGA-L3-A524 TCGA-LA-A446 
        7.33        10.13         7.30         1.15        14.76         1.18 
TCGA-NC-A5HG TCGA-NC-A5HI 
       50.86        37.32 

  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
              0.10               0.03 
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
            141.34             173.79 
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
            15.750             13.185 
[1] "0.1 - 141.3 (15.8)" "0.0 - 173.8 (13.2)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-22-A5C4         TCGA-33-4532         TCGA-33-4533 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-33-4538         TCGA-33-4547         TCGA-33-4566 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-33-4582         TCGA-33-4583         TCGA-33-4586 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-33-4587         TCGA-33-4589         TCGA-33-6737 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-33-6738         TCGA-34-2596         TCGA-34-2600 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-34-2604         TCGA-34-2605         TCGA-34-2608 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-34-2609         TCGA-34-5231         TCGA-34-5232 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-34-5234         TCGA-34-5236         TCGA-34-5239 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-34-5240         TCGA-34-5241         TCGA-34-5927 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-34-5928         TCGA-34-5929         TCGA-34-7107 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-3792 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4132 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-37-4133         TCGA-37-4135         TCGA-37-4141 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-37-5819         TCGA-39-5011         TCGA-39-5016 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-39-5019         TCGA-39-5021         TCGA-39-5022 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-39-5024         TCGA-39-5027         TCGA-39-5028 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-39-5029         TCGA-39-5030         TCGA-39-5031 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-39-5034         TCGA-39-5035         TCGA-39-5036 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-39-5037         TCGA-39-5039         TCGA-39-5040 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-43-2576         TCGA-43-2578         TCGA-43-2581 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
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"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-68-7755         TCGA-68-7756         TCGA-68-7757 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-68-8250         TCGA-68-8251         TCGA-77-6842 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-77-6843         TCGA-77-6844         TCGA-77-6845 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-77-7138         TCGA-77-7139         TCGA-77-7140 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-77-7141         TCGA-77-7142         TCGA-77-7335 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-77-7337         TCGA-77-7338         TCGA-77-7463 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-77-7465         TCGA-77-8007         TCGA-77-8008 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-77-8009         TCGA-77-8128         TCGA-77-8130 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-77-8131         TCGA-77-8133         TCGA-77-8136 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-77-8138         TCGA-77-8139         TCGA-77-8140 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-77-8143         TCGA-77-8144         TCGA-77-8145 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-77-8148         TCGA-77-8150         TCGA-77-8153 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-77-8154         TCGA-77-8156         TCGA-77-A5FZ 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-77-A5G3         TCGA-77-A5GB         TCGA-77-A5GH 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-96-8169         TCGA-96-8170         TCGA-96-A4JK 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-96-A4JL         TCGA-98-7454         TCGA-98-8020 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-98-8021         TCGA-98-8022         TCGA-98-8023 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-J1-A4AH         TCGA-L3-A4E7         TCGA-L3-A524 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-LA-A446         TCGA-MF-A522         TCGA-NC-A5HE 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-NC-A5HG         TCGA-NC-A5HI 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D79V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  22Q LOSS MUTATED         1       10       18        0        12        12
  22Q LOSS WILD-TYPE       0       58      115        1        38        59
                    vv
clus                 STAGE IIIA STAGE IIIB STAGE IV
  22Q LOSS MUTATED           14          4        2
  22Q LOSS WILD-TYPE         40         16        3
D79V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  22Q LOSS MUTATED    16  47   9   2
  22Q LOSS WILD-TYPE  77 203  35  17
D79V4, multiclass
    clus
vv   22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  T1               16                 77
  T2               47                203
  T3                9                 35
  T4                2                 17
                    vv
clus                  N0  N1  N2  N3
  22Q LOSS MUTATED    41  19  11   3
  22Q LOSS WILD-TYPE 212  90  23   2
D79V5, multiclass
    clus
vv   22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  N0               41                212
  N1               19                 90
  N2               11                 23
  N3                3                  2
                    vv
clus                  M0  M1  MX
  22Q LOSS MUTATED    62   2   9
  22Q LOSS WILD-TYPE 286   3  38
D79V6, multiclass
    clus
vv   22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  M0               62                286
  M1                2                  3
  MX                9                 38
D79V7, binary
                    cls
clus                   0   1
  22Q LOSS MUTATED    17  57
  22Q LOSS WILD-TYPE  84 248
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  22Q LOSS MUTATED     17   57
  22Q LOSS WILD-TYPE   84  248
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  FEMALE               17                 84
  MALE                 57                248
D79V8, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  22Q LOSS MUTATED                                       2
  22Q LOSS WILD-TYPE                                    10
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  22Q LOSS MUTATED                                        2
  22Q LOSS WILD-TYPE                                      4
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  22Q LOSS MUTATED                                         1
  22Q LOSS WILD-TYPE                                       0
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  22Q LOSS MUTATED                                                            69
  22Q LOSS WILD-TYPE                                                         318
D79V9, multiclass
                                                             clus
vv                                                            22Q LOSS MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      2
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                     2
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               69
                                                             clus
vv                                                            22Q LOSS WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       10
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                       4
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                      0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                318
D79V10, binary
                    cls
clus                   0   1
  22Q LOSS MUTATED     3  71
  22Q LOSS WILD-TYPE   9 323
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  22Q LOSS MUTATED      3   71
  22Q LOSS WILD-TYPE    9  323
     clus
vv    22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  NO                 3                  9
  YES               71                323
D79V11, continuous
D79V12, continuous
                    vv
clus                  R0  R1  R2  RX
  22Q LOSS MUTATED    58   2   1   4
  22Q LOSS WILD-TYPE 272   6   3  14
D79V13, multiclass
    clus
vv   22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  R0               58                272
  R1                2                  6
  R2                1                  3
  RX                4                 14

Clustering(80) Variable = XQ LOSS MUTATION ANALYSIS
D80V1, survival
                   sevent
clus2                 0   1
  XQ LOSS MUTATED    48  33
  XQ LOSS WILD-TYPE 191 105
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
               81               296 
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
               33               105 
$`XQ LOSS MUTATED`
TCGA-18-3408 TCGA-18-3416 TCGA-18-4086 TCGA-18-5592 TCGA-18-5595 TCGA-21-1072 
       81.07        28.34         2.79         3.02        27.16        99.16 
TCGA-21-1080 TCGA-21-1082 TCGA-21-1083 TCGA-22-0940 TCGA-22-4591 TCGA-22-4607 
      122.43       119.80         8.78        19.99        20.45        19.30 
TCGA-22-4613 TCGA-22-5473 TCGA-22-5477 TCGA-22-5481 TCGA-22-5485 TCGA-22-5491 
       11.77        63.52        44.22        79.20        30.08        56.32 
TCGA-22-A5C4 TCGA-33-4582 TCGA-33-4587 TCGA-34-2600 TCGA-34-2605 TCGA-34-5929 
        0.95       103.53        54.44        61.61        28.96         4.96 
TCGA-37-4135 TCGA-37-4141 TCGA-39-5027 TCGA-39-5028 TCGA-39-5037 TCGA-43-5668 
        6.81         0.39        60.76         1.71        35.70        11.47 
TCGA-43-7656 TCGA-43-8116 TCGA-46-6025 TCGA-51-4080 TCGA-52-7810 TCGA-56-7221 
        6.97         6.35        10.65         0.39        30.31         0.99 
TCGA-56-7222 TCGA-56-8625 TCGA-58-8388 TCGA-58-8390 TCGA-58-8391 TCGA-58-8392 
        0.43         2.07        12.43        29.95        71.24        16.47 
TCGA-60-2696 TCGA-60-2712 TCGA-60-2713 TCGA-60-2721 TCGA-60-2726 TCGA-66-2727 
        3.58         9.01        56.91        32.28        11.77        16.96 
TCGA-66-2757 TCGA-66-2763 TCGA-66-2773 TCGA-66-2780 TCGA-66-2782 TCGA-66-2786 
        0.99         0.99         3.02        12.03        12.00        25.97 
TCGA-66-2789 TCGA-66-2790 TCGA-66-2795 TCGA-68-7755 TCGA-68-7756 TCGA-77-6845 
        4.04        22.98         4.01         2.73         6.64        23.28 
TCGA-77-7142 TCGA-77-8136 TCGA-77-8140 TCGA-77-8144 TCGA-77-8153 TCGA-77-8154 
       42.25        39.09        11.54        27.39        55.33        35.90 
TCGA-77-A5G3 TCGA-85-7699 TCGA-85-8071 TCGA-85-8288 TCGA-85-8352 TCGA-85-8479 
      117.57         0.03        14.07         1.78         2.20         0.72 
TCGA-85-8580 TCGA-85-A4QR TCGA-90-7766 TCGA-92-8063 TCGA-96-7544 TCGA-98-8022 
       14.60         0.82         9.50         4.01        39.88         7.33 
TCGA-LA-A446 TCGA-NC-A5HG TCGA-NC-A5HI 
        1.18        50.86        37.32 

$`XQ LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        79.46         4.80        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 
       13.02        59.51        24.92         1.61        43.76         6.15 
TCGA-18-4721 TCGA-21-1070 TCGA-21-1071 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 
       90.51       119.54        46.88        70.13        60.89        34.78 
TCGA-21-1078 TCGA-21-1079 TCGA-21-1081 TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 
       15.55        31.69         9.30        31.63        88.08        41.69 
TCGA-21-5786 TCGA-21-5787 TCGA-21-A5DI TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 
       33.93        10.82        32.19         7.33        14.93         4.31 
TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 TCGA-22-4593 
       64.21         1.74        14.10        27.02        48.82        35.08 
TCGA-22-4594 TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 
       48.33        24.13         0.56        38.17        34.75        13.12 
TCGA-22-4605 TCGA-22-4609 TCGA-22-5471 TCGA-22-5472 TCGA-22-5474 TCGA-22-5478 
       32.02         9.53        31.73        64.90        14.60         0.79 
TCGA-22-5479 TCGA-22-5480 TCGA-22-5482 TCGA-22-5483 TCGA-22-5489 TCGA-22-5492 
       54.28        71.34        11.74        18.84        62.86        16.60 
TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4583 
        7.63       114.05        97.94        43.10       173.79       141.34 
TCGA-33-4586 TCGA-33-4589 TCGA-33-6737 TCGA-33-6738 TCGA-34-2596 TCGA-34-2604 
       14.07        10.98        19.76        26.99         2.63        31.50 
TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 
       32.84        31.23        50.24        67.79        56.38         9.04 
TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-7107 
       23.24        12.00        14.07        30.94        18.12         1.08 
TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 
        3.95         0.43         0.39         6.54         8.09         7.46 
TCGA-37-4133 TCGA-37-5819 TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 
        7.82         3.39        47.80        74.07        44.71        68.58 
TCGA-39-5022 TCGA-39-5024 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 
       55.17        70.03        24.33         1.94        27.35        36.39 
TCGA-39-5035 TCGA-39-5036 TCGA-39-5039 TCGA-39-5040 TCGA-43-2576 TCGA-43-2578 
       15.58        35.64        17.88        17.06        40.21        22.49 
TCGA-43-2581 TCGA-43-3394 TCGA-43-3920 TCGA-43-5670 TCGA-43-6143 TCGA-43-6647 
       38.66        27.02        33.07        18.05        12.36        24.89 
TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 
       10.19         5.42         3.78         1.58        66.51         6.64 
TCGA-43-8118 TCGA-43-A474 TCGA-43-A475 TCGA-43-A56V TCGA-46-3768 TCGA-46-6026 
        2.93        11.61         9.73         5.06         9.96        13.87 
TCGA-51-4079 TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 TCGA-52-7811 TCGA-52-7812 
        0.39        29.95        17.79         5.42         8.75        27.45 
TCGA-56-1622 TCGA-56-5897 TCGA-56-5898 TCGA-56-6545 TCGA-56-6546 TCGA-56-7223 
       28.93         0.10        18.25         2.04         1.02         0.99 
TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 TCGA-56-7730 TCGA-56-7822 TCGA-56-8503 
        1.45         1.32         0.85         0.20         0.03         1.35 
TCGA-56-8504 TCGA-56-8622 TCGA-56-8624 TCGA-56-8626 TCGA-56-8628 TCGA-56-8629 
        5.82         1.78         1.18         0.56         0.53         1.12 
TCGA-56-A49D TCGA-56-A4BX TCGA-56-A4BY TCGA-56-A4ZJ TCGA-56-A4ZK TCGA-56-A5DS 
        0.99         1.51         0.99         1.02         0.13         0.26 
TCGA-58-8386 TCGA-58-8387 TCGA-58-8393 TCGA-58-A46J TCGA-58-A46K TCGA-58-A46L 
        0.03        13.25        34.78        64.87        34.36        36.59 
TCGA-58-A46M TCGA-58-A46N TCGA-60-2695 TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 
       23.24        17.72        21.07        12.23        10.22        96.82 
TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 
       37.94        92.71        21.70        80.42        49.48        66.51 
TCGA-60-2711 TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 
       41.39        50.33        35.34        48.49        42.61         3.16 
TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-66-2734 TCGA-66-2737 
       29.85        35.90        23.57        26.79        43.10         2.01 
TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 
       21.07         0.99         1.02         2.01         0.92         0.99 
TCGA-66-2758 TCGA-66-2759 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 
       20.98        25.02         2.01         1.02         2.01         2.01 
TCGA-66-2769 TCGA-66-2770 TCGA-66-2771 TCGA-66-2777 TCGA-66-2778 TCGA-66-2781 
        7.07        23.01        19.00         2.01        19.00         3.98 
TCGA-66-2783 TCGA-66-2785 TCGA-66-2787 TCGA-66-2788 TCGA-66-2791 TCGA-66-2792 
       24.95         1.94        40.01        22.98         5.03        30.02 
TCGA-66-2793 TCGA-66-2794 TCGA-66-2800 TCGA-68-7757 TCGA-68-8250 TCGA-68-8251 
       10.06        54.08        49.05         6.94         8.02         3.12 
TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 TCGA-77-7138 TCGA-77-7139 TCGA-77-7140 
       29.56        73.08        75.09        11.18        89.95        20.78 
TCGA-77-7141 TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 
        0.49        70.09       106.95         0.16        46.78        15.75 
TCGA-77-8007 TCGA-77-8008 TCGA-77-8009 TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 
        6.51        86.76        53.95        37.81        82.92        12.59 
TCGA-77-8133 TCGA-77-8138 TCGA-77-8139 TCGA-77-8143 TCGA-77-8145 TCGA-77-8148 
       53.92        17.69       104.09        26.40         6.97         9.63 
TCGA-77-8150 TCGA-77-8156 TCGA-77-A5FZ TCGA-77-A5GB TCGA-77-A5GH TCGA-85-6560 
       54.41         0.33       126.18        30.81        23.44         0.36 
TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 TCGA-85-7697 TCGA-85-7698 TCGA-85-7843 
        0.79         1.12         0.59         0.33         1.61         1.15 
TCGA-85-7844 TCGA-85-7950 TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 
        1.25         1.97         0.85         1.97         0.53        16.77 
TCGA-85-8072 TCGA-85-8276 TCGA-85-8277 TCGA-85-8287 TCGA-85-8350 TCGA-85-8351 
        1.18         0.43         0.36         1.45         1.97         1.81 
TCGA-85-8353 TCGA-85-8354 TCGA-85-8355 TCGA-85-8481 TCGA-85-8582 TCGA-85-8664 
        1.78         2.01         0.66         0.66        13.91         0.10 
TCGA-85-8666 TCGA-85-A4CL TCGA-85-A50M TCGA-85-A513 TCGA-85-A53L TCGA-90-6837 
       15.58         0.46         0.62         0.79         0.43        24.89 
TCGA-90-7767 TCGA-90-7769 TCGA-90-7964 TCGA-90-A4ED TCGA-90-A4EE TCGA-92-7340 
        2.93        11.77        14.07         8.02        10.88         2.70 
TCGA-92-7341 TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 TCGA-94-7943 
        3.48         5.26         2.27         2.86         0.16        11.70 
TCGA-96-7545 TCGA-96-8169 TCGA-96-8170 TCGA-96-A4JK TCGA-96-A4JL TCGA-98-7454 
       44.15         6.18         6.90         8.98         6.02         8.42 
TCGA-98-8020 TCGA-98-8021 TCGA-98-8023 TCGA-J1-A4AH TCGA-L3-A4E7 TCGA-L3-A524 
        2.73        13.58        10.13         7.30         1.15        14.76 
TCGA-MF-A522 TCGA-NC-A5HE 
        3.02        56.61 

  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
             0.03              0.03 
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
           122.43            173.79 
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
           14.070            13.415 
[1] "0.0 - 122.4 (14.1)" "0.0 - 173.8 (13.4)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56V        TCGA-46-3768        TCGA-46-6025 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-5898 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-56-7730        TCGA-56-7822        TCGA-56-8503        TCGA-56-8504 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-56-8622        TCGA-56-8624        TCGA-56-8625        TCGA-56-8626 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-56-A4BY        TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-58-8386        TCGA-58-8387        TCGA-58-8388        TCGA-58-8390 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" 
       TCGA-58-8391        TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J 
  "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-58-A46K        TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-60-2695        TCGA-60-2696        TCGA-60-2697        TCGA-60-2698 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-60-2703        TCGA-60-2704        TCGA-60-2706        TCGA-60-2707 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-60-2708        TCGA-60-2709        TCGA-60-2710        TCGA-60-2711 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-60-2712        TCGA-60-2713        TCGA-60-2714        TCGA-60-2715 
  "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-60-2716        TCGA-60-2719        TCGA-60-2720        TCGA-60-2721 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-60-2722        TCGA-60-2723        TCGA-60-2724        TCGA-60-2725 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-60-2726        TCGA-66-2727        TCGA-66-2734        TCGA-66-2737 
  "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2753        TCGA-66-2754 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-66-2755        TCGA-66-2756        TCGA-66-2757        TCGA-66-2758 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-66-2759        TCGA-66-2763        TCGA-66-2765        TCGA-66-2766 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-66-2767        TCGA-66-2768        TCGA-66-2769        TCGA-66-2770 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-66-2771        TCGA-66-2773        TCGA-66-2777        TCGA-66-2778 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-66-2780        TCGA-66-2781        TCGA-66-2782        TCGA-66-2783 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-66-2785        TCGA-66-2786        TCGA-66-2787        TCGA-66-2788 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-66-2789        TCGA-66-2790        TCGA-66-2791        TCGA-66-2792 
  "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-66-2793        TCGA-66-2794        TCGA-66-2795        TCGA-66-2800 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-68-7755        TCGA-68-7756        TCGA-68-7757        TCGA-68-8250 
  "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-68-8251        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8007 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-77-8008        TCGA-77-8009        TCGA-77-8128        TCGA-77-8130 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-77-8131        TCGA-77-8133        TCGA-77-8136        TCGA-77-8138 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8140        TCGA-77-8143        TCGA-77-8144 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-77-8145        TCGA-77-8148        TCGA-77-8150        TCGA-77-8153 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ        TCGA-77-A5G3 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6560        TCGA-85-6561 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-7950 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-85-8048        TCGA-85-8049        TCGA-85-8052        TCGA-85-8070 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-85-8071        TCGA-85-8072        TCGA-85-8276        TCGA-85-8277 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-85-8287        TCGA-85-8288        TCGA-85-8350        TCGA-85-8351 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-85-8352        TCGA-85-8353        TCGA-85-8354        TCGA-85-8355 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-85-8479        TCGA-85-8481        TCGA-85-8580        TCGA-85-8582 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-85-8664        TCGA-85-8666        TCGA-85-A4CL        TCGA-85-A4QR 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-85-A50M        TCGA-85-A513        TCGA-85-A53L        TCGA-90-6837 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-90-A4ED        TCGA-90-A4EE        TCGA-92-7340        TCGA-92-7341 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-92-8063        TCGA-92-8064        TCGA-92-8065        TCGA-94-7033 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-94-7557        TCGA-94-7943        TCGA-96-7544        TCGA-96-7545 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-96-8169        TCGA-96-8170        TCGA-96-A4JK        TCGA-96-A4JL 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-NC-A5HI 
  "XQ LOSS MUTATED" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56V        TCGA-46-3768        TCGA-46-6025 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-5898 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-56-7730        TCGA-56-7822        TCGA-56-8503        TCGA-56-8504 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-56-8622        TCGA-56-8624        TCGA-56-8625        TCGA-56-8626 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-56-A4BY        TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-58-8386        TCGA-58-8387        TCGA-58-8388        TCGA-58-8390 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" 
       TCGA-58-8391        TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J 
  "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-58-A46K        TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-60-2695        TCGA-60-2696        TCGA-60-2697        TCGA-60-2698 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-60-2703        TCGA-60-2704        TCGA-60-2706        TCGA-60-2707 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-60-2708        TCGA-60-2709        TCGA-60-2710        TCGA-60-2711 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-60-2712        TCGA-60-2713        TCGA-60-2714        TCGA-60-2715 
  "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-60-2716        TCGA-60-2719        TCGA-60-2720        TCGA-60-2721 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-60-2722        TCGA-60-2723        TCGA-60-2724        TCGA-60-2725 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-60-2726        TCGA-66-2727        TCGA-66-2734        TCGA-66-2737 
  "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2753        TCGA-66-2754 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-66-2755        TCGA-66-2756        TCGA-66-2757        TCGA-66-2758 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-66-2759        TCGA-66-2763        TCGA-66-2765        TCGA-66-2766 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-66-2767        TCGA-66-2768        TCGA-66-2769        TCGA-66-2770 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-66-2771        TCGA-66-2773        TCGA-66-2777        TCGA-66-2778 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-66-2780        TCGA-66-2781        TCGA-66-2782        TCGA-66-2783 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-66-2785        TCGA-66-2786        TCGA-66-2787        TCGA-66-2788 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-66-2789        TCGA-66-2790        TCGA-66-2791        TCGA-66-2792 
  "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-66-2793        TCGA-66-2794        TCGA-66-2795        TCGA-66-2800 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-68-7755        TCGA-68-7756        TCGA-68-7757        TCGA-68-8250 
  "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-68-8251        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8007 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-77-8008        TCGA-77-8009        TCGA-77-8128        TCGA-77-8130 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-77-8131        TCGA-77-8133        TCGA-77-8136        TCGA-77-8138 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8140        TCGA-77-8143        TCGA-77-8144 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-77-8145        TCGA-77-8148        TCGA-77-8150        TCGA-77-8153 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ        TCGA-77-A5G3 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6560        TCGA-85-6561 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-7950 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-85-8048        TCGA-85-8049        TCGA-85-8052        TCGA-85-8070 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-85-8071        TCGA-85-8072        TCGA-85-8276        TCGA-85-8277 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-85-8287        TCGA-85-8288        TCGA-85-8350        TCGA-85-8351 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-85-8352        TCGA-85-8353        TCGA-85-8354        TCGA-85-8355 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-85-8479        TCGA-85-8481        TCGA-85-8580        TCGA-85-8582 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-85-8664        TCGA-85-8666        TCGA-85-A4CL        TCGA-85-A4QR 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-85-A50M        TCGA-85-A513        TCGA-85-A53L        TCGA-90-6837 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-90-A4ED        TCGA-90-A4EE        TCGA-92-7340        TCGA-92-7341 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-92-8063        TCGA-92-8064        TCGA-92-8065        TCGA-94-7033 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-94-7557        TCGA-94-7943        TCGA-96-7544        TCGA-96-7545 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-96-8169        TCGA-96-8170        TCGA-96-A4JK        TCGA-96-A4JL 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-NC-A5HI 
  "XQ LOSS MUTATED" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-22-A5C4        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-33-4586        TCGA-33-4587        TCGA-33-4589        TCGA-33-6737 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-33-6738        TCGA-34-2596        TCGA-34-2600        TCGA-34-2604 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-34-2605        TCGA-34-2608        TCGA-34-2609        TCGA-34-5231 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-34-5240        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3783        TCGA-37-3789 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-37-3792        TCGA-37-4129        TCGA-37-4130        TCGA-37-4132 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-4141        TCGA-37-5819 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-39-5040        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-5670 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-43-A474 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-43-A475        TCGA-43-A56V        TCGA-46-3768        TCGA-46-6025 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-5898 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-56-7730        TCGA-56-7822        TCGA-56-8503        TCGA-56-8504 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-56-8622        TCGA-56-8624        TCGA-56-8625        TCGA-56-8626 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-56-A4BY        TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-58-8386        TCGA-58-8387        TCGA-58-8388        TCGA-58-8390 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" 
       TCGA-58-8391        TCGA-58-8392        TCGA-58-8393        TCGA-58-A46J 
  "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-58-A46K        TCGA-58-A46L        TCGA-58-A46M        TCGA-58-A46N 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-60-2695        TCGA-60-2696        TCGA-60-2697        TCGA-60-2698 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-60-2703        TCGA-60-2704        TCGA-60-2706        TCGA-60-2707 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-60-2708        TCGA-60-2709        TCGA-60-2710        TCGA-60-2711 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-60-2712        TCGA-60-2713        TCGA-60-2714        TCGA-60-2715 
  "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-60-2716        TCGA-60-2719        TCGA-60-2720        TCGA-60-2721 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-60-2722        TCGA-60-2723        TCGA-60-2724        TCGA-60-2725 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-60-2726        TCGA-66-2727        TCGA-66-2734        TCGA-66-2737 
  "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2753        TCGA-66-2754 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-66-2755        TCGA-66-2756        TCGA-66-2757        TCGA-66-2758 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-66-2759        TCGA-66-2763        TCGA-66-2765        TCGA-66-2766 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-66-2767        TCGA-66-2768        TCGA-66-2769        TCGA-66-2770 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-66-2771        TCGA-66-2773        TCGA-66-2777        TCGA-66-2778 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-66-2780        TCGA-66-2781        TCGA-66-2782        TCGA-66-2783 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-66-2785        TCGA-66-2786        TCGA-66-2787        TCGA-66-2788 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-66-2789        TCGA-66-2790        TCGA-66-2791        TCGA-66-2792 
  "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-66-2793        TCGA-66-2794        TCGA-66-2795        TCGA-66-2800 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-68-7755        TCGA-68-7756        TCGA-68-7757        TCGA-68-8250 
  "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-68-8251        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8007 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-77-8008        TCGA-77-8009        TCGA-77-8128        TCGA-77-8130 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-77-8131        TCGA-77-8133        TCGA-77-8136        TCGA-77-8138 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8140        TCGA-77-8143        TCGA-77-8144 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-77-8145        TCGA-77-8148        TCGA-77-8150        TCGA-77-8153 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ        TCGA-77-A5G3 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-77-A5GB        TCGA-77-A5GH        TCGA-85-6560        TCGA-85-6561 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-85-6798        TCGA-85-7696        TCGA-85-7697        TCGA-85-7698 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-85-7699        TCGA-85-7843        TCGA-85-7844        TCGA-85-7950 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-85-8048        TCGA-85-8049        TCGA-85-8052        TCGA-85-8070 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-85-8071        TCGA-85-8072        TCGA-85-8276        TCGA-85-8277 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-85-8287        TCGA-85-8288        TCGA-85-8350        TCGA-85-8351 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-85-8352        TCGA-85-8353        TCGA-85-8354        TCGA-85-8355 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-85-8479        TCGA-85-8481        TCGA-85-8580        TCGA-85-8582 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-85-8664        TCGA-85-8666        TCGA-85-A4CL        TCGA-85-A4QR 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-85-A50M        TCGA-85-A513        TCGA-85-A53L        TCGA-90-6837 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-90-7964 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-90-A4ED        TCGA-90-A4EE        TCGA-92-7340        TCGA-92-7341 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-92-8063        TCGA-92-8064        TCGA-92-8065        TCGA-94-7033 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-94-7557        TCGA-94-7943        TCGA-96-7544        TCGA-96-7545 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-96-8169        TCGA-96-8170        TCGA-96-A4JK        TCGA-96-A4JL 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-NC-A5HI 
  "XQ LOSS MUTATED" 
[1] "hr=" "1"  
D80V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  XQ LOSS MUTATED         0       19       25        0        11        15
  XQ LOSS WILD-TYPE       1       49      108        1        39        56
                   vv
clus                STAGE IIIA STAGE IIIB STAGE IV
  XQ LOSS MUTATED           10          5        0
  XQ LOSS WILD-TYPE         44         15        5
D80V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  XQ LOSS MUTATED    27  43  10   7
  XQ LOSS WILD-TYPE  66 207  34  12
D80V4, multiclass
    clus
vv   XQ LOSS MUTATED XQ LOSS WILD-TYPE
  T1              27                66
  T2              43               207
  T3              10                34
  T4               7                12
                   vv
clus                 N0  N1  N2  N3
  XQ LOSS MUTATED    56  26   4   1
  XQ LOSS WILD-TYPE 197  83  30   4
D80V5, multiclass
    clus
vv   XQ LOSS MUTATED XQ LOSS WILD-TYPE
  N0              56               197
  N1              26                83
  N2               4                30
  N3               1                 4
                   vv
clus                 M0  M1  MX
  XQ LOSS MUTATED    75   0   9
  XQ LOSS WILD-TYPE 273   5  38
D80V6, multiclass
    clus
vv   XQ LOSS MUTATED XQ LOSS WILD-TYPE
  M0              75               273
  M1               0                 5
  MX               9                38
D80V7, binary
                   cls
clus                  0   1
  XQ LOSS MUTATED    26  61
  XQ LOSS WILD-TYPE  75 244
[1] "tbl2"
                   cls
clus                [,1] [,2]
  XQ LOSS MUTATED     26   61
  XQ LOSS WILD-TYPE   75  244
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  FEMALE              26                75
  MALE                61               244
D80V8, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  XQ LOSS MUTATED                                       3
  XQ LOSS WILD-TYPE                                     9
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  XQ LOSS MUTATED                                        1
  XQ LOSS WILD-TYPE                                      5
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  XQ LOSS MUTATED                                         1
  XQ LOSS WILD-TYPE                                       0
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  XQ LOSS MUTATED                                                            82
  XQ LOSS WILD-TYPE                                                         305
D80V9, multiclass
                                                             clus
vv                                                            XQ LOSS MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     3
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                    1
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                   1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              82
                                                             clus
vv                                                            XQ LOSS WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       9
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                      5
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                     0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               305
D80V10, binary
                   cls
clus                  0   1
  XQ LOSS MUTATED     3  84
  XQ LOSS WILD-TYPE   9 310
[1] "tbl2"
                   cls
clus                [,1] [,2]
  XQ LOSS MUTATED      3   84
  XQ LOSS WILD-TYPE    9  310
     clus
vv    XQ LOSS MUTATED XQ LOSS WILD-TYPE
  NO                3                 9
  YES              84               310
D80V11, continuous
D80V12, continuous
                   vv
clus                 R0  R1  R2  RX
  XQ LOSS MUTATED    73   1   0   3
  XQ LOSS WILD-TYPE 257   7   4  15
D80V13, multiclass
    clus
vv   XQ LOSS MUTATED XQ LOSS WILD-TYPE
  R0              73               257
  R1               1                 7
  R2               0                 4
  RX               3                15
> q(save="no")
