
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> source("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/13/Correlate_Genomic_Events.R")
> result <- main("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/13/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-tTRUE", "-iD=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/LUSC-TP/6068721/transformed.cor.cli.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/Append_Data/LUSC-TP/6154711/LUSC-TP.merged_data.txt", "-fF=", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=1", "-cQ=0.25", "-MF=ONLYSIG", "-oT=LUSC-TP", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "terrence_modification_tag"
[1] TRUE
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"         "-oT=LUSC-TP"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/Append_Data/LUSC-TP/6154711/LUSC-TP.merged_data.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/LUSC-TP/6068721/transformed.cor.cli.txt"

nPatients in clinical file=408, in cluster file=177, common to both=177
[1]  17 177
[1] "CDKN2A MUTATION ANALYSIS"
[1] 3
  CDKN2A MUTATED CDKN2A WILD-TYPE 
              26              151 
  CDKN2A MUTATED CDKN2A WILD-TYPE 
              26              151 
[1] "TP53 MUTATION ANALYSIS"
[1] 3
  TP53 MUTATED TP53 WILD-TYPE 
           141             36 
  TP53 MUTATED TP53 WILD-TYPE 
           141             36 
[1] "NFE2L2 MUTATION ANALYSIS"
[1] 3
  NFE2L2 MUTATED NFE2L2 WILD-TYPE 
              27              150 
  NFE2L2 MUTATED NFE2L2 WILD-TYPE 
              27              150 
[1] "PIK3CA MUTATION ANALYSIS"
[1] 3
  PIK3CA MUTATED PIK3CA WILD-TYPE 
              27              150 
  PIK3CA MUTATED PIK3CA WILD-TYPE 
              27              150 
[1] "PTEN MUTATION ANALYSIS"
[1] 3
  PTEN MUTATED PTEN WILD-TYPE 
            14            163 
  PTEN MUTATED PTEN WILD-TYPE 
            14            163 
[1] "KEAP1 MUTATION ANALYSIS"
[1] 3
  KEAP1 MUTATED KEAP1 WILD-TYPE 
             22             155 
  KEAP1 MUTATED KEAP1 WILD-TYPE 
             22             155 
[1] "MLL2 MUTATION ANALYSIS"
[1] 3
  MLL2 MUTATED MLL2 WILD-TYPE 
            35            142 
  MLL2 MUTATED MLL2 WILD-TYPE 
            35            142 
[1] "CSMD3 MUTATION ANALYSIS"
[1] 3
  CSMD3 MUTATED CSMD3 WILD-TYPE 
             81              96 
  CSMD3 MUTATED CSMD3 WILD-TYPE 
             81              96 
[1] "RB1 MUTATION ANALYSIS"
[1] 3
  RB1 MUTATED RB1 WILD-TYPE 
           12           165 
  RB1 MUTATED RB1 WILD-TYPE 
           12           165 
[1] "HS6ST1 MUTATION ANALYSIS"
[1] 3
  HS6ST1 MUTATED HS6ST1 WILD-TYPE 
               5              172 
  HS6ST1 MUTATED HS6ST1 WILD-TYPE 
               5              172 
[1] "FBXW7 MUTATION ANALYSIS"
[1] 3
  FBXW7 MUTATED FBXW7 WILD-TYPE 
             10             167 
  FBXW7 MUTATED FBXW7 WILD-TYPE 
             10             167 
[1] "ZNF567 MUTATION ANALYSIS"
[1] 3
  ZNF567 MUTATED ZNF567 WILD-TYPE 
               3              174 
  ZNF567 MUTATED ZNF567 WILD-TYPE 
               3              174 
[1] "ELTD1 MUTATION ANALYSIS"
[1] 3
  ELTD1 MUTATED ELTD1 WILD-TYPE 
             18             159 
  ELTD1 MUTATED ELTD1 WILD-TYPE 
             18             159 
[1] "ASCL4 MUTATION ANALYSIS"
[1] 3
  ASCL4 MUTATED ASCL4 WILD-TYPE 
              6             171 
  ASCL4 MUTATED ASCL4 WILD-TYPE 
              6             171 
[1] "OR2G6 MUTATION ANALYSIS"
[1] 3
  OR2G6 MUTATED OR2G6 WILD-TYPE 
             16             161 
  OR2G6 MUTATED OR2G6 WILD-TYPE 
             16             161 
[1] "HLA-A MUTATION ANALYSIS"
[1] 3
  HLA-A MUTATED HLA-A WILD-TYPE 
              6             171 
  HLA-A MUTATED HLA-A WILD-TYPE 
              6             171 
[1] "NOTCH1 MUTATION ANALYSIS"
[1] 3
  NOTCH1 MUTATED NOTCH1 WILD-TYPE 
              14              163 
  NOTCH1 MUTATED NOTCH1 WILD-TYPE 
              14              163 
[1] "terrence_modification_tag"
[1] TRUE
[1] "data2feature, selection="
 [1] "YEARSTOBIRTH"                          
 [2] "VITALSTATUS"                           
 [3] "DAYSTODEATH"                           
 [4] "DAYSTOLASTFOLLOWUP"                    
 [5] "PRIMARYSITEOFDESEASE"                  
 [6] "NEOPLASM.DISEASESTAGE"                 
 [7] "PATHOLOGY.T.STAGE"                     
 [8] "PATHOLOGY.N.STAGE"                     
 [9] "PATHOLOGY.M.STAGE"                     
[10] "DCCUPLOADDATE"                         
[11] "GENDER"                                
[12] "DATEOFINITIALPATHOLOGICDIAGNOSIS"      
[13] "DAYSTOLASTKNOWNALIVE"                  
[14] "RADIATIONTHERAPY"                      
[15] "KARNOFSKYPERFORMANCESCORE"             
[16] "HISTOLOGICALTYPE"                      
[17] "RADIATIONS.RADIATION.REGIMENINDICATION"
[18] "NUMBERPACKYEARSSMOKED"                 
[19] "YEAROFTOBACCOSMOKINGONSET"             
[20] "COMPLETENESS.OF.RESECTION"             
[21] "GLEASON_SCORE"                         
[22] "PSA_VALUE"                             
[23] "DAYS_TO_PSA"                           
[24] "BATCHNUMBER"                           

Input Data has 24 rows and 177 columns.

[1] "Batch" "24"   
[1] "Last Follow UP"
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
         370          136         2466         2417          146         1415 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
         345          396         1810          862          758           49 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
        1331          187           85         2753           92          826 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 
        3636         1426         1852         1058          473          283 
TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 
         962         1268         1032          329          223          131 
TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 
          53          429          822          622         1067          734 
TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 
        1161         1057          399          587          358          965 
TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 
        1974         1932          444         1345           24         2170 
TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 
         357          915         1912         1713          505         2524 
TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 
        3469         2979         1311         5286         3149         4299 
TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 
         428           NA           80         1874          999         1528 
TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 
        2062         1715           NA          707          365          428 
TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 
         941          551           NA          120           13          238 
TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 
         207           12          103         2253         1360         2086 
TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 
          NA         2130         1848           52          740           59 
TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 
         832          474         1084         1086          544          684 
TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 
         822         1006          349          376          757          310 
TCGA-43-6771 TCGA-46-3765 TCGA-46-3767 TCGA-46-3768 TCGA-46-3769 TCGA-46-6025 
          NA           NA           NA           NA           NA          324 
TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 
         422           12           12          911          880            3 
TCGA-56-5898 TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 
         555           62           31          311          660         2446 
TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 
        1505         2023         1259          274         1731         1075 
TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 
        1296           96          982          908         1092          717 
TCGA-60-2725 TCGA-60-2726 TCGA-63-5128 TCGA-63-5131 TCGA-63-6202 TCGA-66-2727 
         815          358           NA           NA           NA           NA 
TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 
        1311          641           30           61           28           30 
TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 
          30          638          761           30           61           31 
TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 
          61           61          700          578           NA           61 
TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 
         578           NA          121           NA          759           59 
TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 
         790         1217          699           NA           NA          913 
TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-70-6722 TCGA-70-6723 
          NA         1645          122         1492           NA           NA 
TCGA-85-6175 TCGA-85-6560 TCGA-85-6561 
          NA           11           24 
Variable 1:'AGE':	nDistinctValues=37,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 3:'DAYSTODEATH':	nDistinctValues=75,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'DAYSTOLASTFOLLOWUP':	nDistinctValues=139,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 5:'PRIMARY.SITE.OF.DISEASE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 6:'NEOPLASM.DISEASESTAGE':	nDistinctValues=7,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'PATHOLOGY.T.STAGE':	nDistinctValues=8,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'PATHOLOGY.N.STAGE':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'PATHOLOGY.M.STAGE':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'DCCUPLOADDAY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 11:'GENDER':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'DAYOFINITIALPATHOLOGICDIAGNOSIS':	nDistinctValues=15,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 13:'DAYSTOLASTKNOWNALIVE':	nDistinctValues=105,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 14:'RADIATION.THERAPY':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 15:'KARNOFSKY.PERFORMANCE.SCORE':	nDistinctValues=7,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 16:'HISTOLOGICAL.TYPE':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 17:'RADIATIONS.RADIATION.REGIMENINDICATION':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 18:'NUMBERPACKYEARSSMOKED':	nDistinctValues=56,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 19:'YEAROFTOBACCOSMOKINGONSET':	nDistinctValues=40,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 20:'COMPLETENESS.OF.RESECTION':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 21:'GLEASON_SCORE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 22:'PSA_VALUE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 23:'DAYS_TO_PSA':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 24:'BATCH.NUMBER':	nDistinctValues=11,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
 [1] "AGE"                                   
 [2] "NEOPLASM.DISEASESTAGE"                 
 [3] "PATHOLOGY.T.STAGE"                     
 [4] "PATHOLOGY.N.STAGE"                     
 [5] "PATHOLOGY.M.STAGE"                     
 [6] "GENDER"                                
 [7] "KARNOFSKY.PERFORMANCE.SCORE"           
 [8] "HISTOLOGICAL.TYPE"                     
 [9] "RADIATIONS.RADIATION.REGIMENINDICATION"
[10] "NUMBERPACKYEARSSMOKED"                 
[11] "YEAROFTOBACCOSMOKINGONSET"             
[12] "COMPLETENESS.OF.RESECTION"             
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T" "3"          
[1] "PATHOLOGY.N" "4"          
Output Data has 177 columns, 1 survival variables, and 12 non-survival variables.
AGE, nv=37, binary=FALSE, numeric=TRUE
NEOPLASM.DISEASESTAGE, nv=7, binary=FALSE, numeric=FALSE
PATHOLOGY.T.STAGE, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.T',vnm)"
vv
 T1  T2  T3  T4 
 35 116  14  12 
[1] "table(vv)"
vv
 T1  T2  T3  T4 
 35 116  14  12 
$ClinVariableName
[1] "PATHOLOGY.T.STAGE"

$Table
vv
 T1  T2  T3  T4 
 35 116  14  12 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


 T1  T2  T3  T4 
 35 116  14  12 
PATHOLOGY.N.STAGE, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.N',vnm)"
vv
 N0  N1  N2  N3 
116  39  17   5 
[1] "table(vv)"
vv
 N0  N1  N2  N3 
116  39  17   5 
$ClinVariableName
[1] "PATHOLOGY.N.STAGE"

$Table
vv
 N0  N1  N2  N3 
116  39  17   5 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


 N0  N1  N2  N3 
116  39  17   5 
PATHOLOGY.M.STAGE, nv=3, binary=FALSE, numeric=FALSE
GENDER, nv=2, binary=FALSE, numeric=FALSE
KARNOFSKY.PERFORMANCE.SCORE, nv=7, binary=FALSE, numeric=TRUE
HISTOLOGICAL.TYPE, nv=3, binary=FALSE, numeric=FALSE
RADIATIONS.RADIATION.REGIMENINDICATION, nv=2, binary=FALSE, numeric=FALSE
NUMBERPACKYEARSSMOKED, nv=56, binary=FALSE, numeric=TRUE
YEAROFTOBACCOSMOKINGONSET, nv=40, binary=FALSE, numeric=TRUE
COMPLETENESS.OF.RESECTION, nv=4, binary=FALSE, numeric=FALSE

Clustering(1) Variable = CDKN2A MUTATION ANALYSIS
D1V1, survival
                  sevent
clus2               0  1
  CDKN2A MUTATED   10 15
  CDKN2A WILD-TYPE 83 60
  CDKN2A MUTATED CDKN2A WILD-TYPE 
              25              143 
  CDKN2A MUTATED CDKN2A WILD-TYPE 
              15               60 
$`CDKN2A MUTATED`
TCGA-18-3407 TCGA-18-3411 TCGA-18-3412 TCGA-18-3416 TCGA-21-5786 TCGA-21-5787 
        4.47        46.52        11.34        28.34        33.93        10.82 
TCGA-22-1012 TCGA-22-4593 TCGA-22-4599 TCGA-22-5477 TCGA-22-5492 TCGA-33-4538 
       14.10        35.08        38.17        44.22        16.60        97.94 
TCGA-34-2596 TCGA-34-5231 TCGA-37-4135 TCGA-39-5027 TCGA-39-5028 TCGA-43-3394 
        2.63        50.24         6.81        60.76         1.71        27.02 
TCGA-51-4080 TCGA-60-2698 TCGA-60-2725 TCGA-60-2726 TCGA-66-2786 TCGA-66-2787 
        0.39        10.22        26.79        11.77        25.97        40.01 
TCGA-66-2792 
       30.02 

$`CDKN2A WILD-TYPE`
TCGA-18-3406 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3414 TCGA-18-3415 
       12.16        81.07        79.46         4.80        13.02        59.51 
TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 
       24.92         1.61        43.76         6.15         2.79        90.51 
TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 
        3.02        27.16       119.54        46.88        60.89        34.78 
TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 TCGA-21-5784 TCGA-22-0944 TCGA-22-1002 
       15.55         9.30        31.63        41.69         7.33         4.31 
TCGA-22-1011 TCGA-22-1016 TCGA-22-4591 TCGA-22-4595 TCGA-22-4601 TCGA-22-4604 
        1.74        27.02        20.45        24.13        34.75        13.12 
TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 
       19.30        11.77        31.73        64.90        63.52        14.60 
TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 
        0.79        71.34        11.74        30.08        62.86        56.32 
TCGA-33-4532 TCGA-33-4533 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 
        7.63       114.05        43.10       173.79       103.53       141.34 
TCGA-33-4586 TCGA-33-6737 TCGA-34-2600 TCGA-34-2608 TCGA-34-5232 TCGA-34-5234 
       14.07        19.76        61.61        32.84        67.79        56.38 
TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 
        9.04        23.24        12.00        14.07        30.94        18.12 
TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4141 TCGA-37-5819 
        4.96         3.95         0.43         7.82         0.39         3.39 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5029 
       74.07        44.71        68.58        55.17        70.03        24.33 
TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 
        1.94        27.35        15.58        35.64        35.70        17.88 
TCGA-43-2578 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 
       22.49        33.07        11.47        12.36        24.89        10.19 
TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4081 
        5.42         9.96        10.65        13.87         0.39        29.95 
TCGA-56-1622 TCGA-56-5897 TCGA-56-5898 TCGA-56-6545 TCGA-56-6546 TCGA-60-2707 
       28.93         0.10        18.25         2.04         1.02        21.70 
TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 
       80.42        49.48        66.51        41.39         9.01        56.91 
TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 
       35.34        42.61         3.16        32.28        29.85        35.90 
TCGA-60-2724 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 
       23.57        16.96        43.10        21.07         0.99         2.01 
TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 
        0.92         0.99         0.99        20.98        25.02         0.99 
TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 
        2.01         1.02         2.01         2.01        23.01        19.00 
TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 
        3.02         2.01        19.00        12.03         3.98        12.00 
TCGA-66-2783 TCGA-66-2785 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2793 
       24.95         1.94        22.98         4.04         5.03        10.06 
TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       54.08         4.01        49.05         0.36         0.79 

  CDKN2A MUTATED CDKN2A WILD-TYPE 
            0.39             0.10 
  CDKN2A MUTATED CDKN2A WILD-TYPE 
           97.94           173.79 
  CDKN2A MUTATED CDKN2A WILD-TYPE 
           26.79            19.30 
[1] "0.4 - 97.9 (26.8)"  "0.1 - 173.8 (19.3)"
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED"   "CDKN2A MUTATED" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
  "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
  "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED"   "CDKN2A MUTATED" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
  "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-5898 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-56-6545       TCGA-56-6546       TCGA-60-2698       TCGA-60-2707 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" 
      TCGA-60-2708       TCGA-60-2709       TCGA-60-2710       TCGA-60-2711 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-60-2712       TCGA-60-2713       TCGA-60-2715       TCGA-60-2719 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-60-2720       TCGA-60-2721       TCGA-60-2722       TCGA-60-2723 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-60-2724       TCGA-60-2725       TCGA-60-2726       TCGA-66-2727 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" 
      TCGA-66-2734       TCGA-66-2742       TCGA-66-2744       TCGA-66-2754 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-66-2755       TCGA-66-2756       TCGA-66-2757       TCGA-66-2758 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-66-2759       TCGA-66-2763       TCGA-66-2765       TCGA-66-2766 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-66-2767       TCGA-66-2768       TCGA-66-2770       TCGA-66-2771 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-66-2773       TCGA-66-2777       TCGA-66-2778       TCGA-66-2780 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-66-2781       TCGA-66-2782       TCGA-66-2783       TCGA-66-2785 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-66-2786       TCGA-66-2787       TCGA-66-2788       TCGA-66-2789 
  "CDKN2A MUTATED"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-66-2791       TCGA-66-2792       TCGA-66-2793       TCGA-66-2794 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-66-2795       TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED"   "CDKN2A MUTATED" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
  "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
  "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED"   "CDKN2A MUTATED" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
  "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-5898 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-56-6545       TCGA-56-6546       TCGA-60-2698       TCGA-60-2707 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" 
      TCGA-60-2708       TCGA-60-2709       TCGA-60-2710       TCGA-60-2711 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-60-2712       TCGA-60-2713       TCGA-60-2715       TCGA-60-2719 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-60-2720       TCGA-60-2721       TCGA-60-2722       TCGA-60-2723 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-60-2724       TCGA-60-2725       TCGA-60-2726       TCGA-66-2727 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" 
      TCGA-66-2734       TCGA-66-2742       TCGA-66-2744       TCGA-66-2754 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-66-2755       TCGA-66-2756       TCGA-66-2757       TCGA-66-2758 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-66-2759       TCGA-66-2763       TCGA-66-2765       TCGA-66-2766 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-66-2767       TCGA-66-2768       TCGA-66-2770       TCGA-66-2771 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-66-2773       TCGA-66-2777       TCGA-66-2778       TCGA-66-2780 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-66-2781       TCGA-66-2782       TCGA-66-2783       TCGA-66-2785 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-66-2786       TCGA-66-2787       TCGA-66-2788       TCGA-66-2789 
  "CDKN2A MUTATED"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-66-2791       TCGA-66-2792       TCGA-66-2793       TCGA-66-2794 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-66-2795       TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED"   "CDKN2A MUTATED" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
  "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
  "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED"   "CDKN2A MUTATED" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
  "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-5898 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-56-6545       TCGA-56-6546       TCGA-60-2698       TCGA-60-2707 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" 
      TCGA-60-2708       TCGA-60-2709       TCGA-60-2710       TCGA-60-2711 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-60-2712       TCGA-60-2713       TCGA-60-2715       TCGA-60-2719 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-60-2720       TCGA-60-2721       TCGA-60-2722       TCGA-60-2723 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-60-2724       TCGA-60-2725       TCGA-60-2726       TCGA-66-2727 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" 
      TCGA-66-2734       TCGA-66-2742       TCGA-66-2744       TCGA-66-2754 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-66-2755       TCGA-66-2756       TCGA-66-2757       TCGA-66-2758 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-66-2759       TCGA-66-2763       TCGA-66-2765       TCGA-66-2766 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-66-2767       TCGA-66-2768       TCGA-66-2770       TCGA-66-2771 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-66-2773       TCGA-66-2777       TCGA-66-2778       TCGA-66-2780 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-66-2781       TCGA-66-2782       TCGA-66-2783       TCGA-66-2785 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-66-2786       TCGA-66-2787       TCGA-66-2788       TCGA-66-2789 
  "CDKN2A MUTATED"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-66-2791       TCGA-66-2792       TCGA-66-2793       TCGA-66-2794 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-66-2795       TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
[1] "hr=" "1.5"
D1V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  CDKN2A MUTATED          5        8         2         4          5          2
  CDKN2A WILD-TYPE       22       61        11        22         19         12
                  vv
clus               STAGE IV
  CDKN2A MUTATED          0
  CDKN2A WILD-TYPE        3
D1V3, multiclass
                  vv
clus               T1 T2 T3 T4
  CDKN2A MUTATED    5 19  0  2
  CDKN2A WILD-TYPE 30 97 14 10
D1V4, multiclass
    clus
vv   CDKN2A MUTATED CDKN2A WILD-TYPE
  T1              5               30
  T2             19               97
  T3              0               14
  T4              2               10
                  vv
clus                N0  N1  N2  N3
  CDKN2A MUTATED    15   7   4   0
  CDKN2A WILD-TYPE 101  32  13   5
D1V5, multiclass
    clus
vv   CDKN2A MUTATED CDKN2A WILD-TYPE
  N0             15              101
  N1              7               32
  N2              4               13
  N3              0                5
                  vv
clus                M0  M1  MX
  CDKN2A MUTATED    25   0   0
  CDKN2A WILD-TYPE 139   3   6
D1V6, multiclass
    clus
vv   CDKN2A MUTATED CDKN2A WILD-TYPE
  M0             25              139
  M1              0                3
  MX              0                6
D1V7, binary
                  cls
clus                 0   1
  CDKN2A MUTATED     6  20
  CDKN2A WILD-TYPE  40 111
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CDKN2A MUTATED      6   20
  CDKN2A WILD-TYPE   40  111
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  FEMALE              6               40
  MALE               20              111
D1V8, continuous
                  vv
clus               LUNG BASALOID SQUAMOUS CELL CARCINOMA
  CDKN2A MUTATED                                       1
  CDKN2A WILD-TYPE                                     4
                  vv
clus               LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  CDKN2A MUTATED                                        0
  CDKN2A WILD-TYPE                                      1
                  vv
clus               LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  CDKN2A MUTATED                                                            25
  CDKN2A WILD-TYPE                                                         146
D1V9, multiclass
                                                             clus
vv                                                            CDKN2A MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    1
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             25
                                                             clus
vv                                                            CDKN2A WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      4
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              146
D1V10, binary
                  cls
clus                 0   1
  CDKN2A MUTATED     1  25
  CDKN2A WILD-TYPE   3 148
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CDKN2A MUTATED      1   25
  CDKN2A WILD-TYPE    3  148
     clus
vv    CDKN2A MUTATED CDKN2A WILD-TYPE
  NO               1                3
  YES             25              148
D1V11, continuous
D1V12, continuous
                  vv
clus                R0  R1  R2  RX
  CDKN2A MUTATED    23   0   0   2
  CDKN2A WILD-TYPE 123   2   4   8
D1V13, multiclass
    clus
vv   CDKN2A MUTATED CDKN2A WILD-TYPE
  R0             23              123
  R1              0                2
  R2              0                4
  RX              2                8

Clustering(2) Variable = TP53 MUTATION ANALYSIS
D2V1, survival
                sevent
clus2             0  1
  TP53 MUTATED   82 53
  TP53 WILD-TYPE 11 22
  TP53 MUTATED TP53 WILD-TYPE 
           135             33 
  TP53 MUTATED TP53 WILD-TYPE 
            53             22 
$`TP53 MUTATED`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 
       13.02        59.51        28.34         1.61        43.76         6.15 
TCGA-18-4086 TCGA-18-5592 TCGA-21-1076 TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 
        2.79         3.02        60.89        31.63        41.69        33.93 
TCGA-21-5787 TCGA-22-0944 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-4593 
       10.82         7.33         1.74        14.10        27.02        35.08 
TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 
       24.13        38.17        34.75        13.12        19.30        11.77 
TCGA-22-5471 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 
       31.73        63.52        14.60        44.22         0.79        71.34 
TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 
       11.74        30.08        62.86        56.32        16.60         7.63 
TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 
      114.05        97.94        43.10       173.79       103.53       141.34 
TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5232 
       14.07        19.76         2.63        61.61        32.84        67.79 
TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 
        9.04        23.24        12.00        30.94        18.12         4.96 
TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 
        3.95         0.43         7.82         6.81         0.39         3.39 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       74.07        44.71        68.58        70.03        60.76         1.71 
TCGA-39-5029 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-43-3394 
       24.33        27.35        15.58        35.64        35.70        27.02 
TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6770 TCGA-46-3768 TCGA-46-6025 
       33.07        11.47        12.36        10.19         9.96        10.65 
TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 
       13.87         0.39         0.39        29.95        28.93         0.10 
TCGA-56-5898 TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 
       18.25         2.04         1.02        10.22        21.70        80.42 
TCGA-60-2710 TCGA-60-2711 TCGA-60-2713 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 
       66.51        41.39        56.91        42.61         3.16        32.28 
TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 
       29.85        35.90        23.57        16.96        43.10        21.07 
TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 
        0.99         2.01         0.92         0.99         0.99        20.98 
TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 
       25.02         0.99         2.01         1.02         2.01         2.01 
TCGA-66-2770 TCGA-66-2777 TCGA-66-2782 TCGA-66-2783 TCGA-66-2786 TCGA-66-2787 
       23.01         2.01        12.00        24.95        25.97        40.01 
TCGA-66-2788 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 
       22.98         5.03        30.02        10.06        54.08         4.01 
TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       49.05         0.36         0.79 

$`TP53 WILD-TYPE`
TCGA-18-3412 TCGA-18-3417 TCGA-18-4721 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 
       11.34        24.92        90.51        27.16       119.54        46.88 
TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-22-1002 TCGA-22-4591 TCGA-22-5472 
       34.78        15.55         9.30         4.31        20.45        64.90 
TCGA-34-5231 TCGA-34-5234 TCGA-34-5241 TCGA-39-5022 TCGA-39-5030 TCGA-39-5039 
       50.24        56.38        14.07        55.17         1.94        17.88 
TCGA-43-2578 TCGA-43-6647 TCGA-43-6771 TCGA-60-2709 TCGA-60-2712 TCGA-60-2715 
       22.49        24.89         5.42        49.48         9.01        35.34 
TCGA-60-2725 TCGA-60-2726 TCGA-66-2771 TCGA-66-2773 TCGA-66-2778 TCGA-66-2780 
       26.79        11.77        19.00         3.02        19.00        12.03 
TCGA-66-2781 TCGA-66-2785 TCGA-66-2789 
        3.98         1.94         4.04 

  TP53 MUTATED TP53 WILD-TYPE 
          0.10           1.94 
  TP53 MUTATED TP53 WILD-TYPE 
        173.79         119.54 
  TP53 MUTATED TP53 WILD-TYPE 
         20.98          19.00 
[1] "0.1 - 173.8 (21.0)" "1.9 - 119.5 (19.0)"
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-5898 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-56-6545     TCGA-56-6546     TCGA-60-2698     TCGA-60-2707 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-60-2708     TCGA-60-2709     TCGA-60-2710     TCGA-60-2711 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-60-2712     TCGA-60-2713     TCGA-60-2715     TCGA-60-2719 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-60-2720     TCGA-60-2721     TCGA-60-2722     TCGA-60-2723 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-60-2724     TCGA-60-2725     TCGA-60-2726     TCGA-66-2727 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-66-2734     TCGA-66-2742     TCGA-66-2744     TCGA-66-2754 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-66-2755     TCGA-66-2756     TCGA-66-2757     TCGA-66-2758 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-66-2759     TCGA-66-2763     TCGA-66-2765     TCGA-66-2766 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-66-2767     TCGA-66-2768     TCGA-66-2770     TCGA-66-2771 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-66-2773     TCGA-66-2777     TCGA-66-2778     TCGA-66-2780 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-66-2781     TCGA-66-2782     TCGA-66-2783     TCGA-66-2785 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-66-2786     TCGA-66-2787     TCGA-66-2788     TCGA-66-2789 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-66-2791     TCGA-66-2792     TCGA-66-2793     TCGA-66-2794 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-66-2795     TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-5898 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-56-6545     TCGA-56-6546     TCGA-60-2698     TCGA-60-2707 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-60-2708     TCGA-60-2709     TCGA-60-2710     TCGA-60-2711 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-60-2712     TCGA-60-2713     TCGA-60-2715     TCGA-60-2719 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-60-2720     TCGA-60-2721     TCGA-60-2722     TCGA-60-2723 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-60-2724     TCGA-60-2725     TCGA-60-2726     TCGA-66-2727 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-66-2734     TCGA-66-2742     TCGA-66-2744     TCGA-66-2754 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-66-2755     TCGA-66-2756     TCGA-66-2757     TCGA-66-2758 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-66-2759     TCGA-66-2763     TCGA-66-2765     TCGA-66-2766 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-66-2767     TCGA-66-2768     TCGA-66-2770     TCGA-66-2771 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-66-2773     TCGA-66-2777     TCGA-66-2778     TCGA-66-2780 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-66-2781     TCGA-66-2782     TCGA-66-2783     TCGA-66-2785 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-66-2786     TCGA-66-2787     TCGA-66-2788     TCGA-66-2789 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-66-2791     TCGA-66-2792     TCGA-66-2793     TCGA-66-2794 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-66-2795     TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-5898 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-56-6545     TCGA-56-6546     TCGA-60-2698     TCGA-60-2707 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-60-2708     TCGA-60-2709     TCGA-60-2710     TCGA-60-2711 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-60-2712     TCGA-60-2713     TCGA-60-2715     TCGA-60-2719 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-60-2720     TCGA-60-2721     TCGA-60-2722     TCGA-60-2723 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-60-2724     TCGA-60-2725     TCGA-60-2726     TCGA-66-2727 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-66-2734     TCGA-66-2742     TCGA-66-2744     TCGA-66-2754 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-66-2755     TCGA-66-2756     TCGA-66-2757     TCGA-66-2758 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-66-2759     TCGA-66-2763     TCGA-66-2765     TCGA-66-2766 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-66-2767     TCGA-66-2768     TCGA-66-2770     TCGA-66-2771 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-66-2773     TCGA-66-2777     TCGA-66-2778     TCGA-66-2780 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-66-2781     TCGA-66-2782     TCGA-66-2783     TCGA-66-2785 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-66-2786     TCGA-66-2787     TCGA-66-2788     TCGA-66-2789 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-66-2791     TCGA-66-2792     TCGA-66-2793     TCGA-66-2794 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-66-2795     TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
[1] "hr=" "1.7"
D2V2, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  TP53 MUTATED         20       55        11        20         20         12
  TP53 WILD-TYPE        7       14         2         6          4          2
                vv
clus             STAGE IV
  TP53 MUTATED          2
  TP53 WILD-TYPE        1
D2V3, multiclass
                vv
clus             T1 T2 T3 T4
  TP53 MUTATED   27 92 10 12
  TP53 WILD-TYPE  8 24  4  0
D2V4, multiclass
    clus
vv   TP53 MUTATED TP53 WILD-TYPE
  T1           27              8
  T2           92             24
  T3           10              4
  T4           12              0
                vv
clus             N0 N1 N2 N3
  TP53 MUTATED   92 31 15  3
  TP53 WILD-TYPE 24  8  2  2
D2V5, multiclass
    clus
vv   TP53 MUTATED TP53 WILD-TYPE
  N0           92             24
  N1           31              8
  N2           15              2
  N3            3              2
                vv
clus              M0  M1  MX
  TP53 MUTATED   132   2   3
  TP53 WILD-TYPE  32   1   3
D2V6, multiclass
    clus
vv   TP53 MUTATED TP53 WILD-TYPE
  M0          132             32
  M1            2              1
  MX            3              3
D2V7, binary
                cls
clus               0   1
  TP53 MUTATED    37 104
  TP53 WILD-TYPE   9  27
[1] "tbl2"
                cls
clus             [,1] [,2]
  TP53 MUTATED     37  104
  TP53 WILD-TYPE    9   27
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  FEMALE           37              9
  MALE            104             27
D2V8, continuous
                vv
clus             LUNG BASALOID SQUAMOUS CELL CARCINOMA
  TP53 MUTATED                                       5
  TP53 WILD-TYPE                                     0
                vv
clus             LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  TP53 MUTATED                                        1
  TP53 WILD-TYPE                                      0
                vv
clus             LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  TP53 MUTATED                                                           135
  TP53 WILD-TYPE                                                          36
D2V9, multiclass
                                                             clus
vv                                                            TP53 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                  5
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                 1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)          135
                                                             clus
vv                                                            TP53 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    0
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             36
D2V10, binary
                cls
clus               0   1
  TP53 MUTATED     4 137
  TP53 WILD-TYPE   0  36
[1] "tbl2"
                cls
clus             [,1] [,2]
  TP53 MUTATED      4  137
  TP53 WILD-TYPE    0   36
     clus
vv    TP53 MUTATED TP53 WILD-TYPE
  NO             4              0
  YES          137             36
D2V11, continuous
D2V12, continuous
                vv
clus              R0  R1  R2  RX
  TP53 MUTATED   117   2   3   6
  TP53 WILD-TYPE  29   0   1   4
D2V13, multiclass
    clus
vv   TP53 MUTATED TP53 WILD-TYPE
  R0          117             29
  R1            2              0
  R2            3              1
  RX            6              4

Clustering(3) Variable = NFE2L2 MUTATION ANALYSIS
D3V1, survival
                  sevent
clus2               0  1
  NFE2L2 MUTATED   14 12
  NFE2L2 WILD-TYPE 79 63
  NFE2L2 MUTATED NFE2L2 WILD-TYPE 
              26              142 
  NFE2L2 MUTATED NFE2L2 WILD-TYPE 
              12               63 
$`NFE2L2 MUTATED`
TCGA-18-3411 TCGA-18-3415 TCGA-18-4721 TCGA-18-5592 TCGA-21-1071 TCGA-22-5473 
       46.52        59.51        90.51         3.02        46.88        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5482 TCGA-33-4586 TCGA-34-2596 TCGA-34-2608 
       14.60        44.22        11.74        14.07         2.63        32.84 
TCGA-34-5236 TCGA-34-5240 TCGA-37-4135 TCGA-39-5022 TCGA-46-3768 TCGA-51-4079 
        9.04        12.00         6.81        55.17         9.96         0.39 
TCGA-51-4081 TCGA-56-5897 TCGA-60-2709 TCGA-66-2766 TCGA-66-2770 TCGA-66-2783 
       29.95         0.10        49.48         1.02        23.01        24.95 
TCGA-66-2787 TCGA-66-2795 
       40.01         4.01 

$`NFE2L2 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3412 
       12.16         4.47        81.07        79.46         4.80        11.34 
TCGA-18-3414 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 
       13.02        28.34        24.92         1.61        43.76         6.15 
TCGA-18-4086 TCGA-18-5595 TCGA-21-1070 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 
        2.79        27.16       119.54        60.89        34.78        15.55 
TCGA-21-1081 TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 
        9.30        31.63        41.69        33.93        10.82         7.33 
TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 
        4.31         1.74        14.10        27.02        20.45        35.08 
TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 
       24.13        38.17        34.75        13.12        19.30        11.77 
TCGA-22-5471 TCGA-22-5472 TCGA-22-5478 TCGA-22-5480 TCGA-22-5485 TCGA-22-5489 
       31.73        64.90         0.79        71.34        30.08        62.86 
TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 
       56.32        16.60         7.63       114.05        97.94        43.10 
TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-6737 TCGA-34-2600 TCGA-34-5231 
      173.79       103.53       141.34        19.76        61.61        50.24 
TCGA-34-5232 TCGA-34-5234 TCGA-34-5239 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 
       67.79        56.38        23.24        14.07        30.94        18.12 
TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4141 TCGA-37-5819 
        4.96         3.95         0.43         7.82         0.39         3.39 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       74.07        44.71        68.58        70.03        60.76         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 
       24.33         1.94        27.35        15.58        35.64        35.70 
TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 
       17.88        22.49        27.02        33.07        11.47        12.36 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-6025 TCGA-46-6026 TCGA-51-4080 
       24.89        10.19         5.42        10.65        13.87         0.39 
TCGA-56-1622 TCGA-56-5898 TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 
       28.93        18.25         2.04         1.02        10.22        21.70 
TCGA-60-2708 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 
       80.42        66.51        41.39         9.01        56.91        35.34 
TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 
       42.61         3.16        32.28        29.85        35.90        23.57 
TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 
       26.79        11.77        16.96        43.10        21.07         0.99 
TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 
        2.01         0.92         0.99         0.99        20.98        25.02 
TCGA-66-2763 TCGA-66-2765 TCGA-66-2767 TCGA-66-2768 TCGA-66-2771 TCGA-66-2773 
        0.99         2.01         2.01         2.01        19.00         3.02 
TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2785 
        2.01        19.00        12.03         3.98        12.00         1.94 
TCGA-66-2786 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 
       25.97        22.98         4.04         5.03        30.02        10.06 
TCGA-66-2794 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       54.08        49.05         0.36         0.79 

  NFE2L2 MUTATED NFE2L2 WILD-TYPE 
            0.10             0.36 
  NFE2L2 MUTATED NFE2L2 WILD-TYPE 
           90.51           173.79 
  NFE2L2 MUTATED NFE2L2 WILD-TYPE 
          18.805           20.105 
[1] "0.1 - 90.5 (18.8)"  "0.4 - 173.8 (20.1)"
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
  "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
  "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
  "NFE2L2 MUTATED"   "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
  "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
  "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
  "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
  "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
  "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-5898 
  "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" 
      TCGA-56-6545       TCGA-56-6546       TCGA-60-2698       TCGA-60-2707 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-60-2708       TCGA-60-2709       TCGA-60-2710       TCGA-60-2711 
"NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-60-2712       TCGA-60-2713       TCGA-60-2715       TCGA-60-2719 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-60-2720       TCGA-60-2721       TCGA-60-2722       TCGA-60-2723 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-60-2724       TCGA-60-2725       TCGA-60-2726       TCGA-66-2727 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-66-2734       TCGA-66-2742       TCGA-66-2744       TCGA-66-2754 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-66-2755       TCGA-66-2756       TCGA-66-2757       TCGA-66-2758 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-66-2759       TCGA-66-2763       TCGA-66-2765       TCGA-66-2766 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" 
      TCGA-66-2767       TCGA-66-2768       TCGA-66-2770       TCGA-66-2771 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" 
      TCGA-66-2773       TCGA-66-2777       TCGA-66-2778       TCGA-66-2780 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-66-2781       TCGA-66-2782       TCGA-66-2783       TCGA-66-2785 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" 
      TCGA-66-2786       TCGA-66-2787       TCGA-66-2788       TCGA-66-2789 
"NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-66-2791       TCGA-66-2792       TCGA-66-2793       TCGA-66-2794 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-66-2795       TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
  "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
  "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
  "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
  "NFE2L2 MUTATED"   "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
  "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
  "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
  "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
  "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
  "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-5898 
  "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" 
      TCGA-56-6545       TCGA-56-6546       TCGA-60-2698       TCGA-60-2707 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-60-2708       TCGA-60-2709       TCGA-60-2710       TCGA-60-2711 
"NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-60-2712       TCGA-60-2713       TCGA-60-2715       TCGA-60-2719 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-60-2720       TCGA-60-2721       TCGA-60-2722       TCGA-60-2723 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-60-2724       TCGA-60-2725       TCGA-60-2726       TCGA-66-2727 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-66-2734       TCGA-66-2742       TCGA-66-2744       TCGA-66-2754 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-66-2755       TCGA-66-2756       TCGA-66-2757       TCGA-66-2758 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-66-2759       TCGA-66-2763       TCGA-66-2765       TCGA-66-2766 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" 
      TCGA-66-2767       TCGA-66-2768       TCGA-66-2770       TCGA-66-2771 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" 
      TCGA-66-2773       TCGA-66-2777       TCGA-66-2778       TCGA-66-2780 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-66-2781       TCGA-66-2782       TCGA-66-2783       TCGA-66-2785 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" 
      TCGA-66-2786       TCGA-66-2787       TCGA-66-2788       TCGA-66-2789 
"NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-66-2791       TCGA-66-2792       TCGA-66-2793       TCGA-66-2794 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-66-2795       TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
  "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
  "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
  "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
  "NFE2L2 MUTATED"   "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
  "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
  "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
  "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
  "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
  "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-5898 
  "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" 
      TCGA-56-6545       TCGA-56-6546       TCGA-60-2698       TCGA-60-2707 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-60-2708       TCGA-60-2709       TCGA-60-2710       TCGA-60-2711 
"NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-60-2712       TCGA-60-2713       TCGA-60-2715       TCGA-60-2719 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-60-2720       TCGA-60-2721       TCGA-60-2722       TCGA-60-2723 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-60-2724       TCGA-60-2725       TCGA-60-2726       TCGA-66-2727 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-66-2734       TCGA-66-2742       TCGA-66-2744       TCGA-66-2754 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-66-2755       TCGA-66-2756       TCGA-66-2757       TCGA-66-2758 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-66-2759       TCGA-66-2763       TCGA-66-2765       TCGA-66-2766 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" 
      TCGA-66-2767       TCGA-66-2768       TCGA-66-2770       TCGA-66-2771 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" 
      TCGA-66-2773       TCGA-66-2777       TCGA-66-2778       TCGA-66-2780 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-66-2781       TCGA-66-2782       TCGA-66-2783       TCGA-66-2785 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" 
      TCGA-66-2786       TCGA-66-2787       TCGA-66-2788       TCGA-66-2789 
"NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-66-2791       TCGA-66-2792       TCGA-66-2793       TCGA-66-2794 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-66-2795       TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
  "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
[1] "hr=" "1.1"
D3V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  NFE2L2 MUTATED          5       10         0         5          4          3
  NFE2L2 WILD-TYPE       22       59        13        21         20         11
                  vv
clus               STAGE IV
  NFE2L2 MUTATED          0
  NFE2L2 WILD-TYPE        3
D3V3, multiclass
                  vv
clus               T1 T2 T3 T4
  NFE2L2 MUTATED    5 17  4  1
  NFE2L2 WILD-TYPE 30 99 10 11
D3V4, multiclass
    clus
vv   NFE2L2 MUTATED NFE2L2 WILD-TYPE
  T1              5               30
  T2             17               99
  T3              4               10
  T4              1               11
                  vv
clus               N0 N1 N2 N3
  NFE2L2 MUTATED   18  5  3  1
  NFE2L2 WILD-TYPE 98 34 14  4
D3V5, multiclass
    clus
vv   NFE2L2 MUTATED NFE2L2 WILD-TYPE
  N0             18               98
  N1              5               34
  N2              3               14
  N3              1                4
                  vv
clus                M0  M1  MX
  NFE2L2 MUTATED    24   0   2
  NFE2L2 WILD-TYPE 140   3   4
D3V6, multiclass
    clus
vv   NFE2L2 MUTATED NFE2L2 WILD-TYPE
  M0             24              140
  M1              0                3
  MX              2                4
D3V7, binary
                  cls
clus                 0   1
  NFE2L2 MUTATED     4  23
  NFE2L2 WILD-TYPE  42 108
[1] "tbl2"
                  cls
clus               [,1] [,2]
  NFE2L2 MUTATED      4   23
  NFE2L2 WILD-TYPE   42  108
        clus
vv       NFE2L2 MUTATED NFE2L2 WILD-TYPE
  FEMALE              4               42
  MALE               23              108
D3V8, continuous
                  vv
clus               LUNG BASALOID SQUAMOUS CELL CARCINOMA
  NFE2L2 MUTATED                                       1
  NFE2L2 WILD-TYPE                                     4
                  vv
clus               LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  NFE2L2 MUTATED                                        0
  NFE2L2 WILD-TYPE                                      1
                  vv
clus               LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  NFE2L2 MUTATED                                                            26
  NFE2L2 WILD-TYPE                                                         145
D3V9, multiclass
                                                             clus
vv                                                            NFE2L2 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    1
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             26
                                                             clus
vv                                                            NFE2L2 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      4
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              145
D3V10, binary
                  cls
clus                 0   1
  NFE2L2 MUTATED     0  27
  NFE2L2 WILD-TYPE   4 146
[1] "tbl2"
                  cls
clus               [,1] [,2]
  NFE2L2 MUTATED      0   27
  NFE2L2 WILD-TYPE    4  146
     clus
vv    NFE2L2 MUTATED NFE2L2 WILD-TYPE
  NO               0                4
  YES             27              146
D3V11, continuous
D3V12, continuous
                  vv
clus                R0  R1  R2  RX
  NFE2L2 MUTATED    22   0   1   0
  NFE2L2 WILD-TYPE 124   2   3  10
D3V13, multiclass
    clus
vv   NFE2L2 MUTATED NFE2L2 WILD-TYPE
  R0             22              124
  R1              0                2
  R2              1                3
  RX              0               10

Clustering(4) Variable = PIK3CA MUTATION ANALYSIS
D4V1, survival
                  sevent
clus2               0  1
  PIK3CA MUTATED   11 14
  PIK3CA WILD-TYPE 82 61
  PIK3CA MUTATED PIK3CA WILD-TYPE 
              25              143 
  PIK3CA MUTATED PIK3CA WILD-TYPE 
              14               61 
$`PIK3CA MUTATED`
TCGA-18-3407 TCGA-18-3410 TCGA-18-3414 TCGA-18-5595 TCGA-21-1071 TCGA-21-1078 
        4.47         4.80        13.02        27.16        46.88        15.55 
TCGA-21-5782 TCGA-22-4613 TCGA-22-5473 TCGA-22-5489 TCGA-22-5491 TCGA-33-4547 
       31.63        11.77        63.52        62.86        56.32        43.10 
TCGA-33-4583 TCGA-34-5232 TCGA-37-3783 TCGA-37-5819 TCGA-51-4079 TCGA-60-2724 
      141.34        67.79         3.95         3.39         0.39        23.57 
TCGA-60-2726 TCGA-66-2755 TCGA-66-2759 TCGA-66-2766 TCGA-66-2773 TCGA-66-2785 
       11.77         0.92        25.02         1.02         3.02         1.94 
TCGA-85-6560 
        0.36 

$`PIK3CA WILD-TYPE`
TCGA-18-3406 TCGA-18-3408 TCGA-18-3409 TCGA-18-3411 TCGA-18-3412 TCGA-18-3415 
       12.16        81.07        79.46        46.52        11.34        59.51 
TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 
       28.34        24.92         1.61        43.76         6.15         2.79 
TCGA-18-4721 TCGA-18-5592 TCGA-21-1070 TCGA-21-1076 TCGA-21-1077 TCGA-21-1081 
       90.51         3.02       119.54        60.89        34.78         9.30 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 
       41.69        33.93        10.82         7.33         4.31         1.74 
TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 
       14.10        27.02        20.45        35.08        24.13        38.17 
TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-5471 TCGA-22-5472 TCGA-22-5474 
       34.75        13.12        19.30        31.73        64.90        14.60 
TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5492 
       44.22         0.79        71.34        11.74        30.08        16.60 
TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4566 TCGA-33-4582 TCGA-33-4586 
        7.63       114.05        97.94       173.79       103.53        14.07 
TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5234 
       19.76         2.63        61.61        32.84        50.24        56.38 
TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 
        9.04        23.24        12.00        14.07        30.94        18.12 
TCGA-34-5929 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-39-5016 
        4.96         0.43         7.82         6.81         0.39        74.07 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       44.71        68.58        55.17        70.03        60.76         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 
       24.33         1.94        27.35        15.58        35.64        35.70 
TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 
       17.88        22.49        27.02        33.07        11.47        12.36 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 
       24.89        10.19         5.42         9.96        10.65        13.87 
TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-5898 TCGA-56-6545 
        0.39        29.95        28.93         0.10        18.25         2.04 
TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 
        1.02        10.22        21.70        80.42        49.48        66.51 
TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 
       41.39         9.01        56.91        35.34        42.61         3.16 
TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2725 TCGA-66-2727 TCGA-66-2734 
       32.28        29.85        35.90        26.79        16.96        43.10 
TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 
       21.07         0.99         2.01         0.99         0.99        20.98 
TCGA-66-2763 TCGA-66-2765 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 
        0.99         2.01         2.01         2.01        23.01        19.00 
TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 
        2.01        19.00        12.03         3.98        12.00        24.95 
TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 
       25.97        40.01        22.98         4.04         5.03        30.02 
TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6561 
       10.06        54.08         4.01        49.05         0.79 

  PIK3CA MUTATED PIK3CA WILD-TYPE 
            0.36             0.10 
  PIK3CA MUTATED PIK3CA WILD-TYPE 
          141.34           173.79 
  PIK3CA MUTATED PIK3CA WILD-TYPE 
           13.02            20.98 
[1] "0.4 - 141.3 (13.0)" "0.1 - 173.8 (21.0)"
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED"   "PIK3CA MUTATED" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-5898 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-56-6545       TCGA-56-6546       TCGA-60-2698       TCGA-60-2707 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-60-2708       TCGA-60-2709       TCGA-60-2710       TCGA-60-2711 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-60-2712       TCGA-60-2713       TCGA-60-2715       TCGA-60-2719 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-60-2720       TCGA-60-2721       TCGA-60-2722       TCGA-60-2723 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-60-2724       TCGA-60-2725       TCGA-60-2726       TCGA-66-2727 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-66-2734       TCGA-66-2742       TCGA-66-2744       TCGA-66-2754 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-66-2755       TCGA-66-2756       TCGA-66-2757       TCGA-66-2758 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-66-2759       TCGA-66-2763       TCGA-66-2765       TCGA-66-2766 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-66-2767       TCGA-66-2768       TCGA-66-2770       TCGA-66-2771 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-66-2773       TCGA-66-2777       TCGA-66-2778       TCGA-66-2780 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-66-2781       TCGA-66-2782       TCGA-66-2783       TCGA-66-2785 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-66-2786       TCGA-66-2787       TCGA-66-2788       TCGA-66-2789 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-66-2791       TCGA-66-2792       TCGA-66-2793       TCGA-66-2794 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-66-2795       TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED"   "PIK3CA MUTATED" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-5898 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-56-6545       TCGA-56-6546       TCGA-60-2698       TCGA-60-2707 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-60-2708       TCGA-60-2709       TCGA-60-2710       TCGA-60-2711 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-60-2712       TCGA-60-2713       TCGA-60-2715       TCGA-60-2719 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-60-2720       TCGA-60-2721       TCGA-60-2722       TCGA-60-2723 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-60-2724       TCGA-60-2725       TCGA-60-2726       TCGA-66-2727 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-66-2734       TCGA-66-2742       TCGA-66-2744       TCGA-66-2754 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-66-2755       TCGA-66-2756       TCGA-66-2757       TCGA-66-2758 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-66-2759       TCGA-66-2763       TCGA-66-2765       TCGA-66-2766 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-66-2767       TCGA-66-2768       TCGA-66-2770       TCGA-66-2771 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-66-2773       TCGA-66-2777       TCGA-66-2778       TCGA-66-2780 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-66-2781       TCGA-66-2782       TCGA-66-2783       TCGA-66-2785 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-66-2786       TCGA-66-2787       TCGA-66-2788       TCGA-66-2789 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-66-2791       TCGA-66-2792       TCGA-66-2793       TCGA-66-2794 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-66-2795       TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED"   "PIK3CA MUTATED" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-5898 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-56-6545       TCGA-56-6546       TCGA-60-2698       TCGA-60-2707 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-60-2708       TCGA-60-2709       TCGA-60-2710       TCGA-60-2711 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-60-2712       TCGA-60-2713       TCGA-60-2715       TCGA-60-2719 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-60-2720       TCGA-60-2721       TCGA-60-2722       TCGA-60-2723 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-60-2724       TCGA-60-2725       TCGA-60-2726       TCGA-66-2727 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-66-2734       TCGA-66-2742       TCGA-66-2744       TCGA-66-2754 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-66-2755       TCGA-66-2756       TCGA-66-2757       TCGA-66-2758 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-66-2759       TCGA-66-2763       TCGA-66-2765       TCGA-66-2766 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-66-2767       TCGA-66-2768       TCGA-66-2770       TCGA-66-2771 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-66-2773       TCGA-66-2777       TCGA-66-2778       TCGA-66-2780 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-66-2781       TCGA-66-2782       TCGA-66-2783       TCGA-66-2785 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-66-2786       TCGA-66-2787       TCGA-66-2788       TCGA-66-2789 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-66-2791       TCGA-66-2792       TCGA-66-2793       TCGA-66-2794 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-66-2795       TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
[1] "hr=" "1.5"
D4V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  PIK3CA MUTATED          5       11         2         0          8          0
  PIK3CA WILD-TYPE       22       58        11        26         16         14
                  vv
clus               STAGE IV
  PIK3CA MUTATED          1
  PIK3CA WILD-TYPE        2
D4V3, multiclass
                  vv
clus                T1  T2  T3  T4
  PIK3CA MUTATED     6  15   5   1
  PIK3CA WILD-TYPE  29 101   9  11
D4V4, multiclass
    clus
vv   PIK3CA MUTATED PIK3CA WILD-TYPE
  T1              6               29
  T2             15              101
  T3              5                9
  T4              1               11
                  vv
clus               N0 N1 N2 N3
  PIK3CA MUTATED   17  6  4  0
  PIK3CA WILD-TYPE 99 33 13  5
D4V5, multiclass
    clus
vv   PIK3CA MUTATED PIK3CA WILD-TYPE
  N0             17               99
  N1              6               33
  N2              4               13
  N3              0                5
                  vv
clus                M0  M1  MX
  PIK3CA MUTATED    25   1   0
  PIK3CA WILD-TYPE 139   2   6
D4V6, multiclass
    clus
vv   PIK3CA MUTATED PIK3CA WILD-TYPE
  M0             25              139
  M1              1                2
  MX              0                6
D4V7, binary
                  cls
clus                 0   1
  PIK3CA MUTATED     4  23
  PIK3CA WILD-TYPE  42 108
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PIK3CA MUTATED      4   23
  PIK3CA WILD-TYPE   42  108
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  FEMALE              4               42
  MALE               23              108
D4V8, continuous
                  vv
clus               LUNG BASALOID SQUAMOUS CELL CARCINOMA
  PIK3CA MUTATED                                       0
  PIK3CA WILD-TYPE                                     5
                  vv
clus               LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  PIK3CA MUTATED                                        0
  PIK3CA WILD-TYPE                                      1
                  vv
clus               LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  PIK3CA MUTATED                                                            27
  PIK3CA WILD-TYPE                                                         144
D4V9, multiclass
                                                             clus
vv                                                            PIK3CA MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    0
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             27
                                                             clus
vv                                                            PIK3CA WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      5
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              144
D4V10, binary
                  cls
clus                 0   1
  PIK3CA MUTATED     0  27
  PIK3CA WILD-TYPE   4 146
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PIK3CA MUTATED      0   27
  PIK3CA WILD-TYPE    4  146
     clus
vv    PIK3CA MUTATED PIK3CA WILD-TYPE
  NO               0                4
  YES             27              146
D4V11, continuous
D4V12, continuous
                  vv
clus                R0  R1  R2  RX
  PIK3CA MUTATED    25   0   0   1
  PIK3CA WILD-TYPE 121   2   4   9
D4V13, multiclass
    clus
vv   PIK3CA MUTATED PIK3CA WILD-TYPE
  R0             25              121
  R1              0                2
  R2              0                4
  RX              1                9

Clustering(5) Variable = PTEN MUTATION ANALYSIS
D5V1, survival
                sevent
clus2             0  1
  PTEN MUTATED   10  4
  PTEN WILD-TYPE 83 71
  PTEN MUTATED PTEN WILD-TYPE 
            14            154 
  PTEN MUTATED PTEN WILD-TYPE 
             4             71 
$`PTEN MUTATED`
TCGA-18-3417 TCGA-18-3421 TCGA-22-4599 TCGA-22-5489 TCGA-33-4583 TCGA-39-5024 
       24.92        43.76        38.17        62.86       141.34        70.03 
TCGA-39-5027 TCGA-43-2578 TCGA-43-3920 TCGA-56-5897 TCGA-56-6546 TCGA-60-2707 
       60.76        22.49        33.07         0.10         1.02        21.70 
TCGA-66-2783 TCGA-66-2788 
       24.95        22.98 

$`PTEN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3419 TCGA-18-4083 
       11.34        13.02        59.51        28.34         1.61         6.15 
TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 
        2.79        90.51         3.02        27.16       119.54        46.88 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 TCGA-21-5784 
       60.89        34.78        15.55         9.30        31.63        41.69 
TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 
       33.93        10.82         7.33         4.31         1.74        14.10 
TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4601 TCGA-22-4604 
       27.02        20.45        35.08        24.13        34.75        13.12 
TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 
       19.30        11.77        31.73        64.90        63.52        14.60 
TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5491 
       44.22         0.79        71.34        11.74        30.08        56.32 
TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 
       16.60         7.63       114.05        97.94        43.10       173.79 
TCGA-33-4582 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 
      103.53        14.07        19.76         2.63        61.61        32.84 
TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 
       50.24        67.79        56.38         9.04        23.24        12.00 
TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 
       14.07        30.94        18.12         4.96         3.95         0.43 
TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 
        7.82         6.81         0.39         3.39        74.07        44.71 
TCGA-39-5021 TCGA-39-5022 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 
       68.58        55.17         1.71        24.33         1.94        27.35 
TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-3394 TCGA-43-5668 
       15.58        35.64        35.70        17.88        27.02        11.47 
TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 
       12.36        24.89        10.19         5.42         9.96        10.65 
TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5898 
       13.87         0.39         0.39        29.95        28.93        18.25 
TCGA-56-6545 TCGA-60-2698 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 
        2.04        10.22        80.42        49.48        66.51        41.39 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 
        9.01        56.91        35.34        42.61         3.16        32.28 
TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 
       29.85        35.90        23.57        26.79        11.77        16.96 
TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 
       43.10        21.07         0.99         2.01         0.92         0.99 
TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 
        0.99        20.98        25.02         0.99         2.01         1.02 
TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 
        2.01         2.01        23.01        19.00         3.02         2.01 
TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2785 TCGA-66-2786 
       19.00        12.03         3.98        12.00         1.94        25.97 
TCGA-66-2787 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 
       40.01         4.04         5.03        30.02        10.06        54.08 
TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
        4.01        49.05         0.36         0.79 

  PTEN MUTATED PTEN WILD-TYPE 
          0.10           0.36 
  PTEN MUTATED PTEN WILD-TYPE 
        141.34         173.79 
  PTEN MUTATED PTEN WILD-TYPE 
        29.010         18.185 
[1] "0.1 - 141.3 (29.0)" "0.4 - 173.8 (18.2)"
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"PTEN WILD-TYPE"   "PTEN MUTATED"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-5898 
"PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-56-6545     TCGA-56-6546     TCGA-60-2698     TCGA-60-2707 
"PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-60-2708     TCGA-60-2709     TCGA-60-2710     TCGA-60-2711 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-60-2712     TCGA-60-2713     TCGA-60-2715     TCGA-60-2719 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-60-2720     TCGA-60-2721     TCGA-60-2722     TCGA-60-2723 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-60-2724     TCGA-60-2725     TCGA-60-2726     TCGA-66-2727 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-66-2734     TCGA-66-2742     TCGA-66-2744     TCGA-66-2754 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-66-2755     TCGA-66-2756     TCGA-66-2757     TCGA-66-2758 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-66-2759     TCGA-66-2763     TCGA-66-2765     TCGA-66-2766 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-66-2767     TCGA-66-2768     TCGA-66-2770     TCGA-66-2771 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-66-2773     TCGA-66-2777     TCGA-66-2778     TCGA-66-2780 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-66-2781     TCGA-66-2782     TCGA-66-2783     TCGA-66-2785 
"PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-66-2786     TCGA-66-2787     TCGA-66-2788     TCGA-66-2789 
"PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-66-2791     TCGA-66-2792     TCGA-66-2793     TCGA-66-2794 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-66-2795     TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"PTEN WILD-TYPE"   "PTEN MUTATED"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-5898 
"PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-56-6545     TCGA-56-6546     TCGA-60-2698     TCGA-60-2707 
"PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-60-2708     TCGA-60-2709     TCGA-60-2710     TCGA-60-2711 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-60-2712     TCGA-60-2713     TCGA-60-2715     TCGA-60-2719 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-60-2720     TCGA-60-2721     TCGA-60-2722     TCGA-60-2723 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-60-2724     TCGA-60-2725     TCGA-60-2726     TCGA-66-2727 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-66-2734     TCGA-66-2742     TCGA-66-2744     TCGA-66-2754 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-66-2755     TCGA-66-2756     TCGA-66-2757     TCGA-66-2758 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-66-2759     TCGA-66-2763     TCGA-66-2765     TCGA-66-2766 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-66-2767     TCGA-66-2768     TCGA-66-2770     TCGA-66-2771 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-66-2773     TCGA-66-2777     TCGA-66-2778     TCGA-66-2780 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-66-2781     TCGA-66-2782     TCGA-66-2783     TCGA-66-2785 
"PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-66-2786     TCGA-66-2787     TCGA-66-2788     TCGA-66-2789 
"PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-66-2791     TCGA-66-2792     TCGA-66-2793     TCGA-66-2794 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-66-2795     TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"PTEN WILD-TYPE"   "PTEN MUTATED"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-5898 
"PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-56-6545     TCGA-56-6546     TCGA-60-2698     TCGA-60-2707 
"PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-60-2708     TCGA-60-2709     TCGA-60-2710     TCGA-60-2711 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-60-2712     TCGA-60-2713     TCGA-60-2715     TCGA-60-2719 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-60-2720     TCGA-60-2721     TCGA-60-2722     TCGA-60-2723 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-60-2724     TCGA-60-2725     TCGA-60-2726     TCGA-66-2727 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-66-2734     TCGA-66-2742     TCGA-66-2744     TCGA-66-2754 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-66-2755     TCGA-66-2756     TCGA-66-2757     TCGA-66-2758 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-66-2759     TCGA-66-2763     TCGA-66-2765     TCGA-66-2766 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-66-2767     TCGA-66-2768     TCGA-66-2770     TCGA-66-2771 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-66-2773     TCGA-66-2777     TCGA-66-2778     TCGA-66-2780 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-66-2781     TCGA-66-2782     TCGA-66-2783     TCGA-66-2785 
"PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-66-2786     TCGA-66-2787     TCGA-66-2788     TCGA-66-2789 
"PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-66-2791     TCGA-66-2792     TCGA-66-2793     TCGA-66-2794 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-66-2795     TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
[1] "hr=" "2.3"
D5V2, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  PTEN MUTATED          4        6         1         0          1          1
  PTEN WILD-TYPE       23       63        12        26         23         13
                vv
clus             STAGE IV
  PTEN MUTATED          1
  PTEN WILD-TYPE        2
D5V3, multiclass
                vv
clus              T1  T2  T3  T4
  PTEN MUTATED     4  10   0   0
  PTEN WILD-TYPE  31 106  14  12
D5V4, multiclass
    clus
vv   PTEN MUTATED PTEN WILD-TYPE
  T1            4             31
  T2           10            106
  T3            0             14
  T4            0             12
                vv
clus              N0  N1  N2  N3
  PTEN MUTATED    11   1   1   1
  PTEN WILD-TYPE 105  38  16   4
D5V5, multiclass
    clus
vv   PTEN MUTATED PTEN WILD-TYPE
  N0           11            105
  N1            1             38
  N2            1             16
  N3            1              4
                vv
clus              M0  M1  MX
  PTEN MUTATED    11   1   2
  PTEN WILD-TYPE 153   2   4
D5V6, multiclass
    clus
vv   PTEN MUTATED PTEN WILD-TYPE
  M0           11            153
  M1            1              2
  MX            2              4
D5V7, binary
                cls
clus               0   1
  PTEN MUTATED     3  11
  PTEN WILD-TYPE  43 120
[1] "tbl2"
                cls
clus             [,1] [,2]
  PTEN MUTATED      3   11
  PTEN WILD-TYPE   43  120
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  FEMALE            3             43
  MALE             11            120
D5V8, continuous
[1] "Remove cluster labels:" "PTEN MUTATED"          
clus
  PTEN MUTATED PTEN WILD-TYPE 
             2             34 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3410     TCGA-18-3414 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-18-3419     TCGA-21-5782     TCGA-21-5787     TCGA-22-4591 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-22-4593     TCGA-22-4595     TCGA-22-4601     TCGA-22-4604 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5472     TCGA-22-5473     TCGA-22-5474 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-22-5477     TCGA-22-5478     TCGA-22-5480     TCGA-22-5482 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-22-5485     TCGA-22-5491     TCGA-22-5492     TCGA-34-5234 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-37-4133     TCGA-37-4135     TCGA-37-5819     TCGA-60-2698 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-60-2712     TCGA-60-2715     TCGA-60-2725     TCGA-60-2726 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-70-6722     TCGA-70-6723 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" 
                vv
clus             LUNG BASALOID SQUAMOUS CELL CARCINOMA
  PTEN MUTATED                                       0
  PTEN WILD-TYPE                                     5
                vv
clus             LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  PTEN MUTATED                                        0
  PTEN WILD-TYPE                                      1
                vv
clus             LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  PTEN MUTATED                                                            14
  PTEN WILD-TYPE                                                         157
D5V9, multiclass
                                                             clus
vv                                                            PTEN MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                  0
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                 0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)           14
                                                             clus
vv                                                            PTEN WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    5
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                   1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            157
D5V10, binary
                cls
clus               0   1
  PTEN MUTATED     0  14
  PTEN WILD-TYPE   4 159
[1] "tbl2"
                cls
clus             [,1] [,2]
  PTEN MUTATED      0   14
  PTEN WILD-TYPE    4  159
     clus
vv    PTEN MUTATED PTEN WILD-TYPE
  NO             0              4
  YES           14            159
D5V11, continuous
D5V12, continuous
                vv
clus              R0  R1  R2  RX
  PTEN MUTATED    10   0   1   1
  PTEN WILD-TYPE 136   2   3   9
D5V13, multiclass
    clus
vv   PTEN MUTATED PTEN WILD-TYPE
  R0           10            136
  R1            0              2
  R2            1              3
  RX            1              9

Clustering(6) Variable = KEAP1 MUTATION ANALYSIS
D6V1, survival
                 sevent
clus2              0  1
  KEAP1 MUTATED   15  7
  KEAP1 WILD-TYPE 78 68
  KEAP1 MUTATED KEAP1 WILD-TYPE 
             22             146 
  KEAP1 MUTATED KEAP1 WILD-TYPE 
              7              68 
$`KEAP1 MUTATED`
TCGA-18-3407 TCGA-18-3409 TCGA-18-5595 TCGA-21-1077 TCGA-22-4599 TCGA-33-4532 
        4.47        79.46        27.16        34.78        38.17         7.63 
TCGA-33-4538 TCGA-37-4133 TCGA-37-5819 TCGA-39-5031 TCGA-39-5036 TCGA-43-2578 
       97.94         7.82         3.39        27.35        35.64        22.49 
TCGA-43-6143 TCGA-46-6025 TCGA-51-4081 TCGA-60-2710 TCGA-60-2722 TCGA-60-2723 
       12.36        10.65        29.95        66.51        29.85        35.90 
TCGA-66-2754 TCGA-66-2756 TCGA-66-2773 TCGA-66-2777 
        2.01         0.99         3.02         2.01 

$`KEAP1 WILD-TYPE`
TCGA-18-3406 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 TCGA-18-3414 
       12.16        81.07         4.80        46.52        11.34        13.02 
TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 
       59.51        28.34        24.92         1.61        43.76         6.15 
TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 
        2.79        90.51         3.02       119.54        46.88        60.89 
TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 
       15.55         9.30        31.63        41.69        33.93        10.82 
TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 
        7.33         4.31         1.74        14.10        27.02        20.45 
TCGA-22-4593 TCGA-22-4595 TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 
       35.08        24.13        34.75        13.12        19.30        11.77 
TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 
       31.73        64.90        63.52        14.60        44.22         0.79 
TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 
       71.34        11.74        30.08        62.86        56.32        16.60 
TCGA-33-4533 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 
      114.05        43.10       173.79       103.53       141.34        14.07 
TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 
       19.76         2.63        61.61        32.84        50.24        67.79 
TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 
       56.38         9.04        23.24        12.00        14.07        30.94 
TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4135 TCGA-37-4141 
       18.12         4.96         3.95         0.43         6.81         0.39 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 
       74.07        44.71        68.58        55.17        70.03        60.76 
TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5035 TCGA-39-5037 TCGA-39-5039 
        1.71        24.33         1.94        15.58        35.70        17.88 
TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 
       27.02        33.07        11.47        24.89        10.19         5.42 
TCGA-46-3768 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-56-1622 TCGA-56-5897 
        9.96        13.87         0.39         0.39        28.93         0.10 
TCGA-56-5898 TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 
       18.25         2.04         1.02        10.22        21.70        80.42 
TCGA-60-2709 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 
       49.48        41.39         9.01        56.91        35.34        42.61 
TCGA-60-2720 TCGA-60-2721 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 
        3.16        32.28        23.57        26.79        11.77        16.96 
TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2755 TCGA-66-2757 TCGA-66-2758 
       43.10        21.07         0.99         0.92         0.99        20.98 
TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 
       25.02         0.99         2.01         1.02         2.01         2.01 
TCGA-66-2770 TCGA-66-2771 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 
       23.01        19.00        19.00        12.03         3.98        12.00 
TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 
       24.95         1.94        25.97        40.01        22.98         4.04 
TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 
        5.03        30.02        10.06        54.08         4.01        49.05 
TCGA-85-6560 TCGA-85-6561 
        0.36         0.79 

  KEAP1 MUTATED KEAP1 WILD-TYPE 
           0.99            0.10 
  KEAP1 MUTATED KEAP1 WILD-TYPE 
          97.94          173.79 
  KEAP1 MUTATED KEAP1 WILD-TYPE 
         24.825          19.530 
[1] "1.0 - 97.9 (24.8)"  "0.1 - 173.8 (19.5)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-5898 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-56-6545      TCGA-56-6546      TCGA-60-2698      TCGA-60-2707 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-60-2708      TCGA-60-2709      TCGA-60-2710      TCGA-60-2711 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" 
     TCGA-60-2712      TCGA-60-2713      TCGA-60-2715      TCGA-60-2719 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-60-2720      TCGA-60-2721      TCGA-60-2722      TCGA-60-2723 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED"   "KEAP1 MUTATED" 
     TCGA-60-2724      TCGA-60-2725      TCGA-60-2726      TCGA-66-2727 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-66-2734      TCGA-66-2742      TCGA-66-2744      TCGA-66-2754 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" 
     TCGA-66-2755      TCGA-66-2756      TCGA-66-2757      TCGA-66-2758 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-66-2759      TCGA-66-2763      TCGA-66-2765      TCGA-66-2766 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-66-2767      TCGA-66-2768      TCGA-66-2770      TCGA-66-2771 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-66-2773      TCGA-66-2777      TCGA-66-2778      TCGA-66-2780 
  "KEAP1 MUTATED"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-66-2781      TCGA-66-2782      TCGA-66-2783      TCGA-66-2785 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-66-2786      TCGA-66-2787      TCGA-66-2788      TCGA-66-2789 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-66-2791      TCGA-66-2792      TCGA-66-2793      TCGA-66-2794 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-66-2795      TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-5898 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-56-6545      TCGA-56-6546      TCGA-60-2698      TCGA-60-2707 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-60-2708      TCGA-60-2709      TCGA-60-2710      TCGA-60-2711 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" 
     TCGA-60-2712      TCGA-60-2713      TCGA-60-2715      TCGA-60-2719 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-60-2720      TCGA-60-2721      TCGA-60-2722      TCGA-60-2723 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED"   "KEAP1 MUTATED" 
     TCGA-60-2724      TCGA-60-2725      TCGA-60-2726      TCGA-66-2727 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-66-2734      TCGA-66-2742      TCGA-66-2744      TCGA-66-2754 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" 
     TCGA-66-2755      TCGA-66-2756      TCGA-66-2757      TCGA-66-2758 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-66-2759      TCGA-66-2763      TCGA-66-2765      TCGA-66-2766 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-66-2767      TCGA-66-2768      TCGA-66-2770      TCGA-66-2771 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-66-2773      TCGA-66-2777      TCGA-66-2778      TCGA-66-2780 
  "KEAP1 MUTATED"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-66-2781      TCGA-66-2782      TCGA-66-2783      TCGA-66-2785 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-66-2786      TCGA-66-2787      TCGA-66-2788      TCGA-66-2789 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-66-2791      TCGA-66-2792      TCGA-66-2793      TCGA-66-2794 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-66-2795      TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-5898 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-56-6545      TCGA-56-6546      TCGA-60-2698      TCGA-60-2707 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-60-2708      TCGA-60-2709      TCGA-60-2710      TCGA-60-2711 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" 
     TCGA-60-2712      TCGA-60-2713      TCGA-60-2715      TCGA-60-2719 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-60-2720      TCGA-60-2721      TCGA-60-2722      TCGA-60-2723 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED"   "KEAP1 MUTATED" 
     TCGA-60-2724      TCGA-60-2725      TCGA-60-2726      TCGA-66-2727 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-66-2734      TCGA-66-2742      TCGA-66-2744      TCGA-66-2754 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" 
     TCGA-66-2755      TCGA-66-2756      TCGA-66-2757      TCGA-66-2758 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-66-2759      TCGA-66-2763      TCGA-66-2765      TCGA-66-2766 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-66-2767      TCGA-66-2768      TCGA-66-2770      TCGA-66-2771 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-66-2773      TCGA-66-2777      TCGA-66-2778      TCGA-66-2780 
  "KEAP1 MUTATED"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-66-2781      TCGA-66-2782      TCGA-66-2783      TCGA-66-2785 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-66-2786      TCGA-66-2787      TCGA-66-2788      TCGA-66-2789 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-66-2791      TCGA-66-2792      TCGA-66-2793      TCGA-66-2794 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-66-2795      TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
[1] "hr=" "1.4"
D6V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  KEAP1 MUTATED          2        9         1         4          3          2
  KEAP1 WILD-TYPE       25       60        12        22         21         12
                 vv
clus              STAGE IV
  KEAP1 MUTATED          0
  KEAP1 WILD-TYPE        3
D6V3, multiclass
                 vv
clus               T1  T2  T3  T4
  KEAP1 MUTATED     4  16   0   2
  KEAP1 WILD-TYPE  31 100  14  10
D6V4, multiclass
    clus
vv   KEAP1 MUTATED KEAP1 WILD-TYPE
  T1             4              31
  T2            16             100
  T3             0              14
  T4             2              10
                 vv
clus               N0  N1  N2  N3
  KEAP1 MUTATED    14   5   3   0
  KEAP1 WILD-TYPE 102  34  14   5
D6V5, multiclass
    clus
vv   KEAP1 MUTATED KEAP1 WILD-TYPE
  N0            14             102
  N1             5              34
  N2             3              14
  N3             0               5
                 vv
clus               M0  M1  MX
  KEAP1 MUTATED    22   0   0
  KEAP1 WILD-TYPE 142   3   6
D6V6, multiclass
    clus
vv   KEAP1 MUTATED KEAP1 WILD-TYPE
  M0            22             142
  M1             0               3
  MX             0               6
D6V7, binary
                 cls
clus                0   1
  KEAP1 MUTATED     5  17
  KEAP1 WILD-TYPE  41 114
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KEAP1 MUTATED      5   17
  KEAP1 WILD-TYPE   41  114
        clus
vv       KEAP1 MUTATED KEAP1 WILD-TYPE
  FEMALE             5              41
  MALE              17             114
D6V8, continuous
                 vv
clus              LUNG BASALOID SQUAMOUS CELL CARCINOMA
  KEAP1 MUTATED                                       2
  KEAP1 WILD-TYPE                                     3
                 vv
clus              LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  KEAP1 MUTATED                                        0
  KEAP1 WILD-TYPE                                      1
                 vv
clus              LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  KEAP1 MUTATED                                                            20
  KEAP1 WILD-TYPE                                                         151
D6V9, multiclass
                                                             clus
vv                                                            KEAP1 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   2
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            20
                                                             clus
vv                                                            KEAP1 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     3
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             151
D6V10, binary
                 cls
clus                0   1
  KEAP1 MUTATED     0  22
  KEAP1 WILD-TYPE   4 151
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KEAP1 MUTATED      0   22
  KEAP1 WILD-TYPE    4  151
     clus
vv    KEAP1 MUTATED KEAP1 WILD-TYPE
  NO              0               4
  YES            22             151
D6V11, continuous
D6V12, continuous
                 vv
clus               R0  R1  R2  RX
  KEAP1 MUTATED    19   0   0   2
  KEAP1 WILD-TYPE 127   2   4   8
D6V13, multiclass
    clus
vv   KEAP1 MUTATED KEAP1 WILD-TYPE
  R0            19             127
  R1             0               2
  R2             0               4
  RX             2               8

Clustering(7) Variable = MLL2 MUTATION ANALYSIS
D7V1, survival
                sevent
clus2             0  1
  MLL2 MUTATED   16 16
  MLL2 WILD-TYPE 77 59
  MLL2 MUTATED MLL2 WILD-TYPE 
            32            136 
  MLL2 MUTATED MLL2 WILD-TYPE 
            16             59 
$`MLL2 MUTATED`
TCGA-18-3411 TCGA-18-3414 TCGA-18-3416 TCGA-18-4083 TCGA-21-1078 TCGA-22-1002 
       46.52        13.02        28.34         6.15        15.55         4.31 
TCGA-22-1016 TCGA-22-4599 TCGA-22-5473 TCGA-22-5477 TCGA-22-5482 TCGA-33-4538 
       27.02        38.17        63.52        44.22        11.74        97.94 
TCGA-34-2596 TCGA-34-5927 TCGA-34-5928 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 
        2.63        30.94        18.12         0.43         7.82         6.81 
TCGA-39-5027 TCGA-39-5030 TCGA-39-5036 TCGA-43-3394 TCGA-56-5897 TCGA-56-6545 
       60.76         1.94        35.64        27.02         0.10         2.04 
TCGA-60-2698 TCGA-60-2726 TCGA-66-2727 TCGA-66-2744 TCGA-66-2765 TCGA-66-2767 
       10.22        11.77        16.96         0.99         2.01         2.01 
TCGA-66-2768 TCGA-66-2773 
        2.01         3.02 

$`MLL2 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3412 
       12.16         4.47        81.07        79.46         4.80        11.34 
TCGA-18-3415 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4086 TCGA-18-4721 
       59.51        24.92         1.61        43.76         2.79        90.51 
TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 
        3.02        27.16       119.54        46.88        60.89        34.78 
TCGA-21-1081 TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 
        9.30        31.63        41.69        33.93        10.82         7.33 
TCGA-22-1011 TCGA-22-1012 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4601 
        1.74        14.10        20.45        35.08        24.13        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5474 
       13.12        19.30        11.77        31.73        64.90        14.60 
TCGA-22-5478 TCGA-22-5480 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 
        0.79        71.34        30.08        62.86        56.32        16.60 
TCGA-33-4532 TCGA-33-4533 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 
        7.63       114.05        43.10       173.79       103.53       141.34 
TCGA-33-4586 TCGA-33-6737 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 
       14.07        19.76        61.61        32.84        50.24        67.79 
TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5929 
       56.38         9.04        23.24        12.00        14.07         4.96 
TCGA-37-3783 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 
        3.95         0.39         3.39        74.07        44.71        68.58 
TCGA-39-5022 TCGA-39-5024 TCGA-39-5028 TCGA-39-5029 TCGA-39-5031 TCGA-39-5035 
       55.17        70.03         1.71        24.33        27.35        15.58 
TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 
       35.70        17.88        22.49        33.07        11.47        12.36 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 
       24.89        10.19         5.42         9.96        10.65        13.87 
TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5898 TCGA-56-6546 
        0.39         0.39        29.95        28.93        18.25         1.02 
TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 
       21.70        80.42        49.48        66.51        41.39         9.01 
TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 
       56.91        35.34        42.61         3.16        32.28        29.85 
TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-66-2734 TCGA-66-2742 TCGA-66-2754 
       35.90        23.57        26.79        43.10        21.07         2.01 
TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 
        0.92         0.99         0.99        20.98        25.02         0.99 
TCGA-66-2766 TCGA-66-2770 TCGA-66-2771 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 
        1.02        23.01        19.00         2.01        19.00        12.03 
TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 
        3.98        12.00        24.95         1.94        25.97        40.01 
TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 
       22.98         4.04         5.03        30.02        10.06        54.08 
TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
        4.01        49.05         0.36         0.79 

  MLL2 MUTATED MLL2 WILD-TYPE 
          0.10           0.36 
  MLL2 MUTATED MLL2 WILD-TYPE 
         97.94         173.79 
  MLL2 MUTATED MLL2 WILD-TYPE 
        11.755         22.735 
[1] "0.1 - 97.9 (11.8)"  "0.4 - 173.8 (22.7)"
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"MLL2 WILD-TYPE" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"MLL2 WILD-TYPE"   "MLL2 MUTATED" "MLL2 WILD-TYPE"   "MLL2 MUTATED" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"MLL2 WILD-TYPE"   "MLL2 MUTATED" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"MLL2 WILD-TYPE"   "MLL2 MUTATED" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
"MLL2 WILD-TYPE" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"MLL2 WILD-TYPE" "MLL2 WILD-TYPE"   "MLL2 MUTATED" "MLL2 WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"MLL2 WILD-TYPE" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"MLL2 WILD-TYPE"   "MLL2 MUTATED" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
  "MLL2 MUTATED" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
  "MLL2 MUTATED" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"MLL2 WILD-TYPE" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE"   "MLL2 MUTATED" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"MLL2 WILD-TYPE"   "MLL2 MUTATED" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
  "MLL2 MUTATED" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"MLL2 WILD-TYPE" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE"   "MLL2 MUTATED" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"MLL2 WILD-TYPE" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"MLL2 WILD-TYPE" "MLL2 WILD-TYPE"   "MLL2 MUTATED" "MLL2 WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"MLL2 WILD-TYPE" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"MLL2 WILD-TYPE" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
  "MLL2 MUTATED"   "MLL2 MUTATED" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
  "MLL2 MUTATED"   "MLL2 MUTATED"   "MLL2 MUTATED" "MLL2 WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"MLL2 WILD-TYPE" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"MLL2 WILD-TYPE" "MLL2 WILD-TYPE"   "MLL2 MUTATED" "MLL2 WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"MLL2 WILD-TYPE"   "MLL2 MUTATED" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
  "MLL2 MUTATED" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
  "MLL2 MUTATED" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"MLL2 WILD-TYPE" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"MLL2 WILD-TYPE" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-5898 
"MLL2 WILD-TYPE" "MLL2 WILD-TYPE"   "MLL2 MUTATED" "MLL2 WILD-TYPE" 
    TCGA-56-6545     TCGA-56-6546     TCGA-60-2698     TCGA-60-2707 
  "MLL2 MUTATED" "MLL2 WILD-TYPE"   "MLL2 MUTATED" "MLL2 WILD-TYPE" 
    TCGA-60-2708     TCGA-60-2709     TCGA-60-2710     TCGA-60-2711 
"MLL2 WILD-TYPE" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" 
    TCGA-60-2712     TCGA-60-2713     TCGA-60-2715     TCGA-60-2719 
"MLL2 WILD-TYPE" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" 
    TCGA-60-2720     TCGA-60-2721     TCGA-60-2722     TCGA-60-2723 
"MLL2 WILD-TYPE" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" 
    TCGA-60-2724     TCGA-60-2725     TCGA-60-2726     TCGA-66-2727 
"MLL2 WILD-TYPE" "MLL2 WILD-TYPE"   "MLL2 MUTATED"   "MLL2 MUTATED" 
    TCGA-66-2734     TCGA-66-2742     TCGA-66-2744     TCGA-66-2754 
"MLL2 WILD-TYPE" "MLL2 WILD-TYPE"   "MLL2 MUTATED" "MLL2 WILD-TYPE" 
    TCGA-66-2755     TCGA-66-2756     TCGA-66-2757     TCGA-66-2758 
"MLL2 WILD-TYPE" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" 
    TCGA-66-2759     TCGA-66-2763     TCGA-66-2765     TCGA-66-2766 
"MLL2 WILD-TYPE" "MLL2 WILD-TYPE"   "MLL2 MUTATED" "MLL2 WILD-TYPE" 
    TCGA-66-2767     TCGA-66-2768     TCGA-66-2770     TCGA-66-2771 
  "MLL2 MUTATED"   "MLL2 MUTATED" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" 
    TCGA-66-2773     TCGA-66-2777     TCGA-66-2778     TCGA-66-2780 
  "MLL2 MUTATED" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" 
    TCGA-66-2781     TCGA-66-2782     TCGA-66-2783     TCGA-66-2785 
"MLL2 WILD-TYPE" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" 
    TCGA-66-2786     TCGA-66-2787     TCGA-66-2788     TCGA-66-2789 
"MLL2 WILD-TYPE" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" 
    TCGA-66-2791     TCGA-66-2792     TCGA-66-2793     TCGA-66-2794 
"MLL2 WILD-TYPE" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" 
    TCGA-66-2795     TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"MLL2 WILD-TYPE" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"MLL2 WILD-TYPE" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"MLL2 WILD-TYPE"   "MLL2 MUTATED" "MLL2 WILD-TYPE"   "MLL2 MUTATED" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"MLL2 WILD-TYPE"   "MLL2 MUTATED" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"MLL2 WILD-TYPE"   "MLL2 MUTATED" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
"MLL2 WILD-TYPE" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"MLL2 WILD-TYPE" "MLL2 WILD-TYPE"   "MLL2 MUTATED" "MLL2 WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"MLL2 WILD-TYPE" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"MLL2 WILD-TYPE"   "MLL2 MUTATED" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
  "MLL2 MUTATED" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
  "MLL2 MUTATED" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"MLL2 WILD-TYPE" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE"   "MLL2 MUTATED" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"MLL2 WILD-TYPE"   "MLL2 MUTATED" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
  "MLL2 MUTATED" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"MLL2 WILD-TYPE" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE"   "MLL2 MUTATED" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"MLL2 WILD-TYPE" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"MLL2 WILD-TYPE" "MLL2 WILD-TYPE"   "MLL2 MUTATED" "MLL2 WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"MLL2 WILD-TYPE" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"MLL2 WILD-TYPE" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
  "MLL2 MUTATED"   "MLL2 MUTATED" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
  "MLL2 MUTATED"   "MLL2 MUTATED"   "MLL2 MUTATED" "MLL2 WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"MLL2 WILD-TYPE" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"MLL2 WILD-TYPE" "MLL2 WILD-TYPE"   "MLL2 MUTATED" "MLL2 WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"MLL2 WILD-TYPE"   "MLL2 MUTATED" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
  "MLL2 MUTATED" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
  "MLL2 MUTATED" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"MLL2 WILD-TYPE" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"MLL2 WILD-TYPE" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-5898 
"MLL2 WILD-TYPE" "MLL2 WILD-TYPE"   "MLL2 MUTATED" "MLL2 WILD-TYPE" 
    TCGA-56-6545     TCGA-56-6546     TCGA-60-2698     TCGA-60-2707 
  "MLL2 MUTATED" "MLL2 WILD-TYPE"   "MLL2 MUTATED" "MLL2 WILD-TYPE" 
    TCGA-60-2708     TCGA-60-2709     TCGA-60-2710     TCGA-60-2711 
"MLL2 WILD-TYPE" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" 
    TCGA-60-2712     TCGA-60-2713     TCGA-60-2715     TCGA-60-2719 
"MLL2 WILD-TYPE" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" 
    TCGA-60-2720     TCGA-60-2721     TCGA-60-2722     TCGA-60-2723 
"MLL2 WILD-TYPE" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" 
    TCGA-60-2724     TCGA-60-2725     TCGA-60-2726     TCGA-66-2727 
"MLL2 WILD-TYPE" "MLL2 WILD-TYPE"   "MLL2 MUTATED"   "MLL2 MUTATED" 
    TCGA-66-2734     TCGA-66-2742     TCGA-66-2744     TCGA-66-2754 
"MLL2 WILD-TYPE" "MLL2 WILD-TYPE"   "MLL2 MUTATED" "MLL2 WILD-TYPE" 
    TCGA-66-2755     TCGA-66-2756     TCGA-66-2757     TCGA-66-2758 
"MLL2 WILD-TYPE" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" 
    TCGA-66-2759     TCGA-66-2763     TCGA-66-2765     TCGA-66-2766 
"MLL2 WILD-TYPE" "MLL2 WILD-TYPE"   "MLL2 MUTATED" "MLL2 WILD-TYPE" 
    TCGA-66-2767     TCGA-66-2768     TCGA-66-2770     TCGA-66-2771 
  "MLL2 MUTATED"   "MLL2 MUTATED" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" 
    TCGA-66-2773     TCGA-66-2777     TCGA-66-2778     TCGA-66-2780 
  "MLL2 MUTATED" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" 
    TCGA-66-2781     TCGA-66-2782     TCGA-66-2783     TCGA-66-2785 
"MLL2 WILD-TYPE" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" 
    TCGA-66-2786     TCGA-66-2787     TCGA-66-2788     TCGA-66-2789 
"MLL2 WILD-TYPE" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" 
    TCGA-66-2791     TCGA-66-2792     TCGA-66-2793     TCGA-66-2794 
"MLL2 WILD-TYPE" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" 
    TCGA-66-2795     TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"MLL2 WILD-TYPE" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"MLL2 WILD-TYPE" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"MLL2 WILD-TYPE"   "MLL2 MUTATED" "MLL2 WILD-TYPE"   "MLL2 MUTATED" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"MLL2 WILD-TYPE"   "MLL2 MUTATED" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"MLL2 WILD-TYPE"   "MLL2 MUTATED" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
"MLL2 WILD-TYPE" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"MLL2 WILD-TYPE" "MLL2 WILD-TYPE"   "MLL2 MUTATED" "MLL2 WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"MLL2 WILD-TYPE" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"MLL2 WILD-TYPE"   "MLL2 MUTATED" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
  "MLL2 MUTATED" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
  "MLL2 MUTATED" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"MLL2 WILD-TYPE" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE"   "MLL2 MUTATED" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"MLL2 WILD-TYPE"   "MLL2 MUTATED" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
  "MLL2 MUTATED" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"MLL2 WILD-TYPE" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE"   "MLL2 MUTATED" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"MLL2 WILD-TYPE" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"MLL2 WILD-TYPE" "MLL2 WILD-TYPE"   "MLL2 MUTATED" "MLL2 WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"MLL2 WILD-TYPE" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"MLL2 WILD-TYPE" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
  "MLL2 MUTATED"   "MLL2 MUTATED" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
  "MLL2 MUTATED"   "MLL2 MUTATED"   "MLL2 MUTATED" "MLL2 WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"MLL2 WILD-TYPE" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"MLL2 WILD-TYPE" "MLL2 WILD-TYPE"   "MLL2 MUTATED" "MLL2 WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"MLL2 WILD-TYPE"   "MLL2 MUTATED" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
  "MLL2 MUTATED" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
  "MLL2 MUTATED" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"MLL2 WILD-TYPE" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"MLL2 WILD-TYPE" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-5898 
"MLL2 WILD-TYPE" "MLL2 WILD-TYPE"   "MLL2 MUTATED" "MLL2 WILD-TYPE" 
    TCGA-56-6545     TCGA-56-6546     TCGA-60-2698     TCGA-60-2707 
  "MLL2 MUTATED" "MLL2 WILD-TYPE"   "MLL2 MUTATED" "MLL2 WILD-TYPE" 
    TCGA-60-2708     TCGA-60-2709     TCGA-60-2710     TCGA-60-2711 
"MLL2 WILD-TYPE" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" 
    TCGA-60-2712     TCGA-60-2713     TCGA-60-2715     TCGA-60-2719 
"MLL2 WILD-TYPE" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" 
    TCGA-60-2720     TCGA-60-2721     TCGA-60-2722     TCGA-60-2723 
"MLL2 WILD-TYPE" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" 
    TCGA-60-2724     TCGA-60-2725     TCGA-60-2726     TCGA-66-2727 
"MLL2 WILD-TYPE" "MLL2 WILD-TYPE"   "MLL2 MUTATED"   "MLL2 MUTATED" 
    TCGA-66-2734     TCGA-66-2742     TCGA-66-2744     TCGA-66-2754 
"MLL2 WILD-TYPE" "MLL2 WILD-TYPE"   "MLL2 MUTATED" "MLL2 WILD-TYPE" 
    TCGA-66-2755     TCGA-66-2756     TCGA-66-2757     TCGA-66-2758 
"MLL2 WILD-TYPE" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" 
    TCGA-66-2759     TCGA-66-2763     TCGA-66-2765     TCGA-66-2766 
"MLL2 WILD-TYPE" "MLL2 WILD-TYPE"   "MLL2 MUTATED" "MLL2 WILD-TYPE" 
    TCGA-66-2767     TCGA-66-2768     TCGA-66-2770     TCGA-66-2771 
  "MLL2 MUTATED"   "MLL2 MUTATED" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" 
    TCGA-66-2773     TCGA-66-2777     TCGA-66-2778     TCGA-66-2780 
  "MLL2 MUTATED" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" 
    TCGA-66-2781     TCGA-66-2782     TCGA-66-2783     TCGA-66-2785 
"MLL2 WILD-TYPE" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" 
    TCGA-66-2786     TCGA-66-2787     TCGA-66-2788     TCGA-66-2789 
"MLL2 WILD-TYPE" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" 
    TCGA-66-2791     TCGA-66-2792     TCGA-66-2793     TCGA-66-2794 
"MLL2 WILD-TYPE" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" 
    TCGA-66-2795     TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"MLL2 WILD-TYPE" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" "MLL2 WILD-TYPE" 
[1] "hr=" "1.7"
D7V2, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  MLL2 MUTATED          5       13         2         7          4          3
  MLL2 WILD-TYPE       22       56        11        19         20         11
                vv
clus             STAGE IV
  MLL2 MUTATED          1
  MLL2 WILD-TYPE        2
D7V3, multiclass
                vv
clus             T1 T2 T3 T4
  MLL2 MUTATED    5 26  2  2
  MLL2 WILD-TYPE 30 90 12 10
D7V4, multiclass
    clus
vv   MLL2 MUTATED MLL2 WILD-TYPE
  T1            5             30
  T2           26             90
  T3            2             12
  T4            2             10
                vv
clus             N0 N1 N2 N3
  MLL2 MUTATED   21 10  3  1
  MLL2 WILD-TYPE 95 29 14  4
D7V5, multiclass
    clus
vv   MLL2 MUTATED MLL2 WILD-TYPE
  N0           21             95
  N1           10             29
  N2            3             14
  N3            1              4
                vv
clus              M0  M1  MX
  MLL2 MUTATED    32   1   1
  MLL2 WILD-TYPE 132   2   5
D7V6, multiclass
    clus
vv   MLL2 MUTATED MLL2 WILD-TYPE
  M0           32            132
  M1            1              2
  MX            1              5
D7V7, binary
                cls
clus               0   1
  MLL2 MUTATED     8  27
  MLL2 WILD-TYPE  38 104
[1] "tbl2"
                cls
clus             [,1] [,2]
  MLL2 MUTATED      8   27
  MLL2 WILD-TYPE   38  104
        clus
vv       MLL2 MUTATED MLL2 WILD-TYPE
  FEMALE            8             38
  MALE             27            104
D7V8, continuous
                vv
clus             LUNG BASALOID SQUAMOUS CELL CARCINOMA
  MLL2 MUTATED                                       0
  MLL2 WILD-TYPE                                     5
                vv
clus             LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  MLL2 MUTATED                                        0
  MLL2 WILD-TYPE                                      1
                vv
clus             LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  MLL2 MUTATED                                                            35
  MLL2 WILD-TYPE                                                         136
D7V9, multiclass
                                                             clus
vv                                                            MLL2 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                  0
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                 0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)           35
                                                             clus
vv                                                            MLL2 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    5
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                   1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            136
D7V10, binary
                cls
clus               0   1
  MLL2 MUTATED     0  35
  MLL2 WILD-TYPE   4 138
[1] "tbl2"
                cls
clus             [,1] [,2]
  MLL2 MUTATED      0   35
  MLL2 WILD-TYPE    4  138
     clus
vv    MLL2 MUTATED MLL2 WILD-TYPE
  NO             0              4
  YES           35            138
D7V11, continuous
D7V12, continuous
                vv
clus              R0  R1  R2  RX
  MLL2 MUTATED    29   0   0   3
  MLL2 WILD-TYPE 117   2   4   7
D7V13, multiclass
    clus
vv   MLL2 MUTATED MLL2 WILD-TYPE
  R0           29            117
  R1            0              2
  R2            0              4
  RX            3              7

Clustering(8) Variable = CSMD3 MUTATION ANALYSIS
D8V1, survival
                 sevent
clus2              0  1
  CSMD3 MUTATED   46 31
  CSMD3 WILD-TYPE 47 44
  CSMD3 MUTATED CSMD3 WILD-TYPE 
             77              91 
  CSMD3 MUTATED CSMD3 WILD-TYPE 
             31              44 
$`CSMD3 MUTATED`
TCGA-18-3409 TCGA-18-3414 TCGA-18-3417 TCGA-18-3419 TCGA-18-4083 TCGA-18-4721 
       79.46        13.02        24.92         1.61         6.15        90.51 
TCGA-18-5592 TCGA-21-1070 TCGA-21-1071 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 
        3.02       119.54        46.88        41.69        33.93        10.82 
TCGA-22-0944 TCGA-22-1016 TCGA-22-4593 TCGA-22-4599 TCGA-22-4604 TCGA-22-4613 
        7.33        27.02        35.08        38.17        13.12        11.77 
TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5482 TCGA-22-5491 TCGA-33-4533 
       31.73        64.90        63.52        11.74        56.32       114.05 
TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-6737 TCGA-34-2608 
       43.10       173.79       103.53       141.34        19.76        32.84 
TCGA-34-5231 TCGA-34-5232 TCGA-34-5236 TCGA-34-5927 TCGA-37-3789 TCGA-37-4133 
       50.24        67.79         9.04        30.94         0.43         7.82 
TCGA-37-5819 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5036 TCGA-39-5039 
        3.39        70.03        60.76         1.71        35.64        17.88 
TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-51-4079 TCGA-51-4080 
       22.49        27.02        33.07        11.47         0.39         0.39 
TCGA-56-6545 TCGA-60-2698 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2713 
        2.04        10.22        49.48        66.51        41.39        56.91 
TCGA-60-2715 TCGA-60-2720 TCGA-66-2742 TCGA-66-2744 TCGA-66-2756 TCGA-66-2757 
       35.34         3.16        21.07         0.99         0.99         0.99 
TCGA-66-2758 TCGA-66-2763 TCGA-66-2767 TCGA-66-2768 TCGA-66-2771 TCGA-66-2773 
       20.98         0.99         2.01         2.01        19.00         3.02 
TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 
       19.00        12.03         3.98        24.95         1.94        25.97 
TCGA-66-2787 TCGA-66-2789 TCGA-66-2795 TCGA-66-2800 TCGA-85-6561 
       40.01         4.04         4.01        49.05         0.79 

$`CSMD3 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07         4.80        46.52        11.34 
TCGA-18-3415 TCGA-18-3416 TCGA-18-3421 TCGA-18-4086 TCGA-18-5595 TCGA-21-1076 
       59.51        28.34        43.76         2.79        27.16        60.89 
TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 TCGA-22-1002 TCGA-22-1011 
       34.78        15.55         9.30        31.63         4.31         1.74 
TCGA-22-1012 TCGA-22-4591 TCGA-22-4595 TCGA-22-4601 TCGA-22-4607 TCGA-22-5474 
       14.10        20.45        24.13        34.75        19.30        14.60 
TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5485 TCGA-22-5489 TCGA-22-5492 
       44.22         0.79        71.34        30.08        62.86        16.60 
TCGA-33-4532 TCGA-33-4538 TCGA-33-4586 TCGA-34-2596 TCGA-34-2600 TCGA-34-5234 
        7.63        97.94        14.07         2.63        61.61        56.38 
TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 
       23.24        12.00        14.07        18.12         4.96         3.95 
TCGA-37-4135 TCGA-37-4141 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 
        6.81         0.39        74.07        44.71        68.58        55.17 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5037 TCGA-43-6143 
       24.33         1.94        27.35        15.58        35.70        12.36 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 
       24.89        10.19         5.42         9.96        10.65        13.87 
TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-5898 TCGA-56-6546 TCGA-60-2707 
       29.95        28.93         0.10        18.25         1.02        21.70 
TCGA-60-2708 TCGA-60-2712 TCGA-60-2719 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 
       80.42         9.01        42.61        32.28        29.85        35.90 
TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2754 
       23.57        26.79        11.77        16.96        43.10         2.01 
TCGA-66-2755 TCGA-66-2759 TCGA-66-2765 TCGA-66-2766 TCGA-66-2770 TCGA-66-2777 
        0.92        25.02         2.01         1.02        23.01         2.01 
TCGA-66-2782 TCGA-66-2788 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 
       12.00        22.98         5.03        30.02        10.06        54.08 
TCGA-85-6560 
        0.36 

  CSMD3 MUTATED CSMD3 WILD-TYPE 
           0.39            0.10 
  CSMD3 MUTATED CSMD3 WILD-TYPE 
         173.79           97.94 
  CSMD3 MUTATED CSMD3 WILD-TYPE 
          21.07           18.25 
[1] "0.4 - 173.8 (21.1)" "0.1 - 97.9 (18.2)" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED"   "CSMD3 MUTATED" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED"   "CSMD3 MUTATED" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED"   "CSMD3 MUTATED"   "CSMD3 MUTATED" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
  "CSMD3 MUTATED"   "CSMD3 MUTATED"   "CSMD3 MUTATED"   "CSMD3 MUTATED" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
  "CSMD3 MUTATED"   "CSMD3 MUTATED"   "CSMD3 MUTATED"   "CSMD3 MUTATED" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
  "CSMD3 MUTATED"   "CSMD3 MUTATED"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
  "CSMD3 MUTATED"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED"   "CSMD3 MUTATED"   "CSMD3 MUTATED" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED"   "CSMD3 MUTATED" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
  "CSMD3 MUTATED"   "CSMD3 MUTATED"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED"   "CSMD3 MUTATED" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-5898 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-56-6545      TCGA-56-6546      TCGA-60-2698      TCGA-60-2707 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" 
     TCGA-60-2708      TCGA-60-2709      TCGA-60-2710      TCGA-60-2711 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED"   "CSMD3 MUTATED"   "CSMD3 MUTATED" 
     TCGA-60-2712      TCGA-60-2713      TCGA-60-2715      TCGA-60-2719 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" 
     TCGA-60-2720      TCGA-60-2721      TCGA-60-2722      TCGA-60-2723 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-60-2724      TCGA-60-2725      TCGA-60-2726      TCGA-66-2727 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-66-2734      TCGA-66-2742      TCGA-66-2744      TCGA-66-2754 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" 
     TCGA-66-2755      TCGA-66-2756      TCGA-66-2757      TCGA-66-2758 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED"   "CSMD3 MUTATED"   "CSMD3 MUTATED" 
     TCGA-66-2759      TCGA-66-2763      TCGA-66-2765      TCGA-66-2766 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-66-2767      TCGA-66-2768      TCGA-66-2770      TCGA-66-2771 
  "CSMD3 MUTATED"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" 
     TCGA-66-2773      TCGA-66-2777      TCGA-66-2778      TCGA-66-2780 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED"   "CSMD3 MUTATED" 
     TCGA-66-2781      TCGA-66-2782      TCGA-66-2783      TCGA-66-2785 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED"   "CSMD3 MUTATED" 
     TCGA-66-2786      TCGA-66-2787      TCGA-66-2788      TCGA-66-2789 
  "CSMD3 MUTATED"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" 
     TCGA-66-2791      TCGA-66-2792      TCGA-66-2793      TCGA-66-2794 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-66-2795      TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
  "CSMD3 MUTATED"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED"   "CSMD3 MUTATED" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED"   "CSMD3 MUTATED" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED"   "CSMD3 MUTATED"   "CSMD3 MUTATED" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
  "CSMD3 MUTATED"   "CSMD3 MUTATED"   "CSMD3 MUTATED"   "CSMD3 MUTATED" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
  "CSMD3 MUTATED"   "CSMD3 MUTATED"   "CSMD3 MUTATED"   "CSMD3 MUTATED" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
  "CSMD3 MUTATED"   "CSMD3 MUTATED"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
  "CSMD3 MUTATED"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED"   "CSMD3 MUTATED"   "CSMD3 MUTATED" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED"   "CSMD3 MUTATED" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
  "CSMD3 MUTATED"   "CSMD3 MUTATED"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED"   "CSMD3 MUTATED" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-5898 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-56-6545      TCGA-56-6546      TCGA-60-2698      TCGA-60-2707 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" 
     TCGA-60-2708      TCGA-60-2709      TCGA-60-2710      TCGA-60-2711 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED"   "CSMD3 MUTATED"   "CSMD3 MUTATED" 
     TCGA-60-2712      TCGA-60-2713      TCGA-60-2715      TCGA-60-2719 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" 
     TCGA-60-2720      TCGA-60-2721      TCGA-60-2722      TCGA-60-2723 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-60-2724      TCGA-60-2725      TCGA-60-2726      TCGA-66-2727 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-66-2734      TCGA-66-2742      TCGA-66-2744      TCGA-66-2754 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" 
     TCGA-66-2755      TCGA-66-2756      TCGA-66-2757      TCGA-66-2758 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED"   "CSMD3 MUTATED"   "CSMD3 MUTATED" 
     TCGA-66-2759      TCGA-66-2763      TCGA-66-2765      TCGA-66-2766 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-66-2767      TCGA-66-2768      TCGA-66-2770      TCGA-66-2771 
  "CSMD3 MUTATED"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" 
     TCGA-66-2773      TCGA-66-2777      TCGA-66-2778      TCGA-66-2780 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED"   "CSMD3 MUTATED" 
     TCGA-66-2781      TCGA-66-2782      TCGA-66-2783      TCGA-66-2785 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED"   "CSMD3 MUTATED" 
     TCGA-66-2786      TCGA-66-2787      TCGA-66-2788      TCGA-66-2789 
  "CSMD3 MUTATED"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" 
     TCGA-66-2791      TCGA-66-2792      TCGA-66-2793      TCGA-66-2794 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-66-2795      TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
  "CSMD3 MUTATED"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED"   "CSMD3 MUTATED" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED"   "CSMD3 MUTATED" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED"   "CSMD3 MUTATED"   "CSMD3 MUTATED" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
  "CSMD3 MUTATED"   "CSMD3 MUTATED"   "CSMD3 MUTATED"   "CSMD3 MUTATED" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
  "CSMD3 MUTATED"   "CSMD3 MUTATED"   "CSMD3 MUTATED"   "CSMD3 MUTATED" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
  "CSMD3 MUTATED"   "CSMD3 MUTATED"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
  "CSMD3 MUTATED"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED"   "CSMD3 MUTATED"   "CSMD3 MUTATED" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED"   "CSMD3 MUTATED" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
  "CSMD3 MUTATED"   "CSMD3 MUTATED"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED"   "CSMD3 MUTATED" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-5898 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-56-6545      TCGA-56-6546      TCGA-60-2698      TCGA-60-2707 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" 
     TCGA-60-2708      TCGA-60-2709      TCGA-60-2710      TCGA-60-2711 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED"   "CSMD3 MUTATED"   "CSMD3 MUTATED" 
     TCGA-60-2712      TCGA-60-2713      TCGA-60-2715      TCGA-60-2719 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" 
     TCGA-60-2720      TCGA-60-2721      TCGA-60-2722      TCGA-60-2723 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-60-2724      TCGA-60-2725      TCGA-60-2726      TCGA-66-2727 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-66-2734      TCGA-66-2742      TCGA-66-2744      TCGA-66-2754 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" 
     TCGA-66-2755      TCGA-66-2756      TCGA-66-2757      TCGA-66-2758 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED"   "CSMD3 MUTATED"   "CSMD3 MUTATED" 
     TCGA-66-2759      TCGA-66-2763      TCGA-66-2765      TCGA-66-2766 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-66-2767      TCGA-66-2768      TCGA-66-2770      TCGA-66-2771 
  "CSMD3 MUTATED"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" 
     TCGA-66-2773      TCGA-66-2777      TCGA-66-2778      TCGA-66-2780 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED"   "CSMD3 MUTATED" 
     TCGA-66-2781      TCGA-66-2782      TCGA-66-2783      TCGA-66-2785 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED"   "CSMD3 MUTATED" 
     TCGA-66-2786      TCGA-66-2787      TCGA-66-2788      TCGA-66-2789 
  "CSMD3 MUTATED"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" 
     TCGA-66-2791      TCGA-66-2792      TCGA-66-2793      TCGA-66-2794 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-66-2795      TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
  "CSMD3 MUTATED"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" 
[1] "hr=" "1.5"
D8V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  CSMD3 MUTATED         13       31         8         9          7          9
  CSMD3 WILD-TYPE       14       38         5        17         17          5
                 vv
clus              STAGE IV
  CSMD3 MUTATED          3
  CSMD3 WILD-TYPE        0
D8V3, multiclass
                 vv
clus              T1 T2 T3 T4
  CSMD3 MUTATED   18 49  6  8
  CSMD3 WILD-TYPE 17 67  8  4
D8V4, multiclass
    clus
vv   CSMD3 MUTATED CSMD3 WILD-TYPE
  T1            18              17
  T2            49              67
  T3             6               8
  T4             8               4
                 vv
clus              N0 N1 N2 N3
  CSMD3 MUTATED   56 17  4  4
  CSMD3 WILD-TYPE 60 22 13  1
D8V5, multiclass
    clus
vv   CSMD3 MUTATED CSMD3 WILD-TYPE
  N0            56              60
  N1            17              22
  N2             4              13
  N3             4               1
                 vv
clus              M0 M1 MX
  CSMD3 MUTATED   74  3  1
  CSMD3 WILD-TYPE 90  0  5
D8V6, multiclass
    clus
vv   CSMD3 MUTATED CSMD3 WILD-TYPE
  M0            74              90
  M1             3               0
  MX             1               5
D8V7, binary
                 cls
clus               0  1
  CSMD3 MUTATED   19 62
  CSMD3 WILD-TYPE 27 69
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CSMD3 MUTATED     19   62
  CSMD3 WILD-TYPE   27   69
        clus
vv       CSMD3 MUTATED CSMD3 WILD-TYPE
  FEMALE            19              27
  MALE              62              69
D8V8, continuous
                 vv
clus              LUNG BASALOID SQUAMOUS CELL CARCINOMA
  CSMD3 MUTATED                                       2
  CSMD3 WILD-TYPE                                     3
                 vv
clus              LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  CSMD3 MUTATED                                        1
  CSMD3 WILD-TYPE                                      0
                 vv
clus              LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  CSMD3 MUTATED                                                            78
  CSMD3 WILD-TYPE                                                          93
D8V9, multiclass
                                                             clus
vv                                                            CSMD3 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   2
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                  1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            78
                                                             clus
vv                                                            CSMD3 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     3
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                    0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              93
D8V10, binary
                 cls
clus               0  1
  CSMD3 MUTATED    2 79
  CSMD3 WILD-TYPE  2 94
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CSMD3 MUTATED      2   79
  CSMD3 WILD-TYPE    2   94
     clus
vv    CSMD3 MUTATED CSMD3 WILD-TYPE
  NO              2               2
  YES            79              94
D8V11, continuous
D8V12, continuous
                 vv
clus              R0 R1 R2 RX
  CSMD3 MUTATED   66  1  3  4
  CSMD3 WILD-TYPE 80  1  1  6
D8V13, multiclass
    clus
vv   CSMD3 MUTATED CSMD3 WILD-TYPE
  R0            66              80
  R1             1               1
  R2             3               1
  RX             4               6

Clustering(9) Variable = RB1 MUTATION ANALYSIS
D9V1, survival
               sevent
clus2            0  1
  RB1 MUTATED    6  6
  RB1 WILD-TYPE 87 69
  RB1 MUTATED RB1 WILD-TYPE 
           12           156 
  RB1 MUTATED RB1 WILD-TYPE 
            6            69 
$`RB1 MUTATED`
TCGA-18-4086 TCGA-22-4601 TCGA-22-4607 TCGA-33-4533 TCGA-34-5240 TCGA-39-5021 
        2.79        34.75        19.30       114.05        12.00        68.58 
TCGA-39-5031 TCGA-43-2578 TCGA-43-6143 TCGA-56-1622 TCGA-66-2754 TCGA-66-2783 
       27.35        22.49        12.36        28.93         2.01        24.95 

$`RB1 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
       43.76         6.15        90.51         3.02        27.16       119.54 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 
       46.88        60.89        34.78        15.55         9.30        31.63 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 
       41.69        33.93        10.82         7.33         4.31         1.74 
TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 
       14.10        27.02        20.45        35.08        24.13        38.17 
TCGA-22-4604 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 
       13.12        11.77        31.73        64.90        63.52        14.60 
TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 
       44.22         0.79        71.34        11.74        30.08        62.86 
TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 
       56.32        16.60         7.63        97.94        43.10       173.79 
TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 
      103.53       141.34        14.07        19.76         2.63        61.61 
TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 
       32.84        50.24        67.79        56.38         9.04        23.24 
TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 
       14.07        30.94        18.12         4.96         3.95         0.43 
TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 
        7.82         6.81         0.39         3.39        74.07        44.71 
TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 
       55.17        70.03        60.76         1.71        24.33         1.94 
TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-3394 TCGA-43-3920 
       15.58        35.64        35.70        17.88        27.02        33.07 
TCGA-43-5668 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 
       11.47        24.89        10.19         5.42         9.96        10.65 
TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-5897 TCGA-56-5898 
       13.87         0.39         0.39        29.95         0.10        18.25 
TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 
        2.04         1.02        10.22        21.70        80.42        49.48 
TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 
       66.51        41.39         9.01        56.91        35.34        42.61 
TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 
        3.16        32.28        29.85        35.90        23.57        26.79 
TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2755 
       11.77        16.96        43.10        21.07         0.99         0.92 
TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 
        0.99         0.99        20.98        25.02         0.99         2.01 
TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 
        1.02         2.01         2.01        23.01        19.00         3.02 
TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2785 
        2.01        19.00        12.03         3.98        12.00         1.94 
TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 
       25.97        40.01        22.98         4.04         5.03        30.02 
TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       10.06        54.08         4.01        49.05         0.36         0.79 

  RB1 MUTATED RB1 WILD-TYPE 
         2.01          0.10 
  RB1 MUTATED RB1 WILD-TYPE 
       114.05        173.79 
  RB1 MUTATED RB1 WILD-TYPE 
        23.72         19.38 
[1] "2.0 - 114.0 (23.7)" "0.1 - 173.8 (19.4)"
   TCGA-18-3406    TCGA-18-3407    TCGA-18-3408    TCGA-18-3409    TCGA-18-3410 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-18-3411    TCGA-18-3412    TCGA-18-3414    TCGA-18-3415    TCGA-18-3416 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-18-3417    TCGA-18-3419    TCGA-18-3421    TCGA-18-4083    TCGA-18-4086 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" 
   TCGA-18-4721    TCGA-18-5592    TCGA-18-5595    TCGA-21-1070    TCGA-21-1071 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-21-1076    TCGA-21-1077    TCGA-21-1078    TCGA-21-1081    TCGA-21-5782 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-21-5784    TCGA-21-5786    TCGA-21-5787    TCGA-22-0944    TCGA-22-1002 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-22-1011    TCGA-22-1012    TCGA-22-1016    TCGA-22-4591    TCGA-22-4593 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-22-4595    TCGA-22-4599    TCGA-22-4601    TCGA-22-4604    TCGA-22-4607 
"RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE"   "RB1 MUTATED" 
   TCGA-22-4613    TCGA-22-5471    TCGA-22-5472    TCGA-22-5473    TCGA-22-5474 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-22-5477    TCGA-22-5478    TCGA-22-5480    TCGA-22-5482    TCGA-22-5485 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-22-5489    TCGA-22-5491    TCGA-22-5492    TCGA-33-4532    TCGA-33-4533 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" 
   TCGA-33-4538    TCGA-33-4547    TCGA-33-4566    TCGA-33-4582    TCGA-33-4583 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-33-4586    TCGA-33-6737    TCGA-34-2596    TCGA-34-2600    TCGA-34-2608 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-34-5231    TCGA-34-5232    TCGA-34-5234    TCGA-34-5236    TCGA-34-5239 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-34-5240    TCGA-34-5241    TCGA-34-5927    TCGA-34-5928    TCGA-34-5929 
  "RB1 MUTATED" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-37-3783    TCGA-37-3789    TCGA-37-4133    TCGA-37-4135    TCGA-37-4141 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-37-5819    TCGA-39-5016    TCGA-39-5019    TCGA-39-5021    TCGA-39-5022 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE" 
   TCGA-39-5024    TCGA-39-5027    TCGA-39-5028    TCGA-39-5029    TCGA-39-5030 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-39-5031    TCGA-39-5035    TCGA-39-5036    TCGA-39-5037    TCGA-39-5039 
  "RB1 MUTATED" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-43-2578    TCGA-43-3394    TCGA-43-3920    TCGA-43-5668    TCGA-43-6143 
  "RB1 MUTATED" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" 
   TCGA-43-6647    TCGA-43-6770    TCGA-43-6771    TCGA-46-3768    TCGA-46-6025 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-46-6026    TCGA-51-4079    TCGA-51-4080    TCGA-51-4081    TCGA-56-1622 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" 
   TCGA-56-5897    TCGA-56-5898    TCGA-56-6545    TCGA-56-6546    TCGA-60-2698 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-60-2707    TCGA-60-2708    TCGA-60-2709    TCGA-60-2710    TCGA-60-2711 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-60-2712    TCGA-60-2713    TCGA-60-2715    TCGA-60-2719    TCGA-60-2720 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-60-2721    TCGA-60-2722    TCGA-60-2723    TCGA-60-2724    TCGA-60-2725 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-60-2726    TCGA-66-2727    TCGA-66-2734    TCGA-66-2742    TCGA-66-2744 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-66-2754    TCGA-66-2755    TCGA-66-2756    TCGA-66-2757    TCGA-66-2758 
  "RB1 MUTATED" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-66-2759    TCGA-66-2763    TCGA-66-2765    TCGA-66-2766    TCGA-66-2767 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-66-2768    TCGA-66-2770    TCGA-66-2771    TCGA-66-2773    TCGA-66-2777 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-66-2778    TCGA-66-2780    TCGA-66-2781    TCGA-66-2782    TCGA-66-2783 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" 
   TCGA-66-2785    TCGA-66-2786    TCGA-66-2787    TCGA-66-2788    TCGA-66-2789 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-66-2791    TCGA-66-2792    TCGA-66-2793    TCGA-66-2794    TCGA-66-2795 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-66-2800    TCGA-85-6560    TCGA-85-6561 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-18-3406    TCGA-18-3407    TCGA-18-3408    TCGA-18-3409    TCGA-18-3410 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-18-3411    TCGA-18-3412    TCGA-18-3414    TCGA-18-3415    TCGA-18-3416 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-18-3417    TCGA-18-3419    TCGA-18-3421    TCGA-18-4083    TCGA-18-4086 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" 
   TCGA-18-4721    TCGA-18-5592    TCGA-18-5595    TCGA-21-1070    TCGA-21-1071 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-21-1076    TCGA-21-1077    TCGA-21-1078    TCGA-21-1081    TCGA-21-5782 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-21-5784    TCGA-21-5786    TCGA-21-5787    TCGA-22-0944    TCGA-22-1002 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-22-1011    TCGA-22-1012    TCGA-22-1016    TCGA-22-4591    TCGA-22-4593 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-22-4595    TCGA-22-4599    TCGA-22-4601    TCGA-22-4604    TCGA-22-4607 
"RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE"   "RB1 MUTATED" 
   TCGA-22-4613    TCGA-22-5471    TCGA-22-5472    TCGA-22-5473    TCGA-22-5474 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-22-5477    TCGA-22-5478    TCGA-22-5480    TCGA-22-5482    TCGA-22-5485 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-22-5489    TCGA-22-5491    TCGA-22-5492    TCGA-33-4532    TCGA-33-4533 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" 
   TCGA-33-4538    TCGA-33-4547    TCGA-33-4566    TCGA-33-4582    TCGA-33-4583 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-33-4586    TCGA-33-6737    TCGA-34-2596    TCGA-34-2600    TCGA-34-2608 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-34-5231    TCGA-34-5232    TCGA-34-5234    TCGA-34-5236    TCGA-34-5239 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-34-5240    TCGA-34-5241    TCGA-34-5927    TCGA-34-5928    TCGA-34-5929 
  "RB1 MUTATED" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-37-3783    TCGA-37-3789    TCGA-37-4133    TCGA-37-4135    TCGA-37-4141 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-37-5819    TCGA-39-5016    TCGA-39-5019    TCGA-39-5021    TCGA-39-5022 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE" 
   TCGA-39-5024    TCGA-39-5027    TCGA-39-5028    TCGA-39-5029    TCGA-39-5030 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-39-5031    TCGA-39-5035    TCGA-39-5036    TCGA-39-5037    TCGA-39-5039 
  "RB1 MUTATED" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-43-2578    TCGA-43-3394    TCGA-43-3920    TCGA-43-5668    TCGA-43-6143 
  "RB1 MUTATED" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" 
   TCGA-43-6647    TCGA-43-6770    TCGA-43-6771    TCGA-46-3768    TCGA-46-6025 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-46-6026    TCGA-51-4079    TCGA-51-4080    TCGA-51-4081    TCGA-56-1622 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" 
   TCGA-56-5897    TCGA-56-5898    TCGA-56-6545    TCGA-56-6546    TCGA-60-2698 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-60-2707    TCGA-60-2708    TCGA-60-2709    TCGA-60-2710    TCGA-60-2711 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-60-2712    TCGA-60-2713    TCGA-60-2715    TCGA-60-2719    TCGA-60-2720 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-60-2721    TCGA-60-2722    TCGA-60-2723    TCGA-60-2724    TCGA-60-2725 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-60-2726    TCGA-66-2727    TCGA-66-2734    TCGA-66-2742    TCGA-66-2744 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-66-2754    TCGA-66-2755    TCGA-66-2756    TCGA-66-2757    TCGA-66-2758 
  "RB1 MUTATED" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-66-2759    TCGA-66-2763    TCGA-66-2765    TCGA-66-2766    TCGA-66-2767 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-66-2768    TCGA-66-2770    TCGA-66-2771    TCGA-66-2773    TCGA-66-2777 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-66-2778    TCGA-66-2780    TCGA-66-2781    TCGA-66-2782    TCGA-66-2783 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" 
   TCGA-66-2785    TCGA-66-2786    TCGA-66-2787    TCGA-66-2788    TCGA-66-2789 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-66-2791    TCGA-66-2792    TCGA-66-2793    TCGA-66-2794    TCGA-66-2795 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-66-2800    TCGA-85-6560    TCGA-85-6561 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-18-3406    TCGA-18-3407    TCGA-18-3408    TCGA-18-3409    TCGA-18-3410 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-18-3411    TCGA-18-3412    TCGA-18-3414    TCGA-18-3415    TCGA-18-3416 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-18-3417    TCGA-18-3419    TCGA-18-3421    TCGA-18-4083    TCGA-18-4086 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" 
   TCGA-18-4721    TCGA-18-5592    TCGA-18-5595    TCGA-21-1070    TCGA-21-1071 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-21-1076    TCGA-21-1077    TCGA-21-1078    TCGA-21-1081    TCGA-21-5782 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-21-5784    TCGA-21-5786    TCGA-21-5787    TCGA-22-0944    TCGA-22-1002 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-22-1011    TCGA-22-1012    TCGA-22-1016    TCGA-22-4591    TCGA-22-4593 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-22-4595    TCGA-22-4599    TCGA-22-4601    TCGA-22-4604    TCGA-22-4607 
"RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE"   "RB1 MUTATED" 
   TCGA-22-4613    TCGA-22-5471    TCGA-22-5472    TCGA-22-5473    TCGA-22-5474 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-22-5477    TCGA-22-5478    TCGA-22-5480    TCGA-22-5482    TCGA-22-5485 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-22-5489    TCGA-22-5491    TCGA-22-5492    TCGA-33-4532    TCGA-33-4533 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" 
   TCGA-33-4538    TCGA-33-4547    TCGA-33-4566    TCGA-33-4582    TCGA-33-4583 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-33-4586    TCGA-33-6737    TCGA-34-2596    TCGA-34-2600    TCGA-34-2608 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-34-5231    TCGA-34-5232    TCGA-34-5234    TCGA-34-5236    TCGA-34-5239 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-34-5240    TCGA-34-5241    TCGA-34-5927    TCGA-34-5928    TCGA-34-5929 
  "RB1 MUTATED" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-37-3783    TCGA-37-3789    TCGA-37-4133    TCGA-37-4135    TCGA-37-4141 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-37-5819    TCGA-39-5016    TCGA-39-5019    TCGA-39-5021    TCGA-39-5022 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE" 
   TCGA-39-5024    TCGA-39-5027    TCGA-39-5028    TCGA-39-5029    TCGA-39-5030 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-39-5031    TCGA-39-5035    TCGA-39-5036    TCGA-39-5037    TCGA-39-5039 
  "RB1 MUTATED" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-43-2578    TCGA-43-3394    TCGA-43-3920    TCGA-43-5668    TCGA-43-6143 
  "RB1 MUTATED" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" 
   TCGA-43-6647    TCGA-43-6770    TCGA-43-6771    TCGA-46-3768    TCGA-46-6025 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-46-6026    TCGA-51-4079    TCGA-51-4080    TCGA-51-4081    TCGA-56-1622 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" 
   TCGA-56-5897    TCGA-56-5898    TCGA-56-6545    TCGA-56-6546    TCGA-60-2698 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-60-2707    TCGA-60-2708    TCGA-60-2709    TCGA-60-2710    TCGA-60-2711 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-60-2712    TCGA-60-2713    TCGA-60-2715    TCGA-60-2719    TCGA-60-2720 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-60-2721    TCGA-60-2722    TCGA-60-2723    TCGA-60-2724    TCGA-60-2725 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-60-2726    TCGA-66-2727    TCGA-66-2734    TCGA-66-2742    TCGA-66-2744 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-66-2754    TCGA-66-2755    TCGA-66-2756    TCGA-66-2757    TCGA-66-2758 
  "RB1 MUTATED" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-66-2759    TCGA-66-2763    TCGA-66-2765    TCGA-66-2766    TCGA-66-2767 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-66-2768    TCGA-66-2770    TCGA-66-2771    TCGA-66-2773    TCGA-66-2777 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-66-2778    TCGA-66-2780    TCGA-66-2781    TCGA-66-2782    TCGA-66-2783 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" 
   TCGA-66-2785    TCGA-66-2786    TCGA-66-2787    TCGA-66-2788    TCGA-66-2789 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-66-2791    TCGA-66-2792    TCGA-66-2793    TCGA-66-2794    TCGA-66-2795 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-66-2800    TCGA-85-6560    TCGA-85-6561 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
[1] "hr=" "1"  
D9V2, continuous
               vv
clus            STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  RB1 MUTATED          2        6         0         1          2          1
  RB1 WILD-TYPE       25       63        13        25         22         13
               vv
clus            STAGE IV
  RB1 MUTATED          0
  RB1 WILD-TYPE        3
D9V3, multiclass
               vv
clus             T1  T2  T3  T4
  RB1 MUTATED     2   9   0   1
  RB1 WILD-TYPE  33 107  14  11
D9V4, multiclass
    clus
vv   RB1 MUTATED RB1 WILD-TYPE
  T1           2            33
  T2           9           107
  T3           0            14
  T4           1            11
               vv
clus             N0  N1  N2  N3
  RB1 MUTATED     9   1   1   1
  RB1 WILD-TYPE 107  38  16   4
D9V5, multiclass
    clus
vv   RB1 MUTATED RB1 WILD-TYPE
  N0           9           107
  N1           1            38
  N2           1            16
  N3           1             4
               vv
clus             M0  M1  MX
  RB1 MUTATED    12   0   0
  RB1 WILD-TYPE 152   3   6
D9V6, multiclass
    clus
vv   RB1 MUTATED RB1 WILD-TYPE
  M0          12           152
  M1           0             3
  MX           0             6
D9V7, binary
               cls
clus              0   1
  RB1 MUTATED     5   7
  RB1 WILD-TYPE  41 124
[1] "tbl2"
               cls
clus            [,1] [,2]
  RB1 MUTATED      5    7
  RB1 WILD-TYPE   41  124
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  FEMALE           5            41
  MALE             7           124
D9V8, continuous
[1] "Remove cluster labels:" "RB1 MUTATED"           
clus
  RB1 MUTATED RB1 WILD-TYPE 
            1            35 
   TCGA-18-3406    TCGA-18-3407    TCGA-18-3410    TCGA-18-3414    TCGA-18-3419 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-21-5782    TCGA-21-5787    TCGA-22-4591    TCGA-22-4593    TCGA-22-4595 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-22-4599    TCGA-22-4604    TCGA-22-4613    TCGA-22-5472    TCGA-22-5473 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-22-5474    TCGA-22-5477    TCGA-22-5478    TCGA-22-5480    TCGA-22-5482 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-22-5485    TCGA-22-5489    TCGA-22-5491    TCGA-22-5492    TCGA-34-5234 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-37-4133    TCGA-37-4135    TCGA-37-5819    TCGA-60-2698    TCGA-60-2712 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-60-2715    TCGA-60-2725    TCGA-60-2726    TCGA-70-6722    TCGA-70-6723 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
               vv
clus            LUNG BASALOID SQUAMOUS CELL CARCINOMA
  RB1 MUTATED                                       2
  RB1 WILD-TYPE                                     3
               vv
clus            LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  RB1 MUTATED                                        0
  RB1 WILD-TYPE                                      1
               vv
clus            LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  RB1 MUTATED                                                            10
  RB1 WILD-TYPE                                                         161
D9V9, multiclass
                                                             clus
vv                                                            RB1 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                 2
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)          10
                                                             clus
vv                                                            RB1 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   3
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                  1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)           161
D9V10, binary
               cls
clus              0   1
  RB1 MUTATED     0  12
  RB1 WILD-TYPE   4 161
[1] "tbl2"
               cls
clus            [,1] [,2]
  RB1 MUTATED      0   12
  RB1 WILD-TYPE    4  161
     clus
vv    RB1 MUTATED RB1 WILD-TYPE
  NO            0             4
  YES          12           161
D9V11, continuous
D9V12, continuous
               vv
clus             R0  R1  R2  RX
  RB1 MUTATED     9   0   1   1
  RB1 WILD-TYPE 137   2   3   9
D9V13, multiclass
    clus
vv   RB1 MUTATED RB1 WILD-TYPE
  R0           9           137
  R1           0             2
  R2           1             3
  RX           1             9

Clustering(10) Variable = HS6ST1 MUTATION ANALYSIS
D10V1, survival
                  sevent
clus2               0  1
  HS6ST1 MUTATED    4  1
  HS6ST1 WILD-TYPE 89 74
  HS6ST1 MUTATED HS6ST1 WILD-TYPE 
               5              163 
  HS6ST1 MUTATED HS6ST1 WILD-TYPE 
               1               74 
$`HS6ST1 MUTATED`
TCGA-18-3409 TCGA-39-5030 TCGA-43-3394 TCGA-66-2756 TCGA-66-2771 
       79.46         1.94        27.02         0.99        19.00 

$`HS6ST1 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07         4.80        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       13.02        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       119.54 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 
       46.88        60.89        34.78        15.55         9.30        31.63 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 
       41.69        33.93        10.82         7.33         4.31         1.74 
TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 
       14.10        27.02        20.45        35.08        24.13        38.17 
TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 
       34.75        13.12        19.30        11.77        31.73        64.90 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 
       63.52        14.60        44.22         0.79        71.34        11.74 
TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 
       30.08        62.86        56.32        16.60         7.63       114.05 
TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 
       97.94        43.10       173.79       103.53       141.34        14.07 
TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 
       19.76         2.63        61.61        32.84        50.24        67.79 
TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 
       56.38         9.04        23.24        12.00        14.07        30.94 
TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 
       18.12         4.96         3.95         0.43         7.82         6.81 
TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 
        0.39         3.39        74.07        44.71        68.58        55.17 
TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5031 TCGA-39-5035 
       70.03        60.76         1.71        24.33        27.35        15.58 
TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3920 TCGA-43-5668 
       35.64        35.70        17.88        22.49        33.07        11.47 
TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 
       12.36        24.89        10.19         5.42         9.96        10.65 
TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 
       13.87         0.39         0.39        29.95        28.93         0.10 
TCGA-56-5898 TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 
       18.25         2.04         1.02        10.22        21.70        80.42 
TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 
       49.48        66.51        41.39         9.01        56.91        35.34 
TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 
       42.61         3.16        32.28        29.85        35.90        23.57 
TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 
       26.79        11.77        16.96        43.10        21.07         0.99 
TCGA-66-2754 TCGA-66-2755 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 
        2.01         0.92         0.99        20.98        25.02         0.99 
TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2773 
        2.01         1.02         2.01         2.01        23.01         3.02 
TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 
        2.01        19.00        12.03         3.98        12.00        24.95 
TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 
        1.94        25.97        40.01        22.98         4.04         5.03 
TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 
       30.02        10.06        54.08         4.01        49.05         0.36 
TCGA-85-6561 
        0.79 

  HS6ST1 MUTATED HS6ST1 WILD-TYPE 
            0.99             0.10 
  HS6ST1 MUTATED HS6ST1 WILD-TYPE 
           79.46           173.79 
  HS6ST1 MUTATED HS6ST1 WILD-TYPE 
           19.00            20.45 
[1] "1.0 - 79.5 (19.0)"  "0.1 - 173.8 (20.4)"
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE"   "HS6ST1 MUTATED" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"HS6ST1 WILD-TYPE"   "HS6ST1 MUTATED" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
  "HS6ST1 MUTATED" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-5898 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-56-6545       TCGA-56-6546       TCGA-60-2698       TCGA-60-2707 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-60-2708       TCGA-60-2709       TCGA-60-2710       TCGA-60-2711 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-60-2712       TCGA-60-2713       TCGA-60-2715       TCGA-60-2719 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-60-2720       TCGA-60-2721       TCGA-60-2722       TCGA-60-2723 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-60-2724       TCGA-60-2725       TCGA-60-2726       TCGA-66-2727 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-66-2734       TCGA-66-2742       TCGA-66-2744       TCGA-66-2754 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-66-2755       TCGA-66-2756       TCGA-66-2757       TCGA-66-2758 
"HS6ST1 WILD-TYPE"   "HS6ST1 MUTATED" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-66-2759       TCGA-66-2763       TCGA-66-2765       TCGA-66-2766 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-66-2767       TCGA-66-2768       TCGA-66-2770       TCGA-66-2771 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE"   "HS6ST1 MUTATED" 
      TCGA-66-2773       TCGA-66-2777       TCGA-66-2778       TCGA-66-2780 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-66-2781       TCGA-66-2782       TCGA-66-2783       TCGA-66-2785 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-66-2786       TCGA-66-2787       TCGA-66-2788       TCGA-66-2789 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-66-2791       TCGA-66-2792       TCGA-66-2793       TCGA-66-2794 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-66-2795       TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE"   "HS6ST1 MUTATED" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"HS6ST1 WILD-TYPE"   "HS6ST1 MUTATED" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
  "HS6ST1 MUTATED" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-5898 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-56-6545       TCGA-56-6546       TCGA-60-2698       TCGA-60-2707 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-60-2708       TCGA-60-2709       TCGA-60-2710       TCGA-60-2711 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-60-2712       TCGA-60-2713       TCGA-60-2715       TCGA-60-2719 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-60-2720       TCGA-60-2721       TCGA-60-2722       TCGA-60-2723 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-60-2724       TCGA-60-2725       TCGA-60-2726       TCGA-66-2727 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-66-2734       TCGA-66-2742       TCGA-66-2744       TCGA-66-2754 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-66-2755       TCGA-66-2756       TCGA-66-2757       TCGA-66-2758 
"HS6ST1 WILD-TYPE"   "HS6ST1 MUTATED" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-66-2759       TCGA-66-2763       TCGA-66-2765       TCGA-66-2766 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-66-2767       TCGA-66-2768       TCGA-66-2770       TCGA-66-2771 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE"   "HS6ST1 MUTATED" 
      TCGA-66-2773       TCGA-66-2777       TCGA-66-2778       TCGA-66-2780 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-66-2781       TCGA-66-2782       TCGA-66-2783       TCGA-66-2785 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-66-2786       TCGA-66-2787       TCGA-66-2788       TCGA-66-2789 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-66-2791       TCGA-66-2792       TCGA-66-2793       TCGA-66-2794 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-66-2795       TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE"   "HS6ST1 MUTATED" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"HS6ST1 WILD-TYPE"   "HS6ST1 MUTATED" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
  "HS6ST1 MUTATED" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-5898 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-56-6545       TCGA-56-6546       TCGA-60-2698       TCGA-60-2707 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-60-2708       TCGA-60-2709       TCGA-60-2710       TCGA-60-2711 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-60-2712       TCGA-60-2713       TCGA-60-2715       TCGA-60-2719 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-60-2720       TCGA-60-2721       TCGA-60-2722       TCGA-60-2723 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-60-2724       TCGA-60-2725       TCGA-60-2726       TCGA-66-2727 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-66-2734       TCGA-66-2742       TCGA-66-2744       TCGA-66-2754 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-66-2755       TCGA-66-2756       TCGA-66-2757       TCGA-66-2758 
"HS6ST1 WILD-TYPE"   "HS6ST1 MUTATED" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-66-2759       TCGA-66-2763       TCGA-66-2765       TCGA-66-2766 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-66-2767       TCGA-66-2768       TCGA-66-2770       TCGA-66-2771 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE"   "HS6ST1 MUTATED" 
      TCGA-66-2773       TCGA-66-2777       TCGA-66-2778       TCGA-66-2780 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-66-2781       TCGA-66-2782       TCGA-66-2783       TCGA-66-2785 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-66-2786       TCGA-66-2787       TCGA-66-2788       TCGA-66-2789 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-66-2791       TCGA-66-2792       TCGA-66-2793       TCGA-66-2794 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-66-2795       TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
[1] "hr=" "2.1"
D10V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  HS6ST1 MUTATED          0        1         0         1          1          1
  HS6ST1 WILD-TYPE       27       68        13        25         23         13
                  vv
clus               STAGE IV
  HS6ST1 MUTATED          0
  HS6ST1 WILD-TYPE        3
D10V3, multiclass
                  vv
clus                T1  T2  T3  T4
  HS6ST1 MUTATED     1   3   0   1
  HS6ST1 WILD-TYPE  34 113  14  11
D10V4, multiclass
    clus
vv   HS6ST1 MUTATED HS6ST1 WILD-TYPE
  T1              1               34
  T2              3              113
  T3              0               14
  T4              1               11
                  vv
clus                N0  N1  N2  N3
  HS6ST1 MUTATED     3   1   1   0
  HS6ST1 WILD-TYPE 113  38  16   5
D10V5, multiclass
    clus
vv   HS6ST1 MUTATED HS6ST1 WILD-TYPE
  N0              3              113
  N1              1               38
  N2              1               16
  N3              0                5
                  vv
clus                M0  M1  MX
  HS6ST1 MUTATED     5   0   0
  HS6ST1 WILD-TYPE 159   3   6
D10V6, multiclass
    clus
vv   HS6ST1 MUTATED HS6ST1 WILD-TYPE
  M0              5              159
  M1              0                3
  MX              0                6
D10V7, binary
                  cls
clus                 0   1
  HS6ST1 MUTATED     1   4
  HS6ST1 WILD-TYPE  45 127
[1] "tbl2"
                  cls
clus               [,1] [,2]
  HS6ST1 MUTATED      1    4
  HS6ST1 WILD-TYPE   45  127
        clus
vv       HS6ST1 MUTATED HS6ST1 WILD-TYPE
  FEMALE              1               45
  MALE                4              127
D10V8, continuous
                  vv
clus               LUNG BASALOID SQUAMOUS CELL CARCINOMA
  HS6ST1 MUTATED                                       1
  HS6ST1 WILD-TYPE                                     4
                  vv
clus               LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  HS6ST1 MUTATED                                        0
  HS6ST1 WILD-TYPE                                      1
                  vv
clus               LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  HS6ST1 MUTATED                                                             4
  HS6ST1 WILD-TYPE                                                         167
D10V9, multiclass
                                                             clus
vv                                                            HS6ST1 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    1
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              4
                                                             clus
vv                                                            HS6ST1 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      4
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              167
D10V10, binary
                  cls
clus                 0   1
  HS6ST1 MUTATED     0   5
  HS6ST1 WILD-TYPE   4 168
[1] "tbl2"
                  cls
clus               [,1] [,2]
  HS6ST1 MUTATED      0    5
  HS6ST1 WILD-TYPE    4  168
     clus
vv    HS6ST1 MUTATED HS6ST1 WILD-TYPE
  NO               0                4
  YES              5              168
D10V11, continuous
D10V12, continuous
                  vv
clus                R0  R1  R2  RX
  HS6ST1 MUTATED     5   0   0   0
  HS6ST1 WILD-TYPE 141   2   4  10
D10V13, multiclass
    clus
vv   HS6ST1 MUTATED HS6ST1 WILD-TYPE
  R0              5              141
  R1              0                2
  R2              0                4
  RX              0               10

Clustering(11) Variable = FBXW7 MUTATION ANALYSIS
D11V1, survival
                 sevent
clus2              0  1
  FBXW7 MUTATED    3  7
  FBXW7 WILD-TYPE 90 68
  FBXW7 MUTATED FBXW7 WILD-TYPE 
             10             158 
  FBXW7 MUTATED FBXW7 WILD-TYPE 
              7              68 
$`FBXW7 MUTATED`
TCGA-18-3406 TCGA-18-3409 TCGA-18-4083 TCGA-18-5595 TCGA-21-1078 TCGA-22-1012 
       12.16        79.46         6.15        27.16        15.55        14.10 
TCGA-22-4604 TCGA-51-4081 TCGA-60-2698 TCGA-60-2722 
       13.12        29.95        10.22        29.85 

$`FBXW7 WILD-TYPE`
TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 TCGA-18-3414 
        4.47        81.07         4.80        46.52        11.34        13.02 
TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4086 
       59.51        28.34        24.92         1.61        43.76         2.79 
TCGA-18-4721 TCGA-18-5592 TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 
       90.51         3.02       119.54        46.88        60.89        34.78 
TCGA-21-1081 TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 
        9.30        31.63        41.69        33.93        10.82         7.33 
TCGA-22-1002 TCGA-22-1011 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 
        4.31         1.74        27.02        20.45        35.08        24.13 
TCGA-22-4599 TCGA-22-4601 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 
       38.17        34.75        19.30        11.77        31.73        64.90 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 
       63.52        14.60        44.22         0.79        71.34        11.74 
TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 
       30.08        62.86        56.32        16.60         7.63       114.05 
TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 
       97.94        43.10       173.79       103.53       141.34        14.07 
TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 
       19.76         2.63        61.61        32.84        50.24        67.79 
TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 
       56.38         9.04        23.24        12.00        14.07        30.94 
TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 
       18.12         4.96         3.95         0.43         7.82         6.81 
TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 
        0.39         3.39        74.07        44.71        68.58        55.17 
TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 
       70.03        60.76         1.71        24.33         1.94        27.35 
TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 
       15.58        35.64        35.70        17.88        22.49        27.02 
TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 
       33.07        11.47        12.36        24.89        10.19         5.42 
TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-56-1622 
        9.96        10.65        13.87         0.39         0.39        28.93 
TCGA-56-5897 TCGA-56-5898 TCGA-56-6545 TCGA-56-6546 TCGA-60-2707 TCGA-60-2708 
        0.10        18.25         2.04         1.02        21.70        80.42 
TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 
       49.48        66.51        41.39         9.01        56.91        35.34 
TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 
       42.61         3.16        32.28        35.90        23.57        26.79 
TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 
       11.77        16.96        43.10        21.07         0.99         2.01 
TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 
        0.92         0.99         0.99        20.98        25.02         0.99 
TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 
        2.01         1.02         2.01         2.01        23.01        19.00 
TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 
        3.02         2.01        19.00        12.03         3.98        12.00 
TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 
       24.95         1.94        25.97        40.01        22.98         4.04 
TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 
        5.03        30.02        10.06        54.08         4.01        49.05 
TCGA-85-6560 TCGA-85-6561 
        0.36         0.79 

  FBXW7 MUTATED FBXW7 WILD-TYPE 
           6.15            0.10 
  FBXW7 MUTATED FBXW7 WILD-TYPE 
          79.46          173.79 
  FBXW7 MUTATED FBXW7 WILD-TYPE 
         14.825          20.715 
[1] "6.2 - 79.5 (14.8)"  "0.1 - 173.8 (20.7)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
  "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-5898 
  "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-56-6545      TCGA-56-6546      TCGA-60-2698      TCGA-60-2707 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" 
     TCGA-60-2708      TCGA-60-2709      TCGA-60-2710      TCGA-60-2711 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-60-2712      TCGA-60-2713      TCGA-60-2715      TCGA-60-2719 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-60-2720      TCGA-60-2721      TCGA-60-2722      TCGA-60-2723 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" 
     TCGA-60-2724      TCGA-60-2725      TCGA-60-2726      TCGA-66-2727 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-66-2734      TCGA-66-2742      TCGA-66-2744      TCGA-66-2754 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-66-2755      TCGA-66-2756      TCGA-66-2757      TCGA-66-2758 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-66-2759      TCGA-66-2763      TCGA-66-2765      TCGA-66-2766 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-66-2767      TCGA-66-2768      TCGA-66-2770      TCGA-66-2771 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-66-2773      TCGA-66-2777      TCGA-66-2778      TCGA-66-2780 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-66-2781      TCGA-66-2782      TCGA-66-2783      TCGA-66-2785 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-66-2786      TCGA-66-2787      TCGA-66-2788      TCGA-66-2789 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-66-2791      TCGA-66-2792      TCGA-66-2793      TCGA-66-2794 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-66-2795      TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
  "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-5898 
  "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-56-6545      TCGA-56-6546      TCGA-60-2698      TCGA-60-2707 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" 
     TCGA-60-2708      TCGA-60-2709      TCGA-60-2710      TCGA-60-2711 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-60-2712      TCGA-60-2713      TCGA-60-2715      TCGA-60-2719 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-60-2720      TCGA-60-2721      TCGA-60-2722      TCGA-60-2723 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" 
     TCGA-60-2724      TCGA-60-2725      TCGA-60-2726      TCGA-66-2727 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-66-2734      TCGA-66-2742      TCGA-66-2744      TCGA-66-2754 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-66-2755      TCGA-66-2756      TCGA-66-2757      TCGA-66-2758 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-66-2759      TCGA-66-2763      TCGA-66-2765      TCGA-66-2766 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-66-2767      TCGA-66-2768      TCGA-66-2770      TCGA-66-2771 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-66-2773      TCGA-66-2777      TCGA-66-2778      TCGA-66-2780 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-66-2781      TCGA-66-2782      TCGA-66-2783      TCGA-66-2785 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-66-2786      TCGA-66-2787      TCGA-66-2788      TCGA-66-2789 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-66-2791      TCGA-66-2792      TCGA-66-2793      TCGA-66-2794 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-66-2795      TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
  "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-5898 
  "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-56-6545      TCGA-56-6546      TCGA-60-2698      TCGA-60-2707 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" 
     TCGA-60-2708      TCGA-60-2709      TCGA-60-2710      TCGA-60-2711 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-60-2712      TCGA-60-2713      TCGA-60-2715      TCGA-60-2719 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-60-2720      TCGA-60-2721      TCGA-60-2722      TCGA-60-2723 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" 
     TCGA-60-2724      TCGA-60-2725      TCGA-60-2726      TCGA-66-2727 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-66-2734      TCGA-66-2742      TCGA-66-2744      TCGA-66-2754 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-66-2755      TCGA-66-2756      TCGA-66-2757      TCGA-66-2758 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-66-2759      TCGA-66-2763      TCGA-66-2765      TCGA-66-2766 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-66-2767      TCGA-66-2768      TCGA-66-2770      TCGA-66-2771 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-66-2773      TCGA-66-2777      TCGA-66-2778      TCGA-66-2780 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-66-2781      TCGA-66-2782      TCGA-66-2783      TCGA-66-2785 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-66-2786      TCGA-66-2787      TCGA-66-2788      TCGA-66-2789 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-66-2791      TCGA-66-2792      TCGA-66-2793      TCGA-66-2794 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-66-2795      TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
[1] "hr=" "1.7"
D11V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  FBXW7 MUTATED          1        3         1         4          0          0
  FBXW7 WILD-TYPE       26       66        12        22         24         14
                 vv
clus              STAGE IV
  FBXW7 MUTATED          0
  FBXW7 WILD-TYPE        3
D11V3, multiclass
                 vv
clus               T1  T2  T3  T4
  FBXW7 MUTATED     2   8   0   0
  FBXW7 WILD-TYPE  33 108  14  12
D11V4, multiclass
    clus
vv   FBXW7 MUTATED FBXW7 WILD-TYPE
  T1             2              33
  T2             8             108
  T3             0              14
  T4             0              12
                 vv
clus               N0  N1  N2  N3
  FBXW7 MUTATED     5   5   0   0
  FBXW7 WILD-TYPE 111  34  17   5
D11V5, multiclass
    clus
vv   FBXW7 MUTATED FBXW7 WILD-TYPE
  N0             5             111
  N1             5              34
  N2             0              17
  N3             0               5
                 vv
clus               M0  M1  MX
  FBXW7 MUTATED    10   0   0
  FBXW7 WILD-TYPE 154   3   6
D11V6, multiclass
    clus
vv   FBXW7 MUTATED FBXW7 WILD-TYPE
  M0            10             154
  M1             0               3
  MX             0               6
D11V7, binary
                 cls
clus                0   1
  FBXW7 MUTATED     1   9
  FBXW7 WILD-TYPE  45 122
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FBXW7 MUTATED      1    9
  FBXW7 WILD-TYPE   45  122
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  FEMALE             1              45
  MALE               9             122
D11V8, continuous
                 vv
clus              LUNG BASALOID SQUAMOUS CELL CARCINOMA
  FBXW7 MUTATED                                       1
  FBXW7 WILD-TYPE                                     4
                 vv
clus              LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  FBXW7 MUTATED                                        0
  FBXW7 WILD-TYPE                                      1
                 vv
clus              LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  FBXW7 MUTATED                                                             9
  FBXW7 WILD-TYPE                                                         162
D11V9, multiclass
                                                             clus
vv                                                            FBXW7 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   1
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             9
                                                             clus
vv                                                            FBXW7 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     4
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             162
D11V10, binary
                 cls
clus                0   1
  FBXW7 MUTATED     0  10
  FBXW7 WILD-TYPE   4 163
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FBXW7 MUTATED      0   10
  FBXW7 WILD-TYPE    4  163
     clus
vv    FBXW7 MUTATED FBXW7 WILD-TYPE
  NO              0               4
  YES            10             163
D11V11, continuous
D11V12, continuous
                 vv
clus               R0  R1  R2  RX
  FBXW7 MUTATED     9   0   0   1
  FBXW7 WILD-TYPE 137   2   4   9
D11V13, multiclass
    clus
vv   FBXW7 MUTATED FBXW7 WILD-TYPE
  R0             9             137
  R1             0               2
  R2             0               4
  RX             1               9

Clustering(12) Variable = ZNF567 MUTATION ANALYSIS
D12V1, survival
                  sevent
clus2               0  1
  ZNF567 MUTATED    1  2
  ZNF567 WILD-TYPE 92 73
  ZNF567 MUTATED ZNF567 WILD-TYPE 
               3              165 
  ZNF567 MUTATED ZNF567 WILD-TYPE 
               2               73 
$`ZNF567 MUTATED`
TCGA-22-4591 TCGA-39-5024 TCGA-39-5030 
       20.45        70.03         1.94 

$`ZNF567 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 
      119.54        46.88        60.89        34.78        15.55         9.30 
TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 
       31.63        41.69        33.93        10.82         7.33         4.31 
TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 
        1.74        14.10        27.02        35.08        24.13        38.17 
TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 
       34.75        13.12        19.30        11.77        31.73        64.90 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 
       63.52        14.60        44.22         0.79        71.34        11.74 
TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 
       30.08        62.86        56.32        16.60         7.63       114.05 
TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 
       97.94        43.10       173.79       103.53       141.34        14.07 
TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 
       19.76         2.63        61.61        32.84        50.24        67.79 
TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 
       56.38         9.04        23.24        12.00        14.07        30.94 
TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 
       18.12         4.96         3.95         0.43         7.82         6.81 
TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 
        0.39         3.39        74.07        44.71        68.58        55.17 
TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 
       60.76         1.71        24.33        27.35        15.58        35.64 
TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 
       35.70        17.88        22.49        27.02        33.07        11.47 
TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 
       12.36        24.89        10.19         5.42         9.96        10.65 
TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 
       13.87         0.39         0.39        29.95        28.93         0.10 
TCGA-56-5898 TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 
       18.25         2.04         1.02        10.22        21.70        80.42 
TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 
       49.48        66.51        41.39         9.01        56.91        35.34 
TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 
       42.61         3.16        32.28        29.85        35.90        23.57 
TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 
       26.79        11.77        16.96        43.10        21.07         0.99 
TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 
        2.01         0.92         0.99         0.99        20.98        25.02 
TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 
        0.99         2.01         1.02         2.01         2.01        23.01 
TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 
       19.00         3.02         2.01        19.00        12.03         3.98 
TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 
       12.00        24.95         1.94        25.97        40.01        22.98 
TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 
        4.04         5.03        30.02        10.06        54.08         4.01 
TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       49.05         0.36         0.79 

  ZNF567 MUTATED ZNF567 WILD-TYPE 
            1.94             0.10 
  ZNF567 MUTATED ZNF567 WILD-TYPE 
           70.03           173.79 
  ZNF567 MUTATED ZNF567 WILD-TYPE 
           20.45            19.76 
[1] "1.9 - 70.0 (20.4)"  "0.1 - 173.8 (19.8)"
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"ZNF567 WILD-TYPE"   "ZNF567 MUTATED" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"ZNF567 WILD-TYPE"   "ZNF567 MUTATED" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"ZNF567 WILD-TYPE"   "ZNF567 MUTATED" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-5898 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-56-6545       TCGA-56-6546       TCGA-60-2698       TCGA-60-2707 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-60-2708       TCGA-60-2709       TCGA-60-2710       TCGA-60-2711 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-60-2712       TCGA-60-2713       TCGA-60-2715       TCGA-60-2719 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-60-2720       TCGA-60-2721       TCGA-60-2722       TCGA-60-2723 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-60-2724       TCGA-60-2725       TCGA-60-2726       TCGA-66-2727 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-66-2734       TCGA-66-2742       TCGA-66-2744       TCGA-66-2754 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-66-2755       TCGA-66-2756       TCGA-66-2757       TCGA-66-2758 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-66-2759       TCGA-66-2763       TCGA-66-2765       TCGA-66-2766 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-66-2767       TCGA-66-2768       TCGA-66-2770       TCGA-66-2771 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-66-2773       TCGA-66-2777       TCGA-66-2778       TCGA-66-2780 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-66-2781       TCGA-66-2782       TCGA-66-2783       TCGA-66-2785 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-66-2786       TCGA-66-2787       TCGA-66-2788       TCGA-66-2789 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-66-2791       TCGA-66-2792       TCGA-66-2793       TCGA-66-2794 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-66-2795       TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"ZNF567 WILD-TYPE"   "ZNF567 MUTATED" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"ZNF567 WILD-TYPE"   "ZNF567 MUTATED" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"ZNF567 WILD-TYPE"   "ZNF567 MUTATED" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-5898 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-56-6545       TCGA-56-6546       TCGA-60-2698       TCGA-60-2707 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-60-2708       TCGA-60-2709       TCGA-60-2710       TCGA-60-2711 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-60-2712       TCGA-60-2713       TCGA-60-2715       TCGA-60-2719 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-60-2720       TCGA-60-2721       TCGA-60-2722       TCGA-60-2723 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-60-2724       TCGA-60-2725       TCGA-60-2726       TCGA-66-2727 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-66-2734       TCGA-66-2742       TCGA-66-2744       TCGA-66-2754 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-66-2755       TCGA-66-2756       TCGA-66-2757       TCGA-66-2758 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-66-2759       TCGA-66-2763       TCGA-66-2765       TCGA-66-2766 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-66-2767       TCGA-66-2768       TCGA-66-2770       TCGA-66-2771 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-66-2773       TCGA-66-2777       TCGA-66-2778       TCGA-66-2780 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-66-2781       TCGA-66-2782       TCGA-66-2783       TCGA-66-2785 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-66-2786       TCGA-66-2787       TCGA-66-2788       TCGA-66-2789 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-66-2791       TCGA-66-2792       TCGA-66-2793       TCGA-66-2794 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-66-2795       TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"ZNF567 WILD-TYPE"   "ZNF567 MUTATED" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"ZNF567 WILD-TYPE"   "ZNF567 MUTATED" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"ZNF567 WILD-TYPE"   "ZNF567 MUTATED" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-5898 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-56-6545       TCGA-56-6546       TCGA-60-2698       TCGA-60-2707 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-60-2708       TCGA-60-2709       TCGA-60-2710       TCGA-60-2711 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-60-2712       TCGA-60-2713       TCGA-60-2715       TCGA-60-2719 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-60-2720       TCGA-60-2721       TCGA-60-2722       TCGA-60-2723 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-60-2724       TCGA-60-2725       TCGA-60-2726       TCGA-66-2727 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-66-2734       TCGA-66-2742       TCGA-66-2744       TCGA-66-2754 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-66-2755       TCGA-66-2756       TCGA-66-2757       TCGA-66-2758 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-66-2759       TCGA-66-2763       TCGA-66-2765       TCGA-66-2766 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-66-2767       TCGA-66-2768       TCGA-66-2770       TCGA-66-2771 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-66-2773       TCGA-66-2777       TCGA-66-2778       TCGA-66-2780 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-66-2781       TCGA-66-2782       TCGA-66-2783       TCGA-66-2785 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-66-2786       TCGA-66-2787       TCGA-66-2788       TCGA-66-2789 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-66-2791       TCGA-66-2792       TCGA-66-2793       TCGA-66-2794 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-66-2795       TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
[1] "hr=" "1.3"
D12V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  ZNF567 MUTATED          0        0         0         0          3          0
  ZNF567 WILD-TYPE       27       69        13        26         21         14
                  vv
clus               STAGE IV
  ZNF567 MUTATED          0
  ZNF567 WILD-TYPE        3
D12V3, multiclass
                  vv
clus                T1  T2  T3  T4
  ZNF567 MUTATED     0   2   1   0
  ZNF567 WILD-TYPE  35 114  13  12
D12V4, multiclass
    clus
vv   ZNF567 MUTATED ZNF567 WILD-TYPE
  T1              0               35
  T2              2              114
  T3              1               13
  T4              0               12
                  vv
clus                N0  N1  N2  N3
  ZNF567 MUTATED     0   0   3   0
  ZNF567 WILD-TYPE 116  39  14   5
D12V5, multiclass
    clus
vv   ZNF567 MUTATED ZNF567 WILD-TYPE
  N0              0              116
  N1              0               39
  N2              3               14
  N3              0                5
                  vv
clus                M0  M1  MX
  ZNF567 MUTATED     3   0   0
  ZNF567 WILD-TYPE 161   3   6
D12V6, multiclass
    clus
vv   ZNF567 MUTATED ZNF567 WILD-TYPE
  M0              3              161
  M1              0                3
  MX              0                6
D12V7, binary
                  cls
clus                 0   1
  ZNF567 MUTATED     2   1
  ZNF567 WILD-TYPE  44 130
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF567 MUTATED      2    1
  ZNF567 WILD-TYPE   44  130
        clus
vv       ZNF567 MUTATED ZNF567 WILD-TYPE
  FEMALE              2               44
  MALE                1              130
D12V8, continuous
[1] "Remove cluster labels:" "ZNF567 MUTATED"        
clus
  ZNF567 MUTATED ZNF567 WILD-TYPE 
               1               35 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3410       TCGA-18-3414 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-18-3419       TCGA-21-5782       TCGA-21-5787       TCGA-22-4593 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-22-4595       TCGA-22-4599       TCGA-22-4601       TCGA-22-4604 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5472       TCGA-22-5473       TCGA-22-5474 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-22-5477       TCGA-22-5478       TCGA-22-5480       TCGA-22-5482 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-22-5485       TCGA-22-5489       TCGA-22-5491       TCGA-22-5492 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-34-5234       TCGA-37-4133       TCGA-37-4135       TCGA-37-5819 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-60-2698       TCGA-60-2712       TCGA-60-2715       TCGA-60-2725 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-60-2726       TCGA-70-6722       TCGA-70-6723 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
                  vv
clus               LUNG BASALOID SQUAMOUS CELL CARCINOMA
  ZNF567 MUTATED                                       0
  ZNF567 WILD-TYPE                                     5
                  vv
clus               LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  ZNF567 MUTATED                                        0
  ZNF567 WILD-TYPE                                      1
                  vv
clus               LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  ZNF567 MUTATED                                                             3
  ZNF567 WILD-TYPE                                                         168
D12V9, multiclass
                                                             clus
vv                                                            ZNF567 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    0
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              3
                                                             clus
vv                                                            ZNF567 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      5
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              168
D12V10, binary
                  cls
clus                 0   1
  ZNF567 MUTATED     0   3
  ZNF567 WILD-TYPE   4 170
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF567 MUTATED      0    3
  ZNF567 WILD-TYPE    4  170
     clus
vv    ZNF567 MUTATED ZNF567 WILD-TYPE
  NO               0                4
  YES              3              170
D12V11, continuous
[1] "Remove cluster labels:" "ZNF567 MUTATED"        
clus
  ZNF567 MUTATED ZNF567 WILD-TYPE 
               2              145 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-18-3411       TCGA-18-3412       TCGA-18-3414       TCGA-18-3415 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-18-3416       TCGA-18-3417       TCGA-18-3419       TCGA-18-3421 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-18-4083       TCGA-18-4086       TCGA-18-5592       TCGA-21-1070 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-21-1071       TCGA-21-1076       TCGA-21-1077       TCGA-21-1078 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-21-1081       TCGA-21-5782       TCGA-21-5784       TCGA-21-5786 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-21-5787       TCGA-22-0944       TCGA-22-1002       TCGA-22-1011 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-22-1012       TCGA-22-1016       TCGA-22-4593       TCGA-22-4595 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5480       TCGA-22-5482 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-22-5485       TCGA-22-5489       TCGA-22-5491       TCGA-22-5492 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-33-4532       TCGA-33-4533       TCGA-33-4538       TCGA-33-4547 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-33-4566       TCGA-33-4582       TCGA-33-4583       TCGA-33-4586 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-33-6737       TCGA-34-2596       TCGA-34-2600       TCGA-34-2608 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-34-5231       TCGA-34-5234       TCGA-34-5240       TCGA-34-5241 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-34-5928       TCGA-34-5929       TCGA-37-4133       TCGA-37-4135 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5027       TCGA-39-5028       TCGA-39-5029 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-39-5031       TCGA-39-5035       TCGA-39-5036       TCGA-39-5037 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-39-5039       TCGA-43-2578       TCGA-43-3394       TCGA-43-3920 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-43-5668       TCGA-43-6143       TCGA-43-6647       TCGA-43-6770 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-43-6771       TCGA-51-4079       TCGA-51-4081       TCGA-56-1622 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-60-2707       TCGA-60-2708       TCGA-60-2709       TCGA-60-2710 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-60-2711       TCGA-60-2712       TCGA-60-2713       TCGA-60-2715 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-60-2719       TCGA-60-2720       TCGA-60-2721       TCGA-60-2722 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-60-2723       TCGA-60-2724       TCGA-60-2725       TCGA-60-2726 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-63-5131       TCGA-63-6202       TCGA-66-2727       TCGA-66-2734 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-66-2757       TCGA-66-2758       TCGA-66-2759       TCGA-66-2763 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-66-2765       TCGA-66-2766       TCGA-66-2767       TCGA-66-2770 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-66-2771       TCGA-66-2773       TCGA-66-2777       TCGA-66-2778 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-66-2780       TCGA-66-2781       TCGA-66-2782       TCGA-66-2783 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-66-2785       TCGA-66-2786       TCGA-66-2787       TCGA-66-2788 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-66-2789       TCGA-66-2791       TCGA-66-2792       TCGA-66-2793 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-66-2794       TCGA-66-2795       TCGA-66-2800       TCGA-85-6560 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-85-6561 
"ZNF567 WILD-TYPE" 
D12V12, continuous
                  vv
clus                R0  R1  R2  RX
  ZNF567 MUTATED     3   0   0   0
  ZNF567 WILD-TYPE 143   2   4  10
D12V13, multiclass
    clus
vv   ZNF567 MUTATED ZNF567 WILD-TYPE
  R0              3              143
  R1              0                2
  R2              0                4
  RX              0               10

Clustering(13) Variable = ELTD1 MUTATION ANALYSIS
D13V1, survival
                 sevent
clus2              0  1
  ELTD1 MUTATED    7 10
  ELTD1 WILD-TYPE 86 65
  ELTD1 MUTATED ELTD1 WILD-TYPE 
             17             151 
  ELTD1 MUTATED ELTD1 WILD-TYPE 
             10              65 
$`ELTD1 MUTATED`
TCGA-18-3409 TCGA-18-3419 TCGA-22-1002 TCGA-22-1012 TCGA-22-1016 TCGA-22-5473 
       79.46         1.61         4.31        14.10        27.02        63.52 
TCGA-33-4566 TCGA-34-5239 TCGA-37-3783 TCGA-37-4133 TCGA-43-5668 TCGA-56-6546 
      173.79        23.24         3.95         7.82        11.47         1.02 
TCGA-60-2698 TCGA-60-2722 TCGA-60-2726 TCGA-66-2782 TCGA-85-6561 
       10.22        29.85        11.77        12.00         0.79 

$`ELTD1 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07         4.80        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3421 TCGA-18-4083 
       13.02        59.51        28.34        24.92        43.76         6.15 
TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 
        2.79        90.51         3.02        27.16       119.54        46.88 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 TCGA-21-5784 
       60.89        34.78        15.55         9.30        31.63        41.69 
TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1011 TCGA-22-4591 TCGA-22-4593 
       33.93        10.82         7.33         1.74        20.45        35.08 
TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 
       24.13        38.17        34.75        13.12        19.30        11.77 
TCGA-22-5471 TCGA-22-5472 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 
       31.73        64.90        14.60        44.22         0.79        71.34 
TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 
       11.74        30.08        62.86        56.32        16.60         7.63 
TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 
      114.05        97.94        43.10       103.53       141.34        14.07 
TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 
       19.76         2.63        61.61        32.84        50.24        67.79 
TCGA-34-5234 TCGA-34-5236 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 
       56.38         9.04        12.00        14.07        30.94        18.12 
TCGA-34-5929 TCGA-37-3789 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 
        4.96         0.43         6.81         0.39         3.39        74.07 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       44.71        68.58        55.17        70.03        60.76         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 
       24.33         1.94        27.35        15.58        35.64        35.70 
TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-6143 TCGA-43-6647 
       17.88        22.49        27.02        33.07        12.36        24.89 
TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 
       10.19         5.42         9.96        10.65        13.87         0.39 
TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-5898 TCGA-56-6545 
        0.39        29.95        28.93         0.10        18.25         2.04 
TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 
       21.70        80.42        49.48        66.51        41.39         9.01 
TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2723 
       56.91        35.34        42.61         3.16        32.28        35.90 
TCGA-60-2724 TCGA-60-2725 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 
       23.57        26.79        16.96        43.10        21.07         0.99 
TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 
        2.01         0.92         0.99         0.99        20.98        25.02 
TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 
        0.99         2.01         1.02         2.01         2.01        23.01 
TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 
       19.00         3.02         2.01        19.00        12.03         3.98 
TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 
       24.95         1.94        25.97        40.01        22.98         4.04 
TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 
        5.03        30.02        10.06        54.08         4.01        49.05 
TCGA-85-6560 
        0.36 

  ELTD1 MUTATED ELTD1 WILD-TYPE 
           0.79            0.10 
  ELTD1 MUTATED ELTD1 WILD-TYPE 
         173.79          141.34 
  ELTD1 MUTATED ELTD1 WILD-TYPE 
          11.77           21.07 
[1] "0.8 - 173.8 (11.8)" "0.1 - 141.3 (21.1)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
  "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-5898 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-56-6545      TCGA-56-6546      TCGA-60-2698      TCGA-60-2707 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" 
     TCGA-60-2708      TCGA-60-2709      TCGA-60-2710      TCGA-60-2711 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-60-2712      TCGA-60-2713      TCGA-60-2715      TCGA-60-2719 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-60-2720      TCGA-60-2721      TCGA-60-2722      TCGA-60-2723 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" 
     TCGA-60-2724      TCGA-60-2725      TCGA-60-2726      TCGA-66-2727 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" 
     TCGA-66-2734      TCGA-66-2742      TCGA-66-2744      TCGA-66-2754 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-66-2755      TCGA-66-2756      TCGA-66-2757      TCGA-66-2758 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-66-2759      TCGA-66-2763      TCGA-66-2765      TCGA-66-2766 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-66-2767      TCGA-66-2768      TCGA-66-2770      TCGA-66-2771 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-66-2773      TCGA-66-2777      TCGA-66-2778      TCGA-66-2780 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-66-2781      TCGA-66-2782      TCGA-66-2783      TCGA-66-2785 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-66-2786      TCGA-66-2787      TCGA-66-2788      TCGA-66-2789 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-66-2791      TCGA-66-2792      TCGA-66-2793      TCGA-66-2794 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-66-2795      TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
  "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-5898 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-56-6545      TCGA-56-6546      TCGA-60-2698      TCGA-60-2707 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" 
     TCGA-60-2708      TCGA-60-2709      TCGA-60-2710      TCGA-60-2711 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-60-2712      TCGA-60-2713      TCGA-60-2715      TCGA-60-2719 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-60-2720      TCGA-60-2721      TCGA-60-2722      TCGA-60-2723 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" 
     TCGA-60-2724      TCGA-60-2725      TCGA-60-2726      TCGA-66-2727 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" 
     TCGA-66-2734      TCGA-66-2742      TCGA-66-2744      TCGA-66-2754 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-66-2755      TCGA-66-2756      TCGA-66-2757      TCGA-66-2758 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-66-2759      TCGA-66-2763      TCGA-66-2765      TCGA-66-2766 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-66-2767      TCGA-66-2768      TCGA-66-2770      TCGA-66-2771 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-66-2773      TCGA-66-2777      TCGA-66-2778      TCGA-66-2780 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-66-2781      TCGA-66-2782      TCGA-66-2783      TCGA-66-2785 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-66-2786      TCGA-66-2787      TCGA-66-2788      TCGA-66-2789 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-66-2791      TCGA-66-2792      TCGA-66-2793      TCGA-66-2794 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-66-2795      TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
  "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-5898 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-56-6545      TCGA-56-6546      TCGA-60-2698      TCGA-60-2707 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" 
     TCGA-60-2708      TCGA-60-2709      TCGA-60-2710      TCGA-60-2711 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-60-2712      TCGA-60-2713      TCGA-60-2715      TCGA-60-2719 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-60-2720      TCGA-60-2721      TCGA-60-2722      TCGA-60-2723 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" 
     TCGA-60-2724      TCGA-60-2725      TCGA-60-2726      TCGA-66-2727 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" 
     TCGA-66-2734      TCGA-66-2742      TCGA-66-2744      TCGA-66-2754 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-66-2755      TCGA-66-2756      TCGA-66-2757      TCGA-66-2758 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-66-2759      TCGA-66-2763      TCGA-66-2765      TCGA-66-2766 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-66-2767      TCGA-66-2768      TCGA-66-2770      TCGA-66-2771 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-66-2773      TCGA-66-2777      TCGA-66-2778      TCGA-66-2780 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-66-2781      TCGA-66-2782      TCGA-66-2783      TCGA-66-2785 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-66-2786      TCGA-66-2787      TCGA-66-2788      TCGA-66-2789 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-66-2791      TCGA-66-2792      TCGA-66-2793      TCGA-66-2794 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-66-2795      TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" 
[1] "hr=" "1.4"
D13V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  ELTD1 MUTATED          1        4         4         4          2          2
  ELTD1 WILD-TYPE       26       65         9        22         22         12
                 vv
clus              STAGE IV
  ELTD1 MUTATED          0
  ELTD1 WILD-TYPE        3
D13V3, multiclass
                 vv
clus               T1  T2  T3  T4
  ELTD1 MUTATED     3   9   4   2
  ELTD1 WILD-TYPE  32 107  10  10
D13V4, multiclass
    clus
vv   ELTD1 MUTATED ELTD1 WILD-TYPE
  T1             3              32
  T2             9             107
  T3             4              10
  T4             2              10
                 vv
clus               N0  N1  N2  N3
  ELTD1 MUTATED    11   6   1   0
  ELTD1 WILD-TYPE 105  33  16   5
D13V5, multiclass
    clus
vv   ELTD1 MUTATED ELTD1 WILD-TYPE
  N0            11             105
  N1             6              33
  N2             1              16
  N3             0               5
                 vv
clus               M0  M1  MX
  ELTD1 MUTATED    17   0   1
  ELTD1 WILD-TYPE 147   3   5
D13V6, multiclass
    clus
vv   ELTD1 MUTATED ELTD1 WILD-TYPE
  M0            17             147
  M1             0               3
  MX             1               5
D13V7, binary
                 cls
clus                0   1
  ELTD1 MUTATED     1  17
  ELTD1 WILD-TYPE  45 114
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ELTD1 MUTATED      1   17
  ELTD1 WILD-TYPE   45  114
        clus
vv       ELTD1 MUTATED ELTD1 WILD-TYPE
  FEMALE             1              45
  MALE              17             114
D13V8, continuous
                 vv
clus              LUNG BASALOID SQUAMOUS CELL CARCINOMA
  ELTD1 MUTATED                                       1
  ELTD1 WILD-TYPE                                     4
                 vv
clus              LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  ELTD1 MUTATED                                        0
  ELTD1 WILD-TYPE                                      1
                 vv
clus              LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  ELTD1 MUTATED                                                            17
  ELTD1 WILD-TYPE                                                         154
D13V9, multiclass
                                                             clus
vv                                                            ELTD1 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   1
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            17
                                                             clus
vv                                                            ELTD1 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     4
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             154
D13V10, binary
                 cls
clus                0   1
  ELTD1 MUTATED     0  18
  ELTD1 WILD-TYPE   4 155
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ELTD1 MUTATED      0   18
  ELTD1 WILD-TYPE    4  155
     clus
vv    ELTD1 MUTATED ELTD1 WILD-TYPE
  NO              0               4
  YES            18             155
D13V11, continuous
D13V12, continuous
                 vv
clus               R0  R1  R2  RX
  ELTD1 MUTATED    13   0   0   2
  ELTD1 WILD-TYPE 133   2   4   8
D13V13, multiclass
    clus
vv   ELTD1 MUTATED ELTD1 WILD-TYPE
  R0            13             133
  R1             0               2
  R2             0               4
  RX             2               8

Clustering(14) Variable = ASCL4 MUTATION ANALYSIS
D14V1, survival
                 sevent
clus2              0  1
  ASCL4 MUTATED    2  3
  ASCL4 WILD-TYPE 91 72
  ASCL4 MUTATED ASCL4 WILD-TYPE 
              5             163 
  ASCL4 MUTATED ASCL4 WILD-TYPE 
              3              72 
$`ASCL4 MUTATED`
TCGA-22-4613 TCGA-33-4566 TCGA-37-4141 TCGA-66-2755 TCGA-66-2791 
       11.77       173.79         0.39         0.92         5.03 

$`ASCL4 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 
      119.54        46.88        60.89        34.78        15.55         9.30 
TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 
       31.63        41.69        33.93        10.82         7.33         4.31 
TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 
        1.74        14.10        27.02        20.45        35.08        24.13 
TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-5471 TCGA-22-5472 
       38.17        34.75        13.12        19.30        31.73        64.90 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 
       63.52        14.60        44.22         0.79        71.34        11.74 
TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 
       30.08        62.86        56.32        16.60         7.63       114.05 
TCGA-33-4538 TCGA-33-4547 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 
       97.94        43.10       103.53       141.34        14.07        19.76 
TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 
        2.63        61.61        32.84        50.24        67.79        56.38 
TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 
        9.04        23.24        12.00        14.07        30.94        18.12 
TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-5819 
        4.96         3.95         0.43         7.82         6.81         3.39 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 
       74.07        44.71        68.58        55.17        70.03        60.76 
TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 
        1.71        24.33         1.94        27.35        15.58        35.64 
TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 
       35.70        17.88        22.49        27.02        33.07        11.47 
TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 
       12.36        24.89        10.19         5.42         9.96        10.65 
TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 
       13.87         0.39         0.39        29.95        28.93         0.10 
TCGA-56-5898 TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 
       18.25         2.04         1.02        10.22        21.70        80.42 
TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 
       49.48        66.51        41.39         9.01        56.91        35.34 
TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 
       42.61         3.16        32.28        29.85        35.90        23.57 
TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 
       26.79        11.77        16.96        43.10        21.07         0.99 
TCGA-66-2754 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 
        2.01         0.99         0.99        20.98        25.02         0.99 
TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 
        2.01         1.02         2.01         2.01        23.01        19.00 
TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 
        3.02         2.01        19.00        12.03         3.98        12.00 
TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 
       24.95         1.94        25.97        40.01        22.98         4.04 
TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 
       30.02        10.06        54.08         4.01        49.05         0.36 
TCGA-85-6561 
        0.79 

  ASCL4 MUTATED ASCL4 WILD-TYPE 
           0.39            0.10 
  ASCL4 MUTATED ASCL4 WILD-TYPE 
         173.79          141.34 
  ASCL4 MUTATED ASCL4 WILD-TYPE 
           5.03           20.98 
[1] "0.4 - 173.8 (5.0)"  "0.1 - 141.3 (21.0)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
  "ASCL4 MUTATED" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"ASCL4 WILD-TYPE"   "ASCL4 MUTATED" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE"   "ASCL4 MUTATED" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-5898 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-56-6545      TCGA-56-6546      TCGA-60-2698      TCGA-60-2707 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-60-2708      TCGA-60-2709      TCGA-60-2710      TCGA-60-2711 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-60-2712      TCGA-60-2713      TCGA-60-2715      TCGA-60-2719 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-60-2720      TCGA-60-2721      TCGA-60-2722      TCGA-60-2723 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-60-2724      TCGA-60-2725      TCGA-60-2726      TCGA-66-2727 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-66-2734      TCGA-66-2742      TCGA-66-2744      TCGA-66-2754 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-66-2755      TCGA-66-2756      TCGA-66-2757      TCGA-66-2758 
  "ASCL4 MUTATED" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-66-2759      TCGA-66-2763      TCGA-66-2765      TCGA-66-2766 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-66-2767      TCGA-66-2768      TCGA-66-2770      TCGA-66-2771 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-66-2773      TCGA-66-2777      TCGA-66-2778      TCGA-66-2780 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-66-2781      TCGA-66-2782      TCGA-66-2783      TCGA-66-2785 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-66-2786      TCGA-66-2787      TCGA-66-2788      TCGA-66-2789 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-66-2791      TCGA-66-2792      TCGA-66-2793      TCGA-66-2794 
  "ASCL4 MUTATED" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-66-2795      TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
  "ASCL4 MUTATED" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"ASCL4 WILD-TYPE"   "ASCL4 MUTATED" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE"   "ASCL4 MUTATED" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-5898 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-56-6545      TCGA-56-6546      TCGA-60-2698      TCGA-60-2707 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-60-2708      TCGA-60-2709      TCGA-60-2710      TCGA-60-2711 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-60-2712      TCGA-60-2713      TCGA-60-2715      TCGA-60-2719 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-60-2720      TCGA-60-2721      TCGA-60-2722      TCGA-60-2723 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-60-2724      TCGA-60-2725      TCGA-60-2726      TCGA-66-2727 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-66-2734      TCGA-66-2742      TCGA-66-2744      TCGA-66-2754 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-66-2755      TCGA-66-2756      TCGA-66-2757      TCGA-66-2758 
  "ASCL4 MUTATED" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-66-2759      TCGA-66-2763      TCGA-66-2765      TCGA-66-2766 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-66-2767      TCGA-66-2768      TCGA-66-2770      TCGA-66-2771 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-66-2773      TCGA-66-2777      TCGA-66-2778      TCGA-66-2780 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-66-2781      TCGA-66-2782      TCGA-66-2783      TCGA-66-2785 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-66-2786      TCGA-66-2787      TCGA-66-2788      TCGA-66-2789 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-66-2791      TCGA-66-2792      TCGA-66-2793      TCGA-66-2794 
  "ASCL4 MUTATED" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-66-2795      TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
  "ASCL4 MUTATED" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"ASCL4 WILD-TYPE"   "ASCL4 MUTATED" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE"   "ASCL4 MUTATED" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-5898 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-56-6545      TCGA-56-6546      TCGA-60-2698      TCGA-60-2707 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-60-2708      TCGA-60-2709      TCGA-60-2710      TCGA-60-2711 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-60-2712      TCGA-60-2713      TCGA-60-2715      TCGA-60-2719 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-60-2720      TCGA-60-2721      TCGA-60-2722      TCGA-60-2723 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-60-2724      TCGA-60-2725      TCGA-60-2726      TCGA-66-2727 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-66-2734      TCGA-66-2742      TCGA-66-2744      TCGA-66-2754 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-66-2755      TCGA-66-2756      TCGA-66-2757      TCGA-66-2758 
  "ASCL4 MUTATED" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-66-2759      TCGA-66-2763      TCGA-66-2765      TCGA-66-2766 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-66-2767      TCGA-66-2768      TCGA-66-2770      TCGA-66-2771 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-66-2773      TCGA-66-2777      TCGA-66-2778      TCGA-66-2780 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-66-2781      TCGA-66-2782      TCGA-66-2783      TCGA-66-2785 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-66-2786      TCGA-66-2787      TCGA-66-2788      TCGA-66-2789 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-66-2791      TCGA-66-2792      TCGA-66-2793      TCGA-66-2794 
  "ASCL4 MUTATED" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-66-2795      TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
[1] "hr=" "1"  
D14V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  ASCL4 MUTATED          2        3         0         0          0          1
  ASCL4 WILD-TYPE       25       66        13        26         24         13
                 vv
clus              STAGE IV
  ASCL4 MUTATED          0
  ASCL4 WILD-TYPE        3
D14V3, multiclass
                 vv
clus               T1  T2  T3  T4
  ASCL4 MUTATED     2   4   0   0
  ASCL4 WILD-TYPE  33 112  14  12
D14V4, multiclass
    clus
vv   ASCL4 MUTATED ASCL4 WILD-TYPE
  T1             2              33
  T2             4             112
  T3             0              14
  T4             0              12
                 vv
clus               N0  N1  N2  N3
  ASCL4 MUTATED     5   0   0   1
  ASCL4 WILD-TYPE 111  39  17   4
D14V5, multiclass
    clus
vv   ASCL4 MUTATED ASCL4 WILD-TYPE
  N0             5             111
  N1             0              39
  N2             0              17
  N3             1               4
                 vv
clus               M0  M1  MX
  ASCL4 MUTATED     6   0   0
  ASCL4 WILD-TYPE 158   3   6
D14V6, multiclass
    clus
vv   ASCL4 MUTATED ASCL4 WILD-TYPE
  M0             6             158
  M1             0               3
  MX             0               6
D14V7, binary
                 cls
clus                0   1
  ASCL4 MUTATED     2   4
  ASCL4 WILD-TYPE  44 127
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ASCL4 MUTATED      2    4
  ASCL4 WILD-TYPE   44  127
        clus
vv       ASCL4 MUTATED ASCL4 WILD-TYPE
  FEMALE             2              44
  MALE               4             127
D14V8, continuous
[1] "Remove cluster labels:" "ASCL4 MUTATED"         
clus
  ASCL4 MUTATED ASCL4 WILD-TYPE 
              1              35 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3410      TCGA-18-3414 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-18-3419      TCGA-21-5782      TCGA-21-5787      TCGA-22-4591 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-22-4593      TCGA-22-4595      TCGA-22-4599      TCGA-22-4601 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-22-4604      TCGA-22-5472      TCGA-22-5473      TCGA-22-5474 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-22-5477      TCGA-22-5478      TCGA-22-5480      TCGA-22-5482 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-22-5485      TCGA-22-5489      TCGA-22-5491      TCGA-22-5492 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-34-5234      TCGA-37-4133      TCGA-37-4135      TCGA-37-5819 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-60-2698      TCGA-60-2712      TCGA-60-2715      TCGA-60-2725 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-60-2726      TCGA-70-6722      TCGA-70-6723 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
                 vv
clus              LUNG BASALOID SQUAMOUS CELL CARCINOMA
  ASCL4 MUTATED                                       0
  ASCL4 WILD-TYPE                                     5
                 vv
clus              LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  ASCL4 MUTATED                                        0
  ASCL4 WILD-TYPE                                      1
                 vv
clus              LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  ASCL4 MUTATED                                                             6
  ASCL4 WILD-TYPE                                                         165
D14V9, multiclass
                                                             clus
vv                                                            ASCL4 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   0
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             6
                                                             clus
vv                                                            ASCL4 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     5
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             165
D14V10, binary
                 cls
clus                0   1
  ASCL4 MUTATED     0   6
  ASCL4 WILD-TYPE   4 167
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ASCL4 MUTATED      0    6
  ASCL4 WILD-TYPE    4  167
     clus
vv    ASCL4 MUTATED ASCL4 WILD-TYPE
  NO              0               4
  YES             6             167
D14V11, continuous
D14V12, continuous
                 vv
clus               R0  R1  R2  RX
  ASCL4 MUTATED     5   1   0   0
  ASCL4 WILD-TYPE 141   1   4  10
D14V13, multiclass
    clus
vv   ASCL4 MUTATED ASCL4 WILD-TYPE
  R0             5             141
  R1             1               1
  R2             0               4
  RX             0              10

Clustering(15) Variable = OR2G6 MUTATION ANALYSIS
D15V1, survival
                 sevent
clus2              0  1
  OR2G6 MUTATED   10  5
  OR2G6 WILD-TYPE 83 70
  OR2G6 MUTATED OR2G6 WILD-TYPE 
             15             153 
  OR2G6 MUTATED OR2G6 WILD-TYPE 
              5              70 
$`OR2G6 MUTATED`
TCGA-18-3409 TCGA-22-4599 TCGA-33-4583 TCGA-34-2600 TCGA-37-3789 TCGA-37-4135 
       79.46        38.17       141.34        61.61         0.43         6.81 
TCGA-39-5027 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-60-2698 TCGA-66-2759 
       60.76        33.07        11.47        12.36        10.22        25.02 
TCGA-66-2771 TCGA-66-2782 TCGA-85-6560 
       19.00        12.00         0.36 

$`OR2G6 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07         4.80        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       13.02        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       119.54 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 
       46.88        60.89        34.78        15.55         9.30        31.63 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 
       41.69        33.93        10.82         7.33         4.31         1.74 
TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4601 
       14.10        27.02        20.45        35.08        24.13        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       13.12        19.30        11.77        31.73        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 
       14.60        44.22         0.79        71.34        11.74        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       62.86        56.32        16.60         7.63       114.05        97.94 
TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 
       43.10       173.79       103.53        14.07        19.76         2.63 
TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 
       32.84        50.24        67.79        56.38         9.04        23.24 
TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 
       12.00        14.07        30.94        18.12         4.96         3.95 
TCGA-37-4133 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 
        7.82         0.39         3.39        74.07        44.71        68.58 
TCGA-39-5022 TCGA-39-5024 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 
       55.17        70.03         1.71        24.33         1.94        27.35 
TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 
       15.58        35.64        35.70        17.88        22.49        27.02 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 
       24.89        10.19         5.42         9.96        10.65        13.87 
TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-5898 
        0.39         0.39        29.95        28.93         0.10        18.25 
TCGA-56-6545 TCGA-56-6546 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 
        2.04         1.02        21.70        80.42        49.48        66.51 
TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 
       41.39         9.01        56.91        35.34        42.61         3.16 
TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 
       32.28        29.85        35.90        23.57        26.79        11.77 
TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 
       16.96        43.10        21.07         0.99         2.01         0.92 
TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 
        0.99         0.99        20.98         0.99         2.01         1.02 
TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 
        2.01         2.01        23.01         3.02         2.01        19.00 
TCGA-66-2780 TCGA-66-2781 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 
       12.03         3.98        24.95         1.94        25.97        40.01 
TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 
       22.98         4.04         5.03        30.02        10.06        54.08 
TCGA-66-2795 TCGA-66-2800 TCGA-85-6561 
        4.01        49.05         0.79 

  OR2G6 MUTATED OR2G6 WILD-TYPE 
           0.36            0.10 
  OR2G6 MUTATED OR2G6 WILD-TYPE 
         141.34          173.79 
  OR2G6 MUTATED OR2G6 WILD-TYPE 
          19.00           20.45 
[1] "0.4 - 141.3 (19.0)" "0.1 - 173.8 (20.4)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE"   "OR2G6 MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
  "OR2G6 MUTATED" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE"   "OR2G6 MUTATED" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE"   "OR2G6 MUTATED" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
  "OR2G6 MUTATED" "OR2G6 WILD-TYPE"   "OR2G6 MUTATED" "OR2G6 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE"   "OR2G6 MUTATED" "OR2G6 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR2G6 WILD-TYPE"   "OR2G6 MUTATED"   "OR2G6 MUTATED"   "OR2G6 MUTATED" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-5898 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-56-6545      TCGA-56-6546      TCGA-60-2698      TCGA-60-2707 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE"   "OR2G6 MUTATED" "OR2G6 WILD-TYPE" 
     TCGA-60-2708      TCGA-60-2709      TCGA-60-2710      TCGA-60-2711 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-60-2712      TCGA-60-2713      TCGA-60-2715      TCGA-60-2719 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-60-2720      TCGA-60-2721      TCGA-60-2722      TCGA-60-2723 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-60-2724      TCGA-60-2725      TCGA-60-2726      TCGA-66-2727 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-66-2734      TCGA-66-2742      TCGA-66-2744      TCGA-66-2754 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-66-2755      TCGA-66-2756      TCGA-66-2757      TCGA-66-2758 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-66-2759      TCGA-66-2763      TCGA-66-2765      TCGA-66-2766 
  "OR2G6 MUTATED" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-66-2767      TCGA-66-2768      TCGA-66-2770      TCGA-66-2771 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE"   "OR2G6 MUTATED" 
     TCGA-66-2773      TCGA-66-2777      TCGA-66-2778      TCGA-66-2780 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-66-2781      TCGA-66-2782      TCGA-66-2783      TCGA-66-2785 
"OR2G6 WILD-TYPE"   "OR2G6 MUTATED" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-66-2786      TCGA-66-2787      TCGA-66-2788      TCGA-66-2789 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-66-2791      TCGA-66-2792      TCGA-66-2793      TCGA-66-2794 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-66-2795      TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE"   "OR2G6 MUTATED" "OR2G6 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE"   "OR2G6 MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
  "OR2G6 MUTATED" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE"   "OR2G6 MUTATED" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE"   "OR2G6 MUTATED" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
  "OR2G6 MUTATED" "OR2G6 WILD-TYPE"   "OR2G6 MUTATED" "OR2G6 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE"   "OR2G6 MUTATED" "OR2G6 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR2G6 WILD-TYPE"   "OR2G6 MUTATED"   "OR2G6 MUTATED"   "OR2G6 MUTATED" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-5898 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-56-6545      TCGA-56-6546      TCGA-60-2698      TCGA-60-2707 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE"   "OR2G6 MUTATED" "OR2G6 WILD-TYPE" 
     TCGA-60-2708      TCGA-60-2709      TCGA-60-2710      TCGA-60-2711 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-60-2712      TCGA-60-2713      TCGA-60-2715      TCGA-60-2719 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-60-2720      TCGA-60-2721      TCGA-60-2722      TCGA-60-2723 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-60-2724      TCGA-60-2725      TCGA-60-2726      TCGA-66-2727 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-66-2734      TCGA-66-2742      TCGA-66-2744      TCGA-66-2754 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-66-2755      TCGA-66-2756      TCGA-66-2757      TCGA-66-2758 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-66-2759      TCGA-66-2763      TCGA-66-2765      TCGA-66-2766 
  "OR2G6 MUTATED" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-66-2767      TCGA-66-2768      TCGA-66-2770      TCGA-66-2771 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE"   "OR2G6 MUTATED" 
     TCGA-66-2773      TCGA-66-2777      TCGA-66-2778      TCGA-66-2780 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-66-2781      TCGA-66-2782      TCGA-66-2783      TCGA-66-2785 
"OR2G6 WILD-TYPE"   "OR2G6 MUTATED" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-66-2786      TCGA-66-2787      TCGA-66-2788      TCGA-66-2789 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-66-2791      TCGA-66-2792      TCGA-66-2793      TCGA-66-2794 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-66-2795      TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE"   "OR2G6 MUTATED" "OR2G6 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE"   "OR2G6 MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
  "OR2G6 MUTATED" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE"   "OR2G6 MUTATED" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE"   "OR2G6 MUTATED" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
  "OR2G6 MUTATED" "OR2G6 WILD-TYPE"   "OR2G6 MUTATED" "OR2G6 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE"   "OR2G6 MUTATED" "OR2G6 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR2G6 WILD-TYPE"   "OR2G6 MUTATED"   "OR2G6 MUTATED"   "OR2G6 MUTATED" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-5898 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-56-6545      TCGA-56-6546      TCGA-60-2698      TCGA-60-2707 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE"   "OR2G6 MUTATED" "OR2G6 WILD-TYPE" 
     TCGA-60-2708      TCGA-60-2709      TCGA-60-2710      TCGA-60-2711 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-60-2712      TCGA-60-2713      TCGA-60-2715      TCGA-60-2719 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-60-2720      TCGA-60-2721      TCGA-60-2722      TCGA-60-2723 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-60-2724      TCGA-60-2725      TCGA-60-2726      TCGA-66-2727 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-66-2734      TCGA-66-2742      TCGA-66-2744      TCGA-66-2754 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-66-2755      TCGA-66-2756      TCGA-66-2757      TCGA-66-2758 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-66-2759      TCGA-66-2763      TCGA-66-2765      TCGA-66-2766 
  "OR2G6 MUTATED" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-66-2767      TCGA-66-2768      TCGA-66-2770      TCGA-66-2771 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE"   "OR2G6 MUTATED" 
     TCGA-66-2773      TCGA-66-2777      TCGA-66-2778      TCGA-66-2780 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-66-2781      TCGA-66-2782      TCGA-66-2783      TCGA-66-2785 
"OR2G6 WILD-TYPE"   "OR2G6 MUTATED" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-66-2786      TCGA-66-2787      TCGA-66-2788      TCGA-66-2789 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-66-2791      TCGA-66-2792      TCGA-66-2793      TCGA-66-2794 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-66-2795      TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE"   "OR2G6 MUTATED" "OR2G6 WILD-TYPE" 
[1] "hr=" "1.6"
D15V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  OR2G6 MUTATED          2        5         1         4          2          1
  OR2G6 WILD-TYPE       25       64        12        22         22         13
                 vv
clus              STAGE IV
  OR2G6 MUTATED          0
  OR2G6 WILD-TYPE        3
D15V3, multiclass
                 vv
clus               T1  T2  T3  T4
  OR2G6 MUTATED     4  10   1   1
  OR2G6 WILD-TYPE  31 106  13  11
D15V4, multiclass
    clus
vv   OR2G6 MUTATED OR2G6 WILD-TYPE
  T1             4              31
  T2            10             106
  T3             1              13
  T4             1              11
                 vv
clus               N0  N1  N2  N3
  OR2G6 MUTATED    11   4   1   0
  OR2G6 WILD-TYPE 105  35  16   5
D15V5, multiclass
    clus
vv   OR2G6 MUTATED OR2G6 WILD-TYPE
  N0            11             105
  N1             4              35
  N2             1              16
  N3             0               5
                 vv
clus               M0  M1  MX
  OR2G6 MUTATED    15   0   0
  OR2G6 WILD-TYPE 149   3   6
D15V6, multiclass
    clus
vv   OR2G6 MUTATED OR2G6 WILD-TYPE
  M0            15             149
  M1             0               3
  MX             0               6
D15V7, binary
                 cls
clus                0   1
  OR2G6 MUTATED     2  14
  OR2G6 WILD-TYPE  44 117
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2G6 MUTATED      2   14
  OR2G6 WILD-TYPE   44  117
        clus
vv       OR2G6 MUTATED OR2G6 WILD-TYPE
  FEMALE             2              44
  MALE              14             117
D15V8, continuous
                 vv
clus              LUNG BASALOID SQUAMOUS CELL CARCINOMA
  OR2G6 MUTATED                                       2
  OR2G6 WILD-TYPE                                     3
                 vv
clus              LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  OR2G6 MUTATED                                        0
  OR2G6 WILD-TYPE                                      1
                 vv
clus              LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  OR2G6 MUTATED                                                            14
  OR2G6 WILD-TYPE                                                         157
D15V9, multiclass
                                                             clus
vv                                                            OR2G6 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   2
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            14
                                                             clus
vv                                                            OR2G6 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     3
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             157
D15V10, binary
                 cls
clus                0   1
  OR2G6 MUTATED     0  16
  OR2G6 WILD-TYPE   4 157
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2G6 MUTATED      0   16
  OR2G6 WILD-TYPE    4  157
     clus
vv    OR2G6 MUTATED OR2G6 WILD-TYPE
  NO              0               4
  YES            16             157
D15V11, continuous
D15V12, continuous
                 vv
clus               R0  R1  R2  RX
  OR2G6 MUTATED    12   1   0   2
  OR2G6 WILD-TYPE 134   1   4   8
D15V13, multiclass
    clus
vv   OR2G6 MUTATED OR2G6 WILD-TYPE
  R0            12             134
  R1             1               1
  R2             0               4
  RX             2               8

Clustering(16) Variable = HLA-A MUTATION ANALYSIS
D16V1, survival
                 sevent
clus2              0  1
  HLA-A MUTATED    4  2
  HLA-A WILD-TYPE 89 73
  HLA-A MUTATED HLA-A WILD-TYPE 
              6             162 
  HLA-A MUTATED HLA-A WILD-TYPE 
              2              73 
$`HLA-A MUTATED`
TCGA-18-3419 TCGA-21-5782 TCGA-37-5819 TCGA-39-5024 TCGA-60-2698 TCGA-66-2786 
        1.61        31.63         3.39        70.03        10.22        25.97 

$`HLA-A WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3421 
       11.34        13.02        59.51        28.34        24.92        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       119.54 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5784 
       46.88        60.89        34.78        15.55         9.30        41.69 
TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 
       33.93        10.82         7.33         4.31         1.74        14.10 
TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 
       27.02        20.45        35.08        24.13        38.17        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       13.12        19.30        11.77        31.73        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 
       14.60        44.22         0.79        71.34        11.74        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       62.86        56.32        16.60         7.63       114.05        97.94 
TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 
       43.10       173.79       103.53       141.34        14.07        19.76 
TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 
        2.63        61.61        32.84        50.24        67.79        56.38 
TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 
        9.04        23.24        12.00        14.07        30.94        18.12 
TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 
        4.96         3.95         0.43         7.82         6.81         0.39 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5027 TCGA-39-5028 
       74.07        44.71        68.58        55.17        60.76         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 
       24.33         1.94        27.35        15.58        35.64        35.70 
TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 
       17.88        22.49        27.02        33.07        11.47        12.36 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 
       24.89        10.19         5.42         9.96        10.65        13.87 
TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-5898 
        0.39         0.39        29.95        28.93         0.10        18.25 
TCGA-56-6545 TCGA-56-6546 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 
        2.04         1.02        21.70        80.42        49.48        66.51 
TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 
       41.39         9.01        56.91        35.34        42.61         3.16 
TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 
       32.28        29.85        35.90        23.57        26.79        11.77 
TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 
       16.96        43.10        21.07         0.99         2.01         0.92 
TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 
        0.99         0.99        20.98        25.02         0.99         2.01 
TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 
        1.02         2.01         2.01        23.01        19.00         3.02 
TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 
        2.01        19.00        12.03         3.98        12.00        24.95 
TCGA-66-2785 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 
        1.94        40.01        22.98         4.04         5.03        30.02 
TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       10.06        54.08         4.01        49.05         0.36         0.79 

  HLA-A MUTATED HLA-A WILD-TYPE 
           1.61            0.10 
  HLA-A MUTATED HLA-A WILD-TYPE 
          70.03          173.79 
  HLA-A MUTATED HLA-A WILD-TYPE 
         18.095          20.105 
[1] "1.6 - 70.0 (18.1)"  "0.1 - 173.8 (20.1)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE"   "HLA-A MUTATED" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
  "HLA-A MUTATED" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
  "HLA-A MUTATED" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"HLA-A WILD-TYPE"   "HLA-A MUTATED" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-5898 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-56-6545      TCGA-56-6546      TCGA-60-2698      TCGA-60-2707 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE"   "HLA-A MUTATED" "HLA-A WILD-TYPE" 
     TCGA-60-2708      TCGA-60-2709      TCGA-60-2710      TCGA-60-2711 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-60-2712      TCGA-60-2713      TCGA-60-2715      TCGA-60-2719 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-60-2720      TCGA-60-2721      TCGA-60-2722      TCGA-60-2723 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-60-2724      TCGA-60-2725      TCGA-60-2726      TCGA-66-2727 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-66-2734      TCGA-66-2742      TCGA-66-2744      TCGA-66-2754 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-66-2755      TCGA-66-2756      TCGA-66-2757      TCGA-66-2758 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-66-2759      TCGA-66-2763      TCGA-66-2765      TCGA-66-2766 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-66-2767      TCGA-66-2768      TCGA-66-2770      TCGA-66-2771 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-66-2773      TCGA-66-2777      TCGA-66-2778      TCGA-66-2780 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-66-2781      TCGA-66-2782      TCGA-66-2783      TCGA-66-2785 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-66-2786      TCGA-66-2787      TCGA-66-2788      TCGA-66-2789 
  "HLA-A MUTATED" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-66-2791      TCGA-66-2792      TCGA-66-2793      TCGA-66-2794 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-66-2795      TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE"   "HLA-A MUTATED" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
  "HLA-A MUTATED" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
  "HLA-A MUTATED" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"HLA-A WILD-TYPE"   "HLA-A MUTATED" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-5898 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-56-6545      TCGA-56-6546      TCGA-60-2698      TCGA-60-2707 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE"   "HLA-A MUTATED" "HLA-A WILD-TYPE" 
     TCGA-60-2708      TCGA-60-2709      TCGA-60-2710      TCGA-60-2711 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-60-2712      TCGA-60-2713      TCGA-60-2715      TCGA-60-2719 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-60-2720      TCGA-60-2721      TCGA-60-2722      TCGA-60-2723 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-60-2724      TCGA-60-2725      TCGA-60-2726      TCGA-66-2727 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-66-2734      TCGA-66-2742      TCGA-66-2744      TCGA-66-2754 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-66-2755      TCGA-66-2756      TCGA-66-2757      TCGA-66-2758 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-66-2759      TCGA-66-2763      TCGA-66-2765      TCGA-66-2766 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-66-2767      TCGA-66-2768      TCGA-66-2770      TCGA-66-2771 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-66-2773      TCGA-66-2777      TCGA-66-2778      TCGA-66-2780 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-66-2781      TCGA-66-2782      TCGA-66-2783      TCGA-66-2785 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-66-2786      TCGA-66-2787      TCGA-66-2788      TCGA-66-2789 
  "HLA-A MUTATED" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-66-2791      TCGA-66-2792      TCGA-66-2793      TCGA-66-2794 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-66-2795      TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE"   "HLA-A MUTATED" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
  "HLA-A MUTATED" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
  "HLA-A MUTATED" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"HLA-A WILD-TYPE"   "HLA-A MUTATED" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-5898 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-56-6545      TCGA-56-6546      TCGA-60-2698      TCGA-60-2707 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE"   "HLA-A MUTATED" "HLA-A WILD-TYPE" 
     TCGA-60-2708      TCGA-60-2709      TCGA-60-2710      TCGA-60-2711 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-60-2712      TCGA-60-2713      TCGA-60-2715      TCGA-60-2719 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-60-2720      TCGA-60-2721      TCGA-60-2722      TCGA-60-2723 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-60-2724      TCGA-60-2725      TCGA-60-2726      TCGA-66-2727 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-66-2734      TCGA-66-2742      TCGA-66-2744      TCGA-66-2754 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-66-2755      TCGA-66-2756      TCGA-66-2757      TCGA-66-2758 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-66-2759      TCGA-66-2763      TCGA-66-2765      TCGA-66-2766 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-66-2767      TCGA-66-2768      TCGA-66-2770      TCGA-66-2771 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-66-2773      TCGA-66-2777      TCGA-66-2778      TCGA-66-2780 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-66-2781      TCGA-66-2782      TCGA-66-2783      TCGA-66-2785 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-66-2786      TCGA-66-2787      TCGA-66-2788      TCGA-66-2789 
  "HLA-A MUTATED" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-66-2791      TCGA-66-2792      TCGA-66-2793      TCGA-66-2794 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-66-2795      TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
[1] "hr=" "1.2"
D16V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  HLA-A MUTATED          1        1         0         2          2          0
  HLA-A WILD-TYPE       26       68        13        24         22         14
                 vv
clus              STAGE IV
  HLA-A MUTATED          0
  HLA-A WILD-TYPE        3
D16V3, multiclass
                 vv
clus               T1  T2  T3  T4
  HLA-A MUTATED     1   5   0   0
  HLA-A WILD-TYPE  34 111  14  12
D16V4, multiclass
    clus
vv   HLA-A MUTATED HLA-A WILD-TYPE
  T1             1              34
  T2             5             111
  T3             0              14
  T4             0              12
                 vv
clus               N0  N1  N2  N3
  HLA-A MUTATED     2   2   2   0
  HLA-A WILD-TYPE 114  37  15   5
D16V5, multiclass
    clus
vv   HLA-A MUTATED HLA-A WILD-TYPE
  N0             2             114
  N1             2              37
  N2             2              15
  N3             0               5
                 vv
clus               M0  M1  MX
  HLA-A MUTATED     6   0   0
  HLA-A WILD-TYPE 158   3   6
D16V6, multiclass
    clus
vv   HLA-A MUTATED HLA-A WILD-TYPE
  M0             6             158
  M1             0               3
  MX             0               6
D16V7, binary
                 cls
clus                0   1
  HLA-A MUTATED     3   3
  HLA-A WILD-TYPE  43 128
[1] "tbl2"
                 cls
clus              [,1] [,2]
  HLA-A MUTATED      3    3
  HLA-A WILD-TYPE   43  128
        clus
vv       HLA-A MUTATED HLA-A WILD-TYPE
  FEMALE             3              43
  MALE               3             128
D16V8, continuous
                 vv
clus              LUNG BASALOID SQUAMOUS CELL CARCINOMA
  HLA-A MUTATED                                       0
  HLA-A WILD-TYPE                                     5
                 vv
clus              LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  HLA-A MUTATED                                        0
  HLA-A WILD-TYPE                                      1
                 vv
clus              LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  HLA-A MUTATED                                                             6
  HLA-A WILD-TYPE                                                         165
D16V9, multiclass
                                                             clus
vv                                                            HLA-A MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   0
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             6
                                                             clus
vv                                                            HLA-A WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     5
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             165
D16V10, binary
                 cls
clus                0   1
  HLA-A MUTATED     0   6
  HLA-A WILD-TYPE   4 167
[1] "tbl2"
                 cls
clus              [,1] [,2]
  HLA-A MUTATED      0    6
  HLA-A WILD-TYPE    4  167
     clus
vv    HLA-A MUTATED HLA-A WILD-TYPE
  NO              0               4
  YES             6             167
D16V11, continuous
D16V12, continuous
                 vv
clus               R0  R1  R2  RX
  HLA-A MUTATED     5   0   0   1
  HLA-A WILD-TYPE 141   2   4   9
D16V13, multiclass
    clus
vv   HLA-A MUTATED HLA-A WILD-TYPE
  R0             5             141
  R1             0               2
  R2             0               4
  RX             1               9

Clustering(17) Variable = NOTCH1 MUTATION ANALYSIS
D17V1, survival
                  sevent
clus2               0  1
  NOTCH1 MUTATED    5  9
  NOTCH1 WILD-TYPE 88 66
  NOTCH1 MUTATED NOTCH1 WILD-TYPE 
              14              154 
  NOTCH1 MUTATED NOTCH1 WILD-TYPE 
               9               66 
$`NOTCH1 MUTATED`
TCGA-18-5592 TCGA-21-5782 TCGA-22-1016 TCGA-22-5480 TCGA-22-5485 TCGA-22-5491 
        3.02        31.63        27.02        71.34        30.08        56.32 
TCGA-22-5492 TCGA-33-4583 TCGA-39-5037 TCGA-51-4079 TCGA-66-2759 TCGA-66-2789 
       16.60       141.34        35.70         0.39        25.02         4.04 
TCGA-66-2793 TCGA-66-2795 
       10.06         4.01 

$`NOTCH1 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5595 TCGA-21-1070 
       43.76         6.15         2.79        90.51        27.16       119.54 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5784 
       46.88        60.89        34.78        15.55         9.30        41.69 
TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 
       33.93        10.82         7.33         4.31         1.74        14.10 
TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 
       20.45        35.08        24.13        38.17        34.75        13.12 
TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 
       19.30        11.77        31.73        64.90        63.52        14.60 
TCGA-22-5477 TCGA-22-5478 TCGA-22-5482 TCGA-22-5489 TCGA-33-4532 TCGA-33-4533 
       44.22         0.79        11.74        62.86         7.63       114.05 
TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4586 TCGA-33-6737 
       97.94        43.10       173.79       103.53        14.07        19.76 
TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 
        2.63        61.61        32.84        50.24        67.79        56.38 
TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 
        9.04        23.24        12.00        14.07        30.94        18.12 
TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 
        4.96         3.95         0.43         7.82         6.81         0.39 
TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 
        3.39        74.07        44.71        68.58        55.17        70.03 
TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 
       60.76         1.71        24.33         1.94        27.35        15.58 
TCGA-39-5036 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 
       35.64        17.88        22.49        27.02        33.07        11.47 
TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 
       12.36        24.89        10.19         5.42         9.96        10.65 
TCGA-46-6026 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-5898 
       13.87         0.39        29.95        28.93         0.10        18.25 
TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 
        2.04         1.02        10.22        21.70        80.42        49.48 
TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 
       66.51        41.39         9.01        56.91        35.34        42.61 
TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 
        3.16        32.28        29.85        35.90        23.57        26.79 
TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 
       11.77        16.96        43.10        21.07         0.99         2.01 
TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2763 TCGA-66-2765 
        0.92         0.99         0.99        20.98         0.99         2.01 
TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 
        1.02         2.01         2.01        23.01        19.00         3.02 
TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 
        2.01        19.00        12.03         3.98        12.00        24.95 
TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2791 TCGA-66-2792 
        1.94        25.97        40.01        22.98         5.03        30.02 
TCGA-66-2794 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       54.08        49.05         0.36         0.79 

  NOTCH1 MUTATED NOTCH1 WILD-TYPE 
            0.39             0.10 
  NOTCH1 MUTATED NOTCH1 WILD-TYPE 
          141.34           173.79 
  NOTCH1 MUTATED NOTCH1 WILD-TYPE 
           26.02            19.53 
[1] "0.4 - 141.3 (26.0)" "0.1 - 173.8 (19.5)"
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
  "NOTCH1 MUTATED" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
  "NOTCH1 MUTATED" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
  "NOTCH1 MUTATED" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE"   "NOTCH1 MUTATED" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"NOTCH1 WILD-TYPE"   "NOTCH1 MUTATED" "NOTCH1 WILD-TYPE"   "NOTCH1 MUTATED" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
  "NOTCH1 MUTATED" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE"   "NOTCH1 MUTATED" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"NOTCH1 WILD-TYPE"   "NOTCH1 MUTATED" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE"   "NOTCH1 MUTATED" "NOTCH1 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-5898 
"NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" 
      TCGA-56-6545       TCGA-56-6546       TCGA-60-2698       TCGA-60-2707 
"NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" 
      TCGA-60-2708       TCGA-60-2709       TCGA-60-2710       TCGA-60-2711 
"NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" 
      TCGA-60-2712       TCGA-60-2713       TCGA-60-2715       TCGA-60-2719 
"NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" 
      TCGA-60-2720       TCGA-60-2721       TCGA-60-2722       TCGA-60-2723 
"NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" 
      TCGA-60-2724       TCGA-60-2725       TCGA-60-2726       TCGA-66-2727 
"NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" 
      TCGA-66-2734       TCGA-66-2742       TCGA-66-2744       TCGA-66-2754 
"NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" 
      TCGA-66-2755       TCGA-66-2756       TCGA-66-2757       TCGA-66-2758 
"NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" 
      TCGA-66-2759       TCGA-66-2763       TCGA-66-2765       TCGA-66-2766 
  "NOTCH1 MUTATED" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" 
      TCGA-66-2767       TCGA-66-2768       TCGA-66-2770       TCGA-66-2771 
"NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" 
      TCGA-66-2773       TCGA-66-2777       TCGA-66-2778       TCGA-66-2780 
"NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" 
      TCGA-66-2781       TCGA-66-2782       TCGA-66-2783       TCGA-66-2785 
"NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" 
      TCGA-66-2786       TCGA-66-2787       TCGA-66-2788       TCGA-66-2789 
"NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE"   "NOTCH1 MUTATED" 
      TCGA-66-2791       TCGA-66-2792       TCGA-66-2793       TCGA-66-2794 
"NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE"   "NOTCH1 MUTATED" "NOTCH1 WILD-TYPE" 
      TCGA-66-2795       TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
  "NOTCH1 MUTATED" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
  "NOTCH1 MUTATED" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
  "NOTCH1 MUTATED" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
  "NOTCH1 MUTATED" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE"   "NOTCH1 MUTATED" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"NOTCH1 WILD-TYPE"   "NOTCH1 MUTATED" "NOTCH1 WILD-TYPE"   "NOTCH1 MUTATED" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
  "NOTCH1 MUTATED" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE"   "NOTCH1 MUTATED" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"NOTCH1 WILD-TYPE"   "NOTCH1 MUTATED" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE"   "NOTCH1 MUTATED" "NOTCH1 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-5898 
"NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" 
      TCGA-56-6545       TCGA-56-6546       TCGA-60-2698       TCGA-60-2707 
"NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" 
      TCGA-60-2708       TCGA-60-2709       TCGA-60-2710       TCGA-60-2711 
"NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" 
      TCGA-60-2712       TCGA-60-2713       TCGA-60-2715       TCGA-60-2719 
"NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" 
      TCGA-60-2720       TCGA-60-2721       TCGA-60-2722       TCGA-60-2723 
"NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" 
      TCGA-60-2724       TCGA-60-2725       TCGA-60-2726       TCGA-66-2727 
"NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" 
      TCGA-66-2734       TCGA-66-2742       TCGA-66-2744       TCGA-66-2754 
"NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" 
      TCGA-66-2755       TCGA-66-2756       TCGA-66-2757       TCGA-66-2758 
"NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" 
      TCGA-66-2759       TCGA-66-2763       TCGA-66-2765       TCGA-66-2766 
  "NOTCH1 MUTATED" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" 
      TCGA-66-2767       TCGA-66-2768       TCGA-66-2770       TCGA-66-2771 
"NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" 
      TCGA-66-2773       TCGA-66-2777       TCGA-66-2778       TCGA-66-2780 
"NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" 
      TCGA-66-2781       TCGA-66-2782       TCGA-66-2783       TCGA-66-2785 
"NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" 
      TCGA-66-2786       TCGA-66-2787       TCGA-66-2788       TCGA-66-2789 
"NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE"   "NOTCH1 MUTATED" 
      TCGA-66-2791       TCGA-66-2792       TCGA-66-2793       TCGA-66-2794 
"NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE"   "NOTCH1 MUTATED" "NOTCH1 WILD-TYPE" 
      TCGA-66-2795       TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
  "NOTCH1 MUTATED" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
  "NOTCH1 MUTATED" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
  "NOTCH1 MUTATED" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
  "NOTCH1 MUTATED" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE"   "NOTCH1 MUTATED" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"NOTCH1 WILD-TYPE"   "NOTCH1 MUTATED" "NOTCH1 WILD-TYPE"   "NOTCH1 MUTATED" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
  "NOTCH1 MUTATED" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE"   "NOTCH1 MUTATED" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"NOTCH1 WILD-TYPE"   "NOTCH1 MUTATED" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE"   "NOTCH1 MUTATED" "NOTCH1 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-5898 
"NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" 
      TCGA-56-6545       TCGA-56-6546       TCGA-60-2698       TCGA-60-2707 
"NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" 
      TCGA-60-2708       TCGA-60-2709       TCGA-60-2710       TCGA-60-2711 
"NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" 
      TCGA-60-2712       TCGA-60-2713       TCGA-60-2715       TCGA-60-2719 
"NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" 
      TCGA-60-2720       TCGA-60-2721       TCGA-60-2722       TCGA-60-2723 
"NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" 
      TCGA-60-2724       TCGA-60-2725       TCGA-60-2726       TCGA-66-2727 
"NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" 
      TCGA-66-2734       TCGA-66-2742       TCGA-66-2744       TCGA-66-2754 
"NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" 
      TCGA-66-2755       TCGA-66-2756       TCGA-66-2757       TCGA-66-2758 
"NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" 
      TCGA-66-2759       TCGA-66-2763       TCGA-66-2765       TCGA-66-2766 
  "NOTCH1 MUTATED" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" 
      TCGA-66-2767       TCGA-66-2768       TCGA-66-2770       TCGA-66-2771 
"NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" 
      TCGA-66-2773       TCGA-66-2777       TCGA-66-2778       TCGA-66-2780 
"NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" 
      TCGA-66-2781       TCGA-66-2782       TCGA-66-2783       TCGA-66-2785 
"NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" 
      TCGA-66-2786       TCGA-66-2787       TCGA-66-2788       TCGA-66-2789 
"NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE"   "NOTCH1 MUTATED" 
      TCGA-66-2791       TCGA-66-2792       TCGA-66-2793       TCGA-66-2794 
"NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE"   "NOTCH1 MUTATED" "NOTCH1 WILD-TYPE" 
      TCGA-66-2795       TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
  "NOTCH1 MUTATED" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" "NOTCH1 WILD-TYPE" 
[1] "hr=" "1.3"
D17V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  NOTCH1 MUTATED          4        3         1         1          2          3
  NOTCH1 WILD-TYPE       23       66        12        25         22         11
                  vv
clus               STAGE IV
  NOTCH1 MUTATED          0
  NOTCH1 WILD-TYPE        3
D17V3, multiclass
                  vv
clus                T1  T2  T3  T4
  NOTCH1 MUTATED     6   5   1   2
  NOTCH1 WILD-TYPE  29 111  13  10
D17V4, multiclass
    clus
vv   NOTCH1 MUTATED NOTCH1 WILD-TYPE
  T1              6               29
  T2              5              111
  T3              1               13
  T4              2               10
                  vv
clus                N0  N1  N2  N3
  NOTCH1 MUTATED     8   3   2   1
  NOTCH1 WILD-TYPE 108  36  15   4
D17V5, multiclass
    clus
vv   NOTCH1 MUTATED NOTCH1 WILD-TYPE
  N0              8              108
  N1              3               36
  N2              2               15
  N3              1                4
                  vv
clus                M0  M1  MX
  NOTCH1 MUTATED    13   0   0
  NOTCH1 WILD-TYPE 151   3   6
D17V6, multiclass
    clus
vv   NOTCH1 MUTATED NOTCH1 WILD-TYPE
  M0             13              151
  M1              0                3
  MX              0                6
D17V7, binary
                  cls
clus                 0   1
  NOTCH1 MUTATED     5   9
  NOTCH1 WILD-TYPE  41 122
[1] "tbl2"
                  cls
clus               [,1] [,2]
  NOTCH1 MUTATED      5    9
  NOTCH1 WILD-TYPE   41  122
        clus
vv       NOTCH1 MUTATED NOTCH1 WILD-TYPE
  FEMALE              5               41
  MALE                9              122
D17V8, continuous
                  vv
clus               LUNG BASALOID SQUAMOUS CELL CARCINOMA
  NOTCH1 MUTATED                                       0
  NOTCH1 WILD-TYPE                                     5
                  vv
clus               LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  NOTCH1 MUTATED                                        0
  NOTCH1 WILD-TYPE                                      1
                  vv
clus               LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  NOTCH1 MUTATED                                                            14
  NOTCH1 WILD-TYPE                                                         157
D17V9, multiclass
                                                             clus
vv                                                            NOTCH1 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    0
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             14
                                                             clus
vv                                                            NOTCH1 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      5
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              157
D17V10, binary
                  cls
clus                 0   1
  NOTCH1 MUTATED     0  14
  NOTCH1 WILD-TYPE   4 159
[1] "tbl2"
                  cls
clus               [,1] [,2]
  NOTCH1 MUTATED      0   14
  NOTCH1 WILD-TYPE    4  159
     clus
vv    NOTCH1 MUTATED NOTCH1 WILD-TYPE
  NO               0                4
  YES             14              159
D17V11, continuous
D17V12, continuous
                  vv
clus                R0  R1  R2  RX
  NOTCH1 MUTATED    14   0   0   0
  NOTCH1 WILD-TYPE 132   2   4  10
D17V13, multiclass
    clus
vv   NOTCH1 MUTATED NOTCH1 WILD-TYPE
  R0             14              132
  R1              0                2
  R2              0                4
  RX              0               10
> q(save="no")
