
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> source("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/13/Correlate_Genomic_Events.R")
> result <- main("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/13/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-tTRUE", "-iD=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/LUSC-TP/6162892/transformed.cor.cli.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/LUSC-TP/6162647/LUSC-TP.transferedmergedcluster.txt", "-fF=", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=0.05", "-cQ=0.25", "-MF=ONLYSIG", "-oT=LUSC-TP", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "terrence_modification_tag"
[1] TRUE
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"         "-oT=LUSC-TP"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/LUSC-TP/6162647/LUSC-TP.transferedmergedcluster.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/LUSC-TP/6162892/transformed.cor.cli.txt"

nPatients in clinical file=493, in cluster file=490, common to both=490
[1]  80 490
[1] "1P GAIN MUTATION ANALYSIS"
[1] 3
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
               88               402 
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
               88               402 
[1] "1Q GAIN MUTATION ANALYSIS"
[1] 3
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
              199               291 
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
              199               291 
[1] "2P GAIN MUTATION ANALYSIS"
[1] 3
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
              218               272 
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
              218               272 
[1] "2Q GAIN MUTATION ANALYSIS"
[1] 3
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
              136               354 
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
              136               354 
[1] "3P GAIN MUTATION ANALYSIS"
[1] 3
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
              107               383 
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
              107               383 
[1] "3Q GAIN MUTATION ANALYSIS"
[1] 3
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
              307               183 
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
              307               183 
[1] "4P GAIN MUTATION ANALYSIS"
[1] 3
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
               30               460 
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
               30               460 
[1] "4Q GAIN MUTATION ANALYSIS"
[1] 3
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
               22               468 
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
               22               468 
[1] "5P GAIN MUTATION ANALYSIS"
[1] 3
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
              304               186 
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
              304               186 
[1] "5Q GAIN MUTATION ANALYSIS"
[1] 3
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
               93               397 
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
               93               397 
[1] "6P GAIN MUTATION ANALYSIS"
[1] 3
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
              106               384 
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
              106               384 
[1] "6Q GAIN MUTATION ANALYSIS"
[1] 3
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
               91               399 
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
               91               399 
[1] "7P GAIN MUTATION ANALYSIS"
[1] 3
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
              234               256 
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
              234               256 
[1] "7Q GAIN MUTATION ANALYSIS"
[1] 3
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
              214               276 
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
              214               276 
[1] "8P GAIN MUTATION ANALYSIS"
[1] 3
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
              123               367 
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
              123               367 
[1] "8Q GAIN MUTATION ANALYSIS"
[1] 3
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
              247               243 
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
              247               243 
[1] "9P GAIN MUTATION ANALYSIS"
[1] 3
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
               60               430 
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
               60               430 
[1] "9Q GAIN MUTATION ANALYSIS"
[1] 3
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
               91               399 
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
               91               399 
[1] "10P GAIN MUTATION ANALYSIS"
[1] 3
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
                76                414 
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
                76                414 
[1] "10Q GAIN MUTATION ANALYSIS"
[1] 3
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                43                447 
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                43                447 
[1] "11P GAIN MUTATION ANALYSIS"
[1] 3
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                72                418 
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                72                418 
[1] "11Q GAIN MUTATION ANALYSIS"
[1] 3
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                89                401 
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                89                401 
[1] "12P GAIN MUTATION ANALYSIS"
[1] 3
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
               224                266 
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
               224                266 
[1] "12Q GAIN MUTATION ANALYSIS"
[1] 3
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
               151                339 
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
               151                339 
[1] "13Q GAIN MUTATION ANALYSIS"
[1] 3
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                39                451 
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                39                451 
[1] "14Q GAIN MUTATION ANALYSIS"
[1] 3
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
               124                366 
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
               124                366 
[1] "15Q GAIN MUTATION ANALYSIS"
[1] 3
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
               104                386 
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
               104                386 
[1] "16P GAIN MUTATION ANALYSIS"
[1] 3
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
                86                404 
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
                86                404 
[1] "16Q GAIN MUTATION ANALYSIS"
[1] 3
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                85                405 
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                85                405 
[1] "17P GAIN MUTATION ANALYSIS"
[1] 3
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
                65                425 
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
                65                425 
[1] "17Q GAIN MUTATION ANALYSIS"
[1] 3
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
               156                334 
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
               156                334 
[1] "18P GAIN MUTATION ANALYSIS"
[1] 3
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
               147                343 
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
               147                343 
[1] "18Q GAIN MUTATION ANALYSIS"
[1] 3
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
               105                385 
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
               105                385 
[1] "19P GAIN MUTATION ANALYSIS"
[1] 3
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
               109                381 
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
               109                381 
[1] "19Q GAIN MUTATION ANALYSIS"
[1] 3
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
               155                335 
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
               155                335 
[1] "20P GAIN MUTATION ANALYSIS"
[1] 3
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
               254                236 
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
               254                236 
[1] "20Q GAIN MUTATION ANALYSIS"
[1] 3
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
               243                247 
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
               243                247 
[1] "21Q GAIN MUTATION ANALYSIS"
[1] 3
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                56                434 
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                56                434 
[1] "22Q GAIN MUTATION ANALYSIS"
[1] 3
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
               218                272 
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
               218                272 
[1] "XQ GAIN MUTATION ANALYSIS"
[1] 3
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
               77               413 
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
               77               413 
[1] "1P LOSS MUTATION ANALYSIS"
[1] 3
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
              147               343 
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
              147               343 
[1] "1Q LOSS MUTATION ANALYSIS"
[1] 3
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
               57               433 
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
               57               433 
[1] "2P LOSS MUTATION ANALYSIS"
[1] 3
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
               21               469 
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
               21               469 
[1] "2Q LOSS MUTATION ANALYSIS"
[1] 3
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
               41               449 
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
               41               449 
[1] "3P LOSS MUTATION ANALYSIS"
[1] 3
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
              303               187 
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
              303               187 
[1] "3Q LOSS MUTATION ANALYSIS"
[1] 3
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
               71               419 
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
               71               419 
[1] "4P LOSS MUTATION ANALYSIS"
[1] 3
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
              307               183 
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
              307               183 
[1] "4Q LOSS MUTATION ANALYSIS"
[1] 3
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
              290               200 
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
              290               200 
[1] "5P LOSS MUTATION ANALYSIS"
[1] 3
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
               76               414 
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
               76               414 
[1] "5Q LOSS MUTATION ANALYSIS"
[1] 3
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
              284               206 
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
              284               206 
[1] "6P LOSS MUTATION ANALYSIS"
[1] 3
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
              109               381 
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
              109               381 
[1] "6Q LOSS MUTATION ANALYSIS"
[1] 3
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
              109               381 
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
              109               381 
[1] "7P LOSS MUTATION ANALYSIS"
[1] 3
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
               58               432 
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
               58               432 
[1] "7Q LOSS MUTATION ANALYSIS"
[1] 3
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
               51               439 
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
               51               439 
[1] "8P LOSS MUTATION ANALYSIS"
[1] 3
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
              237               253 
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
              237               253 
[1] "8Q LOSS MUTATION ANALYSIS"
[1] 3
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
               49               441 
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
               49               441 
[1] "9P LOSS MUTATION ANALYSIS"
[1] 3
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
              304               186 
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
              304               186 
[1] "9Q LOSS MUTATION ANALYSIS"
[1] 3
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
              239               251 
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
              239               251 
[1] "10P LOSS MUTATION ANALYSIS"
[1] 3
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
               210                280 
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
               210                280 
[1] "10Q LOSS MUTATION ANALYSIS"
[1] 3
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
               223                267 
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
               223                267 
[1] "11P LOSS MUTATION ANALYSIS"
[1] 3
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
               168                322 
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
               168                322 
[1] "11Q LOSS MUTATION ANALYSIS"
[1] 3
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
               139                351 
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
               139                351 
[1] "12P LOSS MUTATION ANALYSIS"
[1] 3
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
                38                452 
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
                38                452 
[1] "12Q LOSS MUTATION ANALYSIS"
[1] 3
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                48                442 
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                48                442 
[1] "13Q LOSS MUTATION ANALYSIS"
[1] 3
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
               305                185 
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
               305                185 
[1] "14Q LOSS MUTATION ANALYSIS"
[1] 3
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
               165                325 
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
               165                325 
[1] "15Q LOSS MUTATION ANALYSIS"
[1] 3
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
               137                353 
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
               137                353 
[1] "16P LOSS MUTATION ANALYSIS"
[1] 3
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
               155                335 
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
               155                335 
[1] "16Q LOSS MUTATION ANALYSIS"
[1] 3
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
               177                313 
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
               177                313 
[1] "17P LOSS MUTATION ANALYSIS"
[1] 3
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
               285                205 
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
               285                205 
[1] "17Q LOSS MUTATION ANALYSIS"
[1] 3
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
                90                400 
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
                90                400 
[1] "18P LOSS MUTATION ANALYSIS"
[1] 3
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
               139                351 
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
               139                351 
[1] "18Q LOSS MUTATION ANALYSIS"
[1] 3
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
               182                308 
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
               182                308 
[1] "19P LOSS MUTATION ANALYSIS"
[1] 3
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
               164                326 
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
               164                326 
[1] "19Q LOSS MUTATION ANALYSIS"
[1] 3
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
               110                380 
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
               110                380 
[1] "20P LOSS MUTATION ANALYSIS"
[1] 3
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                41                449 
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                41                449 
[1] "20Q LOSS MUTATION ANALYSIS"
[1] 3
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                46                444 
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                46                444 
[1] "21Q LOSS MUTATION ANALYSIS"
[1] 3
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
               260                230 
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
               260                230 
[1] "22Q LOSS MUTATION ANALYSIS"
[1] 3
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
                95                395 
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
                95                395 
[1] "XQ LOSS MUTATION ANALYSIS"
[1] 3
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
              110               380 
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
              110               380 
[1] "terrence_modification_tag"
[1] TRUE
[1] "data2feature, selection="
 [1] "MRNA_CNMF"                   "MRNA_CHIERARCHICAL"         
 [3] "CN_CNMF"                     "METHLYATION_CNMF"           
 [5] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [7] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [9] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[11] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 12 rows and 490 columns.

Variable 1:'MRNA_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'MRNA_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'CN_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'METHLYATION_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'RPPA_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'RPPA_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MRNASEQ_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'MIRSEQ_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 11:'MIRSEQ_MATURE_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "rownames(nsurv.mat)"
 [1] "MRNA_CNMF"                   "MRNA_CHIERARCHICAL"         
 [3] "CN_CNMF"                     "METHLYATION_CNMF"           
 [5] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [7] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [9] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[11] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 490 columns, 0 survival variables, and 12 non-survival variables.
MRNA_CNMF, nv=4, binary=FALSE, numeric=FALSE
MRNA_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE
CN_CNMF, nv=3, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=3, binary=FALSE, numeric=FALSE
RPPA_CNMF, nv=3, binary=FALSE, numeric=FALSE
RPPA_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=4, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=4, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=2, binary=FALSE, numeric=FALSE

Clustering(1) Variable = 1P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1P GAIN MUTATED       13      8      5     10
  1P GAIN WILD-TYPE     29     44     27     18
D1V1, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1              13                29
  CLUS_2               8                44
  CLUS_3               5                27
  CLUS_4              10                18
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1P GAIN MUTATED        6      8      9     13
  1P GAIN WILD-TYPE     16     48     14     40
D1V2, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1               6                16
  CLUS_2               8                48
  CLUS_3               9                14
  CLUS_4              13                40
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P GAIN MUTATED       32     26     30
  1P GAIN WILD-TYPE    161    136    105
D1V3, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1              32               161
  CLUS_2              26               136
  CLUS_3              30               105
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P GAIN MUTATED       19     22     16
  1P GAIN WILD-TYPE    123     92     84
D1V4, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1              19               123
  CLUS_2              22                92
  CLUS_3              16                84
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P GAIN MUTATED       14     14      9
  1P GAIN WILD-TYPE     46     59     52
D1V5, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1              14                46
  CLUS_2              14                59
  CLUS_3               9                52
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1P GAIN MUTATED       14      8     11      4
  1P GAIN WILD-TYPE     44     39     38     36
D1V6, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1              14                44
  CLUS_2               8                39
  CLUS_3              11                38
  CLUS_4               4                36
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1P GAIN MUTATED       22     22     29     14
  1P GAIN WILD-TYPE     96    121    114     61
D1V7, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1              22                96
  CLUS_2              22               121
  CLUS_3              29               114
  CLUS_4              14                61
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P GAIN MUTATED       26     22     39
  1P GAIN WILD-TYPE     67    118    207
D1V8, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1              26                67
  CLUS_2              22               118
  CLUS_3              39               207
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1P GAIN MUTATED       29     21     20     12
  1P GAIN WILD-TYPE    116    109    105     52
D1V9, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1              29               116
  CLUS_2              21               109
  CLUS_3              20               105
  CLUS_4              12                52
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P GAIN MUTATED       13     24     45
  1P GAIN WILD-TYPE     58    139    185
D1V10, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1              13                58
  CLUS_2              24               139
  CLUS_3              45               185
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P GAIN MUTATED       20     18     14
  1P GAIN WILD-TYPE    105     94     77
D1V11, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1              20               105
  CLUS_2              18                94
  CLUS_3              14                77
D1V12, binary
                   cls
clus                  0   1
  1P GAIN MUTATED    29  23
  1P GAIN WILD-TYPE 149 127
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1P GAIN MUTATED     29   23
  1P GAIN WILD-TYPE  149  127
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1              29               149
  CLUS_2              23               127

Clustering(2) Variable = 1Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1Q GAIN MUTATED       19     28     13     13
  1Q GAIN WILD-TYPE     23     24     19     15
D2V1, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1              19                23
  CLUS_2              28                24
  CLUS_3              13                19
  CLUS_4              13                15
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1Q GAIN MUTATED       10     29     12     22
  1Q GAIN WILD-TYPE     12     27     11     31
D2V2, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1              10                12
  CLUS_2              29                27
  CLUS_3              12                11
  CLUS_4              22                31
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q GAIN MUTATED       68     87     44
  1Q GAIN WILD-TYPE    125     75     91
D2V3, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1              68               125
  CLUS_2              87                75
  CLUS_3              44                91
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q GAIN MUTATED       39     62     36
  1Q GAIN WILD-TYPE    103     52     64
D2V4, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1              39               103
  CLUS_2              62                52
  CLUS_3              36                64
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q GAIN MUTATED       26     30     21
  1Q GAIN WILD-TYPE     34     43     40
D2V5, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1              26                34
  CLUS_2              30                43
  CLUS_3              21                40
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1Q GAIN MUTATED       26     18     22     11
  1Q GAIN WILD-TYPE     32     29     27     29
D2V6, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1              26                32
  CLUS_2              18                29
  CLUS_3              22                27
  CLUS_4              11                29
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1Q GAIN MUTATED       38     75     56     27
  1Q GAIN WILD-TYPE     80     68     87     48
D2V7, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1              38                80
  CLUS_2              75                68
  CLUS_3              56                87
  CLUS_4              27                48
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q GAIN MUTATED       42     75     79
  1Q GAIN WILD-TYPE     51     65    167
D2V8, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1              42                51
  CLUS_2              75                65
  CLUS_3              79               167
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1Q GAIN MUTATED       62     51     38     34
  1Q GAIN WILD-TYPE     83     79     87     30
D2V9, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1              62                83
  CLUS_2              51                79
  CLUS_3              38                87
  CLUS_4              34                30
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q GAIN MUTATED       41     52     92
  1Q GAIN WILD-TYPE     30    111    138
D2V10, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1              41                30
  CLUS_2              52               111
  CLUS_3              92               138
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q GAIN MUTATED       57     35     32
  1Q GAIN WILD-TYPE     68     77     59
D2V11, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1              57                68
  CLUS_2              35                77
  CLUS_3              32                59
D2V12, binary
                   cls
clus                  0   1
  1Q GAIN MUTATED    62  62
  1Q GAIN WILD-TYPE 116  88
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1Q GAIN MUTATED     62   62
  1Q GAIN WILD-TYPE  116   88
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1              62               116
  CLUS_2              62                88

Clustering(3) Variable = 2P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2P GAIN MUTATED       14     29     10     11
  2P GAIN WILD-TYPE     28     23     22     17
D3V1, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1              14                28
  CLUS_2              29                23
  CLUS_3              10                22
  CLUS_4              11                17
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2P GAIN MUTATED        6     31     10     17
  2P GAIN WILD-TYPE     16     25     13     36
D3V2, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1               6                16
  CLUS_2              31                25
  CLUS_3              10                13
  CLUS_4              17                36
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P GAIN MUTATED       56    107     55
  2P GAIN WILD-TYPE    137     55     80
D3V3, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1              56               137
  CLUS_2             107                55
  CLUS_3              55                80
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P GAIN MUTATED       49     74     42
  2P GAIN WILD-TYPE     93     40     58
D3V4, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1              49                93
  CLUS_2              74                40
  CLUS_3              42                58
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P GAIN MUTATED       29     30     32
  2P GAIN WILD-TYPE     31     43     29
D3V5, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1              29                31
  CLUS_2              30                43
  CLUS_3              32                29
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2P GAIN MUTATED       28     26     21     16
  2P GAIN WILD-TYPE     30     21     28     24
D3V6, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1              28                30
  CLUS_2              26                21
  CLUS_3              21                28
  CLUS_4              16                24
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2P GAIN MUTATED       39     88     63     22
  2P GAIN WILD-TYPE     79     55     80     53
D3V7, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1              39                79
  CLUS_2              88                55
  CLUS_3              63                80
  CLUS_4              22                53
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P GAIN MUTATED       39     84     89
  2P GAIN WILD-TYPE     54     56    157
D3V8, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1              39                54
  CLUS_2              84                56
  CLUS_3              89               157
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2P GAIN MUTATED       62     74     41     32
  2P GAIN WILD-TYPE     83     56     84     32
D3V9, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1              62                83
  CLUS_2              74                56
  CLUS_3              41                84
  CLUS_4              32                32
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P GAIN MUTATED       39     85     85
  2P GAIN WILD-TYPE     32     78    145
D3V10, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1              39                32
  CLUS_2              85                78
  CLUS_3              85               145
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P GAIN MUTATED       74     43     33
  2P GAIN WILD-TYPE     51     69     58
D3V11, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1              74                51
  CLUS_2              43                69
  CLUS_3              33                58
D3V12, binary
                   cls
clus                  0   1
  2P GAIN MUTATED    67  83
  2P GAIN WILD-TYPE 111  67
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2P GAIN MUTATED     67   83
  2P GAIN WILD-TYPE  111   67
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1              67               111
  CLUS_2              83                67

Clustering(4) Variable = 2Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2Q GAIN MUTATED        8     18      7      8
  2Q GAIN WILD-TYPE     34     34     25     20
D4V1, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1               8                34
  CLUS_2              18                34
  CLUS_3               7                25
  CLUS_4               8                20
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2Q GAIN MUTATED        6     19      6     10
  2Q GAIN WILD-TYPE     16     37     17     43
D4V2, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1               6                16
  CLUS_2              19                37
  CLUS_3               6                17
  CLUS_4              10                43
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2Q GAIN MUTATED       37     65     34
  2Q GAIN WILD-TYPE    156     97    101
D4V3, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1              37               156
  CLUS_2              65                97
  CLUS_3              34               101
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2Q GAIN MUTATED       35     44     25
  2Q GAIN WILD-TYPE    107     70     75
D4V4, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1              35               107
  CLUS_2              44                70
  CLUS_3              25                75
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2Q GAIN MUTATED       19     19     22
  2Q GAIN WILD-TYPE     41     54     39
D4V5, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1              19                41
  CLUS_2              19                54
  CLUS_3              22                39
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2Q GAIN MUTATED       19     18     12     11
  2Q GAIN WILD-TYPE     39     29     37     29
D4V6, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1              19                39
  CLUS_2              18                29
  CLUS_3              12                37
  CLUS_4              11                29
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2Q GAIN MUTATED       26     52     42     11
  2Q GAIN WILD-TYPE     92     91    101     64
D4V7, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1              26                92
  CLUS_2              52                91
  CLUS_3              42               101
  CLUS_4              11                64
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2Q GAIN MUTATED       30     49     52
  2Q GAIN WILD-TYPE     63     91    194
D4V8, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1              30                63
  CLUS_2              49                91
  CLUS_3              52               194
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2Q GAIN MUTATED       38     46     27     18
  2Q GAIN WILD-TYPE    107     84     98     46
D4V9, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1              38               107
  CLUS_2              46                84
  CLUS_3              27                98
  CLUS_4              18                46
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2Q GAIN MUTATED       20     55     54
  2Q GAIN WILD-TYPE     51    108    176
D4V10, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1              20                51
  CLUS_2              55               108
  CLUS_3              54               176
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2Q GAIN MUTATED       48     23     21
  2Q GAIN WILD-TYPE     77     89     70
D4V11, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1              48                77
  CLUS_2              23                89
  CLUS_3              21                70
D4V12, binary
                   cls
clus                  0   1
  2Q GAIN MUTATED    43  49
  2Q GAIN WILD-TYPE 135 101
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2Q GAIN MUTATED     43   49
  2Q GAIN WILD-TYPE  135  101
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1              43               135
  CLUS_2              49               101

Clustering(5) Variable = 3P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3P GAIN MUTATED        9     12      7      5
  3P GAIN WILD-TYPE     33     40     25     23
D5V1, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1               9                33
  CLUS_2              12                40
  CLUS_3               7                25
  CLUS_4               5                23
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3P GAIN MUTATED        2     12      4     15
  3P GAIN WILD-TYPE     20     44     19     38
D5V2, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1               2                20
  CLUS_2              12                44
  CLUS_3               4                19
  CLUS_4              15                38
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P GAIN MUTATED       34     42     31
  3P GAIN WILD-TYPE    159    120    104
D5V3, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1              34               159
  CLUS_2              42               120
  CLUS_3              31               104
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P GAIN MUTATED       31     35     16
  3P GAIN WILD-TYPE    111     79     84
D5V4, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1              31               111
  CLUS_2              35                79
  CLUS_3              16                84
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P GAIN MUTATED       12     17     15
  3P GAIN WILD-TYPE     48     56     46
D5V5, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1              12                48
  CLUS_2              17                56
  CLUS_3              15                46
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3P GAIN MUTATED        9     15     12      8
  3P GAIN WILD-TYPE     49     32     37     32
D5V6, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1               9                49
  CLUS_2              15                32
  CLUS_3              12                37
  CLUS_4               8                32
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3P GAIN MUTATED       26     39     26     12
  3P GAIN WILD-TYPE     92    104    117     63
D5V7, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1              26                92
  CLUS_2              39               104
  CLUS_3              26               117
  CLUS_4              12                63
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P GAIN MUTATED       16     38     49
  3P GAIN WILD-TYPE     77    102    197
D5V8, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1              16                77
  CLUS_2              38               102
  CLUS_3              49               197
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3P GAIN MUTATED       28     30     27     16
  3P GAIN WILD-TYPE    117    100     98     48
D5V9, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1              28               117
  CLUS_2              30               100
  CLUS_3              27                98
  CLUS_4              16                48
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P GAIN MUTATED       16     39     46
  3P GAIN WILD-TYPE     55    124    184
D5V10, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1              16                55
  CLUS_2              39               124
  CLUS_3              46               184
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P GAIN MUTATED       28     28     18
  3P GAIN WILD-TYPE     97     84     73
D5V11, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1              28                97
  CLUS_2              28                84
  CLUS_3              18                73
D5V12, binary
                   cls
clus                  0   1
  3P GAIN MUTATED    42  32
  3P GAIN WILD-TYPE 136 118
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3P GAIN MUTATED     42   32
  3P GAIN WILD-TYPE  136  118
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1              42               136
  CLUS_2              32               118

Clustering(6) Variable = 3Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3Q GAIN MUTATED       30     34     18     19
  3Q GAIN WILD-TYPE     12     18     14      9
D6V1, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1              30                12
  CLUS_2              34                18
  CLUS_3              18                14
  CLUS_4              19                 9
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3Q GAIN MUTATED       11     36     16     38
  3Q GAIN WILD-TYPE     11     20      7     15
D6V2, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1              11                11
  CLUS_2              36                20
  CLUS_3              16                 7
  CLUS_4              38                15
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q GAIN MUTATED      107    100    100
  3Q GAIN WILD-TYPE     86     62     35
D6V3, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1             107                86
  CLUS_2             100                62
  CLUS_3             100                35
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q GAIN MUTATED       82     75     66
  3Q GAIN WILD-TYPE     60     39     34
D6V4, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1              82                60
  CLUS_2              75                39
  CLUS_3              66                34
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q GAIN MUTATED       37     45     38
  3Q GAIN WILD-TYPE     23     28     23
D6V5, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1              37                23
  CLUS_2              45                28
  CLUS_3              38                23
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3Q GAIN MUTATED       35     33     32     20
  3Q GAIN WILD-TYPE     23     14     17     20
D6V6, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1              35                23
  CLUS_2              33                14
  CLUS_3              32                17
  CLUS_4              20                20
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3Q GAIN MUTATED       80     88     92     40
  3Q GAIN WILD-TYPE     38     55     51     35
D6V7, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1              80                38
  CLUS_2              88                55
  CLUS_3              92                51
  CLUS_4              40                35
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q GAIN MUTATED       69     86    145
  3Q GAIN WILD-TYPE     24     54    101
D6V8, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1              69                24
  CLUS_2              86                54
  CLUS_3             145               101
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3Q GAIN MUTATED       93     88     67     42
  3Q GAIN WILD-TYPE     52     42     58     22
D6V9, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1              93                52
  CLUS_2              88                42
  CLUS_3              67                58
  CLUS_4              42                22
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q GAIN MUTATED       43    112    135
  3Q GAIN WILD-TYPE     28     51     95
D6V10, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1              43                28
  CLUS_2             112                51
  CLUS_3             135                95
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q GAIN MUTATED       76     70     56
  3Q GAIN WILD-TYPE     49     42     35
D6V11, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1              76                49
  CLUS_2              70                42
  CLUS_3              56                35
D6V12, binary
                   cls
clus                  0   1
  3Q GAIN MUTATED   115  87
  3Q GAIN WILD-TYPE  63  63
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3Q GAIN MUTATED    115   87
  3Q GAIN WILD-TYPE   63   63
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1             115                63
  CLUS_2              87                63

Clustering(7) Variable = 4P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4P GAIN MUTATED        4      2      4      4
  4P GAIN WILD-TYPE     38     50     28     24
D7V1, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1               4                38
  CLUS_2               2                50
  CLUS_3               4                28
  CLUS_4               4                24
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4P GAIN MUTATED        3      2      3      6
  4P GAIN WILD-TYPE     19     54     20     47
D7V2, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1               3                19
  CLUS_2               2                54
  CLUS_3               3                20
  CLUS_4               6                47
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P GAIN MUTATED        9      2     19
  4P GAIN WILD-TYPE    184    160    116
D7V3, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1               9               184
  CLUS_2               2               160
  CLUS_3              19               116
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P GAIN MUTATED        8      2      7
  4P GAIN WILD-TYPE    134    112     93
D7V4, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1               8               134
  CLUS_2               2               112
  CLUS_3               7                93
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P GAIN MUTATED        3      1      4
  4P GAIN WILD-TYPE     57     72     57
D7V5, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1               3                57
  CLUS_2               1                72
  CLUS_3               4                57
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4P GAIN MUTATED        4      1      0      3
  4P GAIN WILD-TYPE     54     46     49     37
D7V6, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1               4                54
  CLUS_2               1                46
  CLUS_3               0                49
  CLUS_4               3                37
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4P GAIN MUTATED        5      3     15      5
  4P GAIN WILD-TYPE    113    140    128     70
D7V7, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1               5               113
  CLUS_2               3               140
  CLUS_3              15               128
  CLUS_4               5                70
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P GAIN MUTATED       10      3     15
  4P GAIN WILD-TYPE     83    137    231
D7V8, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1              10                83
  CLUS_2               3               137
  CLUS_3              15               231
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4P GAIN MUTATED        8      7     11      1
  4P GAIN WILD-TYPE    137    123    114     63
D7V9, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1               8               137
  CLUS_2               7               123
  CLUS_3              11               114
  CLUS_4               1                63
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P GAIN MUTATED        1     11     15
  4P GAIN WILD-TYPE     70    152    215
D7V10, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1               1                70
  CLUS_2              11               152
  CLUS_3              15               215
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P GAIN MUTATED        3      8      5
  4P GAIN WILD-TYPE    122    104     86
D7V11, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1               3               122
  CLUS_2               8               104
  CLUS_3               5                86
D7V12, binary
                   cls
clus                  0   1
  4P GAIN MUTATED    13   3
  4P GAIN WILD-TYPE 165 147
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4P GAIN MUTATED     13    3
  4P GAIN WILD-TYPE  165  147
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1              13               165
  CLUS_2               3               147

Clustering(8) Variable = 4Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4Q GAIN MUTATED        4      2      3      1
  4Q GAIN WILD-TYPE     38     50     29     27
D8V1, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1               4                38
  CLUS_2               2                50
  CLUS_3               3                29
  CLUS_4               1                27
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4Q GAIN MUTATED        1      2      2      5
  4Q GAIN WILD-TYPE     21     54     21     48
D8V2, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1               1                21
  CLUS_2               2                54
  CLUS_3               2                21
  CLUS_4               5                48
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q GAIN MUTATED        4      5     13
  4Q GAIN WILD-TYPE    189    157    122
D8V3, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1               4               189
  CLUS_2               5               157
  CLUS_3              13               122
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q GAIN MUTATED        2      6      6
  4Q GAIN WILD-TYPE    140    108     94
D8V4, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1               2               140
  CLUS_2               6               108
  CLUS_3               6                94
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q GAIN MUTATED        1      2      3
  4Q GAIN WILD-TYPE     59     71     58
D8V5, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1               1                59
  CLUS_2               2                71
  CLUS_3               3                58
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4Q GAIN MUTATED        0      2      1      3
  4Q GAIN WILD-TYPE     58     45     48     37
D8V6, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1               0                58
  CLUS_2               2                45
  CLUS_3               1                48
  CLUS_4               3                37
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4Q GAIN MUTATED        5      5      8      2
  4Q GAIN WILD-TYPE    113    138    135     73
D8V7, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1               5               113
  CLUS_2               5               138
  CLUS_3               8               135
  CLUS_4               2                73
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q GAIN MUTATED        5      6      9
  4Q GAIN WILD-TYPE     88    134    237
D8V8, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1               5                88
  CLUS_2               6               134
  CLUS_3               9               237
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4Q GAIN MUTATED        7      6      6      1
  4Q GAIN WILD-TYPE    138    124    119     63
D8V9, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1               7               138
  CLUS_2               6               124
  CLUS_3               6               119
  CLUS_4               1                63
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q GAIN MUTATED        1      8     11
  4Q GAIN WILD-TYPE     70    155    219
D8V10, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1               1                70
  CLUS_2               8               155
  CLUS_3              11               219
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q GAIN MUTATED        3      6      2
  4Q GAIN WILD-TYPE    122    106     89
D8V11, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1               3               122
  CLUS_2               6               106
  CLUS_3               2                89
D8V12, binary
                   cls
clus                  0   1
  4Q GAIN MUTATED     5   6
  4Q GAIN WILD-TYPE 173 144
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4Q GAIN MUTATED      5    6
  4Q GAIN WILD-TYPE  173  144
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1               5               173
  CLUS_2               6               144

Clustering(9) Variable = 5P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5P GAIN MUTATED       25     34     22     16
  5P GAIN WILD-TYPE     17     18     10     12
D9V1, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1              25                17
  CLUS_2              34                18
  CLUS_3              22                10
  CLUS_4              16                12
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5P GAIN MUTATED       13     36     16     32
  5P GAIN WILD-TYPE      9     20      7     21
D9V2, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1              13                 9
  CLUS_2              36                20
  CLUS_3              16                 7
  CLUS_4              32                21
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P GAIN MUTATED      106     97    101
  5P GAIN WILD-TYPE     87     65     34
D9V3, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1             106                87
  CLUS_2              97                65
  CLUS_3             101                34
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P GAIN MUTATED       90     69     65
  5P GAIN WILD-TYPE     52     45     35
D9V4, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1              90                52
  CLUS_2              69                45
  CLUS_3              65                35
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P GAIN MUTATED       33     48     40
  5P GAIN WILD-TYPE     27     25     21
D9V5, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1              33                27
  CLUS_2              48                25
  CLUS_3              40                21
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5P GAIN MUTATED       37     27     34     23
  5P GAIN WILD-TYPE     21     20     15     17
D9V6, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1              37                21
  CLUS_2              27                20
  CLUS_3              34                15
  CLUS_4              23                17
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5P GAIN MUTATED       72     85     97     43
  5P GAIN WILD-TYPE     46     58     46     32
D9V7, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1              72                46
  CLUS_2              85                58
  CLUS_3              97                46
  CLUS_4              43                32
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P GAIN MUTATED       59     83    155
  5P GAIN WILD-TYPE     34     57     91
D9V8, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1              59                34
  CLUS_2              83                57
  CLUS_3             155                91
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5P GAIN MUTATED       92     79     80     39
  5P GAIN WILD-TYPE     53     51     45     25
D9V9, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1              92                53
  CLUS_2              79                51
  CLUS_3              80                45
  CLUS_4              39                25
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P GAIN MUTATED       44    113    133
  5P GAIN WILD-TYPE     27     50     97
D9V10, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1              44                27
  CLUS_2             113                50
  CLUS_3             133                97
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P GAIN MUTATED       78     74     51
  5P GAIN WILD-TYPE     47     38     40
D9V11, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1              78                47
  CLUS_2              74                38
  CLUS_3              51                40
D9V12, binary
                   cls
clus                  0   1
  5P GAIN MUTATED   117  86
  5P GAIN WILD-TYPE  61  64
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5P GAIN MUTATED    117   86
  5P GAIN WILD-TYPE   61   64
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1             117                61
  CLUS_2              86                64

Clustering(10) Variable = 5Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5Q GAIN MUTATED       10      6      8      2
  5Q GAIN WILD-TYPE     32     46     24     26
D10V1, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1              10                32
  CLUS_2               6                46
  CLUS_3               8                24
  CLUS_4               2                26
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5Q GAIN MUTATED        2      6      6     12
  5Q GAIN WILD-TYPE     20     50     17     41
D10V2, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1               2                20
  CLUS_2               6                50
  CLUS_3               6                17
  CLUS_4              12                41
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q GAIN MUTATED       31     26     36
  5Q GAIN WILD-TYPE    162    136     99
D10V3, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1              31               162
  CLUS_2              26               136
  CLUS_3              36                99
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q GAIN MUTATED       28     18     26
  5Q GAIN WILD-TYPE    114     96     74
D10V4, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1              28               114
  CLUS_2              18                96
  CLUS_3              26                74
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q GAIN MUTATED        9     17     11
  5Q GAIN WILD-TYPE     51     56     50
D10V5, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1               9                51
  CLUS_2              17                56
  CLUS_3              11                50
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5Q GAIN MUTATED       13      4     13      7
  5Q GAIN WILD-TYPE     45     43     36     33
D10V6, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1              13                45
  CLUS_2               4                43
  CLUS_3              13                36
  CLUS_4               7                33
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5Q GAIN MUTATED       24     21     35     12
  5Q GAIN WILD-TYPE     94    122    108     63
D10V7, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1              24                94
  CLUS_2              21               122
  CLUS_3              35               108
  CLUS_4              12                63
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q GAIN MUTATED       19     20     53
  5Q GAIN WILD-TYPE     74    120    193
D10V8, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1              19                74
  CLUS_2              20               120
  CLUS_3              53               193
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5Q GAIN MUTATED       27     28     30      5
  5Q GAIN WILD-TYPE    118    102     95     59
D10V9, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1              27               118
  CLUS_2              28               102
  CLUS_3              30                95
  CLUS_4               5                59
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q GAIN MUTATED        8     37     45
  5Q GAIN WILD-TYPE     63    126    185
D10V10, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1               8                63
  CLUS_2              37               126
  CLUS_3              45               185
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q GAIN MUTATED       28     25     12
  5Q GAIN WILD-TYPE     97     87     79
D10V11, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1              28                97
  CLUS_2              25                87
  CLUS_3              12                79
D10V12, binary
                   cls
clus                  0   1
  5Q GAIN MUTATED    37  28
  5Q GAIN WILD-TYPE 141 122
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5Q GAIN MUTATED     37   28
  5Q GAIN WILD-TYPE  141  122
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1              37               141
  CLUS_2              28               122

Clustering(11) Variable = 6P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6P GAIN MUTATED       10      8      6     12
  6P GAIN WILD-TYPE     32     44     26     16
D11V1, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1              10                32
  CLUS_2               8                44
  CLUS_3               6                26
  CLUS_4              12                16
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6P GAIN MUTATED        8      9      6     13
  6P GAIN WILD-TYPE     14     47     17     40
D11V2, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1               8                14
  CLUS_2               9                47
  CLUS_3               6                17
  CLUS_4              13                40
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P GAIN MUTATED       31     31     44
  6P GAIN WILD-TYPE    162    131     91
D11V3, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1              31               162
  CLUS_2              31               131
  CLUS_3              44                91
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P GAIN MUTATED       30     22     21
  6P GAIN WILD-TYPE    112     92     79
D11V4, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1              30               112
  CLUS_2              22                92
  CLUS_3              21                79
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P GAIN MUTATED       15     17     16
  6P GAIN WILD-TYPE     45     56     45
D11V5, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1              15                45
  CLUS_2              17                56
  CLUS_3              16                45
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6P GAIN MUTATED       13     15     14      6
  6P GAIN WILD-TYPE     45     32     35     34
D11V6, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1              13                45
  CLUS_2              15                32
  CLUS_3              14                35
  CLUS_4               6                34
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6P GAIN MUTATED       18     25     45     17
  6P GAIN WILD-TYPE    100    118     98     58
D11V7, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1              18               100
  CLUS_2              25               118
  CLUS_3              45                98
  CLUS_4              17                58
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P GAIN MUTATED       31     23     51
  6P GAIN WILD-TYPE     62    117    195
D11V8, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1              31                62
  CLUS_2              23               117
  CLUS_3              51               195
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6P GAIN MUTATED       35     25     27     12
  6P GAIN WILD-TYPE    110    105     98     52
D11V9, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1              35               110
  CLUS_2              25               105
  CLUS_3              27                98
  CLUS_4              12                52
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P GAIN MUTATED       13     40     46
  6P GAIN WILD-TYPE     58    123    184
D11V10, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1              13                58
  CLUS_2              40               123
  CLUS_3              46               184
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P GAIN MUTATED       25     23     22
  6P GAIN WILD-TYPE    100     89     69
D11V11, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1              25               100
  CLUS_2              23                89
  CLUS_3              22                69
D11V12, binary
                   cls
clus                  0   1
  6P GAIN MUTATED    37  33
  6P GAIN WILD-TYPE 141 117
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6P GAIN MUTATED     37   33
  6P GAIN WILD-TYPE  141  117
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1              37               141
  CLUS_2              33               117

Clustering(12) Variable = 6Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6Q GAIN MUTATED       10      5      5      9
  6Q GAIN WILD-TYPE     32     47     27     19
D12V1, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1              10                32
  CLUS_2               5                47
  CLUS_3               5                27
  CLUS_4               9                19
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6Q GAIN MUTATED        6      6      5     12
  6Q GAIN WILD-TYPE     16     50     18     41
D12V2, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1               6                16
  CLUS_2               6                50
  CLUS_3               5                18
  CLUS_4              12                41
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q GAIN MUTATED       25     26     40
  6Q GAIN WILD-TYPE    168    136     95
D12V3, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1              25               168
  CLUS_2              26               136
  CLUS_3              40                95
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q GAIN MUTATED       25     17     21
  6Q GAIN WILD-TYPE    117     97     79
D12V4, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1              25               117
  CLUS_2              17                97
  CLUS_3              21                79
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q GAIN MUTATED       12     15     11
  6Q GAIN WILD-TYPE     48     58     50
D12V5, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1              12                48
  CLUS_2              15                58
  CLUS_3              11                50
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6Q GAIN MUTATED       11      9     11      7
  6Q GAIN WILD-TYPE     47     38     38     33
D12V6, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1              11                47
  CLUS_2               9                38
  CLUS_3              11                38
  CLUS_4               7                33
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6Q GAIN MUTATED       19     19     39     13
  6Q GAIN WILD-TYPE     99    124    104     62
D12V7, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1              19                99
  CLUS_2              19               124
  CLUS_3              39               104
  CLUS_4              13                62
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q GAIN MUTATED       28     17     45
  6Q GAIN WILD-TYPE     65    123    201
D12V8, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1              28                65
  CLUS_2              17               123
  CLUS_3              45               201
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6Q GAIN MUTATED       32     22     23     10
  6Q GAIN WILD-TYPE    113    108    102     54
D12V9, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1              32               113
  CLUS_2              22               108
  CLUS_3              23               102
  CLUS_4              10                54
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q GAIN MUTATED       10     33     44
  6Q GAIN WILD-TYPE     61    130    186
D12V10, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1              10                61
  CLUS_2              33               130
  CLUS_3              44               186
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q GAIN MUTATED       23     21     18
  6Q GAIN WILD-TYPE    102     91     73
D12V11, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1              23               102
  CLUS_2              21                91
  CLUS_3              18                73
D12V12, binary
                   cls
clus                  0   1
  6Q GAIN MUTATED    32  30
  6Q GAIN WILD-TYPE 146 120
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6Q GAIN MUTATED     32   30
  6Q GAIN WILD-TYPE  146  120
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1              32               146
  CLUS_2              30               120

Clustering(13) Variable = 7P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7P GAIN MUTATED       22     35     12     12
  7P GAIN WILD-TYPE     20     17     20     16
D13V1, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1              22                20
  CLUS_2              35                17
  CLUS_3              12                20
  CLUS_4              12                16
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7P GAIN MUTATED       10     38     11     22
  7P GAIN WILD-TYPE     12     18     12     31
D13V2, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1              10                12
  CLUS_2              38                18
  CLUS_3              11                12
  CLUS_4              22                31
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7P GAIN MUTATED       74    101     59
  7P GAIN WILD-TYPE    119     61     76
D13V3, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1              74               119
  CLUS_2             101                61
  CLUS_3              59                76
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7P GAIN MUTATED       50     70     46
  7P GAIN WILD-TYPE     92     44     54
D13V4, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1              50                92
  CLUS_2              70                44
  CLUS_3              46                54
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7P GAIN MUTATED       25     36     29
  7P GAIN WILD-TYPE     35     37     32
D13V5, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1              25                35
  CLUS_2              36                37
  CLUS_3              29                32
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7P GAIN MUTATED       25     24     23     18
  7P GAIN WILD-TYPE     33     23     26     22
D13V6, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1              25                33
  CLUS_2              24                23
  CLUS_3              23                26
  CLUS_4              18                22
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7P GAIN MUTATED       53     90     58     27
  7P GAIN WILD-TYPE     65     53     85     48
D13V7, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1              53                65
  CLUS_2              90                53
  CLUS_3              58                85
  CLUS_4              27                48
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7P GAIN MUTATED       31     92    105
  7P GAIN WILD-TYPE     62     48    141
D13V8, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1              31                62
  CLUS_2              92                48
  CLUS_3             105               141
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7P GAIN MUTATED       78     70     44     35
  7P GAIN WILD-TYPE     67     60     81     29
D13V9, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1              78                67
  CLUS_2              70                60
  CLUS_3              44                81
  CLUS_4              35                29
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7P GAIN MUTATED       47     71    109
  7P GAIN WILD-TYPE     24     92    121
D13V10, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1              47                24
  CLUS_2              71                92
  CLUS_3             109               121
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7P GAIN MUTATED       72     46     33
  7P GAIN WILD-TYPE     53     66     58
D13V11, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1              72                53
  CLUS_2              46                66
  CLUS_3              33                58
D13V12, binary
                   cls
clus                  0   1
  7P GAIN MUTATED    72  79
  7P GAIN WILD-TYPE 106  71
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7P GAIN MUTATED     72   79
  7P GAIN WILD-TYPE  106   71
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1              72               106
  CLUS_2              79                71

Clustering(14) Variable = 7Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7Q GAIN MUTATED       21     35      8     11
  7Q GAIN WILD-TYPE     21     17     24     17
D14V1, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1              21                21
  CLUS_2              35                17
  CLUS_3               8                24
  CLUS_4              11                17
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7Q GAIN MUTATED        8     38     10     19
  7Q GAIN WILD-TYPE     14     18     13     34
D14V2, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1               8                14
  CLUS_2              38                18
  CLUS_3              10                13
  CLUS_4              19                34
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q GAIN MUTATED       55    105     54
  7Q GAIN WILD-TYPE    138     57     81
D14V3, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1              55               138
  CLUS_2             105                57
  CLUS_3              54                81
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q GAIN MUTATED       38     69     42
  7Q GAIN WILD-TYPE    104     45     58
D14V4, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1              38               104
  CLUS_2              69                45
  CLUS_3              42                58
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q GAIN MUTATED       26     33     28
  7Q GAIN WILD-TYPE     34     40     33
D14V5, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1              26                34
  CLUS_2              33                40
  CLUS_3              28                33
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7Q GAIN MUTATED       22     26     23     16
  7Q GAIN WILD-TYPE     36     21     26     24
D14V6, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1              22                36
  CLUS_2              26                21
  CLUS_3              23                26
  CLUS_4              16                24
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7Q GAIN MUTATED       45     94     43     28
  7Q GAIN WILD-TYPE     73     49    100     47
D14V7, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1              45                73
  CLUS_2              94                49
  CLUS_3              43               100
  CLUS_4              28                47
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q GAIN MUTATED       28     93     89
  7Q GAIN WILD-TYPE     65     47    157
D14V8, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1              28                65
  CLUS_2              93                47
  CLUS_3              89               157
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7Q GAIN MUTATED       69     60     39     39
  7Q GAIN WILD-TYPE     76     70     86     25
D14V9, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1              69                76
  CLUS_2              60                70
  CLUS_3              39                86
  CLUS_4              39                25
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q GAIN MUTATED       48     67     92
  7Q GAIN WILD-TYPE     23     96    138
D14V10, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1              48                23
  CLUS_2              67                96
  CLUS_3              92               138
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q GAIN MUTATED       66     37     33
  7Q GAIN WILD-TYPE     59     75     58
D14V11, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1              66                59
  CLUS_2              37                75
  CLUS_3              33                58
D14V12, binary
                   cls
clus                  0   1
  7Q GAIN MUTATED    59  77
  7Q GAIN WILD-TYPE 119  73
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7Q GAIN MUTATED     59   77
  7Q GAIN WILD-TYPE  119   73
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1              59               119
  CLUS_2              77                73

Clustering(15) Variable = 8P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8P GAIN MUTATED       14     11      8      8
  8P GAIN WILD-TYPE     28     41     24     20
D15V1, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1              14                28
  CLUS_2              11                41
  CLUS_3               8                24
  CLUS_4               8                20
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8P GAIN MUTATED        7     12      8     14
  8P GAIN WILD-TYPE     15     44     15     39
D15V2, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1               7                15
  CLUS_2              12                44
  CLUS_3               8                15
  CLUS_4              14                39
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P GAIN MUTATED       49     34     40
  8P GAIN WILD-TYPE    144    128     95
D15V3, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1              49               144
  CLUS_2              34               128
  CLUS_3              40                95
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P GAIN MUTATED       38     19     27
  8P GAIN WILD-TYPE    104     95     73
D15V4, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1              38               104
  CLUS_2              19                95
  CLUS_3              27                73
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P GAIN MUTATED       17     19     21
  8P GAIN WILD-TYPE     43     54     40
D15V5, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1              17                43
  CLUS_2              19                54
  CLUS_3              21                40
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8P GAIN MUTATED       18     14     12     13
  8P GAIN WILD-TYPE     40     33     37     27
D15V6, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1              18                40
  CLUS_2              14                33
  CLUS_3              12                37
  CLUS_4              13                27
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8P GAIN MUTATED       30     26     42     23
  8P GAIN WILD-TYPE     88    117    101     52
D15V7, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1              30                88
  CLUS_2              26               117
  CLUS_3              42               101
  CLUS_4              23                52
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P GAIN MUTATED       30     24     67
  8P GAIN WILD-TYPE     63    116    179
D15V8, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1              30                63
  CLUS_2              24               116
  CLUS_3              67               179
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8P GAIN MUTATED       34     31     37     13
  8P GAIN WILD-TYPE    111     99     88     51
D15V9, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1              34               111
  CLUS_2              31                99
  CLUS_3              37                88
  CLUS_4              13                51
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P GAIN MUTATED       16     42     57
  8P GAIN WILD-TYPE     55    121    173
D15V10, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1              16                55
  CLUS_2              42               121
  CLUS_3              57               173
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P GAIN MUTATED       30     27     22
  8P GAIN WILD-TYPE     95     85     69
D15V11, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1              30                95
  CLUS_2              27                85
  CLUS_3              22                69
D15V12, binary
                   cls
clus                  0   1
  8P GAIN MUTATED    47  32
  8P GAIN WILD-TYPE 131 118
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8P GAIN MUTATED     47   32
  8P GAIN WILD-TYPE  131  118
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1              47               131
  CLUS_2              32               118

Clustering(16) Variable = 8Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8Q GAIN MUTATED       26     18     16     16
  8Q GAIN WILD-TYPE     16     34     16     12
D16V1, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1              26                16
  CLUS_2              18                34
  CLUS_3              16                16
  CLUS_4              16                12
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8Q GAIN MUTATED       13     20     12     31
  8Q GAIN WILD-TYPE      9     36     11     22
D16V2, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1              13                 9
  CLUS_2              20                36
  CLUS_3              12                11
  CLUS_4              31                22
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q GAIN MUTATED       97     71     79
  8Q GAIN WILD-TYPE     96     91     56
D16V3, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1              97                96
  CLUS_2              71                91
  CLUS_3              79                56
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q GAIN MUTATED       78     44     58
  8Q GAIN WILD-TYPE     64     70     42
D16V4, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1              78                64
  CLUS_2              44                70
  CLUS_3              58                42
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q GAIN MUTATED       25     40     34
  8Q GAIN WILD-TYPE     35     33     27
D16V5, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1              25                35
  CLUS_2              40                33
  CLUS_3              34                27
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8Q GAIN MUTATED       28     25     25     21
  8Q GAIN WILD-TYPE     30     22     24     19
D16V6, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1              28                30
  CLUS_2              25                22
  CLUS_3              25                24
  CLUS_4              21                19
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8Q GAIN MUTATED       64     56     82     39
  8Q GAIN WILD-TYPE     54     87     61     36
D16V7, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1              64                54
  CLUS_2              56                87
  CLUS_3              82                61
  CLUS_4              39                36
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q GAIN MUTATED       53     58    130
  8Q GAIN WILD-TYPE     40     82    116
D16V8, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1              53                40
  CLUS_2              58                82
  CLUS_3             130               116
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8Q GAIN MUTATED       71     65     72     22
  8Q GAIN WILD-TYPE     74     65     53     42
D16V9, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1              71                74
  CLUS_2              65                65
  CLUS_3              72                53
  CLUS_4              22                42
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q GAIN MUTATED       28     88    114
  8Q GAIN WILD-TYPE     43     75    116
D16V10, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1              28                43
  CLUS_2              88                75
  CLUS_3             114               116
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q GAIN MUTATED       64     63     40
  8Q GAIN WILD-TYPE     61     49     51
D16V11, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1              64                61
  CLUS_2              63                49
  CLUS_3              40                51
D16V12, binary
                   cls
clus                 0  1
  8Q GAIN MUTATED   96 71
  8Q GAIN WILD-TYPE 82 79
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8Q GAIN MUTATED     96   71
  8Q GAIN WILD-TYPE   82   79
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1              96                82
  CLUS_2              71                79

Clustering(17) Variable = 9P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9P GAIN MUTATED        1      8      5      5
  9P GAIN WILD-TYPE     41     44     27     23
D17V1, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1               1                41
  CLUS_2               8                44
  CLUS_3               5                27
  CLUS_4               5                23
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9P GAIN MUTATED        3      9      0      7
  9P GAIN WILD-TYPE     19     47     23     46
D17V2, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1               3                19
  CLUS_2               9                47
  CLUS_3               0                23
  CLUS_4               7                46
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P GAIN MUTATED       19     34      7
  9P GAIN WILD-TYPE    174    128    128
D17V3, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1              19               174
  CLUS_2              34               128
  CLUS_3               7               128
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P GAIN MUTATED       10     28      8
  9P GAIN WILD-TYPE    132     86     92
D17V4, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1              10               132
  CLUS_2              28                86
  CLUS_3               8                92
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P GAIN MUTATED        9      4      5
  9P GAIN WILD-TYPE     51     69     56
D17V5, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1               9                51
  CLUS_2               4                69
  CLUS_3               5                56
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9P GAIN MUTATED       11      4      2      1
  9P GAIN WILD-TYPE     47     43     47     39
D17V6, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1              11                47
  CLUS_2               4                43
  CLUS_3               2                47
  CLUS_4               1                39
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9P GAIN MUTATED        5     35     13      7
  9P GAIN WILD-TYPE    113    108    130     68
D17V7, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1               5               113
  CLUS_2              35               108
  CLUS_3              13               130
  CLUS_4               7                68
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P GAIN MUTATED       10     35     15
  9P GAIN WILD-TYPE     83    105    231
D17V8, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1              10                83
  CLUS_2              35               105
  CLUS_3              15               231
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9P GAIN MUTATED       23     11     12     12
  9P GAIN WILD-TYPE    122    119    113     52
D17V9, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1              23               122
  CLUS_2              11               119
  CLUS_3              12               113
  CLUS_4              12                52
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P GAIN MUTATED       12     15     31
  9P GAIN WILD-TYPE     59    148    199
D17V10, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1              12                59
  CLUS_2              15               148
  CLUS_3              31               199
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P GAIN MUTATED       21      5     12
  9P GAIN WILD-TYPE    104    107     79
D17V11, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1              21               104
  CLUS_2               5               107
  CLUS_3              12                79
D17V12, binary
                   cls
clus                  0   1
  9P GAIN MUTATED    15  23
  9P GAIN WILD-TYPE 163 127
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9P GAIN MUTATED     15   23
  9P GAIN WILD-TYPE  163  127
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1              15               163
  CLUS_2              23               127

Clustering(18) Variable = 9Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9Q GAIN MUTATED        3     17      5      7
  9Q GAIN WILD-TYPE     39     35     27     21
D18V1, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1               3                39
  CLUS_2              17                35
  CLUS_3               5                27
  CLUS_4               7                21
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9Q GAIN MUTATED        3     19      2      8
  9Q GAIN WILD-TYPE     19     37     21     45
D18V2, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1               3                19
  CLUS_2              19                37
  CLUS_3               2                21
  CLUS_4               8                45
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q GAIN MUTATED       22     60      9
  9Q GAIN WILD-TYPE    171    102    126
D18V3, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1              22               171
  CLUS_2              60               102
  CLUS_3               9               126
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q GAIN MUTATED       10     44     11
  9Q GAIN WILD-TYPE    132     70     89
D18V4, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1              10               132
  CLUS_2              44                70
  CLUS_3              11                89
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q GAIN MUTATED       13      6     12
  9Q GAIN WILD-TYPE     47     67     49
D18V5, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1              13                47
  CLUS_2               6                67
  CLUS_3              12                49
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9Q GAIN MUTATED       15      9      2      5
  9Q GAIN WILD-TYPE     43     38     47     35
D18V6, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1              15                43
  CLUS_2               9                38
  CLUS_3               2                47
  CLUS_4               5                35
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9Q GAIN MUTATED        6     58     21      5
  9Q GAIN WILD-TYPE    112     85    122     70
D18V7, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1               6               112
  CLUS_2              58                85
  CLUS_3              21               122
  CLUS_4               5                70
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q GAIN MUTATED       14     59     17
  9Q GAIN WILD-TYPE     79     81    229
D18V8, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1              14                79
  CLUS_2              59                81
  CLUS_3              17               229
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9Q GAIN MUTATED       32     19     12     24
  9Q GAIN WILD-TYPE    113    111    113     40
D18V9, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1              32               113
  CLUS_2              19               111
  CLUS_3              12               113
  CLUS_4              24                40
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q GAIN MUTATED       25     24     38
  9Q GAIN WILD-TYPE     46    139    192
D18V10, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1              25                46
  CLUS_2              24               139
  CLUS_3              38               192
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q GAIN MUTATED       32      9     15
  9Q GAIN WILD-TYPE     93    103     76
D18V11, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1              32                93
  CLUS_2               9               103
  CLUS_3              15                76
D18V12, binary
                   cls
clus                  0   1
  9Q GAIN MUTATED    19  37
  9Q GAIN WILD-TYPE 159 113
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9Q GAIN MUTATED     19   37
  9Q GAIN WILD-TYPE  159  113
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1              19               159
  CLUS_2              37               113

Clustering(19) Variable = 10P GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10P GAIN MUTATED        7      4      4      6
  10P GAIN WILD-TYPE     35     48     28     22
D19V1, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1                7                 35
  CLUS_2                4                 48
  CLUS_3                4                 28
  CLUS_4                6                 22
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10P GAIN MUTATED        4      6      3      8
  10P GAIN WILD-TYPE     18     50     20     45
D19V2, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1                4                 18
  CLUS_2                6                 50
  CLUS_3                3                 20
  CLUS_4                8                 45
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P GAIN MUTATED       22     26     28
  10P GAIN WILD-TYPE    171    136    107
D19V3, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1               22                171
  CLUS_2               26                136
  CLUS_3               28                107
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P GAIN MUTATED       23     13     21
  10P GAIN WILD-TYPE    119    101     79
D19V4, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1               23                119
  CLUS_2               13                101
  CLUS_3               21                 79
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P GAIN MUTATED        5     17      9
  10P GAIN WILD-TYPE     55     56     52
D19V5, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1                5                 55
  CLUS_2               17                 56
  CLUS_3                9                 52
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10P GAIN MUTATED        8      4     14      5
  10P GAIN WILD-TYPE     50     43     35     35
D19V6, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1                8                 50
  CLUS_2                4                 43
  CLUS_3               14                 35
  CLUS_4                5                 35
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10P GAIN MUTATED       23     18     27      7
  10P GAIN WILD-TYPE     95    125    116     68
D19V7, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1               23                 95
  CLUS_2               18                125
  CLUS_3               27                116
  CLUS_4                7                 68
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P GAIN MUTATED       17     18     40
  10P GAIN WILD-TYPE     76    122    206
D19V8, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1               17                 76
  CLUS_2               18                122
  CLUS_3               40                206
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10P GAIN MUTATED       20     25     23      3
  10P GAIN WILD-TYPE    125    105    102     61
D19V9, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1               20                125
  CLUS_2               25                105
  CLUS_3               23                102
  CLUS_4                3                 61
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P GAIN MUTATED        3     37     31
  10P GAIN WILD-TYPE     68    126    199
D19V10, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1                3                 68
  CLUS_2               37                126
  CLUS_3               31                199
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P GAIN MUTATED       25     17     13
  10P GAIN WILD-TYPE    100     95     78
D19V11, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1               25                100
  CLUS_2               17                 95
  CLUS_3               13                 78
D19V12, binary
                    cls
clus                   0   1
  10P GAIN MUTATED    28  27
  10P GAIN WILD-TYPE 150 123
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10P GAIN MUTATED     28   27
  10P GAIN WILD-TYPE  150  123
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1               28                150
  CLUS_2               27                123

Clustering(20) Variable = 10Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10Q GAIN MUTATED        4      1      1      4
  10Q GAIN WILD-TYPE     38     51     31     24
D20V1, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1                4                 38
  CLUS_2                1                 51
  CLUS_3                1                 31
  CLUS_4                4                 24
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10Q GAIN MUTATED        2      1      2      5
  10Q GAIN WILD-TYPE     20     55     21     48
D20V2, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1                2                 20
  CLUS_2                1                 55
  CLUS_3                2                 21
  CLUS_4                5                 48
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q GAIN MUTATED       12     13     18
  10Q GAIN WILD-TYPE    181    149    117
D20V3, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1               12                181
  CLUS_2               13                149
  CLUS_3               18                117
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q GAIN MUTATED       15      9     12
  10Q GAIN WILD-TYPE    127    105     88
D20V4, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1               15                127
  CLUS_2                9                105
  CLUS_3               12                 88
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q GAIN MUTATED        5     14      3
  10Q GAIN WILD-TYPE     55     59     58
D20V5, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1                5                 55
  CLUS_2               14                 59
  CLUS_3                3                 58
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10Q GAIN MUTATED        7      2      9      4
  10Q GAIN WILD-TYPE     51     45     40     36
D20V6, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1                7                 51
  CLUS_2                2                 45
  CLUS_3                9                 40
  CLUS_4                4                 36
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10Q GAIN MUTATED       12      8     18      4
  10Q GAIN WILD-TYPE    106    135    125     71
D20V7, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1               12                106
  CLUS_2                8                135
  CLUS_3               18                125
  CLUS_4                4                 71
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q GAIN MUTATED       11      7     24
  10Q GAIN WILD-TYPE     82    133    222
D20V8, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1               11                 82
  CLUS_2                7                133
  CLUS_3               24                222
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10Q GAIN MUTATED       12     14     13      2
  10Q GAIN WILD-TYPE    133    116    112     62
D20V9, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1               12                133
  CLUS_2               14                116
  CLUS_3               13                112
  CLUS_4                2                 62
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q GAIN MUTATED        3     19     19
  10Q GAIN WILD-TYPE     68    144    211
D20V10, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1                3                 68
  CLUS_2               19                144
  CLUS_3               19                211
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q GAIN MUTATED       15     11      7
  10Q GAIN WILD-TYPE    110    101     84
D20V11, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1               15                110
  CLUS_2               11                101
  CLUS_3                7                 84
D20V12, binary
                    cls
clus                   0   1
  10Q GAIN MUTATED    17  16
  10Q GAIN WILD-TYPE 161 134
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10Q GAIN MUTATED     17   16
  10Q GAIN WILD-TYPE  161  134
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1               17                161
  CLUS_2               16                134

Clustering(21) Variable = 11P GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11P GAIN MUTATED        8      9      3      5
  11P GAIN WILD-TYPE     34     43     29     23
D21V1, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                8                 34
  CLUS_2                9                 43
  CLUS_3                3                 29
  CLUS_4                5                 23
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11P GAIN MUTATED        3      9      4      9
  11P GAIN WILD-TYPE     19     47     19     44
D21V2, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                3                 19
  CLUS_2                9                 47
  CLUS_3                4                 19
  CLUS_4                9                 44
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P GAIN MUTATED       19     28     25
  11P GAIN WILD-TYPE    174    134    110
D21V3, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1               19                174
  CLUS_2               28                134
  CLUS_3               25                110
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P GAIN MUTATED       15     18     18
  11P GAIN WILD-TYPE    127     96     82
D21V4, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1               15                127
  CLUS_2               18                 96
  CLUS_3               18                 82
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P GAIN MUTATED       13      9     11
  11P GAIN WILD-TYPE     47     64     50
D21V5, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1               13                 47
  CLUS_2                9                 64
  CLUS_3               11                 50
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11P GAIN MUTATED        9     15      8      1
  11P GAIN WILD-TYPE     49     32     41     39
D21V6, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                9                 49
  CLUS_2               15                 32
  CLUS_3                8                 41
  CLUS_4                1                 39
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11P GAIN MUTATED       16     23     24      9
  11P GAIN WILD-TYPE    102    120    119     66
D21V7, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1               16                102
  CLUS_2               23                120
  CLUS_3               24                119
  CLUS_4                9                 66
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P GAIN MUTATED       15     20     37
  11P GAIN WILD-TYPE     78    120    209
D21V8, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1               15                 78
  CLUS_2               20                120
  CLUS_3               37                209
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11P GAIN MUTATED       25     29     12      5
  11P GAIN WILD-TYPE    120    101    113     59
D21V9, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1               25                120
  CLUS_2               29                101
  CLUS_3               12                113
  CLUS_4                5                 59
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P GAIN MUTATED        9     30     32
  11P GAIN WILD-TYPE     62    133    198
D21V10, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                9                 62
  CLUS_2               30                133
  CLUS_3               32                198
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P GAIN MUTATED       24     13      9
  11P GAIN WILD-TYPE    101     99     82
D21V11, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1               24                101
  CLUS_2               13                 99
  CLUS_3                9                 82
D21V12, binary
                    cls
clus                   0   1
  11P GAIN MUTATED    24  22
  11P GAIN WILD-TYPE 154 128
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11P GAIN MUTATED     24   22
  11P GAIN WILD-TYPE  154  128
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1               24                154
  CLUS_2               22                128

Clustering(22) Variable = 11Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11Q GAIN MUTATED       12      7      2      9
  11Q GAIN WILD-TYPE     30     45     30     19
D22V1, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1               12                 30
  CLUS_2                7                 45
  CLUS_3                2                 30
  CLUS_4                9                 19
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11Q GAIN MUTATED        7      7      7      9
  11Q GAIN WILD-TYPE     15     49     16     44
D22V2, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                7                 15
  CLUS_2                7                 49
  CLUS_3                7                 16
  CLUS_4                9                 44
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q GAIN MUTATED       22     29     38
  11Q GAIN WILD-TYPE    171    133     97
D22V3, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1               22                171
  CLUS_2               29                133
  CLUS_3               38                 97
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q GAIN MUTATED       22     20     22
  11Q GAIN WILD-TYPE    120     94     78
D22V4, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1               22                120
  CLUS_2               20                 94
  CLUS_3               22                 78
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q GAIN MUTATED       17     14     12
  11Q GAIN WILD-TYPE     43     59     49
D22V5, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1               17                 43
  CLUS_2               14                 59
  CLUS_3               12                 49
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11Q GAIN MUTATED       15     13     14      1
  11Q GAIN WILD-TYPE     43     34     35     39
D22V6, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1               15                 43
  CLUS_2               13                 34
  CLUS_3               14                 35
  CLUS_4                1                 39
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11Q GAIN MUTATED       23     19     33     13
  11Q GAIN WILD-TYPE     95    124    110     62
D22V7, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1               23                 95
  CLUS_2               19                124
  CLUS_3               33                110
  CLUS_4               13                 62
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q GAIN MUTATED       25     18     45
  11Q GAIN WILD-TYPE     68    122    201
D22V8, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1               25                 68
  CLUS_2               18                122
  CLUS_3               45                201
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11Q GAIN MUTATED       33     29     19      6
  11Q GAIN WILD-TYPE    112    101    106     58
D22V9, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1               33                112
  CLUS_2               29                101
  CLUS_3               19                106
  CLUS_4                6                 58
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q GAIN MUTATED       11     35     41
  11Q GAIN WILD-TYPE     60    128    189
D22V10, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1               11                 60
  CLUS_2               35                128
  CLUS_3               41                189
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q GAIN MUTATED       28     19     11
  11Q GAIN WILD-TYPE     97     93     80
D22V11, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1               28                 97
  CLUS_2               19                 93
  CLUS_3               11                 80
D22V12, binary
                    cls
clus                   0   1
  11Q GAIN MUTATED    30  28
  11Q GAIN WILD-TYPE 148 122
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11Q GAIN MUTATED     30   28
  11Q GAIN WILD-TYPE  148  122
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1               30                148
  CLUS_2               28                122

Clustering(23) Variable = 12P GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12P GAIN MUTATED       11     30     13     14
  12P GAIN WILD-TYPE     31     22     19     14
D23V1, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1               11                 31
  CLUS_2               30                 22
  CLUS_3               13                 19
  CLUS_4               14                 14
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12P GAIN MUTATED        9     32      7     20
  12P GAIN WILD-TYPE     13     24     16     33
D23V2, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1                9                 13
  CLUS_2               32                 24
  CLUS_3                7                 16
  CLUS_4               20                 33
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12P GAIN MUTATED       54     98     72
  12P GAIN WILD-TYPE    139     64     63
D23V3, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1               54                139
  CLUS_2               98                 64
  CLUS_3               72                 63
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12P GAIN MUTATED       51     65     53
  12P GAIN WILD-TYPE     91     49     47
D23V4, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1               51                 91
  CLUS_2               65                 49
  CLUS_3               53                 47
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12P GAIN MUTATED       35     33     27
  12P GAIN WILD-TYPE     25     40     34
D23V5, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1               35                 25
  CLUS_2               33                 40
  CLUS_3               27                 34
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12P GAIN MUTATED       29     25     25     16
  12P GAIN WILD-TYPE     29     22     24     24
D23V6, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1               29                 29
  CLUS_2               25                 22
  CLUS_3               25                 24
  CLUS_4               16                 24
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12P GAIN MUTATED       38     81     75     26
  12P GAIN WILD-TYPE     80     62     68     49
D23V7, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1               38                 80
  CLUS_2               81                 62
  CLUS_3               75                 68
  CLUS_4               26                 49
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12P GAIN MUTATED       49     76     95
  12P GAIN WILD-TYPE     44     64    151
D23V8, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1               49                 44
  CLUS_2               76                 64
  CLUS_3               95                151
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12P GAIN MUTATED       64     72     46     32
  12P GAIN WILD-TYPE     81     58     79     32
D23V9, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1               64                 81
  CLUS_2               72                 58
  CLUS_3               46                 79
  CLUS_4               32                 32
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12P GAIN MUTATED       41     77     96
  12P GAIN WILD-TYPE     30     86    134
D23V10, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1               41                 30
  CLUS_2               77                 86
  CLUS_3               96                134
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12P GAIN MUTATED       67     49     35
  12P GAIN WILD-TYPE     58     63     56
D23V11, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1               67                 58
  CLUS_2               49                 63
  CLUS_3               35                 56
D23V12, binary
                    cls
clus                   0   1
  12P GAIN MUTATED    75  76
  12P GAIN WILD-TYPE 103  74
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12P GAIN MUTATED     75   76
  12P GAIN WILD-TYPE  103   74
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1               75                103
  CLUS_2               76                 74

Clustering(24) Variable = 12Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12Q GAIN MUTATED        8     20     10     15
  12Q GAIN WILD-TYPE     34     32     22     13
D24V1, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1                8                 34
  CLUS_2               20                 32
  CLUS_3               10                 22
  CLUS_4               15                 13
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12Q GAIN MUTATED       10     22      7     14
  12Q GAIN WILD-TYPE     12     34     16     39
D24V2, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1               10                 12
  CLUS_2               22                 34
  CLUS_3                7                 16
  CLUS_4               14                 39
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12Q GAIN MUTATED       37     73     41
  12Q GAIN WILD-TYPE    156     89     94
D24V3, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1               37                156
  CLUS_2               73                 89
  CLUS_3               41                 94
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12Q GAIN MUTATED       28     44     34
  12Q GAIN WILD-TYPE    114     70     66
D24V4, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1               28                114
  CLUS_2               44                 70
  CLUS_3               34                 66
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12Q GAIN MUTATED       22     20     20
  12Q GAIN WILD-TYPE     38     53     41
D24V5, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1               22                 38
  CLUS_2               20                 53
  CLUS_3               20                 41
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12Q GAIN MUTATED       21     17     13     11
  12Q GAIN WILD-TYPE     37     30     36     29
D24V6, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1               21                 37
  CLUS_2               17                 30
  CLUS_3               13                 36
  CLUS_4               11                 29
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12Q GAIN MUTATED       24     58     44     21
  12Q GAIN WILD-TYPE     94     85     99     54
D24V7, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1               24                 94
  CLUS_2               58                 85
  CLUS_3               44                 99
  CLUS_4               21                 54
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12Q GAIN MUTATED       36     54     57
  12Q GAIN WILD-TYPE     57     86    189
D24V8, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1               36                 57
  CLUS_2               54                 86
  CLUS_3               57                189
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12Q GAIN MUTATED       46     42     30     23
  12Q GAIN WILD-TYPE     99     88     95     41
D24V9, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1               46                 99
  CLUS_2               42                 88
  CLUS_3               30                 95
  CLUS_4               23                 41
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12Q GAIN MUTATED       30     42     69
  12Q GAIN WILD-TYPE     41    121    161
D24V10, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1               30                 41
  CLUS_2               42                121
  CLUS_3               69                161
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12Q GAIN MUTATED       51     21     21
  12Q GAIN WILD-TYPE     74     91     70
D24V11, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1               51                 74
  CLUS_2               21                 91
  CLUS_3               21                 70
D24V12, binary
                    cls
clus                   0   1
  12Q GAIN MUTATED    43  50
  12Q GAIN WILD-TYPE 135 100
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12Q GAIN MUTATED     43   50
  12Q GAIN WILD-TYPE  135  100
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1               43                135
  CLUS_2               50                100

Clustering(25) Variable = 13Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  13Q GAIN MUTATED        3      6      2      4
  13Q GAIN WILD-TYPE     39     46     30     24
D25V1, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1                3                 39
  CLUS_2                6                 46
  CLUS_3                2                 30
  CLUS_4                4                 24
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  13Q GAIN MUTATED        4      6      1      4
  13Q GAIN WILD-TYPE     18     50     22     49
D25V2, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1                4                 18
  CLUS_2                6                 50
  CLUS_3                1                 22
  CLUS_4                4                 49
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q GAIN MUTATED       15     16      8
  13Q GAIN WILD-TYPE    178    146    127
D25V3, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1               15                178
  CLUS_2               16                146
  CLUS_3                8                127
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q GAIN MUTATED       10     10      7
  13Q GAIN WILD-TYPE    132    104     93
D25V4, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1               10                132
  CLUS_2               10                104
  CLUS_3                7                 93
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q GAIN MUTATED        3      5      7
  13Q GAIN WILD-TYPE     57     68     54
D25V5, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1                3                 57
  CLUS_2                5                 68
  CLUS_3                7                 54
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  13Q GAIN MUTATED        4      5      4      2
  13Q GAIN WILD-TYPE     54     42     45     38
D25V6, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1                4                 54
  CLUS_2                5                 42
  CLUS_3                4                 45
  CLUS_4                2                 38
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  13Q GAIN MUTATED       13     11     10      4
  13Q GAIN WILD-TYPE    105    132    133     71
D25V7, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1               13                105
  CLUS_2               11                132
  CLUS_3               10                133
  CLUS_4                4                 71
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q GAIN MUTATED        6     12     20
  13Q GAIN WILD-TYPE     87    128    226
D25V8, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1                6                 87
  CLUS_2               12                128
  CLUS_3               20                226
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  13Q GAIN MUTATED       16      8     10      2
  13Q GAIN WILD-TYPE    129    122    115     62
D25V9, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1               16                129
  CLUS_2                8                122
  CLUS_3               10                115
  CLUS_4                2                 62
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q GAIN MUTATED        4     14     18
  13Q GAIN WILD-TYPE     67    149    212
D25V10, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1                4                 67
  CLUS_2               14                149
  CLUS_3               18                212
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q GAIN MUTATED       10     10      4
  13Q GAIN WILD-TYPE    115    102     87
D25V11, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1               10                115
  CLUS_2               10                102
  CLUS_3                4                 87
D25V12, binary
                    cls
clus                   0   1
  13Q GAIN MUTATED    17   7
  13Q GAIN WILD-TYPE 161 143
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  13Q GAIN MUTATED     17    7
  13Q GAIN WILD-TYPE  161  143
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1               17                161
  CLUS_2                7                143

Clustering(26) Variable = 14Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  14Q GAIN MUTATED       16     11      5      7
  14Q GAIN WILD-TYPE     26     41     27     21
D26V1, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1               16                 26
  CLUS_2               11                 41
  CLUS_3                5                 27
  CLUS_4                7                 21
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  14Q GAIN MUTATED        4     11      9     15
  14Q GAIN WILD-TYPE     18     45     14     38
D26V2, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1                4                 18
  CLUS_2               11                 45
  CLUS_3                9                 14
  CLUS_4               15                 38
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q GAIN MUTATED       41     44     39
  14Q GAIN WILD-TYPE    152    118     96
D26V3, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1               41                152
  CLUS_2               44                118
  CLUS_3               39                 96
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q GAIN MUTATED       28     34     29
  14Q GAIN WILD-TYPE    114     80     71
D26V4, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1               28                114
  CLUS_2               34                 80
  CLUS_3               29                 71
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q GAIN MUTATED       12     23     13
  14Q GAIN WILD-TYPE     48     50     48
D26V5, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1               12                 48
  CLUS_2               23                 50
  CLUS_3               13                 48
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  14Q GAIN MUTATED       13     14     16      5
  14Q GAIN WILD-TYPE     45     33     33     35
D26V6, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1               13                 45
  CLUS_2               14                 33
  CLUS_3               16                 33
  CLUS_4                5                 35
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  14Q GAIN MUTATED       40     36     27     20
  14Q GAIN WILD-TYPE     78    107    116     55
D26V7, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1               40                 78
  CLUS_2               36                107
  CLUS_3               27                116
  CLUS_4               20                 55
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q GAIN MUTATED       14     35     74
  14Q GAIN WILD-TYPE     79    105    172
D26V8, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1               14                 79
  CLUS_2               35                105
  CLUS_3               74                172
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  14Q GAIN MUTATED       35     46     33      7
  14Q GAIN WILD-TYPE    110     84     92     57
D26V9, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1               35                110
  CLUS_2               46                 84
  CLUS_3               33                 92
  CLUS_4                7                 57
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q GAIN MUTATED       10     47     64
  14Q GAIN WILD-TYPE     61    116    166
D26V10, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1               10                 61
  CLUS_2               47                116
  CLUS_3               64                166
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q GAIN MUTATED       35     32     17
  14Q GAIN WILD-TYPE     90     80     74
D26V11, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1               35                 90
  CLUS_2               32                 80
  CLUS_3               17                 74
D26V12, binary
                    cls
clus                   0   1
  14Q GAIN MUTATED    46  38
  14Q GAIN WILD-TYPE 132 112
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  14Q GAIN MUTATED     46   38
  14Q GAIN WILD-TYPE  132  112
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1               46                132
  CLUS_2               38                112

Clustering(27) Variable = 15Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  15Q GAIN MUTATED        9     14      7      5
  15Q GAIN WILD-TYPE     33     38     25     23
D27V1, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1                9                 33
  CLUS_2               14                 38
  CLUS_3                7                 25
  CLUS_4                5                 23
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  15Q GAIN MUTATED        3     16      5     11
  15Q GAIN WILD-TYPE     19     40     18     42
D27V2, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1                3                 19
  CLUS_2               16                 40
  CLUS_3                5                 18
  CLUS_4               11                 42
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q GAIN MUTATED       26     45     33
  15Q GAIN WILD-TYPE    167    117    102
D27V3, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1               26                167
  CLUS_2               45                117
  CLUS_3               33                102
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q GAIN MUTATED       19     36     19
  15Q GAIN WILD-TYPE    123     78     81
D27V4, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1               19                123
  CLUS_2               36                 78
  CLUS_3               19                 81
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q GAIN MUTATED        9     15     17
  15Q GAIN WILD-TYPE     51     58     44
D27V5, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1                9                 51
  CLUS_2               15                 58
  CLUS_3               17                 44
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  15Q GAIN MUTATED       10     11     10     10
  15Q GAIN WILD-TYPE     48     36     39     30
D27V6, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1               10                 48
  CLUS_2               11                 36
  CLUS_3               10                 39
  CLUS_4               10                 30
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  15Q GAIN MUTATED       15     46     23     16
  15Q GAIN WILD-TYPE    103     97    120     59
D27V7, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1               15                103
  CLUS_2               46                 97
  CLUS_3               23                120
  CLUS_4               16                 59
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q GAIN MUTATED       13     46     41
  15Q GAIN WILD-TYPE     80     94    205
D27V8, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1               13                 80
  CLUS_2               46                 94
  CLUS_3               41                205
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  15Q GAIN MUTATED       28     26     21     24
  15Q GAIN WILD-TYPE    117    104    104     40
D27V9, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1               28                117
  CLUS_2               26                104
  CLUS_3               21                104
  CLUS_4               24                 40
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q GAIN MUTATED       26     36     37
  15Q GAIN WILD-TYPE     45    127    193
D27V10, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1               26                 45
  CLUS_2               36                127
  CLUS_3               37                193
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q GAIN MUTATED       33     14     20
  15Q GAIN WILD-TYPE     92     98     71
D27V11, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1               33                 92
  CLUS_2               14                 98
  CLUS_3               20                 71
D27V12, binary
                    cls
clus                   0   1
  15Q GAIN MUTATED    26  41
  15Q GAIN WILD-TYPE 152 109
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  15Q GAIN MUTATED     26   41
  15Q GAIN WILD-TYPE  152  109
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1               26                152
  CLUS_2               41                109

Clustering(28) Variable = 16P GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16P GAIN MUTATED        5     11      7      8
  16P GAIN WILD-TYPE     37     41     25     20
D28V1, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1                5                 37
  CLUS_2               11                 41
  CLUS_3                7                 25
  CLUS_4                8                 20
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16P GAIN MUTATED        9     12      4      6
  16P GAIN WILD-TYPE     13     44     19     47
D28V2, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1                9                 13
  CLUS_2               12                 44
  CLUS_3                4                 19
  CLUS_4                6                 47
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P GAIN MUTATED       24     32     30
  16P GAIN WILD-TYPE    169    130    105
D28V3, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1               24                169
  CLUS_2               32                130
  CLUS_3               30                105
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P GAIN MUTATED       20     22     18
  16P GAIN WILD-TYPE    122     92     82
D28V4, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1               20                122
  CLUS_2               22                 92
  CLUS_3               18                 82
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P GAIN MUTATED       14     13     10
  16P GAIN WILD-TYPE     46     60     51
D28V5, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1               14                 46
  CLUS_2               13                 60
  CLUS_3               10                 51
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16P GAIN MUTATED       10      8     10      9
  16P GAIN WILD-TYPE     48     39     39     31
D28V6, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1               10                 48
  CLUS_2                8                 39
  CLUS_3               10                 39
  CLUS_4                9                 31
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16P GAIN MUTATED       19     27     28     10
  16P GAIN WILD-TYPE     99    116    115     65
D28V7, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1               19                 99
  CLUS_2               27                116
  CLUS_3               28                115
  CLUS_4               10                 65
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P GAIN MUTATED       22     26     36
  16P GAIN WILD-TYPE     71    114    210
D28V8, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1               22                 71
  CLUS_2               26                114
  CLUS_3               36                210
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16P GAIN MUTATED       33     26     15      7
  16P GAIN WILD-TYPE    112    104    110     57
D28V9, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1               33                112
  CLUS_2               26                104
  CLUS_3               15                110
  CLUS_4                7                 57
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P GAIN MUTATED       12     33     36
  16P GAIN WILD-TYPE     59    130    194
D28V10, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1               12                 59
  CLUS_2               33                130
  CLUS_3               36                194
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P GAIN MUTATED       28     20      5
  16P GAIN WILD-TYPE     97     92     86
D28V11, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1               28                 97
  CLUS_2               20                 92
  CLUS_3                5                 86
D28V12, binary
                    cls
clus                   0   1
  16P GAIN MUTATED    25  28
  16P GAIN WILD-TYPE 153 122
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16P GAIN MUTATED     25   28
  16P GAIN WILD-TYPE  153  122
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1               25                153
  CLUS_2               28                122

Clustering(29) Variable = 16Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16Q GAIN MUTATED        9     10      5      6
  16Q GAIN WILD-TYPE     33     42     27     22
D29V1, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1                9                 33
  CLUS_2               10                 42
  CLUS_3                5                 27
  CLUS_4                6                 22
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16Q GAIN MUTATED        6     11      6      7
  16Q GAIN WILD-TYPE     16     45     17     46
D29V2, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1                6                 16
  CLUS_2               11                 45
  CLUS_3                6                 17
  CLUS_4                7                 46
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q GAIN MUTATED       23     30     32
  16Q GAIN WILD-TYPE    170    132    103
D29V3, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1               23                170
  CLUS_2               30                132
  CLUS_3               32                103
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q GAIN MUTATED       20     24     16
  16Q GAIN WILD-TYPE    122     90     84
D29V4, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1               20                122
  CLUS_2               24                 90
  CLUS_3               16                 84
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q GAIN MUTATED       11     15      9
  16Q GAIN WILD-TYPE     49     58     52
D29V5, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1               11                 49
  CLUS_2               15                 58
  CLUS_3                9                 52
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16Q GAIN MUTATED        9      6     12      8
  16Q GAIN WILD-TYPE     49     41     37     32
D29V6, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1                9                 49
  CLUS_2                6                 41
  CLUS_3               12                 37
  CLUS_4                8                 32
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16Q GAIN MUTATED       19     29     29      7
  16Q GAIN WILD-TYPE     99    114    114     68
D29V7, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1               19                 99
  CLUS_2               29                114
  CLUS_3               29                114
  CLUS_4                7                 68
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q GAIN MUTATED       22     27     35
  16Q GAIN WILD-TYPE     71    113    211
D29V8, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1               22                 71
  CLUS_2               27                113
  CLUS_3               35                211
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16Q GAIN MUTATED       32     24     15      9
  16Q GAIN WILD-TYPE    113    106    110     55
D29V9, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1               32                113
  CLUS_2               24                106
  CLUS_3               15                110
  CLUS_4                9                 55
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q GAIN MUTATED       13     29     38
  16Q GAIN WILD-TYPE     58    134    192
D29V10, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1               13                 58
  CLUS_2               29                134
  CLUS_3               38                192
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q GAIN MUTATED       26     18      9
  16Q GAIN WILD-TYPE     99     94     82
D29V11, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1               26                 99
  CLUS_2               18                 94
  CLUS_3                9                 82
D29V12, binary
                    cls
clus                   0   1
  16Q GAIN MUTATED    24  29
  16Q GAIN WILD-TYPE 154 121
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16Q GAIN MUTATED     24   29
  16Q GAIN WILD-TYPE  154  121
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1               24                154
  CLUS_2               29                121

Clustering(30) Variable = 17P GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17P GAIN MUTATED        1     11      1      6
  17P GAIN WILD-TYPE     41     41     31     22
D30V1, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1                1                 41
  CLUS_2               11                 41
  CLUS_3                1                 31
  CLUS_4                6                 22
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17P GAIN MUTATED        3     11      3      2
  17P GAIN WILD-TYPE     19     45     20     51
D30V2, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1                3                 19
  CLUS_2               11                 45
  CLUS_3                3                 20
  CLUS_4                2                 51
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P GAIN MUTATED        9     40     16
  17P GAIN WILD-TYPE    184    122    119
D30V3, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1                9                184
  CLUS_2               40                122
  CLUS_3               16                119
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P GAIN MUTATED       11     28     13
  17P GAIN WILD-TYPE    131     86     87
D30V4, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1               11                131
  CLUS_2               28                 86
  CLUS_3               13                 87
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P GAIN MUTATED        6      7      8
  17P GAIN WILD-TYPE     54     66     53
D30V5, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1                6                 54
  CLUS_2                7                 66
  CLUS_3                8                 53
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17P GAIN MUTATED        3      8      6      4
  17P GAIN WILD-TYPE     55     39     43     36
D30V6, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1                3                 55
  CLUS_2                8                 39
  CLUS_3                6                 43
  CLUS_4                4                 36
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17P GAIN MUTATED        8     35     15      6
  17P GAIN WILD-TYPE    110    108    128     69
D30V7, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1                8                110
  CLUS_2               35                108
  CLUS_3               15                128
  CLUS_4                6                 69
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P GAIN MUTATED       13     33     18
  17P GAIN WILD-TYPE     80    107    228
D30V8, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1               13                 80
  CLUS_2               33                107
  CLUS_3               18                228
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17P GAIN MUTATED       16     21      9     14
  17P GAIN WILD-TYPE    129    109    116     50
D30V9, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1               16                129
  CLUS_2               21                109
  CLUS_3                9                116
  CLUS_4               14                 50
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P GAIN MUTATED       18     21     21
  17P GAIN WILD-TYPE     53    142    209
D30V10, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1               18                 53
  CLUS_2               21                142
  CLUS_3               21                209
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P GAIN MUTATED       27      8     10
  17P GAIN WILD-TYPE     98    104     81
D30V11, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1               27                 98
  CLUS_2                8                104
  CLUS_3               10                 81
D30V12, binary
                    cls
clus                   0   1
  17P GAIN MUTATED    17  28
  17P GAIN WILD-TYPE 161 122
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17P GAIN MUTATED     17   28
  17P GAIN WILD-TYPE  161  122
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1               17                161
  CLUS_2               28                122

Clustering(31) Variable = 17Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17Q GAIN MUTATED        7     27      6     10
  17Q GAIN WILD-TYPE     35     25     26     18
D31V1, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1                7                 35
  CLUS_2               27                 25
  CLUS_3                6                 26
  CLUS_4               10                 18
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17Q GAIN MUTATED        5     29     10      6
  17Q GAIN WILD-TYPE     17     27     13     47
D31V2, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1                5                 17
  CLUS_2               29                 27
  CLUS_3               10                 13
  CLUS_4                6                 47
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q GAIN MUTATED       29     90     37
  17Q GAIN WILD-TYPE    164     72     98
D31V3, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1               29                164
  CLUS_2               90                 72
  CLUS_3               37                 98
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q GAIN MUTATED       23     62     30
  17Q GAIN WILD-TYPE    119     52     70
D31V4, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1               23                119
  CLUS_2               62                 52
  CLUS_3               30                 70
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q GAIN MUTATED       21     22     13
  17Q GAIN WILD-TYPE     39     51     48
D31V5, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1               21                 39
  CLUS_2               22                 51
  CLUS_3               13                 48
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17Q GAIN MUTATED       17     15     16      8
  17Q GAIN WILD-TYPE     41     32     33     32
D31V6, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1               17                 41
  CLUS_2               15                 32
  CLUS_3               16                 33
  CLUS_4                8                 32
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17Q GAIN MUTATED       22     75     40     14
  17Q GAIN WILD-TYPE     96     68    103     61
D31V7, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1               22                 96
  CLUS_2               75                 68
  CLUS_3               40                103
  CLUS_4               14                 61
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q GAIN MUTATED       30     73     48
  17Q GAIN WILD-TYPE     63     67    198
D31V8, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1               30                 63
  CLUS_2               73                 67
  CLUS_3               48                198
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17Q GAIN MUTATED       46     55     20     24
  17Q GAIN WILD-TYPE     99     75    105     40
D31V9, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1               46                 99
  CLUS_2               55                 75
  CLUS_3               20                105
  CLUS_4               24                 40
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q GAIN MUTATED       34     52     59
  17Q GAIN WILD-TYPE     37    111    171
D31V10, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1               34                 37
  CLUS_2               52                111
  CLUS_3               59                171
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q GAIN MUTATED       61     18     25
  17Q GAIN WILD-TYPE     64     94     66
D31V11, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1               61                 64
  CLUS_2               18                 94
  CLUS_3               25                 66
D31V12, binary
                    cls
clus                   0   1
  17Q GAIN MUTATED    37  67
  17Q GAIN WILD-TYPE 141  83
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17Q GAIN MUTATED     37   67
  17Q GAIN WILD-TYPE  141   83
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1               37                141
  CLUS_2               67                 83

Clustering(32) Variable = 18P GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18P GAIN MUTATED        6     24      9      7
  18P GAIN WILD-TYPE     36     28     23     21
D32V1, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1                6                 36
  CLUS_2               24                 28
  CLUS_3                9                 23
  CLUS_4                7                 21
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18P GAIN MUTATED        3     27      5     11
  18P GAIN WILD-TYPE     19     29     18     42
D32V2, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1                3                 19
  CLUS_2               27                 29
  CLUS_3                5                 18
  CLUS_4               11                 42
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P GAIN MUTATED       36     78     33
  18P GAIN WILD-TYPE    157     84    102
D32V3, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1               36                157
  CLUS_2               78                 84
  CLUS_3               33                102
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P GAIN MUTATED       24     52     33
  18P GAIN WILD-TYPE    118     62     67
D32V4, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1               24                118
  CLUS_2               52                 62
  CLUS_3               33                 67
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P GAIN MUTATED       23     24     17
  18P GAIN WILD-TYPE     37     49     44
D32V5, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1               23                 37
  CLUS_2               24                 49
  CLUS_3               17                 44
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18P GAIN MUTATED       22     18     16      8
  18P GAIN WILD-TYPE     36     29     33     32
D32V6, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1               22                 36
  CLUS_2               18                 29
  CLUS_3               16                 33
  CLUS_4                8                 32
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18P GAIN MUTATED       27     61     38     16
  18P GAIN WILD-TYPE     91     82    105     59
D32V7, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1               27                 91
  CLUS_2               61                 82
  CLUS_3               38                105
  CLUS_4               16                 59
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P GAIN MUTATED       27     57     58
  18P GAIN WILD-TYPE     66     83    188
D32V8, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1               27                 66
  CLUS_2               57                 83
  CLUS_3               58                188
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18P GAIN MUTATED       42     50     23     24
  18P GAIN WILD-TYPE    103     80    102     40
D32V9, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1               42                103
  CLUS_2               50                 80
  CLUS_3               23                102
  CLUS_4               24                 40
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P GAIN MUTATED       29     53     57
  18P GAIN WILD-TYPE     42    110    173
D32V10, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1               29                 42
  CLUS_2               53                110
  CLUS_3               57                173
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P GAIN MUTATED       49     21     26
  18P GAIN WILD-TYPE     76     91     65
D32V11, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1               49                 76
  CLUS_2               21                 91
  CLUS_3               26                 65
D32V12, binary
                    cls
clus                   0   1
  18P GAIN MUTATED    39  57
  18P GAIN WILD-TYPE 139  93
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18P GAIN MUTATED     39   57
  18P GAIN WILD-TYPE  139   93
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1               39                139
  CLUS_2               57                 93

Clustering(33) Variable = 18Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18Q GAIN MUTATED        5     21      5      7
  18Q GAIN WILD-TYPE     37     31     27     21
D33V1, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1                5                 37
  CLUS_2               21                 31
  CLUS_3                5                 27
  CLUS_4                7                 21
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18Q GAIN MUTATED        3     22      4      9
  18Q GAIN WILD-TYPE     19     34     19     44
D33V2, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1                3                 19
  CLUS_2               22                 34
  CLUS_3                4                 19
  CLUS_4                9                 44
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q GAIN MUTATED       24     58     23
  18Q GAIN WILD-TYPE    169    104    112
D33V3, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1               24                169
  CLUS_2               58                104
  CLUS_3               23                112
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q GAIN MUTATED       19     36     20
  18Q GAIN WILD-TYPE    123     78     80
D33V4, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1               19                123
  CLUS_2               36                 78
  CLUS_3               20                 80
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q GAIN MUTATED       20     17     15
  18Q GAIN WILD-TYPE     40     56     46
D33V5, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1               20                 40
  CLUS_2               17                 56
  CLUS_3               15                 46
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18Q GAIN MUTATED       20     14     11      7
  18Q GAIN WILD-TYPE     38     33     38     33
D33V6, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1               20                 38
  CLUS_2               14                 33
  CLUS_3               11                 38
  CLUS_4                7                 33
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18Q GAIN MUTATED       16     45     31      8
  18Q GAIN WILD-TYPE    102     98    112     67
D33V7, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1               16                102
  CLUS_2               45                 98
  CLUS_3               31                112
  CLUS_4                8                 67
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q GAIN MUTATED       25     44     31
  18Q GAIN WILD-TYPE     68     96    215
D33V8, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1               25                 68
  CLUS_2               44                 96
  CLUS_3               31                215
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18Q GAIN MUTATED       34     29     17     19
  18Q GAIN WILD-TYPE    111    101    108     45
D33V9, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1               34                111
  CLUS_2               29                101
  CLUS_3               17                108
  CLUS_4               19                 45
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q GAIN MUTATED       24     38     37
  18Q GAIN WILD-TYPE     47    125    193
D33V10, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1               24                 47
  CLUS_2               38                125
  CLUS_3               37                193
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q GAIN MUTATED       31     15     17
  18Q GAIN WILD-TYPE     94     97     74
D33V11, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1               31                 94
  CLUS_2               15                 97
  CLUS_3               17                 74
D33V12, binary
                    cls
clus                   0   1
  18Q GAIN MUTATED    26  37
  18Q GAIN WILD-TYPE 152 113
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18Q GAIN MUTATED     26   37
  18Q GAIN WILD-TYPE  152  113
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1               26                152
  CLUS_2               37                113

Clustering(34) Variable = 19P GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19P GAIN MUTATED        6     16      2      5
  19P GAIN WILD-TYPE     36     36     30     23
D34V1, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1                6                 36
  CLUS_2               16                 36
  CLUS_3                2                 30
  CLUS_4                5                 23
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19P GAIN MUTATED        3     16      4      6
  19P GAIN WILD-TYPE     19     40     19     47
D34V2, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1                3                 19
  CLUS_2               16                 40
  CLUS_3                4                 19
  CLUS_4                6                 47
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P GAIN MUTATED       30     63     16
  19P GAIN WILD-TYPE    163     99    119
D34V3, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1               30                163
  CLUS_2               63                 99
  CLUS_3               16                119
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P GAIN MUTATED       23     43     20
  19P GAIN WILD-TYPE    119     71     80
D34V4, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1               23                119
  CLUS_2               43                 71
  CLUS_3               20                 80
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P GAIN MUTATED       19     10     19
  19P GAIN WILD-TYPE     41     63     42
D34V5, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1               19                 41
  CLUS_2               10                 63
  CLUS_3               19                 42
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19P GAIN MUTATED       20     14      6      8
  19P GAIN WILD-TYPE     38     33     43     32
D34V6, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1               20                 38
  CLUS_2               14                 33
  CLUS_3                6                 43
  CLUS_4                8                 32
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19P GAIN MUTATED       19     47     30     10
  19P GAIN WILD-TYPE     99     96    113     65
D34V7, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1               19                 99
  CLUS_2               47                 96
  CLUS_3               30                113
  CLUS_4               10                 65
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P GAIN MUTATED       24     45     37
  19P GAIN WILD-TYPE     69     95    209
D34V8, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1               24                 69
  CLUS_2               45                 95
  CLUS_3               37                209
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19P GAIN MUTATED       35     24     24     24
  19P GAIN WILD-TYPE    110    106    101     40
D34V9, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1               35                110
  CLUS_2               24                106
  CLUS_3               24                101
  CLUS_4               24                 40
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P GAIN MUTATED       28     28     51
  19P GAIN WILD-TYPE     43    135    179
D34V10, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1               28                 43
  CLUS_2               28                135
  CLUS_3               51                179
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P GAIN MUTATED       39     20     18
  19P GAIN WILD-TYPE     86     92     73
D34V11, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1               39                 86
  CLUS_2               20                 92
  CLUS_3               18                 73
D34V12, binary
                    cls
clus                   0   1
  19P GAIN MUTATED    35  42
  19P GAIN WILD-TYPE 143 108
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19P GAIN MUTATED     35   42
  19P GAIN WILD-TYPE  143  108
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1               35                143
  CLUS_2               42                108

Clustering(35) Variable = 19Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19Q GAIN MUTATED       14     21      5      8
  19Q GAIN WILD-TYPE     28     31     27     20
D35V1, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1               14                 28
  CLUS_2               21                 31
  CLUS_3                5                 27
  CLUS_4                8                 20
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19Q GAIN MUTATED        3     21      8     16
  19Q GAIN WILD-TYPE     19     35     15     37
D35V2, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1                3                 19
  CLUS_2               21                 35
  CLUS_3                8                 15
  CLUS_4               16                 37
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q GAIN MUTATED       44     71     40
  19Q GAIN WILD-TYPE    149     91     95
D35V3, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1               44                149
  CLUS_2               71                 91
  CLUS_3               40                 95
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q GAIN MUTATED       43     50     25
  19Q GAIN WILD-TYPE     99     64     75
D35V4, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1               43                 99
  CLUS_2               50                 64
  CLUS_3               25                 75
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q GAIN MUTATED       21     18     23
  19Q GAIN WILD-TYPE     39     55     38
D35V5, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1               21                 39
  CLUS_2               18                 55
  CLUS_3               23                 38
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19Q GAIN MUTATED       25     16     11     10
  19Q GAIN WILD-TYPE     33     31     38     30
D35V6, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1               25                 33
  CLUS_2               16                 31
  CLUS_3               11                 38
  CLUS_4               10                 30
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19Q GAIN MUTATED       29     53     50     18
  19Q GAIN WILD-TYPE     89     90     93     57
D35V7, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1               29                 89
  CLUS_2               53                 90
  CLUS_3               50                 93
  CLUS_4               18                 57
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q GAIN MUTATED       39     50     61
  19Q GAIN WILD-TYPE     54     90    185
D35V8, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1               39                 54
  CLUS_2               50                 90
  CLUS_3               61                185
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19Q GAIN MUTATED       48     39     38     25
  19Q GAIN WILD-TYPE     97     91     87     39
D35V9, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1               48                 97
  CLUS_2               39                 91
  CLUS_3               38                 87
  CLUS_4               25                 39
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q GAIN MUTATED       28     48     74
  19Q GAIN WILD-TYPE     43    115    156
D35V10, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1               28                 43
  CLUS_2               48                115
  CLUS_3               74                156
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q GAIN MUTATED       49     33     23
  19Q GAIN WILD-TYPE     76     79     68
D35V11, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1               49                 76
  CLUS_2               33                 79
  CLUS_3               23                 68
D35V12, binary
                    cls
clus                   0   1
  19Q GAIN MUTATED    54  51
  19Q GAIN WILD-TYPE 124  99
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19Q GAIN MUTATED     54   51
  19Q GAIN WILD-TYPE  124   99
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1               54                124
  CLUS_2               51                 99

Clustering(36) Variable = 20P GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20P GAIN MUTATED       23     32      9     12
  20P GAIN WILD-TYPE     19     20     23     16
D36V1, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1               23                 19
  CLUS_2               32                 20
  CLUS_3                9                 23
  CLUS_4               12                 16
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20P GAIN MUTATED        8     32     14     22
  20P GAIN WILD-TYPE     14     24      9     31
D36V2, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1                8                 14
  CLUS_2               32                 24
  CLUS_3               14                  9
  CLUS_4               22                 31
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P GAIN MUTATED       73    107     74
  20P GAIN WILD-TYPE    120     55     61
D36V3, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1               73                120
  CLUS_2              107                 55
  CLUS_3               74                 61
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P GAIN MUTATED       64     77     47
  20P GAIN WILD-TYPE     78     37     53
D36V4, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1               64                 78
  CLUS_2               77                 37
  CLUS_3               47                 53
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P GAIN MUTATED       28     37     31
  20P GAIN WILD-TYPE     32     36     30
D36V5, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1               28                 32
  CLUS_2               37                 36
  CLUS_3               31                 30
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20P GAIN MUTATED       27     28     26     15
  20P GAIN WILD-TYPE     31     19     23     25
D36V6, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1               27                 31
  CLUS_2               28                 19
  CLUS_3               26                 23
  CLUS_4               15                 25
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20P GAIN MUTATED       54     86     70     39
  20P GAIN WILD-TYPE     64     57     73     36
D36V7, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1               54                 64
  CLUS_2               86                 57
  CLUS_3               70                 73
  CLUS_4               39                 36
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P GAIN MUTATED       51     86    112
  20P GAIN WILD-TYPE     42     54    134
D36V8, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1               51                 42
  CLUS_2               86                 54
  CLUS_3              112                134
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20P GAIN MUTATED       62     72     68     38
  20P GAIN WILD-TYPE     83     58     57     26
D36V9, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1               62                 83
  CLUS_2               72                 58
  CLUS_3               68                 57
  CLUS_4               38                 26
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P GAIN MUTATED       38     85    117
  20P GAIN WILD-TYPE     33     78    113
D36V10, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1               38                 33
  CLUS_2               85                 78
  CLUS_3              117                113
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P GAIN MUTATED       72     59     44
  20P GAIN WILD-TYPE     53     53     47
D36V11, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1               72                 53
  CLUS_2               59                 53
  CLUS_3               44                 47
D36V12, binary
                    cls
clus                  0  1
  20P GAIN MUTATED   97 78
  20P GAIN WILD-TYPE 81 72
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20P GAIN MUTATED     97   78
  20P GAIN WILD-TYPE   81   72
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1               97                 81
  CLUS_2               78                 72

Clustering(37) Variable = 20Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20Q GAIN MUTATED       23     23     14     15
  20Q GAIN WILD-TYPE     19     29     18     13
D37V1, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1               23                 19
  CLUS_2               23                 29
  CLUS_3               14                 18
  CLUS_4               15                 13
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20Q GAIN MUTATED       13     23     12     27
  20Q GAIN WILD-TYPE      9     33     11     26
D37V2, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1               13                  9
  CLUS_2               23                 33
  CLUS_3               12                 11
  CLUS_4               27                 26
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20Q GAIN MUTATED       75     84     84
  20Q GAIN WILD-TYPE    118     78     51
D37V3, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1               75                118
  CLUS_2               84                 78
  CLUS_3               84                 51
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20Q GAIN MUTATED       62     59     56
  20Q GAIN WILD-TYPE     80     55     44
D37V4, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1               62                 80
  CLUS_2               59                 55
  CLUS_3               56                 44
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20Q GAIN MUTATED       29     39     26
  20Q GAIN WILD-TYPE     31     34     35
D37V5, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1               29                 31
  CLUS_2               39                 34
  CLUS_3               26                 35
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20Q GAIN MUTATED       31     21     26     16
  20Q GAIN WILD-TYPE     27     26     23     24
D37V6, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1               31                 27
  CLUS_2               21                 26
  CLUS_3               26                 23
  CLUS_4               16                 24
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20Q GAIN MUTATED       64     64     74     36
  20Q GAIN WILD-TYPE     54     79     69     39
D37V7, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1               64                 54
  CLUS_2               64                 79
  CLUS_3               74                 69
  CLUS_4               36                 39
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20Q GAIN MUTATED       53     65    120
  20Q GAIN WILD-TYPE     40     75    126
D37V8, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1               53                 40
  CLUS_2               65                 75
  CLUS_3              120                126
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20Q GAIN MUTATED       61     74     66     28
  20Q GAIN WILD-TYPE     84     56     59     36
D37V9, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1               61                 84
  CLUS_2               74                 56
  CLUS_3               66                 59
  CLUS_4               28                 36
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20Q GAIN MUTATED       26     95    108
  20Q GAIN WILD-TYPE     45     68    122
D37V10, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1               26                 45
  CLUS_2               95                 68
  CLUS_3              108                122
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20Q GAIN MUTATED       67     57     41
  20Q GAIN WILD-TYPE     58     55     50
D37V11, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1               67                 58
  CLUS_2               57                 55
  CLUS_3               41                 50
D37V12, binary
                    cls
clus                  0  1
  20Q GAIN MUTATED   90 75
  20Q GAIN WILD-TYPE 88 75
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20Q GAIN MUTATED     90   75
  20Q GAIN WILD-TYPE   88   75
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1               90                 88
  CLUS_2               75                 75

Clustering(38) Variable = 21Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  21Q GAIN MUTATED        5      7      4      2
  21Q GAIN WILD-TYPE     37     45     28     26
D38V1, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1                5                 37
  CLUS_2                7                 45
  CLUS_3                4                 28
  CLUS_4                2                 26
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  21Q GAIN MUTATED        3      8      2      5
  21Q GAIN WILD-TYPE     19     48     21     48
D38V2, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1                3                 19
  CLUS_2                8                 48
  CLUS_3                2                 21
  CLUS_4                5                 48
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q GAIN MUTATED       24     16     16
  21Q GAIN WILD-TYPE    169    146    119
D38V3, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1               24                169
  CLUS_2               16                146
  CLUS_3               16                119
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q GAIN MUTATED       12     11     18
  21Q GAIN WILD-TYPE    130    103     82
D38V4, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1               12                130
  CLUS_2               11                103
  CLUS_3               18                 82
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q GAIN MUTATED        9      6      9
  21Q GAIN WILD-TYPE     51     67     52
D38V5, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1                9                 51
  CLUS_2                6                 67
  CLUS_3                9                 52
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  21Q GAIN MUTATED        7      6      5      6
  21Q GAIN WILD-TYPE     51     41     44     34
D38V6, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1                7                 51
  CLUS_2                6                 41
  CLUS_3                5                 44
  CLUS_4                6                 34
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  21Q GAIN MUTATED       17     15     17      6
  21Q GAIN WILD-TYPE    101    128    126     69
D38V7, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1               17                101
  CLUS_2               15                128
  CLUS_3               17                126
  CLUS_4                6                 69
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q GAIN MUTATED       10     15     30
  21Q GAIN WILD-TYPE     83    125    216
D38V8, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1               10                 83
  CLUS_2               15                125
  CLUS_3               30                216
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  21Q GAIN MUTATED       13     15     12     12
  21Q GAIN WILD-TYPE    132    115    113     52
D38V9, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1               13                132
  CLUS_2               15                115
  CLUS_3               12                113
  CLUS_4               12                 52
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q GAIN MUTATED       10     19     23
  21Q GAIN WILD-TYPE     61    144    207
D38V10, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1               10                 61
  CLUS_2               19                144
  CLUS_3               23                207
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q GAIN MUTATED       12     16      7
  21Q GAIN WILD-TYPE    113     96     84
D38V11, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1               12                113
  CLUS_2               16                 96
  CLUS_3                7                 84
D38V12, binary
                    cls
clus                   0   1
  21Q GAIN MUTATED    19  16
  21Q GAIN WILD-TYPE 159 134
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  21Q GAIN MUTATED     19   16
  21Q GAIN WILD-TYPE  159  134
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1               19                159
  CLUS_2               16                134

Clustering(39) Variable = 22Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  22Q GAIN MUTATED       21     31     10      7
  22Q GAIN WILD-TYPE     21     21     22     21
D39V1, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1               21                 21
  CLUS_2               31                 21
  CLUS_3               10                 22
  CLUS_4                7                 21
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  22Q GAIN MUTATED        6     32     12     19
  22Q GAIN WILD-TYPE     16     24     11     34
D39V2, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1                6                 16
  CLUS_2               32                 24
  CLUS_3               12                 11
  CLUS_4               19                 34
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q GAIN MUTATED       69     85     64
  22Q GAIN WILD-TYPE    124     77     71
D39V3, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1               69                124
  CLUS_2               85                 77
  CLUS_3               64                 71
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q GAIN MUTATED       52     59     48
  22Q GAIN WILD-TYPE     90     55     52
D39V4, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1               52                 90
  CLUS_2               59                 55
  CLUS_3               48                 52
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q GAIN MUTATED       26     32     28
  22Q GAIN WILD-TYPE     34     41     33
D39V5, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1               26                 34
  CLUS_2               32                 41
  CLUS_3               28                 33
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  22Q GAIN MUTATED       19     28     23     16
  22Q GAIN WILD-TYPE     39     19     26     24
D39V6, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1               19                 39
  CLUS_2               28                 19
  CLUS_3               23                 26
  CLUS_4               16                 24
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  22Q GAIN MUTATED       51     81     52     29
  22Q GAIN WILD-TYPE     67     62     91     46
D39V7, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1               51                 67
  CLUS_2               81                 62
  CLUS_3               52                 91
  CLUS_4               29                 46
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q GAIN MUTATED       34     76    103
  22Q GAIN WILD-TYPE     59     64    143
D39V8, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1               34                 59
  CLUS_2               76                 64
  CLUS_3              103                143
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  22Q GAIN MUTATED       55     69     53     31
  22Q GAIN WILD-TYPE     90     61     72     33
D39V9, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1               55                 90
  CLUS_2               69                 61
  CLUS_3               53                 72
  CLUS_4               31                 33
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q GAIN MUTATED       33     81     94
  22Q GAIN WILD-TYPE     38     82    136
D39V10, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1               33                 38
  CLUS_2               81                 82
  CLUS_3               94                136
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q GAIN MUTATED       63     49     32
  22Q GAIN WILD-TYPE     62     63     59
D39V11, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1               63                 62
  CLUS_2               49                 63
  CLUS_3               32                 59
D39V12, binary
                    cls
clus                   0   1
  22Q GAIN MUTATED    75  69
  22Q GAIN WILD-TYPE 103  81
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  22Q GAIN MUTATED     75   69
  22Q GAIN WILD-TYPE  103   81
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1               75                103
  CLUS_2               69                 81

Clustering(40) Variable = XQ GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XQ GAIN MUTATED        8     10      2      5
  XQ GAIN WILD-TYPE     34     42     30     23
D40V1, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1               8                34
  CLUS_2              10                42
  CLUS_3               2                30
  CLUS_4               5                23
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XQ GAIN MUTATED        2     11      4      8
  XQ GAIN WILD-TYPE     20     45     19     45
D40V2, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1               2                20
  CLUS_2              11                45
  CLUS_3               4                19
  CLUS_4               8                45
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ GAIN MUTATED       15     40     22
  XQ GAIN WILD-TYPE    178    122    113
D40V3, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1              15               178
  CLUS_2              40               122
  CLUS_3              22               113
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ GAIN MUTATED       14     28     13
  XQ GAIN WILD-TYPE    128     86     87
D40V4, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1              14               128
  CLUS_2              28                86
  CLUS_3              13                87
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ GAIN MUTATED       10     10      7
  XQ GAIN WILD-TYPE     50     63     54
D40V5, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1              10                50
  CLUS_2              10                63
  CLUS_3               7                54
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XQ GAIN MUTATED        8      6     10      3
  XQ GAIN WILD-TYPE     50     41     39     37
D40V6, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1               8                50
  CLUS_2               6                41
  CLUS_3              10                39
  CLUS_4               3                37
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XQ GAIN MUTATED       13     34     23      6
  XQ GAIN WILD-TYPE    105    109    120     69
D40V7, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1              13               105
  CLUS_2              34               109
  CLUS_3              23               120
  CLUS_4               6                69
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ GAIN MUTATED       16     31     29
  XQ GAIN WILD-TYPE     77    109    217
D40V8, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1              16                77
  CLUS_2              31               109
  CLUS_3              29               217
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XQ GAIN MUTATED       21     32      9     11
  XQ GAIN WILD-TYPE    124     98    116     53
D40V9, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1              21               124
  CLUS_2              32                98
  CLUS_3               9               116
  CLUS_4              11                53
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ GAIN MUTATED       14     30     29
  XQ GAIN WILD-TYPE     57    133    201
D40V10, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1              14                57
  CLUS_2              30               133
  CLUS_3              29               201
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ GAIN MUTATED       29     13     10
  XQ GAIN WILD-TYPE     96     99     81
D40V11, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1              29                96
  CLUS_2              13                99
  CLUS_3              10                81
D40V12, binary
                   cls
clus                  0   1
  XQ GAIN MUTATED    22  30
  XQ GAIN WILD-TYPE 156 120
[1] "tbl2"
                   cls
clus                [,1] [,2]
  XQ GAIN MUTATED     22   30
  XQ GAIN WILD-TYPE  156  120
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1              22               156
  CLUS_2              30               120

Clustering(41) Variable = 1P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1P LOSS MUTATED        8     30      8      3
  1P LOSS WILD-TYPE     34     22     24     25
D41V1, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1               8                34
  CLUS_2              30                22
  CLUS_3               8                24
  CLUS_4               3                25
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1P LOSS MUTATED        7     32      4      6
  1P LOSS WILD-TYPE     15     24     19     47
D41V2, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1               7                15
  CLUS_2              32                24
  CLUS_3               4                19
  CLUS_4               6                47
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P LOSS MUTATED       32     95     20
  1P LOSS WILD-TYPE    161     67    115
D41V3, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1              32               161
  CLUS_2              95                67
  CLUS_3              20               115
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P LOSS MUTATED       20     59     24
  1P LOSS WILD-TYPE    122     55     76
D41V4, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1              20               122
  CLUS_2              59                55
  CLUS_3              24                76
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P LOSS MUTATED       18     20     19
  1P LOSS WILD-TYPE     42     53     42
D41V5, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1              18                42
  CLUS_2              20                53
  CLUS_3              19                42
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1P LOSS MUTATED       14     21     12     10
  1P LOSS WILD-TYPE     44     26     37     30
D41V6, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1              14                44
  CLUS_2              21                26
  CLUS_3              12                37
  CLUS_4              10                30
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1P LOSS MUTATED       21     79     28     17
  1P LOSS WILD-TYPE     97     64    115     58
D41V7, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1              21                97
  CLUS_2              79                64
  CLUS_3              28               115
  CLUS_4              17                58
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P LOSS MUTATED       18     78     49
  1P LOSS WILD-TYPE     75     62    197
D41V8, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1              18                75
  CLUS_2              78                62
  CLUS_3              49               197
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1P LOSS MUTATED       44     41     22     31
  1P LOSS WILD-TYPE    101     89    103     33
D41V9, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1              44               101
  CLUS_2              41                89
  CLUS_3              22               103
  CLUS_4              31                33
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P LOSS MUTATED       37     45     56
  1P LOSS WILD-TYPE     34    118    174
D41V10, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1              37                34
  CLUS_2              45               118
  CLUS_3              56               174
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P LOSS MUTATED       48     26     20
  1P LOSS WILD-TYPE     77     86     71
D41V11, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1              48                77
  CLUS_2              26                86
  CLUS_3              20                71
D41V12, binary
                   cls
clus                  0   1
  1P LOSS MUTATED    36  58
  1P LOSS WILD-TYPE 142  92
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1P LOSS MUTATED     36   58
  1P LOSS WILD-TYPE  142   92
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1              36               142
  CLUS_2              58                92

Clustering(42) Variable = 1Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1Q LOSS MUTATED        3      6      1      3
  1Q LOSS WILD-TYPE     39     46     31     25
D42V1, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1               3                39
  CLUS_2               6                46
  CLUS_3               1                31
  CLUS_4               3                25
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1Q LOSS MUTATED        3      6      2      2
  1Q LOSS WILD-TYPE     19     50     21     51
D42V2, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1               3                19
  CLUS_2               6                50
  CLUS_3               2                21
  CLUS_4               2                51
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q LOSS MUTATED       11     31     15
  1Q LOSS WILD-TYPE    182    131    120
D42V3, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1              11               182
  CLUS_2              31               131
  CLUS_3              15               120
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q LOSS MUTATED       12     20     14
  1Q LOSS WILD-TYPE    130     94     86
D42V4, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1              12               130
  CLUS_2              20                94
  CLUS_3              14                86
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q LOSS MUTATED        7      9      7
  1Q LOSS WILD-TYPE     53     64     54
D42V5, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1               7                53
  CLUS_2               9                64
  CLUS_3               7                54
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1Q LOSS MUTATED        7      8      5      3
  1Q LOSS WILD-TYPE     51     39     44     37
D42V6, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1               7                51
  CLUS_2               8                39
  CLUS_3               5                44
  CLUS_4               3                37
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1Q LOSS MUTATED        9     26     15      5
  1Q LOSS WILD-TYPE    109    117    128     70
D42V7, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1               9               109
  CLUS_2              26               117
  CLUS_3              15               128
  CLUS_4               5                70
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q LOSS MUTATED        9     25     21
  1Q LOSS WILD-TYPE     84    115    225
D42V8, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1               9                84
  CLUS_2              25               115
  CLUS_3              21               225
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1Q LOSS MUTATED       14     20     12     10
  1Q LOSS WILD-TYPE    131    110    113     54
D42V9, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1              14               131
  CLUS_2              20               110
  CLUS_3              12               113
  CLUS_4              10                54
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q LOSS MUTATED       10     24     22
  1Q LOSS WILD-TYPE     61    139    208
D42V10, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1              10                61
  CLUS_2              24               139
  CLUS_3              22               208
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q LOSS MUTATED       19     15     10
  1Q LOSS WILD-TYPE    106     97     81
D42V11, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1              19               106
  CLUS_2              15                97
  CLUS_3              10                81
D42V12, binary
                   cls
clus                  0   1
  1Q LOSS MUTATED    16  28
  1Q LOSS WILD-TYPE 162 122
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1Q LOSS MUTATED     16   28
  1Q LOSS WILD-TYPE  162  122
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1              16               162
  CLUS_2              28               122

Clustering(43) Variable = 2P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2P LOSS MUTATED        3      1      0      4
  2P LOSS WILD-TYPE     39     51     32     24
D43V1, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1               3                39
  CLUS_2               1                51
  CLUS_3               0                32
  CLUS_4               4                24
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2P LOSS MUTATED        3      1      2      2
  2P LOSS WILD-TYPE     19     55     21     51
D43V2, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1               3                19
  CLUS_2               1                55
  CLUS_3               2                21
  CLUS_4               2                51
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P LOSS MUTATED        4      6     11
  2P LOSS WILD-TYPE    189    156    124
D43V3, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1               4               189
  CLUS_2               6               156
  CLUS_3              11               124
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P LOSS MUTATED        5      2      7
  2P LOSS WILD-TYPE    137    112     93
D43V4, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1               5               137
  CLUS_2               2               112
  CLUS_3               7                93
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P LOSS MUTATED        4      3      0
  2P LOSS WILD-TYPE     56     70     61
D43V5, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1               4                56
  CLUS_2               3                70
  CLUS_3               0                61
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2P LOSS MUTATED        5      1      0      1
  2P LOSS WILD-TYPE     53     46     49     39
D43V6, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1               5                53
  CLUS_2               1                46
  CLUS_3               0                49
  CLUS_4               1                39
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2P LOSS MUTATED        5      5      9      2
  2P LOSS WILD-TYPE    113    138    134     73
D43V7, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1               5               113
  CLUS_2               5               138
  CLUS_3               9               134
  CLUS_4               2                73
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P LOSS MUTATED        9      5      7
  2P LOSS WILD-TYPE     84    135    239
D43V8, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1               9                84
  CLUS_2               5               135
  CLUS_3               7               239
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2P LOSS MUTATED       12      6      0      2
  2P LOSS WILD-TYPE    133    124    125     62
D43V9, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1              12               133
  CLUS_2               6               124
  CLUS_3               0               125
  CLUS_4               2                62
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P LOSS MUTATED        2      6     12
  2P LOSS WILD-TYPE     69    157    218
D43V10, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1               2                69
  CLUS_2               6               157
  CLUS_3              12               218
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P LOSS MUTATED        9      1      2
  2P LOSS WILD-TYPE    116    111     89
D43V11, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1               9               116
  CLUS_2               1               111
  CLUS_3               2                89
D43V12, binary
                   cls
clus                  0   1
  2P LOSS MUTATED     2  10
  2P LOSS WILD-TYPE 176 140
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2P LOSS MUTATED      2   10
  2P LOSS WILD-TYPE  176  140
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1               2               176
  CLUS_2              10               140

Clustering(44) Variable = 2Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2Q LOSS MUTATED        4      4      1      4
  2Q LOSS WILD-TYPE     38     48     31     24
D44V1, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1               4                38
  CLUS_2               4                48
  CLUS_3               1                31
  CLUS_4               4                24
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2Q LOSS MUTATED        2      5      3      3
  2Q LOSS WILD-TYPE     20     51     20     50
D44V2, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1               2                20
  CLUS_2               5                51
  CLUS_3               3                20
  CLUS_4               3                50
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2Q LOSS MUTATED       10     16     15
  2Q LOSS WILD-TYPE    183    146    120
D44V3, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1              10               183
  CLUS_2              16               146
  CLUS_3              15               120
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2Q LOSS MUTATED        8     11     10
  2Q LOSS WILD-TYPE    134    103     90
D44V4, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1               8               134
  CLUS_2              11               103
  CLUS_3              10                90
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2Q LOSS MUTATED        5      4      4
  2Q LOSS WILD-TYPE     55     69     57
D44V5, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1               5                55
  CLUS_2               4                69
  CLUS_3               4                57
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2Q LOSS MUTATED        5      5      2      1
  2Q LOSS WILD-TYPE     53     42     47     39
D44V6, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1               5                53
  CLUS_2               5                42
  CLUS_3               2                47
  CLUS_4               1                39
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2Q LOSS MUTATED        8     13     16      3
  2Q LOSS WILD-TYPE    110    130    127     72
D44V7, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1               8               110
  CLUS_2              13               130
  CLUS_3              16               127
  CLUS_4               3                72
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2Q LOSS MUTATED       14     15     11
  2Q LOSS WILD-TYPE     79    125    235
D44V8, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1              14                79
  CLUS_2              15               125
  CLUS_3              11               235
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2Q LOSS MUTATED       19     14      1      6
  2Q LOSS WILD-TYPE    126    116    124     58
D44V9, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1              19               126
  CLUS_2              14               116
  CLUS_3               1               124
  CLUS_4               6                58
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2Q LOSS MUTATED        5     16     19
  2Q LOSS WILD-TYPE     66    147    211
D44V10, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1               5                66
  CLUS_2              16               147
  CLUS_3              19               211
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2Q LOSS MUTATED       18      6      3
  2Q LOSS WILD-TYPE    107    106     88
D44V11, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1              18               107
  CLUS_2               6               106
  CLUS_3               3                88
D44V12, binary
                   cls
clus                  0   1
  2Q LOSS MUTATED     8  19
  2Q LOSS WILD-TYPE 170 131
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2Q LOSS MUTATED      8   19
  2Q LOSS WILD-TYPE  170  131
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1               8               170
  CLUS_2              19               131

Clustering(45) Variable = 3P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3P LOSS MUTATED       26     33     16     18
  3P LOSS WILD-TYPE     16     19     16     10
D45V1, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1              26                16
  CLUS_2              33                19
  CLUS_3              16                16
  CLUS_4              18                10
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3P LOSS MUTATED       13     37     14     29
  3P LOSS WILD-TYPE      9     19      9     24
D45V2, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1              13                 9
  CLUS_2              37                19
  CLUS_3              14                 9
  CLUS_4              29                24
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P LOSS MUTATED      109    108     86
  3P LOSS WILD-TYPE     84     54     49
D45V3, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1             109                84
  CLUS_2             108                54
  CLUS_3              86                49
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P LOSS MUTATED       75     69     76
  3P LOSS WILD-TYPE     67     45     24
D45V4, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1              75                67
  CLUS_2              69                45
  CLUS_3              76                24
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P LOSS MUTATED       37     45     36
  3P LOSS WILD-TYPE     23     28     25
D45V5, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1              37                23
  CLUS_2              45                28
  CLUS_3              36                25
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3P LOSS MUTATED       38     28     32     20
  3P LOSS WILD-TYPE     20     19     17     20
D45V6, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1              38                20
  CLUS_2              28                19
  CLUS_3              32                17
  CLUS_4              20                20
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3P LOSS MUTATED       78     89     92     40
  3P LOSS WILD-TYPE     40     54     51     35
D45V7, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1              78                40
  CLUS_2              89                54
  CLUS_3              92                51
  CLUS_4              40                35
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P LOSS MUTATED       65     88    146
  3P LOSS WILD-TYPE     28     52    100
D45V8, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1              65                28
  CLUS_2              88                52
  CLUS_3             146               100
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3P LOSS MUTATED       89     89     66     41
  3P LOSS WILD-TYPE     56     41     59     23
D45V9, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1              89                56
  CLUS_2              89                41
  CLUS_3              66                59
  CLUS_4              41                23
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P LOSS MUTATED       47    106    132
  3P LOSS WILD-TYPE     24     57     98
D45V10, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1              47                24
  CLUS_2             106                57
  CLUS_3             132                98
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P LOSS MUTATED       87     67     49
  3P LOSS WILD-TYPE     38     45     42
D45V11, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1              87                38
  CLUS_2              67                45
  CLUS_3              49                42
D45V12, binary
                   cls
clus                  0   1
  3P LOSS MUTATED   101 102
  3P LOSS WILD-TYPE  77  48
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3P LOSS MUTATED    101  102
  3P LOSS WILD-TYPE   77   48
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1             101                77
  CLUS_2             102                48

Clustering(46) Variable = 3Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3Q LOSS MUTATED        6      8      6      5
  3Q LOSS WILD-TYPE     36     44     26     23
D46V1, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1               6                36
  CLUS_2               8                44
  CLUS_3               6                26
  CLUS_4               5                23
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3Q LOSS MUTATED        6      9      3      7
  3Q LOSS WILD-TYPE     16     47     20     46
D46V2, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1               6                16
  CLUS_2               9                47
  CLUS_3               3                20
  CLUS_4               7                46
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q LOSS MUTATED       26     28     17
  3Q LOSS WILD-TYPE    167    134    118
D46V3, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1              26               167
  CLUS_2              28               134
  CLUS_3              17               118
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q LOSS MUTATED       16     16     15
  3Q LOSS WILD-TYPE    126     98     85
D46V4, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1              16               126
  CLUS_2              16                98
  CLUS_3              15                85
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q LOSS MUTATED        7     14      8
  3Q LOSS WILD-TYPE     53     59     53
D46V5, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1               7                53
  CLUS_2              14                59
  CLUS_3               8                53
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3Q LOSS MUTATED        7      9      8      5
  3Q LOSS WILD-TYPE     51     38     41     35
D46V6, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1               7                51
  CLUS_2               9                38
  CLUS_3               8                41
  CLUS_4               5                35
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3Q LOSS MUTATED       17     23     21      9
  3Q LOSS WILD-TYPE    101    120    122     66
D46V7, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1              17               101
  CLUS_2              23               120
  CLUS_3              21               122
  CLUS_4               9                66
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q LOSS MUTATED       13     22     35
  3Q LOSS WILD-TYPE     80    118    211
D46V8, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1              13                80
  CLUS_2              22               118
  CLUS_3              35               211
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3Q LOSS MUTATED       23     18     17      8
  3Q LOSS WILD-TYPE    122    112    108     56
D46V9, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1              23               122
  CLUS_2              18               112
  CLUS_3              17               108
  CLUS_4               8                56
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q LOSS MUTATED       10     19     37
  3Q LOSS WILD-TYPE     61    144    193
D46V10, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1              10                61
  CLUS_2              19               144
  CLUS_3              37               193
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q LOSS MUTATED       24     14      7
  3Q LOSS WILD-TYPE    101     98     84
D46V11, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1              24               101
  CLUS_2              14                98
  CLUS_3               7                84
D46V12, binary
                   cls
clus                  0   1
  3Q LOSS MUTATED    18  27
  3Q LOSS WILD-TYPE 160 123
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3Q LOSS MUTATED     18   27
  3Q LOSS WILD-TYPE  160  123
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1              18               160
  CLUS_2              27               123

Clustering(47) Variable = 4P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4P LOSS MUTATED       30     41     12     15
  4P LOSS WILD-TYPE     12     11     20     13
D47V1, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1              30                12
  CLUS_2              41                11
  CLUS_3              12                20
  CLUS_4              15                13
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4P LOSS MUTATED       11     45     15     27
  4P LOSS WILD-TYPE     11     11      8     26
D47V2, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1              11                11
  CLUS_2              45                11
  CLUS_3              15                 8
  CLUS_4              27                26
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P LOSS MUTATED       90    136     81
  4P LOSS WILD-TYPE    103     26     54
D47V3, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1              90               103
  CLUS_2             136                26
  CLUS_3              81                54
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P LOSS MUTATED       64     90     67
  4P LOSS WILD-TYPE     78     24     33
D47V4, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1              64                78
  CLUS_2              90                24
  CLUS_3              67                33
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P LOSS MUTATED       47     48     40
  4P LOSS WILD-TYPE     13     25     21
D47V5, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1              47                13
  CLUS_2              48                25
  CLUS_3              40                21
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4P LOSS MUTATED       40     35     38     22
  4P LOSS WILD-TYPE     18     12     11     18
D47V6, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1              40                18
  CLUS_2              35                12
  CLUS_3              38                11
  CLUS_4              22                18
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4P LOSS MUTATED       77    113     74     38
  4P LOSS WILD-TYPE     41     30     69     37
D47V7, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1              77                41
  CLUS_2             113                30
  CLUS_3              74                69
  CLUS_4              38                37
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P LOSS MUTATED       58    111    133
  4P LOSS WILD-TYPE     35     29    113
D47V8, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1              58                35
  CLUS_2             111                29
  CLUS_3             133               113
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4P LOSS MUTATED       97     92     58     46
  4P LOSS WILD-TYPE     48     38     67     18
D47V9, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1              97                48
  CLUS_2              92                38
  CLUS_3              58                67
  CLUS_4              46                18
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P LOSS MUTATED       49    104    140
  4P LOSS WILD-TYPE     22     59     90
D47V10, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1              49                22
  CLUS_2             104                59
  CLUS_3             140                90
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P LOSS MUTATED       96     60     49
  4P LOSS WILD-TYPE     29     52     42
D47V11, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1              96                29
  CLUS_2              60                52
  CLUS_3              49                42
D47V12, binary
                   cls
clus                  0   1
  4P LOSS MUTATED    92 113
  4P LOSS WILD-TYPE  86  37
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4P LOSS MUTATED     92  113
  4P LOSS WILD-TYPE   86   37
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1              92                86
  CLUS_2             113                37

Clustering(48) Variable = 4Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4Q LOSS MUTATED       26     39     10     16
  4Q LOSS WILD-TYPE     16     13     22     12
D48V1, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1              26                16
  CLUS_2              39                13
  CLUS_3              10                22
  CLUS_4              16                12
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4Q LOSS MUTATED       12     42     15     22
  4Q LOSS WILD-TYPE     10     14      8     31
D48V2, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1              12                10
  CLUS_2              42                14
  CLUS_3              15                 8
  CLUS_4              22                31
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q LOSS MUTATED       91    130     69
  4Q LOSS WILD-TYPE    102     32     66
D48V3, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1              91               102
  CLUS_2             130                32
  CLUS_3              69                66
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q LOSS MUTATED       68     86     57
  4Q LOSS WILD-TYPE     74     28     43
D48V4, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1              68                74
  CLUS_2              86                28
  CLUS_3              57                43
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q LOSS MUTATED       42     42     35
  4Q LOSS WILD-TYPE     18     31     26
D48V5, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1              42                18
  CLUS_2              42                31
  CLUS_3              35                26
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4Q LOSS MUTATED       38     28     33     20
  4Q LOSS WILD-TYPE     20     19     16     20
D48V6, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1              38                20
  CLUS_2              28                19
  CLUS_3              33                16
  CLUS_4              20                20
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4Q LOSS MUTATED       67    109     77     32
  4Q LOSS WILD-TYPE     51     34     66     43
D48V7, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1              67                51
  CLUS_2             109                34
  CLUS_3              77                66
  CLUS_4              32                43
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q LOSS MUTATED       58    105    122
  4Q LOSS WILD-TYPE     35     35    124
D48V8, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1              58                35
  CLUS_2             105                35
  CLUS_3             122               124
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4Q LOSS MUTATED       85     87     60     44
  4Q LOSS WILD-TYPE     60     43     65     20
D48V9, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1              85                60
  CLUS_2              87                43
  CLUS_3              60                65
  CLUS_4              44                20
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q LOSS MUTATED       49    102    125
  4Q LOSS WILD-TYPE     22     61    105
D48V10, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1              49                22
  CLUS_2             102                61
  CLUS_3             125               105
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q LOSS MUTATED       87     61     46
  4Q LOSS WILD-TYPE     38     51     45
D48V11, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1              87                38
  CLUS_2              61                51
  CLUS_3              46                45
D48V12, binary
                   cls
clus                  0   1
  4Q LOSS MUTATED    91 103
  4Q LOSS WILD-TYPE  87  47
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4Q LOSS MUTATED     91  103
  4Q LOSS WILD-TYPE   87   47
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1              91                87
  CLUS_2             103                47

Clustering(49) Variable = 5P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5P LOSS MUTATED        8     10      3      5
  5P LOSS WILD-TYPE     34     42     29     23
D49V1, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1               8                34
  CLUS_2              10                42
  CLUS_3               3                29
  CLUS_4               5                23
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5P LOSS MUTATED        3     11      1     11
  5P LOSS WILD-TYPE     19     45     22     42
D49V2, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1               3                19
  CLUS_2              11                45
  CLUS_3               1                22
  CLUS_4              11                42
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P LOSS MUTATED       21     30     25
  5P LOSS WILD-TYPE    172    132    110
D49V3, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1              21               172
  CLUS_2              30               132
  CLUS_3              25               110
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P LOSS MUTATED       10     18     23
  5P LOSS WILD-TYPE    132     96     77
D49V4, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1              10               132
  CLUS_2              18                96
  CLUS_3              23                77
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P LOSS MUTATED       11      9     12
  5P LOSS WILD-TYPE     49     64     49
D49V5, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1              11                49
  CLUS_2               9                64
  CLUS_3              12                49
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5P LOSS MUTATED        5     13      7      7
  5P LOSS WILD-TYPE     53     34     42     33
D49V6, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1               5                53
  CLUS_2              13                34
  CLUS_3               7                42
  CLUS_4               7                33
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5P LOSS MUTATED       21     27     18      8
  5P LOSS WILD-TYPE     97    116    125     67
D49V7, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1              21                97
  CLUS_2              27               116
  CLUS_3              18               125
  CLUS_4               8                67
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P LOSS MUTATED       13     25     36
  5P LOSS WILD-TYPE     80    115    210
D49V8, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1              13                80
  CLUS_2              25               115
  CLUS_3              36               210
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5P LOSS MUTATED       24     23     12     12
  5P LOSS WILD-TYPE    121    107    113     52
D49V9, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1              24               121
  CLUS_2              23               107
  CLUS_3              12               113
  CLUS_4              12                52
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P LOSS MUTATED       11     27     33
  5P LOSS WILD-TYPE     60    136    197
D49V10, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1              11                60
  CLUS_2              27               136
  CLUS_3              33               197
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P LOSS MUTATED       23     13     13
  5P LOSS WILD-TYPE    102     99     78
D49V11, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1              23               102
  CLUS_2              13                99
  CLUS_3              13                78
D49V12, binary
                   cls
clus                  0   1
  5P LOSS MUTATED    18  31
  5P LOSS WILD-TYPE 160 119
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5P LOSS MUTATED     18   31
  5P LOSS WILD-TYPE  160  119
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1              18               160
  CLUS_2              31               119

Clustering(50) Variable = 5Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5Q LOSS MUTATED       22     37     16     17
  5Q LOSS WILD-TYPE     20     15     16     11
D50V1, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1              22                20
  CLUS_2              37                15
  CLUS_3              16                16
  CLUS_4              17                11
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5Q LOSS MUTATED       12     40     11     29
  5Q LOSS WILD-TYPE     10     16     12     24
D50V2, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1              12                10
  CLUS_2              40                16
  CLUS_3              11                12
  CLUS_4              29                24
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q LOSS MUTATED       93    108     83
  5Q LOSS WILD-TYPE    100     54     52
D50V3, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1              93               100
  CLUS_2             108                54
  CLUS_3              83                52
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q LOSS MUTATED       67     76     59
  5Q LOSS WILD-TYPE     75     38     41
D50V4, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1              67                75
  CLUS_2              76                38
  CLUS_3              59                41
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q LOSS MUTATED       33     36     41
  5Q LOSS WILD-TYPE     27     37     20
D50V5, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1              33                27
  CLUS_2              36                37
  CLUS_3              41                20
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5Q LOSS MUTATED       27     33     25     25
  5Q LOSS WILD-TYPE     31     14     24     15
D50V6, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1              27                31
  CLUS_2              33                14
  CLUS_3              25                24
  CLUS_4              25                15
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5Q LOSS MUTATED       63     99     78     37
  5Q LOSS WILD-TYPE     55     44     65     38
D50V7, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1              63                55
  CLUS_2              99                44
  CLUS_3              78                65
  CLUS_4              37                38
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q LOSS MUTATED       54     96    127
  5Q LOSS WILD-TYPE     39     44    119
D50V8, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1              54                39
  CLUS_2              96                44
  CLUS_3             127               119
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5Q LOSS MUTATED       85     80     58     45
  5Q LOSS WILD-TYPE     60     50     67     19
D50V9, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1              85                60
  CLUS_2              80                50
  CLUS_3              58                67
  CLUS_4              45                19
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q LOSS MUTATED       47    105    116
  5Q LOSS WILD-TYPE     24     58    114
D50V10, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1              47                24
  CLUS_2             105                58
  CLUS_3             116               114
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q LOSS MUTATED       78     56     52
  5Q LOSS WILD-TYPE     47     56     39
D50V11, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1              78                47
  CLUS_2              56                56
  CLUS_3              52                39
D50V12, binary
                   cls
clus                 0  1
  5Q LOSS MUTATED   91 95
  5Q LOSS WILD-TYPE 87 55
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5Q LOSS MUTATED     91   95
  5Q LOSS WILD-TYPE   87   55
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1              91                87
  CLUS_2              95                55

Clustering(51) Variable = 6P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6P LOSS MUTATED        6     18      5      3
  6P LOSS WILD-TYPE     36     34     27     25
D51V1, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1               6                36
  CLUS_2              18                34
  CLUS_3               5                27
  CLUS_4               3                25
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6P LOSS MUTATED        2     19      1     10
  6P LOSS WILD-TYPE     20     37     22     43
D51V2, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1               2                20
  CLUS_2              19                37
  CLUS_3               1                22
  CLUS_4              10                43
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P LOSS MUTATED       31     54     24
  6P LOSS WILD-TYPE    162    108    111
D51V3, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1              31               162
  CLUS_2              54               108
  CLUS_3              24               111
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P LOSS MUTATED       20     42     20
  6P LOSS WILD-TYPE    122     72     80
D51V4, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1              20               122
  CLUS_2              42                72
  CLUS_3              20                80
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P LOSS MUTATED       14     17      7
  6P LOSS WILD-TYPE     46     56     54
D51V5, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1              14                46
  CLUS_2              17                56
  CLUS_3               7                54
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6P LOSS MUTATED       13      4     12      9
  6P LOSS WILD-TYPE     45     43     37     31
D51V6, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1              13                45
  CLUS_2               4                43
  CLUS_3              12                37
  CLUS_4               9                31
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6P LOSS MUTATED       20     54     20     13
  6P LOSS WILD-TYPE     98     89    123     62
D51V7, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1              20                98
  CLUS_2              54                89
  CLUS_3              20               123
  CLUS_4              13                62
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P LOSS MUTATED       12     54     41
  6P LOSS WILD-TYPE     81     86    205
D51V8, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1              12                81
  CLUS_2              54                86
  CLUS_3              41               205
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6P LOSS MUTATED       32     33     21     17
  6P LOSS WILD-TYPE    113     97    104     47
D51V9, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1              32               113
  CLUS_2              33                97
  CLUS_3              21               104
  CLUS_4              17                47
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P LOSS MUTATED       22     33     48
  6P LOSS WILD-TYPE     49    130    182
D51V10, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1              22                49
  CLUS_2              33               130
  CLUS_3              48               182
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P LOSS MUTATED       38     24     11
  6P LOSS WILD-TYPE     87     88     80
D51V11, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1              38                87
  CLUS_2              24                88
  CLUS_3              11                80
D51V12, binary
                   cls
clus                  0   1
  6P LOSS MUTATED    31  42
  6P LOSS WILD-TYPE 147 108
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6P LOSS MUTATED     31   42
  6P LOSS WILD-TYPE  147  108
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1              31               147
  CLUS_2              42               108

Clustering(52) Variable = 6Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6Q LOSS MUTATED        6     21      4      4
  6Q LOSS WILD-TYPE     36     31     28     24
D52V1, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1               6                36
  CLUS_2              21                31
  CLUS_3               4                28
  CLUS_4               4                24
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6Q LOSS MUTATED        3     22      3      7
  6Q LOSS WILD-TYPE     19     34     20     46
D52V2, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1               3                19
  CLUS_2              22                34
  CLUS_3               3                20
  CLUS_4               7                46
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q LOSS MUTATED       33     52     24
  6Q LOSS WILD-TYPE    160    110    111
D52V3, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1              33               160
  CLUS_2              52               110
  CLUS_3              24               111
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q LOSS MUTATED       22     40     20
  6Q LOSS WILD-TYPE    120     74     80
D52V4, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1              22               120
  CLUS_2              40                74
  CLUS_3              20                80
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q LOSS MUTATED       16     14     12
  6Q LOSS WILD-TYPE     44     59     49
D52V5, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1              16                44
  CLUS_2              14                59
  CLUS_3              12                49
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6Q LOSS MUTATED       16      7     12      7
  6Q LOSS WILD-TYPE     42     40     37     33
D52V6, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1              16                42
  CLUS_2               7                40
  CLUS_3              12                37
  CLUS_4               7                33
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6Q LOSS MUTATED       21     49     23     15
  6Q LOSS WILD-TYPE     97     94    120     60
D52V7, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1              21                97
  CLUS_2              49                94
  CLUS_3              23               120
  CLUS_4              15                60
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q LOSS MUTATED       15     47     46
  6Q LOSS WILD-TYPE     78     93    200
D52V8, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1              15                78
  CLUS_2              47                93
  CLUS_3              46               200
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6Q LOSS MUTATED       35     35     19     13
  6Q LOSS WILD-TYPE    110     95    106     51
D52V9, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1              35               110
  CLUS_2              35                95
  CLUS_3              19               106
  CLUS_4              13                51
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q LOSS MUTATED       21     34     47
  6Q LOSS WILD-TYPE     50    129    183
D52V10, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1              21                50
  CLUS_2              34               129
  CLUS_3              47               183
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q LOSS MUTATED       34     22     15
  6Q LOSS WILD-TYPE     91     90     76
D52V11, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1              34                91
  CLUS_2              22                90
  CLUS_3              15                76
D52V12, binary
                   cls
clus                  0   1
  6Q LOSS MUTATED    31  40
  6Q LOSS WILD-TYPE 147 110
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6Q LOSS MUTATED     31   40
  6Q LOSS WILD-TYPE  147  110
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1              31               147
  CLUS_2              40               110

Clustering(53) Variable = 7P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7P LOSS MUTATED        5      6      3      6
  7P LOSS WILD-TYPE     37     46     29     22
D53V1, multiclass
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  CLUS_1               5                37
  CLUS_2               6                46
  CLUS_3               3                29
  CLUS_4               6                22
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7P LOSS MUTATED        5      7      3      5
  7P LOSS WILD-TYPE     17     49     20     48
D53V2, multiclass
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  CLUS_1               5                17
  CLUS_2               7                49
  CLUS_3               3                20
  CLUS_4               5                48
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7P LOSS MUTATED       13     17     28
  7P LOSS WILD-TYPE    180    145    107
D53V3, multiclass
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  CLUS_1              13               180
  CLUS_2              17               145
  CLUS_3              28               107
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7P LOSS MUTATED       12     14     15
  7P LOSS WILD-TYPE    130    100     85
D53V4, multiclass
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  CLUS_1              12               130
  CLUS_2              14               100
  CLUS_3              15                85
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7P LOSS MUTATED        9     10      6
  7P LOSS WILD-TYPE     51     63     55
D53V5, multiclass
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  CLUS_1               9                51
  CLUS_2              10                63
  CLUS_3               6                55
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7P LOSS MUTATED        9      7      8      1
  7P LOSS WILD-TYPE     49     40     41     39
D53V6, multiclass
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  CLUS_1               9                49
  CLUS_2               7                40
  CLUS_3               8                41
  CLUS_4               1                39
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7P LOSS MUTATED       12     13     24      9
  7P LOSS WILD-TYPE    106    130    119     66
D53V7, multiclass
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  CLUS_1              12               106
  CLUS_2              13               130
  CLUS_3              24               119
  CLUS_4               9                66
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7P LOSS MUTATED       18     12     28
  7P LOSS WILD-TYPE     75    128    218
D53V8, multiclass
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  CLUS_1              18                75
  CLUS_2              12               128
  CLUS_3              28               218
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7P LOSS MUTATED       20     17     10      6
  7P LOSS WILD-TYPE    125    113    115     58
D53V9, multiclass
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  CLUS_1              20               125
  CLUS_2              17               113
  CLUS_3              10               115
  CLUS_4               6                58
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7P LOSS MUTATED        4     23     26
  7P LOSS WILD-TYPE     67    140    204
D53V10, multiclass
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  CLUS_1               4                67
  CLUS_2              23               140
  CLUS_3              26               204
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7P LOSS MUTATED       15     11     11
  7P LOSS WILD-TYPE    110    101     80
D53V11, multiclass
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  CLUS_1              15               110
  CLUS_2              11               101
  CLUS_3              11                80
D53V12, binary
                   cls
clus                  0   1
  7P LOSS MUTATED    18  19
  7P LOSS WILD-TYPE 160 131
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7P LOSS MUTATED     18   19
  7P LOSS WILD-TYPE  160  131
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  CLUS_1              18               160
  CLUS_2              19               131

Clustering(54) Variable = 7Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7Q LOSS MUTATED        6      2      4      5
  7Q LOSS WILD-TYPE     36     50     28     23
D54V1, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1               6                36
  CLUS_2               2                50
  CLUS_3               4                28
  CLUS_4               5                23
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7Q LOSS MUTATED        6      2      4      5
  7Q LOSS WILD-TYPE     16     54     19     48
D54V2, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1               6                16
  CLUS_2               2                54
  CLUS_3               4                19
  CLUS_4               5                48
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q LOSS MUTATED       20     10     21
  7Q LOSS WILD-TYPE    173    152    114
D54V3, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1              20               173
  CLUS_2              10               152
  CLUS_3              21               114
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q LOSS MUTATED       18      7     10
  7Q LOSS WILD-TYPE    124    107     90
D54V4, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1              18               124
  CLUS_2               7               107
  CLUS_3              10                90
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q LOSS MUTATED        7      7      6
  7Q LOSS WILD-TYPE     53     66     55
D54V5, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1               7                53
  CLUS_2               7                66
  CLUS_3               6                55
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7Q LOSS MUTATED       10      3      6      1
  7Q LOSS WILD-TYPE     48     44     43     39
D54V6, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1              10                48
  CLUS_2               3                44
  CLUS_3               6                43
  CLUS_4               1                39
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7Q LOSS MUTATED       13      5     28      5
  7Q LOSS WILD-TYPE    105    138    115     70
D54V7, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1              13               105
  CLUS_2               5               138
  CLUS_3              28               115
  CLUS_4               5                70
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q LOSS MUTATED       20      5     26
  7Q LOSS WILD-TYPE     73    135    220
D54V8, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1              20                73
  CLUS_2               5               135
  CLUS_3              26               220
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7Q LOSS MUTATED       18     18      9      2
  7Q LOSS WILD-TYPE    127    112    116     62
D54V9, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1              18               127
  CLUS_2              18               112
  CLUS_3               9               116
  CLUS_4               2                62
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q LOSS MUTATED        3     17     27
  7Q LOSS WILD-TYPE     68    146    203
D54V10, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1               3                68
  CLUS_2              17               146
  CLUS_3              27               203
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q LOSS MUTATED       13     13      8
  7Q LOSS WILD-TYPE    112     99     83
D54V11, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1              13               112
  CLUS_2              13                99
  CLUS_3               8                83
D54V12, binary
                   cls
clus                  0   1
  7Q LOSS MUTATED    21  13
  7Q LOSS WILD-TYPE 157 137
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7Q LOSS MUTATED     21   13
  7Q LOSS WILD-TYPE  157  137
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1              21               157
  CLUS_2              13               137

Clustering(55) Variable = 8P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8P LOSS MUTATED       18     26     14     13
  8P LOSS WILD-TYPE     24     26     18     15
D55V1, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1              18                24
  CLUS_2              26                26
  CLUS_3              14                18
  CLUS_4              13                15
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8P LOSS MUTATED       10     27     11     23
  8P LOSS WILD-TYPE     12     29     12     30
D55V2, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1              10                12
  CLUS_2              27                29
  CLUS_3              11                12
  CLUS_4              23                30
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P LOSS MUTATED       81     84     72
  8P LOSS WILD-TYPE    112     78     63
D55V3, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1              81               112
  CLUS_2              84                78
  CLUS_3              72                63
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P LOSS MUTATED       56     70     51
  8P LOSS WILD-TYPE     86     44     49
D55V4, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1              56                86
  CLUS_2              70                44
  CLUS_3              51                49
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P LOSS MUTATED       30     40     23
  8P LOSS WILD-TYPE     30     33     38
D55V5, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1              30                30
  CLUS_2              40                33
  CLUS_3              23                38
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8P LOSS MUTATED       28     21     29     15
  8P LOSS WILD-TYPE     30     26     20     25
D55V6, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1              28                30
  CLUS_2              21                26
  CLUS_3              29                20
  CLUS_4              15                25
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8P LOSS MUTATED       58     79     66     30
  8P LOSS WILD-TYPE     60     64     77     45
D55V7, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1              58                60
  CLUS_2              79                64
  CLUS_3              66                77
  CLUS_4              30                45
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P LOSS MUTATED       41     82    110
  8P LOSS WILD-TYPE     52     58    136
D55V8, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1              41                52
  CLUS_2              82                58
  CLUS_3             110               136
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8P LOSS MUTATED       80     69     49     29
  8P LOSS WILD-TYPE     65     61     76     35
D55V9, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1              80                65
  CLUS_2              69                61
  CLUS_3              49                76
  CLUS_4              29                35
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P LOSS MUTATED       33     80    114
  8P LOSS WILD-TYPE     38     83    116
D55V10, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1              33                38
  CLUS_2              80                83
  CLUS_3             114               116
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P LOSS MUTATED       65     57     39
  8P LOSS WILD-TYPE     60     55     52
D55V11, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1              65                60
  CLUS_2              57                55
  CLUS_3              39                52
D55V12, binary
                   cls
clus                 0  1
  8P LOSS MUTATED   81 80
  8P LOSS WILD-TYPE 97 70
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8P LOSS MUTATED     81   80
  8P LOSS WILD-TYPE   97   70
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1              81                97
  CLUS_2              80                70

Clustering(56) Variable = 8Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8Q LOSS MUTATED        1      5      1      3
  8Q LOSS WILD-TYPE     41     47     31     25
D56V1, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1               1                41
  CLUS_2               5                47
  CLUS_3               1                31
  CLUS_4               3                25
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8Q LOSS MUTATED        3      5      1      1
  8Q LOSS WILD-TYPE     19     51     22     52
D56V2, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1               3                19
  CLUS_2               5                51
  CLUS_3               1                22
  CLUS_4               1                52
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q LOSS MUTATED       15     21     13
  8Q LOSS WILD-TYPE    178    141    122
D56V3, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1              15               178
  CLUS_2              21               141
  CLUS_3              13               122
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q LOSS MUTATED        9     23     10
  8Q LOSS WILD-TYPE    133     91     90
D56V4, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1               9               133
  CLUS_2              23                91
  CLUS_3              10                90
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q LOSS MUTATED       10      8      2
  8Q LOSS WILD-TYPE     50     65     59
D56V5, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1              10                50
  CLUS_2               8                65
  CLUS_3               2                59
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8Q LOSS MUTATED        6      6      6      2
  8Q LOSS WILD-TYPE     52     41     43     38
D56V6, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1               6                52
  CLUS_2               6                41
  CLUS_3               6                43
  CLUS_4               2                38
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8Q LOSS MUTATED        9     21     12      6
  8Q LOSS WILD-TYPE    109    122    131     69
D56V7, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1               9               109
  CLUS_2              21               122
  CLUS_3              12               131
  CLUS_4               6                69
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q LOSS MUTATED        8     21     19
  8Q LOSS WILD-TYPE     85    119    227
D56V8, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1               8                85
  CLUS_2              21               119
  CLUS_3              19               227
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8Q LOSS MUTATED       11     17     12      8
  8Q LOSS WILD-TYPE    134    113    113     56
D56V9, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1              11               134
  CLUS_2              17               113
  CLUS_3              12               113
  CLUS_4               8                56
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q LOSS MUTATED       13     14     21
  8Q LOSS WILD-TYPE     58    149    209
D56V10, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1              13                58
  CLUS_2              14               149
  CLUS_3              21               209
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q LOSS MUTATED       16     12      9
  8Q LOSS WILD-TYPE    109    100     82
D56V11, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1              16               109
  CLUS_2              12               100
  CLUS_3               9                82
D56V12, binary
                   cls
clus                  0   1
  8Q LOSS MUTATED    17  20
  8Q LOSS WILD-TYPE 161 130
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8Q LOSS MUTATED     17   20
  8Q LOSS WILD-TYPE  161  130
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1              17               161
  CLUS_2              20               130

Clustering(57) Variable = 9P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9P LOSS MUTATED       35     27     19     15
  9P LOSS WILD-TYPE      7     25     13     13
D57V1, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1              35                 7
  CLUS_2              27                25
  CLUS_3              19                13
  CLUS_4              15                13
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9P LOSS MUTATED       10     28     20     38
  9P LOSS WILD-TYPE     12     28      3     15
D57V2, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1              10                12
  CLUS_2              28                28
  CLUS_3              20                 3
  CLUS_4              38                15
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P LOSS MUTATED      109     89    106
  9P LOSS WILD-TYPE     84     73     29
D57V3, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1             109                84
  CLUS_2              89                73
  CLUS_3             106                29
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P LOSS MUTATED       84     63     73
  9P LOSS WILD-TYPE     58     51     27
D57V4, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1              84                58
  CLUS_2              63                51
  CLUS_3              73                27
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P LOSS MUTATED       32     50     37
  9P LOSS WILD-TYPE     28     23     24
D57V5, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1              32                28
  CLUS_2              50                23
  CLUS_3              37                24
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9P LOSS MUTATED       28     28     35     28
  9P LOSS WILD-TYPE     30     19     14     12
D57V6, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1              28                30
  CLUS_2              28                19
  CLUS_3              35                14
  CLUS_4              28                12
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9P LOSS MUTATED       91     68     99     38
  9P LOSS WILD-TYPE     27     75     44     37
D57V7, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1              91                27
  CLUS_2              68                75
  CLUS_3              99                44
  CLUS_4              38                37
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P LOSS MUTATED       65     67    164
  9P LOSS WILD-TYPE     28     73     82
D57V8, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1              65                28
  CLUS_2              67                73
  CLUS_3             164                82
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9P LOSS MUTATED       86     93     73     35
  9P LOSS WILD-TYPE     59     37     52     29
D57V9, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1              86                59
  CLUS_2              93                37
  CLUS_3              73                52
  CLUS_4              35                29
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P LOSS MUTATED       35    114    138
  9P LOSS WILD-TYPE     36     49     92
D57V10, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1              35                36
  CLUS_2             114                49
  CLUS_3             138                92
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P LOSS MUTATED       76     77     51
  9P LOSS WILD-TYPE     49     35     40
D57V11, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1              76                49
  CLUS_2              77                35
  CLUS_3              51                40
D57V12, binary
                   cls
clus                  0   1
  9P LOSS MUTATED   114  90
  9P LOSS WILD-TYPE  64  60
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9P LOSS MUTATED    114   90
  9P LOSS WILD-TYPE   64   60
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1             114                64
  CLUS_2              90                60

Clustering(58) Variable = 9Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9Q LOSS MUTATED       28     11     21     13
  9Q LOSS WILD-TYPE     14     41     11     15
D58V1, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1              28                14
  CLUS_2              11                41
  CLUS_3              21                11
  CLUS_4              13                15
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9Q LOSS MUTATED       12     12     17     32
  9Q LOSS WILD-TYPE     10     44      6     21
D58V2, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1              12                10
  CLUS_2              12                44
  CLUS_3              17                 6
  CLUS_4              32                21
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q LOSS MUTATED      100     39    100
  9Q LOSS WILD-TYPE     93    123     35
D58V3, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1             100                93
  CLUS_2              39               123
  CLUS_3             100                35
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q LOSS MUTATED       81     29     65
  9Q LOSS WILD-TYPE     61     85     35
D58V4, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1              81                61
  CLUS_2              29                85
  CLUS_3              65                35
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q LOSS MUTATED       23     40     28
  9Q LOSS WILD-TYPE     37     33     33
D58V5, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1              23                37
  CLUS_2              40                33
  CLUS_3              28                33
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9Q LOSS MUTATED       21     19     32     19
  9Q LOSS WILD-TYPE     37     28     17     21
D58V6, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1              21                37
  CLUS_2              19                28
  CLUS_3              32                17
  CLUS_4              19                21
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9Q LOSS MUTATED       81     24     88     40
  9Q LOSS WILD-TYPE     37    119     55     35
D58V7, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1              81                37
  CLUS_2              24               119
  CLUS_3              88                55
  CLUS_4              40                35
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q LOSS MUTATED       56     25    152
  9Q LOSS WILD-TYPE     37    115     94
D58V8, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1              56                37
  CLUS_2              25               115
  CLUS_3             152                94
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9Q LOSS MUTATED       62     80     71     12
  9Q LOSS WILD-TYPE     83     50     54     52
D58V9, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1              62                83
  CLUS_2              80                50
  CLUS_3              71                54
  CLUS_4              12                52
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q LOSS MUTATED       13    104    108
  9Q LOSS WILD-TYPE     58     59    122
D58V10, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1              13                58
  CLUS_2             104                59
  CLUS_3             108               122
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q LOSS MUTATED       54     72     37
  9Q LOSS WILD-TYPE     71     40     54
D58V11, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1              54                71
  CLUS_2              72                40
  CLUS_3              37                54
D58V12, binary
                   cls
clus                  0   1
  9Q LOSS MUTATED   102  61
  9Q LOSS WILD-TYPE  76  89
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9Q LOSS MUTATED    102   61
  9Q LOSS WILD-TYPE   76   89
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1             102                76
  CLUS_2              61                89

Clustering(59) Variable = 10P LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10P LOSS MUTATED       15     29     12     12
  10P LOSS WILD-TYPE     27     23     20     16
D59V1, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1               15                 27
  CLUS_2               29                 23
  CLUS_3               12                 20
  CLUS_4               12                 16
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10P LOSS MUTATED        7     30     10     21
  10P LOSS WILD-TYPE     15     26     13     32
D59V2, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1                7                 15
  CLUS_2               30                 26
  CLUS_3               10                 13
  CLUS_4               21                 32
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P LOSS MUTATED       59     92     59
  10P LOSS WILD-TYPE    134     70     76
D59V3, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1               59                134
  CLUS_2               92                 70
  CLUS_3               59                 76
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P LOSS MUTATED       40     73     37
  10P LOSS WILD-TYPE    102     41     63
D59V4, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1               40                102
  CLUS_2               73                 41
  CLUS_3               37                 63
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P LOSS MUTATED       23     26     28
  10P LOSS WILD-TYPE     37     47     33
D59V5, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1               23                 37
  CLUS_2               26                 47
  CLUS_3               28                 33
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10P LOSS MUTATED       21     24     16     16
  10P LOSS WILD-TYPE     37     23     33     24
D59V6, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1               21                 37
  CLUS_2               24                 23
  CLUS_3               16                 33
  CLUS_4               16                 24
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10P LOSS MUTATED       43     88     49     24
  10P LOSS WILD-TYPE     75     55     94     51
D59V7, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1               43                 75
  CLUS_2               88                 55
  CLUS_3               49                 94
  CLUS_4               24                 51
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P LOSS MUTATED       35     88     81
  10P LOSS WILD-TYPE     58     52    165
D59V8, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1               35                 58
  CLUS_2               88                 52
  CLUS_3               81                165
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10P LOSS MUTATED       61     63     36     40
  10P LOSS WILD-TYPE     84     67     89     24
D59V9, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1               61                 84
  CLUS_2               63                 67
  CLUS_3               36                 89
  CLUS_4               40                 24
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P LOSS MUTATED       48     70     82
  10P LOSS WILD-TYPE     23     93    148
D59V10, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1               48                 23
  CLUS_2               70                 93
  CLUS_3               82                148
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P LOSS MUTATED       69     38     30
  10P LOSS WILD-TYPE     56     74     61
D59V11, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1               69                 56
  CLUS_2               38                 74
  CLUS_3               30                 61
D59V12, binary
                    cls
clus                   0   1
  10P LOSS MUTATED    63  74
  10P LOSS WILD-TYPE 115  76
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10P LOSS MUTATED     63   74
  10P LOSS WILD-TYPE  115   76
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1               63                115
  CLUS_2               74                 76

Clustering(60) Variable = 10Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10Q LOSS MUTATED       13     34     12      8
  10Q LOSS WILD-TYPE     29     18     20     20
D60V1, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1               13                 29
  CLUS_2               34                 18
  CLUS_3               12                 20
  CLUS_4                8                 20
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10Q LOSS MUTATED        7     36      5     19
  10Q LOSS WILD-TYPE     15     20     18     34
D60V2, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1                7                 15
  CLUS_2               36                 20
  CLUS_3                5                 18
  CLUS_4               19                 34
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q LOSS MUTATED       64     98     61
  10Q LOSS WILD-TYPE    129     64     74
D60V3, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1               64                129
  CLUS_2               98                 64
  CLUS_3               61                 74
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q LOSS MUTATED       44     74     45
  10Q LOSS WILD-TYPE     98     40     55
D60V4, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1               44                 98
  CLUS_2               74                 40
  CLUS_3               45                 55
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q LOSS MUTATED       27     24     31
  10Q LOSS WILD-TYPE     33     49     30
D60V5, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1               27                 33
  CLUS_2               24                 49
  CLUS_3               31                 30
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10Q LOSS MUTATED       23     27     16     16
  10Q LOSS WILD-TYPE     35     20     33     24
D60V6, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1               23                 35
  CLUS_2               27                 20
  CLUS_3               16                 33
  CLUS_4               16                 24
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10Q LOSS MUTATED       47     96     51     23
  10Q LOSS WILD-TYPE     71     47     92     52
D60V7, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1               47                 71
  CLUS_2               96                 47
  CLUS_3               51                 92
  CLUS_4               23                 52
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q LOSS MUTATED       38     95     84
  10Q LOSS WILD-TYPE     55     45    162
D60V8, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1               38                 55
  CLUS_2               95                 45
  CLUS_3               84                162
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10Q LOSS MUTATED       58     68     44     42
  10Q LOSS WILD-TYPE     87     62     81     22
D60V9, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1               58                 87
  CLUS_2               68                 62
  CLUS_3               44                 81
  CLUS_4               42                 22
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q LOSS MUTATED       50     75     87
  10Q LOSS WILD-TYPE     21     88    143
D60V10, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1               50                 21
  CLUS_2               75                 88
  CLUS_3               87                143
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q LOSS MUTATED       74     40     36
  10Q LOSS WILD-TYPE     51     72     55
D60V11, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1               74                 51
  CLUS_2               40                 72
  CLUS_3               36                 55
D60V12, binary
                    cls
clus                   0   1
  10Q LOSS MUTATED    71  79
  10Q LOSS WILD-TYPE 107  71
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10Q LOSS MUTATED     71   79
  10Q LOSS WILD-TYPE  107   71
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1               71                107
  CLUS_2               79                 71

Clustering(61) Variable = 11P LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11P LOSS MUTATED       19     15      9     12
  11P LOSS WILD-TYPE     23     37     23     16
D61V1, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1               19                 23
  CLUS_2               15                 37
  CLUS_3                9                 23
  CLUS_4               12                 16
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11P LOSS MUTATED       12     16     11     16
  11P LOSS WILD-TYPE     10     40     12     37
D61V2, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1               12                 10
  CLUS_2               16                 40
  CLUS_3               11                 12
  CLUS_4               16                 37
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P LOSS MUTATED       50     59     59
  11P LOSS WILD-TYPE    143    103     76
D61V3, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1               50                143
  CLUS_2               59                103
  CLUS_3               59                 76
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P LOSS MUTATED       34     41     44
  11P LOSS WILD-TYPE    108     73     56
D61V4, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1               34                108
  CLUS_2               41                 73
  CLUS_3               44                 56
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P LOSS MUTATED       21     30     15
  11P LOSS WILD-TYPE     39     43     46
D61V5, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1               21                 39
  CLUS_2               30                 43
  CLUS_3               15                 46
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11P LOSS MUTATED       22     10     27      7
  11P LOSS WILD-TYPE     36     37     22     33
D61V6, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1               22                 36
  CLUS_2               10                 37
  CLUS_3               27                 22
  CLUS_4                7                 33
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11P LOSS MUTATED       46     43     56     21
  11P LOSS WILD-TYPE     72    100     87     54
D61V7, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1               46                 72
  CLUS_2               43                100
  CLUS_3               56                 87
  CLUS_4               21                 54
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P LOSS MUTATED       41     43     82
  11P LOSS WILD-TYPE     52     97    164
D61V8, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1               41                 52
  CLUS_2               43                 97
  CLUS_3               82                164
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11P LOSS MUTATED       55     48     37     19
  11P LOSS WILD-TYPE     90     82     88     45
D61V9, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1               55                 90
  CLUS_2               48                 82
  CLUS_3               37                 88
  CLUS_4               19                 45
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P LOSS MUTATED       21     49     89
  11P LOSS WILD-TYPE     50    114    141
D61V10, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1               21                 50
  CLUS_2               49                114
  CLUS_3               89                141
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P LOSS MUTATED       50     37     24
  11P LOSS WILD-TYPE     75     75     67
D61V11, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1               50                 75
  CLUS_2               37                 75
  CLUS_3               24                 67
D61V12, binary
                    cls
clus                   0   1
  11P LOSS MUTATED    53  58
  11P LOSS WILD-TYPE 125  92
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11P LOSS MUTATED     53   58
  11P LOSS WILD-TYPE  125   92
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1               53                125
  CLUS_2               58                 92

Clustering(62) Variable = 11Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11Q LOSS MUTATED       11     13      8      8
  11Q LOSS WILD-TYPE     31     39     24     20
D62V1, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1               11                 31
  CLUS_2               13                 39
  CLUS_3                8                 24
  CLUS_4                8                 20
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11Q LOSS MUTATED        5     14      7     14
  11Q LOSS WILD-TYPE     17     42     16     39
D62V2, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1                5                 17
  CLUS_2               14                 42
  CLUS_3                7                 16
  CLUS_4               14                 39
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q LOSS MUTATED       38     55     46
  11Q LOSS WILD-TYPE    155    107     89
D62V3, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1               38                155
  CLUS_2               55                107
  CLUS_3               46                 89
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q LOSS MUTATED       27     40     38
  11Q LOSS WILD-TYPE    115     74     62
D62V4, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1               27                115
  CLUS_2               40                 74
  CLUS_3               38                 62
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q LOSS MUTATED       16     20     12
  11Q LOSS WILD-TYPE     44     53     49
D62V5, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1               16                 44
  CLUS_2               20                 53
  CLUS_3               12                 49
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11Q LOSS MUTATED       14     10     15      9
  11Q LOSS WILD-TYPE     44     37     34     31
D62V6, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1               14                 44
  CLUS_2               10                 37
  CLUS_3               15                 34
  CLUS_4                9                 31
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11Q LOSS MUTATED       33     43     46     15
  11Q LOSS WILD-TYPE     85    100     97     60
D62V7, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1               33                 85
  CLUS_2               43                100
  CLUS_3               46                 97
  CLUS_4               15                 60
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q LOSS MUTATED       33     42     62
  11Q LOSS WILD-TYPE     60     98    184
D62V8, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1               33                 60
  CLUS_2               42                 98
  CLUS_3               62                184
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11Q LOSS MUTATED       34     51     30     19
  11Q LOSS WILD-TYPE    111     79     95     45
D62V9, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1               34                111
  CLUS_2               51                 79
  CLUS_3               30                 95
  CLUS_4               19                 45
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q LOSS MUTATED       20     46     68
  11Q LOSS WILD-TYPE     51    117    162
D62V10, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1               20                 51
  CLUS_2               46                117
  CLUS_3               68                162
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q LOSS MUTATED       44     30     23
  11Q LOSS WILD-TYPE     81     82     68
D62V11, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1               44                 81
  CLUS_2               30                 82
  CLUS_3               23                 68
D62V12, binary
                    cls
clus                   0   1
  11Q LOSS MUTATED    45  52
  11Q LOSS WILD-TYPE 133  98
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11Q LOSS MUTATED     45   52
  11Q LOSS WILD-TYPE  133   98
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1               45                133
  CLUS_2               52                 98

Clustering(63) Variable = 12P LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12P LOSS MUTATED        0      3      3      5
  12P LOSS WILD-TYPE     42     49     29     23
D63V1, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1                0                 42
  CLUS_2                3                 49
  CLUS_3                3                 29
  CLUS_4                5                 23
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12P LOSS MUTATED        5      3      0      3
  12P LOSS WILD-TYPE     17     53     23     50
D63V2, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1                5                 17
  CLUS_2                3                 53
  CLUS_3                0                 23
  CLUS_4                3                 50
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12P LOSS MUTATED       19     12      7
  12P LOSS WILD-TYPE    174    150    128
D63V3, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1               19                174
  CLUS_2               12                150
  CLUS_3                7                128
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12P LOSS MUTATED       10     10      8
  12P LOSS WILD-TYPE    132    104     92
D63V4, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1               10                132
  CLUS_2               10                104
  CLUS_3                8                 92
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12P LOSS MUTATED        2      2      7
  12P LOSS WILD-TYPE     58     71     54
D63V5, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1                2                 58
  CLUS_2                2                 71
  CLUS_3                7                 54
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12P LOSS MUTATED        3      4      2      2
  12P LOSS WILD-TYPE     55     43     47     38
D63V6, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1                3                 55
  CLUS_2                4                 43
  CLUS_3                2                 47
  CLUS_4                2                 38
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12P LOSS MUTATED        8     11     12      6
  12P LOSS WILD-TYPE    110    132    131     69
D63V7, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1                8                110
  CLUS_2               11                132
  CLUS_3               12                131
  CLUS_4                6                 69
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12P LOSS MUTATED        9     14     14
  12P LOSS WILD-TYPE     84    126    232
D63V8, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1                9                 84
  CLUS_2               14                126
  CLUS_3               14                232
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12P LOSS MUTATED        9     16      6      4
  12P LOSS WILD-TYPE    136    114    119     60
D63V9, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1                9                136
  CLUS_2               16                114
  CLUS_3                6                119
  CLUS_4                4                 60
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12P LOSS MUTATED        2     19     14
  12P LOSS WILD-TYPE     69    144    216
D63V10, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1                2                 69
  CLUS_2               19                144
  CLUS_3               14                216
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12P LOSS MUTATED       13      8      6
  12P LOSS WILD-TYPE    112    104     85
D63V11, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1               13                112
  CLUS_2                8                104
  CLUS_3                6                 85
D63V12, binary
                    cls
clus                   0   1
  12P LOSS MUTATED    11  16
  12P LOSS WILD-TYPE 167 134
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12P LOSS MUTATED     11   16
  12P LOSS WILD-TYPE  167  134
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1               11                167
  CLUS_2               16                134

Clustering(64) Variable = 12Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12Q LOSS MUTATED        1      6      3      3
  12Q LOSS WILD-TYPE     41     46     29     25
D64V1, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1                1                 41
  CLUS_2                6                 46
  CLUS_3                3                 29
  CLUS_4                3                 25
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12Q LOSS MUTATED        3      6      0      4
  12Q LOSS WILD-TYPE     19     50     23     49
D64V2, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1                3                 19
  CLUS_2                6                 50
  CLUS_3                0                 23
  CLUS_4                4                 49
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12Q LOSS MUTATED       19     15     14
  12Q LOSS WILD-TYPE    174    147    121
D64V3, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1               19                174
  CLUS_2               15                147
  CLUS_3               14                121
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12Q LOSS MUTATED       13     10     12
  12Q LOSS WILD-TYPE    129    104     88
D64V4, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1               13                129
  CLUS_2               10                104
  CLUS_3               12                 88
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12Q LOSS MUTATED        3      2      9
  12Q LOSS WILD-TYPE     57     71     52
D64V5, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1                3                 57
  CLUS_2                2                 71
  CLUS_3                9                 52
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12Q LOSS MUTATED        3      6      3      2
  12Q LOSS WILD-TYPE     55     41     46     38
D64V6, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1                3                 55
  CLUS_2                6                 41
  CLUS_3                3                 46
  CLUS_4                2                 38
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12Q LOSS MUTATED       13     14     15      5
  12Q LOSS WILD-TYPE    105    129    128     70
D64V7, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1               13                105
  CLUS_2               14                129
  CLUS_3               15                128
  CLUS_4                5                 70
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12Q LOSS MUTATED       11     16     20
  12Q LOSS WILD-TYPE     82    124    226
D64V8, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1               11                 82
  CLUS_2               16                124
  CLUS_3               20                226
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12Q LOSS MUTATED       10     19     11      5
  12Q LOSS WILD-TYPE    135    111    114     59
D64V9, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1               10                135
  CLUS_2               19                111
  CLUS_3               11                114
  CLUS_4                5                 59
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12Q LOSS MUTATED        6     25     14
  12Q LOSS WILD-TYPE     65    138    216
D64V10, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1                6                 65
  CLUS_2               25                138
  CLUS_3               14                216
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12Q LOSS MUTATED       14     14      7
  12Q LOSS WILD-TYPE    111     98     84
D64V11, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1               14                111
  CLUS_2               14                 98
  CLUS_3                7                 84
D64V12, binary
                    cls
clus                   0   1
  12Q LOSS MUTATED    18  17
  12Q LOSS WILD-TYPE 160 133
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12Q LOSS MUTATED     18   17
  12Q LOSS WILD-TYPE  160  133
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1               18                160
  CLUS_2               17                133

Clustering(65) Variable = 13Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  13Q LOSS MUTATED       27     30     23     17
  13Q LOSS WILD-TYPE     15     22      9     11
D65V1, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1               27                 15
  CLUS_2               30                 22
  CLUS_3               23                  9
  CLUS_4               17                 11
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  13Q LOSS MUTATED       13     33     16     35
  13Q LOSS WILD-TYPE      9     23      7     18
D65V2, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1               13                  9
  CLUS_2               33                 23
  CLUS_3               16                  7
  CLUS_4               35                 18
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q LOSS MUTATED      109     99     97
  13Q LOSS WILD-TYPE     84     63     38
D65V3, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1              109                 84
  CLUS_2               99                 63
  CLUS_3               97                 38
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q LOSS MUTATED       76     75     67
  13Q LOSS WILD-TYPE     66     39     33
D65V4, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1               76                 66
  CLUS_2               75                 39
  CLUS_3               67                 33
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q LOSS MUTATED       39     44     41
  13Q LOSS WILD-TYPE     21     29     20
D65V5, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1               39                 21
  CLUS_2               44                 29
  CLUS_3               41                 20
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  13Q LOSS MUTATED       35     34     30     25
  13Q LOSS WILD-TYPE     23     13     19     15
D65V6, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1               35                 23
  CLUS_2               34                 13
  CLUS_3               30                 19
  CLUS_4               25                 15
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  13Q LOSS MUTATED       64     91     94     50
  13Q LOSS WILD-TYPE     54     52     49     25
D65V7, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1               64                 54
  CLUS_2               91                 52
  CLUS_3               94                 49
  CLUS_4               50                 25
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q LOSS MUTATED       64     93    142
  13Q LOSS WILD-TYPE     29     47    104
D65V8, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1               64                 29
  CLUS_2               93                 47
  CLUS_3              142                104
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  13Q LOSS MUTATED       89     86     71     44
  13Q LOSS WILD-TYPE     56     44     54     20
D65V9, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1               89                 56
  CLUS_2               86                 44
  CLUS_3               71                 54
  CLUS_4               44                 20
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q LOSS MUTATED       50    106    134
  13Q LOSS WILD-TYPE     21     57     96
D65V10, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1               50                 21
  CLUS_2              106                 57
  CLUS_3              134                 96
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q LOSS MUTATED       92     63     47
  13Q LOSS WILD-TYPE     33     49     44
D65V11, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1               92                 33
  CLUS_2               63                 49
  CLUS_3               47                 44
D65V12, binary
                    cls
clus                   0   1
  13Q LOSS MUTATED    98 104
  13Q LOSS WILD-TYPE  80  46
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  13Q LOSS MUTATED     98  104
  13Q LOSS WILD-TYPE   80   46
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1               98                 80
  CLUS_2              104                 46

Clustering(66) Variable = 14Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  14Q LOSS MUTATED        2     21     12     12
  14Q LOSS WILD-TYPE     40     31     20     16
D66V1, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1                2                 40
  CLUS_2               21                 31
  CLUS_3               12                 20
  CLUS_4               12                 16
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  14Q LOSS MUTATED        9     23      4     11
  14Q LOSS WILD-TYPE     13     33     19     42
D66V2, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1                9                 13
  CLUS_2               23                 33
  CLUS_3                4                 19
  CLUS_4               11                 42
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q LOSS MUTATED       56     66     43
  14Q LOSS WILD-TYPE    137     96     92
D66V3, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1               56                137
  CLUS_2               66                 96
  CLUS_3               43                 92
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q LOSS MUTATED       47     49     30
  14Q LOSS WILD-TYPE     95     65     70
D66V4, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1               47                 95
  CLUS_2               49                 65
  CLUS_3               30                 70
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q LOSS MUTATED       26     18     24
  14Q LOSS WILD-TYPE     34     55     37
D66V5, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1               26                 34
  CLUS_2               18                 55
  CLUS_3               24                 37
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  14Q LOSS MUTATED       26     16     12     14
  14Q LOSS WILD-TYPE     32     31     37     26
D66V6, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1               26                 32
  CLUS_2               16                 31
  CLUS_3               12                 37
  CLUS_4               14                 26
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  14Q LOSS MUTATED       17     62     67     14
  14Q LOSS WILD-TYPE    101     81     76     61
D66V7, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1               17                101
  CLUS_2               62                 81
  CLUS_3               67                 76
  CLUS_4               14                 61
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q LOSS MUTATED       52     62     46
  14Q LOSS WILD-TYPE     41     78    200
D66V8, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1               52                 41
  CLUS_2               62                 78
  CLUS_3               46                200
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  14Q LOSS MUTATED       46     37     30     42
  14Q LOSS WILD-TYPE     99     93     95     22
D66V9, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1               46                 99
  CLUS_2               37                 93
  CLUS_3               30                 95
  CLUS_4               42                 22
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q LOSS MUTATED       42     52     61
  14Q LOSS WILD-TYPE     29    111    169
D66V10, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1               42                 29
  CLUS_2               52                111
  CLUS_3               61                169
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q LOSS MUTATED       48     27     39
  14Q LOSS WILD-TYPE     77     85     52
D66V11, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1               48                 77
  CLUS_2               27                 85
  CLUS_3               39                 52
D66V12, binary
                    cls
clus                   0   1
  14Q LOSS MUTATED    51  63
  14Q LOSS WILD-TYPE 127  87
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  14Q LOSS MUTATED     51   63
  14Q LOSS WILD-TYPE  127   87
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1               51                127
  CLUS_2               63                 87

Clustering(67) Variable = 15Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  15Q LOSS MUTATED       13     14     10     11
  15Q LOSS WILD-TYPE     29     38     22     17
D67V1, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1               13                 29
  CLUS_2               14                 38
  CLUS_3               10                 22
  CLUS_4               11                 17
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  15Q LOSS MUTATED       11     16      7     14
  15Q LOSS WILD-TYPE     11     40     16     39
D67V2, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1               11                 11
  CLUS_2               16                 40
  CLUS_3                7                 16
  CLUS_4               14                 39
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q LOSS MUTATED       46     49     42
  15Q LOSS WILD-TYPE    147    113     93
D67V3, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1               46                147
  CLUS_2               49                113
  CLUS_3               42                 93
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q LOSS MUTATED       36     26     37
  15Q LOSS WILD-TYPE    106     88     63
D67V4, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1               36                106
  CLUS_2               26                 88
  CLUS_3               37                 63
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q LOSS MUTATED       20     21     13
  15Q LOSS WILD-TYPE     40     52     48
D67V5, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1               20                 40
  CLUS_2               21                 52
  CLUS_3               13                 48
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  15Q LOSS MUTATED       23     12     16      3
  15Q LOSS WILD-TYPE     35     35     33     37
D67V6, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1               23                 35
  CLUS_2               12                 35
  CLUS_3               16                 33
  CLUS_4                3                 37
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  15Q LOSS MUTATED       35     34     51     16
  15Q LOSS WILD-TYPE     83    109     92     59
D67V7, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1               35                 83
  CLUS_2               34                109
  CLUS_3               51                 92
  CLUS_4               16                 59
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q LOSS MUTATED       38     32     66
  15Q LOSS WILD-TYPE     55    108    180
D67V8, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1               38                 55
  CLUS_2               32                108
  CLUS_3               66                180
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  15Q LOSS MUTATED       46     43     25     14
  15Q LOSS WILD-TYPE     99     87    100     50
D67V9, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1               46                 99
  CLUS_2               43                 87
  CLUS_3               25                100
  CLUS_4               14                 50
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q LOSS MUTATED       14     52     62
  15Q LOSS WILD-TYPE     57    111    168
D67V10, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1               14                 57
  CLUS_2               52                111
  CLUS_3               62                168
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q LOSS MUTATED       40     34     14
  15Q LOSS WILD-TYPE     85     78     77
D67V11, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1               40                 85
  CLUS_2               34                 78
  CLUS_3               14                 77
D67V12, binary
                    cls
clus                   0   1
  15Q LOSS MUTATED    47  41
  15Q LOSS WILD-TYPE 131 109
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  15Q LOSS MUTATED     47   41
  15Q LOSS WILD-TYPE  131  109
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1               47                131
  CLUS_2               41                109

Clustering(68) Variable = 16P LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16P LOSS MUTATED       13     17      8      8
  16P LOSS WILD-TYPE     29     35     24     20
D68V1, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1               13                 29
  CLUS_2               17                 35
  CLUS_3                8                 24
  CLUS_4                8                 20
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16P LOSS MUTATED        5     18      6     17
  16P LOSS WILD-TYPE     17     38     17     36
D68V2, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1                5                 17
  CLUS_2               18                 38
  CLUS_3                6                 17
  CLUS_4               17                 36
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P LOSS MUTATED       44     55     56
  16P LOSS WILD-TYPE    149    107     79
D68V3, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1               44                149
  CLUS_2               55                107
  CLUS_3               56                 79
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P LOSS MUTATED       38     39     39
  16P LOSS WILD-TYPE    104     75     61
D68V4, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1               38                104
  CLUS_2               39                 75
  CLUS_3               39                 61
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P LOSS MUTATED       23     22     13
  16P LOSS WILD-TYPE     37     51     48
D68V5, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1               23                 37
  CLUS_2               22                 51
  CLUS_3               13                 48
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16P LOSS MUTATED       20     11     17     10
  16P LOSS WILD-TYPE     38     36     32     30
D68V6, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1               20                 38
  CLUS_2               11                 36
  CLUS_3               17                 32
  CLUS_4               10                 30
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16P LOSS MUTATED       33     51     47     20
  16P LOSS WILD-TYPE     85     92     96     55
D68V7, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1               33                 85
  CLUS_2               51                 92
  CLUS_3               47                 96
  CLUS_4               20                 55
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P LOSS MUTATED       33     47     71
  16P LOSS WILD-TYPE     60     93    175
D68V8, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1               33                 60
  CLUS_2               47                 93
  CLUS_3               71                175
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16P LOSS MUTATED       39     49     34     25
  16P LOSS WILD-TYPE    106     81     91     39
D68V9, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1               39                106
  CLUS_2               49                 81
  CLUS_3               34                 91
  CLUS_4               25                 39
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P LOSS MUTATED       20     59     68
  16P LOSS WILD-TYPE     51    104    162
D68V10, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1               20                 51
  CLUS_2               59                104
  CLUS_3               68                162
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P LOSS MUTATED       49     29     29
  16P LOSS WILD-TYPE     76     83     62
D68V11, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1               49                 76
  CLUS_2               29                 83
  CLUS_3               29                 62
D68V12, binary
                    cls
clus                   0   1
  16P LOSS MUTATED    53  54
  16P LOSS WILD-TYPE 125  96
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16P LOSS MUTATED     53   54
  16P LOSS WILD-TYPE  125   96
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1               53                125
  CLUS_2               54                 96

Clustering(69) Variable = 16Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16Q LOSS MUTATED       13     21     10     10
  16Q LOSS WILD-TYPE     29     31     22     18
D69V1, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1               13                 29
  CLUS_2               21                 31
  CLUS_3               10                 22
  CLUS_4               10                 18
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16Q LOSS MUTATED        7     23      6     18
  16Q LOSS WILD-TYPE     15     33     17     35
D69V2, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1                7                 15
  CLUS_2               23                 33
  CLUS_3                6                 17
  CLUS_4               18                 35
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q LOSS MUTATED       53     68     56
  16Q LOSS WILD-TYPE    140     94     79
D69V3, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1               53                140
  CLUS_2               68                 94
  CLUS_3               56                 79
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q LOSS MUTATED       44     41     43
  16Q LOSS WILD-TYPE     98     73     57
D69V4, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1               44                 98
  CLUS_2               41                 73
  CLUS_3               43                 57
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q LOSS MUTATED       28     23     19
  16Q LOSS WILD-TYPE     32     50     42
D69V5, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1               28                 32
  CLUS_2               23                 50
  CLUS_3               19                 42
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16Q LOSS MUTATED       22     19     16     13
  16Q LOSS WILD-TYPE     36     28     33     27
D69V6, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1               22                 36
  CLUS_2               19                 28
  CLUS_3               16                 33
  CLUS_4               13                 27
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16Q LOSS MUTATED       35     57     60     20
  16Q LOSS WILD-TYPE     83     86     83     55
D69V7, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1               35                 83
  CLUS_2               57                 86
  CLUS_3               60                 83
  CLUS_4               20                 55
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q LOSS MUTATED       42     55     75
  16Q LOSS WILD-TYPE     51     85    171
D69V8, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1               42                 51
  CLUS_2               55                 85
  CLUS_3               75                171
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16Q LOSS MUTATED       48     56     34     30
  16Q LOSS WILD-TYPE     97     74     91     34
D69V9, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1               48                 97
  CLUS_2               56                 74
  CLUS_3               34                 91
  CLUS_4               30                 34
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q LOSS MUTATED       24     72     72
  16Q LOSS WILD-TYPE     47     91    158
D69V10, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1               24                 47
  CLUS_2               72                 91
  CLUS_3               72                158
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q LOSS MUTATED       57     28     35
  16Q LOSS WILD-TYPE     68     84     56
D69V11, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1               57                 68
  CLUS_2               28                 84
  CLUS_3               35                 56
D69V12, binary
                    cls
clus                   0   1
  16Q LOSS MUTATED    55  65
  16Q LOSS WILD-TYPE 123  85
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16Q LOSS MUTATED     55   65
  16Q LOSS WILD-TYPE  123   85
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1               55                123
  CLUS_2               65                 85

Clustering(70) Variable = 17P LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17P LOSS MUTATED       33     26     22     12
  17P LOSS WILD-TYPE      9     26     10     16
D70V1, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1               33                  9
  CLUS_2               26                 26
  CLUS_3               22                 10
  CLUS_4               12                 16
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17P LOSS MUTATED       14     29     17     33
  17P LOSS WILD-TYPE      8     27      6     20
D70V2, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1               14                  8
  CLUS_2               29                 27
  CLUS_3               17                  6
  CLUS_4               33                 20
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P LOSS MUTATED      104     85     96
  17P LOSS WILD-TYPE     89     77     39
D70V3, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1              104                 89
  CLUS_2               85                 77
  CLUS_3               96                 39
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P LOSS MUTATED       76     55     68
  17P LOSS WILD-TYPE     66     59     32
D70V4, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1               76                 66
  CLUS_2               55                 59
  CLUS_3               68                 32
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P LOSS MUTATED       37     37     35
  17P LOSS WILD-TYPE     23     36     26
D70V5, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1               37                 23
  CLUS_2               37                 36
  CLUS_3               35                 26
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17P LOSS MUTATED       43     24     25     17
  17P LOSS WILD-TYPE     15     23     24     23
D70V6, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1               43                 15
  CLUS_2               24                 23
  CLUS_3               25                 24
  CLUS_4               17                 23
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17P LOSS MUTATED       81     64     93     42
  17P LOSS WILD-TYPE     37     79     50     33
D70V7, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1               81                 37
  CLUS_2               64                 79
  CLUS_3               93                 50
  CLUS_4               42                 33
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P LOSS MUTATED       63     67    150
  17P LOSS WILD-TYPE     30     73     96
D70V8, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1               63                 30
  CLUS_2               67                 73
  CLUS_3              150                 96
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17P LOSS MUTATED       93     84     66     30
  17P LOSS WILD-TYPE     52     46     59     34
D70V9, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1               93                 52
  CLUS_2               84                 46
  CLUS_3               66                 59
  CLUS_4               30                 34
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P LOSS MUTATED       30    102    141
  17P LOSS WILD-TYPE     41     61     89
D70V10, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1               30                 41
  CLUS_2              102                 61
  CLUS_3              141                 89
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P LOSS MUTATED       71     68     50
  17P LOSS WILD-TYPE     54     44     41
D70V11, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1               71                 54
  CLUS_2               68                 44
  CLUS_3               50                 41
D70V12, binary
                    cls
clus                   0   1
  17P LOSS MUTATED   102  87
  17P LOSS WILD-TYPE  76  63
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17P LOSS MUTATED    102   87
  17P LOSS WILD-TYPE   76   63
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1              102                 76
  CLUS_2               87                 63

Clustering(71) Variable = 17Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17Q LOSS MUTATED       13      3      8      3
  17Q LOSS WILD-TYPE     29     49     24     25
D71V1, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1               13                 29
  CLUS_2                3                 49
  CLUS_3                8                 24
  CLUS_4                3                 25
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17Q LOSS MUTATED        7      3      5     12
  17Q LOSS WILD-TYPE     15     53     18     41
D71V2, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1                7                 15
  CLUS_2                3                 53
  CLUS_3                5                 18
  CLUS_4               12                 41
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q LOSS MUTATED       47     15     28
  17Q LOSS WILD-TYPE    146    147    107
D71V3, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1               47                146
  CLUS_2               15                147
  CLUS_3               28                107
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q LOSS MUTATED       38      8     20
  17Q LOSS WILD-TYPE    104    106     80
D71V4, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1               38                104
  CLUS_2                8                106
  CLUS_3               20                 80
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q LOSS MUTATED        8     11     14
  17Q LOSS WILD-TYPE     52     62     47
D71V5, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1                8                 52
  CLUS_2               11                 62
  CLUS_3               14                 47
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17Q LOSS MUTATED       10      8      6      9
  17Q LOSS WILD-TYPE     48     39     43     31
D71V6, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1               10                 48
  CLUS_2                8                 39
  CLUS_3                6                 43
  CLUS_4                9                 31
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17Q LOSS MUTATED       34     10     27     18
  17Q LOSS WILD-TYPE     84    133    116     57
D71V7, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1               34                 84
  CLUS_2               10                133
  CLUS_3               27                116
  CLUS_4               18                 57
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q LOSS MUTATED       13     11     65
  17Q LOSS WILD-TYPE     80    129    181
D71V8, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1               13                 80
  CLUS_2               11                129
  CLUS_3               65                181
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17Q LOSS MUTATED       24     21     32     10
  17Q LOSS WILD-TYPE    121    109     93     54
D71V9, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1               24                121
  CLUS_2               21                109
  CLUS_3               32                 93
  CLUS_4               10                 54
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q LOSS MUTATED        6     35     46
  17Q LOSS WILD-TYPE     65    128    184
D71V10, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1                6                 65
  CLUS_2               35                128
  CLUS_3               46                184
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q LOSS MUTATED       16     28     18
  17Q LOSS WILD-TYPE    109     84     73
D71V11, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1               16                109
  CLUS_2               28                 84
  CLUS_3               18                 73
D71V12, binary
                    cls
clus                   0   1
  17Q LOSS MUTATED    46  16
  17Q LOSS WILD-TYPE 132 134
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17Q LOSS MUTATED     46   16
  17Q LOSS WILD-TYPE  132  134
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1               46                132
  CLUS_2               16                134

Clustering(72) Variable = 18P LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18P LOSS MUTATED       14     14     11      8
  18P LOSS WILD-TYPE     28     38     21     20
D72V1, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1               14                 28
  CLUS_2               14                 38
  CLUS_3               11                 21
  CLUS_4                8                 20
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18P LOSS MUTATED        6     15      6     20
  18P LOSS WILD-TYPE     16     41     17     33
D72V2, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1                6                 16
  CLUS_2               15                 41
  CLUS_3                6                 17
  CLUS_4               20                 33
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P LOSS MUTATED       53     36     50
  18P LOSS WILD-TYPE    140    126     85
D72V3, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1               53                140
  CLUS_2               36                126
  CLUS_3               50                 85
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P LOSS MUTATED       48     30     21
  18P LOSS WILD-TYPE     94     84     79
D72V4, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1               48                 94
  CLUS_2               30                 84
  CLUS_3               21                 79
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P LOSS MUTATED       14     15     17
  18P LOSS WILD-TYPE     46     58     44
D72V5, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1               14                 46
  CLUS_2               15                 58
  CLUS_3               17                 44
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18P LOSS MUTATED       13     11     11     11
  18P LOSS WILD-TYPE     45     36     38     29
D72V6, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1               13                 45
  CLUS_2               11                 36
  CLUS_3               11                 38
  CLUS_4               11                 29
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18P LOSS MUTATED       39     32     46     20
  18P LOSS WILD-TYPE     79    111     97     55
D72V7, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1               39                 79
  CLUS_2               32                111
  CLUS_3               46                 97
  CLUS_4               20                 55
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P LOSS MUTATED       27     30     80
  18P LOSS WILD-TYPE     66    110    166
D72V8, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1               27                 66
  CLUS_2               30                110
  CLUS_3               80                166
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18P LOSS MUTATED       41     42     35     13
  18P LOSS WILD-TYPE    104     88     90     51
D72V9, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1               41                104
  CLUS_2               42                 88
  CLUS_3               35                 90
  CLUS_4               13                 51
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P LOSS MUTATED       11     54     66
  18P LOSS WILD-TYPE     60    109    164
D72V10, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1               11                 60
  CLUS_2               54                109
  CLUS_3               66                164
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P LOSS MUTATED       36     40     15
  18P LOSS WILD-TYPE     89     72     76
D72V11, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1               36                 89
  CLUS_2               40                 72
  CLUS_3               15                 76
D72V12, binary
                    cls
clus                   0   1
  18P LOSS MUTATED    52  39
  18P LOSS WILD-TYPE 126 111
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18P LOSS MUTATED     52   39
  18P LOSS WILD-TYPE  126  111
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1               52                126
  CLUS_2               39                111

Clustering(73) Variable = 18Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18Q LOSS MUTATED       19     15     14      7
  18Q LOSS WILD-TYPE     23     37     18     21
D73V1, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1               19                 23
  CLUS_2               15                 37
  CLUS_3               14                 18
  CLUS_4                7                 21
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18Q LOSS MUTATED        6     16      7     26
  18Q LOSS WILD-TYPE     16     40     16     27
D73V2, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1                6                 16
  CLUS_2               16                 40
  CLUS_3                7                 16
  CLUS_4               26                 27
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q LOSS MUTATED       66     55     61
  18Q LOSS WILD-TYPE    127    107     74
D73V3, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1               66                127
  CLUS_2               55                107
  CLUS_3               61                 74
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q LOSS MUTATED       59     43     32
  18Q LOSS WILD-TYPE     83     71     68
D73V4, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1               59                 83
  CLUS_2               43                 71
  CLUS_3               32                 68
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q LOSS MUTATED       17     26     18
  18Q LOSS WILD-TYPE     43     47     43
D73V5, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1               17                 43
  CLUS_2               26                 47
  CLUS_3               18                 43
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18Q LOSS MUTATED       16     14     18     13
  18Q LOSS WILD-TYPE     42     33     31     27
D73V6, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1               16                 42
  CLUS_2               14                 33
  CLUS_3               18                 31
  CLUS_4               13                 27
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18Q LOSS MUTATED       49     46     56     29
  18Q LOSS WILD-TYPE     69     97     87     46
D73V7, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1               49                 69
  CLUS_2               46                 97
  CLUS_3               56                 87
  CLUS_4               29                 46
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q LOSS MUTATED       30     41    109
  18Q LOSS WILD-TYPE     63     99    137
D73V8, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1               30                 63
  CLUS_2               41                 99
  CLUS_3              109                137
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18Q LOSS MUTATED       54     55     47     17
  18Q LOSS WILD-TYPE     91     75     78     47
D73V9, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1               54                 91
  CLUS_2               55                 75
  CLUS_3               47                 78
  CLUS_4               17                 47
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q LOSS MUTATED       17     65     91
  18Q LOSS WILD-TYPE     54     98    139
D73V10, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1               17                 54
  CLUS_2               65                 98
  CLUS_3               91                139
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q LOSS MUTATED       49     50     26
  18Q LOSS WILD-TYPE     76     62     65
D73V11, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1               49                 76
  CLUS_2               50                 62
  CLUS_3               26                 65
D73V12, binary
                    cls
clus                   0   1
  18Q LOSS MUTATED    69  56
  18Q LOSS WILD-TYPE 109  94
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18Q LOSS MUTATED     69   56
  18Q LOSS WILD-TYPE  109   94
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1               69                109
  CLUS_2               56                 94

Clustering(74) Variable = 19P LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19P LOSS MUTATED       12     13     15     14
  19P LOSS WILD-TYPE     30     39     17     14
D74V1, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1               12                 30
  CLUS_2               13                 39
  CLUS_3               15                 17
  CLUS_4               14                 14
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19P LOSS MUTATED       14     14      4     22
  19P LOSS WILD-TYPE      8     42     19     31
D74V2, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1               14                  8
  CLUS_2               14                 42
  CLUS_3                4                 19
  CLUS_4               22                 31
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P LOSS MUTATED       48     49     67
  19P LOSS WILD-TYPE    145    113     68
D74V3, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1               48                145
  CLUS_2               49                113
  CLUS_3               67                 68
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P LOSS MUTATED       45     35     37
  19P LOSS WILD-TYPE     97     79     63
D74V4, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1               45                 97
  CLUS_2               35                 79
  CLUS_3               37                 63
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P LOSS MUTATED       19     26     19
  19P LOSS WILD-TYPE     41     47     42
D74V5, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1               19                 41
  CLUS_2               26                 47
  CLUS_3               19                 42
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19P LOSS MUTATED       17     14     21     12
  19P LOSS WILD-TYPE     41     33     28     28
D74V6, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1               17                 41
  CLUS_2               14                 33
  CLUS_3               21                 28
  CLUS_4               12                 28
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19P LOSS MUTATED       40     38     54     30
  19P LOSS WILD-TYPE     78    105     89     45
D74V7, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1               40                 78
  CLUS_2               38                105
  CLUS_3               54                 89
  CLUS_4               30                 45
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P LOSS MUTATED       40     36     86
  19P LOSS WILD-TYPE     53    104    160
D74V8, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1               40                 53
  CLUS_2               36                104
  CLUS_3               86                160
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19P LOSS MUTATED       44     56     35     17
  19P LOSS WILD-TYPE    101     74     90     47
D74V9, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1               44                101
  CLUS_2               56                 74
  CLUS_3               35                 90
  CLUS_4               17                 47
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P LOSS MUTATED       12     70     70
  19P LOSS WILD-TYPE     59     93    160
D74V10, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1               12                 59
  CLUS_2               70                 93
  CLUS_3               70                160
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P LOSS MUTATED       41     40     28
  19P LOSS WILD-TYPE     84     72     63
D74V11, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1               41                 84
  CLUS_2               40                 72
  CLUS_3               28                 63
D74V12, binary
                    cls
clus                   0   1
  19P LOSS MUTATED    60  49
  19P LOSS WILD-TYPE 118 101
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19P LOSS MUTATED     60   49
  19P LOSS WILD-TYPE  118  101
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1               60                118
  CLUS_2               49                101

Clustering(75) Variable = 19Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19Q LOSS MUTATED        6     11      8      7
  19Q LOSS WILD-TYPE     36     41     24     21
D75V1, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1                6                 36
  CLUS_2               11                 41
  CLUS_3                8                 24
  CLUS_4                7                 21
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19Q LOSS MUTATED        8     13      3      8
  19Q LOSS WILD-TYPE     14     43     20     45
D75V2, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1                8                 14
  CLUS_2               13                 43
  CLUS_3                3                 20
  CLUS_4                8                 45
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q LOSS MUTATED       30     42     38
  19Q LOSS WILD-TYPE    163    120     97
D75V3, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1               30                163
  CLUS_2               42                120
  CLUS_3               38                 97
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q LOSS MUTATED       23     28     29
  19Q LOSS WILD-TYPE    119     86     71
D75V4, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1               23                119
  CLUS_2               28                 86
  CLUS_3               29                 71
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q LOSS MUTATED       17     14     11
  19Q LOSS WILD-TYPE     43     59     50
D75V5, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1               17                 43
  CLUS_2               14                 59
  CLUS_3               11                 50
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19Q LOSS MUTATED       13      9     12      8
  19Q LOSS WILD-TYPE     45     38     37     32
D75V6, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1               13                 45
  CLUS_2                9                 38
  CLUS_3               12                 37
  CLUS_4                8                 32
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19Q LOSS MUTATED       30     36     29     15
  19Q LOSS WILD-TYPE     88    107    114     60
D75V7, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1               30                 88
  CLUS_2               36                107
  CLUS_3               29                114
  CLUS_4               15                 60
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q LOSS MUTATED       19     33     58
  19Q LOSS WILD-TYPE     74    107    188
D75V8, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1               19                 74
  CLUS_2               33                107
  CLUS_3               58                188
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19Q LOSS MUTATED       29     35     23     17
  19Q LOSS WILD-TYPE    116     95    102     47
D75V9, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1               29                116
  CLUS_2               35                 95
  CLUS_3               23                102
  CLUS_4               17                 47
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q LOSS MUTATED       13     45     46
  19Q LOSS WILD-TYPE     58    118    184
D75V10, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1               13                 58
  CLUS_2               45                118
  CLUS_3               46                184
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q LOSS MUTATED       32     26     18
  19Q LOSS WILD-TYPE     93     86     73
D75V11, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1               32                 93
  CLUS_2               26                 86
  CLUS_3               18                 73
D75V12, binary
                    cls
clus                   0   1
  19Q LOSS MUTATED    37  39
  19Q LOSS WILD-TYPE 141 111
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19Q LOSS MUTATED     37   39
  19Q LOSS WILD-TYPE  141  111
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1               37                141
  CLUS_2               39                111

Clustering(76) Variable = 20P LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20P LOSS MUTATED        1      4      5      4
  20P LOSS WILD-TYPE     41     48     27     24
D76V1, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1                1                 41
  CLUS_2                4                 48
  CLUS_3                5                 27
  CLUS_4                4                 24
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20P LOSS MUTATED        4      4      1      5
  20P LOSS WILD-TYPE     18     52     22     48
D76V2, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1                4                 18
  CLUS_2                4                 52
  CLUS_3                1                 22
  CLUS_4                5                 48
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P LOSS MUTATED       15      6     20
  20P LOSS WILD-TYPE    178    156    115
D76V3, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1               15                178
  CLUS_2                6                156
  CLUS_3               20                115
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P LOSS MUTATED        9      4     15
  20P LOSS WILD-TYPE    133    110     85
D76V4, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1                9                133
  CLUS_2                4                110
  CLUS_3               15                 85
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P LOSS MUTATED       12      6      6
  20P LOSS WILD-TYPE     48     67     55
D76V5, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1               12                 48
  CLUS_2                6                 67
  CLUS_3                6                 55
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20P LOSS MUTATED       11      6      5      2
  20P LOSS WILD-TYPE     47     41     44     38
D76V6, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1               11                 47
  CLUS_2                6                 41
  CLUS_3                5                 44
  CLUS_4                2                 38
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20P LOSS MUTATED       13      8     16      4
  20P LOSS WILD-TYPE    105    135    127     71
D76V7, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1               13                105
  CLUS_2                8                135
  CLUS_3               16                127
  CLUS_4                4                 71
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P LOSS MUTATED       12      8     21
  20P LOSS WILD-TYPE     81    132    225
D76V8, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1               12                 81
  CLUS_2                8                132
  CLUS_3               21                225
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20P LOSS MUTATED       19     13      5      4
  20P LOSS WILD-TYPE    126    117    120     60
D76V9, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1               19                126
  CLUS_2               13                117
  CLUS_3                5                120
  CLUS_4                4                 60
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P LOSS MUTATED        7     12     22
  20P LOSS WILD-TYPE     64    151    208
D76V10, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1                7                 64
  CLUS_2               12                151
  CLUS_3               22                208
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P LOSS MUTATED       11     10      3
  20P LOSS WILD-TYPE    114    102     88
D76V11, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1               11                114
  CLUS_2               10                102
  CLUS_3                3                 88
D76V12, binary
                    cls
clus                   0   1
  20P LOSS MUTATED    11  13
  20P LOSS WILD-TYPE 167 137
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20P LOSS MUTATED     11   13
  20P LOSS WILD-TYPE  167  137
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1               11                167
  CLUS_2               13                137

Clustering(77) Variable = 20Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20Q LOSS MUTATED        1     10      3      2
  20Q LOSS WILD-TYPE     41     42     29     26
D77V1, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1                1                 41
  CLUS_2               10                 42
  CLUS_3                3                 29
  CLUS_4                2                 26
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20Q LOSS MUTATED        1     10      2      3
  20Q LOSS WILD-TYPE     21     46     21     50
D77V2, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1                1                 21
  CLUS_2               10                 46
  CLUS_3                2                 21
  CLUS_4                3                 50
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20Q LOSS MUTATED       14     25      7
  20Q LOSS WILD-TYPE    179    137    128
D77V3, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1               14                179
  CLUS_2               25                137
  CLUS_3                7                128
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20Q LOSS MUTATED        9     17      7
  20Q LOSS WILD-TYPE    133     97     93
D77V4, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1                9                133
  CLUS_2               17                 97
  CLUS_3                7                 93
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20Q LOSS MUTATED        7      4      8
  20Q LOSS WILD-TYPE     53     69     53
D77V5, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1                7                 53
  CLUS_2                4                 69
  CLUS_3                8                 53
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20Q LOSS MUTATED        5      8      4      2
  20Q LOSS WILD-TYPE     53     39     45     38
D77V6, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1                5                 53
  CLUS_2                8                 39
  CLUS_3                4                 45
  CLUS_4                2                 38
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20Q LOSS MUTATED        4     26     11      4
  20Q LOSS WILD-TYPE    114    117    132     71
D77V7, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1                4                114
  CLUS_2               26                117
  CLUS_3               11                132
  CLUS_4                4                 71
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20Q LOSS MUTATED        8     25     12
  20Q LOSS WILD-TYPE     85    115    234
D77V8, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1                8                 85
  CLUS_2               25                115
  CLUS_3               12                234
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20Q LOSS MUTATED       18     15      6      7
  20Q LOSS WILD-TYPE    127    115    119     57
D77V9, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1               18                127
  CLUS_2               15                115
  CLUS_3                6                119
  CLUS_4                7                 57
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20Q LOSS MUTATED        9     14     23
  20Q LOSS WILD-TYPE     62    149    207
D77V10, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1                9                 62
  CLUS_2               14                149
  CLUS_3               23                207
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20Q LOSS MUTATED       15      7      5
  20Q LOSS WILD-TYPE    110    105     86
D77V11, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1               15                110
  CLUS_2                7                105
  CLUS_3                5                 86
D77V12, binary
                    cls
clus                   0   1
  20Q LOSS MUTATED    13  14
  20Q LOSS WILD-TYPE 165 136
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20Q LOSS MUTATED     13   14
  20Q LOSS WILD-TYPE  165  136
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1               13                165
  CLUS_2               14                136

Clustering(78) Variable = 21Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  21Q LOSS MUTATED       24     32     17     16
  21Q LOSS WILD-TYPE     18     20     15     12
D78V1, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1               24                 18
  CLUS_2               32                 20
  CLUS_3               17                 15
  CLUS_4               16                 12
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  21Q LOSS MUTATED       10     35     13     31
  21Q LOSS WILD-TYPE     12     21     10     22
D78V2, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1               10                 12
  CLUS_2               35                 21
  CLUS_3               13                 10
  CLUS_4               31                 22
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q LOSS MUTATED       75    105     80
  21Q LOSS WILD-TYPE    118     57     55
D78V3, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1               75                118
  CLUS_2              105                 57
  CLUS_3               80                 55
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q LOSS MUTATED       62     68     53
  21Q LOSS WILD-TYPE     80     46     47
D78V4, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1               62                 80
  CLUS_2               68                 46
  CLUS_3               53                 47
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q LOSS MUTATED       32     39     27
  21Q LOSS WILD-TYPE     28     34     34
D78V5, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1               32                 28
  CLUS_2               39                 34
  CLUS_3               27                 34
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  21Q LOSS MUTATED       30     25     27     16
  21Q LOSS WILD-TYPE     28     22     22     24
D78V6, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1               30                 28
  CLUS_2               25                 22
  CLUS_3               27                 22
  CLUS_4               16                 24
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  21Q LOSS MUTATED       59     88     75     34
  21Q LOSS WILD-TYPE     59     55     68     41
D78V7, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1               59                 59
  CLUS_2               88                 55
  CLUS_3               75                 68
  CLUS_4               34                 41
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q LOSS MUTATED       56     86    114
  21Q LOSS WILD-TYPE     37     54    132
D78V8, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1               56                 37
  CLUS_2               86                 54
  CLUS_3              114                132
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  21Q LOSS MUTATED       89     77     50     32
  21Q LOSS WILD-TYPE     56     53     75     32
D78V9, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1               89                 56
  CLUS_2               77                 53
  CLUS_3               50                 75
  CLUS_4               32                 32
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q LOSS MUTATED       39     99    110
  21Q LOSS WILD-TYPE     32     64    120
D78V10, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1               39                 32
  CLUS_2               99                 64
  CLUS_3              110                120
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q LOSS MUTATED       71     54     41
  21Q LOSS WILD-TYPE     54     58     50
D78V11, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1               71                 54
  CLUS_2               54                 58
  CLUS_3               41                 50
D78V12, binary
                    cls
clus                  0  1
  21Q LOSS MUTATED   79 87
  21Q LOSS WILD-TYPE 99 63
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  21Q LOSS MUTATED     79   87
  21Q LOSS WILD-TYPE   99   63
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1               79                 99
  CLUS_2               87                 63

Clustering(79) Variable = 22Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  22Q LOSS MUTATED        7      7      6     13
  22Q LOSS WILD-TYPE     35     45     26     15
D79V1, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1                7                 35
  CLUS_2                7                 45
  CLUS_3                6                 26
  CLUS_4               13                 15
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  22Q LOSS MUTATED        9      8      5     11
  22Q LOSS WILD-TYPE     13     48     18     42
D79V2, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1                9                 13
  CLUS_2                8                 48
  CLUS_3                5                 18
  CLUS_4               11                 42
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q LOSS MUTATED       41     23     31
  22Q LOSS WILD-TYPE    152    139    104
D79V3, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1               41                152
  CLUS_2               23                139
  CLUS_3               31                104
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q LOSS MUTATED       35     14     18
  22Q LOSS WILD-TYPE    107    100     82
D79V4, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1               35                107
  CLUS_2               14                100
  CLUS_3               18                 82
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q LOSS MUTATED       15     15      8
  22Q LOSS WILD-TYPE     45     58     53
D79V5, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1               15                 45
  CLUS_2               15                 58
  CLUS_3                8                 53
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  22Q LOSS MUTATED       18      4     11      5
  22Q LOSS WILD-TYPE     40     43     38     35
D79V6, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1               18                 40
  CLUS_2                4                 43
  CLUS_3               11                 38
  CLUS_4                5                 35
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  22Q LOSS MUTATED       23     14     43     14
  22Q LOSS WILD-TYPE     95    129    100     61
D79V7, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1               23                 95
  CLUS_2               14                129
  CLUS_3               43                100
  CLUS_4               14                 61
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q LOSS MUTATED       30     16     48
  22Q LOSS WILD-TYPE     63    124    198
D79V8, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1               30                 63
  CLUS_2               16                124
  CLUS_3               48                198
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  22Q LOSS MUTATED       32     24     23      7
  22Q LOSS WILD-TYPE    113    106    102     57
D79V9, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1               32                113
  CLUS_2               24                106
  CLUS_3               23                102
  CLUS_4                7                 57
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q LOSS MUTATED        6     34     46
  22Q LOSS WILD-TYPE     65    129    184
D79V10, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1                6                 65
  CLUS_2               34                129
  CLUS_3               46                184
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q LOSS MUTATED       24     18     19
  22Q LOSS WILD-TYPE    101     94     72
D79V11, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1               24                101
  CLUS_2               18                 94
  CLUS_3               19                 72
D79V12, binary
                    cls
clus                   0   1
  22Q LOSS MUTATED    32  29
  22Q LOSS WILD-TYPE 146 121
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  22Q LOSS MUTATED     32   29
  22Q LOSS WILD-TYPE  146  121
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1               32                146
  CLUS_2               29                121

Clustering(80) Variable = XQ LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XQ LOSS MUTATED        9     11      4     10
  XQ LOSS WILD-TYPE     33     41     28     18
D80V1, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1               9                33
  CLUS_2              11                41
  CLUS_3               4                28
  CLUS_4              10                18
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XQ LOSS MUTATED        4     11      9     10
  XQ LOSS WILD-TYPE     18     45     14     43
D80V2, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1               4                18
  CLUS_2              11                45
  CLUS_3               9                14
  CLUS_4              10                43
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ LOSS MUTATED       27     39     44
  XQ LOSS WILD-TYPE    166    123     91
D80V3, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1              27               166
  CLUS_2              39               123
  CLUS_3              44                91
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ LOSS MUTATED       18     28     33
  XQ LOSS WILD-TYPE    124     86     67
D80V4, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1              18               124
  CLUS_2              28                86
  CLUS_3              33                67
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ LOSS MUTATED       16     17     13
  XQ LOSS WILD-TYPE     44     56     48
D80V5, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1              16                44
  CLUS_2              17                56
  CLUS_3              13                48
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XQ LOSS MUTATED       13     13      9     11
  XQ LOSS WILD-TYPE     45     34     40     29
D80V6, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1              13                45
  CLUS_2              13                34
  CLUS_3               9                40
  CLUS_4              11                29
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XQ LOSS MUTATED       28     33     40      8
  XQ LOSS WILD-TYPE     90    110    103     67
D80V7, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1              28                90
  CLUS_2              33               110
  CLUS_3              40               103
  CLUS_4               8                67
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ LOSS MUTATED       30     32     47
  XQ LOSS WILD-TYPE     63    108    199
D80V8, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1              30                63
  CLUS_2              32               108
  CLUS_3              47               199
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XQ LOSS MUTATED       32     43     14     16
  XQ LOSS WILD-TYPE    113     87    111     48
D80V9, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1              32               113
  CLUS_2              43                87
  CLUS_3              14               111
  CLUS_4              16                48
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ LOSS MUTATED       17     45     43
  XQ LOSS WILD-TYPE     54    118    187
D80V10, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1              17                54
  CLUS_2              45               118
  CLUS_3              43               187
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ LOSS MUTATED       44     19     11
  XQ LOSS WILD-TYPE     81     93     80
D80V11, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1              44                81
  CLUS_2              19                93
  CLUS_3              11                80
D80V12, binary
                   cls
clus                  0   1
  XQ LOSS MUTATED    26  48
  XQ LOSS WILD-TYPE 152 102
[1] "tbl2"
                   cls
clus                [,1] [,2]
  XQ LOSS MUTATED     26   48
  XQ LOSS WILD-TYPE  152  102
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1              26               152
  CLUS_2              48               102
> q(save="no")
