
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/12/Correlate_Genomic_Events.R")
> result <- main("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/12/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-tTRUE", "-iD=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/PAAD-TP/6158611/transformed.cor.cli.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/Append_Data/PAAD-TP/6154740/PAAD-TP.merged_data.txt", "-fF=", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=1", "-cQ=0.25", "-MF=ONLYSIG", "-oT=PAAD-TP", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "terrence_modification_tag"
[1] TRUE
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"         "-oT=PAAD-TP"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/Append_Data/PAAD-TP/6154740/PAAD-TP.merged_data.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/PAAD-TP/6158611/transformed.cor.cli.txt"

nPatients in clinical file=58, in cluster file=81, common to both=57
[1] "Reduce the number of clustering variables from 80 to 61."
[1] 61 57
[1] "1P GAIN MUTATION ANALYSIS"
[1] 3
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
                3                54 
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
                3                54 
[1] "1Q GAIN MUTATION ANALYSIS"
[1] 3
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
               12                45 
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
               12                45 
[1] "2P GAIN MUTATION ANALYSIS"
[1] 3
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
                6                51 
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
                6                51 
[1] "2Q GAIN MUTATION ANALYSIS"
[1] 3
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
                7                50 
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
                7                50 
[1] "3P GAIN MUTATION ANALYSIS"
[1] 3
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
                3                54 
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
                3                54 
[1] "3Q GAIN MUTATION ANALYSIS"
[1] 3
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
                7                50 
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
                7                50 
[1] "4P GAIN MUTATION ANALYSIS"
[1] 3
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
                3                54 
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
                3                54 
[1] "4Q GAIN MUTATION ANALYSIS"
[1] 3
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
                3                54 
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
                3                54 
[1] "5P GAIN MUTATION ANALYSIS"
[1] 3
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
                5                52 
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
                5                52 
[1] "5Q GAIN MUTATION ANALYSIS"
[1] 3
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
                3                54 
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
                3                54 
[1] "7P GAIN MUTATION ANALYSIS"
[1] 3
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
               13                44 
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
               13                44 
[1] "7Q GAIN MUTATION ANALYSIS"
[1] 3
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
               12                45 
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
               12                45 
[1] "8P GAIN MUTATION ANALYSIS"
[1] 3
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
                8                49 
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
                8                49 
[1] "8Q GAIN MUTATION ANALYSIS"
[1] 3
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
               15                42 
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
               15                42 
[1] "9Q GAIN MUTATION ANALYSIS"
[1] 3
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
                3                54 
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
                3                54 
[1] "11P GAIN MUTATION ANALYSIS"
[1] 3
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                 6                 51 
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                 6                 51 
[1] "11Q GAIN MUTATION ANALYSIS"
[1] 3
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                 6                 51 
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                 6                 51 
[1] "12P GAIN MUTATION ANALYSIS"
[1] 3
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
                 6                 51 
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
                 6                 51 
[1] "12Q GAIN MUTATION ANALYSIS"
[1] 3
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
                 5                 52 
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
                 5                 52 
[1] "13Q GAIN MUTATION ANALYSIS"
[1] 3
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                 4                 53 
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                 4                 53 
[1] "14Q GAIN MUTATION ANALYSIS"
[1] 3
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
                 7                 50 
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
                 7                 50 
[1] "15Q GAIN MUTATION ANALYSIS"
[1] 3
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                 4                 53 
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                 4                 53 
[1] "16P GAIN MUTATION ANALYSIS"
[1] 3
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
                 6                 51 
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
                 6                 51 
[1] "16Q GAIN MUTATION ANALYSIS"
[1] 3
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                 7                 50 
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                 7                 50 
[1] "17Q GAIN MUTATION ANALYSIS"
[1] 3
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
                 3                 54 
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
                 3                 54 
[1] "18P GAIN MUTATION ANALYSIS"
[1] 3
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                 6                 51 
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                 6                 51 
[1] "19P GAIN MUTATION ANALYSIS"
[1] 3
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                 3                 54 
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                 3                 54 
[1] "19Q GAIN MUTATION ANALYSIS"
[1] 3
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
                 6                 51 
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
                 6                 51 
[1] "20P GAIN MUTATION ANALYSIS"
[1] 3
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
                10                 47 
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
                10                 47 
[1] "20Q GAIN MUTATION ANALYSIS"
[1] 3
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
                11                 46 
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
                11                 46 
[1] "22Q GAIN MUTATION ANALYSIS"
[1] 3
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                 3                 54 
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                 3                 54 
[1] "1P LOSS MUTATION ANALYSIS"
[1] 3
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
                7                50 
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
                7                50 
[1] "2P LOSS MUTATION ANALYSIS"
[1] 3
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
                6                51 
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
                6                51 
[1] "3P LOSS MUTATION ANALYSIS"
[1] 3
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
               11                46 
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
               11                46 
[1] "3Q LOSS MUTATION ANALYSIS"
[1] 3
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
                5                52 
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
                5                52 
[1] "4P LOSS MUTATION ANALYSIS"
[1] 3
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
                6                51 
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
                6                51 
[1] "4Q LOSS MUTATION ANALYSIS"
[1] 3
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
                5                52 
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
                5                52 
[1] "5Q LOSS MUTATION ANALYSIS"
[1] 3
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
                5                52 
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
                5                52 
[1] "6P LOSS MUTATION ANALYSIS"
[1] 3
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
               20                37 
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
               20                37 
[1] "6Q LOSS MUTATION ANALYSIS"
[1] 3
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
               23                34 
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
               23                34 
[1] "8P LOSS MUTATION ANALYSIS"
[1] 3
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
                8                49 
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
                8                49 
[1] "9P LOSS MUTATION ANALYSIS"
[1] 3
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
               22                35 
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
               22                35 
[1] "9Q LOSS MUTATION ANALYSIS"
[1] 3
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
               12                45 
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
               12                45 
[1] "10P LOSS MUTATION ANALYSIS"
[1] 3
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
                10                 47 
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
                10                 47 
[1] "10Q LOSS MUTATION ANALYSIS"
[1] 3
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
                10                 47 
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
                10                 47 
[1] "11P LOSS MUTATION ANALYSIS"
[1] 3
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
                 5                 52 
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
                 5                 52 
[1] "11Q LOSS MUTATION ANALYSIS"
[1] 3
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
                 4                 53 
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
                 4                 53 
[1] "12P LOSS MUTATION ANALYSIS"
[1] 3
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
                 6                 51 
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
                 6                 51 
[1] "12Q LOSS MUTATION ANALYSIS"
[1] 3
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                 7                 50 
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                 7                 50 
[1] "13Q LOSS MUTATION ANALYSIS"
[1] 3
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
                 9                 48 
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
                 9                 48 
[1] "15Q LOSS MUTATION ANALYSIS"
[1] 3
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
                 8                 49 
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
                 8                 49 
[1] "17P LOSS MUTATION ANALYSIS"
[1] 3
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
                20                 37 
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
                20                 37 
[1] "17Q LOSS MUTATION ANALYSIS"
[1] 3
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
                 9                 48 
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
                 9                 48 
[1] "18P LOSS MUTATION ANALYSIS"
[1] 3
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
                21                 36 
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
                21                 36 
[1] "18Q LOSS MUTATION ANALYSIS"
[1] 3
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
                30                 27 
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
                30                 27 
[1] "19P LOSS MUTATION ANALYSIS"
[1] 3
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
                 6                 51 
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
                 6                 51 
[1] "19Q LOSS MUTATION ANALYSIS"
[1] 3
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                 5                 52 
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                 5                 52 
[1] "20P LOSS MUTATION ANALYSIS"
[1] 3
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                 4                 53 
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                 4                 53 
[1] "21Q LOSS MUTATION ANALYSIS"
[1] 3
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
                19                 38 
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
                19                 38 
[1] "22Q LOSS MUTATION ANALYSIS"
[1] 3
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
                 9                 48 
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
                 9                 48 
[1] "XQ LOSS MUTATION ANALYSIS"
[1] 3
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
                3                54 
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
                3                54 
[1] "terrence_modification_tag"
[1] TRUE
[1] "data2feature, selection="
 [1] "YEARSTOBIRTH"                          
 [2] "VITALSTATUS"                           
 [3] "DAYSTODEATH"                           
 [4] "DAYSTOLASTFOLLOWUP"                    
 [5] "PRIMARYSITEOFDESEASE"                  
 [6] "NEOPLASM.DISEASESTAGE"                 
 [7] "PATHOLOGY.T.STAGE"                     
 [8] "PATHOLOGY.N.STAGE"                     
 [9] "PATHOLOGY.M.STAGE"                     
[10] "DCCUPLOADDATE"                         
[11] "GENDER"                                
[12] "DATEOFINITIALPATHOLOGICDIAGNOSIS"      
[13] "RADIATIONTHERAPY"                      
[14] "HISTOLOGICALTYPE"                      
[15] "RADIATIONS.RADIATION.REGIMENINDICATION"
[16] "NUMBERPACKYEARSSMOKED"                 
[17] "YEAROFTOBACCOSMOKINGONSET"             
[18] "COMPLETENESS.OF.RESECTION"             
[19] "NUMBER.OF.LYMPH.NODES"                 
[20] "GLEASON_SCORE"                         
[21] "PSA_VALUE"                             
[22] "DAYS_TO_PSA"                           
[23] "BATCHNUMBER"                           

Input Data has 23 rows and 57 columns.

[1] "Batch" "23"   
[1] "Last Follow UP"
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
          NA          303          360           NA          153          158 
TCGA-FB-A4P5 TCGA-FB-A545 TCGA-H6-8124 TCGA-H6-A45N TCGA-HZ-7289 TCGA-HZ-7918 
           4            1          392          232          239           28 
TCGA-HZ-7919 TCGA-HZ-7920 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
          20           NA            4            8          369          366 
TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 
           8           19           30           21           NA           28 
TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8636 TCGA-HZ-8637 TCGA-HZ-8638 TCGA-HZ-A49G 
          15            3            5           NA           90           23 
TCGA-HZ-A49H TCGA-HZ-A49I TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 
          31           NA          182           46          347           NA 
TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 
          NA           NA           NA           NA          476          851 
TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 
          NA           NA           NA           NA           NA          488 
TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP 
          NA           NA           17          521          329          299 
TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST 
          NA           NA            8 
Variable 1:'AGE':	nDistinctValues=32,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 3:'DAYSTODEATH':	nDistinctValues=19,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'DAYSTOLASTFOLLOWUP':	nDistinctValues=34,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 5:'PRIMARY.SITE.OF.DISEASE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 6:'NEOPLASM.DISEASESTAGE':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'PATHOLOGY.T.STAGE':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'PATHOLOGY.N.STAGE':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'PATHOLOGY.M.STAGE':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'DCCUPLOADDAY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 11:'GENDER':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'DAYOFINITIALPATHOLOGICDIAGNOSIS':	nDistinctValues=6,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 13:'RADIATION.THERAPY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 14:'HISTOLOGICAL.TYPE':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 15:'RADIATIONS.RADIATION.REGIMENINDICATION':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 16:'NUMBERPACKYEARSSMOKED':	nDistinctValues=10,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 17:'YEAROFTOBACCOSMOKINGONSET':	nDistinctValues=11,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 18:'COMPLETENESS.OF.RESECTION':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 19:'NUMBER.OF.LYMPH.NODES':	nDistinctValues=12,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 20:'GLEASON_SCORE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 21:'PSA_VALUE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 22:'DAYS_TO_PSA':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 23:'BATCH.NUMBER':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
 [1] "AGE"                       "NEOPLASM.DISEASESTAGE"    
 [3] "PATHOLOGY.T.STAGE"         "PATHOLOGY.N.STAGE"        
 [5] "PATHOLOGY.M.STAGE"         "GENDER"                   
 [7] "HISTOLOGICAL.TYPE"         "NUMBERPACKYEARSSMOKED"    
 [9] "YEAROFTOBACCOSMOKINGONSET" "COMPLETENESS.OF.RESECTION"
[11] "NUMBER.OF.LYMPH.NODES"    
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T" "3"          
[1] "PATHOLOGY.N" "4"          
Output Data has 57 columns, 1 survival variables, and 11 non-survival variables.
AGE, nv=32, binary=FALSE, numeric=TRUE
NEOPLASM.DISEASESTAGE, nv=6, binary=FALSE, numeric=FALSE
PATHOLOGY.T.STAGE, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.T',vnm)"
vv
T1 T2 T3 T4 
 2  4 49  2 
[1] "table(vv)"
vv
T1+T2 T3+T4 
    6    51 
$ClinVariableName
[1] "PATHOLOGY.T.STAGE"

$Table
vv
T1 T2 T3 T4 
 2  4 49  2 

$ClinVariableType
[1] "binary"

$Class0_nSamples
[1] 6

$Class1_nSamples
[1] 51

$Class0_label
[1] "T1+T2"

$Class1_label
[1] "T3+T4"


T1+T2 T3+T4 
    6    51 
PATHOLOGY.N.STAGE, nv=2, binary=FALSE, numeric=TRUE
PATHOLOGY.M.STAGE, nv=3, binary=FALSE, numeric=FALSE
GENDER, nv=2, binary=FALSE, numeric=FALSE
HISTOLOGICAL.TYPE, nv=3, binary=FALSE, numeric=FALSE
NUMBERPACKYEARSSMOKED, nv=10, binary=FALSE, numeric=TRUE
YEAROFTOBACCOSMOKINGONSET, nv=11, binary=FALSE, numeric=TRUE
COMPLETENESS.OF.RESECTION, nv=3, binary=FALSE, numeric=FALSE
NUMBER.OF.LYMPH.NODES, nv=12, binary=FALSE, numeric=TRUE

Clustering(1) Variable = 1P GAIN MUTATION ANALYSIS
D1V1, survival
                   sevent
clus2                0  1
  1P GAIN MUTATED    1  1
  1P GAIN WILD-TYPE 34 18
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
                2                52 
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
                1                18 
$`1P GAIN MUTATED`
TCGA-HZ-7925 TCGA-IB-7646 
       12.03         4.77 

$`1P GAIN WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.96        11.84         7.07         5.03         5.19 
TCGA-FB-A4P5 TCGA-FB-A545 TCGA-H6-8124 TCGA-H6-A45N TCGA-HZ-7289 TCGA-HZ-7918 
        0.13         0.03        12.89         7.63         7.86         0.92 
TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7926 TCGA-HZ-8001 
        0.66         0.13         0.26        12.13         0.26         0.62 
TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8519 
        0.99         0.69         3.91         0.92         0.49         0.10 
TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK 
        0.16         2.96         0.76         1.02         5.98         1.51 
TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 
       11.41        49.38        21.86        15.35        19.82        15.65 
TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 
       27.98         4.04         3.58        43.79        15.78        19.66 
TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO 
       16.04         3.85        15.95         0.56        17.13        10.82 
TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST 
        9.83         7.20        15.12         0.26 

  1P GAIN MUTATED 1P GAIN WILD-TYPE 
             4.77              0.03 
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
            12.03             49.38 
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
            8.400             5.585 
[1] "4.8 - 12.0 (8.4)" "0.0 - 49.4 (5.6)"
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A545 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-H6-8124        TCGA-H6-A45N        TCGA-HZ-7289        TCGA-HZ-7918 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-HZ-8519        TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-HZ-A49H        TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-IB-7645        TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-IB-7651        TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-IB-7887        TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-IB-7891        TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-IB-8127        TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-IB-A5SS        TCGA-IB-A5ST 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A545 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-H6-8124        TCGA-H6-A45N        TCGA-HZ-7289        TCGA-HZ-7918 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-HZ-8519        TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-HZ-A49H        TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-IB-7645        TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-IB-7651        TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-IB-7887        TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-IB-7891        TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-IB-8127        TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-IB-A5SS        TCGA-IB-A5ST 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A545 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-H6-8124        TCGA-H6-A45N        TCGA-HZ-7289        TCGA-HZ-7918 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-HZ-8519        TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-HZ-A49H        TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-IB-7645        TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-IB-7651        TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-IB-7887        TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-IB-7891        TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-IB-8127        TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-IB-A5SS        TCGA-IB-A5ST 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
[1] "Remove cluster labels:" "1P GAIN MUTATED"       
clus
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
                2                52 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A545 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-H6-8124        TCGA-H6-A45N        TCGA-HZ-7289        TCGA-HZ-7918 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002        TCGA-HZ-8003 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317        TCGA-HZ-8519 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651        TCGA-IB-7652 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887        TCGA-IB-7888 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891        TCGA-IB-7893 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127        TCGA-IB-A5SO 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS        TCGA-IB-A5ST 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
D1V2, continuous
                   vv
clus                STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  1P GAIN MUTATED          0        0         0         3         0        0
  1P GAIN WILD-TYPE        2        3         7        38         2        2
D1V3, multiclass
                   vv
clus                T1+T2 T3+T4
  1P GAIN MUTATED       0     3
  1P GAIN WILD-TYPE     6    48
D1V4, multiclass
       clus
vv      1P GAIN MUTATED 1P GAIN WILD-TYPE
  T1+T2               0                 6
  T3+T4               3                48
D1V5, binary
                   cls
clus                 0  1
  1P GAIN MUTATED    0  3
  1P GAIN WILD-TYPE 14 40
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1P GAIN MUTATED      0    3
  1P GAIN WILD-TYPE   14   40
   clus
vv  1P GAIN MUTATED 1P GAIN WILD-TYPE
  0               0                14
  1               3                40
                   vv
clus                M0 M1 MX
  1P GAIN MUTATED    1  0  2
  1P GAIN WILD-TYPE 31  2 21
D1V6, multiclass
    clus
vv   1P GAIN MUTATED 1P GAIN WILD-TYPE
  M0               1                31
  M1               0                 2
  MX               2                21
D1V7, binary
                   cls
clus                 0  1
  1P GAIN MUTATED    1  2
  1P GAIN WILD-TYPE 30 24
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1P GAIN MUTATED      1    2
  1P GAIN WILD-TYPE   30   24
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  FEMALE               1                30
  MALE                 2                24
                   vv
clus                PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  1P GAIN MUTATED                                     3
  1P GAIN WILD-TYPE                                  48
                   vv
clus                PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  1P GAIN MUTATED                                       0
  1P GAIN WILD-TYPE                                     4
                   vv
clus                PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  1P GAIN MUTATED                                                  0
  1P GAIN WILD-TYPE                                                1
D1V8, multiclass
                                                  clus
vv                                                 1P GAIN MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            3
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               0
                                                  clus
vv                                                 1P GAIN WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                             48
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                            4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                 1
D1V9, continuous
D1V10, continuous
                   vv
clus                R0 R1 RX
  1P GAIN MUTATED    2  1  0
  1P GAIN WILD-TYPE 30 20  2
D1V11, multiclass
    clus
vv   1P GAIN MUTATED 1P GAIN WILD-TYPE
  R0               2                30
  R1               1                20
  RX               0                 2
D1V12, continuous

Clustering(2) Variable = 1Q GAIN MUTATION ANALYSIS
D2V1, survival
                   sevent
clus2                0  1
  1Q GAIN MUTATED    6  5
  1Q GAIN WILD-TYPE 29 14
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
               11                43 
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
                5                14 
$`1Q GAIN MUTATED`
TCGA-F2-A44H TCGA-HZ-7925 TCGA-HZ-8636 TCGA-HZ-A4BH TCGA-IB-7646 TCGA-IB-7651 
        5.19        12.03         0.16         5.98         4.77        19.82 
TCGA-IB-7886 TCGA-IB-7889 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-8127 
        4.04        15.78        16.04         3.85        17.13 

$`1Q GAIN WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-FB-A4P5 
       10.98         9.96        11.84         7.07         5.03         0.13 
TCGA-FB-A545 TCGA-H6-8124 TCGA-H6-A45N TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 
        0.03        12.89         7.63         7.86         0.92         0.66 
TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 
        0.13         0.26        12.13         0.26         0.62         0.99 
TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8638 
        0.69         3.91         0.92         0.49         0.10         2.96 
TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7647 
        0.76         1.02         1.51        11.41        49.38        21.86 
TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7890 
       15.35        15.65        27.98         3.58        43.79        19.66 
TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS 
       15.95         0.56        10.82         9.83         7.20        15.12 
TCGA-IB-A5ST 
        0.26 

  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
             0.16              0.03 
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
            19.82             49.38 
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
             5.98              5.03 
[1] "0.2 - 19.8 (6.0)" "0.0 - 49.4 (5.0)"
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A545 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-H6-8124        TCGA-H6-A45N        TCGA-HZ-7289        TCGA-HZ-7918 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-HZ-8519        TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-HZ-A49H        TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-IB-7645        TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-IB-7651        TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-IB-7887        TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-IB-7891        TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-IB-8127        TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-IB-A5SS        TCGA-IB-A5ST 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A545 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-H6-8124        TCGA-H6-A45N        TCGA-HZ-7289        TCGA-HZ-7918 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-HZ-8519        TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-HZ-A49H        TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-IB-7645        TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-IB-7651        TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-IB-7887        TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-IB-7891        TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-IB-8127        TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-IB-A5SS        TCGA-IB-A5ST 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A545 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-H6-8124        TCGA-H6-A45N        TCGA-HZ-7289        TCGA-HZ-7918 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-HZ-8519        TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-HZ-A49H        TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-IB-7645        TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-IB-7651        TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-IB-7887        TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-IB-7891        TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-IB-8127        TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-IB-A5SS        TCGA-IB-A5ST 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D2V2, continuous
                   vv
clus                STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  1Q GAIN MUTATED          0        0         2         9         0        1
  1Q GAIN WILD-TYPE        2        3         5        32         2        1
D2V3, multiclass
                   vv
clus                T1+T2 T3+T4
  1Q GAIN MUTATED       0    12
  1Q GAIN WILD-TYPE     6    39
D2V4, multiclass
       clus
vv      1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  T1+T2               0                 6
  T3+T4              12                39
D2V5, binary
                   cls
clus                 0  1
  1Q GAIN MUTATED    3  9
  1Q GAIN WILD-TYPE 11 34
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1Q GAIN MUTATED      3    9
  1Q GAIN WILD-TYPE   11   34
   clus
vv  1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  0               3                11
  1               9                34
                   vv
clus                M0 M1 MX
  1Q GAIN MUTATED    8  1  3
  1Q GAIN WILD-TYPE 24  1 20
D2V6, multiclass
    clus
vv   1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  M0               8                24
  M1               1                 1
  MX               3                20
D2V7, binary
                   cls
clus                 0  1
  1Q GAIN MUTATED    4  8
  1Q GAIN WILD-TYPE 27 18
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1Q GAIN MUTATED      4    8
  1Q GAIN WILD-TYPE   27   18
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  FEMALE               4                27
  MALE                 8                18
                   vv
clus                PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  1Q GAIN MUTATED                                    12
  1Q GAIN WILD-TYPE                                  39
                   vv
clus                PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  1Q GAIN MUTATED                                       0
  1Q GAIN WILD-TYPE                                     4
                   vv
clus                PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  1Q GAIN MUTATED                                                  0
  1Q GAIN WILD-TYPE                                                1
D2V8, multiclass
                                                  clus
vv                                                 1Q GAIN MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           12
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               0
                                                  clus
vv                                                 1Q GAIN WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                             39
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                            4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                 1
D2V9, continuous
D2V10, continuous
                   vv
clus                R0 R1 RX
  1Q GAIN MUTATED    7  5  0
  1Q GAIN WILD-TYPE 25 16  2
D2V11, multiclass
    clus
vv   1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  R0               7                25
  R1               5                16
  RX               0                 2
D2V12, continuous

Clustering(3) Variable = 2P GAIN MUTATION ANALYSIS
D3V1, survival
                   sevent
clus2                0  1
  2P GAIN MUTATED    3  3
  2P GAIN WILD-TYPE 32 16
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
                6                48 
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
                3                16 
$`2P GAIN MUTATED`
TCGA-FB-A545 TCGA-IB-7651 TCGA-IB-7886 TCGA-IB-7893 TCGA-IB-8127 TCGA-IB-A5SP 
        0.03        19.82         4.04         3.85        17.13         9.83 

$`2P GAIN WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.96        11.84         7.07         5.03         5.19 
TCGA-FB-A4P5 TCGA-H6-8124 TCGA-H6-A45N TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 
        0.13        12.89         7.63         7.86         0.92         0.66 
TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 
        0.13         0.26        12.13        12.03         0.26         0.62 
TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8519 
        0.99         0.69         3.91         0.92         0.49         0.10 
TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK 
        0.16         2.96         0.76         1.02         5.98         1.51 
TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 
       11.41        49.38         4.77        21.86        15.35        15.65 
TCGA-IB-7885 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 
       27.98         3.58        43.79        15.78        19.66        16.04 
TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-A5SO TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST 
       15.95         0.56        10.82         7.20        15.12         0.26 

  2P GAIN MUTATED 2P GAIN WILD-TYPE 
             0.03              0.10 
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
            19.82             49.38 
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
            6.935             5.585 
[1] "0.0 - 19.8 (6.9)" "0.1 - 49.4 (5.6)"
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A545 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-H6-8124        TCGA-H6-A45N        TCGA-HZ-7289        TCGA-HZ-7918 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-HZ-8519        TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-HZ-A49H        TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-IB-7645        TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-IB-7651        TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-IB-7887        TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-IB-7891        TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-IB-8127        TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-IB-A5SS        TCGA-IB-A5ST 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A545 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-H6-8124        TCGA-H6-A45N        TCGA-HZ-7289        TCGA-HZ-7918 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-HZ-8519        TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-HZ-A49H        TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-IB-7645        TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-IB-7651        TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-IB-7887        TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-IB-7891        TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-IB-8127        TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-IB-A5SS        TCGA-IB-A5ST 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A545 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-H6-8124        TCGA-H6-A45N        TCGA-HZ-7289        TCGA-HZ-7918 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-HZ-8519        TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-HZ-A49H        TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-IB-7645        TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-IB-7651        TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-IB-7887        TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-IB-7891        TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-IB-8127        TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-IB-A5SS        TCGA-IB-A5ST 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
[1] "hr=" "1.3"
D3V2, continuous
                   vv
clus                STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  2P GAIN MUTATED          0        0         2         4         0        0
  2P GAIN WILD-TYPE        2        3         5        37         2        2
D3V3, multiclass
                   vv
clus                T1+T2 T3+T4
  2P GAIN MUTATED       0     6
  2P GAIN WILD-TYPE     6    45
D3V4, multiclass
       clus
vv      2P GAIN MUTATED 2P GAIN WILD-TYPE
  T1+T2               0                 6
  T3+T4               6                45
D3V5, binary
                   cls
clus                 0  1
  2P GAIN MUTATED    2  4
  2P GAIN WILD-TYPE 12 39
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2P GAIN MUTATED      2    4
  2P GAIN WILD-TYPE   12   39
   clus
vv  2P GAIN MUTATED 2P GAIN WILD-TYPE
  0               2                12
  1               4                39
                   vv
clus                M0 M1 MX
  2P GAIN MUTATED    6  0  0
  2P GAIN WILD-TYPE 26  2 23
D3V6, multiclass
    clus
vv   2P GAIN MUTATED 2P GAIN WILD-TYPE
  M0               6                26
  M1               0                 2
  MX               0                23
D3V7, binary
                   cls
clus                 0  1
  2P GAIN MUTATED    2  4
  2P GAIN WILD-TYPE 29 22
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2P GAIN MUTATED      2    4
  2P GAIN WILD-TYPE   29   22
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  FEMALE               2                29
  MALE                 4                22
                   vv
clus                PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  2P GAIN MUTATED                                     6
  2P GAIN WILD-TYPE                                  45
                   vv
clus                PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  2P GAIN MUTATED                                       0
  2P GAIN WILD-TYPE                                     4
                   vv
clus                PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  2P GAIN MUTATED                                                  0
  2P GAIN WILD-TYPE                                                1
D3V8, multiclass
                                                  clus
vv                                                 2P GAIN MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            6
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               0
                                                  clus
vv                                                 2P GAIN WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                             45
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                            4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                 1
D3V9, continuous
D3V10, continuous
                   vv
clus                R0 R1 RX
  2P GAIN MUTATED    2  3  0
  2P GAIN WILD-TYPE 30 18  2
D3V11, multiclass
    clus
vv   2P GAIN MUTATED 2P GAIN WILD-TYPE
  R0               2                30
  R1               3                18
  RX               0                 2
D3V12, continuous

Clustering(4) Variable = 2Q GAIN MUTATION ANALYSIS
D4V1, survival
                   sevent
clus2                0  1
  2Q GAIN MUTATED    3  4
  2Q GAIN WILD-TYPE 32 15
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
                7                47 
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
                4                15 
$`2Q GAIN MUTATED`
TCGA-FB-A545 TCGA-IB-7646 TCGA-IB-7651 TCGA-IB-7886 TCGA-IB-7893 TCGA-IB-8127 
        0.03         4.77        19.82         4.04         3.85        17.13 
TCGA-IB-A5SP 
        9.83 

$`2Q GAIN WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.96        11.84         7.07         5.03         5.19 
TCGA-FB-A4P5 TCGA-H6-8124 TCGA-H6-A45N TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 
        0.13        12.89         7.63         7.86         0.92         0.66 
TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 
        0.13         0.26        12.13        12.03         0.26         0.62 
TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8519 
        0.99         0.69         3.91         0.92         0.49         0.10 
TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK 
        0.16         2.96         0.76         1.02         5.98         1.51 
TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 
       11.41        49.38        21.86        15.35        15.65        27.98 
TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7897 
        3.58        43.79        15.78        19.66        16.04        15.95 
TCGA-IB-8126 TCGA-IB-A5SO TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST 
        0.56        10.82         7.20        15.12         0.26 

  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
             0.03              0.10 
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
            19.82             49.38 
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
             4.77              5.98 
[1] "0.0 - 19.8 (4.8)" "0.1 - 49.4 (6.0)"
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A545 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-H6-8124        TCGA-H6-A45N        TCGA-HZ-7289        TCGA-HZ-7918 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-HZ-8519        TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-HZ-A49H        TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-IB-7645        TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-IB-7651        TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-IB-7887        TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-IB-7891        TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-IB-8127        TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-IB-A5SS        TCGA-IB-A5ST 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A545 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-H6-8124        TCGA-H6-A45N        TCGA-HZ-7289        TCGA-HZ-7918 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-HZ-8519        TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-HZ-A49H        TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-IB-7645        TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-IB-7651        TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-IB-7887        TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-IB-7891        TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-IB-8127        TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-IB-A5SS        TCGA-IB-A5ST 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A545 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-H6-8124        TCGA-H6-A45N        TCGA-HZ-7289        TCGA-HZ-7918 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-HZ-8519        TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-HZ-A49H        TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-IB-7645        TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-IB-7651        TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-IB-7887        TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-IB-7891        TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-IB-8127        TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-IB-A5SS        TCGA-IB-A5ST 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
[1] "hr=" "1.8"
D4V2, continuous
                   vv
clus                STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  2Q GAIN MUTATED          0        0         2         5         0        0
  2Q GAIN WILD-TYPE        2        3         5        36         2        2
D4V3, multiclass
                   vv
clus                T1+T2 T3+T4
  2Q GAIN MUTATED       0     7
  2Q GAIN WILD-TYPE     6    44
D4V4, multiclass
       clus
vv      2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  T1+T2               0                 6
  T3+T4               7                44
D4V5, binary
                   cls
clus                 0  1
  2Q GAIN MUTATED    2  5
  2Q GAIN WILD-TYPE 12 38
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2Q GAIN MUTATED      2    5
  2Q GAIN WILD-TYPE   12   38
   clus
vv  2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  0               2                12
  1               5                38
                   vv
clus                M0 M1 MX
  2Q GAIN MUTATED    7  0  0
  2Q GAIN WILD-TYPE 25  2 23
D4V6, multiclass
    clus
vv   2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  M0               7                25
  M1               0                 2
  MX               0                23
D4V7, binary
                   cls
clus                 0  1
  2Q GAIN MUTATED    2  5
  2Q GAIN WILD-TYPE 29 21
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2Q GAIN MUTATED      2    5
  2Q GAIN WILD-TYPE   29   21
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  FEMALE               2                29
  MALE                 5                21
                   vv
clus                PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  2Q GAIN MUTATED                                     7
  2Q GAIN WILD-TYPE                                  44
                   vv
clus                PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  2Q GAIN MUTATED                                       0
  2Q GAIN WILD-TYPE                                     4
                   vv
clus                PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  2Q GAIN MUTATED                                                  0
  2Q GAIN WILD-TYPE                                                1
D4V8, multiclass
                                                  clus
vv                                                 2Q GAIN MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            7
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               0
                                                  clus
vv                                                 2Q GAIN WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                             44
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                            4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                 1
D4V9, continuous
D4V10, continuous
                   vv
clus                R0 R1 RX
  2Q GAIN MUTATED    2  4  0
  2Q GAIN WILD-TYPE 30 17  2
D4V11, multiclass
    clus
vv   2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  R0               2                30
  R1               4                17
  RX               0                 2
D4V12, continuous

Clustering(5) Variable = 3P GAIN MUTATION ANALYSIS
D5V1, survival
                   sevent
clus2                0  1
  3P GAIN MUTATED    1  2
  3P GAIN WILD-TYPE 34 17
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
                3                51 
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
                2                17 
$`3P GAIN MUTATED`
TCGA-HZ-7922 TCGA-IB-7646 TCGA-IB-7893 
        0.13         4.77         3.85 

$`3P GAIN WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.96        11.84         7.07         5.03         5.19 
TCGA-FB-A4P5 TCGA-FB-A545 TCGA-H6-8124 TCGA-H6-A45N TCGA-HZ-7289 TCGA-HZ-7918 
        0.13         0.03        12.89         7.63         7.86         0.92 
TCGA-HZ-7919 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 
        0.66         0.26        12.13        12.03         0.26         0.62 
TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8519 
        0.99         0.69         3.91         0.92         0.49         0.10 
TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK 
        0.16         2.96         0.76         1.02         5.98         1.51 
TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 
       11.41        49.38        21.86        15.35        19.82        15.65 
TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 
       27.98         4.04         3.58        43.79        15.78        19.66 
TCGA-IB-7891 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP 
       16.04        15.95         0.56        17.13        10.82         9.83 
TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST 
        7.20        15.12         0.26 

  3P GAIN MUTATED 3P GAIN WILD-TYPE 
             0.13              0.03 
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
             4.77             49.38 
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
             3.85              7.07 
[1] "0.1 - 4.8 (3.9)"  "0.0 - 49.4 (7.1)"
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A545 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-H6-8124        TCGA-H6-A45N        TCGA-HZ-7289        TCGA-HZ-7918 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-HZ-8519        TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-HZ-A49H        TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-IB-7645        TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-IB-7651        TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-IB-7887        TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-IB-7891        TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-IB-8127        TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-IB-A5SS        TCGA-IB-A5ST 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A545 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-H6-8124        TCGA-H6-A45N        TCGA-HZ-7289        TCGA-HZ-7918 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-HZ-8519        TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-HZ-A49H        TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-IB-7645        TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-IB-7651        TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-IB-7887        TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-IB-7891        TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-IB-8127        TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-IB-A5SS        TCGA-IB-A5ST 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A545 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-H6-8124        TCGA-H6-A45N        TCGA-HZ-7289        TCGA-HZ-7918 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-HZ-8519        TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-HZ-A49H        TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-IB-7645        TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-IB-7651        TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-IB-7887        TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-IB-7891        TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-IB-8127        TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-IB-A5SS        TCGA-IB-A5ST 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
[1] "hr=" "15" 
D5V2, continuous
                   vv
clus                STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  3P GAIN MUTATED          0        0         1         2         0        0
  3P GAIN WILD-TYPE        2        3         6        39         2        2
D5V3, multiclass
                   vv
clus                T1+T2 T3+T4
  3P GAIN MUTATED       0     3
  3P GAIN WILD-TYPE     6    48
D5V4, multiclass
       clus
vv      3P GAIN MUTATED 3P GAIN WILD-TYPE
  T1+T2               0                 6
  T3+T4               3                48
D5V5, binary
                   cls
clus                 0  1
  3P GAIN MUTATED    1  2
  3P GAIN WILD-TYPE 13 41
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3P GAIN MUTATED      1    2
  3P GAIN WILD-TYPE   13   41
   clus
vv  3P GAIN MUTATED 3P GAIN WILD-TYPE
  0               1                13
  1               2                41
                   vv
clus                M0 M1 MX
  3P GAIN MUTATED    2  0  1
  3P GAIN WILD-TYPE 30  2 22
D5V6, multiclass
    clus
vv   3P GAIN MUTATED 3P GAIN WILD-TYPE
  M0               2                30
  M1               0                 2
  MX               1                22
D5V7, binary
                   cls
clus                 0  1
  3P GAIN MUTATED    1  2
  3P GAIN WILD-TYPE 30 24
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3P GAIN MUTATED      1    2
  3P GAIN WILD-TYPE   30   24
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  FEMALE               1                30
  MALE                 2                24
                   vv
clus                PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  3P GAIN MUTATED                                     3
  3P GAIN WILD-TYPE                                  48
                   vv
clus                PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  3P GAIN MUTATED                                       0
  3P GAIN WILD-TYPE                                     4
                   vv
clus                PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  3P GAIN MUTATED                                                  0
  3P GAIN WILD-TYPE                                                1
D5V8, multiclass
                                                  clus
vv                                                 3P GAIN MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            3
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               0
                                                  clus
vv                                                 3P GAIN WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                             48
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                            4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                 1
D5V9, continuous
D5V10, continuous
                   vv
clus                R0 R1 RX
  3P GAIN MUTATED    2  1  0
  3P GAIN WILD-TYPE 30 20  2
D5V11, multiclass
    clus
vv   3P GAIN MUTATED 3P GAIN WILD-TYPE
  R0               2                30
  R1               1                20
  RX               0                 2
D5V12, continuous

Clustering(6) Variable = 3Q GAIN MUTATION ANALYSIS
D6V1, survival
                   sevent
clus2                0  1
  3Q GAIN MUTATED    2  5
  3Q GAIN WILD-TYPE 33 14
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
                7                47 
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
                5                14 
$`3Q GAIN MUTATED`
TCGA-HZ-7922 TCGA-HZ-8005 TCGA-HZ-8636 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7890 
        0.13         3.91         0.16         4.77        21.86        19.66 
TCGA-IB-7893 
        3.85 

$`3Q GAIN WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.96        11.84         7.07         5.03         5.19 
TCGA-FB-A4P5 TCGA-FB-A545 TCGA-H6-8124 TCGA-H6-A45N TCGA-HZ-7289 TCGA-HZ-7918 
        0.13         0.03        12.89         7.63         7.86         0.92 
TCGA-HZ-7919 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 
        0.66         0.26        12.13        12.03         0.26         0.62 
TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8638 
        0.99         0.69         0.92         0.49         0.10         2.96 
TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 
        0.76         1.02         5.98         1.51        11.41        49.38 
TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 
       15.35        19.82        15.65        27.98         4.04         3.58 
TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7891 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 
       43.79        15.78        16.04        15.95         0.56        17.13 
TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST 
       10.82         9.83         7.20        15.12         0.26 

  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
             0.13              0.03 
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
            21.86             49.38 
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
             3.91              7.07 
[1] "0.1 - 21.9 (3.9)" "0.0 - 49.4 (7.1)"
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A545 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-H6-8124        TCGA-H6-A45N        TCGA-HZ-7289        TCGA-HZ-7918 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-HZ-8519        TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-HZ-A49H        TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-IB-7645        TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-IB-7651        TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-IB-7887        TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-IB-7891        TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-IB-8127        TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-IB-A5SS        TCGA-IB-A5ST 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A545 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-H6-8124        TCGA-H6-A45N        TCGA-HZ-7289        TCGA-HZ-7918 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-HZ-8519        TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-HZ-A49H        TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-IB-7645        TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-IB-7651        TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-IB-7887        TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-IB-7891        TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-IB-8127        TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-IB-A5SS        TCGA-IB-A5ST 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A545 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-H6-8124        TCGA-H6-A45N        TCGA-HZ-7289        TCGA-HZ-7918 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-HZ-8519        TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-HZ-A49H        TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-IB-7645        TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-IB-7651        TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-IB-7887        TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-IB-7891        TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-IB-8127        TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-IB-A5SS        TCGA-IB-A5ST 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
[1] "hr=" "2.4"
D6V2, continuous
                   vv
clus                STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  3Q GAIN MUTATED          0        1         1         4         0        1
  3Q GAIN WILD-TYPE        2        2         6        37         2        1
D6V3, multiclass
                   vv
clus                T1+T2 T3+T4
  3Q GAIN MUTATED       1     6
  3Q GAIN WILD-TYPE     5    45
D6V4, multiclass
       clus
vv      3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  T1+T2               1                 5
  T3+T4               6                45
D6V5, binary
                   cls
clus                 0  1
  3Q GAIN MUTATED    3  4
  3Q GAIN WILD-TYPE 11 39
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3Q GAIN MUTATED      3    4
  3Q GAIN WILD-TYPE   11   39
   clus
vv  3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  0               3                11
  1               4                39
                   vv
clus                M0 M1 MX
  3Q GAIN MUTATED    4  1  2
  3Q GAIN WILD-TYPE 28  1 21
D6V6, multiclass
    clus
vv   3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  M0               4                28
  M1               1                 1
  MX               2                21
D6V7, binary
                   cls
clus                 0  1
  3Q GAIN MUTATED    3  4
  3Q GAIN WILD-TYPE 28 22
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3Q GAIN MUTATED      3    4
  3Q GAIN WILD-TYPE   28   22
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  FEMALE               3                28
  MALE                 4                22
                   vv
clus                PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  3Q GAIN MUTATED                                     7
  3Q GAIN WILD-TYPE                                  44
                   vv
clus                PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  3Q GAIN MUTATED                                       0
  3Q GAIN WILD-TYPE                                     4
                   vv
clus                PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  3Q GAIN MUTATED                                                  0
  3Q GAIN WILD-TYPE                                                1
D6V8, multiclass
                                                  clus
vv                                                 3Q GAIN MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            7
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               0
                                                  clus
vv                                                 3Q GAIN WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                             44
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                            4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                 1
D6V9, continuous
D6V10, continuous
                   vv
clus                R0 R1 RX
  3Q GAIN MUTATED    3  4  0
  3Q GAIN WILD-TYPE 29 17  2
D6V11, multiclass
    clus
vv   3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  R0               3                29
  R1               4                17
  RX               0                 2
D6V12, continuous

Clustering(7) Variable = 4P GAIN MUTATION ANALYSIS
D7V1, survival
                   sevent
clus2                0  1
  4P GAIN MUTATED    2  0
  4P GAIN WILD-TYPE 33 19
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
                2                52 
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
                0                19 
$`4P GAIN MUTATED`
TCGA-HZ-7922 TCGA-HZ-8636 
        0.13         0.16 

$`4P GAIN WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.96        11.84         7.07         5.03         5.19 
TCGA-FB-A4P5 TCGA-FB-A545 TCGA-H6-8124 TCGA-H6-A45N TCGA-HZ-7289 TCGA-HZ-7918 
        0.13         0.03        12.89         7.63         7.86         0.92 
TCGA-HZ-7919 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 
        0.66         0.26        12.13        12.03         0.26         0.62 
TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8519 
        0.99         0.69         3.91         0.92         0.49         0.10 
TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 
        2.96         0.76         1.02         5.98         1.51        11.41 
TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 
       49.38         4.77        21.86        15.35        19.82        15.65 
TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 
       27.98         4.04         3.58        43.79        15.78        19.66 
TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO 
       16.04         3.85        15.95         0.56        17.13        10.82 
TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST 
        9.83         7.20        15.12         0.26 

  4P GAIN MUTATED 4P GAIN WILD-TYPE 
             0.13              0.03 
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
             0.16             49.38 
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
            0.145             6.525 
[1] "0.1 - 0.2 (0.1)"  "0.0 - 49.4 (6.5)"
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A545 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-H6-8124        TCGA-H6-A45N        TCGA-HZ-7289        TCGA-HZ-7918 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-HZ-8519        TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-HZ-A49H        TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-IB-7645        TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-IB-7651        TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-IB-7887        TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-IB-7891        TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-IB-8127        TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-IB-A5SS        TCGA-IB-A5ST 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A545 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-H6-8124        TCGA-H6-A45N        TCGA-HZ-7289        TCGA-HZ-7918 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-HZ-8519        TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-HZ-A49H        TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-IB-7645        TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-IB-7651        TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-IB-7887        TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-IB-7891        TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-IB-8127        TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-IB-A5SS        TCGA-IB-A5ST 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A545 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-H6-8124        TCGA-H6-A45N        TCGA-HZ-7289        TCGA-HZ-7918 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-HZ-8519        TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-HZ-A49H        TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-IB-7645        TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-IB-7651        TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-IB-7887        TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-IB-7891        TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-IB-8127        TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-IB-A5SS        TCGA-IB-A5ST 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
[1] "Remove cluster labels:" "4P GAIN MUTATED"       
clus
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
                2                52 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A545 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-H6-8124        TCGA-H6-A45N        TCGA-HZ-7289        TCGA-HZ-7918 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7923        TCGA-HZ-7924        TCGA-HZ-7925 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002        TCGA-HZ-8003 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317        TCGA-HZ-8519 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H        TCGA-HZ-A4BH 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645        TCGA-IB-7646 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651        TCGA-IB-7652 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887        TCGA-IB-7888 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891        TCGA-IB-7893 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127        TCGA-IB-A5SO 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS        TCGA-IB-A5ST 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
D7V2, continuous
                   vv
clus                STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  4P GAIN MUTATED          0        0         0         2         0        1
  4P GAIN WILD-TYPE        2        3         7        39         2        1
D7V3, multiclass
                   vv
clus                T1+T2 T3+T4
  4P GAIN MUTATED       0     3
  4P GAIN WILD-TYPE     6    48
D7V4, multiclass
       clus
vv      4P GAIN MUTATED 4P GAIN WILD-TYPE
  T1+T2               0                 6
  T3+T4               3                48
D7V5, binary
                   cls
clus                 0  1
  4P GAIN MUTATED    1  2
  4P GAIN WILD-TYPE 13 41
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4P GAIN MUTATED      1    2
  4P GAIN WILD-TYPE   13   41
   clus
vv  4P GAIN MUTATED 4P GAIN WILD-TYPE
  0               1                13
  1               2                41
                   vv
clus                M0 M1 MX
  4P GAIN MUTATED    0  1  2
  4P GAIN WILD-TYPE 32  1 21
D7V6, multiclass
    clus
vv   4P GAIN MUTATED 4P GAIN WILD-TYPE
  M0               0                32
  M1               1                 1
  MX               2                21
D7V7, binary
                   cls
clus                 0  1
  4P GAIN MUTATED    3  0
  4P GAIN WILD-TYPE 28 26
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4P GAIN MUTATED      3    0
  4P GAIN WILD-TYPE   28   26
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  FEMALE               3                28
  MALE                 0                26
                   vv
clus                PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  4P GAIN MUTATED                                     3
  4P GAIN WILD-TYPE                                  48
                   vv
clus                PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  4P GAIN MUTATED                                       0
  4P GAIN WILD-TYPE                                     4
                   vv
clus                PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  4P GAIN MUTATED                                                  0
  4P GAIN WILD-TYPE                                                1
D7V8, multiclass
                                                  clus
vv                                                 4P GAIN MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            3
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               0
                                                  clus
vv                                                 4P GAIN WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                             48
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                            4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                 1
D7V9, continuous
D7V10, continuous
                   vv
clus                R0 R1 RX
  4P GAIN MUTATED    2  1  0
  4P GAIN WILD-TYPE 30 20  2
D7V11, multiclass
    clus
vv   4P GAIN MUTATED 4P GAIN WILD-TYPE
  R0               2                30
  R1               1                20
  RX               0                 2
D7V12, continuous

Clustering(8) Variable = 4Q GAIN MUTATION ANALYSIS
D8V1, survival
                   sevent
clus2                0  1
  4Q GAIN MUTATED    2  0
  4Q GAIN WILD-TYPE 33 19
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
                2                52 
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
                0                19 
$`4Q GAIN MUTATED`
TCGA-HZ-7922 TCGA-HZ-8636 
        0.13         0.16 

$`4Q GAIN WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.96        11.84         7.07         5.03         5.19 
TCGA-FB-A4P5 TCGA-FB-A545 TCGA-H6-8124 TCGA-H6-A45N TCGA-HZ-7289 TCGA-HZ-7918 
        0.13         0.03        12.89         7.63         7.86         0.92 
TCGA-HZ-7919 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 
        0.66         0.26        12.13        12.03         0.26         0.62 
TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8519 
        0.99         0.69         3.91         0.92         0.49         0.10 
TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 
        2.96         0.76         1.02         5.98         1.51        11.41 
TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 
       49.38         4.77        21.86        15.35        19.82        15.65 
TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 
       27.98         4.04         3.58        43.79        15.78        19.66 
TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO 
       16.04         3.85        15.95         0.56        17.13        10.82 
TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST 
        9.83         7.20        15.12         0.26 

  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
             0.13              0.03 
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
             0.16             49.38 
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
            0.145             6.525 
[1] "0.1 - 0.2 (0.1)"  "0.0 - 49.4 (6.5)"
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A545 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-H6-8124        TCGA-H6-A45N        TCGA-HZ-7289        TCGA-HZ-7918 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-HZ-8519        TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-HZ-A49H        TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-IB-7645        TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-IB-7651        TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-IB-7887        TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-IB-7891        TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-IB-8127        TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-IB-A5SS        TCGA-IB-A5ST 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A545 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-H6-8124        TCGA-H6-A45N        TCGA-HZ-7289        TCGA-HZ-7918 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-HZ-8519        TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-HZ-A49H        TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-IB-7645        TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-IB-7651        TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-IB-7887        TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-IB-7891        TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-IB-8127        TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-IB-A5SS        TCGA-IB-A5ST 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A545 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-H6-8124        TCGA-H6-A45N        TCGA-HZ-7289        TCGA-HZ-7918 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-HZ-8519        TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-HZ-A49H        TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-IB-7645        TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-IB-7651        TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-IB-7887        TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-IB-7891        TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-IB-8127        TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-IB-A5SS        TCGA-IB-A5ST 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
[1] "Remove cluster labels:" "4Q GAIN MUTATED"       
clus
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
                2                52 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A545 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-H6-8124        TCGA-H6-A45N        TCGA-HZ-7289        TCGA-HZ-7918 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7923        TCGA-HZ-7924        TCGA-HZ-7925 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002        TCGA-HZ-8003 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317        TCGA-HZ-8519 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H        TCGA-HZ-A4BH 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645        TCGA-IB-7646 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651        TCGA-IB-7652 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887        TCGA-IB-7888 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891        TCGA-IB-7893 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127        TCGA-IB-A5SO 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-IB-A5SP        TCGA-IB-A5SQ        TCGA-IB-A5SS        TCGA-IB-A5ST 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
D8V2, continuous
                   vv
clus                STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  4Q GAIN MUTATED          0        0         0         2         0        1
  4Q GAIN WILD-TYPE        2        3         7        39         2        1
D8V3, multiclass
                   vv
clus                T1+T2 T3+T4
  4Q GAIN MUTATED       0     3
  4Q GAIN WILD-TYPE     6    48
D8V4, multiclass
       clus
vv      4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  T1+T2               0                 6
  T3+T4               3                48
D8V5, binary
                   cls
clus                 0  1
  4Q GAIN MUTATED    1  2
  4Q GAIN WILD-TYPE 13 41
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4Q GAIN MUTATED      1    2
  4Q GAIN WILD-TYPE   13   41
   clus
vv  4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  0               1                13
  1               2                41
                   vv
clus                M0 M1 MX
  4Q GAIN MUTATED    0  1  2
  4Q GAIN WILD-TYPE 32  1 21
D8V6, multiclass
    clus
vv   4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  M0               0                32
  M1               1                 1
  MX               2                21
D8V7, binary
                   cls
clus                 0  1
  4Q GAIN MUTATED    3  0
  4Q GAIN WILD-TYPE 28 26
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4Q GAIN MUTATED      3    0
  4Q GAIN WILD-TYPE   28   26
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  FEMALE               3                28
  MALE                 0                26
                   vv
clus                PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  4Q GAIN MUTATED                                     3
  4Q GAIN WILD-TYPE                                  48
                   vv
clus                PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  4Q GAIN MUTATED                                       0
  4Q GAIN WILD-TYPE                                     4
                   vv
clus                PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  4Q GAIN MUTATED                                                  0
  4Q GAIN WILD-TYPE                                                1
D8V8, multiclass
                                                  clus
vv                                                 4Q GAIN MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            3
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               0
                                                  clus
vv                                                 4Q GAIN WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                             48
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                            4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                 1
D8V9, continuous
D8V10, continuous
                   vv
clus                R0 R1 RX
  4Q GAIN MUTATED    2  1  0
  4Q GAIN WILD-TYPE 30 20  2
D8V11, multiclass
    clus
vv   4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  R0               2                30
  R1               1                20
  RX               0                 2
D8V12, continuous

Clustering(9) Variable = 5P GAIN MUTATION ANALYSIS
D9V1, survival
                   sevent
clus2                0  1
  5P GAIN MUTATED    3  1
  5P GAIN WILD-TYPE 32 18
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
                4                50 
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
                1                18 
$`5P GAIN MUTATED`
TCGA-HZ-7289 TCGA-HZ-7922 TCGA-IB-7886 TCGA-IB-A5SP 
        7.86         0.13         4.04         9.83 

$`5P GAIN WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.96        11.84         7.07         5.03         5.19 
TCGA-FB-A4P5 TCGA-FB-A545 TCGA-H6-8124 TCGA-H6-A45N TCGA-HZ-7918 TCGA-HZ-7919 
        0.13         0.03        12.89         7.63         0.92         0.66 
TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 
        0.26        12.13        12.03         0.26         0.62         0.99 
TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8636 
        0.69         3.91         0.92         0.49         0.10         0.16 
TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 
        2.96         0.76         1.02         5.98         1.51        11.41 
TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 
       49.38         4.77        21.86        15.35        19.82        15.65 
TCGA-IB-7885 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 
       27.98         3.58        43.79        15.78        19.66        16.04 
TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SQ 
        3.85        15.95         0.56        17.13        10.82         7.20 
TCGA-IB-A5SS TCGA-IB-A5ST 
       15.12         0.26 

  5P GAIN MUTATED 5P GAIN WILD-TYPE 
             0.13              0.03 
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
             9.83             49.38 
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
            5.950             5.585 
[1] "0.1 - 9.8 (6.0)"  "0.0 - 49.4 (5.6)"
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A545 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-H6-8124        TCGA-H6-A45N        TCGA-HZ-7289        TCGA-HZ-7918 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-HZ-8519        TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-HZ-A49H        TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-IB-7645        TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-IB-7651        TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-IB-7887        TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-IB-7891        TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-IB-8127        TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-IB-A5SS        TCGA-IB-A5ST 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A545 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-H6-8124        TCGA-H6-A45N        TCGA-HZ-7289        TCGA-HZ-7918 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-HZ-8519        TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-HZ-A49H        TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-IB-7645        TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-IB-7651        TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-IB-7887        TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-IB-7891        TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-IB-8127        TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-IB-A5SS        TCGA-IB-A5ST 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A545 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-H6-8124        TCGA-H6-A45N        TCGA-HZ-7289        TCGA-HZ-7918 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-HZ-8519        TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-HZ-A49H        TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-IB-7645        TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-IB-7651        TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-IB-7887        TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-IB-7891        TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-IB-8127        TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-IB-A5SS        TCGA-IB-A5ST 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
[1] "hr=" "1.5"
D9V2, continuous
                   vv
clus                STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  5P GAIN MUTATED          0        0         1         4         0        0
  5P GAIN WILD-TYPE        2        3         6        37         2        2
D9V3, multiclass
                   vv
clus                T1+T2 T3+T4
  5P GAIN MUTATED       0     5
  5P GAIN WILD-TYPE     6    46
D9V4, multiclass
       clus
vv      5P GAIN MUTATED 5P GAIN WILD-TYPE
  T1+T2               0                 6
  T3+T4               5                46
D9V5, binary
                   cls
clus                 0  1
  5P GAIN MUTATED    1  4
  5P GAIN WILD-TYPE 13 39
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5P GAIN MUTATED      1    4
  5P GAIN WILD-TYPE   13   39
   clus
vv  5P GAIN MUTATED 5P GAIN WILD-TYPE
  0               1                13
  1               4                39
                   vv
clus                M0 M1 MX
  5P GAIN MUTATED    2  0  3
  5P GAIN WILD-TYPE 30  2 20
D9V6, multiclass
    clus
vv   5P GAIN MUTATED 5P GAIN WILD-TYPE
  M0               2                30
  M1               0                 2
  MX               3                20
D9V7, binary
                   cls
clus                 0  1
  5P GAIN MUTATED    2  3
  5P GAIN WILD-TYPE 29 23
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5P GAIN MUTATED      2    3
  5P GAIN WILD-TYPE   29   23
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  FEMALE               2                29
  MALE                 3                23
                   vv
clus                PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  5P GAIN MUTATED                                     4
  5P GAIN WILD-TYPE                                  47
                   vv
clus                PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  5P GAIN MUTATED                                       1
  5P GAIN WILD-TYPE                                     3
                   vv
clus                PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  5P GAIN MUTATED                                                  0
  5P GAIN WILD-TYPE                                                1
D9V8, multiclass
                                                  clus
vv                                                 5P GAIN MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            4
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               0
                                                  clus
vv                                                 5P GAIN WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                             47
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                            3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                 1
D9V9, continuous
[1] "Remove cluster labels:" "5P GAIN MUTATED"       
clus
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
                1                13 
       TCGA-F2-6880        TCGA-FB-A4P5        TCGA-H6-8124        TCGA-H6-A45N 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-IB-7644        TCGA-IB-7649        TCGA-IB-7651        TCGA-IB-7885 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-IB-7887        TCGA-IB-7891        TCGA-IB-8126        TCGA-IB-8127 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-IB-A5SS 
"5P GAIN WILD-TYPE" 
D9V10, continuous
[1] "Remove cluster labels:" "5P GAIN MUTATED"       
clus
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
                1                10 
       TCGA-FB-A4P5        TCGA-H6-8124        TCGA-IB-7644        TCGA-IB-7649 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-IB-7651        TCGA-IB-7885        TCGA-IB-7891        TCGA-IB-8126 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-IB-8127        TCGA-IB-A5SS 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
                   vv
clus                R0 R1 RX
  5P GAIN MUTATED    2  2  1
  5P GAIN WILD-TYPE 30 19  1
D9V11, multiclass
    clus
vv   5P GAIN MUTATED 5P GAIN WILD-TYPE
  R0               2                30
  R1               2                19
  RX               1                 1
D9V12, continuous

Clustering(10) Variable = 5Q GAIN MUTATION ANALYSIS
D10V1, survival
                   sevent
clus2                0  1
  5Q GAIN MUTATED    1  1
  5Q GAIN WILD-TYPE 34 18
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
                2                52 
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
                1                18 
$`5Q GAIN MUTATED`
TCGA-IB-7886 TCGA-IB-A5SP 
        4.04         9.83 

$`5Q GAIN WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.96        11.84         7.07         5.03         5.19 
TCGA-FB-A4P5 TCGA-FB-A545 TCGA-H6-8124 TCGA-H6-A45N TCGA-HZ-7289 TCGA-HZ-7918 
        0.13         0.03        12.89         7.63         7.86         0.92 
TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 
        0.66         0.13         0.26        12.13        12.03         0.26 
TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 
        0.62         0.99         0.69         3.91         0.92         0.49 
TCGA-HZ-8519 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH 
        0.10         0.16         2.96         0.76         1.02         5.98 
TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 
        1.51        11.41        49.38         4.77        21.86        15.35 
TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 
       19.82        15.65        27.98         3.58        43.79        15.78 
TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 
       19.66        16.04         3.85        15.95         0.56        17.13 
TCGA-IB-A5SO TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST 
       10.82         7.20        15.12         0.26 

  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
             4.04              0.03 
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
             9.83             49.38 
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
            6.935             5.585 
[1] "4.0 - 9.8 (6.9)"  "0.0 - 49.4 (5.6)"
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A545 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-H6-8124        TCGA-H6-A45N        TCGA-HZ-7289        TCGA-HZ-7918 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-HZ-8519        TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-HZ-A49H        TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-IB-7645        TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-IB-7651        TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-IB-7887        TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-IB-7891        TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-IB-8127        TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-IB-A5SS        TCGA-IB-A5ST 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A545 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-H6-8124        TCGA-H6-A45N        TCGA-HZ-7289        TCGA-HZ-7918 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-HZ-8519        TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-HZ-A49H        TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-IB-7645        TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-IB-7651        TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-IB-7887        TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-IB-7891        TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-IB-8127        TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-IB-A5SS        TCGA-IB-A5ST 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A545 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-H6-8124        TCGA-H6-A45N        TCGA-HZ-7289        TCGA-HZ-7918 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-HZ-8519        TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-HZ-A49H        TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-IB-7645        TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-IB-7651        TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-IB-7887        TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-IB-7891        TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-IB-8127        TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-IB-A5SS        TCGA-IB-A5ST 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
[1] "Remove cluster labels:" "5Q GAIN MUTATED"       
clus
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
                2                52 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A545 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-H6-8124        TCGA-H6-A45N        TCGA-HZ-7289        TCGA-HZ-7918 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-HZ-8519        TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-HZ-A49H        TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-IB-7645        TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-IB-7651        TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7887 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-IB-A5SO        TCGA-IB-A5SQ        TCGA-IB-A5SS        TCGA-IB-A5ST 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
D10V2, continuous
                   vv
clus                STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  5Q GAIN MUTATED          0        0         1         2         0        0
  5Q GAIN WILD-TYPE        2        3         6        39         2        2
D10V3, multiclass
                   vv
clus                T1+T2 T3+T4
  5Q GAIN MUTATED       0     3
  5Q GAIN WILD-TYPE     6    48
D10V4, multiclass
       clus
vv      5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  T1+T2               0                 6
  T3+T4               3                48
D10V5, binary
                   cls
clus                 0  1
  5Q GAIN MUTATED    1  2
  5Q GAIN WILD-TYPE 13 41
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5Q GAIN MUTATED      1    2
  5Q GAIN WILD-TYPE   13   41
   clus
vv  5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  0               1                13
  1               2                41
                   vv
clus                M0 M1 MX
  5Q GAIN MUTATED    2  0  1
  5Q GAIN WILD-TYPE 30  2 22
D10V6, multiclass
    clus
vv   5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  M0               2                30
  M1               0                 2
  MX               1                22
D10V7, binary
                   cls
clus                 0  1
  5Q GAIN MUTATED    1  2
  5Q GAIN WILD-TYPE 30 24
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5Q GAIN MUTATED      1    2
  5Q GAIN WILD-TYPE   30   24
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  FEMALE               1                30
  MALE                 2                24
                   vv
clus                PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  5Q GAIN MUTATED                                     3
  5Q GAIN WILD-TYPE                                  48
                   vv
clus                PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  5Q GAIN MUTATED                                       0
  5Q GAIN WILD-TYPE                                     4
                   vv
clus                PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  5Q GAIN MUTATED                                                  0
  5Q GAIN WILD-TYPE                                                1
D10V8, multiclass
                                                  clus
vv                                                 5Q GAIN MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            3
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               0
                                                  clus
vv                                                 5Q GAIN WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                             48
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                            4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                 1
D10V9, continuous
[1] "Remove cluster labels:" "5Q GAIN MUTATED"       
clus
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
                1                13 
       TCGA-F2-6880        TCGA-FB-A4P5        TCGA-H6-8124        TCGA-H6-A45N 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-IB-7644        TCGA-IB-7649        TCGA-IB-7651        TCGA-IB-7885 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-IB-7887        TCGA-IB-7891        TCGA-IB-8126        TCGA-IB-8127 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-IB-A5SS 
"5Q GAIN WILD-TYPE" 
D10V10, continuous
[1] "Remove cluster labels:" "5Q GAIN MUTATED"       
clus
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
                1                10 
       TCGA-FB-A4P5        TCGA-H6-8124        TCGA-IB-7644        TCGA-IB-7649 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-IB-7651        TCGA-IB-7885        TCGA-IB-7891        TCGA-IB-8126 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-IB-8127        TCGA-IB-A5SS 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
                   vv
clus                R0 R1 RX
  5Q GAIN MUTATED    1  2  0
  5Q GAIN WILD-TYPE 31 19  2
D10V11, multiclass
    clus
vv   5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  R0               1                31
  R1               2                19
  RX               0                 2
D10V12, continuous

Clustering(11) Variable = 7P GAIN MUTATION ANALYSIS
D11V1, survival
                   sevent
clus2                0  1
  7P GAIN MUTATED    7  6
  7P GAIN WILD-TYPE 28 13
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
               13                41 
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
                6                13 
$`7P GAIN MUTATED`
TCGA-FB-A545 TCGA-HZ-7289 TCGA-HZ-7926 TCGA-HZ-8005 TCGA-HZ-8636 TCGA-IB-7645 
        0.03         7.86         0.26         3.91         0.16        49.38 
TCGA-IB-7646 TCGA-IB-7652 TCGA-IB-7886 TCGA-IB-7889 TCGA-IB-7893 TCGA-IB-8127 
        4.77        15.65         4.04        15.78         3.85        17.13 
TCGA-IB-A5SP 
        9.83 

$`7P GAIN WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.96        11.84         7.07         5.03         5.19 
TCGA-FB-A4P5 TCGA-H6-8124 TCGA-H6-A45N TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 
        0.13        12.89         7.63         0.92         0.66         0.13 
TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 
        0.26        12.13        12.03         0.62         0.99         0.69 
TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H 
        0.92         0.49         0.10         2.96         0.76         1.02 
TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 
        5.98         1.51        11.41        21.86        15.35        19.82 
TCGA-IB-7885 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7897 
       27.98         3.58        43.79        19.66        16.04        15.95 
TCGA-IB-8126 TCGA-IB-A5SO TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST 
        0.56        10.82         7.20        15.12         0.26 

  7P GAIN MUTATED 7P GAIN WILD-TYPE 
             0.03              0.10 
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
            49.38             43.79 
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
             4.77              5.98 
[1] "0.0 - 49.4 (4.8)" "0.1 - 43.8 (6.0)"
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A545 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-H6-8124        TCGA-H6-A45N        TCGA-HZ-7289        TCGA-HZ-7918 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-HZ-8519        TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-HZ-A49H        TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-IB-7645        TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-IB-7651        TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-IB-7887        TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-IB-7891        TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-IB-8127        TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-IB-A5SS        TCGA-IB-A5ST 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A545 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-H6-8124        TCGA-H6-A45N        TCGA-HZ-7289        TCGA-HZ-7918 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-HZ-8519        TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-HZ-A49H        TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-IB-7645        TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-IB-7651        TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-IB-7887        TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-IB-7891        TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-IB-8127        TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-IB-A5SS        TCGA-IB-A5ST 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A545 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-H6-8124        TCGA-H6-A45N        TCGA-HZ-7289        TCGA-HZ-7918 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-HZ-8519        TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-HZ-A49H        TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-IB-7645        TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-IB-7651        TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-IB-7887        TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-IB-7891        TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-IB-8127        TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-IB-A5SS        TCGA-IB-A5ST 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D11V2, continuous
                   vv
clus                STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  7P GAIN MUTATED          0        0         2        10         0        1
  7P GAIN WILD-TYPE        2        3         5        31         2        1
D11V3, multiclass
                   vv
clus                T1+T2 T3+T4
  7P GAIN MUTATED       0    13
  7P GAIN WILD-TYPE     6    38
D11V4, multiclass
       clus
vv      7P GAIN MUTATED 7P GAIN WILD-TYPE
  T1+T2               0                 6
  T3+T4              13                38
D11V5, binary
                   cls
clus                 0  1
  7P GAIN MUTATED    3 10
  7P GAIN WILD-TYPE 11 33
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7P GAIN MUTATED      3   10
  7P GAIN WILD-TYPE   11   33
   clus
vv  7P GAIN MUTATED 7P GAIN WILD-TYPE
  0               3                11
  1              10                33
                   vv
clus                M0 M1 MX
  7P GAIN MUTATED    9  1  3
  7P GAIN WILD-TYPE 23  1 20
D11V6, multiclass
    clus
vv   7P GAIN MUTATED 7P GAIN WILD-TYPE
  M0               9                23
  M1               1                 1
  MX               3                20
D11V7, binary
                   cls
clus                 0  1
  7P GAIN MUTATED    5  8
  7P GAIN WILD-TYPE 26 18
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7P GAIN MUTATED      5    8
  7P GAIN WILD-TYPE   26   18
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  FEMALE               5                26
  MALE                 8                18
                   vv
clus                PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  7P GAIN MUTATED                                    12
  7P GAIN WILD-TYPE                                  39
                   vv
clus                PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  7P GAIN MUTATED                                       1
  7P GAIN WILD-TYPE                                     3
                   vv
clus                PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  7P GAIN MUTATED                                                  0
  7P GAIN WILD-TYPE                                                1
D11V8, multiclass
                                                  clus
vv                                                 7P GAIN MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           12
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               0
                                                  clus
vv                                                 7P GAIN WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                             39
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                            3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                 1
D11V9, continuous
[1] "Remove cluster labels:" "7P GAIN MUTATED"       
clus
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
                2                12 
       TCGA-F2-6880        TCGA-FB-A4P5        TCGA-H6-8124        TCGA-H6-A45N 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-IB-7644        TCGA-IB-7649        TCGA-IB-7651        TCGA-IB-7885 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-IB-7887        TCGA-IB-7891        TCGA-IB-8126        TCGA-IB-A5SS 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
D11V10, continuous
[1] "Remove cluster labels:" "7P GAIN MUTATED"       
clus
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
                2                 9 
       TCGA-FB-A4P5        TCGA-H6-8124        TCGA-IB-7644        TCGA-IB-7649 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-IB-7651        TCGA-IB-7885        TCGA-IB-7891        TCGA-IB-8126 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-IB-A5SS 
"7P GAIN WILD-TYPE" 
                   vv
clus                R0 R1 RX
  7P GAIN MUTATED    3  7  2
  7P GAIN WILD-TYPE 29 14  0
D11V11, multiclass
    clus
vv   7P GAIN MUTATED 7P GAIN WILD-TYPE
  R0               3                29
  R1               7                14
  RX               2                 0
D11V12, continuous

Clustering(12) Variable = 7Q GAIN MUTATION ANALYSIS
D12V1, survival
                   sevent
clus2                0  1
  7Q GAIN MUTATED    6  6
  7Q GAIN WILD-TYPE 29 13
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
               12                42 
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
                6                13 
$`7Q GAIN MUTATED`
TCGA-FB-A545 TCGA-HZ-7289 TCGA-HZ-7926 TCGA-HZ-8005 TCGA-HZ-8636 TCGA-IB-7645 
        0.03         7.86         0.26         3.91         0.16        49.38 
TCGA-IB-7646 TCGA-IB-7652 TCGA-IB-7886 TCGA-IB-7889 TCGA-IB-7893 TCGA-IB-8127 
        4.77        15.65         4.04        15.78         3.85        17.13 

$`7Q GAIN WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.96        11.84         7.07         5.03         5.19 
TCGA-FB-A4P5 TCGA-H6-8124 TCGA-H6-A45N TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 
        0.13        12.89         7.63         0.92         0.66         0.13 
TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 
        0.26        12.13        12.03         0.62         0.99         0.69 
TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H 
        0.92         0.49         0.10         2.96         0.76         1.02 
TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 
        5.98         1.51        11.41        21.86        15.35        19.82 
TCGA-IB-7885 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7897 
       27.98         3.58        43.79        19.66        16.04        15.95 
TCGA-IB-8126 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST 
        0.56        10.82         9.83         7.20        15.12         0.26 

  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
             0.03              0.10 
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
            49.38             43.79 
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
            4.405             6.525 
[1] "0.0 - 49.4 (4.4)" "0.1 - 43.8 (6.5)"
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A545 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-H6-8124        TCGA-H6-A45N        TCGA-HZ-7289        TCGA-HZ-7918 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-HZ-8519        TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-HZ-A49H        TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-IB-7645        TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-IB-7651        TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-IB-7887        TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-IB-7891        TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-IB-8127        TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-IB-A5SS        TCGA-IB-A5ST 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A545 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-H6-8124        TCGA-H6-A45N        TCGA-HZ-7289        TCGA-HZ-7918 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-HZ-8519        TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-HZ-A49H        TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-IB-7645        TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-IB-7651        TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-IB-7887        TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-IB-7891        TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-IB-8127        TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-IB-A5SS        TCGA-IB-A5ST 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A545 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-H6-8124        TCGA-H6-A45N        TCGA-HZ-7289        TCGA-HZ-7918 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-HZ-8519        TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-HZ-A49H        TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-IB-7645        TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-IB-7651        TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-IB-7887        TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-IB-7891        TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-IB-8127        TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-IB-A5SS        TCGA-IB-A5ST 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D12V2, continuous
                   vv
clus                STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  7Q GAIN MUTATED          0        0         1        10         0        1
  7Q GAIN WILD-TYPE        2        3         6        31         2        1
D12V3, multiclass
                   vv
clus                T1+T2 T3+T4
  7Q GAIN MUTATED       0    12
  7Q GAIN WILD-TYPE     6    39
D12V4, multiclass
       clus
vv      7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  T1+T2               0                 6
  T3+T4              12                39
D12V5, binary
                   cls
clus                 0  1
  7Q GAIN MUTATED    2 10
  7Q GAIN WILD-TYPE 12 33
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7Q GAIN MUTATED      2   10
  7Q GAIN WILD-TYPE   12   33
   clus
vv  7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  0               2                12
  1              10                33
                   vv
clus                M0 M1 MX
  7Q GAIN MUTATED    8  1  3
  7Q GAIN WILD-TYPE 24  1 20
D12V6, multiclass
    clus
vv   7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  M0               8                24
  M1               1                 1
  MX               3                20
D12V7, binary
                   cls
clus                 0  1
  7Q GAIN MUTATED    5  7
  7Q GAIN WILD-TYPE 26 19
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7Q GAIN MUTATED      5    7
  7Q GAIN WILD-TYPE   26   19
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  FEMALE               5                26
  MALE                 7                19
                   vv
clus                PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  7Q GAIN MUTATED                                    11
  7Q GAIN WILD-TYPE                                  40
                   vv
clus                PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  7Q GAIN MUTATED                                       1
  7Q GAIN WILD-TYPE                                     3
                   vv
clus                PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  7Q GAIN MUTATED                                                  0
  7Q GAIN WILD-TYPE                                                1
D12V8, multiclass
                                                  clus
vv                                                 7Q GAIN MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           11
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               0
                                                  clus
vv                                                 7Q GAIN WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                             40
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                            3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                 1
D12V9, continuous
[1] "Remove cluster labels:" "7Q GAIN MUTATED"       
clus
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
                2                12 
       TCGA-F2-6880        TCGA-FB-A4P5        TCGA-H6-8124        TCGA-H6-A45N 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-IB-7644        TCGA-IB-7649        TCGA-IB-7651        TCGA-IB-7885 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-IB-7887        TCGA-IB-7891        TCGA-IB-8126        TCGA-IB-A5SS 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
D12V10, continuous
[1] "Remove cluster labels:" "7Q GAIN MUTATED"       
clus
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
                2                 9 
       TCGA-FB-A4P5        TCGA-H6-8124        TCGA-IB-7644        TCGA-IB-7649 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-IB-7651        TCGA-IB-7885        TCGA-IB-7891        TCGA-IB-8126 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-IB-A5SS 
"7Q GAIN WILD-TYPE" 
                   vv
clus                R0 R1 RX
  7Q GAIN MUTATED    3  6  2
  7Q GAIN WILD-TYPE 29 15  0
D12V11, multiclass
    clus
vv   7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  R0               3                29
  R1               6                15
  RX               2                 0
D12V12, continuous

Clustering(13) Variable = 8P GAIN MUTATION ANALYSIS
D13V1, survival
                   sevent
clus2                0  1
  8P GAIN MUTATED    4  3
  8P GAIN WILD-TYPE 31 16
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
                7                47 
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
                3                16 
$`8P GAIN MUTATED`
TCGA-FB-A545 TCGA-HZ-7922 TCGA-HZ-8315 TCGA-IB-7646 TCGA-IB-7886 TCGA-IB-7893 
        0.03         0.13         0.92         4.77         4.04         3.85 
TCGA-IB-A5SP 
        9.83 

$`8P GAIN WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.96        11.84         7.07         5.03         5.19 
TCGA-FB-A4P5 TCGA-H6-8124 TCGA-H6-A45N TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 
        0.13        12.89         7.63         7.86         0.92         0.66 
TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 
        0.26        12.13        12.03         0.26         0.62         0.99 
TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8636 TCGA-HZ-8638 
        0.69         3.91         0.49         0.10         0.16         2.96 
TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 
        0.76         1.02         5.98         1.51        11.41        49.38 
TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7887 
       21.86        15.35        19.82        15.65        27.98         3.58 
TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7897 TCGA-IB-8126 
       43.79        15.78        19.66        16.04        15.95         0.56 
TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST 
       17.13        10.82         7.20        15.12         0.26 

  8P GAIN MUTATED 8P GAIN WILD-TYPE 
             0.03              0.10 
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
             9.83             49.38 
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
             3.85              7.20 
[1] "0.0 - 9.8 (3.9)"  "0.1 - 49.4 (7.2)"
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A545 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-H6-8124        TCGA-H6-A45N        TCGA-HZ-7289        TCGA-HZ-7918 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-HZ-8519        TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-HZ-A49H        TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-IB-7645        TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-IB-7651        TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-IB-7887        TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-IB-7891        TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-IB-8127        TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-IB-A5SS        TCGA-IB-A5ST 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A545 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-H6-8124        TCGA-H6-A45N        TCGA-HZ-7289        TCGA-HZ-7918 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-HZ-8519        TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-HZ-A49H        TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-IB-7645        TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-IB-7651        TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-IB-7887        TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-IB-7891        TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-IB-8127        TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-IB-A5SS        TCGA-IB-A5ST 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A545 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-H6-8124        TCGA-H6-A45N        TCGA-HZ-7289        TCGA-HZ-7918 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-HZ-8519        TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-HZ-A49H        TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-IB-7645        TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-IB-7651        TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-IB-7887        TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-IB-7891        TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-IB-8127        TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-IB-A5SS        TCGA-IB-A5ST 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
[1] "hr=" "7.7"
D13V2, continuous
                   vv
clus                STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  8P GAIN MUTATED          0        0         3         5         0        0
  8P GAIN WILD-TYPE        2        3         4        36         2        2
D13V3, multiclass
                   vv
clus                T1+T2 T3+T4
  8P GAIN MUTATED       0     8
  8P GAIN WILD-TYPE     6    43
D13V4, multiclass
       clus
vv      8P GAIN MUTATED 8P GAIN WILD-TYPE
  T1+T2               0                 6
  T3+T4               8                43
D13V5, binary
                   cls
clus                 0  1
  8P GAIN MUTATED    3  5
  8P GAIN WILD-TYPE 11 38
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8P GAIN MUTATED      3    5
  8P GAIN WILD-TYPE   11   38
   clus
vv  8P GAIN MUTATED 8P GAIN WILD-TYPE
  0               3                11
  1               5                38
                   vv
clus                M0 M1 MX
  8P GAIN MUTATED    5  0  3
  8P GAIN WILD-TYPE 27  2 20
D13V6, multiclass
    clus
vv   8P GAIN MUTATED 8P GAIN WILD-TYPE
  M0               5                27
  M1               0                 2
  MX               3                20
D13V7, binary
                   cls
clus                 0  1
  8P GAIN MUTATED    4  4
  8P GAIN WILD-TYPE 27 22
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8P GAIN MUTATED      4    4
  8P GAIN WILD-TYPE   27   22
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  FEMALE               4                27
  MALE                 4                22
                   vv
clus                PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  8P GAIN MUTATED                                     8
  8P GAIN WILD-TYPE                                  43
                   vv
clus                PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  8P GAIN MUTATED                                       0
  8P GAIN WILD-TYPE                                     4
                   vv
clus                PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  8P GAIN MUTATED                                                  0
  8P GAIN WILD-TYPE                                                1
D13V8, multiclass
                                                  clus
vv                                                 8P GAIN MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            8
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               0
                                                  clus
vv                                                 8P GAIN WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                             43
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                            4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                 1
D13V9, continuous
[1] "Remove cluster labels:" "8P GAIN MUTATED"       
clus
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
                1                13 
       TCGA-F2-6880        TCGA-FB-A4P5        TCGA-H6-8124        TCGA-H6-A45N 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-IB-7644        TCGA-IB-7649        TCGA-IB-7651        TCGA-IB-7885 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-IB-7887        TCGA-IB-7891        TCGA-IB-8126        TCGA-IB-8127 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-IB-A5SS 
"8P GAIN WILD-TYPE" 
D13V10, continuous
[1] "Remove cluster labels:" "8P GAIN MUTATED"       
clus
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
                1                10 
       TCGA-FB-A4P5        TCGA-H6-8124        TCGA-IB-7644        TCGA-IB-7649 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-IB-7651        TCGA-IB-7885        TCGA-IB-7891        TCGA-IB-8126 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-IB-8127        TCGA-IB-A5SS 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
                   vv
clus                R0 R1 RX
  8P GAIN MUTATED    3  4  0
  8P GAIN WILD-TYPE 29 17  2
D13V11, multiclass
    clus
vv   8P GAIN MUTATED 8P GAIN WILD-TYPE
  R0               3                29
  R1               4                17
  RX               0                 2
D13V12, continuous

Clustering(14) Variable = 8Q GAIN MUTATION ANALYSIS
D14V1, survival
                   sevent
clus2                0  1
  8Q GAIN MUTATED    8  6
  8Q GAIN WILD-TYPE 27 13
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
               14                40 
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
                6                13 
$`8Q GAIN MUTATED`
TCGA-F2-6879 TCGA-FB-A545 TCGA-HZ-7289 TCGA-HZ-7922 TCGA-HZ-7925 TCGA-HZ-8315 
       10.98         0.03         7.86         0.13        12.03         0.92 
TCGA-HZ-8636 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7886 TCGA-IB-7890 TCGA-IB-7893 
        0.16         4.77        21.86         4.04        19.66         3.85 
TCGA-IB-8127 TCGA-IB-A5SP 
       17.13         9.83 

$`8Q GAIN WILD-TYPE`
TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A4P5 
        9.96        11.84         7.07         5.03         5.19         0.13 
TCGA-H6-8124 TCGA-H6-A45N TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7923 TCGA-HZ-7924 
       12.89         7.63         0.92         0.66         0.26        12.13 
TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8317 
        0.26         0.62         0.99         0.69         3.91         0.49 
TCGA-HZ-8519 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK 
        0.10         2.96         0.76         1.02         5.98         1.51 
TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 
       11.41        49.38        15.35        19.82        15.65        27.98 
TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7891 TCGA-IB-7897 TCGA-IB-8126 
        3.58        43.79        15.78        16.04        15.95         0.56 
TCGA-IB-A5SO TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST 
       10.82         7.20        15.12         0.26 

  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
             0.03              0.10 
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
            21.86             49.38 
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
            6.315             5.585 
[1] "0.0 - 21.9 (6.3)" "0.1 - 49.4 (5.6)"
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A545 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-H6-8124        TCGA-H6-A45N        TCGA-HZ-7289        TCGA-HZ-7918 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-HZ-8519        TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-HZ-A49H        TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-IB-7645        TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-IB-7651        TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-IB-7887        TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-IB-7891        TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-IB-8127        TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-IB-A5SS        TCGA-IB-A5ST 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A545 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-H6-8124        TCGA-H6-A45N        TCGA-HZ-7289        TCGA-HZ-7918 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-HZ-8519        TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-HZ-A49H        TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-IB-7645        TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-IB-7651        TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-IB-7887        TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-IB-7891        TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-IB-8127        TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-IB-A5SS        TCGA-IB-A5ST 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A545 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-H6-8124        TCGA-H6-A45N        TCGA-HZ-7289        TCGA-HZ-7918 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-HZ-8519        TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-HZ-A49H        TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-IB-7645        TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-IB-7651        TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-IB-7887        TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-IB-7891        TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-IB-8127        TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-IB-A5SS        TCGA-IB-A5ST 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
[1] "hr=" "1.4"
D14V2, continuous
                   vv
clus                STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  8Q GAIN MUTATED          0        1         3        10         0        1
  8Q GAIN WILD-TYPE        2        2         4        31         2        1
D14V3, multiclass
                   vv
clus                T1+T2 T3+T4
  8Q GAIN MUTATED       1    14
  8Q GAIN WILD-TYPE     5    37
D14V4, multiclass
       clus
vv      8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  T1+T2               1                 5
  T3+T4              14                37
D14V5, binary
                   cls
clus                 0  1
  8Q GAIN MUTATED    5 10
  8Q GAIN WILD-TYPE  9 33
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8Q GAIN MUTATED      5   10
  8Q GAIN WILD-TYPE    9   33
   clus
vv  8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  0               5                 9
  1              10                33
                   vv
clus                M0 M1 MX
  8Q GAIN MUTATED    9  1  5
  8Q GAIN WILD-TYPE 23  1 18
D14V6, multiclass
    clus
vv   8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  M0               9                23
  M1               1                 1
  MX               5                18
D14V7, binary
                   cls
clus                 0  1
  8Q GAIN MUTATED    6  9
  8Q GAIN WILD-TYPE 25 17
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8Q GAIN MUTATED      6    9
  8Q GAIN WILD-TYPE   25   17
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  FEMALE               6                25
  MALE                 9                17
                   vv
clus                PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  8Q GAIN MUTATED                                    13
  8Q GAIN WILD-TYPE                                  38
                   vv
clus                PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  8Q GAIN MUTATED                                       1
  8Q GAIN WILD-TYPE                                     3
                   vv
clus                PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  8Q GAIN MUTATED                                                  0
  8Q GAIN WILD-TYPE                                                1
D14V8, multiclass
                                                  clus
vv                                                 8Q GAIN MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           13
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               0
                                                  clus
vv                                                 8Q GAIN WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                             38
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                            3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                 1
D14V9, continuous
[1] "Remove cluster labels:" "8Q GAIN MUTATED"       
clus
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
                2                12 
       TCGA-F2-6880        TCGA-FB-A4P5        TCGA-H6-8124        TCGA-H6-A45N 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-IB-7644        TCGA-IB-7649        TCGA-IB-7651        TCGA-IB-7885 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-IB-7887        TCGA-IB-7891        TCGA-IB-8126        TCGA-IB-A5SS 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
D14V10, continuous
[1] "Remove cluster labels:" "8Q GAIN MUTATED"       
clus
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
                2                 9 
       TCGA-FB-A4P5        TCGA-H6-8124        TCGA-IB-7644        TCGA-IB-7649 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-IB-7651        TCGA-IB-7885        TCGA-IB-7891        TCGA-IB-8126 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-IB-A5SS 
"8Q GAIN WILD-TYPE" 
                   vv
clus                R0 R1 RX
  8Q GAIN MUTATED    6  7  1
  8Q GAIN WILD-TYPE 26 14  1
D14V11, multiclass
    clus
vv   8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  R0               6                26
  R1               7                14
  RX               1                 1
D14V12, continuous

Clustering(15) Variable = 9Q GAIN MUTATION ANALYSIS
D15V1, survival
                   sevent
clus2                0  1
  9Q GAIN MUTATED    1  2
  9Q GAIN WILD-TYPE 34 17
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
                3                51 
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
                2                17 
$`9Q GAIN MUTATED`
TCGA-IB-7646 TCGA-IB-7893 TCGA-IB-A5SP 
        4.77         3.85         9.83 

$`9Q GAIN WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.96        11.84         7.07         5.03         5.19 
TCGA-FB-A4P5 TCGA-FB-A545 TCGA-H6-8124 TCGA-H6-A45N TCGA-HZ-7289 TCGA-HZ-7918 
        0.13         0.03        12.89         7.63         7.86         0.92 
TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 
        0.66         0.13         0.26        12.13        12.03         0.26 
TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 
        0.62         0.99         0.69         3.91         0.92         0.49 
TCGA-HZ-8519 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH 
        0.10         0.16         2.96         0.76         1.02         5.98 
TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 
        1.51        11.41        49.38        21.86        15.35        19.82 
TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 
       15.65        27.98         4.04         3.58        43.79        15.78 
TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO 
       19.66        16.04        15.95         0.56        17.13        10.82 
TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST 
        7.20        15.12         0.26 

  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
             3.85              0.03 
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
             9.83             49.38 
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
             4.77              5.98 
[1] "3.9 - 9.8 (4.8)"  "0.0 - 49.4 (6.0)"
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A545 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-H6-8124        TCGA-H6-A45N        TCGA-HZ-7289        TCGA-HZ-7918 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-HZ-8519        TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-HZ-A49H        TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-IB-7645        TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-IB-7651        TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-IB-7887        TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-IB-7891        TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-IB-8127        TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-IB-A5SS        TCGA-IB-A5ST 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A545 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-H6-8124        TCGA-H6-A45N        TCGA-HZ-7289        TCGA-HZ-7918 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-HZ-8519        TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-HZ-A49H        TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-IB-7645        TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-IB-7651        TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-IB-7887        TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-IB-7891        TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-IB-8127        TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-IB-A5SS        TCGA-IB-A5ST 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A545 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-H6-8124        TCGA-H6-A45N        TCGA-HZ-7289        TCGA-HZ-7918 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-HZ-8519        TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-HZ-A49H        TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-IB-7645        TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-IB-7651        TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-IB-7887        TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-IB-7891        TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-IB-8127        TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-IB-A5SS        TCGA-IB-A5ST 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
[1] "hr=" "5.2"
D15V2, continuous
                   vv
clus                STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  9Q GAIN MUTATED          0        0         2         1         0        0
  9Q GAIN WILD-TYPE        2        3         5        40         2        2
D15V3, multiclass
                   vv
clus                T1+T2 T3+T4
  9Q GAIN MUTATED       0     3
  9Q GAIN WILD-TYPE     6    48
D15V4, multiclass
       clus
vv      9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  T1+T2               0                 6
  T3+T4               3                48
D15V5, binary
                   cls
clus                 0  1
  9Q GAIN MUTATED    2  1
  9Q GAIN WILD-TYPE 12 42
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9Q GAIN MUTATED      2    1
  9Q GAIN WILD-TYPE   12   42
   clus
vv  9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  0               2                12
  1               1                42
                   vv
clus                M0 M1 MX
  9Q GAIN MUTATED    3  0  0
  9Q GAIN WILD-TYPE 29  2 23
D15V6, multiclass
    clus
vv   9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  M0               3                29
  M1               0                 2
  MX               0                23
D15V7, binary
                   cls
clus                 0  1
  9Q GAIN MUTATED    0  3
  9Q GAIN WILD-TYPE 31 23
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9Q GAIN MUTATED      0    3
  9Q GAIN WILD-TYPE   31   23
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  FEMALE               0                31
  MALE                 3                23
                   vv
clus                PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  9Q GAIN MUTATED                                     3
  9Q GAIN WILD-TYPE                                  48
                   vv
clus                PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  9Q GAIN MUTATED                                       0
  9Q GAIN WILD-TYPE                                     4
                   vv
clus                PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  9Q GAIN MUTATED                                                  0
  9Q GAIN WILD-TYPE                                                1
D15V8, multiclass
                                                  clus
vv                                                 9Q GAIN MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            3
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               0
                                                  clus
vv                                                 9Q GAIN WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                             48
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                            4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                 1
D15V9, continuous
D15V10, continuous
                   vv
clus                R0 R1 RX
  9Q GAIN MUTATED    1  2  0
  9Q GAIN WILD-TYPE 31 19  2
D15V11, multiclass
    clus
vv   9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  R0               1                31
  R1               2                19
  RX               0                 2
D15V12, continuous

Clustering(16) Variable = 11P GAIN MUTATION ANALYSIS
D16V1, survival
                    sevent
clus2                 0  1
  11P GAIN MUTATED    4  2
  11P GAIN WILD-TYPE 31 17
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                 6                 48 
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                 2                 17 
$`11P GAIN MUTATED`
TCGA-FB-A545 TCGA-HZ-A4BH TCGA-IB-7647 TCGA-IB-7893 TCGA-IB-8127 TCGA-IB-A5SP 
        0.03         5.98        21.86         3.85        17.13         9.83 

$`11P GAIN WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.96        11.84         7.07         5.03         5.19 
TCGA-FB-A4P5 TCGA-H6-8124 TCGA-H6-A45N TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 
        0.13        12.89         7.63         7.86         0.92         0.66 
TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 
        0.13         0.26        12.13        12.03         0.26         0.62 
TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8519 
        0.99         0.69         3.91         0.92         0.49         0.10 
TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BK TCGA-IB-7644 
        0.16         2.96         0.76         1.02         1.51        11.41 
TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 
       49.38         4.77        15.35        19.82        15.65        27.98 
TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 
        4.04         3.58        43.79        15.78        19.66        16.04 
TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-A5SO TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST 
       15.95         0.56        10.82         7.20        15.12         0.26 

  11P GAIN MUTATED 11P GAIN WILD-TYPE 
              0.03               0.10 
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
             21.86              49.38 
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
             7.905              5.110 
[1] "0.0 - 21.9 (7.9)" "0.1 - 49.4 (5.1)"
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A545         TCGA-H6-8124 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-H6-A45N         TCGA-HZ-7289         TCGA-HZ-7918 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-HZ-7919         TCGA-HZ-7922         TCGA-HZ-7923 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-HZ-7924         TCGA-HZ-7925         TCGA-HZ-7926 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-HZ-8001         TCGA-HZ-8002         TCGA-HZ-8003 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-HZ-8005         TCGA-HZ-8315         TCGA-HZ-8317 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-HZ-8519         TCGA-HZ-8636         TCGA-HZ-8638 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-HZ-A49G         TCGA-HZ-A49H         TCGA-HZ-A4BH 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-HZ-A4BK         TCGA-IB-7644         TCGA-IB-7645 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-IB-7646         TCGA-IB-7647         TCGA-IB-7649 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-IB-7651         TCGA-IB-7652         TCGA-IB-7885 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-IB-7886         TCGA-IB-7887         TCGA-IB-7888 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-IB-7889         TCGA-IB-7890         TCGA-IB-7891 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-IB-7893         TCGA-IB-7897         TCGA-IB-8126 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-IB-8127         TCGA-IB-A5SO         TCGA-IB-A5SP 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-IB-A5SQ         TCGA-IB-A5SS         TCGA-IB-A5ST 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A545         TCGA-H6-8124 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-H6-A45N         TCGA-HZ-7289         TCGA-HZ-7918 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-HZ-7919         TCGA-HZ-7922         TCGA-HZ-7923 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-HZ-7924         TCGA-HZ-7925         TCGA-HZ-7926 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-HZ-8001         TCGA-HZ-8002         TCGA-HZ-8003 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-HZ-8005         TCGA-HZ-8315         TCGA-HZ-8317 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-HZ-8519         TCGA-HZ-8636         TCGA-HZ-8638 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-HZ-A49G         TCGA-HZ-A49H         TCGA-HZ-A4BH 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-HZ-A4BK         TCGA-IB-7644         TCGA-IB-7645 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-IB-7646         TCGA-IB-7647         TCGA-IB-7649 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-IB-7651         TCGA-IB-7652         TCGA-IB-7885 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-IB-7886         TCGA-IB-7887         TCGA-IB-7888 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-IB-7889         TCGA-IB-7890         TCGA-IB-7891 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-IB-7893         TCGA-IB-7897         TCGA-IB-8126 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-IB-8127         TCGA-IB-A5SO         TCGA-IB-A5SP 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-IB-A5SQ         TCGA-IB-A5SS         TCGA-IB-A5ST 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A545         TCGA-H6-8124 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-H6-A45N         TCGA-HZ-7289         TCGA-HZ-7918 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-HZ-7919         TCGA-HZ-7922         TCGA-HZ-7923 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-HZ-7924         TCGA-HZ-7925         TCGA-HZ-7926 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-HZ-8001         TCGA-HZ-8002         TCGA-HZ-8003 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-HZ-8005         TCGA-HZ-8315         TCGA-HZ-8317 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-HZ-8519         TCGA-HZ-8636         TCGA-HZ-8638 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-HZ-A49G         TCGA-HZ-A49H         TCGA-HZ-A4BH 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-HZ-A4BK         TCGA-IB-7644         TCGA-IB-7645 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-IB-7646         TCGA-IB-7647         TCGA-IB-7649 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-IB-7651         TCGA-IB-7652         TCGA-IB-7885 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-IB-7886         TCGA-IB-7887         TCGA-IB-7888 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-IB-7889         TCGA-IB-7890         TCGA-IB-7891 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-IB-7893         TCGA-IB-7897         TCGA-IB-8126 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-IB-8127         TCGA-IB-A5SO         TCGA-IB-A5SP 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-IB-A5SQ         TCGA-IB-A5SS         TCGA-IB-A5ST 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
[1] "hr=" "1.4"
D16V2, continuous
                    vv
clus                 STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  11P GAIN MUTATED          0        0         2         4         0        0
  11P GAIN WILD-TYPE        2        3         5        37         2        2
D16V3, multiclass
                    vv
clus                 T1+T2 T3+T4
  11P GAIN MUTATED       0     6
  11P GAIN WILD-TYPE     6    45
D16V4, multiclass
       clus
vv      11P GAIN MUTATED 11P GAIN WILD-TYPE
  T1+T2                0                  6
  T3+T4                6                 45
D16V5, binary
                    cls
clus                  0  1
  11P GAIN MUTATED    2  4
  11P GAIN WILD-TYPE 12 39
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11P GAIN MUTATED      2    4
  11P GAIN WILD-TYPE   12   39
   clus
vv  11P GAIN MUTATED 11P GAIN WILD-TYPE
  0                2                 12
  1                4                 39
                    vv
clus                 M0 M1 MX
  11P GAIN MUTATED    5  0  1
  11P GAIN WILD-TYPE 27  2 22
D16V6, multiclass
    clus
vv   11P GAIN MUTATED 11P GAIN WILD-TYPE
  M0                5                 27
  M1                0                  2
  MX                1                 22
D16V7, binary
                    cls
clus                  0  1
  11P GAIN MUTATED    2  4
  11P GAIN WILD-TYPE 29 22
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11P GAIN MUTATED      2    4
  11P GAIN WILD-TYPE   29   22
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  FEMALE                2                 29
  MALE                  4                 22
                    vv
clus                 PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  11P GAIN MUTATED                                     6
  11P GAIN WILD-TYPE                                  45
                    vv
clus                 PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  11P GAIN MUTATED                                       0
  11P GAIN WILD-TYPE                                     4
                    vv
clus                 PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  11P GAIN MUTATED                                                  0
  11P GAIN WILD-TYPE                                                1
D16V8, multiclass
                                                  clus
vv                                                 11P GAIN MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                             6
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                0
                                                  clus
vv                                                 11P GAIN WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                              45
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                             4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                  1
D16V9, continuous
[1] "Remove cluster labels:" "11P GAIN MUTATED"      
clus
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                 1                 13 
        TCGA-F2-6880         TCGA-FB-A4P5         TCGA-H6-8124 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-H6-A45N         TCGA-IB-7644         TCGA-IB-7649 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-IB-7651         TCGA-IB-7885         TCGA-IB-7886 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-IB-7887         TCGA-IB-7891         TCGA-IB-8126 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-IB-A5SS 
"11P GAIN WILD-TYPE" 
D16V10, continuous
[1] "Remove cluster labels:" "11P GAIN MUTATED"      
clus
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                 1                 10 
        TCGA-FB-A4P5         TCGA-H6-8124         TCGA-IB-7644 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-IB-7649         TCGA-IB-7651         TCGA-IB-7885 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-IB-7886         TCGA-IB-7891         TCGA-IB-8126 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-IB-A5SS 
"11P GAIN WILD-TYPE" 
                    vv
clus                 R0 R1 RX
  11P GAIN MUTATED    1  4  0
  11P GAIN WILD-TYPE 31 17  2
D16V11, multiclass
    clus
vv   11P GAIN MUTATED 11P GAIN WILD-TYPE
  R0                1                 31
  R1                4                 17
  RX                0                  2
D16V12, continuous

Clustering(17) Variable = 11Q GAIN MUTATION ANALYSIS
D17V1, survival
                    sevent
clus2                 0  1
  11Q GAIN MUTATED    3  2
  11Q GAIN WILD-TYPE 32 17
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                 5                 49 
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                 2                 17 
$`11Q GAIN MUTATED`
TCGA-FB-A545 TCGA-IB-7886 TCGA-IB-7893 TCGA-IB-8127 TCGA-IB-A5SP 
        0.03         4.04         3.85        17.13         9.83 

$`11Q GAIN WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.96        11.84         7.07         5.03         5.19 
TCGA-FB-A4P5 TCGA-H6-8124 TCGA-H6-A45N TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 
        0.13        12.89         7.63         7.86         0.92         0.66 
TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 
        0.13         0.26        12.13        12.03         0.26         0.62 
TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8519 
        0.99         0.69         3.91         0.92         0.49         0.10 
TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK 
        0.16         2.96         0.76         1.02         5.98         1.51 
TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 
       11.41        49.38         4.77        21.86        15.35        19.82 
TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 
       15.65        27.98         3.58        43.79        15.78        19.66 
TCGA-IB-7891 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-A5SO TCGA-IB-A5SQ TCGA-IB-A5SS 
       16.04        15.95         0.56        10.82         7.20        15.12 
TCGA-IB-A5ST 
        0.26 

  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
              0.03               0.10 
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
             17.13              49.38 
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
              4.04               5.98 
[1] "0.0 - 17.1 (4.0)" "0.1 - 49.4 (6.0)"
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A545         TCGA-H6-8124 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-H6-A45N         TCGA-HZ-7289         TCGA-HZ-7918 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-HZ-7919         TCGA-HZ-7922         TCGA-HZ-7923 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-HZ-7924         TCGA-HZ-7925         TCGA-HZ-7926 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-HZ-8001         TCGA-HZ-8002         TCGA-HZ-8003 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-HZ-8005         TCGA-HZ-8315         TCGA-HZ-8317 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-HZ-8519         TCGA-HZ-8636         TCGA-HZ-8638 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-HZ-A49G         TCGA-HZ-A49H         TCGA-HZ-A4BH 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-HZ-A4BK         TCGA-IB-7644         TCGA-IB-7645 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-IB-7646         TCGA-IB-7647         TCGA-IB-7649 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-IB-7651         TCGA-IB-7652         TCGA-IB-7885 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-IB-7886         TCGA-IB-7887         TCGA-IB-7888 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-IB-7889         TCGA-IB-7890         TCGA-IB-7891 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-IB-7893         TCGA-IB-7897         TCGA-IB-8126 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-IB-8127         TCGA-IB-A5SO         TCGA-IB-A5SP 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-IB-A5SQ         TCGA-IB-A5SS         TCGA-IB-A5ST 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A545         TCGA-H6-8124 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-H6-A45N         TCGA-HZ-7289         TCGA-HZ-7918 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-HZ-7919         TCGA-HZ-7922         TCGA-HZ-7923 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-HZ-7924         TCGA-HZ-7925         TCGA-HZ-7926 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-HZ-8001         TCGA-HZ-8002         TCGA-HZ-8003 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-HZ-8005         TCGA-HZ-8315         TCGA-HZ-8317 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-HZ-8519         TCGA-HZ-8636         TCGA-HZ-8638 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-HZ-A49G         TCGA-HZ-A49H         TCGA-HZ-A4BH 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-HZ-A4BK         TCGA-IB-7644         TCGA-IB-7645 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-IB-7646         TCGA-IB-7647         TCGA-IB-7649 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-IB-7651         TCGA-IB-7652         TCGA-IB-7885 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-IB-7886         TCGA-IB-7887         TCGA-IB-7888 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-IB-7889         TCGA-IB-7890         TCGA-IB-7891 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-IB-7893         TCGA-IB-7897         TCGA-IB-8126 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-IB-8127         TCGA-IB-A5SO         TCGA-IB-A5SP 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-IB-A5SQ         TCGA-IB-A5SS         TCGA-IB-A5ST 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A545         TCGA-H6-8124 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-H6-A45N         TCGA-HZ-7289         TCGA-HZ-7918 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-HZ-7919         TCGA-HZ-7922         TCGA-HZ-7923 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-HZ-7924         TCGA-HZ-7925         TCGA-HZ-7926 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-HZ-8001         TCGA-HZ-8002         TCGA-HZ-8003 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-HZ-8005         TCGA-HZ-8315         TCGA-HZ-8317 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-HZ-8519         TCGA-HZ-8636         TCGA-HZ-8638 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-HZ-A49G         TCGA-HZ-A49H         TCGA-HZ-A4BH 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-HZ-A4BK         TCGA-IB-7644         TCGA-IB-7645 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-IB-7646         TCGA-IB-7647         TCGA-IB-7649 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-IB-7651         TCGA-IB-7652         TCGA-IB-7885 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-IB-7886         TCGA-IB-7887         TCGA-IB-7888 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-IB-7889         TCGA-IB-7890         TCGA-IB-7891 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-IB-7893         TCGA-IB-7897         TCGA-IB-8126 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-IB-8127         TCGA-IB-A5SO         TCGA-IB-A5SP 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-IB-A5SQ         TCGA-IB-A5SS         TCGA-IB-A5ST 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
[1] "hr=" "1.8"
D17V2, continuous
                    vv
clus                 STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  11Q GAIN MUTATED          0        0         2         4         0        0
  11Q GAIN WILD-TYPE        2        3         5        37         2        2
D17V3, multiclass
                    vv
clus                 T1+T2 T3+T4
  11Q GAIN MUTATED       0     6
  11Q GAIN WILD-TYPE     6    45
D17V4, multiclass
       clus
vv      11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  T1+T2                0                  6
  T3+T4                6                 45
D17V5, binary
                    cls
clus                  0  1
  11Q GAIN MUTATED    2  4
  11Q GAIN WILD-TYPE 12 39
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11Q GAIN MUTATED      2    4
  11Q GAIN WILD-TYPE   12   39
   clus
vv  11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  0                2                 12
  1                4                 39
                    vv
clus                 M0 M1 MX
  11Q GAIN MUTATED    5  0  1
  11Q GAIN WILD-TYPE 27  2 22
D17V6, multiclass
    clus
vv   11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  M0                5                 27
  M1                0                  2
  MX                1                 22
D17V7, binary
                    cls
clus                  0  1
  11Q GAIN MUTATED    2  4
  11Q GAIN WILD-TYPE 29 22
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11Q GAIN MUTATED      2    4
  11Q GAIN WILD-TYPE   29   22
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  FEMALE                2                 29
  MALE                  4                 22
                    vv
clus                 PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  11Q GAIN MUTATED                                     6
  11Q GAIN WILD-TYPE                                  45
                    vv
clus                 PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  11Q GAIN MUTATED                                       0
  11Q GAIN WILD-TYPE                                     4
                    vv
clus                 PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  11Q GAIN MUTATED                                                  0
  11Q GAIN WILD-TYPE                                                1
D17V8, multiclass
                                                  clus
vv                                                 11Q GAIN MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                             6
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                0
                                                  clus
vv                                                 11Q GAIN WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                              45
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                             4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                  1
D17V9, continuous
[1] "Remove cluster labels:" "11Q GAIN MUTATED"      
clus
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                 2                 12 
        TCGA-F2-6880         TCGA-FB-A4P5         TCGA-H6-8124 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-H6-A45N         TCGA-IB-7644         TCGA-IB-7649 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-IB-7651         TCGA-IB-7885         TCGA-IB-7887 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-IB-7891         TCGA-IB-8126         TCGA-IB-A5SS 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
D17V10, continuous
[1] "Remove cluster labels:" "11Q GAIN MUTATED"      
clus
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                 2                  9 
        TCGA-FB-A4P5         TCGA-H6-8124         TCGA-IB-7644 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-IB-7649         TCGA-IB-7651         TCGA-IB-7885 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-IB-7891         TCGA-IB-8126         TCGA-IB-A5SS 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
                    vv
clus                 R0 R1 RX
  11Q GAIN MUTATED    2  3  0
  11Q GAIN WILD-TYPE 30 18  2
D17V11, multiclass
    clus
vv   11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  R0                2                 30
  R1                3                 18
  RX                0                  2
D17V12, continuous

Clustering(18) Variable = 12P GAIN MUTATION ANALYSIS
D18V1, survival
                    sevent
clus2                 0  1
  12P GAIN MUTATED    3  3
  12P GAIN WILD-TYPE 32 16
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
                 6                 48 
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
                 3                 16 
$`12P GAIN MUTATED`
TCGA-HZ-7289 TCGA-HZ-7922 TCGA-HZ-8005 TCGA-HZ-A4BK TCGA-IB-7646 TCGA-IB-7890 
        7.86         0.13         3.91         1.51         4.77        19.66 

$`12P GAIN WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.96        11.84         7.07         5.03         5.19 
TCGA-FB-A4P5 TCGA-FB-A545 TCGA-H6-8124 TCGA-H6-A45N TCGA-HZ-7918 TCGA-HZ-7919 
        0.13         0.03        12.89         7.63         0.92         0.66 
TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 
        0.26        12.13        12.03         0.26         0.62         0.99 
TCGA-HZ-8003 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8636 TCGA-HZ-8638 
        0.69         0.92         0.49         0.10         0.16         2.96 
TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7647 
        0.76         1.02         5.98        11.41        49.38        21.86 
TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 
       15.35        19.82        15.65        27.98         4.04         3.58 
TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 
       43.79        15.78        16.04         3.85        15.95         0.56 
TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST 
       17.13        10.82         9.83         7.20        15.12         0.26 

  12P GAIN MUTATED 12P GAIN WILD-TYPE 
              0.13               0.03 
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
             19.66              49.38 
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
             4.340              6.525 
[1] "0.1 - 19.7 (4.3)" "0.0 - 49.4 (6.5)"
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A545         TCGA-H6-8124 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-H6-A45N         TCGA-HZ-7289         TCGA-HZ-7918 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-HZ-7919         TCGA-HZ-7922         TCGA-HZ-7923 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-HZ-7924         TCGA-HZ-7925         TCGA-HZ-7926 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-HZ-8001         TCGA-HZ-8002         TCGA-HZ-8003 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-HZ-8005         TCGA-HZ-8315         TCGA-HZ-8317 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-HZ-8519         TCGA-HZ-8636         TCGA-HZ-8638 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-HZ-A49G         TCGA-HZ-A49H         TCGA-HZ-A4BH 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-HZ-A4BK         TCGA-IB-7644         TCGA-IB-7645 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-IB-7646         TCGA-IB-7647         TCGA-IB-7649 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-IB-7651         TCGA-IB-7652         TCGA-IB-7885 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-IB-7886         TCGA-IB-7887         TCGA-IB-7888 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-IB-7889         TCGA-IB-7890         TCGA-IB-7891 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-IB-7893         TCGA-IB-7897         TCGA-IB-8126 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-IB-8127         TCGA-IB-A5SO         TCGA-IB-A5SP 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-IB-A5SQ         TCGA-IB-A5SS         TCGA-IB-A5ST 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A545         TCGA-H6-8124 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-H6-A45N         TCGA-HZ-7289         TCGA-HZ-7918 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-HZ-7919         TCGA-HZ-7922         TCGA-HZ-7923 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-HZ-7924         TCGA-HZ-7925         TCGA-HZ-7926 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-HZ-8001         TCGA-HZ-8002         TCGA-HZ-8003 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-HZ-8005         TCGA-HZ-8315         TCGA-HZ-8317 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-HZ-8519         TCGA-HZ-8636         TCGA-HZ-8638 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-HZ-A49G         TCGA-HZ-A49H         TCGA-HZ-A4BH 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-HZ-A4BK         TCGA-IB-7644         TCGA-IB-7645 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-IB-7646         TCGA-IB-7647         TCGA-IB-7649 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-IB-7651         TCGA-IB-7652         TCGA-IB-7885 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-IB-7886         TCGA-IB-7887         TCGA-IB-7888 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-IB-7889         TCGA-IB-7890         TCGA-IB-7891 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-IB-7893         TCGA-IB-7897         TCGA-IB-8126 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-IB-8127         TCGA-IB-A5SO         TCGA-IB-A5SP 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-IB-A5SQ         TCGA-IB-A5SS         TCGA-IB-A5ST 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A545         TCGA-H6-8124 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-H6-A45N         TCGA-HZ-7289         TCGA-HZ-7918 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-HZ-7919         TCGA-HZ-7922         TCGA-HZ-7923 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-HZ-7924         TCGA-HZ-7925         TCGA-HZ-7926 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-HZ-8001         TCGA-HZ-8002         TCGA-HZ-8003 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-HZ-8005         TCGA-HZ-8315         TCGA-HZ-8317 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-HZ-8519         TCGA-HZ-8636         TCGA-HZ-8638 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-HZ-A49G         TCGA-HZ-A49H         TCGA-HZ-A4BH 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-HZ-A4BK         TCGA-IB-7644         TCGA-IB-7645 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-IB-7646         TCGA-IB-7647         TCGA-IB-7649 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-IB-7651         TCGA-IB-7652         TCGA-IB-7885 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-IB-7886         TCGA-IB-7887         TCGA-IB-7888 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-IB-7889         TCGA-IB-7890         TCGA-IB-7891 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-IB-7893         TCGA-IB-7897         TCGA-IB-8126 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-IB-8127         TCGA-IB-A5SO         TCGA-IB-A5SP 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-IB-A5SQ         TCGA-IB-A5SS         TCGA-IB-A5ST 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
[1] "hr=" "2.4"
D18V2, continuous
                    vv
clus                 STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  12P GAIN MUTATED          0        1         0         5         0        0
  12P GAIN WILD-TYPE        2        2         7        36         2        2
D18V3, multiclass
                    vv
clus                 T1+T2 T3+T4
  12P GAIN MUTATED       1     5
  12P GAIN WILD-TYPE     5    46
D18V4, multiclass
       clus
vv      12P GAIN MUTATED 12P GAIN WILD-TYPE
  T1+T2                1                  5
  T3+T4                5                 46
D18V5, binary
                    cls
clus                  0  1
  12P GAIN MUTATED    1  5
  12P GAIN WILD-TYPE 13 38
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12P GAIN MUTATED      1    5
  12P GAIN WILD-TYPE   13   38
   clus
vv  12P GAIN MUTATED 12P GAIN WILD-TYPE
  0                1                 13
  1                5                 38
                    vv
clus                 M0 M1 MX
  12P GAIN MUTATED    2  0  4
  12P GAIN WILD-TYPE 30  2 19
D18V6, multiclass
    clus
vv   12P GAIN MUTATED 12P GAIN WILD-TYPE
  M0                2                 30
  M1                0                  2
  MX                4                 19
D18V7, binary
                    cls
clus                  0  1
  12P GAIN MUTATED    1  5
  12P GAIN WILD-TYPE 30 21
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12P GAIN MUTATED      1    5
  12P GAIN WILD-TYPE   30   21
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  FEMALE                1                 30
  MALE                  5                 21
                    vv
clus                 PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  12P GAIN MUTATED                                     4
  12P GAIN WILD-TYPE                                  47
                    vv
clus                 PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  12P GAIN MUTATED                                       2
  12P GAIN WILD-TYPE                                     2
                    vv
clus                 PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  12P GAIN MUTATED                                                  0
  12P GAIN WILD-TYPE                                                1
D18V8, multiclass
                                                  clus
vv                                                 12P GAIN MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                             4
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           2
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                0
                                                  clus
vv                                                 12P GAIN WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                              47
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                             2
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                  1
D18V9, continuous
D18V10, continuous
                    vv
clus                 R0 R1 RX
  12P GAIN MUTATED    2  3  1
  12P GAIN WILD-TYPE 30 18  1
D18V11, multiclass
    clus
vv   12P GAIN MUTATED 12P GAIN WILD-TYPE
  R0                2                 30
  R1                3                 18
  RX                1                  1
D18V12, continuous

Clustering(19) Variable = 12Q GAIN MUTATION ANALYSIS
D19V1, survival
                    sevent
clus2                 0  1
  12Q GAIN MUTATED    3  2
  12Q GAIN WILD-TYPE 32 17
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
                 5                 49 
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
                 2                 17 
$`12Q GAIN MUTATED`
TCGA-HZ-7289 TCGA-HZ-7922 TCGA-HZ-8005 TCGA-HZ-A4BK TCGA-IB-7646 
        7.86         0.13         3.91         1.51         4.77 

$`12Q GAIN WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.96        11.84         7.07         5.03         5.19 
TCGA-FB-A4P5 TCGA-FB-A545 TCGA-H6-8124 TCGA-H6-A45N TCGA-HZ-7918 TCGA-HZ-7919 
        0.13         0.03        12.89         7.63         0.92         0.66 
TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 
        0.26        12.13        12.03         0.26         0.62         0.99 
TCGA-HZ-8003 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8636 TCGA-HZ-8638 
        0.69         0.92         0.49         0.10         0.16         2.96 
TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7647 
        0.76         1.02         5.98        11.41        49.38        21.86 
TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 
       15.35        19.82        15.65        27.98         4.04         3.58 
TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 
       43.79        15.78        19.66        16.04         3.85        15.95 
TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS 
        0.56        17.13        10.82         9.83         7.20        15.12 
TCGA-IB-A5ST 
        0.26 

  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
              0.13               0.03 
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
              7.86              49.38 
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
              3.91               7.07 
[1] "0.1 - 7.9 (3.9)"  "0.0 - 49.4 (7.1)"
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A545         TCGA-H6-8124 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-H6-A45N         TCGA-HZ-7289         TCGA-HZ-7918 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-HZ-7919         TCGA-HZ-7922         TCGA-HZ-7923 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-HZ-7924         TCGA-HZ-7925         TCGA-HZ-7926 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-HZ-8001         TCGA-HZ-8002         TCGA-HZ-8003 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-HZ-8005         TCGA-HZ-8315         TCGA-HZ-8317 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-HZ-8519         TCGA-HZ-8636         TCGA-HZ-8638 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-HZ-A49G         TCGA-HZ-A49H         TCGA-HZ-A4BH 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-HZ-A4BK         TCGA-IB-7644         TCGA-IB-7645 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-IB-7646         TCGA-IB-7647         TCGA-IB-7649 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-IB-7651         TCGA-IB-7652         TCGA-IB-7885 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-IB-7886         TCGA-IB-7887         TCGA-IB-7888 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-IB-7889         TCGA-IB-7890         TCGA-IB-7891 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-IB-7893         TCGA-IB-7897         TCGA-IB-8126 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-IB-8127         TCGA-IB-A5SO         TCGA-IB-A5SP 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-IB-A5SQ         TCGA-IB-A5SS         TCGA-IB-A5ST 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A545         TCGA-H6-8124 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-H6-A45N         TCGA-HZ-7289         TCGA-HZ-7918 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-HZ-7919         TCGA-HZ-7922         TCGA-HZ-7923 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-HZ-7924         TCGA-HZ-7925         TCGA-HZ-7926 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-HZ-8001         TCGA-HZ-8002         TCGA-HZ-8003 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-HZ-8005         TCGA-HZ-8315         TCGA-HZ-8317 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-HZ-8519         TCGA-HZ-8636         TCGA-HZ-8638 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-HZ-A49G         TCGA-HZ-A49H         TCGA-HZ-A4BH 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-HZ-A4BK         TCGA-IB-7644         TCGA-IB-7645 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-IB-7646         TCGA-IB-7647         TCGA-IB-7649 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-IB-7651         TCGA-IB-7652         TCGA-IB-7885 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-IB-7886         TCGA-IB-7887         TCGA-IB-7888 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-IB-7889         TCGA-IB-7890         TCGA-IB-7891 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-IB-7893         TCGA-IB-7897         TCGA-IB-8126 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-IB-8127         TCGA-IB-A5SO         TCGA-IB-A5SP 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-IB-A5SQ         TCGA-IB-A5SS         TCGA-IB-A5ST 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A545         TCGA-H6-8124 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-H6-A45N         TCGA-HZ-7289         TCGA-HZ-7918 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-HZ-7919         TCGA-HZ-7922         TCGA-HZ-7923 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-HZ-7924         TCGA-HZ-7925         TCGA-HZ-7926 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-HZ-8001         TCGA-HZ-8002         TCGA-HZ-8003 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-HZ-8005         TCGA-HZ-8315         TCGA-HZ-8317 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-HZ-8519         TCGA-HZ-8636         TCGA-HZ-8638 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-HZ-A49G         TCGA-HZ-A49H         TCGA-HZ-A4BH 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-HZ-A4BK         TCGA-IB-7644         TCGA-IB-7645 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-IB-7646         TCGA-IB-7647         TCGA-IB-7649 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-IB-7651         TCGA-IB-7652         TCGA-IB-7885 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-IB-7886         TCGA-IB-7887         TCGA-IB-7888 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-IB-7889         TCGA-IB-7890         TCGA-IB-7891 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-IB-7893         TCGA-IB-7897         TCGA-IB-8126 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-IB-8127         TCGA-IB-A5SO         TCGA-IB-A5SP 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-IB-A5SQ         TCGA-IB-A5SS         TCGA-IB-A5ST 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
[1] "hr=" "4.9"
D19V2, continuous
                    vv
clus                 STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  12Q GAIN MUTATED          0        0         0         5         0        0
  12Q GAIN WILD-TYPE        2        3         7        36         2        2
D19V3, multiclass
                    vv
clus                 T1+T2 T3+T4
  12Q GAIN MUTATED       0     5
  12Q GAIN WILD-TYPE     6    46
D19V4, multiclass
       clus
vv      12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  T1+T2                0                  6
  T3+T4                5                 46
D19V5, binary
                    cls
clus                  0  1
  12Q GAIN MUTATED    0  5
  12Q GAIN WILD-TYPE 14 38
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12Q GAIN MUTATED      0    5
  12Q GAIN WILD-TYPE   14   38
   clus
vv  12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  0                0                 14
  1                5                 38
                    vv
clus                 M0 M1 MX
  12Q GAIN MUTATED    1  0  4
  12Q GAIN WILD-TYPE 31  2 19
D19V6, multiclass
    clus
vv   12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  M0                1                 31
  M1                0                  2
  MX                4                 19
D19V7, binary
                    cls
clus                  0  1
  12Q GAIN MUTATED    1  4
  12Q GAIN WILD-TYPE 30 22
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12Q GAIN MUTATED      1    4
  12Q GAIN WILD-TYPE   30   22
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  FEMALE                1                 30
  MALE                  4                 22
                    vv
clus                 PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  12Q GAIN MUTATED                                     3
  12Q GAIN WILD-TYPE                                  48
                    vv
clus                 PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  12Q GAIN MUTATED                                       2
  12Q GAIN WILD-TYPE                                     2
                    vv
clus                 PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  12Q GAIN MUTATED                                                  0
  12Q GAIN WILD-TYPE                                                1
D19V8, multiclass
                                                  clus
vv                                                 12Q GAIN MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                             3
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           2
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                0
                                                  clus
vv                                                 12Q GAIN WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                              48
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                             2
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                  1
D19V9, continuous
D19V10, continuous
                    vv
clus                 R0 R1 RX
  12Q GAIN MUTATED    1  3  1
  12Q GAIN WILD-TYPE 31 18  1
D19V11, multiclass
    clus
vv   12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  R0                1                 31
  R1                3                 18
  RX                1                  1
D19V12, continuous

Clustering(20) Variable = 13Q GAIN MUTATION ANALYSIS
D20V1, survival
                    sevent
clus2                 0  1
  13Q GAIN MUTATED    2  2
  13Q GAIN WILD-TYPE 33 17
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                 4                 50 
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                 2                 17 
$`13Q GAIN MUTATED`
TCGA-H6-A45N TCGA-HZ-7922 TCGA-IB-7645 TCGA-IB-A5SO 
        7.63         0.13        49.38        10.82 

$`13Q GAIN WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.96        11.84         7.07         5.03         5.19 
TCGA-FB-A4P5 TCGA-FB-A545 TCGA-H6-8124 TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 
        0.13         0.03        12.89         7.86         0.92         0.66 
TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 
        0.26        12.13        12.03         0.26         0.62         0.99 
TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8636 
        0.69         3.91         0.92         0.49         0.10         0.16 
TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 
        2.96         0.76         1.02         5.98         1.51        11.41 
TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 
        4.77        21.86        15.35        19.82        15.65        27.98 
TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 
        4.04         3.58        43.79        15.78        19.66        16.04 
TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SP TCGA-IB-A5SQ 
        3.85        15.95         0.56        17.13         9.83         7.20 
TCGA-IB-A5SS TCGA-IB-A5ST 
       15.12         0.26 

  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
              0.13               0.03 
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
             49.38              43.79 
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
             9.225              5.110 
[1] "0.1 - 49.4 (9.2)" "0.0 - 43.8 (5.1)"
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A545         TCGA-H6-8124 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-H6-A45N         TCGA-HZ-7289         TCGA-HZ-7918 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-HZ-7919         TCGA-HZ-7922         TCGA-HZ-7923 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-HZ-7924         TCGA-HZ-7925         TCGA-HZ-7926 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-HZ-8001         TCGA-HZ-8002         TCGA-HZ-8003 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-HZ-8005         TCGA-HZ-8315         TCGA-HZ-8317 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-HZ-8519         TCGA-HZ-8636         TCGA-HZ-8638 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-HZ-A49G         TCGA-HZ-A49H         TCGA-HZ-A4BH 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-HZ-A4BK         TCGA-IB-7644         TCGA-IB-7645 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-IB-7646         TCGA-IB-7647         TCGA-IB-7649 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-IB-7651         TCGA-IB-7652         TCGA-IB-7885 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-IB-7886         TCGA-IB-7887         TCGA-IB-7888 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-IB-7889         TCGA-IB-7890         TCGA-IB-7891 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-IB-7893         TCGA-IB-7897         TCGA-IB-8126 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-IB-8127         TCGA-IB-A5SO         TCGA-IB-A5SP 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-IB-A5SQ         TCGA-IB-A5SS         TCGA-IB-A5ST 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A545         TCGA-H6-8124 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-H6-A45N         TCGA-HZ-7289         TCGA-HZ-7918 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-HZ-7919         TCGA-HZ-7922         TCGA-HZ-7923 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-HZ-7924         TCGA-HZ-7925         TCGA-HZ-7926 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-HZ-8001         TCGA-HZ-8002         TCGA-HZ-8003 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-HZ-8005         TCGA-HZ-8315         TCGA-HZ-8317 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-HZ-8519         TCGA-HZ-8636         TCGA-HZ-8638 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-HZ-A49G         TCGA-HZ-A49H         TCGA-HZ-A4BH 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-HZ-A4BK         TCGA-IB-7644         TCGA-IB-7645 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-IB-7646         TCGA-IB-7647         TCGA-IB-7649 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-IB-7651         TCGA-IB-7652         TCGA-IB-7885 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-IB-7886         TCGA-IB-7887         TCGA-IB-7888 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-IB-7889         TCGA-IB-7890         TCGA-IB-7891 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-IB-7893         TCGA-IB-7897         TCGA-IB-8126 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-IB-8127         TCGA-IB-A5SO         TCGA-IB-A5SP 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-IB-A5SQ         TCGA-IB-A5SS         TCGA-IB-A5ST 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A545         TCGA-H6-8124 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-H6-A45N         TCGA-HZ-7289         TCGA-HZ-7918 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-HZ-7919         TCGA-HZ-7922         TCGA-HZ-7923 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-HZ-7924         TCGA-HZ-7925         TCGA-HZ-7926 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-HZ-8001         TCGA-HZ-8002         TCGA-HZ-8003 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-HZ-8005         TCGA-HZ-8315         TCGA-HZ-8317 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-HZ-8519         TCGA-HZ-8636         TCGA-HZ-8638 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-HZ-A49G         TCGA-HZ-A49H         TCGA-HZ-A4BH 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-HZ-A4BK         TCGA-IB-7644         TCGA-IB-7645 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-IB-7646         TCGA-IB-7647         TCGA-IB-7649 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-IB-7651         TCGA-IB-7652         TCGA-IB-7885 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-IB-7886         TCGA-IB-7887         TCGA-IB-7888 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-IB-7889         TCGA-IB-7890         TCGA-IB-7891 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-IB-7893         TCGA-IB-7897         TCGA-IB-8126 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-IB-8127         TCGA-IB-A5SO         TCGA-IB-A5SP 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-IB-A5SQ         TCGA-IB-A5SS         TCGA-IB-A5ST 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
[1] "hr=" "2.9"
D20V2, continuous
                    vv
clus                 STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  13Q GAIN MUTATED          0        0         0         4         0        0
  13Q GAIN WILD-TYPE        2        3         7        37         2        2
D20V3, multiclass
                    vv
clus                 T1+T2 T3+T4
  13Q GAIN MUTATED       0     4
  13Q GAIN WILD-TYPE     6    47
D20V4, multiclass
       clus
vv      13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  T1+T2                0                  6
  T3+T4                4                 47
D20V5, binary
                    cls
clus                  0  1
  13Q GAIN MUTATED    0  4
  13Q GAIN WILD-TYPE 14 39
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  13Q GAIN MUTATED      0    4
  13Q GAIN WILD-TYPE   14   39
   clus
vv  13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  0                0                 14
  1                4                 39
                    vv
clus                 M0 M1 MX
  13Q GAIN MUTATED    2  0  2
  13Q GAIN WILD-TYPE 30  2 21
D20V6, multiclass
    clus
vv   13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  M0                2                 30
  M1                0                  2
  MX                2                 21
D20V7, binary
                    cls
clus                  0  1
  13Q GAIN MUTATED    3  1
  13Q GAIN WILD-TYPE 28 25
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  13Q GAIN MUTATED      3    1
  13Q GAIN WILD-TYPE   28   25
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  FEMALE                3                 28
  MALE                  1                 25
                    vv
clus                 PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  13Q GAIN MUTATED                                     3
  13Q GAIN WILD-TYPE                                  48
                    vv
clus                 PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  13Q GAIN MUTATED                                       1
  13Q GAIN WILD-TYPE                                     3
                    vv
clus                 PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  13Q GAIN MUTATED                                                  0
  13Q GAIN WILD-TYPE                                                1
D20V8, multiclass
                                                  clus
vv                                                 13Q GAIN MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                             3
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                0
                                                  clus
vv                                                 13Q GAIN WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                              48
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                             3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                  1
D20V9, continuous
[1] "Remove cluster labels:" "13Q GAIN MUTATED"      
clus
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                 1                 13 
        TCGA-F2-6880         TCGA-FB-A4P5         TCGA-H6-8124 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-IB-7644         TCGA-IB-7649         TCGA-IB-7651 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-IB-7885         TCGA-IB-7886         TCGA-IB-7887 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-IB-7891         TCGA-IB-8126         TCGA-IB-8127 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-IB-A5SS 
"13Q GAIN WILD-TYPE" 
D20V10, continuous
                    vv
clus                 R0 R1 RX
  13Q GAIN MUTATED    3  0  0
  13Q GAIN WILD-TYPE 29 21  2
D20V11, multiclass
    clus
vv   13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  R0                3                 29
  R1                0                 21
  RX                0                  2
D20V12, continuous

Clustering(21) Variable = 14Q GAIN MUTATION ANALYSIS
D21V1, survival
                    sevent
clus2                 0  1
  14Q GAIN MUTATED    5  1
  14Q GAIN WILD-TYPE 30 18
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
                 6                 48 
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
                 1                 18 
$`14Q GAIN MUTATED`
TCGA-FB-A545 TCGA-HZ-7922 TCGA-HZ-8636 TCGA-HZ-A4BH TCGA-IB-7886 TCGA-IB-8127 
        0.03         0.13         0.16         5.98         4.04        17.13 

$`14Q GAIN WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.96        11.84         7.07         5.03         5.19 
TCGA-FB-A4P5 TCGA-H6-8124 TCGA-H6-A45N TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 
        0.13        12.89         7.63         7.86         0.92         0.66 
TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 
        0.26        12.13        12.03         0.26         0.62         0.99 
TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8638 
        0.69         3.91         0.92         0.49         0.10         2.96 
TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 
        0.76         1.02         1.51        11.41        49.38         4.77 
TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7887 
       21.86        15.35        19.82        15.65        27.98         3.58 
TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 
       43.79        15.78        19.66        16.04         3.85        15.95 
TCGA-IB-8126 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST 
        0.56        10.82         9.83         7.20        15.12         0.26 

  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
              0.03               0.10 
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
             17.13              49.38 
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
             2.100              7.135 
[1] "0.0 - 17.1 (2.1)" "0.1 - 49.4 (7.1)"
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A545         TCGA-H6-8124 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-H6-A45N         TCGA-HZ-7289         TCGA-HZ-7918 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-HZ-7919         TCGA-HZ-7922         TCGA-HZ-7923 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-HZ-7924         TCGA-HZ-7925         TCGA-HZ-7926 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-HZ-8001         TCGA-HZ-8002         TCGA-HZ-8003 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-HZ-8005         TCGA-HZ-8315         TCGA-HZ-8317 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-HZ-8519         TCGA-HZ-8636         TCGA-HZ-8638 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-HZ-A49G         TCGA-HZ-A49H         TCGA-HZ-A4BH 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-HZ-A4BK         TCGA-IB-7644         TCGA-IB-7645 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-IB-7646         TCGA-IB-7647         TCGA-IB-7649 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-IB-7651         TCGA-IB-7652         TCGA-IB-7885 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-IB-7886         TCGA-IB-7887         TCGA-IB-7888 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-IB-7889         TCGA-IB-7890         TCGA-IB-7891 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-IB-7893         TCGA-IB-7897         TCGA-IB-8126 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-IB-8127         TCGA-IB-A5SO         TCGA-IB-A5SP 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-IB-A5SQ         TCGA-IB-A5SS         TCGA-IB-A5ST 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A545         TCGA-H6-8124 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-H6-A45N         TCGA-HZ-7289         TCGA-HZ-7918 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-HZ-7919         TCGA-HZ-7922         TCGA-HZ-7923 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-HZ-7924         TCGA-HZ-7925         TCGA-HZ-7926 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-HZ-8001         TCGA-HZ-8002         TCGA-HZ-8003 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-HZ-8005         TCGA-HZ-8315         TCGA-HZ-8317 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-HZ-8519         TCGA-HZ-8636         TCGA-HZ-8638 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-HZ-A49G         TCGA-HZ-A49H         TCGA-HZ-A4BH 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-HZ-A4BK         TCGA-IB-7644         TCGA-IB-7645 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-IB-7646         TCGA-IB-7647         TCGA-IB-7649 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-IB-7651         TCGA-IB-7652         TCGA-IB-7885 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-IB-7886         TCGA-IB-7887         TCGA-IB-7888 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-IB-7889         TCGA-IB-7890         TCGA-IB-7891 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-IB-7893         TCGA-IB-7897         TCGA-IB-8126 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-IB-8127         TCGA-IB-A5SO         TCGA-IB-A5SP 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-IB-A5SQ         TCGA-IB-A5SS         TCGA-IB-A5ST 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A545         TCGA-H6-8124 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-H6-A45N         TCGA-HZ-7289         TCGA-HZ-7918 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-HZ-7919         TCGA-HZ-7922         TCGA-HZ-7923 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-HZ-7924         TCGA-HZ-7925         TCGA-HZ-7926 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-HZ-8001         TCGA-HZ-8002         TCGA-HZ-8003 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-HZ-8005         TCGA-HZ-8315         TCGA-HZ-8317 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-HZ-8519         TCGA-HZ-8636         TCGA-HZ-8638 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-HZ-A49G         TCGA-HZ-A49H         TCGA-HZ-A4BH 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-HZ-A4BK         TCGA-IB-7644         TCGA-IB-7645 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-IB-7646         TCGA-IB-7647         TCGA-IB-7649 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-IB-7651         TCGA-IB-7652         TCGA-IB-7885 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-IB-7886         TCGA-IB-7887         TCGA-IB-7888 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-IB-7889         TCGA-IB-7890         TCGA-IB-7891 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-IB-7893         TCGA-IB-7897         TCGA-IB-8126 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-IB-8127         TCGA-IB-A5SO         TCGA-IB-A5SP 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-IB-A5SQ         TCGA-IB-A5SS         TCGA-IB-A5ST 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
[1] "hr=" "1"  
D21V2, continuous
                    vv
clus                 STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  14Q GAIN MUTATED          0        0         0         6         0        1
  14Q GAIN WILD-TYPE        2        3         7        35         2        1
D21V3, multiclass
                    vv
clus                 T1+T2 T3+T4
  14Q GAIN MUTATED       0     7
  14Q GAIN WILD-TYPE     6    44
D21V4, multiclass
       clus
vv      14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  T1+T2                0                  6
  T3+T4                7                 44
D21V5, binary
                    cls
clus                  0  1
  14Q GAIN MUTATED    1  6
  14Q GAIN WILD-TYPE 13 37
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  14Q GAIN MUTATED      1    6
  14Q GAIN WILD-TYPE   13   37
   clus
vv  14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  0                1                 13
  1                6                 37
                    vv
clus                 M0 M1 MX
  14Q GAIN MUTATED    3  1  3
  14Q GAIN WILD-TYPE 29  1 20
D21V6, multiclass
    clus
vv   14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  M0                3                 29
  M1                1                  1
  MX                3                 20
D21V7, binary
                    cls
clus                  0  1
  14Q GAIN MUTATED    4  3
  14Q GAIN WILD-TYPE 27 23
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  14Q GAIN MUTATED      4    3
  14Q GAIN WILD-TYPE   27   23
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  FEMALE                4                 27
  MALE                  3                 23
                    vv
clus                 PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  14Q GAIN MUTATED                                     7
  14Q GAIN WILD-TYPE                                  44
                    vv
clus                 PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  14Q GAIN MUTATED                                       0
  14Q GAIN WILD-TYPE                                     4
                    vv
clus                 PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  14Q GAIN MUTATED                                                  0
  14Q GAIN WILD-TYPE                                                1
D21V8, multiclass
                                                  clus
vv                                                 14Q GAIN MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                             7
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                0
                                                  clus
vv                                                 14Q GAIN WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                              44
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                             4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                  1
D21V9, continuous
[1] "Remove cluster labels:" "14Q GAIN MUTATED"      
clus
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
                 2                 12 
        TCGA-F2-6880         TCGA-FB-A4P5         TCGA-H6-8124 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-H6-A45N         TCGA-IB-7644         TCGA-IB-7649 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-IB-7651         TCGA-IB-7885         TCGA-IB-7887 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-IB-7891         TCGA-IB-8126         TCGA-IB-A5SS 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
D21V10, continuous
[1] "Remove cluster labels:" "14Q GAIN MUTATED"      
clus
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
                 2                  9 
        TCGA-FB-A4P5         TCGA-H6-8124         TCGA-IB-7644 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-IB-7649         TCGA-IB-7651         TCGA-IB-7885 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-IB-7891         TCGA-IB-8126         TCGA-IB-A5SS 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
                    vv
clus                 R0 R1 RX
  14Q GAIN MUTATED    2  4  0
  14Q GAIN WILD-TYPE 30 17  2
D21V11, multiclass
    clus
vv   14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  R0                2                 30
  R1                4                 17
  RX                0                  2
D21V12, continuous

Clustering(22) Variable = 15Q GAIN MUTATION ANALYSIS
D22V1, survival
                    sevent
clus2                 0  1
  15Q GAIN MUTATED    1  3
  15Q GAIN WILD-TYPE 34 16
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                 4                 50 
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                 3                 16 
$`15Q GAIN MUTATED`
TCGA-HZ-7922 TCGA-HZ-8005 TCGA-IB-7886 TCGA-IB-7889 
        0.13         3.91         4.04        15.78 

$`15Q GAIN WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.96        11.84         7.07         5.03         5.19 
TCGA-FB-A4P5 TCGA-FB-A545 TCGA-H6-8124 TCGA-H6-A45N TCGA-HZ-7289 TCGA-HZ-7918 
        0.13         0.03        12.89         7.63         7.86         0.92 
TCGA-HZ-7919 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 
        0.66         0.26        12.13        12.03         0.26         0.62 
TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8636 
        0.99         0.69         0.92         0.49         0.10         0.16 
TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 
        2.96         0.76         1.02         5.98         1.51        11.41 
TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 
       49.38         4.77        21.86        15.35        19.82        15.65 
TCGA-IB-7885 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 
       27.98         3.58        43.79        19.66        16.04         3.85 
TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ 
       15.95         0.56        17.13        10.82         9.83         7.20 
TCGA-IB-A5SS TCGA-IB-A5ST 
       15.12         0.26 

  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
              0.13               0.03 
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
             15.78              49.38 
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
             3.975              6.525 
[1] "0.1 - 15.8 (4.0)" "0.0 - 49.4 (6.5)"
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A545         TCGA-H6-8124 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-H6-A45N         TCGA-HZ-7289         TCGA-HZ-7918 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-HZ-7919         TCGA-HZ-7922         TCGA-HZ-7923 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-HZ-7924         TCGA-HZ-7925         TCGA-HZ-7926 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-HZ-8001         TCGA-HZ-8002         TCGA-HZ-8003 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-HZ-8005         TCGA-HZ-8315         TCGA-HZ-8317 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-HZ-8519         TCGA-HZ-8636         TCGA-HZ-8638 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-HZ-A49G         TCGA-HZ-A49H         TCGA-HZ-A4BH 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-HZ-A4BK         TCGA-IB-7644         TCGA-IB-7645 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-IB-7646         TCGA-IB-7647         TCGA-IB-7649 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-IB-7651         TCGA-IB-7652         TCGA-IB-7885 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-IB-7886         TCGA-IB-7887         TCGA-IB-7888 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-IB-7889         TCGA-IB-7890         TCGA-IB-7891 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-IB-7893         TCGA-IB-7897         TCGA-IB-8126 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-IB-8127         TCGA-IB-A5SO         TCGA-IB-A5SP 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-IB-A5SQ         TCGA-IB-A5SS         TCGA-IB-A5ST 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A545         TCGA-H6-8124 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-H6-A45N         TCGA-HZ-7289         TCGA-HZ-7918 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-HZ-7919         TCGA-HZ-7922         TCGA-HZ-7923 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-HZ-7924         TCGA-HZ-7925         TCGA-HZ-7926 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-HZ-8001         TCGA-HZ-8002         TCGA-HZ-8003 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-HZ-8005         TCGA-HZ-8315         TCGA-HZ-8317 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-HZ-8519         TCGA-HZ-8636         TCGA-HZ-8638 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-HZ-A49G         TCGA-HZ-A49H         TCGA-HZ-A4BH 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-HZ-A4BK         TCGA-IB-7644         TCGA-IB-7645 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-IB-7646         TCGA-IB-7647         TCGA-IB-7649 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-IB-7651         TCGA-IB-7652         TCGA-IB-7885 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-IB-7886         TCGA-IB-7887         TCGA-IB-7888 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-IB-7889         TCGA-IB-7890         TCGA-IB-7891 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-IB-7893         TCGA-IB-7897         TCGA-IB-8126 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-IB-8127         TCGA-IB-A5SO         TCGA-IB-A5SP 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-IB-A5SQ         TCGA-IB-A5SS         TCGA-IB-A5ST 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A545         TCGA-H6-8124 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-H6-A45N         TCGA-HZ-7289         TCGA-HZ-7918 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-HZ-7919         TCGA-HZ-7922         TCGA-HZ-7923 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-HZ-7924         TCGA-HZ-7925         TCGA-HZ-7926 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-HZ-8001         TCGA-HZ-8002         TCGA-HZ-8003 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-HZ-8005         TCGA-HZ-8315         TCGA-HZ-8317 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-HZ-8519         TCGA-HZ-8636         TCGA-HZ-8638 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-HZ-A49G         TCGA-HZ-A49H         TCGA-HZ-A4BH 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-HZ-A4BK         TCGA-IB-7644         TCGA-IB-7645 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-IB-7646         TCGA-IB-7647         TCGA-IB-7649 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-IB-7651         TCGA-IB-7652         TCGA-IB-7885 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-IB-7886         TCGA-IB-7887         TCGA-IB-7888 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-IB-7889         TCGA-IB-7890         TCGA-IB-7891 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-IB-7893         TCGA-IB-7897         TCGA-IB-8126 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-IB-8127         TCGA-IB-A5SO         TCGA-IB-A5SP 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-IB-A5SQ         TCGA-IB-A5SS         TCGA-IB-A5ST 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
[1] "hr=" "4.3"
D22V2, continuous
                    vv
clus                 STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  15Q GAIN MUTATED          0        0         0         4         0        0
  15Q GAIN WILD-TYPE        2        3         7        37         2        2
D22V3, multiclass
                    vv
clus                 T1+T2 T3+T4
  15Q GAIN MUTATED       0     4
  15Q GAIN WILD-TYPE     6    47
D22V4, multiclass
       clus
vv      15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  T1+T2                0                  6
  T3+T4                4                 47
D22V5, binary
                    cls
clus                  0  1
  15Q GAIN MUTATED    0  4
  15Q GAIN WILD-TYPE 14 39
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  15Q GAIN MUTATED      0    4
  15Q GAIN WILD-TYPE   14   39
   clus
vv  15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  0                0                 14
  1                4                 39
                    vv
clus                 M0 M1 MX
  15Q GAIN MUTATED    2  0  2
  15Q GAIN WILD-TYPE 30  2 21
D22V6, multiclass
    clus
vv   15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  M0                2                 30
  M1                0                  2
  MX                2                 21
D22V7, binary
                    cls
clus                  0  1
  15Q GAIN MUTATED    2  2
  15Q GAIN WILD-TYPE 29 24
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  15Q GAIN MUTATED      2    2
  15Q GAIN WILD-TYPE   29   24
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  FEMALE                2                 29
  MALE                  2                 24
                    vv
clus                 PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  15Q GAIN MUTATED                                     4
  15Q GAIN WILD-TYPE                                  47
                    vv
clus                 PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  15Q GAIN MUTATED                                       0
  15Q GAIN WILD-TYPE                                     4
                    vv
clus                 PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  15Q GAIN MUTATED                                                  0
  15Q GAIN WILD-TYPE                                                1
D22V8, multiclass
                                                  clus
vv                                                 15Q GAIN MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                             4
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                0
                                                  clus
vv                                                 15Q GAIN WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                              47
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                             4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                  1
D22V9, continuous
[1] "Remove cluster labels:" "15Q GAIN MUTATED"      
clus
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                 1                 13 
        TCGA-F2-6880         TCGA-FB-A4P5         TCGA-H6-8124 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-H6-A45N         TCGA-IB-7644         TCGA-IB-7649 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-IB-7651         TCGA-IB-7885         TCGA-IB-7887 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-IB-7891         TCGA-IB-8126         TCGA-IB-8127 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-IB-A5SS 
"15Q GAIN WILD-TYPE" 
D22V10, continuous
[1] "Remove cluster labels:" "15Q GAIN MUTATED"      
clus
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                 1                 10 
        TCGA-FB-A4P5         TCGA-H6-8124         TCGA-IB-7644 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-IB-7649         TCGA-IB-7651         TCGA-IB-7885 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-IB-7891         TCGA-IB-8126         TCGA-IB-8127 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-IB-A5SS 
"15Q GAIN WILD-TYPE" 
                    vv
clus                 R0 R1 RX
  15Q GAIN MUTATED    2  2  0
  15Q GAIN WILD-TYPE 30 19  2
D22V11, multiclass
    clus
vv   15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  R0                2                 30
  R1                2                 19
  RX                0                  2
D22V12, continuous

Clustering(23) Variable = 16P GAIN MUTATION ANALYSIS
D23V1, survival
                    sevent
clus2                 0  1
  16P GAIN MUTATED    4  2
  16P GAIN WILD-TYPE 31 17
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
                 6                 48 
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
                 2                 17 
$`16P GAIN MUTATED`
TCGA-HZ-7289 TCGA-HZ-8636 TCGA-IB-7886 TCGA-IB-7890 TCGA-IB-8127 TCGA-IB-A5SP 
        7.86         0.16         4.04        19.66        17.13         9.83 

$`16P GAIN WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.96        11.84         7.07         5.03         5.19 
TCGA-FB-A4P5 TCGA-FB-A545 TCGA-H6-8124 TCGA-H6-A45N TCGA-HZ-7918 TCGA-HZ-7919 
        0.13         0.03        12.89         7.63         0.92         0.66 
TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 
        0.13         0.26        12.13        12.03         0.26         0.62 
TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8519 
        0.99         0.69         3.91         0.92         0.49         0.10 
TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 
        2.96         0.76         1.02         5.98         1.51        11.41 
TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 
       49.38         4.77        21.86        15.35        19.82        15.65 
TCGA-IB-7885 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7891 TCGA-IB-7893 
       27.98         3.58        43.79        15.78        16.04         3.85 
TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-A5SO TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST 
       15.95         0.56        10.82         7.20        15.12         0.26 

  16P GAIN MUTATED 16P GAIN WILD-TYPE 
              0.16               0.03 
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
             19.66              49.38 
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
             8.845              5.110 
[1] "0.2 - 19.7 (8.8)" "0.0 - 49.4 (5.1)"
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A545         TCGA-H6-8124 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-H6-A45N         TCGA-HZ-7289         TCGA-HZ-7918 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-HZ-7919         TCGA-HZ-7922         TCGA-HZ-7923 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-HZ-7924         TCGA-HZ-7925         TCGA-HZ-7926 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-HZ-8001         TCGA-HZ-8002         TCGA-HZ-8003 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-HZ-8005         TCGA-HZ-8315         TCGA-HZ-8317 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-HZ-8519         TCGA-HZ-8636         TCGA-HZ-8638 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-HZ-A49G         TCGA-HZ-A49H         TCGA-HZ-A4BH 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-HZ-A4BK         TCGA-IB-7644         TCGA-IB-7645 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-IB-7646         TCGA-IB-7647         TCGA-IB-7649 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-IB-7651         TCGA-IB-7652         TCGA-IB-7885 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-IB-7886         TCGA-IB-7887         TCGA-IB-7888 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-IB-7889         TCGA-IB-7890         TCGA-IB-7891 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-IB-7893         TCGA-IB-7897         TCGA-IB-8126 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-IB-8127         TCGA-IB-A5SO         TCGA-IB-A5SP 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-IB-A5SQ         TCGA-IB-A5SS         TCGA-IB-A5ST 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A545         TCGA-H6-8124 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-H6-A45N         TCGA-HZ-7289         TCGA-HZ-7918 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-HZ-7919         TCGA-HZ-7922         TCGA-HZ-7923 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-HZ-7924         TCGA-HZ-7925         TCGA-HZ-7926 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-HZ-8001         TCGA-HZ-8002         TCGA-HZ-8003 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-HZ-8005         TCGA-HZ-8315         TCGA-HZ-8317 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-HZ-8519         TCGA-HZ-8636         TCGA-HZ-8638 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-HZ-A49G         TCGA-HZ-A49H         TCGA-HZ-A4BH 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-HZ-A4BK         TCGA-IB-7644         TCGA-IB-7645 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-IB-7646         TCGA-IB-7647         TCGA-IB-7649 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-IB-7651         TCGA-IB-7652         TCGA-IB-7885 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-IB-7886         TCGA-IB-7887         TCGA-IB-7888 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-IB-7889         TCGA-IB-7890         TCGA-IB-7891 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-IB-7893         TCGA-IB-7897         TCGA-IB-8126 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-IB-8127         TCGA-IB-A5SO         TCGA-IB-A5SP 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-IB-A5SQ         TCGA-IB-A5SS         TCGA-IB-A5ST 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A545         TCGA-H6-8124 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-H6-A45N         TCGA-HZ-7289         TCGA-HZ-7918 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-HZ-7919         TCGA-HZ-7922         TCGA-HZ-7923 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-HZ-7924         TCGA-HZ-7925         TCGA-HZ-7926 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-HZ-8001         TCGA-HZ-8002         TCGA-HZ-8003 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-HZ-8005         TCGA-HZ-8315         TCGA-HZ-8317 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-HZ-8519         TCGA-HZ-8636         TCGA-HZ-8638 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-HZ-A49G         TCGA-HZ-A49H         TCGA-HZ-A4BH 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-HZ-A4BK         TCGA-IB-7644         TCGA-IB-7645 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-IB-7646         TCGA-IB-7647         TCGA-IB-7649 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-IB-7651         TCGA-IB-7652         TCGA-IB-7885 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-IB-7886         TCGA-IB-7887         TCGA-IB-7888 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-IB-7889         TCGA-IB-7890         TCGA-IB-7891 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-IB-7893         TCGA-IB-7897         TCGA-IB-8126 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-IB-8127         TCGA-IB-A5SO         TCGA-IB-A5SP 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-IB-A5SQ         TCGA-IB-A5SS         TCGA-IB-A5ST 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D23V2, continuous
                    vv
clus                 STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  16P GAIN MUTATED          0        1         1         3         0        1
  16P GAIN WILD-TYPE        2        2         6        38         2        1
D23V3, multiclass
                    vv
clus                 T1+T2 T3+T4
  16P GAIN MUTATED       1     5
  16P GAIN WILD-TYPE     5    46
D23V4, multiclass
       clus
vv      16P GAIN MUTATED 16P GAIN WILD-TYPE
  T1+T2                1                  5
  T3+T4                5                 46
D23V5, binary
                    cls
clus                  0  1
  16P GAIN MUTATED    3  3
  16P GAIN WILD-TYPE 11 40
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16P GAIN MUTATED      3    3
  16P GAIN WILD-TYPE   11   40
   clus
vv  16P GAIN MUTATED 16P GAIN WILD-TYPE
  0                3                 11
  1                3                 40
                    vv
clus                 M0 M1 MX
  16P GAIN MUTATED    4  1  1
  16P GAIN WILD-TYPE 28  1 22
D23V6, multiclass
    clus
vv   16P GAIN MUTATED 16P GAIN WILD-TYPE
  M0                4                 28
  M1                1                  1
  MX                1                 22
D23V7, binary
                    cls
clus                  0  1
  16P GAIN MUTATED    1  5
  16P GAIN WILD-TYPE 30 21
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16P GAIN MUTATED      1    5
  16P GAIN WILD-TYPE   30   21
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  FEMALE                1                 30
  MALE                  5                 21
                    vv
clus                 PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  16P GAIN MUTATED                                     5
  16P GAIN WILD-TYPE                                  46
                    vv
clus                 PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  16P GAIN MUTATED                                       1
  16P GAIN WILD-TYPE                                     3
                    vv
clus                 PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  16P GAIN MUTATED                                                  0
  16P GAIN WILD-TYPE                                                1
D23V8, multiclass
                                                  clus
vv                                                 16P GAIN MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                             5
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                0
                                                  clus
vv                                                 16P GAIN WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                              46
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                             3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                  1
D23V9, continuous
[1] "Remove cluster labels:" "16P GAIN MUTATED"      
clus
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
                 2                 12 
        TCGA-F2-6880         TCGA-FB-A4P5         TCGA-H6-8124 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-H6-A45N         TCGA-IB-7644         TCGA-IB-7649 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-IB-7651         TCGA-IB-7885         TCGA-IB-7887 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-IB-7891         TCGA-IB-8126         TCGA-IB-A5SS 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
D23V10, continuous
[1] "Remove cluster labels:" "16P GAIN MUTATED"      
clus
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
                 2                  9 
        TCGA-FB-A4P5         TCGA-H6-8124         TCGA-IB-7644 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-IB-7649         TCGA-IB-7651         TCGA-IB-7885 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-IB-7891         TCGA-IB-8126         TCGA-IB-A5SS 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
                    vv
clus                 R0 R1 RX
  16P GAIN MUTATED    1  4  1
  16P GAIN WILD-TYPE 31 17  1
D23V11, multiclass
    clus
vv   16P GAIN MUTATED 16P GAIN WILD-TYPE
  R0                1                 31
  R1                4                 17
  RX                1                  1
D23V12, continuous

Clustering(24) Variable = 16Q GAIN MUTATION ANALYSIS
D24V1, survival
                    sevent
clus2                 0  1
  16Q GAIN MUTATED    5  2
  16Q GAIN WILD-TYPE 30 17
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                 7                 47 
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                 2                 17 
$`16Q GAIN MUTATED`
TCGA-FB-A545 TCGA-HZ-8636 TCGA-HZ-A4BK TCGA-IB-7886 TCGA-IB-7890 TCGA-IB-8127 
        0.03         0.16         1.51         4.04        19.66        17.13 
TCGA-IB-A5SP 
        9.83 

$`16Q GAIN WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.96        11.84         7.07         5.03         5.19 
TCGA-FB-A4P5 TCGA-H6-8124 TCGA-H6-A45N TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 
        0.13        12.89         7.63         7.86         0.92         0.66 
TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 
        0.13         0.26        12.13        12.03         0.26         0.62 
TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8519 
        0.99         0.69         3.91         0.92         0.49         0.10 
TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-IB-7644 TCGA-IB-7645 
        2.96         0.76         1.02         5.98        11.41        49.38 
TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 
        4.77        21.86        15.35        19.82        15.65        27.98 
TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 
        3.58        43.79        15.78        16.04         3.85        15.95 
TCGA-IB-8126 TCGA-IB-A5SO TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST 
        0.56        10.82         7.20        15.12         0.26 

  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
              0.03               0.10 
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
             19.66              49.38 
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
              4.04               5.98 
[1] "0.0 - 19.7 (4.0)" "0.1 - 49.4 (6.0)"
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A545         TCGA-H6-8124 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-H6-A45N         TCGA-HZ-7289         TCGA-HZ-7918 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-HZ-7919         TCGA-HZ-7922         TCGA-HZ-7923 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-HZ-7924         TCGA-HZ-7925         TCGA-HZ-7926 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-HZ-8001         TCGA-HZ-8002         TCGA-HZ-8003 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-HZ-8005         TCGA-HZ-8315         TCGA-HZ-8317 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-HZ-8519         TCGA-HZ-8636         TCGA-HZ-8638 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-HZ-A49G         TCGA-HZ-A49H         TCGA-HZ-A4BH 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-HZ-A4BK         TCGA-IB-7644         TCGA-IB-7645 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-IB-7646         TCGA-IB-7647         TCGA-IB-7649 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-IB-7651         TCGA-IB-7652         TCGA-IB-7885 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-IB-7886         TCGA-IB-7887         TCGA-IB-7888 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-IB-7889         TCGA-IB-7890         TCGA-IB-7891 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-IB-7893         TCGA-IB-7897         TCGA-IB-8126 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-IB-8127         TCGA-IB-A5SO         TCGA-IB-A5SP 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-IB-A5SQ         TCGA-IB-A5SS         TCGA-IB-A5ST 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A545         TCGA-H6-8124 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-H6-A45N         TCGA-HZ-7289         TCGA-HZ-7918 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-HZ-7919         TCGA-HZ-7922         TCGA-HZ-7923 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-HZ-7924         TCGA-HZ-7925         TCGA-HZ-7926 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-HZ-8001         TCGA-HZ-8002         TCGA-HZ-8003 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-HZ-8005         TCGA-HZ-8315         TCGA-HZ-8317 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-HZ-8519         TCGA-HZ-8636         TCGA-HZ-8638 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-HZ-A49G         TCGA-HZ-A49H         TCGA-HZ-A4BH 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-HZ-A4BK         TCGA-IB-7644         TCGA-IB-7645 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-IB-7646         TCGA-IB-7647         TCGA-IB-7649 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-IB-7651         TCGA-IB-7652         TCGA-IB-7885 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-IB-7886         TCGA-IB-7887         TCGA-IB-7888 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-IB-7889         TCGA-IB-7890         TCGA-IB-7891 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-IB-7893         TCGA-IB-7897         TCGA-IB-8126 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-IB-8127         TCGA-IB-A5SO         TCGA-IB-A5SP 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-IB-A5SQ         TCGA-IB-A5SS         TCGA-IB-A5ST 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A545         TCGA-H6-8124 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-H6-A45N         TCGA-HZ-7289         TCGA-HZ-7918 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-HZ-7919         TCGA-HZ-7922         TCGA-HZ-7923 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-HZ-7924         TCGA-HZ-7925         TCGA-HZ-7926 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-HZ-8001         TCGA-HZ-8002         TCGA-HZ-8003 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-HZ-8005         TCGA-HZ-8315         TCGA-HZ-8317 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-HZ-8519         TCGA-HZ-8636         TCGA-HZ-8638 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-HZ-A49G         TCGA-HZ-A49H         TCGA-HZ-A4BH 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-HZ-A4BK         TCGA-IB-7644         TCGA-IB-7645 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-IB-7646         TCGA-IB-7647         TCGA-IB-7649 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-IB-7651         TCGA-IB-7652         TCGA-IB-7885 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-IB-7886         TCGA-IB-7887         TCGA-IB-7888 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-IB-7889         TCGA-IB-7890         TCGA-IB-7891 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-IB-7893         TCGA-IB-7897         TCGA-IB-8126 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-IB-8127         TCGA-IB-A5SO         TCGA-IB-A5SP 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-IB-A5SQ         TCGA-IB-A5SS         TCGA-IB-A5ST 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D24V2, continuous
                    vv
clus                 STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  16Q GAIN MUTATED          0        1         1         4         0        1
  16Q GAIN WILD-TYPE        2        2         6        37         2        1
D24V3, multiclass
                    vv
clus                 T1+T2 T3+T4
  16Q GAIN MUTATED       1     6
  16Q GAIN WILD-TYPE     5    45
D24V4, multiclass
       clus
vv      16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  T1+T2                1                  5
  T3+T4                6                 45
D24V5, binary
                    cls
clus                  0  1
  16Q GAIN MUTATED    3  4
  16Q GAIN WILD-TYPE 11 39
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16Q GAIN MUTATED      3    4
  16Q GAIN WILD-TYPE   11   39
   clus
vv  16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  0                3                 11
  1                4                 39
                    vv
clus                 M0 M1 MX
  16Q GAIN MUTATED    5  1  1
  16Q GAIN WILD-TYPE 27  1 22
D24V6, multiclass
    clus
vv   16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  M0                5                 27
  M1                1                  1
  MX                1                 22
D24V7, binary
                    cls
clus                  0  1
  16Q GAIN MUTATED    2  5
  16Q GAIN WILD-TYPE 29 21
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16Q GAIN MUTATED      2    5
  16Q GAIN WILD-TYPE   29   21
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  FEMALE                2                 29
  MALE                  5                 21
                    vv
clus                 PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  16Q GAIN MUTATED                                     6
  16Q GAIN WILD-TYPE                                  45
                    vv
clus                 PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  16Q GAIN MUTATED                                       1
  16Q GAIN WILD-TYPE                                     3
                    vv
clus                 PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  16Q GAIN MUTATED                                                  0
  16Q GAIN WILD-TYPE                                                1
D24V8, multiclass
                                                  clus
vv                                                 16Q GAIN MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                             6
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                0
                                                  clus
vv                                                 16Q GAIN WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                              45
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                             3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                  1
D24V9, continuous
[1] "Remove cluster labels:" "16Q GAIN MUTATED"      
clus
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                 2                 12 
        TCGA-F2-6880         TCGA-FB-A4P5         TCGA-H6-8124 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-H6-A45N         TCGA-IB-7644         TCGA-IB-7649 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-IB-7651         TCGA-IB-7885         TCGA-IB-7887 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-IB-7891         TCGA-IB-8126         TCGA-IB-A5SS 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
D24V10, continuous
[1] "Remove cluster labels:" "16Q GAIN MUTATED"      
clus
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                 2                  9 
        TCGA-FB-A4P5         TCGA-H6-8124         TCGA-IB-7644 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-IB-7649         TCGA-IB-7651         TCGA-IB-7885 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-IB-7891         TCGA-IB-8126         TCGA-IB-A5SS 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
                    vv
clus                 R0 R1 RX
  16Q GAIN MUTATED    1  5  0
  16Q GAIN WILD-TYPE 31 16  2
D24V11, multiclass
    clus
vv   16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  R0                1                 31
  R1                5                 16
  RX                0                  2
D24V12, continuous

Clustering(25) Variable = 17Q GAIN MUTATION ANALYSIS
D25V1, survival
                    sevent
clus2                 0  1
  17Q GAIN MUTATED    1  2
  17Q GAIN WILD-TYPE 34 17
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
                 3                 51 
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
                 2                 17 
$`17Q GAIN MUTATED`
TCGA-FB-A545 TCGA-IB-7646 TCGA-IB-7893 
        0.03         4.77         3.85 

$`17Q GAIN WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.96        11.84         7.07         5.03         5.19 
TCGA-FB-A4P5 TCGA-H6-8124 TCGA-H6-A45N TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 
        0.13        12.89         7.63         7.86         0.92         0.66 
TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 
        0.13         0.26        12.13        12.03         0.26         0.62 
TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8519 
        0.99         0.69         3.91         0.92         0.49         0.10 
TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK 
        0.16         2.96         0.76         1.02         5.98         1.51 
TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 
       11.41        49.38        21.86        15.35        19.82        15.65 
TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 
       27.98         4.04         3.58        43.79        15.78        19.66 
TCGA-IB-7891 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP 
       16.04        15.95         0.56        17.13        10.82         9.83 
TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST 
        7.20        15.12         0.26 

  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
              0.03               0.10 
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
              4.77              49.38 
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
              3.85               7.07 
[1] "0.0 - 4.8 (3.9)"  "0.1 - 49.4 (7.1)"
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A545         TCGA-H6-8124 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-H6-A45N         TCGA-HZ-7289         TCGA-HZ-7918 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-HZ-7919         TCGA-HZ-7922         TCGA-HZ-7923 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-HZ-7924         TCGA-HZ-7925         TCGA-HZ-7926 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-HZ-8001         TCGA-HZ-8002         TCGA-HZ-8003 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-HZ-8005         TCGA-HZ-8315         TCGA-HZ-8317 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-HZ-8519         TCGA-HZ-8636         TCGA-HZ-8638 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-HZ-A49G         TCGA-HZ-A49H         TCGA-HZ-A4BH 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-HZ-A4BK         TCGA-IB-7644         TCGA-IB-7645 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-IB-7646         TCGA-IB-7647         TCGA-IB-7649 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-IB-7651         TCGA-IB-7652         TCGA-IB-7885 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-IB-7886         TCGA-IB-7887         TCGA-IB-7888 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-IB-7889         TCGA-IB-7890         TCGA-IB-7891 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-IB-7893         TCGA-IB-7897         TCGA-IB-8126 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-IB-8127         TCGA-IB-A5SO         TCGA-IB-A5SP 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-IB-A5SQ         TCGA-IB-A5SS         TCGA-IB-A5ST 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A545         TCGA-H6-8124 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-H6-A45N         TCGA-HZ-7289         TCGA-HZ-7918 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-HZ-7919         TCGA-HZ-7922         TCGA-HZ-7923 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-HZ-7924         TCGA-HZ-7925         TCGA-HZ-7926 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-HZ-8001         TCGA-HZ-8002         TCGA-HZ-8003 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-HZ-8005         TCGA-HZ-8315         TCGA-HZ-8317 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-HZ-8519         TCGA-HZ-8636         TCGA-HZ-8638 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-HZ-A49G         TCGA-HZ-A49H         TCGA-HZ-A4BH 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-HZ-A4BK         TCGA-IB-7644         TCGA-IB-7645 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-IB-7646         TCGA-IB-7647         TCGA-IB-7649 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-IB-7651         TCGA-IB-7652         TCGA-IB-7885 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-IB-7886         TCGA-IB-7887         TCGA-IB-7888 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-IB-7889         TCGA-IB-7890         TCGA-IB-7891 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-IB-7893         TCGA-IB-7897         TCGA-IB-8126 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-IB-8127         TCGA-IB-A5SO         TCGA-IB-A5SP 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-IB-A5SQ         TCGA-IB-A5SS         TCGA-IB-A5ST 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A545         TCGA-H6-8124 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-H6-A45N         TCGA-HZ-7289         TCGA-HZ-7918 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-HZ-7919         TCGA-HZ-7922         TCGA-HZ-7923 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-HZ-7924         TCGA-HZ-7925         TCGA-HZ-7926 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-HZ-8001         TCGA-HZ-8002         TCGA-HZ-8003 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-HZ-8005         TCGA-HZ-8315         TCGA-HZ-8317 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-HZ-8519         TCGA-HZ-8636         TCGA-HZ-8638 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-HZ-A49G         TCGA-HZ-A49H         TCGA-HZ-A4BH 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-HZ-A4BK         TCGA-IB-7644         TCGA-IB-7645 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-IB-7646         TCGA-IB-7647         TCGA-IB-7649 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-IB-7651         TCGA-IB-7652         TCGA-IB-7885 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-IB-7886         TCGA-IB-7887         TCGA-IB-7888 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-IB-7889         TCGA-IB-7890         TCGA-IB-7891 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-IB-7893         TCGA-IB-7897         TCGA-IB-8126 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-IB-8127         TCGA-IB-A5SO         TCGA-IB-A5SP 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-IB-A5SQ         TCGA-IB-A5SS         TCGA-IB-A5ST 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
[1] "hr=" "15" 
D25V2, continuous
                    vv
clus                 STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  17Q GAIN MUTATED          0        0         1         2         0        0
  17Q GAIN WILD-TYPE        2        3         6        39         2        2
D25V3, multiclass
                    vv
clus                 T1+T2 T3+T4
  17Q GAIN MUTATED       0     3
  17Q GAIN WILD-TYPE     6    48
D25V4, multiclass
       clus
vv      17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  T1+T2                0                  6
  T3+T4                3                 48
D25V5, binary
                    cls
clus                  0  1
  17Q GAIN MUTATED    1  2
  17Q GAIN WILD-TYPE 13 41
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17Q GAIN MUTATED      1    2
  17Q GAIN WILD-TYPE   13   41
   clus
vv  17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  0                1                 13
  1                2                 41
                    vv
clus                 M0 M1 MX
  17Q GAIN MUTATED    3  0  0
  17Q GAIN WILD-TYPE 29  2 23
D25V6, multiclass
    clus
vv   17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  M0                3                 29
  M1                0                  2
  MX                0                 23
D25V7, binary
                    cls
clus                  0  1
  17Q GAIN MUTATED    1  2
  17Q GAIN WILD-TYPE 30 24
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17Q GAIN MUTATED      1    2
  17Q GAIN WILD-TYPE   30   24
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  FEMALE                1                 30
  MALE                  2                 24
                    vv
clus                 PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  17Q GAIN MUTATED                                     3
  17Q GAIN WILD-TYPE                                  48
                    vv
clus                 PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  17Q GAIN MUTATED                                       0
  17Q GAIN WILD-TYPE                                     4
                    vv
clus                 PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  17Q GAIN MUTATED                                                  0
  17Q GAIN WILD-TYPE                                                1
D25V8, multiclass
                                                  clus
vv                                                 17Q GAIN MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                             3
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                0
                                                  clus
vv                                                 17Q GAIN WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                              48
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                             4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                  1
D25V9, continuous
D25V10, continuous
                    vv
clus                 R0 R1 RX
  17Q GAIN MUTATED    1  1  0
  17Q GAIN WILD-TYPE 31 20  2
D25V11, multiclass
[1] "Remove cluster labels:" "17Q GAIN MUTATED"      
clus
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
                 2                 53 
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-H6-8124         TCGA-HZ-7289 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-HZ-7918         TCGA-HZ-7919         TCGA-HZ-7920 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-HZ-7922         TCGA-HZ-7923         TCGA-HZ-7924 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-HZ-7925         TCGA-HZ-7926         TCGA-HZ-8001 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-HZ-8002         TCGA-HZ-8003         TCGA-HZ-8005 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-HZ-8315         TCGA-HZ-8317         TCGA-HZ-8519 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-HZ-8636         TCGA-HZ-8637         TCGA-HZ-8638 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-HZ-A49G         TCGA-HZ-A49H         TCGA-HZ-A49I 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-HZ-A4BH         TCGA-HZ-A4BK         TCGA-IB-7644 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-IB-7645         TCGA-IB-7647         TCGA-IB-7649 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-IB-7651         TCGA-IB-7652         TCGA-IB-7885 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-IB-7886         TCGA-IB-7887         TCGA-IB-7888 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-IB-7889         TCGA-IB-7890         TCGA-IB-7891 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-IB-7897         TCGA-IB-8126         TCGA-IB-8127 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-IB-A5SO         TCGA-IB-A5SP         TCGA-IB-A5SQ 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-IB-A5SS         TCGA-IB-A5ST 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
D25V12, continuous

Clustering(26) Variable = 18P GAIN MUTATION ANALYSIS
D26V1, survival
                    sevent
clus2                 0  1
  18P GAIN MUTATED    5  1
  18P GAIN WILD-TYPE 30 18
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                 6                 48 
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                 1                 18 
$`18P GAIN MUTATED`
TCGA-HZ-7289 TCGA-HZ-7919 TCGA-HZ-7925 TCGA-HZ-8636 TCGA-IB-7893 TCGA-IB-8127 
        7.86         0.66        12.03         0.16         3.85        17.13 

$`18P GAIN WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.96        11.84         7.07         5.03         5.19 
TCGA-FB-A4P5 TCGA-FB-A545 TCGA-H6-8124 TCGA-H6-A45N TCGA-HZ-7918 TCGA-HZ-7922 
        0.13         0.03        12.89         7.63         0.92         0.13 
TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 
        0.26        12.13         0.26         0.62         0.99         0.69 
TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8638 TCGA-HZ-A49G 
        3.91         0.92         0.49         0.10         2.96         0.76 
TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 
        1.02         5.98         1.51        11.41        49.38         4.77 
TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 
       21.86        15.35        19.82        15.65        27.98         4.04 
TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7897 
        3.58        43.79        15.78        19.66        16.04        15.95 
TCGA-IB-8126 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST 
        0.56        10.82         9.83         7.20        15.12         0.26 

  18P GAIN MUTATED 18P GAIN WILD-TYPE 
              0.16               0.03 
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
             17.13              49.38 
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
             5.855              5.585 
[1] "0.2 - 17.1 (5.9)" "0.0 - 49.4 (5.6)"
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A545         TCGA-H6-8124 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-H6-A45N         TCGA-HZ-7289         TCGA-HZ-7918 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-HZ-7919         TCGA-HZ-7922         TCGA-HZ-7923 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-HZ-7924         TCGA-HZ-7925         TCGA-HZ-7926 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-HZ-8001         TCGA-HZ-8002         TCGA-HZ-8003 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-HZ-8005         TCGA-HZ-8315         TCGA-HZ-8317 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-HZ-8519         TCGA-HZ-8636         TCGA-HZ-8638 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-HZ-A49G         TCGA-HZ-A49H         TCGA-HZ-A4BH 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-HZ-A4BK         TCGA-IB-7644         TCGA-IB-7645 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-IB-7646         TCGA-IB-7647         TCGA-IB-7649 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-IB-7651         TCGA-IB-7652         TCGA-IB-7885 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-IB-7886         TCGA-IB-7887         TCGA-IB-7888 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-IB-7889         TCGA-IB-7890         TCGA-IB-7891 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-IB-7893         TCGA-IB-7897         TCGA-IB-8126 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-IB-8127         TCGA-IB-A5SO         TCGA-IB-A5SP 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-IB-A5SQ         TCGA-IB-A5SS         TCGA-IB-A5ST 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A545         TCGA-H6-8124 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-H6-A45N         TCGA-HZ-7289         TCGA-HZ-7918 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-HZ-7919         TCGA-HZ-7922         TCGA-HZ-7923 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-HZ-7924         TCGA-HZ-7925         TCGA-HZ-7926 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-HZ-8001         TCGA-HZ-8002         TCGA-HZ-8003 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-HZ-8005         TCGA-HZ-8315         TCGA-HZ-8317 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-HZ-8519         TCGA-HZ-8636         TCGA-HZ-8638 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-HZ-A49G         TCGA-HZ-A49H         TCGA-HZ-A4BH 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-HZ-A4BK         TCGA-IB-7644         TCGA-IB-7645 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-IB-7646         TCGA-IB-7647         TCGA-IB-7649 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-IB-7651         TCGA-IB-7652         TCGA-IB-7885 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-IB-7886         TCGA-IB-7887         TCGA-IB-7888 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-IB-7889         TCGA-IB-7890         TCGA-IB-7891 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-IB-7893         TCGA-IB-7897         TCGA-IB-8126 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-IB-8127         TCGA-IB-A5SO         TCGA-IB-A5SP 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-IB-A5SQ         TCGA-IB-A5SS         TCGA-IB-A5ST 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A545         TCGA-H6-8124 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-H6-A45N         TCGA-HZ-7289         TCGA-HZ-7918 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-HZ-7919         TCGA-HZ-7922         TCGA-HZ-7923 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-HZ-7924         TCGA-HZ-7925         TCGA-HZ-7926 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-HZ-8001         TCGA-HZ-8002         TCGA-HZ-8003 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-HZ-8005         TCGA-HZ-8315         TCGA-HZ-8317 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-HZ-8519         TCGA-HZ-8636         TCGA-HZ-8638 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-HZ-A49G         TCGA-HZ-A49H         TCGA-HZ-A4BH 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-HZ-A4BK         TCGA-IB-7644         TCGA-IB-7645 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-IB-7646         TCGA-IB-7647         TCGA-IB-7649 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-IB-7651         TCGA-IB-7652         TCGA-IB-7885 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-IB-7886         TCGA-IB-7887         TCGA-IB-7888 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-IB-7889         TCGA-IB-7890         TCGA-IB-7891 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-IB-7893         TCGA-IB-7897         TCGA-IB-8126 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-IB-8127         TCGA-IB-A5SO         TCGA-IB-A5SP 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-IB-A5SQ         TCGA-IB-A5SS         TCGA-IB-A5ST 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
[1] "hr=" "1.5"
D26V2, continuous
                    vv
clus                 STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  18P GAIN MUTATED          0        0         1         4         0        1
  18P GAIN WILD-TYPE        2        3         6        37         2        1
D26V3, multiclass
                    vv
clus                 T1+T2 T3+T4
  18P GAIN MUTATED       0     6
  18P GAIN WILD-TYPE     6    45
D26V4, multiclass
       clus
vv      18P GAIN MUTATED 18P GAIN WILD-TYPE
  T1+T2                0                  6
  T3+T4                6                 45
D26V5, binary
                    cls
clus                  0  1
  18P GAIN MUTATED    2  4
  18P GAIN WILD-TYPE 12 39
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18P GAIN MUTATED      2    4
  18P GAIN WILD-TYPE   12   39
   clus
vv  18P GAIN MUTATED 18P GAIN WILD-TYPE
  0                2                 12
  1                4                 39
                    vv
clus                 M0 M1 MX
  18P GAIN MUTATED    3  1  2
  18P GAIN WILD-TYPE 29  1 21
D26V6, multiclass
    clus
vv   18P GAIN MUTATED 18P GAIN WILD-TYPE
  M0                3                 29
  M1                1                  1
  MX                2                 21
D26V7, binary
                    cls
clus                  0  1
  18P GAIN MUTATED    2  4
  18P GAIN WILD-TYPE 29 22
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18P GAIN MUTATED      2    4
  18P GAIN WILD-TYPE   29   22
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  FEMALE                2                 29
  MALE                  4                 22
                    vv
clus                 PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  18P GAIN MUTATED                                     5
  18P GAIN WILD-TYPE                                  46
                    vv
clus                 PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  18P GAIN MUTATED                                       1
  18P GAIN WILD-TYPE                                     3
                    vv
clus                 PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  18P GAIN MUTATED                                                  0
  18P GAIN WILD-TYPE                                                1
D26V8, multiclass
                                                  clus
vv                                                 18P GAIN MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                             5
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                0
                                                  clus
vv                                                 18P GAIN WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                              46
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                             3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                  1
D26V9, continuous
[1] "Remove cluster labels:" "18P GAIN MUTATED"      
clus
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                 1                 13 
        TCGA-F2-6880         TCGA-FB-A4P5         TCGA-H6-8124 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-H6-A45N         TCGA-IB-7644         TCGA-IB-7649 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-IB-7651         TCGA-IB-7885         TCGA-IB-7886 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-IB-7887         TCGA-IB-7891         TCGA-IB-8126 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-IB-A5SS 
"18P GAIN WILD-TYPE" 
D26V10, continuous
[1] "Remove cluster labels:" "18P GAIN MUTATED"      
clus
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                 1                 10 
        TCGA-FB-A4P5         TCGA-H6-8124         TCGA-IB-7644 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-IB-7649         TCGA-IB-7651         TCGA-IB-7885 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-IB-7886         TCGA-IB-7891         TCGA-IB-8126 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-IB-A5SS 
"18P GAIN WILD-TYPE" 
                    vv
clus                 R0 R1 RX
  18P GAIN MUTATED    2  3  1
  18P GAIN WILD-TYPE 30 18  1
D26V11, multiclass
    clus
vv   18P GAIN MUTATED 18P GAIN WILD-TYPE
  R0                2                 30
  R1                3                 18
  RX                1                  1
D26V12, continuous

Clustering(27) Variable = 19P GAIN MUTATION ANALYSIS
D27V1, survival
                    sevent
clus2                 0  1
  19P GAIN MUTATED    2  1
  19P GAIN WILD-TYPE 33 18
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                 3                 51 
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                 1                 18 
$`19P GAIN MUTATED`
TCGA-FB-A545 TCGA-IB-7886 TCGA-IB-8127 
        0.03         4.04        17.13 

$`19P GAIN WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.96        11.84         7.07         5.03         5.19 
TCGA-FB-A4P5 TCGA-H6-8124 TCGA-H6-A45N TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 
        0.13        12.89         7.63         7.86         0.92         0.66 
TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 
        0.13         0.26        12.13        12.03         0.26         0.62 
TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8519 
        0.99         0.69         3.91         0.92         0.49         0.10 
TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK 
        0.16         2.96         0.76         1.02         5.98         1.51 
TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 
       11.41        49.38         4.77        21.86        15.35        19.82 
TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 
       15.65        27.98         3.58        43.79        15.78        19.66 
TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-A5SO TCGA-IB-A5SP 
       16.04         3.85        15.95         0.56        10.82         9.83 
TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST 
        7.20        15.12         0.26 

  19P GAIN MUTATED 19P GAIN WILD-TYPE 
              0.03               0.10 
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
             17.13              49.38 
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
              4.04               5.98 
[1] "0.0 - 17.1 (4.0)" "0.1 - 49.4 (6.0)"
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A545         TCGA-H6-8124 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-H6-A45N         TCGA-HZ-7289         TCGA-HZ-7918 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-HZ-7919         TCGA-HZ-7922         TCGA-HZ-7923 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-HZ-7924         TCGA-HZ-7925         TCGA-HZ-7926 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-HZ-8001         TCGA-HZ-8002         TCGA-HZ-8003 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-HZ-8005         TCGA-HZ-8315         TCGA-HZ-8317 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-HZ-8519         TCGA-HZ-8636         TCGA-HZ-8638 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-HZ-A49G         TCGA-HZ-A49H         TCGA-HZ-A4BH 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-HZ-A4BK         TCGA-IB-7644         TCGA-IB-7645 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-IB-7646         TCGA-IB-7647         TCGA-IB-7649 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-IB-7651         TCGA-IB-7652         TCGA-IB-7885 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-IB-7886         TCGA-IB-7887         TCGA-IB-7888 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-IB-7889         TCGA-IB-7890         TCGA-IB-7891 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-IB-7893         TCGA-IB-7897         TCGA-IB-8126 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-IB-8127         TCGA-IB-A5SO         TCGA-IB-A5SP 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-IB-A5SQ         TCGA-IB-A5SS         TCGA-IB-A5ST 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A545         TCGA-H6-8124 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-H6-A45N         TCGA-HZ-7289         TCGA-HZ-7918 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-HZ-7919         TCGA-HZ-7922         TCGA-HZ-7923 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-HZ-7924         TCGA-HZ-7925         TCGA-HZ-7926 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-HZ-8001         TCGA-HZ-8002         TCGA-HZ-8003 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-HZ-8005         TCGA-HZ-8315         TCGA-HZ-8317 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-HZ-8519         TCGA-HZ-8636         TCGA-HZ-8638 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-HZ-A49G         TCGA-HZ-A49H         TCGA-HZ-A4BH 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-HZ-A4BK         TCGA-IB-7644         TCGA-IB-7645 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-IB-7646         TCGA-IB-7647         TCGA-IB-7649 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-IB-7651         TCGA-IB-7652         TCGA-IB-7885 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-IB-7886         TCGA-IB-7887         TCGA-IB-7888 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-IB-7889         TCGA-IB-7890         TCGA-IB-7891 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-IB-7893         TCGA-IB-7897         TCGA-IB-8126 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-IB-8127         TCGA-IB-A5SO         TCGA-IB-A5SP 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-IB-A5SQ         TCGA-IB-A5SS         TCGA-IB-A5ST 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A545         TCGA-H6-8124 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-H6-A45N         TCGA-HZ-7289         TCGA-HZ-7918 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-HZ-7919         TCGA-HZ-7922         TCGA-HZ-7923 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-HZ-7924         TCGA-HZ-7925         TCGA-HZ-7926 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-HZ-8001         TCGA-HZ-8002         TCGA-HZ-8003 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-HZ-8005         TCGA-HZ-8315         TCGA-HZ-8317 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-HZ-8519         TCGA-HZ-8636         TCGA-HZ-8638 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-HZ-A49G         TCGA-HZ-A49H         TCGA-HZ-A4BH 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-HZ-A4BK         TCGA-IB-7644         TCGA-IB-7645 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-IB-7646         TCGA-IB-7647         TCGA-IB-7649 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-IB-7651         TCGA-IB-7652         TCGA-IB-7885 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-IB-7886         TCGA-IB-7887         TCGA-IB-7888 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-IB-7889         TCGA-IB-7890         TCGA-IB-7891 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-IB-7893         TCGA-IB-7897         TCGA-IB-8126 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-IB-8127         TCGA-IB-A5SO         TCGA-IB-A5SP 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-IB-A5SQ         TCGA-IB-A5SS         TCGA-IB-A5ST 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D27V2, continuous
                    vv
clus                 STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  19P GAIN MUTATED          0        0         0         3         0        0
  19P GAIN WILD-TYPE        2        3         7        38         2        2
D27V3, multiclass
                    vv
clus                 T1+T2 T3+T4
  19P GAIN MUTATED       0     3
  19P GAIN WILD-TYPE     6    48
D27V4, multiclass
       clus
vv      19P GAIN MUTATED 19P GAIN WILD-TYPE
  T1+T2                0                  6
  T3+T4                3                 48
D27V5, binary
                    cls
clus                  0  1
  19P GAIN MUTATED    0  3
  19P GAIN WILD-TYPE 14 40
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19P GAIN MUTATED      0    3
  19P GAIN WILD-TYPE   14   40
   clus
vv  19P GAIN MUTATED 19P GAIN WILD-TYPE
  0                0                 14
  1                3                 40
                    vv
clus                 M0 M1 MX
  19P GAIN MUTATED    3  0  0
  19P GAIN WILD-TYPE 29  2 23
D27V6, multiclass
    clus
vv   19P GAIN MUTATED 19P GAIN WILD-TYPE
  M0                3                 29
  M1                0                  2
  MX                0                 23
D27V7, binary
                    cls
clus                  0  1
  19P GAIN MUTATED    1  2
  19P GAIN WILD-TYPE 30 24
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19P GAIN MUTATED      1    2
  19P GAIN WILD-TYPE   30   24
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  FEMALE                1                 30
  MALE                  2                 24
                    vv
clus                 PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  19P GAIN MUTATED                                     3
  19P GAIN WILD-TYPE                                  48
                    vv
clus                 PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  19P GAIN MUTATED                                       0
  19P GAIN WILD-TYPE                                     4
                    vv
clus                 PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  19P GAIN MUTATED                                                  0
  19P GAIN WILD-TYPE                                                1
D27V8, multiclass
                                                  clus
vv                                                 19P GAIN MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                             3
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                0
                                                  clus
vv                                                 19P GAIN WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                              48
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                             4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                  1
D27V9, continuous
[1] "Remove cluster labels:" "19P GAIN MUTATED"      
clus
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                 2                 12 
        TCGA-F2-6880         TCGA-FB-A4P5         TCGA-H6-8124 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-H6-A45N         TCGA-IB-7644         TCGA-IB-7649 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-IB-7651         TCGA-IB-7885         TCGA-IB-7887 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-IB-7891         TCGA-IB-8126         TCGA-IB-A5SS 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
D27V10, continuous
[1] "Remove cluster labels:" "19P GAIN MUTATED"      
clus
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                 2                  9 
        TCGA-FB-A4P5         TCGA-H6-8124         TCGA-IB-7644 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-IB-7649         TCGA-IB-7651         TCGA-IB-7885 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-IB-7891         TCGA-IB-8126         TCGA-IB-A5SS 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
                    vv
clus                 R0 R1 RX
  19P GAIN MUTATED    0  2  0
  19P GAIN WILD-TYPE 32 19  2
D27V11, multiclass
[1] "Remove cluster labels:" "19P GAIN MUTATED"      
clus
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                 2                 53 
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-H6-8124         TCGA-HZ-7289 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-HZ-7918         TCGA-HZ-7919         TCGA-HZ-7920 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-HZ-7922         TCGA-HZ-7923         TCGA-HZ-7924 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-HZ-7925         TCGA-HZ-7926         TCGA-HZ-8001 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-HZ-8002         TCGA-HZ-8003         TCGA-HZ-8005 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-HZ-8315         TCGA-HZ-8317         TCGA-HZ-8519 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-HZ-8636         TCGA-HZ-8637         TCGA-HZ-8638 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-HZ-A49G         TCGA-HZ-A49H         TCGA-HZ-A49I 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-HZ-A4BH         TCGA-HZ-A4BK         TCGA-IB-7644 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-IB-7645         TCGA-IB-7646         TCGA-IB-7647 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-IB-7649         TCGA-IB-7651         TCGA-IB-7652 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-IB-7885         TCGA-IB-7887         TCGA-IB-7888 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-IB-7889         TCGA-IB-7890         TCGA-IB-7891 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-IB-7893         TCGA-IB-7897         TCGA-IB-8126 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-IB-A5SO         TCGA-IB-A5SP         TCGA-IB-A5SQ 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-IB-A5SS         TCGA-IB-A5ST 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
D27V12, continuous

Clustering(28) Variable = 19Q GAIN MUTATION ANALYSIS
D28V1, survival
                    sevent
clus2                 0  1
  19Q GAIN MUTATED    5  1
  19Q GAIN WILD-TYPE 30 18
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
                 6                 48 
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
                 1                 18 
$`19Q GAIN MUTATED`
TCGA-FB-A545 TCGA-HZ-7922 TCGA-HZ-8001 TCGA-IB-7886 TCGA-IB-7891 TCGA-IB-8127 
        0.03         0.13         0.62         4.04        16.04        17.13 

$`19Q GAIN WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.96        11.84         7.07         5.03         5.19 
TCGA-FB-A4P5 TCGA-H6-8124 TCGA-H6-A45N TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 
        0.13        12.89         7.63         7.86         0.92         0.66 
TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8002 TCGA-HZ-8003 
        0.26        12.13        12.03         0.26         0.99         0.69 
TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8636 TCGA-HZ-8638 
        3.91         0.92         0.49         0.10         0.16         2.96 
TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 
        0.76         1.02         5.98         1.51        11.41        49.38 
TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 
        4.77        21.86        15.35        19.82        15.65        27.98 
TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7893 TCGA-IB-7897 
        3.58        43.79        15.78        19.66         3.85        15.95 
TCGA-IB-8126 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST 
        0.56        10.82         9.83         7.20        15.12         0.26 

  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
              0.03               0.10 
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
             17.13              49.38 
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
             2.330              6.525 
[1] "0.0 - 17.1 (2.3)" "0.1 - 49.4 (6.5)"
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A545         TCGA-H6-8124 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-H6-A45N         TCGA-HZ-7289         TCGA-HZ-7918 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-HZ-7919         TCGA-HZ-7922         TCGA-HZ-7923 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-HZ-7924         TCGA-HZ-7925         TCGA-HZ-7926 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-HZ-8001         TCGA-HZ-8002         TCGA-HZ-8003 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-HZ-8005         TCGA-HZ-8315         TCGA-HZ-8317 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-HZ-8519         TCGA-HZ-8636         TCGA-HZ-8638 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-HZ-A49G         TCGA-HZ-A49H         TCGA-HZ-A4BH 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-HZ-A4BK         TCGA-IB-7644         TCGA-IB-7645 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-IB-7646         TCGA-IB-7647         TCGA-IB-7649 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-IB-7651         TCGA-IB-7652         TCGA-IB-7885 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-IB-7886         TCGA-IB-7887         TCGA-IB-7888 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-IB-7889         TCGA-IB-7890         TCGA-IB-7891 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-IB-7893         TCGA-IB-7897         TCGA-IB-8126 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-IB-8127         TCGA-IB-A5SO         TCGA-IB-A5SP 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-IB-A5SQ         TCGA-IB-A5SS         TCGA-IB-A5ST 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A545         TCGA-H6-8124 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-H6-A45N         TCGA-HZ-7289         TCGA-HZ-7918 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-HZ-7919         TCGA-HZ-7922         TCGA-HZ-7923 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-HZ-7924         TCGA-HZ-7925         TCGA-HZ-7926 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-HZ-8001         TCGA-HZ-8002         TCGA-HZ-8003 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-HZ-8005         TCGA-HZ-8315         TCGA-HZ-8317 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-HZ-8519         TCGA-HZ-8636         TCGA-HZ-8638 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-HZ-A49G         TCGA-HZ-A49H         TCGA-HZ-A4BH 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-HZ-A4BK         TCGA-IB-7644         TCGA-IB-7645 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-IB-7646         TCGA-IB-7647         TCGA-IB-7649 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-IB-7651         TCGA-IB-7652         TCGA-IB-7885 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-IB-7886         TCGA-IB-7887         TCGA-IB-7888 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-IB-7889         TCGA-IB-7890         TCGA-IB-7891 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-IB-7893         TCGA-IB-7897         TCGA-IB-8126 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-IB-8127         TCGA-IB-A5SO         TCGA-IB-A5SP 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-IB-A5SQ         TCGA-IB-A5SS         TCGA-IB-A5ST 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A545         TCGA-H6-8124 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-H6-A45N         TCGA-HZ-7289         TCGA-HZ-7918 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-HZ-7919         TCGA-HZ-7922         TCGA-HZ-7923 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-HZ-7924         TCGA-HZ-7925         TCGA-HZ-7926 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-HZ-8001         TCGA-HZ-8002         TCGA-HZ-8003 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-HZ-8005         TCGA-HZ-8315         TCGA-HZ-8317 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-HZ-8519         TCGA-HZ-8636         TCGA-HZ-8638 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-HZ-A49G         TCGA-HZ-A49H         TCGA-HZ-A4BH 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-HZ-A4BK         TCGA-IB-7644         TCGA-IB-7645 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-IB-7646         TCGA-IB-7647         TCGA-IB-7649 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-IB-7651         TCGA-IB-7652         TCGA-IB-7885 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-IB-7886         TCGA-IB-7887         TCGA-IB-7888 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-IB-7889         TCGA-IB-7890         TCGA-IB-7891 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-IB-7893         TCGA-IB-7897         TCGA-IB-8126 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-IB-8127         TCGA-IB-A5SO         TCGA-IB-A5SP 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-IB-A5SQ         TCGA-IB-A5SS         TCGA-IB-A5ST 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
[1] "hr=" "1.7"
D28V2, continuous
                    vv
clus                 STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  19Q GAIN MUTATED          0        0         0         5         1        0
  19Q GAIN WILD-TYPE        2        3         7        36         1        2
D28V3, multiclass
                    vv
clus                 T1+T2 T3+T4
  19Q GAIN MUTATED       0     6
  19Q GAIN WILD-TYPE     6    45
D28V4, multiclass
       clus
vv      19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  T1+T2                0                  6
  T3+T4                6                 45
D28V5, binary
                    cls
clus                  0  1
  19Q GAIN MUTATED    1  5
  19Q GAIN WILD-TYPE 13 38
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19Q GAIN MUTATED      1    5
  19Q GAIN WILD-TYPE   13   38
   clus
vv  19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  0                1                 13
  1                5                 38
                    vv
clus                 M0 M1 MX
  19Q GAIN MUTATED    4  0  2
  19Q GAIN WILD-TYPE 28  2 21
D28V6, multiclass
    clus
vv   19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  M0                4                 28
  M1                0                  2
  MX                2                 21
D28V7, binary
                    cls
clus                  0  1
  19Q GAIN MUTATED    2  4
  19Q GAIN WILD-TYPE 29 22
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19Q GAIN MUTATED      2    4
  19Q GAIN WILD-TYPE   29   22
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  FEMALE                2                 29
  MALE                  4                 22
                    vv
clus                 PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  19Q GAIN MUTATED                                     6
  19Q GAIN WILD-TYPE                                  45
                    vv
clus                 PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  19Q GAIN MUTATED                                       0
  19Q GAIN WILD-TYPE                                     4
                    vv
clus                 PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  19Q GAIN MUTATED                                                  0
  19Q GAIN WILD-TYPE                                                1
D28V8, multiclass
                                                  clus
vv                                                 19Q GAIN MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                             6
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                0
                                                  clus
vv                                                 19Q GAIN WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                              45
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                             4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                  1
D28V9, continuous
D28V10, continuous
                    vv
clus                 R0 R1 RX
  19Q GAIN MUTATED    3  2  0
  19Q GAIN WILD-TYPE 29 19  2
D28V11, multiclass
    clus
vv   19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  R0                3                 29
  R1                2                 19
  RX                0                  2
D28V12, continuous

Clustering(29) Variable = 20P GAIN MUTATION ANALYSIS
D29V1, survival
                    sevent
clus2                 0  1
  20P GAIN MUTATED    5  4
  20P GAIN WILD-TYPE 30 15
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
                 9                 45 
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
                 4                 15 
$`20P GAIN MUTATED`
TCGA-FB-A545 TCGA-HZ-7289 TCGA-HZ-7922 TCGA-HZ-8005 TCGA-IB-7646 TCGA-IB-7886 
        0.03         7.86         0.13         3.91         4.77         4.04 
TCGA-IB-7890 TCGA-IB-8127 TCGA-IB-A5SP 
       19.66        17.13         9.83 

$`20P GAIN WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.96        11.84         7.07         5.03         5.19 
TCGA-FB-A4P5 TCGA-H6-8124 TCGA-H6-A45N TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7923 
        0.13        12.89         7.63         0.92         0.66         0.26 
TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 
       12.13        12.03         0.26         0.62         0.99         0.69 
TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G 
        0.92         0.49         0.10         0.16         2.96         0.76 
TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7647 
        1.02         5.98         1.51        11.41        49.38        21.86 
TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7887 TCGA-IB-7888 
       15.35        19.82        15.65        27.98         3.58        43.79 
TCGA-IB-7889 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-A5SO 
       15.78        16.04         3.85        15.95         0.56        10.82 
TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST 
        7.20        15.12         0.26 

  20P GAIN MUTATED 20P GAIN WILD-TYPE 
              0.03               0.10 
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
             19.66              49.38 
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
              4.77               5.98 
[1] "0.0 - 19.7 (4.8)" "0.1 - 49.4 (6.0)"
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A545         TCGA-H6-8124 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-H6-A45N         TCGA-HZ-7289         TCGA-HZ-7918 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-HZ-7919         TCGA-HZ-7922         TCGA-HZ-7923 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-HZ-7924         TCGA-HZ-7925         TCGA-HZ-7926 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-HZ-8001         TCGA-HZ-8002         TCGA-HZ-8003 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-HZ-8005         TCGA-HZ-8315         TCGA-HZ-8317 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-HZ-8519         TCGA-HZ-8636         TCGA-HZ-8638 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-HZ-A49G         TCGA-HZ-A49H         TCGA-HZ-A4BH 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-HZ-A4BK         TCGA-IB-7644         TCGA-IB-7645 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-IB-7646         TCGA-IB-7647         TCGA-IB-7649 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-IB-7651         TCGA-IB-7652         TCGA-IB-7885 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-IB-7886         TCGA-IB-7887         TCGA-IB-7888 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-IB-7889         TCGA-IB-7890         TCGA-IB-7891 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-IB-7893         TCGA-IB-7897         TCGA-IB-8126 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-IB-8127         TCGA-IB-A5SO         TCGA-IB-A5SP 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-IB-A5SQ         TCGA-IB-A5SS         TCGA-IB-A5ST 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A545         TCGA-H6-8124 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-H6-A45N         TCGA-HZ-7289         TCGA-HZ-7918 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-HZ-7919         TCGA-HZ-7922         TCGA-HZ-7923 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-HZ-7924         TCGA-HZ-7925         TCGA-HZ-7926 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-HZ-8001         TCGA-HZ-8002         TCGA-HZ-8003 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-HZ-8005         TCGA-HZ-8315         TCGA-HZ-8317 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-HZ-8519         TCGA-HZ-8636         TCGA-HZ-8638 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-HZ-A49G         TCGA-HZ-A49H         TCGA-HZ-A4BH 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-HZ-A4BK         TCGA-IB-7644         TCGA-IB-7645 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-IB-7646         TCGA-IB-7647         TCGA-IB-7649 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-IB-7651         TCGA-IB-7652         TCGA-IB-7885 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-IB-7886         TCGA-IB-7887         TCGA-IB-7888 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-IB-7889         TCGA-IB-7890         TCGA-IB-7891 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-IB-7893         TCGA-IB-7897         TCGA-IB-8126 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-IB-8127         TCGA-IB-A5SO         TCGA-IB-A5SP 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-IB-A5SQ         TCGA-IB-A5SS         TCGA-IB-A5ST 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A545         TCGA-H6-8124 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-H6-A45N         TCGA-HZ-7289         TCGA-HZ-7918 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-HZ-7919         TCGA-HZ-7922         TCGA-HZ-7923 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-HZ-7924         TCGA-HZ-7925         TCGA-HZ-7926 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-HZ-8001         TCGA-HZ-8002         TCGA-HZ-8003 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-HZ-8005         TCGA-HZ-8315         TCGA-HZ-8317 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-HZ-8519         TCGA-HZ-8636         TCGA-HZ-8638 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-HZ-A49G         TCGA-HZ-A49H         TCGA-HZ-A4BH 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-HZ-A4BK         TCGA-IB-7644         TCGA-IB-7645 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-IB-7646         TCGA-IB-7647         TCGA-IB-7649 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-IB-7651         TCGA-IB-7652         TCGA-IB-7885 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-IB-7886         TCGA-IB-7887         TCGA-IB-7888 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-IB-7889         TCGA-IB-7890         TCGA-IB-7891 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-IB-7893         TCGA-IB-7897         TCGA-IB-8126 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-IB-8127         TCGA-IB-A5SO         TCGA-IB-A5SP 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-IB-A5SQ         TCGA-IB-A5SS         TCGA-IB-A5ST 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
[1] "hr=" "1.7"
D29V2, continuous
                    vv
clus                 STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  20P GAIN MUTATED          0        1         1         8         0        0
  20P GAIN WILD-TYPE        2        2         6        33         2        2
D29V3, multiclass
                    vv
clus                 T1+T2 T3+T4
  20P GAIN MUTATED       1     9
  20P GAIN WILD-TYPE     5    42
D29V4, multiclass
       clus
vv      20P GAIN MUTATED 20P GAIN WILD-TYPE
  T1+T2                1                  5
  T3+T4                9                 42
D29V5, binary
                    cls
clus                  0  1
  20P GAIN MUTATED    2  8
  20P GAIN WILD-TYPE 12 35
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20P GAIN MUTATED      2    8
  20P GAIN WILD-TYPE   12   35
   clus
vv  20P GAIN MUTATED 20P GAIN WILD-TYPE
  0                2                 12
  1                8                 35
                    vv
clus                 M0 M1 MX
  20P GAIN MUTATED    6  0  4
  20P GAIN WILD-TYPE 26  2 19
D29V6, multiclass
    clus
vv   20P GAIN MUTATED 20P GAIN WILD-TYPE
  M0                6                 26
  M1                0                  2
  MX                4                 19
D29V7, binary
                    cls
clus                  0  1
  20P GAIN MUTATED    3  7
  20P GAIN WILD-TYPE 28 19
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20P GAIN MUTATED      3    7
  20P GAIN WILD-TYPE   28   19
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  FEMALE                3                 28
  MALE                  7                 19
                    vv
clus                 PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  20P GAIN MUTATED                                     9
  20P GAIN WILD-TYPE                                  42
                    vv
clus                 PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  20P GAIN MUTATED                                       1
  20P GAIN WILD-TYPE                                     3
                    vv
clus                 PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  20P GAIN MUTATED                                                  0
  20P GAIN WILD-TYPE                                                1
D29V8, multiclass
                                                  clus
vv                                                 20P GAIN MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                             9
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                0
                                                  clus
vv                                                 20P GAIN WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                              42
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                             3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                  1
D29V9, continuous
[1] "Remove cluster labels:" "20P GAIN MUTATED"      
clus
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
                 2                 12 
        TCGA-F2-6880         TCGA-FB-A4P5         TCGA-H6-8124 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-H6-A45N         TCGA-IB-7644         TCGA-IB-7649 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-IB-7651         TCGA-IB-7885         TCGA-IB-7887 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-IB-7891         TCGA-IB-8126         TCGA-IB-A5SS 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
D29V10, continuous
[1] "Remove cluster labels:" "20P GAIN MUTATED"      
clus
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
                 2                  9 
        TCGA-FB-A4P5         TCGA-H6-8124         TCGA-IB-7644 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-IB-7649         TCGA-IB-7651         TCGA-IB-7885 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-IB-7891         TCGA-IB-8126         TCGA-IB-A5SS 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
                    vv
clus                 R0 R1 RX
  20P GAIN MUTATED    3  5  1
  20P GAIN WILD-TYPE 29 16  1
D29V11, multiclass
    clus
vv   20P GAIN MUTATED 20P GAIN WILD-TYPE
  R0                3                 29
  R1                5                 16
  RX                1                  1
D29V12, continuous

Clustering(30) Variable = 20Q GAIN MUTATION ANALYSIS
D30V1, survival
                    sevent
clus2                 0  1
  20Q GAIN MUTATED    6  4
  20Q GAIN WILD-TYPE 29 15
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
                10                 44 
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
                 4                 15 
$`20Q GAIN MUTATED`
TCGA-FB-A545 TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7922 TCGA-HZ-8005 TCGA-IB-7646 
        0.03         7.86         0.92         0.13         3.91         4.77 
TCGA-IB-7886 TCGA-IB-7890 TCGA-IB-8127 TCGA-IB-A5SP 
        4.04        19.66        17.13         9.83 

$`20Q GAIN WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.96        11.84         7.07         5.03         5.19 
TCGA-FB-A4P5 TCGA-H6-8124 TCGA-H6-A45N TCGA-HZ-7919 TCGA-HZ-7923 TCGA-HZ-7924 
        0.13        12.89         7.63         0.66         0.26        12.13 
TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8315 
       12.03         0.26         0.62         0.99         0.69         0.92 
TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H 
        0.49         0.10         0.16         2.96         0.76         1.02 
TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7647 TCGA-IB-7649 
        5.98         1.51        11.41        49.38        21.86        15.35 
TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 
       19.82        15.65        27.98         3.58        43.79        15.78 
TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-A5SO TCGA-IB-A5SQ 
       16.04         3.85        15.95         0.56        10.82         7.20 
TCGA-IB-A5SS TCGA-IB-A5ST 
       15.12         0.26 

  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
              0.03               0.10 
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
             19.66              49.38 
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
             4.405              6.525 
[1] "0.0 - 19.7 (4.4)" "0.1 - 49.4 (6.5)"
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A545         TCGA-H6-8124 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-H6-A45N         TCGA-HZ-7289         TCGA-HZ-7918 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-HZ-7919         TCGA-HZ-7922         TCGA-HZ-7923 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-HZ-7924         TCGA-HZ-7925         TCGA-HZ-7926 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-HZ-8001         TCGA-HZ-8002         TCGA-HZ-8003 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-HZ-8005         TCGA-HZ-8315         TCGA-HZ-8317 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-HZ-8519         TCGA-HZ-8636         TCGA-HZ-8638 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-HZ-A49G         TCGA-HZ-A49H         TCGA-HZ-A4BH 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-HZ-A4BK         TCGA-IB-7644         TCGA-IB-7645 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-IB-7646         TCGA-IB-7647         TCGA-IB-7649 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-IB-7651         TCGA-IB-7652         TCGA-IB-7885 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-IB-7886         TCGA-IB-7887         TCGA-IB-7888 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-IB-7889         TCGA-IB-7890         TCGA-IB-7891 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-IB-7893         TCGA-IB-7897         TCGA-IB-8126 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-IB-8127         TCGA-IB-A5SO         TCGA-IB-A5SP 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-IB-A5SQ         TCGA-IB-A5SS         TCGA-IB-A5ST 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A545         TCGA-H6-8124 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-H6-A45N         TCGA-HZ-7289         TCGA-HZ-7918 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-HZ-7919         TCGA-HZ-7922         TCGA-HZ-7923 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-HZ-7924         TCGA-HZ-7925         TCGA-HZ-7926 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-HZ-8001         TCGA-HZ-8002         TCGA-HZ-8003 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-HZ-8005         TCGA-HZ-8315         TCGA-HZ-8317 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-HZ-8519         TCGA-HZ-8636         TCGA-HZ-8638 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-HZ-A49G         TCGA-HZ-A49H         TCGA-HZ-A4BH 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-HZ-A4BK         TCGA-IB-7644         TCGA-IB-7645 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-IB-7646         TCGA-IB-7647         TCGA-IB-7649 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-IB-7651         TCGA-IB-7652         TCGA-IB-7885 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-IB-7886         TCGA-IB-7887         TCGA-IB-7888 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-IB-7889         TCGA-IB-7890         TCGA-IB-7891 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-IB-7893         TCGA-IB-7897         TCGA-IB-8126 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-IB-8127         TCGA-IB-A5SO         TCGA-IB-A5SP 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-IB-A5SQ         TCGA-IB-A5SS         TCGA-IB-A5ST 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A545         TCGA-H6-8124 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-H6-A45N         TCGA-HZ-7289         TCGA-HZ-7918 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-HZ-7919         TCGA-HZ-7922         TCGA-HZ-7923 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-HZ-7924         TCGA-HZ-7925         TCGA-HZ-7926 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-HZ-8001         TCGA-HZ-8002         TCGA-HZ-8003 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-HZ-8005         TCGA-HZ-8315         TCGA-HZ-8317 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-HZ-8519         TCGA-HZ-8636         TCGA-HZ-8638 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-HZ-A49G         TCGA-HZ-A49H         TCGA-HZ-A4BH 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-HZ-A4BK         TCGA-IB-7644         TCGA-IB-7645 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-IB-7646         TCGA-IB-7647         TCGA-IB-7649 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-IB-7651         TCGA-IB-7652         TCGA-IB-7885 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-IB-7886         TCGA-IB-7887         TCGA-IB-7888 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-IB-7889         TCGA-IB-7890         TCGA-IB-7891 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-IB-7893         TCGA-IB-7897         TCGA-IB-8126 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-IB-8127         TCGA-IB-A5SO         TCGA-IB-A5SP 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-IB-A5SQ         TCGA-IB-A5SS         TCGA-IB-A5ST 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
[1] "hr=" "1.7"
D30V2, continuous
                    vv
clus                 STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  20Q GAIN MUTATED          0        1         1         9         0        0
  20Q GAIN WILD-TYPE        2        2         6        32         2        2
D30V3, multiclass
                    vv
clus                 T1+T2 T3+T4
  20Q GAIN MUTATED       1    10
  20Q GAIN WILD-TYPE     5    41
D30V4, multiclass
       clus
vv      20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  T1+T2                1                  5
  T3+T4               10                 41
D30V5, binary
                    cls
clus                  0  1
  20Q GAIN MUTATED    2  9
  20Q GAIN WILD-TYPE 12 34
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20Q GAIN MUTATED      2    9
  20Q GAIN WILD-TYPE   12   34
   clus
vv  20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  0                2                 12
  1                9                 34
                    vv
clus                 M0 M1 MX
  20Q GAIN MUTATED    7  0  4
  20Q GAIN WILD-TYPE 25  2 19
D30V6, multiclass
    clus
vv   20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  M0                7                 25
  M1                0                  2
  MX                4                 19
D30V7, binary
                    cls
clus                  0  1
  20Q GAIN MUTATED    3  8
  20Q GAIN WILD-TYPE 28 18
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20Q GAIN MUTATED      3    8
  20Q GAIN WILD-TYPE   28   18
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  FEMALE                3                 28
  MALE                  8                 18
                    vv
clus                 PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  20Q GAIN MUTATED                                    10
  20Q GAIN WILD-TYPE                                  41
                    vv
clus                 PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  20Q GAIN MUTATED                                       1
  20Q GAIN WILD-TYPE                                     3
                    vv
clus                 PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  20Q GAIN MUTATED                                                  0
  20Q GAIN WILD-TYPE                                                1
D30V8, multiclass
                                                  clus
vv                                                 20Q GAIN MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            10
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                0
                                                  clus
vv                                                 20Q GAIN WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                              41
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                             3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                  1
D30V9, continuous
[1] "Remove cluster labels:" "20Q GAIN MUTATED"      
clus
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
                 2                 12 
        TCGA-F2-6880         TCGA-FB-A4P5         TCGA-H6-8124 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-H6-A45N         TCGA-IB-7644         TCGA-IB-7649 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-IB-7651         TCGA-IB-7885         TCGA-IB-7887 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-IB-7891         TCGA-IB-8126         TCGA-IB-A5SS 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
D30V10, continuous
[1] "Remove cluster labels:" "20Q GAIN MUTATED"      
clus
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
                 2                  9 
        TCGA-FB-A4P5         TCGA-H6-8124         TCGA-IB-7644 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-IB-7649         TCGA-IB-7651         TCGA-IB-7885 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-IB-7891         TCGA-IB-8126         TCGA-IB-A5SS 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
                    vv
clus                 R0 R1 RX
  20Q GAIN MUTATED    4  5  1
  20Q GAIN WILD-TYPE 28 16  1
D30V11, multiclass
    clus
vv   20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  R0                4                 28
  R1                5                 16
  RX                1                  1
D30V12, continuous

Clustering(31) Variable = 22Q GAIN MUTATION ANALYSIS
D31V1, survival
                    sevent
clus2                 0  1
  22Q GAIN MUTATED    2  1
  22Q GAIN WILD-TYPE 33 18
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                 3                 51 
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                 1                 18 
$`22Q GAIN MUTATED`
TCGA-FB-A545 TCGA-HZ-7922 TCGA-IB-7893 
        0.03         0.13         3.85 

$`22Q GAIN WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.96        11.84         7.07         5.03         5.19 
TCGA-FB-A4P5 TCGA-H6-8124 TCGA-H6-A45N TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 
        0.13        12.89         7.63         7.86         0.92         0.66 
TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 
        0.26        12.13        12.03         0.26         0.62         0.99 
TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8636 
        0.69         3.91         0.92         0.49         0.10         0.16 
TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 
        2.96         0.76         1.02         5.98         1.51        11.41 
TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 
       49.38         4.77        21.86        15.35        19.82        15.65 
TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 
       27.98         4.04         3.58        43.79        15.78        19.66 
TCGA-IB-7891 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP 
       16.04        15.95         0.56        17.13        10.82         9.83 
TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST 
        7.20        15.12         0.26 

  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
              0.03               0.10 
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
              3.85              49.38 
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
              0.13               7.07 
[1] "0.0 - 3.9 (0.1)"  "0.1 - 49.4 (7.1)"
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A545         TCGA-H6-8124 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-H6-A45N         TCGA-HZ-7289         TCGA-HZ-7918 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-HZ-7919         TCGA-HZ-7922         TCGA-HZ-7923 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-HZ-7924         TCGA-HZ-7925         TCGA-HZ-7926 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-HZ-8001         TCGA-HZ-8002         TCGA-HZ-8003 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-HZ-8005         TCGA-HZ-8315         TCGA-HZ-8317 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-HZ-8519         TCGA-HZ-8636         TCGA-HZ-8638 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-HZ-A49G         TCGA-HZ-A49H         TCGA-HZ-A4BH 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-HZ-A4BK         TCGA-IB-7644         TCGA-IB-7645 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-IB-7646         TCGA-IB-7647         TCGA-IB-7649 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-IB-7651         TCGA-IB-7652         TCGA-IB-7885 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-IB-7886         TCGA-IB-7887         TCGA-IB-7888 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-IB-7889         TCGA-IB-7890         TCGA-IB-7891 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-IB-7893         TCGA-IB-7897         TCGA-IB-8126 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-IB-8127         TCGA-IB-A5SO         TCGA-IB-A5SP 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-IB-A5SQ         TCGA-IB-A5SS         TCGA-IB-A5ST 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A545         TCGA-H6-8124 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-H6-A45N         TCGA-HZ-7289         TCGA-HZ-7918 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-HZ-7919         TCGA-HZ-7922         TCGA-HZ-7923 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-HZ-7924         TCGA-HZ-7925         TCGA-HZ-7926 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-HZ-8001         TCGA-HZ-8002         TCGA-HZ-8003 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-HZ-8005         TCGA-HZ-8315         TCGA-HZ-8317 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-HZ-8519         TCGA-HZ-8636         TCGA-HZ-8638 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-HZ-A49G         TCGA-HZ-A49H         TCGA-HZ-A4BH 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-HZ-A4BK         TCGA-IB-7644         TCGA-IB-7645 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-IB-7646         TCGA-IB-7647         TCGA-IB-7649 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-IB-7651         TCGA-IB-7652         TCGA-IB-7885 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-IB-7886         TCGA-IB-7887         TCGA-IB-7888 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-IB-7889         TCGA-IB-7890         TCGA-IB-7891 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-IB-7893         TCGA-IB-7897         TCGA-IB-8126 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-IB-8127         TCGA-IB-A5SO         TCGA-IB-A5SP 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-IB-A5SQ         TCGA-IB-A5SS         TCGA-IB-A5ST 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A545         TCGA-H6-8124 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-H6-A45N         TCGA-HZ-7289         TCGA-HZ-7918 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-HZ-7919         TCGA-HZ-7922         TCGA-HZ-7923 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-HZ-7924         TCGA-HZ-7925         TCGA-HZ-7926 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-HZ-8001         TCGA-HZ-8002         TCGA-HZ-8003 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-HZ-8005         TCGA-HZ-8315         TCGA-HZ-8317 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-HZ-8519         TCGA-HZ-8636         TCGA-HZ-8638 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-HZ-A49G         TCGA-HZ-A49H         TCGA-HZ-A4BH 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-HZ-A4BK         TCGA-IB-7644         TCGA-IB-7645 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-IB-7646         TCGA-IB-7647         TCGA-IB-7649 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-IB-7651         TCGA-IB-7652         TCGA-IB-7885 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-IB-7886         TCGA-IB-7887         TCGA-IB-7888 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-IB-7889         TCGA-IB-7890         TCGA-IB-7891 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-IB-7893         TCGA-IB-7897         TCGA-IB-8126 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-IB-8127         TCGA-IB-A5SO         TCGA-IB-A5SP 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-IB-A5SQ         TCGA-IB-A5SS         TCGA-IB-A5ST 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
[1] "hr=" "32" 
D31V2, continuous
                    vv
clus                 STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  22Q GAIN MUTATED          0        0         1         2         0        0
  22Q GAIN WILD-TYPE        2        3         6        39         2        2
D31V3, multiclass
                    vv
clus                 T1+T2 T3+T4
  22Q GAIN MUTATED       0     3
  22Q GAIN WILD-TYPE     6    48
D31V4, multiclass
       clus
vv      22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  T1+T2                0                  6
  T3+T4                3                 48
D31V5, binary
                    cls
clus                  0  1
  22Q GAIN MUTATED    1  2
  22Q GAIN WILD-TYPE 13 41
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  22Q GAIN MUTATED      1    2
  22Q GAIN WILD-TYPE   13   41
   clus
vv  22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  0                1                 13
  1                2                 41
                    vv
clus                 M0 M1 MX
  22Q GAIN MUTATED    2  0  1
  22Q GAIN WILD-TYPE 30  2 22
D31V6, multiclass
    clus
vv   22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  M0                2                 30
  M1                0                  2
  MX                1                 22
D31V7, binary
                    cls
clus                  0  1
  22Q GAIN MUTATED    2  1
  22Q GAIN WILD-TYPE 29 25
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  22Q GAIN MUTATED      2    1
  22Q GAIN WILD-TYPE   29   25
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  FEMALE                2                 29
  MALE                  1                 25
                    vv
clus                 PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  22Q GAIN MUTATED                                     3
  22Q GAIN WILD-TYPE                                  48
                    vv
clus                 PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  22Q GAIN MUTATED                                       0
  22Q GAIN WILD-TYPE                                     4
                    vv
clus                 PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  22Q GAIN MUTATED                                                  0
  22Q GAIN WILD-TYPE                                                1
D31V8, multiclass
                                                  clus
vv                                                 22Q GAIN MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                             3
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                0
                                                  clus
vv                                                 22Q GAIN WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                              48
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                             4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                  1
D31V9, continuous
D31V10, continuous
                    vv
clus                 R0 R1 RX
  22Q GAIN MUTATED    2  0  0
  22Q GAIN WILD-TYPE 30 21  2
D31V11, multiclass
[1] "Remove cluster labels:" "22Q GAIN MUTATED"      
clus
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                 2                 53 
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-H6-8124         TCGA-HZ-7289 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-HZ-7918         TCGA-HZ-7919         TCGA-HZ-7920 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-HZ-7923         TCGA-HZ-7924         TCGA-HZ-7925 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-HZ-7926         TCGA-HZ-8001         TCGA-HZ-8002 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-HZ-8003         TCGA-HZ-8005         TCGA-HZ-8315 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-HZ-8317         TCGA-HZ-8519         TCGA-HZ-8636 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-HZ-8637         TCGA-HZ-8638         TCGA-HZ-A49G 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-HZ-A49H         TCGA-HZ-A49I         TCGA-HZ-A4BH 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-HZ-A4BK         TCGA-IB-7644         TCGA-IB-7645 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-IB-7646         TCGA-IB-7647         TCGA-IB-7649 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-IB-7651         TCGA-IB-7652         TCGA-IB-7885 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-IB-7886         TCGA-IB-7887         TCGA-IB-7888 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-IB-7889         TCGA-IB-7890         TCGA-IB-7891 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-IB-7897         TCGA-IB-8126         TCGA-IB-8127 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-IB-A5SO         TCGA-IB-A5SP         TCGA-IB-A5SQ 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-IB-A5SS         TCGA-IB-A5ST 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
D31V12, continuous

Clustering(32) Variable = 1P LOSS MUTATION ANALYSIS
D32V1, survival
                   sevent
clus2                0  1
  1P LOSS MUTATED    2  5
  1P LOSS WILD-TYPE 33 14
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
                7                47 
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
                5                14 
$`1P LOSS MUTATED`
TCGA-HZ-8005 TCGA-IB-7651 TCGA-IB-7886 TCGA-IB-7889 TCGA-IB-8127 TCGA-IB-A5SP 
        3.91        19.82         4.04        15.78        17.13         9.83 
TCGA-IB-A5SS 
       15.12 

$`1P LOSS WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.96        11.84         7.07         5.03         5.19 
TCGA-FB-A4P5 TCGA-FB-A545 TCGA-H6-8124 TCGA-H6-A45N TCGA-HZ-7289 TCGA-HZ-7918 
        0.13         0.03        12.89         7.63         7.86         0.92 
TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 
        0.66         0.13         0.26        12.13        12.03         0.26 
TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8519 
        0.62         0.99         0.69         0.92         0.49         0.10 
TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK 
        0.16         2.96         0.76         1.02         5.98         1.51 
TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 
       11.41        49.38         4.77        21.86        15.35        15.65 
TCGA-IB-7885 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 
       27.98         3.58        43.79        19.66        16.04         3.85 
TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-A5SO TCGA-IB-A5SQ TCGA-IB-A5ST 
       15.95         0.56        10.82         7.20         0.26 

  1P LOSS MUTATED 1P LOSS WILD-TYPE 
             3.91              0.03 
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
            19.82             49.38 
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
            15.12              5.03 
[1] "3.9 - 19.8 (15.1)" "0.0 - 49.4 (5.0)" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A545 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-H6-8124        TCGA-H6-A45N        TCGA-HZ-7289        TCGA-HZ-7918 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-HZ-8519        TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-HZ-A49H        TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-IB-7645        TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-IB-7651        TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-IB-7887        TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-IB-7891        TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-IB-8127        TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-IB-A5SS        TCGA-IB-A5ST 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A545 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-H6-8124        TCGA-H6-A45N        TCGA-HZ-7289        TCGA-HZ-7918 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-HZ-8519        TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-HZ-A49H        TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-IB-7645        TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-IB-7651        TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-IB-7887        TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-IB-7891        TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-IB-8127        TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-IB-A5SS        TCGA-IB-A5ST 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A545 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-H6-8124        TCGA-H6-A45N        TCGA-HZ-7289        TCGA-HZ-7918 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-HZ-8519        TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-HZ-A49H        TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-IB-7645        TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-IB-7651        TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-IB-7887        TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-IB-7891        TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-IB-8127        TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-IB-A5SS        TCGA-IB-A5ST 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
[1] "hr=" "1.6"
D32V2, continuous
                   vv
clus                STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  1P LOSS MUTATED          0        0         1         6         0        0
  1P LOSS WILD-TYPE        2        3         6        35         2        2
D32V3, multiclass
                   vv
clus                T1+T2 T3+T4
  1P LOSS MUTATED       0     7
  1P LOSS WILD-TYPE     6    44
D32V4, multiclass
       clus
vv      1P LOSS MUTATED 1P LOSS WILD-TYPE
  T1+T2               0                 6
  T3+T4               7                44
D32V5, binary
                   cls
clus                 0  1
  1P LOSS MUTATED    1  6
  1P LOSS WILD-TYPE 13 37
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1P LOSS MUTATED      1    6
  1P LOSS WILD-TYPE   13   37
   clus
vv  1P LOSS MUTATED 1P LOSS WILD-TYPE
  0               1                13
  1               6                37
                   vv
clus                M0 M1 MX
  1P LOSS MUTATED    6  0  1
  1P LOSS WILD-TYPE 26  2 22
D32V6, multiclass
    clus
vv   1P LOSS MUTATED 1P LOSS WILD-TYPE
  M0               6                26
  M1               0                 2
  MX               1                22
D32V7, binary
                   cls
clus                 0  1
  1P LOSS MUTATED    3  4
  1P LOSS WILD-TYPE 28 22
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1P LOSS MUTATED      3    4
  1P LOSS WILD-TYPE   28   22
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  FEMALE               3                28
  MALE                 4                22
                   vv
clus                PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  1P LOSS MUTATED                                     7
  1P LOSS WILD-TYPE                                  44
                   vv
clus                PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  1P LOSS MUTATED                                       0
  1P LOSS WILD-TYPE                                     4
                   vv
clus                PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  1P LOSS MUTATED                                                  0
  1P LOSS WILD-TYPE                                                1
D32V8, multiclass
                                                  clus
vv                                                 1P LOSS MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            7
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               0
                                                  clus
vv                                                 1P LOSS WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                             44
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                            4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                 1
D32V9, continuous
D32V10, continuous
                   vv
clus                R0 R1 RX
  1P LOSS MUTATED    3  4  0
  1P LOSS WILD-TYPE 29 17  2
D32V11, multiclass
    clus
vv   1P LOSS MUTATED 1P LOSS WILD-TYPE
  R0               3                29
  R1               4                17
  RX               0                 2
D32V12, continuous

Clustering(33) Variable = 2P LOSS MUTATION ANALYSIS
D33V1, survival
                   sevent
clus2                0  1
  2P LOSS MUTATED    3  2
  2P LOSS WILD-TYPE 32 17
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
                5                49 
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
                2                17 
$`2P LOSS MUTATED`
TCGA-H6-8124 TCGA-HZ-7289 TCGA-IB-7646 TCGA-IB-7652 TCGA-IB-7888 
       12.89         7.86         4.77        15.65        43.79 

$`2P LOSS WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.96        11.84         7.07         5.03         5.19 
TCGA-FB-A4P5 TCGA-FB-A545 TCGA-H6-A45N TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 
        0.13         0.03         7.63         0.92         0.66         0.13 
TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 
        0.26        12.13        12.03         0.26         0.62         0.99 
TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8636 
        0.69         3.91         0.92         0.49         0.10         0.16 
TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 
        2.96         0.76         1.02         5.98         1.51        11.41 
TCGA-IB-7645 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7885 TCGA-IB-7886 
       49.38        21.86        15.35        19.82        27.98         4.04 
TCGA-IB-7887 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 
        3.58        15.78        19.66        16.04         3.85        15.95 
TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS 
        0.56        17.13        10.82         9.83         7.20        15.12 
TCGA-IB-A5ST 
        0.26 

  2P LOSS MUTATED 2P LOSS WILD-TYPE 
             4.77              0.03 
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
            43.79             49.38 
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
            12.89              5.03 
[1] "4.8 - 43.8 (12.9)" "0.0 - 49.4 (5.0)" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A545 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-H6-8124        TCGA-H6-A45N        TCGA-HZ-7289        TCGA-HZ-7918 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-HZ-8519        TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-HZ-A49H        TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-IB-7645        TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-IB-7651        TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-IB-7887        TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-IB-7891        TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-IB-8127        TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-IB-A5SS        TCGA-IB-A5ST 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A545 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-H6-8124        TCGA-H6-A45N        TCGA-HZ-7289        TCGA-HZ-7918 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-HZ-8519        TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-HZ-A49H        TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-IB-7645        TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-IB-7651        TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-IB-7887        TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-IB-7891        TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-IB-8127        TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-IB-A5SS        TCGA-IB-A5ST 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A545 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-H6-8124        TCGA-H6-A45N        TCGA-HZ-7289        TCGA-HZ-7918 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-HZ-8519        TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-HZ-A49H        TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-IB-7645        TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-IB-7651        TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-IB-7887        TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-IB-7891        TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-IB-8127        TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-IB-A5SS        TCGA-IB-A5ST 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
[1] "hr=" "1.8"
D33V2, continuous
                   vv
clus                STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  2P LOSS MUTATED          0        0         1         5         0        0
  2P LOSS WILD-TYPE        2        3         6        36         2        2
D33V3, multiclass
                   vv
clus                T1+T2 T3+T4
  2P LOSS MUTATED       0     6
  2P LOSS WILD-TYPE     6    45
D33V4, multiclass
       clus
vv      2P LOSS MUTATED 2P LOSS WILD-TYPE
  T1+T2               0                 6
  T3+T4               6                45
D33V5, binary
                   cls
clus                 0  1
  2P LOSS MUTATED    1  5
  2P LOSS WILD-TYPE 13 38
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2P LOSS MUTATED      1    5
  2P LOSS WILD-TYPE   13   38
   clus
vv  2P LOSS MUTATED 2P LOSS WILD-TYPE
  0               1                13
  1               5                38
                   vv
clus                M0 M1 MX
  2P LOSS MUTATED    4  0  2
  2P LOSS WILD-TYPE 28  2 21
D33V6, multiclass
    clus
vv   2P LOSS MUTATED 2P LOSS WILD-TYPE
  M0               4                28
  M1               0                 2
  MX               2                21
D33V7, binary
                   cls
clus                 0  1
  2P LOSS MUTATED    3  3
  2P LOSS WILD-TYPE 28 23
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2P LOSS MUTATED      3    3
  2P LOSS WILD-TYPE   28   23
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  FEMALE               3                28
  MALE                 3                23
                   vv
clus                PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  2P LOSS MUTATED                                     5
  2P LOSS WILD-TYPE                                  46
                   vv
clus                PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  2P LOSS MUTATED                                       1
  2P LOSS WILD-TYPE                                     3
                   vv
clus                PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  2P LOSS MUTATED                                                  0
  2P LOSS WILD-TYPE                                                1
D33V8, multiclass
                                                  clus
vv                                                 2P LOSS MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            5
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               0
                                                  clus
vv                                                 2P LOSS WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                             46
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                            3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                 1
D33V9, continuous
[1] "Remove cluster labels:" "2P LOSS MUTATED"       
clus
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
                1                13 
       TCGA-F2-6880        TCGA-FB-A4P5        TCGA-H6-A45N        TCGA-IB-7644 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-IB-7649        TCGA-IB-7651        TCGA-IB-7885        TCGA-IB-7886 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-IB-7887        TCGA-IB-7891        TCGA-IB-8126        TCGA-IB-8127 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-IB-A5SS 
"2P LOSS WILD-TYPE" 
D33V10, continuous
[1] "Remove cluster labels:" "2P LOSS MUTATED"       
clus
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
                1                10 
       TCGA-FB-A4P5        TCGA-IB-7644        TCGA-IB-7649        TCGA-IB-7651 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7891        TCGA-IB-8126 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-IB-8127        TCGA-IB-A5SS 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
                   vv
clus                R0 R1 RX
  2P LOSS MUTATED    2  3  1
  2P LOSS WILD-TYPE 30 18  1
D33V11, multiclass
    clus
vv   2P LOSS MUTATED 2P LOSS WILD-TYPE
  R0               2                30
  R1               3                18
  RX               1                 1
D33V12, continuous

Clustering(34) Variable = 3P LOSS MUTATION ANALYSIS
D34V1, survival
                   sevent
clus2                0  1
  3P LOSS MUTATED    6  5
  3P LOSS WILD-TYPE 29 14
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
               11                43 
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
                5                14 
$`3P LOSS MUTATED`
TCGA-F2-A44H TCGA-HZ-7918 TCGA-HZ-7925 TCGA-HZ-8005 TCGA-HZ-A4BK TCGA-IB-7647 
        5.19         0.92        12.03         3.91         1.51        21.86 
TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7890 TCGA-IB-8127 TCGA-IB-A5SP 
        4.04         3.58        19.66        17.13         9.83 

$`3P LOSS WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-FB-A4P5 
       10.98         9.96        11.84         7.07         5.03         0.13 
TCGA-FB-A545 TCGA-H6-8124 TCGA-H6-A45N TCGA-HZ-7289 TCGA-HZ-7919 TCGA-HZ-7922 
        0.03        12.89         7.63         7.86         0.66         0.13 
TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 
        0.26        12.13         0.26         0.62         0.99         0.69 
TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G 
        0.92         0.49         0.10         0.16         2.96         0.76 
TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7649 
        1.02         5.98        11.41        49.38         4.77        15.35 
TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7891 
       19.82        15.65        27.98        43.79        15.78        16.04 
TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-A5SO TCGA-IB-A5SQ TCGA-IB-A5SS 
        3.85        15.95         0.56        10.82         7.20        15.12 
TCGA-IB-A5ST 
        0.26 

  3P LOSS MUTATED 3P LOSS WILD-TYPE 
             0.92              0.03 
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
            21.86             49.38 
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
             5.19              5.98 
[1] "0.9 - 21.9 (5.2)" "0.0 - 49.4 (6.0)"
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A545 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-H6-8124        TCGA-H6-A45N        TCGA-HZ-7289        TCGA-HZ-7918 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-HZ-8519        TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-HZ-A49H        TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-IB-7645        TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-IB-7651        TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-IB-7887        TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-IB-7891        TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-IB-8127        TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-IB-A5SS        TCGA-IB-A5ST 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A545 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-H6-8124        TCGA-H6-A45N        TCGA-HZ-7289        TCGA-HZ-7918 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-HZ-8519        TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-HZ-A49H        TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-IB-7645        TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-IB-7651        TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-IB-7887        TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-IB-7891        TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-IB-8127        TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-IB-A5SS        TCGA-IB-A5ST 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A545 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-H6-8124        TCGA-H6-A45N        TCGA-HZ-7289        TCGA-HZ-7918 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-HZ-8519        TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-HZ-A49H        TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-IB-7645        TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-IB-7651        TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-IB-7887        TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-IB-7891        TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-IB-8127        TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-IB-A5SS        TCGA-IB-A5ST 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
[1] "hr=" "1.3"
D34V2, continuous
                   vv
clus                STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  3P LOSS MUTATED          0        1         2         8         0        0
  3P LOSS WILD-TYPE        2        2         5        33         2        2
D34V3, multiclass
                   vv
clus                T1+T2 T3+T4
  3P LOSS MUTATED       1    10
  3P LOSS WILD-TYPE     5    41
D34V4, multiclass
       clus
vv      3P LOSS MUTATED 3P LOSS WILD-TYPE
  T1+T2               1                 5
  T3+T4              10                41
D34V5, binary
                   cls
clus                 0  1
  3P LOSS MUTATED    3  8
  3P LOSS WILD-TYPE 11 35
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3P LOSS MUTATED      3    8
  3P LOSS WILD-TYPE   11   35
   clus
vv  3P LOSS MUTATED 3P LOSS WILD-TYPE
  0               3                11
  1               8                35
                   vv
clus                M0 M1 MX
  3P LOSS MUTATED    8  0  3
  3P LOSS WILD-TYPE 24  2 20
D34V6, multiclass
    clus
vv   3P LOSS MUTATED 3P LOSS WILD-TYPE
  M0               8                24
  M1               0                 2
  MX               3                20
D34V7, binary
                   cls
clus                 0  1
  3P LOSS MUTATED    2  9
  3P LOSS WILD-TYPE 29 17
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3P LOSS MUTATED      2    9
  3P LOSS WILD-TYPE   29   17
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  FEMALE               2                29
  MALE                 9                17
                   vv
clus                PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  3P LOSS MUTATED                                    10
  3P LOSS WILD-TYPE                                  41
                   vv
clus                PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  3P LOSS MUTATED                                       1
  3P LOSS WILD-TYPE                                     3
                   vv
clus                PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  3P LOSS MUTATED                                                  0
  3P LOSS WILD-TYPE                                                1
D34V8, multiclass
                                                  clus
vv                                                 3P LOSS MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           10
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               0
                                                  clus
vv                                                 3P LOSS WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                             41
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                            3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                 1
D34V9, continuous
D34V10, continuous
[1] "Remove cluster labels:" "3P LOSS MUTATED"       
clus
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
                2                 9 
       TCGA-FB-A4P5        TCGA-H6-8124        TCGA-IB-7644        TCGA-IB-7649 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-IB-7651        TCGA-IB-7885        TCGA-IB-7891        TCGA-IB-8126 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-IB-A5SS 
"3P LOSS WILD-TYPE" 
                   vv
clus                R0 R1 RX
  3P LOSS MUTATED    4  7  0
  3P LOSS WILD-TYPE 28 14  2
D34V11, multiclass
    clus
vv   3P LOSS MUTATED 3P LOSS WILD-TYPE
  R0               4                28
  R1               7                14
  RX               0                 2
D34V12, continuous

Clustering(35) Variable = 3Q LOSS MUTATION ANALYSIS
D35V1, survival
                   sevent
clus2                0  1
  3Q LOSS MUTATED    4  1
  3Q LOSS WILD-TYPE 31 18
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
                5                49 
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
                1                18 
$`3Q LOSS MUTATED`
TCGA-F2-A44H TCGA-HZ-7925 TCGA-IB-7886 TCGA-IB-8127 TCGA-IB-A5SP 
        5.19        12.03         4.04        17.13         9.83 

$`3Q LOSS WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-FB-A4P5 
       10.98         9.96        11.84         7.07         5.03         0.13 
TCGA-FB-A545 TCGA-H6-8124 TCGA-H6-A45N TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 
        0.03        12.89         7.63         7.86         0.92         0.66 
TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 
        0.13         0.26        12.13         0.26         0.62         0.99 
TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8636 
        0.69         3.91         0.92         0.49         0.10         0.16 
TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 
        2.96         0.76         1.02         5.98         1.51        11.41 
TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 
       49.38         4.77        21.86        15.35        19.82        15.65 
TCGA-IB-7885 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 
       27.98         3.58        43.79        15.78        19.66        16.04 
TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-A5SO TCGA-IB-A5SQ TCGA-IB-A5SS 
        3.85        15.95         0.56        10.82         7.20        15.12 
TCGA-IB-A5ST 
        0.26 

  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
             4.04              0.03 
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
            17.13             49.38 
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
             9.83              5.03 
[1] "4.0 - 17.1 (9.8)" "0.0 - 49.4 (5.0)"
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A545 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-H6-8124        TCGA-H6-A45N        TCGA-HZ-7289        TCGA-HZ-7918 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-HZ-8519        TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-HZ-A49H        TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-IB-7645        TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-IB-7651        TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-IB-7887        TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-IB-7891        TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-IB-8127        TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-IB-A5SS        TCGA-IB-A5ST 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A545 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-H6-8124        TCGA-H6-A45N        TCGA-HZ-7289        TCGA-HZ-7918 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-HZ-8519        TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-HZ-A49H        TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-IB-7645        TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-IB-7651        TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-IB-7887        TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-IB-7891        TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-IB-8127        TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-IB-A5SS        TCGA-IB-A5ST 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A545 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-H6-8124        TCGA-H6-A45N        TCGA-HZ-7289        TCGA-HZ-7918 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-HZ-8519        TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-HZ-A49H        TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-IB-7645        TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-IB-7651        TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-IB-7887        TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-IB-7891        TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-IB-8127        TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-IB-A5SS        TCGA-IB-A5ST 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
[1] "hr=" "1.8"
D35V2, continuous
                   vv
clus                STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  3Q LOSS MUTATED          0        0         2         3         0        0
  3Q LOSS WILD-TYPE        2        3         5        38         2        2
D35V3, multiclass
                   vv
clus                T1+T2 T3+T4
  3Q LOSS MUTATED       0     5
  3Q LOSS WILD-TYPE     6    46
D35V4, multiclass
       clus
vv      3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  T1+T2               0                 6
  T3+T4               5                46
D35V5, binary
                   cls
clus                 0  1
  3Q LOSS MUTATED    2  3
  3Q LOSS WILD-TYPE 12 40
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3Q LOSS MUTATED      2    3
  3Q LOSS WILD-TYPE   12   40
   clus
vv  3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  0               2                12
  1               3                40
                   vv
clus                M0 M1 MX
  3Q LOSS MUTATED    4  0  1
  3Q LOSS WILD-TYPE 28  2 22
D35V6, multiclass
    clus
vv   3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  M0               4                28
  M1               0                 2
  MX               1                22
D35V7, binary
                   cls
clus                 0  1
  3Q LOSS MUTATED    0  5
  3Q LOSS WILD-TYPE 31 21
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3Q LOSS MUTATED      0    5
  3Q LOSS WILD-TYPE   31   21
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  FEMALE               0                31
  MALE                 5                21
                   vv
clus                PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  3Q LOSS MUTATED                                     5
  3Q LOSS WILD-TYPE                                  46
                   vv
clus                PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  3Q LOSS MUTATED                                       0
  3Q LOSS WILD-TYPE                                     4
                   vv
clus                PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  3Q LOSS MUTATED                                                  0
  3Q LOSS WILD-TYPE                                                1
D35V8, multiclass
                                                  clus
vv                                                 3Q LOSS MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            5
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               0
                                                  clus
vv                                                 3Q LOSS WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                             46
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                            4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                 1
D35V9, continuous
[1] "Remove cluster labels:" "3Q LOSS MUTATED"       
clus
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
                2                12 
       TCGA-F2-6880        TCGA-FB-A4P5        TCGA-H6-8124        TCGA-H6-A45N 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-IB-7644        TCGA-IB-7649        TCGA-IB-7651        TCGA-IB-7885 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-IB-7887        TCGA-IB-7891        TCGA-IB-8126        TCGA-IB-A5SS 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
D35V10, continuous
[1] "Remove cluster labels:" "3Q LOSS MUTATED"       
clus
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
                2                 9 
       TCGA-FB-A4P5        TCGA-H6-8124        TCGA-IB-7644        TCGA-IB-7649 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-IB-7651        TCGA-IB-7885        TCGA-IB-7891        TCGA-IB-8126 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-IB-A5SS 
"3Q LOSS WILD-TYPE" 
                   vv
clus                R0 R1 RX
  3Q LOSS MUTATED    2  3  0
  3Q LOSS WILD-TYPE 30 18  2
D35V11, multiclass
    clus
vv   3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  R0               2                30
  R1               3                18
  RX               0                 2
D35V12, continuous

Clustering(36) Variable = 4P LOSS MUTATION ANALYSIS
D36V1, survival
                   sevent
clus2                0  1
  4P LOSS MUTATED    3  2
  4P LOSS WILD-TYPE 32 17
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
                5                49 
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
                2                17 
$`4P LOSS MUTATED`
TCGA-HZ-7918 TCGA-HZ-7925 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-A5SP 
        0.92        12.03         4.04         3.58         9.83 

$`4P LOSS WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.96        11.84         7.07         5.03         5.19 
TCGA-FB-A4P5 TCGA-FB-A545 TCGA-H6-8124 TCGA-H6-A45N TCGA-HZ-7289 TCGA-HZ-7919 
        0.13         0.03        12.89         7.63         7.86         0.66 
TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 
        0.13         0.26        12.13         0.26         0.62         0.99 
TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8636 
        0.69         3.91         0.92         0.49         0.10         0.16 
TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 
        2.96         0.76         1.02         5.98         1.51        11.41 
TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 
       49.38         4.77        21.86        15.35        19.82        15.65 
TCGA-IB-7885 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 
       27.98        43.79        15.78        19.66        16.04         3.85 
TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SQ TCGA-IB-A5SS 
       15.95         0.56        17.13        10.82         7.20        15.12 
TCGA-IB-A5ST 
        0.26 

  4P LOSS MUTATED 4P LOSS WILD-TYPE 
             0.92              0.03 
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
            12.03             49.38 
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
             4.04              5.98 
[1] "0.9 - 12.0 (4.0)" "0.0 - 49.4 (6.0)"
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A545 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-H6-8124        TCGA-H6-A45N        TCGA-HZ-7289        TCGA-HZ-7918 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-HZ-8519        TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-HZ-A49H        TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-IB-7645        TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-IB-7651        TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-IB-7887        TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-IB-7891        TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-IB-8127        TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-IB-A5SS        TCGA-IB-A5ST 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A545 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-H6-8124        TCGA-H6-A45N        TCGA-HZ-7289        TCGA-HZ-7918 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-HZ-8519        TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-HZ-A49H        TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-IB-7645        TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-IB-7651        TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-IB-7887        TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-IB-7891        TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-IB-8127        TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-IB-A5SS        TCGA-IB-A5ST 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A545 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-H6-8124        TCGA-H6-A45N        TCGA-HZ-7289        TCGA-HZ-7918 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-HZ-8519        TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-HZ-A49H        TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-IB-7645        TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-IB-7651        TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-IB-7887        TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-IB-7891        TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-IB-8127        TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-IB-A5SS        TCGA-IB-A5ST 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
[1] "hr=" "2.8"
D36V2, continuous
                   vv
clus                STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  4P LOSS MUTATED          0        0         1         5         0        0
  4P LOSS WILD-TYPE        2        3         6        36         2        2
D36V3, multiclass
                   vv
clus                T1+T2 T3+T4
  4P LOSS MUTATED       0     6
  4P LOSS WILD-TYPE     6    45
D36V4, multiclass
       clus
vv      4P LOSS MUTATED 4P LOSS WILD-TYPE
  T1+T2               0                 6
  T3+T4               6                45
D36V5, binary
                   cls
clus                 0  1
  4P LOSS MUTATED    1  5
  4P LOSS WILD-TYPE 13 38
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4P LOSS MUTATED      1    5
  4P LOSS WILD-TYPE   13   38
   clus
vv  4P LOSS MUTATED 4P LOSS WILD-TYPE
  0               1                13
  1               5                38
                   vv
clus                M0 M1 MX
  4P LOSS MUTATED    4  0  2
  4P LOSS WILD-TYPE 28  2 21
D36V6, multiclass
    clus
vv   4P LOSS MUTATED 4P LOSS WILD-TYPE
  M0               4                28
  M1               0                 2
  MX               2                21
D36V7, binary
                   cls
clus                 0  1
  4P LOSS MUTATED    1  5
  4P LOSS WILD-TYPE 30 21
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4P LOSS MUTATED      1    5
  4P LOSS WILD-TYPE   30   21
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  FEMALE               1                30
  MALE                 5                21
                   vv
clus                PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  4P LOSS MUTATED                                     6
  4P LOSS WILD-TYPE                                  45
                   vv
clus                PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  4P LOSS MUTATED                                       0
  4P LOSS WILD-TYPE                                     4
                   vv
clus                PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  4P LOSS MUTATED                                                  0
  4P LOSS WILD-TYPE                                                1
D36V8, multiclass
                                                  clus
vv                                                 4P LOSS MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            6
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               0
                                                  clus
vv                                                 4P LOSS WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                             45
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                            4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                 1
D36V9, continuous
[1] "Remove cluster labels:" "4P LOSS MUTATED"       
clus
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
                2                12 
       TCGA-F2-6880        TCGA-FB-A4P5        TCGA-H6-8124        TCGA-H6-A45N 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-IB-7644        TCGA-IB-7649        TCGA-IB-7651        TCGA-IB-7885 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-IB-7891        TCGA-IB-8126        TCGA-IB-8127        TCGA-IB-A5SS 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
D36V10, continuous
[1] "Remove cluster labels:" "4P LOSS MUTATED"       
clus
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
                1                10 
       TCGA-FB-A4P5        TCGA-H6-8124        TCGA-IB-7644        TCGA-IB-7649 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-IB-7651        TCGA-IB-7885        TCGA-IB-7891        TCGA-IB-8126 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-IB-8127        TCGA-IB-A5SS 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
                   vv
clus                R0 R1 RX
  4P LOSS MUTATED    2  4  0
  4P LOSS WILD-TYPE 30 17  2
D36V11, multiclass
    clus
vv   4P LOSS MUTATED 4P LOSS WILD-TYPE
  R0               2                30
  R1               4                17
  RX               0                 2
D36V12, continuous

Clustering(37) Variable = 4Q LOSS MUTATION ANALYSIS
D37V1, survival
                   sevent
clus2                0  1
  4Q LOSS MUTATED    3  1
  4Q LOSS WILD-TYPE 32 18
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
                4                50 
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
                1                18 
$`4Q LOSS MUTATED`
TCGA-HZ-7925 TCGA-HZ-A4BH TCGA-IB-7886 TCGA-IB-A5SP 
       12.03         5.98         4.04         9.83 

$`4Q LOSS WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.96        11.84         7.07         5.03         5.19 
TCGA-FB-A4P5 TCGA-FB-A545 TCGA-H6-8124 TCGA-H6-A45N TCGA-HZ-7289 TCGA-HZ-7918 
        0.13         0.03        12.89         7.63         7.86         0.92 
TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7926 TCGA-HZ-8001 
        0.66         0.13         0.26        12.13         0.26         0.62 
TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8519 
        0.99         0.69         3.91         0.92         0.49         0.10 
TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BK TCGA-IB-7644 
        0.16         2.96         0.76         1.02         1.51        11.41 
TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 
       49.38         4.77        21.86        15.35        19.82        15.65 
TCGA-IB-7885 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 
       27.98         3.58        43.79        15.78        19.66        16.04 
TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SQ 
        3.85        15.95         0.56        17.13        10.82         7.20 
TCGA-IB-A5SS TCGA-IB-A5ST 
       15.12         0.26 

  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
             4.04              0.03 
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
            12.03             49.38 
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
            7.905             5.110 
[1] "4.0 - 12.0 (7.9)" "0.0 - 49.4 (5.1)"
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A545 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-H6-8124        TCGA-H6-A45N        TCGA-HZ-7289        TCGA-HZ-7918 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-HZ-8519        TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-HZ-A49H        TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-IB-7645        TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-IB-7651        TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-IB-7887        TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-IB-7891        TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-IB-8127        TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-IB-A5SS        TCGA-IB-A5ST 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A545 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-H6-8124        TCGA-H6-A45N        TCGA-HZ-7289        TCGA-HZ-7918 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-HZ-8519        TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-HZ-A49H        TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-IB-7645        TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-IB-7651        TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-IB-7887        TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-IB-7891        TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-IB-8127        TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-IB-A5SS        TCGA-IB-A5ST 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A545 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-H6-8124        TCGA-H6-A45N        TCGA-HZ-7289        TCGA-HZ-7918 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-HZ-8519        TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-HZ-A49H        TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-IB-7645        TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-IB-7651        TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-IB-7887        TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-IB-7891        TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-IB-8127        TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-IB-A5SS        TCGA-IB-A5ST 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D37V2, continuous
                   vv
clus                STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  4Q LOSS MUTATED          0        0         1         4         0        0
  4Q LOSS WILD-TYPE        2        3         6        37         2        2
D37V3, multiclass
                   vv
clus                T1+T2 T3+T4
  4Q LOSS MUTATED       0     5
  4Q LOSS WILD-TYPE     6    46
D37V4, multiclass
       clus
vv      4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  T1+T2               0                 6
  T3+T4               5                46
D37V5, binary
                   cls
clus                 0  1
  4Q LOSS MUTATED    1  4
  4Q LOSS WILD-TYPE 13 39
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4Q LOSS MUTATED      1    4
  4Q LOSS WILD-TYPE   13   39
   clus
vv  4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  0               1                13
  1               4                39
                   vv
clus                M0 M1 MX
  4Q LOSS MUTATED    2  0  3
  4Q LOSS WILD-TYPE 30  2 20
D37V6, multiclass
    clus
vv   4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  M0               2                30
  M1               0                 2
  MX               3                20
D37V7, binary
                   cls
clus                 0  1
  4Q LOSS MUTATED    0  5
  4Q LOSS WILD-TYPE 31 21
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4Q LOSS MUTATED      0    5
  4Q LOSS WILD-TYPE   31   21
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  FEMALE               0                31
  MALE                 5                21
                   vv
clus                PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  4Q LOSS MUTATED                                     5
  4Q LOSS WILD-TYPE                                  46
                   vv
clus                PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  4Q LOSS MUTATED                                       0
  4Q LOSS WILD-TYPE                                     4
                   vv
clus                PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  4Q LOSS MUTATED                                                  0
  4Q LOSS WILD-TYPE                                                1
D37V8, multiclass
                                                  clus
vv                                                 4Q LOSS MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            5
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               0
                                                  clus
vv                                                 4Q LOSS WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                             46
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                            4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                 1
D37V9, continuous
[1] "Remove cluster labels:" "4Q LOSS MUTATED"       
clus
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
                1                13 
       TCGA-F2-6880        TCGA-FB-A4P5        TCGA-H6-8124        TCGA-H6-A45N 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-IB-7644        TCGA-IB-7649        TCGA-IB-7651        TCGA-IB-7885 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-IB-7887        TCGA-IB-7891        TCGA-IB-8126        TCGA-IB-8127 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-IB-A5SS 
"4Q LOSS WILD-TYPE" 
D37V10, continuous
[1] "Remove cluster labels:" "4Q LOSS MUTATED"       
clus
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
                1                10 
       TCGA-FB-A4P5        TCGA-H6-8124        TCGA-IB-7644        TCGA-IB-7649 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-IB-7651        TCGA-IB-7885        TCGA-IB-7891        TCGA-IB-8126 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-IB-8127        TCGA-IB-A5SS 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
                   vv
clus                R0 R1 RX
  4Q LOSS MUTATED    1  4  0
  4Q LOSS WILD-TYPE 31 17  2
D37V11, multiclass
    clus
vv   4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  R0               1                31
  R1               4                17
  RX               0                 2
D37V12, continuous

Clustering(38) Variable = 5Q LOSS MUTATION ANALYSIS
D38V1, survival
                   sevent
clus2                0  1
  5Q LOSS MUTATED    4  1
  5Q LOSS WILD-TYPE 31 18
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
                5                49 
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
                1                18 
$`5Q LOSS MUTATED`
TCGA-FB-A545 TCGA-HZ-7289 TCGA-HZ-7922 TCGA-HZ-8005 TCGA-IB-8127 
        0.03         7.86         0.13         3.91        17.13 

$`5Q LOSS WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.96        11.84         7.07         5.03         5.19 
TCGA-FB-A4P5 TCGA-H6-8124 TCGA-H6-A45N TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7923 
        0.13        12.89         7.63         0.92         0.66         0.26 
TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 
       12.13        12.03         0.26         0.62         0.99         0.69 
TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G 
        0.92         0.49         0.10         0.16         2.96         0.76 
TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 
        1.02         5.98         1.51        11.41        49.38         4.77 
TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 
       21.86        15.35        19.82        15.65        27.98         4.04 
TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 
        3.58        43.79        15.78        19.66        16.04         3.85 
TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS 
       15.95         0.56        10.82         9.83         7.20        15.12 
TCGA-IB-A5ST 
        0.26 

  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
             0.03              0.10 
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
            17.13             49.38 
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
             3.91              5.98 
[1] "0.0 - 17.1 (3.9)" "0.1 - 49.4 (6.0)"
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A545 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-H6-8124        TCGA-H6-A45N        TCGA-HZ-7289        TCGA-HZ-7918 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-HZ-8519        TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-HZ-A49H        TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-IB-7645        TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-IB-7651        TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-IB-7887        TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-IB-7891        TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-IB-8127        TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-IB-A5SS        TCGA-IB-A5ST 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A545 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-H6-8124        TCGA-H6-A45N        TCGA-HZ-7289        TCGA-HZ-7918 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-HZ-8519        TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-HZ-A49H        TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-IB-7645        TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-IB-7651        TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-IB-7887        TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-IB-7891        TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-IB-8127        TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-IB-A5SS        TCGA-IB-A5ST 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A545 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-H6-8124        TCGA-H6-A45N        TCGA-HZ-7289        TCGA-HZ-7918 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-HZ-8519        TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-HZ-A49H        TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-IB-7645        TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-IB-7651        TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-IB-7887        TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-IB-7891        TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-IB-8127        TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-IB-A5SS        TCGA-IB-A5ST 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D38V2, continuous
                   vv
clus                STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  5Q LOSS MUTATED          0        0         0         5         0        0
  5Q LOSS WILD-TYPE        2        3         7        36         2        2
D38V3, multiclass
                   vv
clus                T1+T2 T3+T4
  5Q LOSS MUTATED       0     5
  5Q LOSS WILD-TYPE     6    46
D38V4, multiclass
       clus
vv      5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  T1+T2               0                 6
  T3+T4               5                46
D38V5, binary
                   cls
clus                 0  1
  5Q LOSS MUTATED    0  5
  5Q LOSS WILD-TYPE 14 38
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5Q LOSS MUTATED      0    5
  5Q LOSS WILD-TYPE   14   38
   clus
vv  5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  0               0                14
  1               5                38
                   vv
clus                M0 M1 MX
  5Q LOSS MUTATED    2  0  3
  5Q LOSS WILD-TYPE 30  2 20
D38V6, multiclass
    clus
vv   5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  M0               2                30
  M1               0                 2
  MX               3                20
D38V7, binary
                   cls
clus                 0  1
  5Q LOSS MUTATED    2  3
  5Q LOSS WILD-TYPE 29 23
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5Q LOSS MUTATED      2    3
  5Q LOSS WILD-TYPE   29   23
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  FEMALE               2                29
  MALE                 3                23
                   vv
clus                PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  5Q LOSS MUTATED                                     4
  5Q LOSS WILD-TYPE                                  47
                   vv
clus                PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  5Q LOSS MUTATED                                       1
  5Q LOSS WILD-TYPE                                     3
                   vv
clus                PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  5Q LOSS MUTATED                                                  0
  5Q LOSS WILD-TYPE                                                1
D38V8, multiclass
                                                  clus
vv                                                 5Q LOSS MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            4
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               0
                                                  clus
vv                                                 5Q LOSS WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                             47
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                            3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                 1
D38V9, continuous
[1] "Remove cluster labels:" "5Q LOSS MUTATED"       
clus
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
                1                13 
       TCGA-F2-6880        TCGA-FB-A4P5        TCGA-H6-8124        TCGA-H6-A45N 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-IB-7644        TCGA-IB-7649        TCGA-IB-7651        TCGA-IB-7885 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-IB-7886        TCGA-IB-7887        TCGA-IB-7891        TCGA-IB-8126 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-IB-A5SS 
"5Q LOSS WILD-TYPE" 
D38V10, continuous
[1] "Remove cluster labels:" "5Q LOSS MUTATED"       
clus
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
                1                10 
       TCGA-FB-A4P5        TCGA-H6-8124        TCGA-IB-7644        TCGA-IB-7649 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-IB-7651        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7891 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-IB-8126        TCGA-IB-A5SS 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
                   vv
clus                R0 R1 RX
  5Q LOSS MUTATED    1  2  1
  5Q LOSS WILD-TYPE 31 19  1
D38V11, multiclass
    clus
vv   5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  R0               1                31
  R1               2                19
  RX               1                 1
D38V12, continuous

Clustering(39) Variable = 6P LOSS MUTATION ANALYSIS
D39V1, survival
                   sevent
clus2                0  1
  6P LOSS MUTATED   11  9
  6P LOSS WILD-TYPE 24 10
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
               20                34 
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
                9                10 
$`6P LOSS MUTATED`
TCGA-F2-6879 TCGA-F2-A44H TCGA-FB-A545 TCGA-H6-8124 TCGA-HZ-7289 TCGA-HZ-7919 
       10.98         5.19         0.03        12.89         7.86         0.66 
TCGA-HZ-7925 TCGA-HZ-8001 TCGA-HZ-8315 TCGA-HZ-A4BK TCGA-IB-7646 TCGA-IB-7647 
       12.03         0.62         0.92         1.51         4.77        21.86 
TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7893 TCGA-IB-8127 
        4.04         3.58        15.78        19.66         3.85        17.13 
TCGA-IB-A5SP TCGA-IB-A5SS 
        9.83        15.12 

$`6P LOSS WILD-TYPE`
TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-FB-A4P5 TCGA-H6-A45N 
        9.96        11.84         7.07         5.03         0.13         7.63 
TCGA-HZ-7918 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7926 TCGA-HZ-8002 
        0.92         0.13         0.26        12.13         0.26         0.99 
TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8636 TCGA-HZ-8638 
        0.69         3.91         0.49         0.10         0.16         2.96 
TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7649 
        0.76         1.02         5.98        11.41        49.38        15.35 
TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7888 TCGA-IB-7891 TCGA-IB-7897 
       19.82        15.65        27.98        43.79        16.04        15.95 
TCGA-IB-8126 TCGA-IB-A5SO TCGA-IB-A5SQ TCGA-IB-A5ST 
        0.56        10.82         7.20         0.26 

  6P LOSS MUTATED 6P LOSS WILD-TYPE 
             0.03              0.10 
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
            21.86             49.38 
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
            6.525             5.505 
[1] "0.0 - 21.9 (6.5)" "0.1 - 49.4 (5.5)"
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A545 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-H6-8124        TCGA-H6-A45N        TCGA-HZ-7289        TCGA-HZ-7918 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-HZ-8519        TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-HZ-A49H        TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-IB-7645        TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-IB-7651        TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-IB-7887        TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" 
       TCGA-IB-7891        TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-IB-8127        TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-IB-A5SS        TCGA-IB-A5ST 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A545 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-H6-8124        TCGA-H6-A45N        TCGA-HZ-7289        TCGA-HZ-7918 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-HZ-8519        TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-HZ-A49H        TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-IB-7645        TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-IB-7651        TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-IB-7887        TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" 
       TCGA-IB-7891        TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-IB-8127        TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-IB-A5SS        TCGA-IB-A5ST 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A545 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-H6-8124        TCGA-H6-A45N        TCGA-HZ-7289        TCGA-HZ-7918 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-HZ-8519        TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-HZ-A49H        TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-IB-7645        TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-IB-7651        TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-IB-7887        TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" 
       TCGA-IB-7891        TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-IB-8127        TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-IB-A5SS        TCGA-IB-A5ST 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
[1] "hr=" "1.9"
D39V2, continuous
                   vv
clus                STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  6P LOSS MUTATED          0        1         4        14         1        0
  6P LOSS WILD-TYPE        2        2         3        27         1        2
D39V3, multiclass
                   vv
clus                T1+T2 T3+T4
  6P LOSS MUTATED       1    19
  6P LOSS WILD-TYPE     5    32
D39V4, multiclass
       clus
vv      6P LOSS MUTATED 6P LOSS WILD-TYPE
  T1+T2               1                 5
  T3+T4              19                32
D39V5, binary
                   cls
clus                 0  1
  6P LOSS MUTATED    6 14
  6P LOSS WILD-TYPE  8 29
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6P LOSS MUTATED      6   14
  6P LOSS WILD-TYPE    8   29
   clus
vv  6P LOSS MUTATED 6P LOSS WILD-TYPE
  0               6                 8
  1              14                29
                   vv
clus                M0 M1 MX
  6P LOSS MUTATED   15  0  5
  6P LOSS WILD-TYPE 17  2 18
D39V6, multiclass
    clus
vv   6P LOSS MUTATED 6P LOSS WILD-TYPE
  M0              15                17
  M1               0                 2
  MX               5                18
D39V7, binary
                   cls
clus                 0  1
  6P LOSS MUTATED    8 12
  6P LOSS WILD-TYPE 23 14
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6P LOSS MUTATED      8   12
  6P LOSS WILD-TYPE   23   14
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  FEMALE               8                23
  MALE                12                14
                   vv
clus                PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  6P LOSS MUTATED                                    17
  6P LOSS WILD-TYPE                                  34
                   vv
clus                PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  6P LOSS MUTATED                                       2
  6P LOSS WILD-TYPE                                     2
                   vv
clus                PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  6P LOSS MUTATED                                                  0
  6P LOSS WILD-TYPE                                                1
D39V8, multiclass
                                                  clus
vv                                                 6P LOSS MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           17
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          2
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               0
                                                  clus
vv                                                 6P LOSS WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                             34
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                            2
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                 1
D39V9, continuous
D39V10, continuous
                   vv
clus                R0 R1 RX
  6P LOSS MUTATED    9  9  1
  6P LOSS WILD-TYPE 23 12  1
D39V11, multiclass
    clus
vv   6P LOSS MUTATED 6P LOSS WILD-TYPE
  R0               9                23
  R1               9                12
  RX               1                 1
D39V12, continuous

Clustering(40) Variable = 6Q LOSS MUTATION ANALYSIS
D40V1, survival
                   sevent
clus2                0  1
  6Q LOSS MUTATED   14  9
  6Q LOSS WILD-TYPE 21 10
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
               23                31 
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
                9                10 
$`6Q LOSS MUTATED`
TCGA-F2-6879 TCGA-F2-A44H TCGA-FB-A545 TCGA-H6-8124 TCGA-HZ-7289 TCGA-HZ-7919 
       10.98         5.19         0.03        12.89         7.86         0.66 
TCGA-HZ-7922 TCGA-HZ-7925 TCGA-HZ-8001 TCGA-HZ-8315 TCGA-HZ-8636 TCGA-IB-7644 
        0.13        12.03         0.62         0.92         0.16        11.41 
TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7889 
        4.77        21.86        27.98         4.04         3.58        15.78 
TCGA-IB-7890 TCGA-IB-7893 TCGA-IB-8127 TCGA-IB-A5SP TCGA-IB-A5SS 
       19.66         3.85        17.13         9.83        15.12 

$`6Q LOSS WILD-TYPE`
TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-FB-A4P5 TCGA-H6-A45N 
        9.96        11.84         7.07         5.03         0.13         7.63 
TCGA-HZ-7918 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7926 TCGA-HZ-8002 TCGA-HZ-8003 
        0.92         0.26        12.13         0.26         0.99         0.69 
TCGA-HZ-8005 TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H 
        3.91         0.49         0.10         2.96         0.76         1.02 
TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7645 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 
        5.98         1.51        49.38        15.35        19.82        15.65 
TCGA-IB-7888 TCGA-IB-7891 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-A5SO TCGA-IB-A5SQ 
       43.79        16.04        15.95         0.56        10.82         7.20 
TCGA-IB-A5ST 
        0.26 

  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
             0.03              0.10 
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
            27.98             49.38 
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
             7.86              5.03 
[1] "0.0 - 28.0 (7.9)" "0.1 - 49.4 (5.0)"
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A545 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-H6-8124        TCGA-H6-A45N        TCGA-HZ-7289        TCGA-HZ-7918 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-HZ-8519        TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-HZ-A49H        TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-IB-7645        TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-IB-7651        TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-IB-7887        TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-IB-7891        TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-IB-8127        TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-IB-A5SS        TCGA-IB-A5ST 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A545 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-H6-8124        TCGA-H6-A45N        TCGA-HZ-7289        TCGA-HZ-7918 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-HZ-8519        TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-HZ-A49H        TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-IB-7645        TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-IB-7651        TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-IB-7887        TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-IB-7891        TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-IB-8127        TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-IB-A5SS        TCGA-IB-A5ST 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A545 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-H6-8124        TCGA-H6-A45N        TCGA-HZ-7289        TCGA-HZ-7918 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-HZ-8519        TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-HZ-A49H        TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-IB-7645        TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-IB-7651        TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-IB-7887        TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-IB-7891        TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-IB-8127        TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-IB-A5SS        TCGA-IB-A5ST 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D40V2, continuous
                   vv
clus                STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  6Q LOSS MUTATED          0        1         4        15         1        2
  6Q LOSS WILD-TYPE        2        2         3        26         1        0
D40V3, multiclass
                   vv
clus                T1+T2 T3+T4
  6Q LOSS MUTATED       1    22
  6Q LOSS WILD-TYPE     5    29
D40V4, multiclass
       clus
vv      6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  T1+T2               1                 5
  T3+T4              22                29
D40V5, binary
                   cls
clus                 0  1
  6Q LOSS MUTATED    7 16
  6Q LOSS WILD-TYPE  7 27
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6Q LOSS MUTATED      7   16
  6Q LOSS WILD-TYPE    7   27
   clus
vv  6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  0               7                 7
  1              16                27
                   vv
clus                M0 M1 MX
  6Q LOSS MUTATED   16  2  5
  6Q LOSS WILD-TYPE 16  0 18
D40V6, multiclass
    clus
vv   6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  M0              16                16
  M1               2                 0
  MX               5                18
D40V7, binary
                   cls
clus                 0  1
  6Q LOSS MUTATED   12 11
  6Q LOSS WILD-TYPE 19 15
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6Q LOSS MUTATED     12   11
  6Q LOSS WILD-TYPE   19   15
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  FEMALE              12                19
  MALE                11                15
                   vv
clus                PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  6Q LOSS MUTATED                                    21
  6Q LOSS WILD-TYPE                                  30
                   vv
clus                PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  6Q LOSS MUTATED                                       1
  6Q LOSS WILD-TYPE                                     3
                   vv
clus                PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  6Q LOSS MUTATED                                                  0
  6Q LOSS WILD-TYPE                                                1
D40V8, multiclass
                                                  clus
vv                                                 6Q LOSS MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           21
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               0
                                                  clus
vv                                                 6Q LOSS WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                             30
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                            3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                 1
D40V9, continuous
D40V10, continuous
                   vv
clus                R0 R1 RX
  6Q LOSS MUTATED   11 10  1
  6Q LOSS WILD-TYPE 21 11  1
D40V11, multiclass
    clus
vv   6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  R0              11                21
  R1              10                11
  RX               1                 1
D40V12, continuous

Clustering(41) Variable = 8P LOSS MUTATION ANALYSIS
D41V1, survival
                   sevent
clus2                0  1
  8P LOSS MUTATED    4  4
  8P LOSS WILD-TYPE 31 15
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
                8                46 
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
                4                15 
$`8P LOSS MUTATED`
TCGA-F2-6879 TCGA-HZ-7289 TCGA-HZ-7919 TCGA-HZ-7925 TCGA-HZ-8005 TCGA-HZ-8636 
       10.98         7.86         0.66        12.03         3.91         0.16 
TCGA-IB-7647 TCGA-IB-7890 
       21.86        19.66 

$`8P LOSS WILD-TYPE`
TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A4P5 
        9.96        11.84         7.07         5.03         5.19         0.13 
TCGA-FB-A545 TCGA-H6-8124 TCGA-H6-A45N TCGA-HZ-7918 TCGA-HZ-7922 TCGA-HZ-7923 
        0.03        12.89         7.63         0.92         0.13         0.26 
TCGA-HZ-7924 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8315 
       12.13         0.26         0.62         0.99         0.69         0.92 
TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH 
        0.49         0.10         2.96         0.76         1.02         5.98 
TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7649 TCGA-IB-7651 
        1.51        11.41        49.38         4.77        15.35        19.82 
TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 
       15.65        27.98         4.04         3.58        43.79        15.78 
TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO 
       16.04         3.85        15.95         0.56        17.13        10.82 
TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST 
        9.83         7.20        15.12         0.26 

  8P LOSS MUTATED 8P LOSS WILD-TYPE 
             0.16              0.03 
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
            21.86             49.38 
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
             9.42              5.11 
[1] "0.2 - 21.9 (9.4)" "0.0 - 49.4 (5.1)"
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A545 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-H6-8124        TCGA-H6-A45N        TCGA-HZ-7289        TCGA-HZ-7918 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-HZ-8519        TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-HZ-A49H        TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-IB-7645        TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-IB-7651        TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-IB-7887        TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-IB-7891        TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-IB-8127        TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-IB-A5SS        TCGA-IB-A5ST 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A545 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-H6-8124        TCGA-H6-A45N        TCGA-HZ-7289        TCGA-HZ-7918 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-HZ-8519        TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-HZ-A49H        TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-IB-7645        TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-IB-7651        TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-IB-7887        TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-IB-7891        TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-IB-8127        TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-IB-A5SS        TCGA-IB-A5ST 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A545 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-H6-8124        TCGA-H6-A45N        TCGA-HZ-7289        TCGA-HZ-7918 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-HZ-8519        TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-HZ-A49H        TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-IB-7645        TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-IB-7651        TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-IB-7887        TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-IB-7891        TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-IB-8127        TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-IB-A5SS        TCGA-IB-A5ST 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D41V2, continuous
                   vv
clus                STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  8P LOSS MUTATED          0        1         0         6         0        1
  8P LOSS WILD-TYPE        2        2         7        35         2        1
D41V3, multiclass
                   vv
clus                T1+T2 T3+T4
  8P LOSS MUTATED       1     7
  8P LOSS WILD-TYPE     5    44
D41V4, multiclass
       clus
vv      8P LOSS MUTATED 8P LOSS WILD-TYPE
  T1+T2               1                 5
  T3+T4               7                44
D41V5, binary
                   cls
clus                 0  1
  8P LOSS MUTATED    2  6
  8P LOSS WILD-TYPE 12 37
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8P LOSS MUTATED      2    6
  8P LOSS WILD-TYPE   12   37
   clus
vv  8P LOSS MUTATED 8P LOSS WILD-TYPE
  0               2                12
  1               6                37
                   vv
clus                M0 M1 MX
  8P LOSS MUTATED    4  1  3
  8P LOSS WILD-TYPE 28  1 20
D41V6, multiclass
    clus
vv   8P LOSS MUTATED 8P LOSS WILD-TYPE
  M0               4                28
  M1               1                 1
  MX               3                20
D41V7, binary
                   cls
clus                 0  1
  8P LOSS MUTATED    3  5
  8P LOSS WILD-TYPE 28 21
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8P LOSS MUTATED      3    5
  8P LOSS WILD-TYPE   28   21
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  FEMALE               3                28
  MALE                 5                21
                   vv
clus                PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  8P LOSS MUTATED                                     6
  8P LOSS WILD-TYPE                                  45
                   vv
clus                PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  8P LOSS MUTATED                                       1
  8P LOSS WILD-TYPE                                     3
                   vv
clus                PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  8P LOSS MUTATED                                                  0
  8P LOSS WILD-TYPE                                                1
D41V8, multiclass
                                                  clus
vv                                                 8P LOSS MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            6
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               0
                                                  clus
vv                                                 8P LOSS WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                             45
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                            3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                 1
D41V9, continuous
D41V10, continuous
                   vv
clus                R0 R1 RX
  8P LOSS MUTATED    3  4  1
  8P LOSS WILD-TYPE 29 17  1
D41V11, multiclass
    clus
vv   8P LOSS MUTATED 8P LOSS WILD-TYPE
  R0               3                29
  R1               4                17
  RX               1                 1
D41V12, continuous

Clustering(42) Variable = 9P LOSS MUTATION ANALYSIS
D42V1, survival
                   sevent
clus2                0  1
  9P LOSS MUTATED   14  7
  9P LOSS WILD-TYPE 21 12
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
               21                33 
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
                7                12 
$`9P LOSS MUTATED`
TCGA-F2-6879 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A545 TCGA-H6-8124 TCGA-HZ-7289 
       10.98         5.03         5.19         0.03        12.89         7.86 
TCGA-HZ-7918 TCGA-HZ-7922 TCGA-HZ-7925 TCGA-HZ-8005 TCGA-HZ-A49G TCGA-HZ-A4BH 
        0.92         0.13        12.03         3.91         0.76         5.98 
TCGA-IB-7645 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 
       49.38        21.86        15.35        15.65        27.98         4.04 
TCGA-IB-7887 TCGA-IB-8127 TCGA-IB-A5SP 
        3.58        17.13         9.83 

$`9P LOSS WILD-TYPE`
TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-FB-A4P5 TCGA-H6-A45N TCGA-HZ-7919 
        9.96        11.84         7.07         0.13         7.63         0.66 
TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 
        0.26        12.13         0.26         0.62         0.99         0.69 
TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49H 
        0.92         0.49         0.10         0.16         2.96         1.02 
TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7646 TCGA-IB-7651 TCGA-IB-7888 TCGA-IB-7889 
        1.51        11.41         4.77        19.82        43.79        15.78 
TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-A5SO 
       19.66        16.04         3.85        15.95         0.56        10.82 
TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST 
        7.20        15.12         0.26 

  9P LOSS MUTATED 9P LOSS WILD-TYPE 
             0.03              0.10 
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
            49.38             43.79 
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
             7.86              3.85 
[1] "0.0 - 49.4 (7.9)" "0.1 - 43.8 (3.9)"
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A545 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-H6-8124        TCGA-H6-A45N        TCGA-HZ-7289        TCGA-HZ-7918 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-HZ-8519        TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-HZ-A49H        TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-IB-7645        TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-IB-7651        TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-IB-7887        TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-IB-7891        TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-IB-8127        TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-IB-A5SS        TCGA-IB-A5ST 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A545 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-H6-8124        TCGA-H6-A45N        TCGA-HZ-7289        TCGA-HZ-7918 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-HZ-8519        TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-HZ-A49H        TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-IB-7645        TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-IB-7651        TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-IB-7887        TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-IB-7891        TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-IB-8127        TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-IB-A5SS        TCGA-IB-A5ST 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A545 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-H6-8124        TCGA-H6-A45N        TCGA-HZ-7289        TCGA-HZ-7918 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-HZ-8519        TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-HZ-A49H        TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-IB-7645        TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-IB-7651        TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-IB-7887        TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-IB-7891        TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-IB-8127        TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-IB-A5SS        TCGA-IB-A5ST 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
[1] "hr=" "2"  
D42V2, continuous
                   vv
clus                STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  9P LOSS MUTATED          0        0         2        20         0        0
  9P LOSS WILD-TYPE        2        3         5        21         2        2
D42V3, multiclass
                   vv
clus                T1+T2 T3+T4
  9P LOSS MUTATED       1    21
  9P LOSS WILD-TYPE     5    30
D42V4, multiclass
       clus
vv      9P LOSS MUTATED 9P LOSS WILD-TYPE
  T1+T2               1                 5
  T3+T4              21                30
D42V5, binary
                   cls
clus                 0  1
  9P LOSS MUTATED    2 20
  9P LOSS WILD-TYPE 12 23
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9P LOSS MUTATED      2   20
  9P LOSS WILD-TYPE   12   23
   clus
vv  9P LOSS MUTATED 9P LOSS WILD-TYPE
  0               2                12
  1              20                23
                   vv
clus                M0 M1 MX
  9P LOSS MUTATED   15  0  7
  9P LOSS WILD-TYPE 17  2 16
D42V6, multiclass
    clus
vv   9P LOSS MUTATED 9P LOSS WILD-TYPE
  M0              15                17
  M1               0                 2
  MX               7                16
D42V7, binary
                   cls
clus                 0  1
  9P LOSS MUTATED   12 10
  9P LOSS WILD-TYPE 19 16
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9P LOSS MUTATED     12   10
  9P LOSS WILD-TYPE   19   16
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  FEMALE              12                19
  MALE                10                16
                   vv
clus                PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  9P LOSS MUTATED                                    20
  9P LOSS WILD-TYPE                                  31
                   vv
clus                PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  9P LOSS MUTATED                                       1
  9P LOSS WILD-TYPE                                     3
                   vv
clus                PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  9P LOSS MUTATED                                                  0
  9P LOSS WILD-TYPE                                                1
D42V8, multiclass
                                                  clus
vv                                                 9P LOSS MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           20
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               0
                                                  clus
vv                                                 9P LOSS WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                             31
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                            3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                 1
D42V9, continuous
D42V10, continuous
                   vv
clus                R0 R1 RX
  9P LOSS MUTATED    9 11  1
  9P LOSS WILD-TYPE 23 10  1
D42V11, multiclass
    clus
vv   9P LOSS MUTATED 9P LOSS WILD-TYPE
  R0               9                23
  R1              11                10
  RX               1                 1
D42V12, continuous

Clustering(43) Variable = 9Q LOSS MUTATION ANALYSIS
D43V1, survival
                   sevent
clus2                0  1
  9Q LOSS MUTATED    8  3
  9Q LOSS WILD-TYPE 27 16
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
               11                43 
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
                3                16 
$`9Q LOSS MUTATED`
TCGA-F2-A44G TCGA-F2-A44H TCGA-H6-8124 TCGA-HZ-7918 TCGA-HZ-7922 TCGA-HZ-8005 
        5.03         5.19        12.89         0.92         0.13         3.91 
TCGA-HZ-A49G TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7645 TCGA-IB-7649 
        0.76         5.98         1.51        49.38        15.35 

$`9Q LOSS WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-FB-A4P5 TCGA-FB-A545 
       10.98         9.96        11.84         7.07         0.13         0.03 
TCGA-H6-A45N TCGA-HZ-7289 TCGA-HZ-7919 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
        7.63         7.86         0.66         0.26        12.13        12.03 
TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8315 TCGA-HZ-8317 
        0.26         0.62         0.99         0.69         0.92         0.49 
TCGA-HZ-8519 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49H TCGA-IB-7644 TCGA-IB-7646 
        0.10         0.16         2.96         1.02        11.41         4.77 
TCGA-IB-7647 TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 
       21.86        19.82        15.65        27.98         4.04         3.58 
TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 
       43.79        15.78        19.66        16.04         3.85        15.95 
TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS 
        0.56        17.13        10.82         9.83         7.20        15.12 
TCGA-IB-A5ST 
        0.26 

  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
             0.13              0.03 
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
            49.38             43.79 
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
             5.03              7.20 
[1] "0.1 - 49.4 (5.0)" "0.0 - 43.8 (7.2)"
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A545 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-H6-8124        TCGA-H6-A45N        TCGA-HZ-7289        TCGA-HZ-7918 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-HZ-8519        TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-HZ-A49H        TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-IB-7645        TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-IB-7651        TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-IB-7887        TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-IB-7891        TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-IB-8127        TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-IB-A5SS        TCGA-IB-A5ST 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A545 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-H6-8124        TCGA-H6-A45N        TCGA-HZ-7289        TCGA-HZ-7918 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-HZ-8519        TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-HZ-A49H        TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-IB-7645        TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-IB-7651        TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-IB-7887        TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-IB-7891        TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-IB-8127        TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-IB-A5SS        TCGA-IB-A5ST 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A545 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-H6-8124        TCGA-H6-A45N        TCGA-HZ-7289        TCGA-HZ-7918 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-HZ-8519        TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-HZ-A49H        TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-IB-7645        TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-IB-7651        TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-IB-7887        TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-IB-7891        TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-IB-8127        TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-IB-A5SS        TCGA-IB-A5ST 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
[1] "hr=" "1.9"
D43V2, continuous
                   vv
clus                STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  9Q LOSS MUTATED          0        0         1        11         0        0
  9Q LOSS WILD-TYPE        2        3         6        30         2        2
D43V3, multiclass
                   vv
clus                T1+T2 T3+T4
  9Q LOSS MUTATED       1    11
  9Q LOSS WILD-TYPE     5    40
D43V4, multiclass
       clus
vv      9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  T1+T2               1                 5
  T3+T4              11                40
D43V5, binary
                   cls
clus                 0  1
  9Q LOSS MUTATED    1 11
  9Q LOSS WILD-TYPE 13 32
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9Q LOSS MUTATED      1   11
  9Q LOSS WILD-TYPE   13   32
   clus
vv  9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  0               1                13
  1              11                32
                   vv
clus                M0 M1 MX
  9Q LOSS MUTATED    6  0  6
  9Q LOSS WILD-TYPE 26  2 17
D43V6, multiclass
    clus
vv   9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  M0               6                26
  M1               0                 2
  MX               6                17
D43V7, binary
                   cls
clus                 0  1
  9Q LOSS MUTATED    7  5
  9Q LOSS WILD-TYPE 24 21
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9Q LOSS MUTATED      7    5
  9Q LOSS WILD-TYPE   24   21
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  FEMALE               7                24
  MALE                 5                21
                   vv
clus                PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  9Q LOSS MUTATED                                    11
  9Q LOSS WILD-TYPE                                  40
                   vv
clus                PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  9Q LOSS MUTATED                                       1
  9Q LOSS WILD-TYPE                                     3
                   vv
clus                PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  9Q LOSS MUTATED                                                  0
  9Q LOSS WILD-TYPE                                                1
D43V8, multiclass
                                                  clus
vv                                                 9Q LOSS MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                           11
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               0
                                                  clus
vv                                                 9Q LOSS WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                             40
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                            3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                 1
D43V9, continuous
[1] "Remove cluster labels:" "9Q LOSS MUTATED"       
clus
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
                2                12 
       TCGA-F2-6880        TCGA-FB-A4P5        TCGA-H6-A45N        TCGA-IB-7644 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-IB-7651        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-IB-7891        TCGA-IB-8126        TCGA-IB-8127        TCGA-IB-A5SS 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
D43V10, continuous
[1] "Remove cluster labels:" "9Q LOSS MUTATED"       
clus
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
                2                 9 
       TCGA-FB-A4P5        TCGA-IB-7644        TCGA-IB-7651        TCGA-IB-7885 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-IB-7886        TCGA-IB-7891        TCGA-IB-8126        TCGA-IB-8127 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-IB-A5SS 
"9Q LOSS WILD-TYPE" 
                   vv
clus                R0 R1 RX
  9Q LOSS MUTATED    6  6  0
  9Q LOSS WILD-TYPE 26 15  2
D43V11, multiclass
    clus
vv   9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  R0               6                26
  R1               6                15
  RX               0                 2
D43V12, continuous

Clustering(44) Variable = 10P LOSS MUTATION ANALYSIS
D44V1, survival
                    sevent
clus2                 0  1
  10P LOSS MUTATED    4  6
  10P LOSS WILD-TYPE 31 13
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
                10                 44 
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
                 6                 13 
$`10P LOSS MUTATED`
TCGA-FB-A545 TCGA-H6-8124 TCGA-HZ-7289 TCGA-HZ-8005 TCGA-IB-7646 TCGA-IB-7885 
        0.03        12.89         7.86         3.91         4.77        27.98 
TCGA-IB-7886 TCGA-IB-7890 TCGA-IB-7893 TCGA-IB-A5SQ 
        4.04        19.66         3.85         7.20 

$`10P LOSS WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.96        11.84         7.07         5.03         5.19 
TCGA-FB-A4P5 TCGA-H6-A45N TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 
        0.13         7.63         0.92         0.66         0.13         0.26 
TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 
       12.13        12.03         0.26         0.62         0.99         0.69 
TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G 
        0.92         0.49         0.10         0.16         2.96         0.76 
TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7647 
        1.02         5.98         1.51        11.41        49.38        21.86 
TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 
       15.35        19.82        15.65         3.58        43.79        15.78 
TCGA-IB-7891 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP 
       16.04        15.95         0.56        17.13        10.82         9.83 
TCGA-IB-A5SS TCGA-IB-A5ST 
       15.12         0.26 

  10P LOSS MUTATED 10P LOSS WILD-TYPE 
              0.03               0.10 
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
             27.98              49.38 
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
             5.985              5.585 
[1] "0.0 - 28.0 (6.0)" "0.1 - 49.4 (5.6)"
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A545         TCGA-H6-8124 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-H6-A45N         TCGA-HZ-7289         TCGA-HZ-7918 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-HZ-7919         TCGA-HZ-7922         TCGA-HZ-7923 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-HZ-7924         TCGA-HZ-7925         TCGA-HZ-7926 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-HZ-8001         TCGA-HZ-8002         TCGA-HZ-8003 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-HZ-8005         TCGA-HZ-8315         TCGA-HZ-8317 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-HZ-8519         TCGA-HZ-8636         TCGA-HZ-8638 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-HZ-A49G         TCGA-HZ-A49H         TCGA-HZ-A4BH 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-HZ-A4BK         TCGA-IB-7644         TCGA-IB-7645 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-IB-7646         TCGA-IB-7647         TCGA-IB-7649 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-IB-7651         TCGA-IB-7652         TCGA-IB-7885 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-IB-7886         TCGA-IB-7887         TCGA-IB-7888 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-IB-7889         TCGA-IB-7890         TCGA-IB-7891 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-IB-7893         TCGA-IB-7897         TCGA-IB-8126 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-IB-8127         TCGA-IB-A5SO         TCGA-IB-A5SP 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-IB-A5SQ         TCGA-IB-A5SS         TCGA-IB-A5ST 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A545         TCGA-H6-8124 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-H6-A45N         TCGA-HZ-7289         TCGA-HZ-7918 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-HZ-7919         TCGA-HZ-7922         TCGA-HZ-7923 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-HZ-7924         TCGA-HZ-7925         TCGA-HZ-7926 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-HZ-8001         TCGA-HZ-8002         TCGA-HZ-8003 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-HZ-8005         TCGA-HZ-8315         TCGA-HZ-8317 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-HZ-8519         TCGA-HZ-8636         TCGA-HZ-8638 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-HZ-A49G         TCGA-HZ-A49H         TCGA-HZ-A4BH 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-HZ-A4BK         TCGA-IB-7644         TCGA-IB-7645 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-IB-7646         TCGA-IB-7647         TCGA-IB-7649 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-IB-7651         TCGA-IB-7652         TCGA-IB-7885 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-IB-7886         TCGA-IB-7887         TCGA-IB-7888 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-IB-7889         TCGA-IB-7890         TCGA-IB-7891 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-IB-7893         TCGA-IB-7897         TCGA-IB-8126 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-IB-8127         TCGA-IB-A5SO         TCGA-IB-A5SP 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-IB-A5SQ         TCGA-IB-A5SS         TCGA-IB-A5ST 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A545         TCGA-H6-8124 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-H6-A45N         TCGA-HZ-7289         TCGA-HZ-7918 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-HZ-7919         TCGA-HZ-7922         TCGA-HZ-7923 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-HZ-7924         TCGA-HZ-7925         TCGA-HZ-7926 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-HZ-8001         TCGA-HZ-8002         TCGA-HZ-8003 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-HZ-8005         TCGA-HZ-8315         TCGA-HZ-8317 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-HZ-8519         TCGA-HZ-8636         TCGA-HZ-8638 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-HZ-A49G         TCGA-HZ-A49H         TCGA-HZ-A4BH 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-HZ-A4BK         TCGA-IB-7644         TCGA-IB-7645 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-IB-7646         TCGA-IB-7647         TCGA-IB-7649 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-IB-7651         TCGA-IB-7652         TCGA-IB-7885 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-IB-7886         TCGA-IB-7887         TCGA-IB-7888 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-IB-7889         TCGA-IB-7890         TCGA-IB-7891 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-IB-7893         TCGA-IB-7897         TCGA-IB-8126 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-IB-8127         TCGA-IB-A5SO         TCGA-IB-A5SP 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-IB-A5SQ         TCGA-IB-A5SS         TCGA-IB-A5ST 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
[1] "hr=" "2"  
D44V2, continuous
                    vv
clus                 STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  10P LOSS MUTATED          0        2         1         7         0        0
  10P LOSS WILD-TYPE        2        1         6        34         2        2
D44V3, multiclass
                    vv
clus                 T1+T2 T3+T4
  10P LOSS MUTATED       2     8
  10P LOSS WILD-TYPE     4    43
D44V4, multiclass
       clus
vv      10P LOSS MUTATED 10P LOSS WILD-TYPE
  T1+T2                2                  4
  T3+T4                8                 43
D44V5, binary
                    cls
clus                  0  1
  10P LOSS MUTATED    3  7
  10P LOSS WILD-TYPE 11 36
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10P LOSS MUTATED      3    7
  10P LOSS WILD-TYPE   11   36
   clus
vv  10P LOSS MUTATED 10P LOSS WILD-TYPE
  0                3                 11
  1                7                 36
                    vv
clus                 M0 M1 MX
  10P LOSS MUTATED    8  0  2
  10P LOSS WILD-TYPE 24  2 21
D44V6, multiclass
    clus
vv   10P LOSS MUTATED 10P LOSS WILD-TYPE
  M0                8                 24
  M1                0                  2
  MX                2                 21
D44V7, binary
                    cls
clus                  0  1
  10P LOSS MUTATED    4  6
  10P LOSS WILD-TYPE 27 20
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10P LOSS MUTATED      4    6
  10P LOSS WILD-TYPE   27   20
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  FEMALE                4                 27
  MALE                  6                 20
                    vv
clus                 PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  10P LOSS MUTATED                                     9
  10P LOSS WILD-TYPE                                  42
                    vv
clus                 PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  10P LOSS MUTATED                                       1
  10P LOSS WILD-TYPE                                     3
                    vv
clus                 PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  10P LOSS MUTATED                                                  0
  10P LOSS WILD-TYPE                                                1
D44V8, multiclass
                                                  clus
vv                                                 10P LOSS MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                             9
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                0
                                                  clus
vv                                                 10P LOSS WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                              42
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                             3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                  1
D44V9, continuous
D44V10, continuous
                    vv
clus                 R0 R1 RX
  10P LOSS MUTATED    5  3  1
  10P LOSS WILD-TYPE 27 18  1
D44V11, multiclass
    clus
vv   10P LOSS MUTATED 10P LOSS WILD-TYPE
  R0                5                 27
  R1                3                 18
  RX                1                  1
D44V12, continuous

Clustering(45) Variable = 10Q LOSS MUTATION ANALYSIS
D45V1, survival
                    sevent
clus2                 0  1
  10Q LOSS MUTATED    5  5
  10Q LOSS WILD-TYPE 30 14
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
                10                 44 
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
                 5                 14 
$`10Q LOSS MUTATED`
TCGA-FB-A545 TCGA-H6-8124 TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-8005 TCGA-IB-7646 
        0.03        12.89         7.86         0.92         3.91         4.77 
TCGA-IB-7885 TCGA-IB-7887 TCGA-IB-7890 TCGA-IB-7893 
       27.98         3.58        19.66         3.85 

$`10Q LOSS WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.96        11.84         7.07         5.03         5.19 
TCGA-FB-A4P5 TCGA-H6-A45N TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 
        0.13         7.63         0.66         0.13         0.26        12.13 
TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8315 
       12.03         0.26         0.62         0.99         0.69         0.92 
TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H 
        0.49         0.10         0.16         2.96         0.76         1.02 
TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7647 TCGA-IB-7649 
        5.98         1.51        11.41        49.38        21.86        15.35 
TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7886 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7891 
       19.82        15.65         4.04        43.79        15.78        16.04 
TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ 
       15.95         0.56        17.13        10.82         9.83         7.20 
TCGA-IB-A5SS TCGA-IB-A5ST 
       15.12         0.26 

  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
              0.03               0.10 
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
             27.98              49.38 
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
             4.340              6.525 
[1] "0.0 - 28.0 (4.3)" "0.1 - 49.4 (6.5)"
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A545         TCGA-H6-8124 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-H6-A45N         TCGA-HZ-7289         TCGA-HZ-7918 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-HZ-7919         TCGA-HZ-7922         TCGA-HZ-7923 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-HZ-7924         TCGA-HZ-7925         TCGA-HZ-7926 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-HZ-8001         TCGA-HZ-8002         TCGA-HZ-8003 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-HZ-8005         TCGA-HZ-8315         TCGA-HZ-8317 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-HZ-8519         TCGA-HZ-8636         TCGA-HZ-8638 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-HZ-A49G         TCGA-HZ-A49H         TCGA-HZ-A4BH 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-HZ-A4BK         TCGA-IB-7644         TCGA-IB-7645 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-IB-7646         TCGA-IB-7647         TCGA-IB-7649 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-IB-7651         TCGA-IB-7652         TCGA-IB-7885 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-IB-7886         TCGA-IB-7887         TCGA-IB-7888 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-IB-7889         TCGA-IB-7890         TCGA-IB-7891 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-IB-7893         TCGA-IB-7897         TCGA-IB-8126 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-IB-8127         TCGA-IB-A5SO         TCGA-IB-A5SP 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-IB-A5SQ         TCGA-IB-A5SS         TCGA-IB-A5ST 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A545         TCGA-H6-8124 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-H6-A45N         TCGA-HZ-7289         TCGA-HZ-7918 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-HZ-7919         TCGA-HZ-7922         TCGA-HZ-7923 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-HZ-7924         TCGA-HZ-7925         TCGA-HZ-7926 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-HZ-8001         TCGA-HZ-8002         TCGA-HZ-8003 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-HZ-8005         TCGA-HZ-8315         TCGA-HZ-8317 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-HZ-8519         TCGA-HZ-8636         TCGA-HZ-8638 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-HZ-A49G         TCGA-HZ-A49H         TCGA-HZ-A4BH 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-HZ-A4BK         TCGA-IB-7644         TCGA-IB-7645 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-IB-7646         TCGA-IB-7647         TCGA-IB-7649 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-IB-7651         TCGA-IB-7652         TCGA-IB-7885 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-IB-7886         TCGA-IB-7887         TCGA-IB-7888 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-IB-7889         TCGA-IB-7890         TCGA-IB-7891 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-IB-7893         TCGA-IB-7897         TCGA-IB-8126 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-IB-8127         TCGA-IB-A5SO         TCGA-IB-A5SP 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-IB-A5SQ         TCGA-IB-A5SS         TCGA-IB-A5ST 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A545         TCGA-H6-8124 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-H6-A45N         TCGA-HZ-7289         TCGA-HZ-7918 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-HZ-7919         TCGA-HZ-7922         TCGA-HZ-7923 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-HZ-7924         TCGA-HZ-7925         TCGA-HZ-7926 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-HZ-8001         TCGA-HZ-8002         TCGA-HZ-8003 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-HZ-8005         TCGA-HZ-8315         TCGA-HZ-8317 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-HZ-8519         TCGA-HZ-8636         TCGA-HZ-8638 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-HZ-A49G         TCGA-HZ-A49H         TCGA-HZ-A4BH 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-HZ-A4BK         TCGA-IB-7644         TCGA-IB-7645 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-IB-7646         TCGA-IB-7647         TCGA-IB-7649 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-IB-7651         TCGA-IB-7652         TCGA-IB-7885 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-IB-7886         TCGA-IB-7887         TCGA-IB-7888 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-IB-7889         TCGA-IB-7890         TCGA-IB-7891 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-IB-7893         TCGA-IB-7897         TCGA-IB-8126 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-IB-8127         TCGA-IB-A5SO         TCGA-IB-A5SP 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-IB-A5SQ         TCGA-IB-A5SS         TCGA-IB-A5ST 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
[1] "hr=" "1.7"
D45V2, continuous
                    vv
clus                 STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  10Q LOSS MUTATED          0        1         1         8         0        0
  10Q LOSS WILD-TYPE        2        2         6        33         2        2
D45V3, multiclass
                    vv
clus                 T1+T2 T3+T4
  10Q LOSS MUTATED       1     9
  10Q LOSS WILD-TYPE     5    42
D45V4, multiclass
       clus
vv      10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  T1+T2                1                  5
  T3+T4                9                 42
D45V5, binary
                    cls
clus                  0  1
  10Q LOSS MUTATED    2  8
  10Q LOSS WILD-TYPE 12 35
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10Q LOSS MUTATED      2    8
  10Q LOSS WILD-TYPE   12   35
   clus
vv  10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  0                2                 12
  1                8                 35
                    vv
clus                 M0 M1 MX
  10Q LOSS MUTATED    8  0  2
  10Q LOSS WILD-TYPE 24  2 21
D45V6, multiclass
    clus
vv   10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  M0                8                 24
  M1                0                  2
  MX                2                 21
D45V7, binary
                    cls
clus                  0  1
  10Q LOSS MUTATED    4  6
  10Q LOSS WILD-TYPE 27 20
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10Q LOSS MUTATED      4    6
  10Q LOSS WILD-TYPE   27   20
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  FEMALE                4                 27
  MALE                  6                 20
                    vv
clus                 PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  10Q LOSS MUTATED                                     9
  10Q LOSS WILD-TYPE                                  42
                    vv
clus                 PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  10Q LOSS MUTATED                                       1
  10Q LOSS WILD-TYPE                                     3
                    vv
clus                 PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  10Q LOSS MUTATED                                                  0
  10Q LOSS WILD-TYPE                                                1
D45V8, multiclass
                                                  clus
vv                                                 10Q LOSS MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                             9
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                0
                                                  clus
vv                                                 10Q LOSS WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                              42
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                             3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                  1
D45V9, continuous
D45V10, continuous
[1] "Remove cluster labels:" "10Q LOSS MUTATED"      
clus
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
                 2                  9 
        TCGA-FB-A4P5         TCGA-IB-7644         TCGA-IB-7649 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-IB-7651         TCGA-IB-7886         TCGA-IB-7891 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-IB-8126         TCGA-IB-8127         TCGA-IB-A5SS 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
                    vv
clus                 R0 R1 RX
  10Q LOSS MUTATED    5  3  1
  10Q LOSS WILD-TYPE 27 18  1
D45V11, multiclass
    clus
vv   10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  R0                5                 27
  R1                3                 18
  RX                1                  1
D45V12, continuous

Clustering(46) Variable = 11P LOSS MUTATION ANALYSIS
D46V1, survival
                    sevent
clus2                 0  1
  11P LOSS MUTATED    3  2
  11P LOSS WILD-TYPE 32 17
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
                 5                 49 
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
                 2                 17 
$`11P LOSS MUTATED`
TCGA-F2-A44H TCGA-HZ-7918 TCGA-IB-7652 TCGA-IB-7886 TCGA-IB-7889 
        5.19         0.92        15.65         4.04        15.78 

$`11P LOSS WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-FB-A4P5 
       10.98         9.96        11.84         7.07         5.03         0.13 
TCGA-FB-A545 TCGA-H6-8124 TCGA-H6-A45N TCGA-HZ-7289 TCGA-HZ-7919 TCGA-HZ-7922 
        0.03        12.89         7.63         7.86         0.66         0.13 
TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 
        0.26        12.13        12.03         0.26         0.62         0.99 
TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8636 
        0.69         3.91         0.92         0.49         0.10         0.16 
TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 
        2.96         0.76         1.02         5.98         1.51        11.41 
TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7885 
       49.38         4.77        21.86        15.35        19.82        27.98 
TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 
        3.58        43.79        19.66        16.04         3.85        15.95 
TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS 
        0.56        17.13        10.82         9.83         7.20        15.12 
TCGA-IB-A5ST 
        0.26 

  11P LOSS MUTATED 11P LOSS WILD-TYPE 
              0.92               0.03 
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
             15.78              49.38 
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
              5.19               5.98 
[1] "0.9 - 15.8 (5.2)" "0.0 - 49.4 (6.0)"
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-FB-A4P5         TCGA-FB-A545         TCGA-H6-8124 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-H6-A45N         TCGA-HZ-7289         TCGA-HZ-7918 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-HZ-7919         TCGA-HZ-7922         TCGA-HZ-7923 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-HZ-7924         TCGA-HZ-7925         TCGA-HZ-7926 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-HZ-8001         TCGA-HZ-8002         TCGA-HZ-8003 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-HZ-8005         TCGA-HZ-8315         TCGA-HZ-8317 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-HZ-8519         TCGA-HZ-8636         TCGA-HZ-8638 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-HZ-A49G         TCGA-HZ-A49H         TCGA-HZ-A4BH 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-HZ-A4BK         TCGA-IB-7644         TCGA-IB-7645 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-IB-7646         TCGA-IB-7647         TCGA-IB-7649 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-IB-7651         TCGA-IB-7652         TCGA-IB-7885 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-IB-7886         TCGA-IB-7887         TCGA-IB-7888 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-IB-7889         TCGA-IB-7890         TCGA-IB-7891 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-IB-7893         TCGA-IB-7897         TCGA-IB-8126 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-IB-8127         TCGA-IB-A5SO         TCGA-IB-A5SP 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-IB-A5SQ         TCGA-IB-A5SS         TCGA-IB-A5ST 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-FB-A4P5         TCGA-FB-A545         TCGA-H6-8124 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-H6-A45N         TCGA-HZ-7289         TCGA-HZ-7918 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-HZ-7919         TCGA-HZ-7922         TCGA-HZ-7923 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-HZ-7924         TCGA-HZ-7925         TCGA-HZ-7926 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-HZ-8001         TCGA-HZ-8002         TCGA-HZ-8003 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-HZ-8005         TCGA-HZ-8315         TCGA-HZ-8317 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-HZ-8519         TCGA-HZ-8636         TCGA-HZ-8638 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-HZ-A49G         TCGA-HZ-A49H         TCGA-HZ-A4BH 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-HZ-A4BK         TCGA-IB-7644         TCGA-IB-7645 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-IB-7646         TCGA-IB-7647         TCGA-IB-7649 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-IB-7651         TCGA-IB-7652         TCGA-IB-7885 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-IB-7886         TCGA-IB-7887         TCGA-IB-7888 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-IB-7889         TCGA-IB-7890         TCGA-IB-7891 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-IB-7893         TCGA-IB-7897         TCGA-IB-8126 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-IB-8127         TCGA-IB-A5SO         TCGA-IB-A5SP 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-IB-A5SQ         TCGA-IB-A5SS         TCGA-IB-A5ST 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-FB-A4P5         TCGA-FB-A545         TCGA-H6-8124 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-H6-A45N         TCGA-HZ-7289         TCGA-HZ-7918 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-HZ-7919         TCGA-HZ-7922         TCGA-HZ-7923 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-HZ-7924         TCGA-HZ-7925         TCGA-HZ-7926 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-HZ-8001         TCGA-HZ-8002         TCGA-HZ-8003 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-HZ-8005         TCGA-HZ-8315         TCGA-HZ-8317 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-HZ-8519         TCGA-HZ-8636         TCGA-HZ-8638 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-HZ-A49G         TCGA-HZ-A49H         TCGA-HZ-A4BH 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-HZ-A4BK         TCGA-IB-7644         TCGA-IB-7645 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-IB-7646         TCGA-IB-7647         TCGA-IB-7649 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-IB-7651         TCGA-IB-7652         TCGA-IB-7885 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-IB-7886         TCGA-IB-7887         TCGA-IB-7888 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-IB-7889         TCGA-IB-7890         TCGA-IB-7891 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-IB-7893         TCGA-IB-7897         TCGA-IB-8126 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-IB-8127         TCGA-IB-A5SO         TCGA-IB-A5SP 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-IB-A5SQ         TCGA-IB-A5SS         TCGA-IB-A5ST 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
[1] "hr=" "1.4"
D46V2, continuous
                    vv
clus                 STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  11P LOSS MUTATED          0        0         1         4         0        0
  11P LOSS WILD-TYPE        2        3         6        37         2        2
D46V3, multiclass
                    vv
clus                 T1+T2 T3+T4
  11P LOSS MUTATED       0     5
  11P LOSS WILD-TYPE     6    46
D46V4, multiclass
       clus
vv      11P LOSS MUTATED 11P LOSS WILD-TYPE
  T1+T2                0                  6
  T3+T4                5                 46
D46V5, binary
                    cls
clus                  0  1
  11P LOSS MUTATED    1  4
  11P LOSS WILD-TYPE 13 39
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11P LOSS MUTATED      1    4
  11P LOSS WILD-TYPE   13   39
   clus
vv  11P LOSS MUTATED 11P LOSS WILD-TYPE
  0                1                 13
  1                4                 39
                    vv
clus                 M0 M1 MX
  11P LOSS MUTATED    5  0  0
  11P LOSS WILD-TYPE 27  2 23
D46V6, multiclass
    clus
vv   11P LOSS MUTATED 11P LOSS WILD-TYPE
  M0                5                 27
  M1                0                  2
  MX                0                 23
D46V7, binary
                    cls
clus                  0  1
  11P LOSS MUTATED    2  3
  11P LOSS WILD-TYPE 29 23
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11P LOSS MUTATED      2    3
  11P LOSS WILD-TYPE   29   23
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  FEMALE                2                 29
  MALE                  3                 23
                    vv
clus                 PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  11P LOSS MUTATED                                     5
  11P LOSS WILD-TYPE                                  46
                    vv
clus                 PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  11P LOSS MUTATED                                       0
  11P LOSS WILD-TYPE                                     4
                    vv
clus                 PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  11P LOSS MUTATED                                                  0
  11P LOSS WILD-TYPE                                                1
D46V8, multiclass
                                                  clus
vv                                                 11P LOSS MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                             5
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                0
                                                  clus
vv                                                 11P LOSS WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                              46
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                             4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                  1
D46V9, continuous
[1] "Remove cluster labels:" "11P LOSS MUTATED"      
clus
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
                 1                 13 
        TCGA-F2-6880         TCGA-FB-A4P5         TCGA-H6-8124 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-H6-A45N         TCGA-IB-7644         TCGA-IB-7649 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-IB-7651         TCGA-IB-7885         TCGA-IB-7887 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-IB-7891         TCGA-IB-8126         TCGA-IB-8127 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-IB-A5SS 
"11P LOSS WILD-TYPE" 
D46V10, continuous
[1] "Remove cluster labels:" "11P LOSS MUTATED"      
clus
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
                 1                 10 
        TCGA-FB-A4P5         TCGA-H6-8124         TCGA-IB-7644 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-IB-7649         TCGA-IB-7651         TCGA-IB-7885 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-IB-7891         TCGA-IB-8126         TCGA-IB-8127 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-IB-A5SS 
"11P LOSS WILD-TYPE" 
                    vv
clus                 R0 R1 RX
  11P LOSS MUTATED    3  2  0
  11P LOSS WILD-TYPE 29 19  2
D46V11, multiclass
    clus
vv   11P LOSS MUTATED 11P LOSS WILD-TYPE
  R0                3                 29
  R1                2                 19
  RX                0                  2
D46V12, continuous

Clustering(47) Variable = 11Q LOSS MUTATION ANALYSIS
D47V1, survival
                    sevent
clus2                 0  1
  11Q LOSS MUTATED    3  1
  11Q LOSS WILD-TYPE 32 18
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
                 4                 50 
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
                 1                 18 
$`11Q LOSS MUTATED`
TCGA-F2-A44H TCGA-HZ-7289 TCGA-HZ-7918 TCGA-IB-7647 
        5.19         7.86         0.92        21.86 

$`11Q LOSS WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-FB-A4P5 
       10.98         9.96        11.84         7.07         5.03         0.13 
TCGA-FB-A545 TCGA-H6-8124 TCGA-H6-A45N TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 
        0.03        12.89         7.63         0.66         0.13         0.26 
TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 
       12.13        12.03         0.26         0.62         0.99         0.69 
TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8636 TCGA-HZ-8638 
        3.91         0.92         0.49         0.10         0.16         2.96 
TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 
        0.76         1.02         5.98         1.51        11.41        49.38 
TCGA-IB-7646 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 
        4.77        15.35        19.82        15.65        27.98         4.04 
TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 
        3.58        43.79        15.78        19.66        16.04         3.85 
TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ 
       15.95         0.56        17.13        10.82         9.83         7.20 
TCGA-IB-A5SS TCGA-IB-A5ST 
       15.12         0.26 

  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
              0.92               0.03 
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
             21.86              49.38 
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
             6.525              5.505 
[1] "0.9 - 21.9 (6.5)" "0.0 - 49.4 (5.5)"
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-FB-A4P5         TCGA-FB-A545         TCGA-H6-8124 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-H6-A45N         TCGA-HZ-7289         TCGA-HZ-7918 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-HZ-7919         TCGA-HZ-7922         TCGA-HZ-7923 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-HZ-7924         TCGA-HZ-7925         TCGA-HZ-7926 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-HZ-8001         TCGA-HZ-8002         TCGA-HZ-8003 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-HZ-8005         TCGA-HZ-8315         TCGA-HZ-8317 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-HZ-8519         TCGA-HZ-8636         TCGA-HZ-8638 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-HZ-A49G         TCGA-HZ-A49H         TCGA-HZ-A4BH 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-HZ-A4BK         TCGA-IB-7644         TCGA-IB-7645 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-IB-7646         TCGA-IB-7647         TCGA-IB-7649 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-IB-7651         TCGA-IB-7652         TCGA-IB-7885 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-IB-7886         TCGA-IB-7887         TCGA-IB-7888 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-IB-7889         TCGA-IB-7890         TCGA-IB-7891 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-IB-7893         TCGA-IB-7897         TCGA-IB-8126 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-IB-8127         TCGA-IB-A5SO         TCGA-IB-A5SP 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-IB-A5SQ         TCGA-IB-A5SS         TCGA-IB-A5ST 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-FB-A4P5         TCGA-FB-A545         TCGA-H6-8124 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-H6-A45N         TCGA-HZ-7289         TCGA-HZ-7918 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-HZ-7919         TCGA-HZ-7922         TCGA-HZ-7923 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-HZ-7924         TCGA-HZ-7925         TCGA-HZ-7926 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-HZ-8001         TCGA-HZ-8002         TCGA-HZ-8003 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-HZ-8005         TCGA-HZ-8315         TCGA-HZ-8317 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-HZ-8519         TCGA-HZ-8636         TCGA-HZ-8638 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-HZ-A49G         TCGA-HZ-A49H         TCGA-HZ-A4BH 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-HZ-A4BK         TCGA-IB-7644         TCGA-IB-7645 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-IB-7646         TCGA-IB-7647         TCGA-IB-7649 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-IB-7651         TCGA-IB-7652         TCGA-IB-7885 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-IB-7886         TCGA-IB-7887         TCGA-IB-7888 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-IB-7889         TCGA-IB-7890         TCGA-IB-7891 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-IB-7893         TCGA-IB-7897         TCGA-IB-8126 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-IB-8127         TCGA-IB-A5SO         TCGA-IB-A5SP 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-IB-A5SQ         TCGA-IB-A5SS         TCGA-IB-A5ST 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-FB-A4P5         TCGA-FB-A545         TCGA-H6-8124 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-H6-A45N         TCGA-HZ-7289         TCGA-HZ-7918 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-HZ-7919         TCGA-HZ-7922         TCGA-HZ-7923 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-HZ-7924         TCGA-HZ-7925         TCGA-HZ-7926 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-HZ-8001         TCGA-HZ-8002         TCGA-HZ-8003 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-HZ-8005         TCGA-HZ-8315         TCGA-HZ-8317 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-HZ-8519         TCGA-HZ-8636         TCGA-HZ-8638 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-HZ-A49G         TCGA-HZ-A49H         TCGA-HZ-A4BH 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-HZ-A4BK         TCGA-IB-7644         TCGA-IB-7645 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-IB-7646         TCGA-IB-7647         TCGA-IB-7649 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-IB-7651         TCGA-IB-7652         TCGA-IB-7885 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-IB-7886         TCGA-IB-7887         TCGA-IB-7888 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-IB-7889         TCGA-IB-7890         TCGA-IB-7891 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-IB-7893         TCGA-IB-7897         TCGA-IB-8126 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-IB-8127         TCGA-IB-A5SO         TCGA-IB-A5SP 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-IB-A5SQ         TCGA-IB-A5SS         TCGA-IB-A5ST 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
[1] "hr=" "1.9"
D47V2, continuous
                    vv
clus                 STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  11Q LOSS MUTATED          0        0         1         3         0        0
  11Q LOSS WILD-TYPE        2        3         6        38         2        2
D47V3, multiclass
                    vv
clus                 T1+T2 T3+T4
  11Q LOSS MUTATED       0     4
  11Q LOSS WILD-TYPE     6    47
D47V4, multiclass
       clus
vv      11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  T1+T2                0                  6
  T3+T4                4                 47
D47V5, binary
                    cls
clus                  0  1
  11Q LOSS MUTATED    1  3
  11Q LOSS WILD-TYPE 13 40
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11Q LOSS MUTATED      1    3
  11Q LOSS WILD-TYPE   13   40
   clus
vv  11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  0                1                 13
  1                3                 40
                    vv
clus                 M0 M1 MX
  11Q LOSS MUTATED    3  0  1
  11Q LOSS WILD-TYPE 29  2 22
D47V6, multiclass
    clus
vv   11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  M0                3                 29
  M1                0                  2
  MX                1                 22
D47V7, binary
                    cls
clus                  0  1
  11Q LOSS MUTATED    1  3
  11Q LOSS WILD-TYPE 30 23
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11Q LOSS MUTATED      1    3
  11Q LOSS WILD-TYPE   30   23
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  FEMALE                1                 30
  MALE                  3                 23
                    vv
clus                 PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  11Q LOSS MUTATED                                     3
  11Q LOSS WILD-TYPE                                  48
                    vv
clus                 PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  11Q LOSS MUTATED                                       1
  11Q LOSS WILD-TYPE                                     3
                    vv
clus                 PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  11Q LOSS MUTATED                                                  0
  11Q LOSS WILD-TYPE                                                1
D47V8, multiclass
                                                  clus
vv                                                 11Q LOSS MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                             3
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                0
                                                  clus
vv                                                 11Q LOSS WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                              48
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                             3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                  1
D47V9, continuous
D47V10, continuous
                    vv
clus                 R0 R1 RX
  11Q LOSS MUTATED    2  1  1
  11Q LOSS WILD-TYPE 30 20  1
D47V11, multiclass
    clus
vv   11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  R0                2                 30
  R1                1                 20
  RX                1                  1
D47V12, continuous

Clustering(48) Variable = 12P LOSS MUTATION ANALYSIS
D48V1, survival
                    sevent
clus2                 0  1
  12P LOSS MUTATED    4  2
  12P LOSS WILD-TYPE 31 17
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
                 6                 48 
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
                 2                 17 
$`12P LOSS MUTATED`
TCGA-HZ-7919 TCGA-HZ-8636 TCGA-IB-7886 TCGA-IB-7893 TCGA-IB-8127 TCGA-IB-A5SP 
        0.66         0.16         4.04         3.85        17.13         9.83 

$`12P LOSS WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.96        11.84         7.07         5.03         5.19 
TCGA-FB-A4P5 TCGA-FB-A545 TCGA-H6-8124 TCGA-H6-A45N TCGA-HZ-7289 TCGA-HZ-7918 
        0.13         0.03        12.89         7.63         7.86         0.92 
TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 
        0.13         0.26        12.13        12.03         0.26         0.62 
TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8519 
        0.99         0.69         3.91         0.92         0.49         0.10 
TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 
        2.96         0.76         1.02         5.98         1.51        11.41 
TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 
       49.38         4.77        21.86        15.35        19.82        15.65 
TCGA-IB-7885 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 
       27.98         3.58        43.79        15.78        19.66        16.04 
TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-A5SO TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST 
       15.95         0.56        10.82         7.20        15.12         0.26 

  12P LOSS MUTATED 12P LOSS WILD-TYPE 
              0.16               0.03 
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
             17.13              49.38 
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
             3.945              6.525 
[1] "0.2 - 17.1 (3.9)" "0.0 - 49.4 (6.5)"
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A545         TCGA-H6-8124 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-H6-A45N         TCGA-HZ-7289         TCGA-HZ-7918 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-HZ-7919         TCGA-HZ-7922         TCGA-HZ-7923 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-HZ-7924         TCGA-HZ-7925         TCGA-HZ-7926 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-HZ-8001         TCGA-HZ-8002         TCGA-HZ-8003 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-HZ-8005         TCGA-HZ-8315         TCGA-HZ-8317 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-HZ-8519         TCGA-HZ-8636         TCGA-HZ-8638 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-HZ-A49G         TCGA-HZ-A49H         TCGA-HZ-A4BH 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-HZ-A4BK         TCGA-IB-7644         TCGA-IB-7645 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-IB-7646         TCGA-IB-7647         TCGA-IB-7649 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-IB-7651         TCGA-IB-7652         TCGA-IB-7885 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-IB-7886         TCGA-IB-7887         TCGA-IB-7888 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-IB-7889         TCGA-IB-7890         TCGA-IB-7891 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-IB-7893         TCGA-IB-7897         TCGA-IB-8126 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-IB-8127         TCGA-IB-A5SO         TCGA-IB-A5SP 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-IB-A5SQ         TCGA-IB-A5SS         TCGA-IB-A5ST 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A545         TCGA-H6-8124 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-H6-A45N         TCGA-HZ-7289         TCGA-HZ-7918 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-HZ-7919         TCGA-HZ-7922         TCGA-HZ-7923 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-HZ-7924         TCGA-HZ-7925         TCGA-HZ-7926 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-HZ-8001         TCGA-HZ-8002         TCGA-HZ-8003 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-HZ-8005         TCGA-HZ-8315         TCGA-HZ-8317 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-HZ-8519         TCGA-HZ-8636         TCGA-HZ-8638 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-HZ-A49G         TCGA-HZ-A49H         TCGA-HZ-A4BH 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-HZ-A4BK         TCGA-IB-7644         TCGA-IB-7645 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-IB-7646         TCGA-IB-7647         TCGA-IB-7649 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-IB-7651         TCGA-IB-7652         TCGA-IB-7885 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-IB-7886         TCGA-IB-7887         TCGA-IB-7888 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-IB-7889         TCGA-IB-7890         TCGA-IB-7891 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-IB-7893         TCGA-IB-7897         TCGA-IB-8126 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-IB-8127         TCGA-IB-A5SO         TCGA-IB-A5SP 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-IB-A5SQ         TCGA-IB-A5SS         TCGA-IB-A5ST 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A545         TCGA-H6-8124 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-H6-A45N         TCGA-HZ-7289         TCGA-HZ-7918 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-HZ-7919         TCGA-HZ-7922         TCGA-HZ-7923 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-HZ-7924         TCGA-HZ-7925         TCGA-HZ-7926 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-HZ-8001         TCGA-HZ-8002         TCGA-HZ-8003 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-HZ-8005         TCGA-HZ-8315         TCGA-HZ-8317 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-HZ-8519         TCGA-HZ-8636         TCGA-HZ-8638 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-HZ-A49G         TCGA-HZ-A49H         TCGA-HZ-A4BH 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-HZ-A4BK         TCGA-IB-7644         TCGA-IB-7645 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-IB-7646         TCGA-IB-7647         TCGA-IB-7649 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-IB-7651         TCGA-IB-7652         TCGA-IB-7885 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-IB-7886         TCGA-IB-7887         TCGA-IB-7888 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-IB-7889         TCGA-IB-7890         TCGA-IB-7891 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-IB-7893         TCGA-IB-7897         TCGA-IB-8126 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-IB-8127         TCGA-IB-A5SO         TCGA-IB-A5SP 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-IB-A5SQ         TCGA-IB-A5SS         TCGA-IB-A5ST 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
[1] "hr=" "1.8"
D48V2, continuous
                    vv
clus                 STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  12P LOSS MUTATED          0        0         2         3         0        1
  12P LOSS WILD-TYPE        2        3         5        38         2        1
D48V3, multiclass
                    vv
clus                 T1+T2 T3+T4
  12P LOSS MUTATED       0     6
  12P LOSS WILD-TYPE     6    45
D48V4, multiclass
       clus
vv      12P LOSS MUTATED 12P LOSS WILD-TYPE
  T1+T2                0                  6
  T3+T4                6                 45
D48V5, binary
                    cls
clus                  0  1
  12P LOSS MUTATED    3  3
  12P LOSS WILD-TYPE 11 40
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12P LOSS MUTATED      3    3
  12P LOSS WILD-TYPE   11   40
   clus
vv  12P LOSS MUTATED 12P LOSS WILD-TYPE
  0                3                 11
  1                3                 40
                    vv
clus                 M0 M1 MX
  12P LOSS MUTATED    5  1  0
  12P LOSS WILD-TYPE 27  1 23
D48V6, multiclass
    clus
vv   12P LOSS MUTATED 12P LOSS WILD-TYPE
  M0                5                 27
  M1                1                  1
  MX                0                 23
D48V7, binary
                    cls
clus                  0  1
  12P LOSS MUTATED    2  4
  12P LOSS WILD-TYPE 29 22
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12P LOSS MUTATED      2    4
  12P LOSS WILD-TYPE   29   22
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  FEMALE                2                 29
  MALE                  4                 22
                    vv
clus                 PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  12P LOSS MUTATED                                     6
  12P LOSS WILD-TYPE                                  45
                    vv
clus                 PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  12P LOSS MUTATED                                       0
  12P LOSS WILD-TYPE                                     4
                    vv
clus                 PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  12P LOSS MUTATED                                                  0
  12P LOSS WILD-TYPE                                                1
D48V8, multiclass
                                                  clus
vv                                                 12P LOSS MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                             6
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                0
                                                  clus
vv                                                 12P LOSS WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                              45
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                             4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                  1
D48V9, continuous
[1] "Remove cluster labels:" "12P LOSS MUTATED"      
clus
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
                 2                 12 
        TCGA-F2-6880         TCGA-FB-A4P5         TCGA-H6-8124 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-H6-A45N         TCGA-IB-7644         TCGA-IB-7649 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-IB-7651         TCGA-IB-7885         TCGA-IB-7887 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-IB-7891         TCGA-IB-8126         TCGA-IB-A5SS 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
D48V10, continuous
[1] "Remove cluster labels:" "12P LOSS MUTATED"      
clus
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
                 2                  9 
        TCGA-FB-A4P5         TCGA-H6-8124         TCGA-IB-7644 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-IB-7649         TCGA-IB-7651         TCGA-IB-7885 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-IB-7891         TCGA-IB-8126         TCGA-IB-A5SS 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
                    vv
clus                 R0 R1 RX
  12P LOSS MUTATED    1  5  0
  12P LOSS WILD-TYPE 31 16  2
D48V11, multiclass
    clus
vv   12P LOSS MUTATED 12P LOSS WILD-TYPE
  R0                1                 31
  R1                5                 16
  RX                0                  2
D48V12, continuous

Clustering(49) Variable = 12Q LOSS MUTATION ANALYSIS
D49V1, survival
                    sevent
clus2                 0  1
  12Q LOSS MUTATED    3  4
  12Q LOSS WILD-TYPE 32 15
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                 7                 47 
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                 4                 15 
$`12Q LOSS MUTATED`
TCGA-HZ-8636 TCGA-IB-7652 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7890 TCGA-IB-7893 
        0.16        15.65         4.04         3.58        19.66         3.85 
TCGA-IB-8127 
       17.13 

$`12Q LOSS WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.96        11.84         7.07         5.03         5.19 
TCGA-FB-A4P5 TCGA-FB-A545 TCGA-H6-8124 TCGA-H6-A45N TCGA-HZ-7289 TCGA-HZ-7918 
        0.13         0.03        12.89         7.63         7.86         0.92 
TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 
        0.66         0.13         0.26        12.13        12.03         0.26 
TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 
        0.62         0.99         0.69         3.91         0.92         0.49 
TCGA-HZ-8519 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK 
        0.10         2.96         0.76         1.02         5.98         1.51 
TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 
       11.41        49.38         4.77        21.86        15.35        19.82 
TCGA-IB-7885 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7891 TCGA-IB-7897 TCGA-IB-8126 
       27.98        43.79        15.78        16.04        15.95         0.56 
TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST 
       10.82         9.83         7.20        15.12         0.26 

  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
              0.16               0.03 
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
             19.66              49.38 
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
              4.04               5.98 
[1] "0.2 - 19.7 (4.0)" "0.0 - 49.4 (6.0)"
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A545         TCGA-H6-8124 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-H6-A45N         TCGA-HZ-7289         TCGA-HZ-7918 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-HZ-7919         TCGA-HZ-7922         TCGA-HZ-7923 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-HZ-7924         TCGA-HZ-7925         TCGA-HZ-7926 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-HZ-8001         TCGA-HZ-8002         TCGA-HZ-8003 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-HZ-8005         TCGA-HZ-8315         TCGA-HZ-8317 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-HZ-8519         TCGA-HZ-8636         TCGA-HZ-8638 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-HZ-A49G         TCGA-HZ-A49H         TCGA-HZ-A4BH 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-HZ-A4BK         TCGA-IB-7644         TCGA-IB-7645 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-IB-7646         TCGA-IB-7647         TCGA-IB-7649 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-IB-7651         TCGA-IB-7652         TCGA-IB-7885 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-IB-7886         TCGA-IB-7887         TCGA-IB-7888 
  "12Q LOSS MUTATED"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-IB-7889         TCGA-IB-7890         TCGA-IB-7891 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-IB-7893         TCGA-IB-7897         TCGA-IB-8126 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-IB-8127         TCGA-IB-A5SO         TCGA-IB-A5SP 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-IB-A5SQ         TCGA-IB-A5SS         TCGA-IB-A5ST 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A545         TCGA-H6-8124 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-H6-A45N         TCGA-HZ-7289         TCGA-HZ-7918 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-HZ-7919         TCGA-HZ-7922         TCGA-HZ-7923 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-HZ-7924         TCGA-HZ-7925         TCGA-HZ-7926 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-HZ-8001         TCGA-HZ-8002         TCGA-HZ-8003 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-HZ-8005         TCGA-HZ-8315         TCGA-HZ-8317 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-HZ-8519         TCGA-HZ-8636         TCGA-HZ-8638 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-HZ-A49G         TCGA-HZ-A49H         TCGA-HZ-A4BH 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-HZ-A4BK         TCGA-IB-7644         TCGA-IB-7645 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-IB-7646         TCGA-IB-7647         TCGA-IB-7649 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-IB-7651         TCGA-IB-7652         TCGA-IB-7885 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-IB-7886         TCGA-IB-7887         TCGA-IB-7888 
  "12Q LOSS MUTATED"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-IB-7889         TCGA-IB-7890         TCGA-IB-7891 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-IB-7893         TCGA-IB-7897         TCGA-IB-8126 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-IB-8127         TCGA-IB-A5SO         TCGA-IB-A5SP 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-IB-A5SQ         TCGA-IB-A5SS         TCGA-IB-A5ST 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A545         TCGA-H6-8124 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-H6-A45N         TCGA-HZ-7289         TCGA-HZ-7918 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-HZ-7919         TCGA-HZ-7922         TCGA-HZ-7923 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-HZ-7924         TCGA-HZ-7925         TCGA-HZ-7926 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-HZ-8001         TCGA-HZ-8002         TCGA-HZ-8003 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-HZ-8005         TCGA-HZ-8315         TCGA-HZ-8317 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-HZ-8519         TCGA-HZ-8636         TCGA-HZ-8638 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-HZ-A49G         TCGA-HZ-A49H         TCGA-HZ-A4BH 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-HZ-A4BK         TCGA-IB-7644         TCGA-IB-7645 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-IB-7646         TCGA-IB-7647         TCGA-IB-7649 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-IB-7651         TCGA-IB-7652         TCGA-IB-7885 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-IB-7886         TCGA-IB-7887         TCGA-IB-7888 
  "12Q LOSS MUTATED"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-IB-7889         TCGA-IB-7890         TCGA-IB-7891 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-IB-7893         TCGA-IB-7897         TCGA-IB-8126 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-IB-8127         TCGA-IB-A5SO         TCGA-IB-A5SP 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-IB-A5SQ         TCGA-IB-A5SS         TCGA-IB-A5ST 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
[1] "hr=" "1.9"
D49V2, continuous
                    vv
clus                 STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  12Q LOSS MUTATED          0        1         1         4         0        1
  12Q LOSS WILD-TYPE        2        2         6        37         2        1
D49V3, multiclass
                    vv
clus                 T1+T2 T3+T4
  12Q LOSS MUTATED       1     6
  12Q LOSS WILD-TYPE     5    45
D49V4, multiclass
       clus
vv      12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  T1+T2                1                  5
  T3+T4                6                 45
D49V5, binary
                    cls
clus                  0  1
  12Q LOSS MUTATED    3  4
  12Q LOSS WILD-TYPE 11 39
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12Q LOSS MUTATED      3    4
  12Q LOSS WILD-TYPE   11   39
   clus
vv  12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  0                3                 11
  1                4                 39
                    vv
clus                 M0 M1 MX
  12Q LOSS MUTATED    6  1  0
  12Q LOSS WILD-TYPE 26  1 23
D49V6, multiclass
    clus
vv   12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  M0                6                 26
  M1                1                  1
  MX                0                 23
D49V7, binary
                    cls
clus                  0  1
  12Q LOSS MUTATED    3  4
  12Q LOSS WILD-TYPE 28 22
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12Q LOSS MUTATED      3    4
  12Q LOSS WILD-TYPE   28   22
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  FEMALE                3                 28
  MALE                  4                 22
                    vv
clus                 PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  12Q LOSS MUTATED                                     7
  12Q LOSS WILD-TYPE                                  44
                    vv
clus                 PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  12Q LOSS MUTATED                                       0
  12Q LOSS WILD-TYPE                                     4
                    vv
clus                 PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  12Q LOSS MUTATED                                                  0
  12Q LOSS WILD-TYPE                                                1
D49V8, multiclass
                                                  clus
vv                                                 12Q LOSS MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                             7
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                0
                                                  clus
vv                                                 12Q LOSS WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                              44
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                             4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                  1
D49V9, continuous
D49V10, continuous
[1] "Remove cluster labels:" "12Q LOSS MUTATED"      
clus
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                 2                  9 
        TCGA-FB-A4P5         TCGA-H6-8124         TCGA-IB-7644 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-IB-7649         TCGA-IB-7651         TCGA-IB-7885 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-IB-7891         TCGA-IB-8126         TCGA-IB-A5SS 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
                    vv
clus                 R0 R1 RX
  12Q LOSS MUTATED    2  5  0
  12Q LOSS WILD-TYPE 30 16  2
D49V11, multiclass
    clus
vv   12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  R0                2                 30
  R1                5                 16
  RX                0                  2
D49V12, continuous

Clustering(50) Variable = 13Q LOSS MUTATION ANALYSIS
D50V1, survival
                    sevent
clus2                 0  1
  13Q LOSS MUTATED    6  3
  13Q LOSS WILD-TYPE 29 16
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
                 9                 45 
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
                 3                 16 
$`13Q LOSS MUTATED`
TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-8636 TCGA-HZ-A4BK TCGA-IB-7646 TCGA-IB-7885 
        7.86         0.92         0.16         1.51         4.77        27.98 
TCGA-IB-7886 TCGA-IB-8127 TCGA-IB-A5SS 
        4.04        17.13        15.12 

$`13Q LOSS WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.96        11.84         7.07         5.03         5.19 
TCGA-FB-A4P5 TCGA-FB-A545 TCGA-H6-8124 TCGA-H6-A45N TCGA-HZ-7919 TCGA-HZ-7922 
        0.13         0.03        12.89         7.63         0.66         0.13 
TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 
        0.26        12.13        12.03         0.26         0.62         0.99 
TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8638 
        0.69         3.91         0.92         0.49         0.10         2.96 
TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7647 
        0.76         1.02         5.98        11.41        49.38        21.86 
TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 
       15.35        19.82        15.65         3.58        43.79        15.78 
TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-A5SO 
       19.66        16.04         3.85        15.95         0.56        10.82 
TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5ST 
        9.83         7.20         0.26 

  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
              0.16               0.03 
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
             27.98              49.38 
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
              4.77               5.98 
[1] "0.2 - 28.0 (4.8)" "0.0 - 49.4 (6.0)"
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A545         TCGA-H6-8124 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-H6-A45N         TCGA-HZ-7289         TCGA-HZ-7918 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-HZ-7919         TCGA-HZ-7922         TCGA-HZ-7923 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-HZ-7924         TCGA-HZ-7925         TCGA-HZ-7926 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-HZ-8001         TCGA-HZ-8002         TCGA-HZ-8003 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-HZ-8005         TCGA-HZ-8315         TCGA-HZ-8317 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-HZ-8519         TCGA-HZ-8636         TCGA-HZ-8638 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-HZ-A49G         TCGA-HZ-A49H         TCGA-HZ-A4BH 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-HZ-A4BK         TCGA-IB-7644         TCGA-IB-7645 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-IB-7646         TCGA-IB-7647         TCGA-IB-7649 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-IB-7651         TCGA-IB-7652         TCGA-IB-7885 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-IB-7886         TCGA-IB-7887         TCGA-IB-7888 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-IB-7889         TCGA-IB-7890         TCGA-IB-7891 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-IB-7893         TCGA-IB-7897         TCGA-IB-8126 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-IB-8127         TCGA-IB-A5SO         TCGA-IB-A5SP 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-IB-A5SQ         TCGA-IB-A5SS         TCGA-IB-A5ST 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A545         TCGA-H6-8124 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-H6-A45N         TCGA-HZ-7289         TCGA-HZ-7918 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-HZ-7919         TCGA-HZ-7922         TCGA-HZ-7923 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-HZ-7924         TCGA-HZ-7925         TCGA-HZ-7926 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-HZ-8001         TCGA-HZ-8002         TCGA-HZ-8003 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-HZ-8005         TCGA-HZ-8315         TCGA-HZ-8317 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-HZ-8519         TCGA-HZ-8636         TCGA-HZ-8638 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-HZ-A49G         TCGA-HZ-A49H         TCGA-HZ-A4BH 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-HZ-A4BK         TCGA-IB-7644         TCGA-IB-7645 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-IB-7646         TCGA-IB-7647         TCGA-IB-7649 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-IB-7651         TCGA-IB-7652         TCGA-IB-7885 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-IB-7886         TCGA-IB-7887         TCGA-IB-7888 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-IB-7889         TCGA-IB-7890         TCGA-IB-7891 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-IB-7893         TCGA-IB-7897         TCGA-IB-8126 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-IB-8127         TCGA-IB-A5SO         TCGA-IB-A5SP 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-IB-A5SQ         TCGA-IB-A5SS         TCGA-IB-A5ST 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A545         TCGA-H6-8124 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-H6-A45N         TCGA-HZ-7289         TCGA-HZ-7918 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-HZ-7919         TCGA-HZ-7922         TCGA-HZ-7923 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-HZ-7924         TCGA-HZ-7925         TCGA-HZ-7926 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-HZ-8001         TCGA-HZ-8002         TCGA-HZ-8003 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-HZ-8005         TCGA-HZ-8315         TCGA-HZ-8317 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-HZ-8519         TCGA-HZ-8636         TCGA-HZ-8638 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-HZ-A49G         TCGA-HZ-A49H         TCGA-HZ-A4BH 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-HZ-A4BK         TCGA-IB-7644         TCGA-IB-7645 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-IB-7646         TCGA-IB-7647         TCGA-IB-7649 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-IB-7651         TCGA-IB-7652         TCGA-IB-7885 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-IB-7886         TCGA-IB-7887         TCGA-IB-7888 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-IB-7889         TCGA-IB-7890         TCGA-IB-7891 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-IB-7893         TCGA-IB-7897         TCGA-IB-8126 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-IB-8127         TCGA-IB-A5SO         TCGA-IB-A5SP 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-IB-A5SQ         TCGA-IB-A5SS         TCGA-IB-A5ST 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D50V2, continuous
                    vv
clus                 STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  13Q LOSS MUTATED          0        0         0         8         0        1
  13Q LOSS WILD-TYPE        2        3         7        33         2        1
D50V3, multiclass
                    vv
clus                 T1+T2 T3+T4
  13Q LOSS MUTATED       0     9
  13Q LOSS WILD-TYPE     6    42
D50V4, multiclass
       clus
vv      13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  T1+T2                0                  6
  T3+T4                9                 42
D50V5, binary
                    cls
clus                  0  1
  13Q LOSS MUTATED    1  8
  13Q LOSS WILD-TYPE 13 35
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  13Q LOSS MUTATED      1    8
  13Q LOSS WILD-TYPE   13   35
   clus
vv  13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  0                1                 13
  1                8                 35
                    vv
clus                 M0 M1 MX
  13Q LOSS MUTATED    6  1  2
  13Q LOSS WILD-TYPE 26  1 21
D50V6, multiclass
    clus
vv   13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  M0                6                 26
  M1                1                  1
  MX                2                 21
D50V7, binary
                    cls
clus                  0  1
  13Q LOSS MUTATED    3  6
  13Q LOSS WILD-TYPE 28 20
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  13Q LOSS MUTATED      3    6
  13Q LOSS WILD-TYPE   28   20
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  FEMALE                3                 28
  MALE                  6                 20
                    vv
clus                 PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  13Q LOSS MUTATED                                     7
  13Q LOSS WILD-TYPE                                  44
                    vv
clus                 PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  13Q LOSS MUTATED                                       2
  13Q LOSS WILD-TYPE                                     2
                    vv
clus                 PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  13Q LOSS MUTATED                                                  0
  13Q LOSS WILD-TYPE                                                1
D50V8, multiclass
                                                  clus
vv                                                 13Q LOSS MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                             7
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           2
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                0
                                                  clus
vv                                                 13Q LOSS WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                              44
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                             2
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                  1
D50V9, continuous
D50V10, continuous
                    vv
clus                 R0 R1 RX
  13Q LOSS MUTATED    3  5  1
  13Q LOSS WILD-TYPE 29 16  1
D50V11, multiclass
    clus
vv   13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  R0                3                 29
  R1                5                 16
  RX                1                  1
D50V12, continuous

Clustering(51) Variable = 15Q LOSS MUTATION ANALYSIS
D51V1, survival
                    sevent
clus2                 0  1
  15Q LOSS MUTATED    5  3
  15Q LOSS WILD-TYPE 30 16
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
                 8                 46 
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
                 3                 16 
$`15Q LOSS MUTATED`
TCGA-F2-6879 TCGA-FB-A545 TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7890 TCGA-IB-7893 
       10.98         0.03         1.51        11.41        19.66         3.85 
TCGA-IB-8127 TCGA-IB-A5SP 
       17.13         9.83 

$`15Q LOSS WILD-TYPE`
TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A4P5 
        9.96        11.84         7.07         5.03         5.19         0.13 
TCGA-H6-8124 TCGA-H6-A45N TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 
       12.89         7.63         7.86         0.92         0.66         0.13 
TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 
        0.26        12.13        12.03         0.26         0.62         0.99 
TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8636 
        0.69         3.91         0.92         0.49         0.10         0.16 
TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-IB-7645 TCGA-IB-7646 
        2.96         0.76         1.02         5.98        49.38         4.77 
TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 
       21.86        15.35        19.82        15.65        27.98         4.04 
TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7891 TCGA-IB-7897 TCGA-IB-8126 
        3.58        43.79        15.78        16.04        15.95         0.56 
TCGA-IB-A5SO TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST 
       10.82         7.20        15.12         0.26 

  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
              0.03               0.10 
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
             19.66              49.38 
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
            10.405              5.110 
[1] "0.0 - 19.7 (10.4)" "0.1 - 49.4 (5.1)" 
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A545         TCGA-H6-8124 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-H6-A45N         TCGA-HZ-7289         TCGA-HZ-7918 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-HZ-7919         TCGA-HZ-7922         TCGA-HZ-7923 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-HZ-7924         TCGA-HZ-7925         TCGA-HZ-7926 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-HZ-8001         TCGA-HZ-8002         TCGA-HZ-8003 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-HZ-8005         TCGA-HZ-8315         TCGA-HZ-8317 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-HZ-8519         TCGA-HZ-8636         TCGA-HZ-8638 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-HZ-A49G         TCGA-HZ-A49H         TCGA-HZ-A4BH 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-HZ-A4BK         TCGA-IB-7644         TCGA-IB-7645 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-IB-7646         TCGA-IB-7647         TCGA-IB-7649 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-IB-7651         TCGA-IB-7652         TCGA-IB-7885 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-IB-7886         TCGA-IB-7887         TCGA-IB-7888 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-IB-7889         TCGA-IB-7890         TCGA-IB-7891 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-IB-7893         TCGA-IB-7897         TCGA-IB-8126 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-IB-8127         TCGA-IB-A5SO         TCGA-IB-A5SP 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-IB-A5SQ         TCGA-IB-A5SS         TCGA-IB-A5ST 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A545         TCGA-H6-8124 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-H6-A45N         TCGA-HZ-7289         TCGA-HZ-7918 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-HZ-7919         TCGA-HZ-7922         TCGA-HZ-7923 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-HZ-7924         TCGA-HZ-7925         TCGA-HZ-7926 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-HZ-8001         TCGA-HZ-8002         TCGA-HZ-8003 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-HZ-8005         TCGA-HZ-8315         TCGA-HZ-8317 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-HZ-8519         TCGA-HZ-8636         TCGA-HZ-8638 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-HZ-A49G         TCGA-HZ-A49H         TCGA-HZ-A4BH 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-HZ-A4BK         TCGA-IB-7644         TCGA-IB-7645 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-IB-7646         TCGA-IB-7647         TCGA-IB-7649 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-IB-7651         TCGA-IB-7652         TCGA-IB-7885 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-IB-7886         TCGA-IB-7887         TCGA-IB-7888 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-IB-7889         TCGA-IB-7890         TCGA-IB-7891 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-IB-7893         TCGA-IB-7897         TCGA-IB-8126 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-IB-8127         TCGA-IB-A5SO         TCGA-IB-A5SP 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-IB-A5SQ         TCGA-IB-A5SS         TCGA-IB-A5ST 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A545         TCGA-H6-8124 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-H6-A45N         TCGA-HZ-7289         TCGA-HZ-7918 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-HZ-7919         TCGA-HZ-7922         TCGA-HZ-7923 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-HZ-7924         TCGA-HZ-7925         TCGA-HZ-7926 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-HZ-8001         TCGA-HZ-8002         TCGA-HZ-8003 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-HZ-8005         TCGA-HZ-8315         TCGA-HZ-8317 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-HZ-8519         TCGA-HZ-8636         TCGA-HZ-8638 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-HZ-A49G         TCGA-HZ-A49H         TCGA-HZ-A4BH 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-HZ-A4BK         TCGA-IB-7644         TCGA-IB-7645 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-IB-7646         TCGA-IB-7647         TCGA-IB-7649 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-IB-7651         TCGA-IB-7652         TCGA-IB-7885 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-IB-7886         TCGA-IB-7887         TCGA-IB-7888 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-IB-7889         TCGA-IB-7890         TCGA-IB-7891 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-IB-7893         TCGA-IB-7897         TCGA-IB-8126 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-IB-8127         TCGA-IB-A5SO         TCGA-IB-A5SP 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-IB-A5SQ         TCGA-IB-A5SS         TCGA-IB-A5ST 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D51V2, continuous
                    vv
clus                 STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  15Q LOSS MUTATED          0        1         2         4         0        1
  15Q LOSS WILD-TYPE        2        2         5        37         2        1
D51V3, multiclass
                    vv
clus                 T1+T2 T3+T4
  15Q LOSS MUTATED       1     7
  15Q LOSS WILD-TYPE     5    44
D51V4, multiclass
       clus
vv      15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  T1+T2                1                  5
  T3+T4                7                 44
D51V5, binary
                    cls
clus                  0  1
  15Q LOSS MUTATED    3  5
  15Q LOSS WILD-TYPE 11 38
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  15Q LOSS MUTATED      3    5
  15Q LOSS WILD-TYPE   11   38
   clus
vv  15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  0                3                 11
  1                5                 38
                    vv
clus                 M0 M1 MX
  15Q LOSS MUTATED    6  1  1
  15Q LOSS WILD-TYPE 26  1 22
D51V6, multiclass
    clus
vv   15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  M0                6                 26
  M1                1                  1
  MX                1                 22
D51V7, binary
                    cls
clus                  0  1
  15Q LOSS MUTATED    2  6
  15Q LOSS WILD-TYPE 29 20
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  15Q LOSS MUTATED      2    6
  15Q LOSS WILD-TYPE   29   20
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  FEMALE                2                 29
  MALE                  6                 20
                    vv
clus                 PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  15Q LOSS MUTATED                                     6
  15Q LOSS WILD-TYPE                                  45
                    vv
clus                 PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  15Q LOSS MUTATED                                       1
  15Q LOSS WILD-TYPE                                     3
                    vv
clus                 PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  15Q LOSS MUTATED                                                  0
  15Q LOSS WILD-TYPE                                                1
D51V8, multiclass
                                                  clus
vv                                                 15Q LOSS MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                             6
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                0
                                                  clus
vv                                                 15Q LOSS WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                              45
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                             3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                  1
D51V9, continuous
[1] "Remove cluster labels:" "15Q LOSS MUTATED"      
clus
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
                 2                 12 
        TCGA-F2-6880         TCGA-FB-A4P5         TCGA-H6-8124 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-H6-A45N         TCGA-IB-7649         TCGA-IB-7651 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-IB-7885         TCGA-IB-7886         TCGA-IB-7887 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-IB-7891         TCGA-IB-8126         TCGA-IB-A5SS 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
D51V10, continuous
[1] "Remove cluster labels:" "15Q LOSS MUTATED"      
clus
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
                 2                  9 
        TCGA-FB-A4P5         TCGA-H6-8124         TCGA-IB-7649 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-IB-7651         TCGA-IB-7885         TCGA-IB-7886 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-IB-7891         TCGA-IB-8126         TCGA-IB-A5SS 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
                    vv
clus                 R0 R1 RX
  15Q LOSS MUTATED    3  4  0
  15Q LOSS WILD-TYPE 29 17  2
D51V11, multiclass
    clus
vv   15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  R0                3                 29
  R1                4                 17
  RX                0                  2
D51V12, continuous

Clustering(52) Variable = 17P LOSS MUTATION ANALYSIS
D52V1, survival
                    sevent
clus2                 0  1
  17P LOSS MUTATED   13  6
  17P LOSS WILD-TYPE 22 13
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
                19                 35 
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
                 6                 13 
$`17P LOSS MUTATED`
TCGA-F2-6879 TCGA-F2-A44G TCGA-FB-A545 TCGA-HZ-7289 TCGA-HZ-7919 TCGA-HZ-7922 
       10.98         5.03         0.03         7.86         0.66         0.13 
TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8636 TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 
        3.91         0.92         0.16         5.98         1.51        11.41 
TCGA-IB-7652 TCGA-IB-7886 TCGA-IB-7889 TCGA-IB-7893 TCGA-IB-8127 TCGA-IB-A5SP 
       15.65         4.04        15.78         3.85        17.13         9.83 
TCGA-IB-A5SS 
       15.12 

$`17P LOSS WILD-TYPE`
TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44H TCGA-FB-A4P5 TCGA-H6-8124 
        9.96        11.84         7.07         5.19         0.13        12.89 
TCGA-H6-A45N TCGA-HZ-7918 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 
        7.63         0.92         0.26        12.13        12.03         0.26 
TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8638 
        0.62         0.99         0.69         0.49         0.10         2.96 
TCGA-HZ-A49G TCGA-HZ-A49H TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 
        0.76         1.02        49.38         4.77        21.86        15.35 
TCGA-IB-7651 TCGA-IB-7885 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7890 TCGA-IB-7891 
       19.82        27.98         3.58        43.79        19.66        16.04 
TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-A5SO TCGA-IB-A5SQ TCGA-IB-A5ST 
       15.95         0.56        10.82         7.20         0.26 

  17P LOSS MUTATED 17P LOSS WILD-TYPE 
              0.03               0.10 
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
             17.13              49.38 
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
              5.03               7.07 
[1] "0.0 - 17.1 (5.0)" "0.1 - 49.4 (7.1)"
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A545         TCGA-H6-8124 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-H6-A45N         TCGA-HZ-7289         TCGA-HZ-7918 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-HZ-7919         TCGA-HZ-7922         TCGA-HZ-7923 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-HZ-7924         TCGA-HZ-7925         TCGA-HZ-7926 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-HZ-8001         TCGA-HZ-8002         TCGA-HZ-8003 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-HZ-8005         TCGA-HZ-8315         TCGA-HZ-8317 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-HZ-8519         TCGA-HZ-8636         TCGA-HZ-8638 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-HZ-A49G         TCGA-HZ-A49H         TCGA-HZ-A4BH 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-HZ-A4BK         TCGA-IB-7644         TCGA-IB-7645 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-IB-7646         TCGA-IB-7647         TCGA-IB-7649 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-IB-7651         TCGA-IB-7652         TCGA-IB-7885 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-IB-7886         TCGA-IB-7887         TCGA-IB-7888 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-IB-7889         TCGA-IB-7890         TCGA-IB-7891 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-IB-7893         TCGA-IB-7897         TCGA-IB-8126 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-IB-8127         TCGA-IB-A5SO         TCGA-IB-A5SP 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-IB-A5SQ         TCGA-IB-A5SS         TCGA-IB-A5ST 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A545         TCGA-H6-8124 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-H6-A45N         TCGA-HZ-7289         TCGA-HZ-7918 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-HZ-7919         TCGA-HZ-7922         TCGA-HZ-7923 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-HZ-7924         TCGA-HZ-7925         TCGA-HZ-7926 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-HZ-8001         TCGA-HZ-8002         TCGA-HZ-8003 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-HZ-8005         TCGA-HZ-8315         TCGA-HZ-8317 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-HZ-8519         TCGA-HZ-8636         TCGA-HZ-8638 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-HZ-A49G         TCGA-HZ-A49H         TCGA-HZ-A4BH 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-HZ-A4BK         TCGA-IB-7644         TCGA-IB-7645 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-IB-7646         TCGA-IB-7647         TCGA-IB-7649 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-IB-7651         TCGA-IB-7652         TCGA-IB-7885 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-IB-7886         TCGA-IB-7887         TCGA-IB-7888 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-IB-7889         TCGA-IB-7890         TCGA-IB-7891 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-IB-7893         TCGA-IB-7897         TCGA-IB-8126 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-IB-8127         TCGA-IB-A5SO         TCGA-IB-A5SP 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-IB-A5SQ         TCGA-IB-A5SS         TCGA-IB-A5ST 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A545         TCGA-H6-8124 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-H6-A45N         TCGA-HZ-7289         TCGA-HZ-7918 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-HZ-7919         TCGA-HZ-7922         TCGA-HZ-7923 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-HZ-7924         TCGA-HZ-7925         TCGA-HZ-7926 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-HZ-8001         TCGA-HZ-8002         TCGA-HZ-8003 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-HZ-8005         TCGA-HZ-8315         TCGA-HZ-8317 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-HZ-8519         TCGA-HZ-8636         TCGA-HZ-8638 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-HZ-A49G         TCGA-HZ-A49H         TCGA-HZ-A4BH 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-HZ-A4BK         TCGA-IB-7644         TCGA-IB-7645 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-IB-7646         TCGA-IB-7647         TCGA-IB-7649 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-IB-7651         TCGA-IB-7652         TCGA-IB-7885 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-IB-7886         TCGA-IB-7887         TCGA-IB-7888 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-IB-7889         TCGA-IB-7890         TCGA-IB-7891 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-IB-7893         TCGA-IB-7897         TCGA-IB-8126 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-IB-8127         TCGA-IB-A5SO         TCGA-IB-A5SP 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-IB-A5SQ         TCGA-IB-A5SS         TCGA-IB-A5ST 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
[1] "hr=" "1.8"
D52V2, continuous
                    vv
clus                 STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  17P LOSS MUTATED          0        0         3        15         0        2
  17P LOSS WILD-TYPE        2        3         4        26         2        0
D52V3, multiclass
                    vv
clus                 T1+T2 T3+T4
  17P LOSS MUTATED       0    20
  17P LOSS WILD-TYPE     6    31
D52V4, multiclass
       clus
vv      17P LOSS MUTATED 17P LOSS WILD-TYPE
  T1+T2                0                  6
  T3+T4               20                 31
D52V5, binary
                    cls
clus                  0  1
  17P LOSS MUTATED    4 16
  17P LOSS WILD-TYPE 10 27
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17P LOSS MUTATED      4   16
  17P LOSS WILD-TYPE   10   27
   clus
vv  17P LOSS MUTATED 17P LOSS WILD-TYPE
  0                4                 10
  1               16                 27
                    vv
clus                 M0 M1 MX
  17P LOSS MUTATED   11  2  7
  17P LOSS WILD-TYPE 21  0 16
D52V6, multiclass
    clus
vv   17P LOSS MUTATED 17P LOSS WILD-TYPE
  M0               11                 21
  M1                2                  0
  MX                7                 16
D52V7, binary
                    cls
clus                  0  1
  17P LOSS MUTATED   10 10
  17P LOSS WILD-TYPE 21 16
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17P LOSS MUTATED     10   10
  17P LOSS WILD-TYPE   21   16
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  FEMALE               10                 21
  MALE                 10                 16
                    vv
clus                 PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  17P LOSS MUTATED                                    17
  17P LOSS WILD-TYPE                                  34
                    vv
clus                 PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  17P LOSS MUTATED                                       2
  17P LOSS WILD-TYPE                                     2
                    vv
clus                 PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  17P LOSS MUTATED                                                  0
  17P LOSS WILD-TYPE                                                1
D52V8, multiclass
                                                  clus
vv                                                 17P LOSS MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            17
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           2
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                0
                                                  clus
vv                                                 17P LOSS WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                              34
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                             2
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                  1
D52V9, continuous
D52V10, continuous
                    vv
clus                 R0 R1 RX
  17P LOSS MUTATED    5 13  1
  17P LOSS WILD-TYPE 27  8  1
D52V11, multiclass
    clus
vv   17P LOSS MUTATED 17P LOSS WILD-TYPE
  R0                5                 27
  R1               13                  8
  RX                1                  1
D52V12, continuous

Clustering(53) Variable = 17Q LOSS MUTATION ANALYSIS
D53V1, survival
                    sevent
clus2                 0  1
  17Q LOSS MUTATED    7  2
  17Q LOSS WILD-TYPE 28 17
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
                 9                 45 
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
                 2                 17 
$`17Q LOSS MUTATED`
TCGA-F2-6879 TCGA-HZ-7289 TCGA-HZ-7922 TCGA-HZ-8636 TCGA-HZ-A4BH TCGA-HZ-A4BK 
       10.98         7.86         0.13         0.16         5.98         1.51 
TCGA-IB-7652 TCGA-IB-7886 TCGA-IB-A5SP 
       15.65         4.04         9.83 

$`17Q LOSS WILD-TYPE`
TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A4P5 
        9.96        11.84         7.07         5.03         5.19         0.13 
TCGA-FB-A545 TCGA-H6-8124 TCGA-H6-A45N TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7923 
        0.03        12.89         7.63         0.92         0.66         0.26 
TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 
       12.13        12.03         0.26         0.62         0.99         0.69 
TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8638 TCGA-HZ-A49G 
        3.91         0.92         0.49         0.10         2.96         0.76 
TCGA-HZ-A49H TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 
        1.02        11.41        49.38         4.77        21.86        15.35 
TCGA-IB-7651 TCGA-IB-7885 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 
       19.82        27.98         3.58        43.79        15.78        19.66 
TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO 
       16.04         3.85        15.95         0.56        17.13        10.82 
TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST 
        7.20        15.12         0.26 

  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
              0.13               0.03 
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
             15.65              49.38 
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
              5.98               5.19 
[1] "0.1 - 15.7 (6.0)" "0.0 - 49.4 (5.2)"
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A545         TCGA-H6-8124 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-H6-A45N         TCGA-HZ-7289         TCGA-HZ-7918 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-HZ-7919         TCGA-HZ-7922         TCGA-HZ-7923 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-HZ-7924         TCGA-HZ-7925         TCGA-HZ-7926 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-HZ-8001         TCGA-HZ-8002         TCGA-HZ-8003 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-HZ-8005         TCGA-HZ-8315         TCGA-HZ-8317 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-HZ-8519         TCGA-HZ-8636         TCGA-HZ-8638 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-HZ-A49G         TCGA-HZ-A49H         TCGA-HZ-A4BH 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-HZ-A4BK         TCGA-IB-7644         TCGA-IB-7645 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-IB-7646         TCGA-IB-7647         TCGA-IB-7649 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-IB-7651         TCGA-IB-7652         TCGA-IB-7885 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-IB-7886         TCGA-IB-7887         TCGA-IB-7888 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-IB-7889         TCGA-IB-7890         TCGA-IB-7891 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-IB-7893         TCGA-IB-7897         TCGA-IB-8126 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-IB-8127         TCGA-IB-A5SO         TCGA-IB-A5SP 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-IB-A5SQ         TCGA-IB-A5SS         TCGA-IB-A5ST 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A545         TCGA-H6-8124 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-H6-A45N         TCGA-HZ-7289         TCGA-HZ-7918 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-HZ-7919         TCGA-HZ-7922         TCGA-HZ-7923 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-HZ-7924         TCGA-HZ-7925         TCGA-HZ-7926 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-HZ-8001         TCGA-HZ-8002         TCGA-HZ-8003 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-HZ-8005         TCGA-HZ-8315         TCGA-HZ-8317 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-HZ-8519         TCGA-HZ-8636         TCGA-HZ-8638 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-HZ-A49G         TCGA-HZ-A49H         TCGA-HZ-A4BH 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-HZ-A4BK         TCGA-IB-7644         TCGA-IB-7645 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-IB-7646         TCGA-IB-7647         TCGA-IB-7649 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-IB-7651         TCGA-IB-7652         TCGA-IB-7885 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-IB-7886         TCGA-IB-7887         TCGA-IB-7888 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-IB-7889         TCGA-IB-7890         TCGA-IB-7891 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-IB-7893         TCGA-IB-7897         TCGA-IB-8126 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-IB-8127         TCGA-IB-A5SO         TCGA-IB-A5SP 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-IB-A5SQ         TCGA-IB-A5SS         TCGA-IB-A5ST 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A545         TCGA-H6-8124 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-H6-A45N         TCGA-HZ-7289         TCGA-HZ-7918 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-HZ-7919         TCGA-HZ-7922         TCGA-HZ-7923 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-HZ-7924         TCGA-HZ-7925         TCGA-HZ-7926 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-HZ-8001         TCGA-HZ-8002         TCGA-HZ-8003 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-HZ-8005         TCGA-HZ-8315         TCGA-HZ-8317 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-HZ-8519         TCGA-HZ-8636         TCGA-HZ-8638 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-HZ-A49G         TCGA-HZ-A49H         TCGA-HZ-A4BH 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-HZ-A4BK         TCGA-IB-7644         TCGA-IB-7645 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-IB-7646         TCGA-IB-7647         TCGA-IB-7649 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-IB-7651         TCGA-IB-7652         TCGA-IB-7885 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-IB-7886         TCGA-IB-7887         TCGA-IB-7888 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-IB-7889         TCGA-IB-7890         TCGA-IB-7891 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-IB-7893         TCGA-IB-7897         TCGA-IB-8126 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-IB-8127         TCGA-IB-A5SO         TCGA-IB-A5SP 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-IB-A5SQ         TCGA-IB-A5SS         TCGA-IB-A5ST 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D53V2, continuous
                    vv
clus                 STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  17Q LOSS MUTATED          0        0         1         7         0        1
  17Q LOSS WILD-TYPE        2        3         6        34         2        1
D53V3, multiclass
                    vv
clus                 T1+T2 T3+T4
  17Q LOSS MUTATED       0     9
  17Q LOSS WILD-TYPE     6    42
D53V4, multiclass
       clus
vv      17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  T1+T2                0                  6
  T3+T4                9                 42
D53V5, binary
                    cls
clus                  0  1
  17Q LOSS MUTATED    2  7
  17Q LOSS WILD-TYPE 12 36
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17Q LOSS MUTATED      2    7
  17Q LOSS WILD-TYPE   12   36
   clus
vv  17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  0                2                 12
  1                7                 36
                    vv
clus                 M0 M1 MX
  17Q LOSS MUTATED    4  1  4
  17Q LOSS WILD-TYPE 28  1 19
D53V6, multiclass
    clus
vv   17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  M0                4                 28
  M1                1                  1
  MX                4                 19
D53V7, binary
                    cls
clus                  0  1
  17Q LOSS MUTATED    3  6
  17Q LOSS WILD-TYPE 28 20
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17Q LOSS MUTATED      3    6
  17Q LOSS WILD-TYPE   28   20
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  FEMALE                3                 28
  MALE                  6                 20
                    vv
clus                 PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  17Q LOSS MUTATED                                     6
  17Q LOSS WILD-TYPE                                  45
                    vv
clus                 PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  17Q LOSS MUTATED                                       2
  17Q LOSS WILD-TYPE                                     2
                    vv
clus                 PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  17Q LOSS MUTATED                                                  0
  17Q LOSS WILD-TYPE                                                1
D53V8, multiclass
                                                  clus
vv                                                 17Q LOSS MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                             6
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           2
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                0
                                                  clus
vv                                                 17Q LOSS WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                              45
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                             2
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                  1
D53V9, continuous
[1] "Remove cluster labels:" "17Q LOSS MUTATED"      
clus
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
                 1                 13 
        TCGA-F2-6880         TCGA-FB-A4P5         TCGA-H6-8124 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-H6-A45N         TCGA-IB-7644         TCGA-IB-7649 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-IB-7651         TCGA-IB-7885         TCGA-IB-7887 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-IB-7891         TCGA-IB-8126         TCGA-IB-8127 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-IB-A5SS 
"17Q LOSS WILD-TYPE" 
D53V10, continuous
[1] "Remove cluster labels:" "17Q LOSS MUTATED"      
clus
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
                 1                 10 
        TCGA-FB-A4P5         TCGA-H6-8124         TCGA-IB-7644 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-IB-7649         TCGA-IB-7651         TCGA-IB-7885 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-IB-7891         TCGA-IB-8126         TCGA-IB-8127 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-IB-A5SS 
"17Q LOSS WILD-TYPE" 
                    vv
clus                 R0 R1 RX
  17Q LOSS MUTATED    2  6  1
  17Q LOSS WILD-TYPE 30 15  1
D53V11, multiclass
    clus
vv   17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  R0                2                 30
  R1                6                 15
  RX                1                  1
D53V12, continuous

Clustering(54) Variable = 18P LOSS MUTATION ANALYSIS
D54V1, survival
                    sevent
clus2                 0  1
  18P LOSS MUTATED   13  7
  18P LOSS WILD-TYPE 22 12
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
                20                 34 
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
                 7                 12 
$`18P LOSS MUTATED`
TCGA-F2-A44G TCGA-F2-A44H TCGA-H6-A45N TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8315 
        5.03         5.19         7.63         0.26         0.62         0.92 
TCGA-HZ-A49G TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7647 TCGA-IB-7885 
        0.76         5.98         1.51        11.41        21.86        27.98 
TCGA-IB-7886 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-8126 TCGA-IB-A5SO TCGA-IB-A5SP 
        4.04        15.78        19.66         0.56        10.82         9.83 
TCGA-IB-A5SQ TCGA-IB-A5SS 
        7.20        15.12 

$`18P LOSS WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-FB-A4P5 TCGA-FB-A545 
       10.98         9.96        11.84         7.07         0.13         0.03 
TCGA-H6-8124 TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 
       12.89         7.86         0.92         0.66         0.13         0.26 
TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8317 
       12.13        12.03         0.99         0.69         3.91         0.49 
TCGA-HZ-8519 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49H TCGA-IB-7645 TCGA-IB-7646 
        0.10         0.16         2.96         1.02        49.38         4.77 
TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7891 
       15.35        19.82        15.65         3.58        43.79        16.04 
TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8127 TCGA-IB-A5ST 
        3.85        15.95        17.13         0.26 

  18P LOSS MUTATED 18P LOSS WILD-TYPE 
              0.26               0.03 
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
             27.98              49.38 
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
              6.59               4.34 
[1] "0.3 - 28.0 (6.6)" "0.0 - 49.4 (4.3)"
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-FB-A4P5         TCGA-FB-A545         TCGA-H6-8124 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-H6-A45N         TCGA-HZ-7289         TCGA-HZ-7918 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-HZ-7919         TCGA-HZ-7922         TCGA-HZ-7923 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-HZ-7924         TCGA-HZ-7925         TCGA-HZ-7926 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-HZ-8001         TCGA-HZ-8002         TCGA-HZ-8003 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-HZ-8005         TCGA-HZ-8315         TCGA-HZ-8317 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-HZ-8519         TCGA-HZ-8636         TCGA-HZ-8638 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-HZ-A49G         TCGA-HZ-A49H         TCGA-HZ-A4BH 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-HZ-A4BK         TCGA-IB-7644         TCGA-IB-7645 
  "18P LOSS MUTATED"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-IB-7646         TCGA-IB-7647         TCGA-IB-7649 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-IB-7651         TCGA-IB-7652         TCGA-IB-7885 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-IB-7886         TCGA-IB-7887         TCGA-IB-7888 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-IB-7889         TCGA-IB-7890         TCGA-IB-7891 
  "18P LOSS MUTATED"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-IB-7893         TCGA-IB-7897         TCGA-IB-8126 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-IB-8127         TCGA-IB-A5SO         TCGA-IB-A5SP 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-IB-A5SQ         TCGA-IB-A5SS         TCGA-IB-A5ST 
  "18P LOSS MUTATED"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-FB-A4P5         TCGA-FB-A545         TCGA-H6-8124 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-H6-A45N         TCGA-HZ-7289         TCGA-HZ-7918 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-HZ-7919         TCGA-HZ-7922         TCGA-HZ-7923 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-HZ-7924         TCGA-HZ-7925         TCGA-HZ-7926 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-HZ-8001         TCGA-HZ-8002         TCGA-HZ-8003 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-HZ-8005         TCGA-HZ-8315         TCGA-HZ-8317 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-HZ-8519         TCGA-HZ-8636         TCGA-HZ-8638 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-HZ-A49G         TCGA-HZ-A49H         TCGA-HZ-A4BH 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-HZ-A4BK         TCGA-IB-7644         TCGA-IB-7645 
  "18P LOSS MUTATED"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-IB-7646         TCGA-IB-7647         TCGA-IB-7649 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-IB-7651         TCGA-IB-7652         TCGA-IB-7885 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-IB-7886         TCGA-IB-7887         TCGA-IB-7888 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-IB-7889         TCGA-IB-7890         TCGA-IB-7891 
  "18P LOSS MUTATED"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-IB-7893         TCGA-IB-7897         TCGA-IB-8126 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-IB-8127         TCGA-IB-A5SO         TCGA-IB-A5SP 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-IB-A5SQ         TCGA-IB-A5SS         TCGA-IB-A5ST 
  "18P LOSS MUTATED"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-FB-A4P5         TCGA-FB-A545         TCGA-H6-8124 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-H6-A45N         TCGA-HZ-7289         TCGA-HZ-7918 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-HZ-7919         TCGA-HZ-7922         TCGA-HZ-7923 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-HZ-7924         TCGA-HZ-7925         TCGA-HZ-7926 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-HZ-8001         TCGA-HZ-8002         TCGA-HZ-8003 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-HZ-8005         TCGA-HZ-8315         TCGA-HZ-8317 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-HZ-8519         TCGA-HZ-8636         TCGA-HZ-8638 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-HZ-A49G         TCGA-HZ-A49H         TCGA-HZ-A4BH 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-HZ-A4BK         TCGA-IB-7644         TCGA-IB-7645 
  "18P LOSS MUTATED"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-IB-7646         TCGA-IB-7647         TCGA-IB-7649 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-IB-7651         TCGA-IB-7652         TCGA-IB-7885 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-IB-7886         TCGA-IB-7887         TCGA-IB-7888 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-IB-7889         TCGA-IB-7890         TCGA-IB-7891 
  "18P LOSS MUTATED"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-IB-7893         TCGA-IB-7897         TCGA-IB-8126 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-IB-8127         TCGA-IB-A5SO         TCGA-IB-A5SP 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-IB-A5SQ         TCGA-IB-A5SS         TCGA-IB-A5ST 
  "18P LOSS MUTATED"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D54V2, continuous
                    vv
clus                 STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  18P LOSS MUTATED          0        2         3        13         2        1
  18P LOSS WILD-TYPE        2        1         4        28         0        1
D54V3, multiclass
                    vv
clus                 T1+T2 T3+T4
  18P LOSS MUTATED       3    18
  18P LOSS WILD-TYPE     3    33
D54V4, multiclass
       clus
vv      18P LOSS MUTATED 18P LOSS WILD-TYPE
  T1+T2                3                  3
  T3+T4               18                 33
D54V5, binary
                    cls
clus                  0  1
  18P LOSS MUTATED    6 15
  18P LOSS WILD-TYPE  8 28
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18P LOSS MUTATED      6   15
  18P LOSS WILD-TYPE    8   28
   clus
vv  18P LOSS MUTATED 18P LOSS WILD-TYPE
  0                6                  8
  1               15                 28
                    vv
clus                 M0 M1 MX
  18P LOSS MUTATED   12  1  8
  18P LOSS WILD-TYPE 20  1 15
D54V6, multiclass
    clus
vv   18P LOSS MUTATED 18P LOSS WILD-TYPE
  M0               12                 20
  M1                1                  1
  MX                8                 15
D54V7, binary
                    cls
clus                  0  1
  18P LOSS MUTATED   12  9
  18P LOSS WILD-TYPE 19 17
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18P LOSS MUTATED     12    9
  18P LOSS WILD-TYPE   19   17
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  FEMALE               12                 19
  MALE                  9                 17
                    vv
clus                 PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  18P LOSS MUTATED                                    19
  18P LOSS WILD-TYPE                                  32
                    vv
clus                 PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  18P LOSS MUTATED                                       2
  18P LOSS WILD-TYPE                                     2
                    vv
clus                 PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  18P LOSS MUTATED                                                  0
  18P LOSS WILD-TYPE                                                1
D54V8, multiclass
                                                  clus
vv                                                 18P LOSS MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            19
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           2
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                0
                                                  clus
vv                                                 18P LOSS WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                              32
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                             2
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                  1
D54V9, continuous
D54V10, continuous
                    vv
clus                 R0 R1 RX
  18P LOSS MUTATED    9 10  1
  18P LOSS WILD-TYPE 23 11  1
D54V11, multiclass
    clus
vv   18P LOSS MUTATED 18P LOSS WILD-TYPE
  R0                9                 23
  R1               10                 11
  RX                1                  1
D54V12, continuous

Clustering(55) Variable = 18Q LOSS MUTATION ANALYSIS
D55V1, survival
                    sevent
clus2                 0  1
  18Q LOSS MUTATED   20  8
  18Q LOSS WILD-TYPE 15 11
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
                28                 26 
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
                 8                 11 
$`18Q LOSS MUTATED`
TCGA-F2-6879 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A545 TCGA-H6-8124 TCGA-H6-A45N 
       10.98         5.03         5.19         0.03        12.89         7.63 
TCGA-HZ-7919 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8315 TCGA-HZ-8636 
        0.66        12.03         0.26         0.62         0.92         0.16 
TCGA-HZ-A49G TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7647 TCGA-IB-7649 
        0.76         5.98         1.51        11.41        21.86        15.35 
TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-8126 TCGA-IB-8127 
       15.65        27.98        15.78        19.66         0.56        17.13 
TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS 
       10.82         9.83         7.20        15.12 

$`18Q LOSS WILD-TYPE`
TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-FB-A4P5 TCGA-HZ-7289 TCGA-HZ-7918 
        9.96        11.84         7.07         0.13         7.86         0.92 
TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 
        0.13         0.26        12.13         0.99         0.69         3.91 
TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8638 TCGA-HZ-A49H TCGA-IB-7645 TCGA-IB-7646 
        0.49         0.10         2.96         1.02        49.38         4.77 
TCGA-IB-7651 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7891 TCGA-IB-7893 
       19.82         4.04         3.58        43.79        16.04         3.85 
TCGA-IB-7897 TCGA-IB-A5ST 
       15.95         0.26 

  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
              0.03               0.10 
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
             27.98              49.38 
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
              8.73               3.88 
[1] "0.0 - 28.0 (8.7)" "0.1 - 49.4 (3.9)"
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-FB-A4P5         TCGA-FB-A545         TCGA-H6-8124 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-H6-A45N         TCGA-HZ-7289         TCGA-HZ-7918 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-HZ-7919         TCGA-HZ-7922         TCGA-HZ-7923 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-HZ-7924         TCGA-HZ-7925         TCGA-HZ-7926 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-HZ-8001         TCGA-HZ-8002         TCGA-HZ-8003 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-HZ-8005         TCGA-HZ-8315         TCGA-HZ-8317 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-HZ-8519         TCGA-HZ-8636         TCGA-HZ-8638 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-HZ-A49G         TCGA-HZ-A49H         TCGA-HZ-A4BH 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-HZ-A4BK         TCGA-IB-7644         TCGA-IB-7645 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-IB-7646         TCGA-IB-7647         TCGA-IB-7649 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-IB-7651         TCGA-IB-7652         TCGA-IB-7885 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-IB-7886         TCGA-IB-7887         TCGA-IB-7888 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-IB-7889         TCGA-IB-7890         TCGA-IB-7891 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-IB-7893         TCGA-IB-7897         TCGA-IB-8126 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-IB-8127         TCGA-IB-A5SO         TCGA-IB-A5SP 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-IB-A5SQ         TCGA-IB-A5SS         TCGA-IB-A5ST 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-FB-A4P5         TCGA-FB-A545         TCGA-H6-8124 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-H6-A45N         TCGA-HZ-7289         TCGA-HZ-7918 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-HZ-7919         TCGA-HZ-7922         TCGA-HZ-7923 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-HZ-7924         TCGA-HZ-7925         TCGA-HZ-7926 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-HZ-8001         TCGA-HZ-8002         TCGA-HZ-8003 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-HZ-8005         TCGA-HZ-8315         TCGA-HZ-8317 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-HZ-8519         TCGA-HZ-8636         TCGA-HZ-8638 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-HZ-A49G         TCGA-HZ-A49H         TCGA-HZ-A4BH 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-HZ-A4BK         TCGA-IB-7644         TCGA-IB-7645 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-IB-7646         TCGA-IB-7647         TCGA-IB-7649 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-IB-7651         TCGA-IB-7652         TCGA-IB-7885 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-IB-7886         TCGA-IB-7887         TCGA-IB-7888 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-IB-7889         TCGA-IB-7890         TCGA-IB-7891 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-IB-7893         TCGA-IB-7897         TCGA-IB-8126 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-IB-8127         TCGA-IB-A5SO         TCGA-IB-A5SP 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-IB-A5SQ         TCGA-IB-A5SS         TCGA-IB-A5ST 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-FB-A4P5         TCGA-FB-A545         TCGA-H6-8124 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-H6-A45N         TCGA-HZ-7289         TCGA-HZ-7918 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-HZ-7919         TCGA-HZ-7922         TCGA-HZ-7923 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-HZ-7924         TCGA-HZ-7925         TCGA-HZ-7926 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-HZ-8001         TCGA-HZ-8002         TCGA-HZ-8003 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-HZ-8005         TCGA-HZ-8315         TCGA-HZ-8317 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-HZ-8519         TCGA-HZ-8636         TCGA-HZ-8638 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-HZ-A49G         TCGA-HZ-A49H         TCGA-HZ-A4BH 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-HZ-A4BK         TCGA-IB-7644         TCGA-IB-7645 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-IB-7646         TCGA-IB-7647         TCGA-IB-7649 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-IB-7651         TCGA-IB-7652         TCGA-IB-7885 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-IB-7886         TCGA-IB-7887         TCGA-IB-7888 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-IB-7889         TCGA-IB-7890         TCGA-IB-7891 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-IB-7893         TCGA-IB-7897         TCGA-IB-8126 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-IB-8127         TCGA-IB-A5SO         TCGA-IB-A5SP 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-IB-A5SQ         TCGA-IB-A5SS         TCGA-IB-A5ST 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
[1] "hr=" "1.5"
D55V2, continuous
                    vv
clus                 STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  18Q LOSS MUTATED          0        2         3        21         2        2
  18Q LOSS WILD-TYPE        2        1         4        20         0        0
D55V3, multiclass
                    vv
clus                 T1+T2 T3+T4
  18Q LOSS MUTATED       3    27
  18Q LOSS WILD-TYPE     3    24
D55V4, multiclass
       clus
vv      18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  T1+T2                3                  3
  T3+T4               27                 24
D55V5, binary
                    cls
clus                  0  1
  18Q LOSS MUTATED    7 23
  18Q LOSS WILD-TYPE  7 20
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18Q LOSS MUTATED      7   23
  18Q LOSS WILD-TYPE    7   20
   clus
vv  18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  0                7                  7
  1               23                 20
                    vv
clus                 M0 M1 MX
  18Q LOSS MUTATED   18  2 10
  18Q LOSS WILD-TYPE 14  0 13
D55V6, multiclass
    clus
vv   18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  M0               18                 14
  M1                2                  0
  MX               10                 13
D55V7, binary
                    cls
clus                  0  1
  18Q LOSS MUTATED   18 12
  18Q LOSS WILD-TYPE 13 14
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18Q LOSS MUTATED     18   12
  18Q LOSS WILD-TYPE   13   14
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  FEMALE               18                 13
  MALE                 12                 14
                    vv
clus                 PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  18Q LOSS MUTATED                                    27
  18Q LOSS WILD-TYPE                                  24
                    vv
clus                 PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  18Q LOSS MUTATED                                       2
  18Q LOSS WILD-TYPE                                     2
                    vv
clus                 PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  18Q LOSS MUTATED                                                  0
  18Q LOSS WILD-TYPE                                                1
D55V8, multiclass
                                                  clus
vv                                                 18Q LOSS MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            27
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           2
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                0
                                                  clus
vv                                                 18Q LOSS WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                              24
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                             2
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                  1
D55V9, continuous
D55V10, continuous
                    vv
clus                 R0 R1 RX
  18Q LOSS MUTATED   12 15  1
  18Q LOSS WILD-TYPE 20  6  1
D55V11, multiclass
    clus
vv   18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  R0               12                 20
  R1               15                  6
  RX                1                  1
D55V12, continuous

Clustering(56) Variable = 19P LOSS MUTATION ANALYSIS
D56V1, survival
                    sevent
clus2                 0  1
  19P LOSS MUTATED    4  2
  19P LOSS WILD-TYPE 31 17
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
                 6                 48 
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
                 2                 17 
$`19P LOSS MUTATED`
TCGA-H6-8124 TCGA-HZ-7922 TCGA-HZ-8005 TCGA-HZ-8636 TCGA-IB-7646 TCGA-IB-7885 
       12.89         0.13         3.91         0.16         4.77        27.98 

$`19P LOSS WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.96        11.84         7.07         5.03         5.19 
TCGA-FB-A4P5 TCGA-FB-A545 TCGA-H6-A45N TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 
        0.13         0.03         7.63         7.86         0.92         0.66 
TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 
        0.26        12.13        12.03         0.26         0.62         0.99 
TCGA-HZ-8003 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8638 TCGA-HZ-A49G 
        0.69         0.92         0.49         0.10         2.96         0.76 
TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7647 
        1.02         5.98         1.51        11.41        49.38        21.86 
TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 
       15.35        19.82        15.65         4.04         3.58        43.79 
TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 
       15.78        19.66        16.04         3.85        15.95         0.56 
TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST 
       17.13        10.82         9.83         7.20        15.12         0.26 

  19P LOSS MUTATED 19P LOSS WILD-TYPE 
              0.13               0.03 
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
             27.98              49.38 
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
             4.340              6.525 
[1] "0.1 - 28.0 (4.3)" "0.0 - 49.4 (6.5)"
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A545         TCGA-H6-8124 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-H6-A45N         TCGA-HZ-7289         TCGA-HZ-7918 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-HZ-7919         TCGA-HZ-7922         TCGA-HZ-7923 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-HZ-7924         TCGA-HZ-7925         TCGA-HZ-7926 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-HZ-8001         TCGA-HZ-8002         TCGA-HZ-8003 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-HZ-8005         TCGA-HZ-8315         TCGA-HZ-8317 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-HZ-8519         TCGA-HZ-8636         TCGA-HZ-8638 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-HZ-A49G         TCGA-HZ-A49H         TCGA-HZ-A4BH 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-HZ-A4BK         TCGA-IB-7644         TCGA-IB-7645 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-IB-7646         TCGA-IB-7647         TCGA-IB-7649 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-IB-7651         TCGA-IB-7652         TCGA-IB-7885 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-IB-7886         TCGA-IB-7887         TCGA-IB-7888 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-IB-7889         TCGA-IB-7890         TCGA-IB-7891 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-IB-7893         TCGA-IB-7897         TCGA-IB-8126 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-IB-8127         TCGA-IB-A5SO         TCGA-IB-A5SP 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-IB-A5SQ         TCGA-IB-A5SS         TCGA-IB-A5ST 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A545         TCGA-H6-8124 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-H6-A45N         TCGA-HZ-7289         TCGA-HZ-7918 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-HZ-7919         TCGA-HZ-7922         TCGA-HZ-7923 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-HZ-7924         TCGA-HZ-7925         TCGA-HZ-7926 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-HZ-8001         TCGA-HZ-8002         TCGA-HZ-8003 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-HZ-8005         TCGA-HZ-8315         TCGA-HZ-8317 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-HZ-8519         TCGA-HZ-8636         TCGA-HZ-8638 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-HZ-A49G         TCGA-HZ-A49H         TCGA-HZ-A4BH 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-HZ-A4BK         TCGA-IB-7644         TCGA-IB-7645 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-IB-7646         TCGA-IB-7647         TCGA-IB-7649 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-IB-7651         TCGA-IB-7652         TCGA-IB-7885 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-IB-7886         TCGA-IB-7887         TCGA-IB-7888 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-IB-7889         TCGA-IB-7890         TCGA-IB-7891 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-IB-7893         TCGA-IB-7897         TCGA-IB-8126 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-IB-8127         TCGA-IB-A5SO         TCGA-IB-A5SP 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-IB-A5SQ         TCGA-IB-A5SS         TCGA-IB-A5ST 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A545         TCGA-H6-8124 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-H6-A45N         TCGA-HZ-7289         TCGA-HZ-7918 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-HZ-7919         TCGA-HZ-7922         TCGA-HZ-7923 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-HZ-7924         TCGA-HZ-7925         TCGA-HZ-7926 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-HZ-8001         TCGA-HZ-8002         TCGA-HZ-8003 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-HZ-8005         TCGA-HZ-8315         TCGA-HZ-8317 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-HZ-8519         TCGA-HZ-8636         TCGA-HZ-8638 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-HZ-A49G         TCGA-HZ-A49H         TCGA-HZ-A4BH 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-HZ-A4BK         TCGA-IB-7644         TCGA-IB-7645 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-IB-7646         TCGA-IB-7647         TCGA-IB-7649 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-IB-7651         TCGA-IB-7652         TCGA-IB-7885 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-IB-7886         TCGA-IB-7887         TCGA-IB-7888 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-IB-7889         TCGA-IB-7890         TCGA-IB-7891 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-IB-7893         TCGA-IB-7897         TCGA-IB-8126 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-IB-8127         TCGA-IB-A5SO         TCGA-IB-A5SP 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-IB-A5SQ         TCGA-IB-A5SS         TCGA-IB-A5ST 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
[1] "hr=" "1"  
D56V2, continuous
                    vv
clus                 STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  19P LOSS MUTATED          0        0         0         5         0        1
  19P LOSS WILD-TYPE        2        3         7        36         2        1
D56V3, multiclass
                    vv
clus                 T1+T2 T3+T4
  19P LOSS MUTATED       0     6
  19P LOSS WILD-TYPE     6    45
D56V4, multiclass
       clus
vv      19P LOSS MUTATED 19P LOSS WILD-TYPE
  T1+T2                0                  6
  T3+T4                6                 45
D56V5, binary
                    cls
clus                  0  1
  19P LOSS MUTATED    1  5
  19P LOSS WILD-TYPE 13 38
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19P LOSS MUTATED      1    5
  19P LOSS WILD-TYPE   13   38
   clus
vv  19P LOSS MUTATED 19P LOSS WILD-TYPE
  0                1                 13
  1                5                 38
                    vv
clus                 M0 M1 MX
  19P LOSS MUTATED    3  1  2
  19P LOSS WILD-TYPE 29  1 21
D56V6, multiclass
    clus
vv   19P LOSS MUTATED 19P LOSS WILD-TYPE
  M0                3                 29
  M1                1                  1
  MX                2                 21
D56V7, binary
                    cls
clus                  0  1
  19P LOSS MUTATED    4  2
  19P LOSS WILD-TYPE 27 24
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19P LOSS MUTATED      4    2
  19P LOSS WILD-TYPE   27   24
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  FEMALE                4                 27
  MALE                  2                 24
                    vv
clus                 PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  19P LOSS MUTATED                                     6
  19P LOSS WILD-TYPE                                  45
                    vv
clus                 PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  19P LOSS MUTATED                                       0
  19P LOSS WILD-TYPE                                     4
                    vv
clus                 PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  19P LOSS MUTATED                                                  0
  19P LOSS WILD-TYPE                                                1
D56V8, multiclass
                                                  clus
vv                                                 19P LOSS MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                             6
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                0
                                                  clus
vv                                                 19P LOSS WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                              45
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                             4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                  1
D56V9, continuous
[1] "Remove cluster labels:" "19P LOSS MUTATED"      
clus
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
                 2                 12 
        TCGA-F2-6880         TCGA-FB-A4P5         TCGA-H6-A45N 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-IB-7644         TCGA-IB-7649         TCGA-IB-7651 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-IB-7886         TCGA-IB-7887         TCGA-IB-7891 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-IB-8126         TCGA-IB-8127         TCGA-IB-A5SS 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
D56V10, continuous
[1] "Remove cluster labels:" "19P LOSS MUTATED"      
clus
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
                 2                  9 
        TCGA-FB-A4P5         TCGA-IB-7644         TCGA-IB-7649 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-IB-7651         TCGA-IB-7886         TCGA-IB-7891 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-IB-8126         TCGA-IB-8127         TCGA-IB-A5SS 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
                    vv
clus                 R0 R1 RX
  19P LOSS MUTATED    3  3  0
  19P LOSS WILD-TYPE 29 18  2
D56V11, multiclass
    clus
vv   19P LOSS MUTATED 19P LOSS WILD-TYPE
  R0                3                 29
  R1                3                 18
  RX                0                  2
D56V12, continuous

Clustering(57) Variable = 19Q LOSS MUTATION ANALYSIS
D57V1, survival
                    sevent
clus2                 0  1
  19Q LOSS MUTATED    3  2
  19Q LOSS WILD-TYPE 32 17
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                 5                 49 
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                 2                 17 
$`19Q LOSS MUTATED`
TCGA-H6-8124 TCGA-HZ-8005 TCGA-HZ-8636 TCGA-IB-7646 TCGA-IB-7885 
       12.89         3.91         0.16         4.77        27.98 

$`19Q LOSS WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.96        11.84         7.07         5.03         5.19 
TCGA-FB-A4P5 TCGA-FB-A545 TCGA-H6-A45N TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 
        0.13         0.03         7.63         7.86         0.92         0.66 
TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 
        0.13         0.26        12.13        12.03         0.26         0.62 
TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8638 
        0.99         0.69         0.92         0.49         0.10         2.96 
TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 
        0.76         1.02         5.98         1.51        11.41        49.38 
TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7886 TCGA-IB-7887 
       21.86        15.35        19.82        15.65         4.04         3.58 
TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 
       43.79        15.78        19.66        16.04         3.85        15.95 
TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS 
        0.56        17.13        10.82         9.83         7.20        15.12 
TCGA-IB-A5ST 
        0.26 

  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
              0.16               0.03 
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
             27.98              49.38 
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
              4.77               5.98 
[1] "0.2 - 28.0 (4.8)" "0.0 - 49.4 (6.0)"
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A545         TCGA-H6-8124 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-H6-A45N         TCGA-HZ-7289         TCGA-HZ-7918 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-HZ-7919         TCGA-HZ-7922         TCGA-HZ-7923 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-HZ-7924         TCGA-HZ-7925         TCGA-HZ-7926 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-HZ-8001         TCGA-HZ-8002         TCGA-HZ-8003 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-HZ-8005         TCGA-HZ-8315         TCGA-HZ-8317 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-HZ-8519         TCGA-HZ-8636         TCGA-HZ-8638 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-HZ-A49G         TCGA-HZ-A49H         TCGA-HZ-A4BH 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-HZ-A4BK         TCGA-IB-7644         TCGA-IB-7645 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-IB-7646         TCGA-IB-7647         TCGA-IB-7649 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-IB-7651         TCGA-IB-7652         TCGA-IB-7885 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-IB-7886         TCGA-IB-7887         TCGA-IB-7888 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-IB-7889         TCGA-IB-7890         TCGA-IB-7891 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-IB-7893         TCGA-IB-7897         TCGA-IB-8126 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-IB-8127         TCGA-IB-A5SO         TCGA-IB-A5SP 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-IB-A5SQ         TCGA-IB-A5SS         TCGA-IB-A5ST 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A545         TCGA-H6-8124 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-H6-A45N         TCGA-HZ-7289         TCGA-HZ-7918 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-HZ-7919         TCGA-HZ-7922         TCGA-HZ-7923 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-HZ-7924         TCGA-HZ-7925         TCGA-HZ-7926 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-HZ-8001         TCGA-HZ-8002         TCGA-HZ-8003 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-HZ-8005         TCGA-HZ-8315         TCGA-HZ-8317 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-HZ-8519         TCGA-HZ-8636         TCGA-HZ-8638 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-HZ-A49G         TCGA-HZ-A49H         TCGA-HZ-A4BH 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-HZ-A4BK         TCGA-IB-7644         TCGA-IB-7645 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-IB-7646         TCGA-IB-7647         TCGA-IB-7649 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-IB-7651         TCGA-IB-7652         TCGA-IB-7885 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-IB-7886         TCGA-IB-7887         TCGA-IB-7888 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-IB-7889         TCGA-IB-7890         TCGA-IB-7891 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-IB-7893         TCGA-IB-7897         TCGA-IB-8126 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-IB-8127         TCGA-IB-A5SO         TCGA-IB-A5SP 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-IB-A5SQ         TCGA-IB-A5SS         TCGA-IB-A5ST 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A545         TCGA-H6-8124 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-H6-A45N         TCGA-HZ-7289         TCGA-HZ-7918 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-HZ-7919         TCGA-HZ-7922         TCGA-HZ-7923 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-HZ-7924         TCGA-HZ-7925         TCGA-HZ-7926 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-HZ-8001         TCGA-HZ-8002         TCGA-HZ-8003 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-HZ-8005         TCGA-HZ-8315         TCGA-HZ-8317 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-HZ-8519         TCGA-HZ-8636         TCGA-HZ-8638 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-HZ-A49G         TCGA-HZ-A49H         TCGA-HZ-A4BH 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-HZ-A4BK         TCGA-IB-7644         TCGA-IB-7645 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-IB-7646         TCGA-IB-7647         TCGA-IB-7649 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-IB-7651         TCGA-IB-7652         TCGA-IB-7885 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-IB-7886         TCGA-IB-7887         TCGA-IB-7888 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-IB-7889         TCGA-IB-7890         TCGA-IB-7891 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-IB-7893         TCGA-IB-7897         TCGA-IB-8126 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-IB-8127         TCGA-IB-A5SO         TCGA-IB-A5SP 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-IB-A5SQ         TCGA-IB-A5SS         TCGA-IB-A5ST 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
[1] "hr=" "1"  
D57V2, continuous
                    vv
clus                 STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  19Q LOSS MUTATED          0        0         0         4         0        1
  19Q LOSS WILD-TYPE        2        3         7        37         2        1
D57V3, multiclass
                    vv
clus                 T1+T2 T3+T4
  19Q LOSS MUTATED       0     5
  19Q LOSS WILD-TYPE     6    46
D57V4, multiclass
       clus
vv      19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  T1+T2                0                  6
  T3+T4                5                 46
D57V5, binary
                    cls
clus                  0  1
  19Q LOSS MUTATED    1  4
  19Q LOSS WILD-TYPE 13 39
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19Q LOSS MUTATED      1    4
  19Q LOSS WILD-TYPE   13   39
   clus
vv  19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  0                1                 13
  1                4                 39
                    vv
clus                 M0 M1 MX
  19Q LOSS MUTATED    3  1  1
  19Q LOSS WILD-TYPE 29  1 22
D57V6, multiclass
    clus
vv   19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  M0                3                 29
  M1                1                  1
  MX                1                 22
D57V7, binary
                    cls
clus                  0  1
  19Q LOSS MUTATED    3  2
  19Q LOSS WILD-TYPE 28 24
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19Q LOSS MUTATED      3    2
  19Q LOSS WILD-TYPE   28   24
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  FEMALE                3                 28
  MALE                  2                 24
                    vv
clus                 PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  19Q LOSS MUTATED                                     5
  19Q LOSS WILD-TYPE                                  46
                    vv
clus                 PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  19Q LOSS MUTATED                                       0
  19Q LOSS WILD-TYPE                                     4
                    vv
clus                 PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  19Q LOSS MUTATED                                                  0
  19Q LOSS WILD-TYPE                                                1
D57V8, multiclass
                                                  clus
vv                                                 19Q LOSS MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                             5
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                0
                                                  clus
vv                                                 19Q LOSS WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                              46
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                             4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                  1
D57V9, continuous
[1] "Remove cluster labels:" "19Q LOSS MUTATED"      
clus
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                 2                 12 
        TCGA-F2-6880         TCGA-FB-A4P5         TCGA-H6-A45N 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-IB-7644         TCGA-IB-7649         TCGA-IB-7651 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-IB-7886         TCGA-IB-7887         TCGA-IB-7891 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-IB-8126         TCGA-IB-8127         TCGA-IB-A5SS 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
D57V10, continuous
[1] "Remove cluster labels:" "19Q LOSS MUTATED"      
clus
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                 2                  9 
        TCGA-FB-A4P5         TCGA-IB-7644         TCGA-IB-7649 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-IB-7651         TCGA-IB-7886         TCGA-IB-7891 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-IB-8126         TCGA-IB-8127         TCGA-IB-A5SS 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
                    vv
clus                 R0 R1 RX
  19Q LOSS MUTATED    2  3  0
  19Q LOSS WILD-TYPE 30 18  2
D57V11, multiclass
    clus
vv   19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  R0                2                 30
  R1                3                 18
  RX                0                  2
D57V12, continuous

Clustering(58) Variable = 20P LOSS MUTATION ANALYSIS
D58V1, survival
                    sevent
clus2                 0  1
  20P LOSS MUTATED    2  1
  20P LOSS WILD-TYPE 33 18
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                 3                 51 
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                 1                 18 
$`20P LOSS MUTATED`
TCGA-HZ-A49G TCGA-HZ-A4BK TCGA-IB-7887 
        0.76         1.51         3.58 

$`20P LOSS WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.96        11.84         7.07         5.03         5.19 
TCGA-FB-A4P5 TCGA-FB-A545 TCGA-H6-8124 TCGA-H6-A45N TCGA-HZ-7289 TCGA-HZ-7918 
        0.13         0.03        12.89         7.63         7.86         0.92 
TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 
        0.66         0.13         0.26        12.13        12.03         0.26 
TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 
        0.62         0.99         0.69         3.91         0.92         0.49 
TCGA-HZ-8519 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-IB-7644 
        0.10         0.16         2.96         1.02         5.98        11.41 
TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 
       49.38         4.77        21.86        15.35        19.82        15.65 
TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 
       27.98         4.04        43.79        15.78        19.66        16.04 
TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP 
        3.85        15.95         0.56        17.13        10.82         9.83 
TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST 
        7.20        15.12         0.26 

  20P LOSS MUTATED 20P LOSS WILD-TYPE 
              0.76               0.03 
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
              3.58              49.38 
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
              1.51               7.07 
[1] "0.8 - 3.6 (1.5)"  "0.0 - 49.4 (7.1)"
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A545         TCGA-H6-8124 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-H6-A45N         TCGA-HZ-7289         TCGA-HZ-7918 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-HZ-7919         TCGA-HZ-7922         TCGA-HZ-7923 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-HZ-7924         TCGA-HZ-7925         TCGA-HZ-7926 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-HZ-8001         TCGA-HZ-8002         TCGA-HZ-8003 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-HZ-8005         TCGA-HZ-8315         TCGA-HZ-8317 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-HZ-8519         TCGA-HZ-8636         TCGA-HZ-8638 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-HZ-A49G         TCGA-HZ-A49H         TCGA-HZ-A4BH 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-HZ-A4BK         TCGA-IB-7644         TCGA-IB-7645 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-IB-7646         TCGA-IB-7647         TCGA-IB-7649 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-IB-7651         TCGA-IB-7652         TCGA-IB-7885 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-IB-7886         TCGA-IB-7887         TCGA-IB-7888 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-IB-7889         TCGA-IB-7890         TCGA-IB-7891 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-IB-7893         TCGA-IB-7897         TCGA-IB-8126 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-IB-8127         TCGA-IB-A5SO         TCGA-IB-A5SP 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-IB-A5SQ         TCGA-IB-A5SS         TCGA-IB-A5ST 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A545         TCGA-H6-8124 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-H6-A45N         TCGA-HZ-7289         TCGA-HZ-7918 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-HZ-7919         TCGA-HZ-7922         TCGA-HZ-7923 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-HZ-7924         TCGA-HZ-7925         TCGA-HZ-7926 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-HZ-8001         TCGA-HZ-8002         TCGA-HZ-8003 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-HZ-8005         TCGA-HZ-8315         TCGA-HZ-8317 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-HZ-8519         TCGA-HZ-8636         TCGA-HZ-8638 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-HZ-A49G         TCGA-HZ-A49H         TCGA-HZ-A4BH 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-HZ-A4BK         TCGA-IB-7644         TCGA-IB-7645 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-IB-7646         TCGA-IB-7647         TCGA-IB-7649 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-IB-7651         TCGA-IB-7652         TCGA-IB-7885 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-IB-7886         TCGA-IB-7887         TCGA-IB-7888 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-IB-7889         TCGA-IB-7890         TCGA-IB-7891 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-IB-7893         TCGA-IB-7897         TCGA-IB-8126 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-IB-8127         TCGA-IB-A5SO         TCGA-IB-A5SP 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-IB-A5SQ         TCGA-IB-A5SS         TCGA-IB-A5ST 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A545         TCGA-H6-8124 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-H6-A45N         TCGA-HZ-7289         TCGA-HZ-7918 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-HZ-7919         TCGA-HZ-7922         TCGA-HZ-7923 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-HZ-7924         TCGA-HZ-7925         TCGA-HZ-7926 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-HZ-8001         TCGA-HZ-8002         TCGA-HZ-8003 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-HZ-8005         TCGA-HZ-8315         TCGA-HZ-8317 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-HZ-8519         TCGA-HZ-8636         TCGA-HZ-8638 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-HZ-A49G         TCGA-HZ-A49H         TCGA-HZ-A4BH 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-HZ-A4BK         TCGA-IB-7644         TCGA-IB-7645 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-IB-7646         TCGA-IB-7647         TCGA-IB-7649 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-IB-7651         TCGA-IB-7652         TCGA-IB-7885 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-IB-7886         TCGA-IB-7887         TCGA-IB-7888 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-IB-7889         TCGA-IB-7890         TCGA-IB-7891 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-IB-7893         TCGA-IB-7897         TCGA-IB-8126 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-IB-8127         TCGA-IB-A5SO         TCGA-IB-A5SP 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-IB-A5SQ         TCGA-IB-A5SS         TCGA-IB-A5ST 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
[1] "hr="     "1.6e+15"
D58V2, continuous
                    vv
clus                 STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  20P LOSS MUTATED          0        0         0         4         0        0
  20P LOSS WILD-TYPE        2        3         7        37         2        2
D58V3, multiclass
                    vv
clus                 T1+T2 T3+T4
  20P LOSS MUTATED       1     3
  20P LOSS WILD-TYPE     5    48
D58V4, multiclass
       clus
vv      20P LOSS MUTATED 20P LOSS WILD-TYPE
  T1+T2                1                  5
  T3+T4                3                 48
D58V5, binary
                    cls
clus                  0  1
  20P LOSS MUTATED    0  4
  20P LOSS WILD-TYPE 14 39
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20P LOSS MUTATED      0    4
  20P LOSS WILD-TYPE   14   39
   clus
vv  20P LOSS MUTATED 20P LOSS WILD-TYPE
  0                0                 14
  1                4                 39
                    vv
clus                 M0 M1 MX
  20P LOSS MUTATED    1  0  3
  20P LOSS WILD-TYPE 31  2 20
D58V6, multiclass
    clus
vv   20P LOSS MUTATED 20P LOSS WILD-TYPE
  M0                1                 31
  M1                0                  2
  MX                3                 20
D58V7, binary
                    cls
clus                  0  1
  20P LOSS MUTATED    2  2
  20P LOSS WILD-TYPE 29 24
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20P LOSS MUTATED      2    2
  20P LOSS WILD-TYPE   29   24
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  FEMALE                2                 29
  MALE                  2                 24
                    vv
clus                 PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  20P LOSS MUTATED                                     3
  20P LOSS WILD-TYPE                                  48
                    vv
clus                 PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  20P LOSS MUTATED                                       1
  20P LOSS WILD-TYPE                                     3
                    vv
clus                 PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  20P LOSS MUTATED                                                  0
  20P LOSS WILD-TYPE                                                1
D58V8, multiclass
                                                  clus
vv                                                 20P LOSS MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                             3
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                0
                                                  clus
vv                                                 20P LOSS WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                              48
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                             3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                  1
D58V9, continuous
[1] "Remove cluster labels:" "20P LOSS MUTATED"      
clus
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                 1                 13 
        TCGA-F2-6880         TCGA-FB-A4P5         TCGA-H6-8124 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-H6-A45N         TCGA-IB-7644         TCGA-IB-7649 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-IB-7651         TCGA-IB-7885         TCGA-IB-7886 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-IB-7891         TCGA-IB-8126         TCGA-IB-8127 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-IB-A5SS 
"20P LOSS WILD-TYPE" 
D58V10, continuous
                    vv
clus                 R0 R1 RX
  20P LOSS MUTATED    0  4  0
  20P LOSS WILD-TYPE 32 17  2
D58V11, multiclass
    clus
vv   20P LOSS MUTATED 20P LOSS WILD-TYPE
  R0                0                 32
  R1                4                 17
  RX                0                  2
D58V12, continuous

Clustering(59) Variable = 21Q LOSS MUTATION ANALYSIS
D59V1, survival
                    sevent
clus2                 0  1
  21Q LOSS MUTATED   11  7
  21Q LOSS WILD-TYPE 24 12
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
                18                 36 
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
                 7                 12 
$`21Q LOSS MUTATED`
TCGA-FB-A545 TCGA-H6-8124 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-8005 
        0.03        12.89         0.92         0.66         0.13         3.91 
TCGA-HZ-8636 TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7646 TCGA-IB-7649 
        0.16         5.98         1.51        11.41         4.77        15.35 
TCGA-IB-7651 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-A5SP TCGA-IB-A5SS 
       19.82        27.98         4.04         3.58         9.83        15.12 

$`21Q LOSS WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.96        11.84         7.07         5.03         5.19 
TCGA-FB-A4P5 TCGA-H6-A45N TCGA-HZ-7289 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
        0.13         7.63         7.86         0.26        12.13        12.03 
TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8315 TCGA-HZ-8317 
        0.26         0.62         0.99         0.69         0.92         0.49 
TCGA-HZ-8519 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-IB-7645 TCGA-IB-7647 
        0.10         2.96         0.76         1.02        49.38        21.86 
TCGA-IB-7652 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 
       15.65        43.79        15.78        19.66        16.04         3.85 
TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SQ TCGA-IB-A5ST 
       15.95         0.56        17.13        10.82         7.20         0.26 

  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
              0.03               0.10 
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
             27.98              49.38 
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
             4.405              7.135 
[1] "0.0 - 28.0 (4.4)" "0.1 - 49.4 (7.1)"
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A545         TCGA-H6-8124 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-H6-A45N         TCGA-HZ-7289         TCGA-HZ-7918 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-HZ-7919         TCGA-HZ-7922         TCGA-HZ-7923 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-HZ-7924         TCGA-HZ-7925         TCGA-HZ-7926 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-HZ-8001         TCGA-HZ-8002         TCGA-HZ-8003 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-HZ-8005         TCGA-HZ-8315         TCGA-HZ-8317 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-HZ-8519         TCGA-HZ-8636         TCGA-HZ-8638 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-HZ-A49G         TCGA-HZ-A49H         TCGA-HZ-A4BH 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-HZ-A4BK         TCGA-IB-7644         TCGA-IB-7645 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-IB-7646         TCGA-IB-7647         TCGA-IB-7649 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-IB-7651         TCGA-IB-7652         TCGA-IB-7885 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-IB-7886         TCGA-IB-7887         TCGA-IB-7888 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-IB-7889         TCGA-IB-7890         TCGA-IB-7891 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-IB-7893         TCGA-IB-7897         TCGA-IB-8126 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-IB-8127         TCGA-IB-A5SO         TCGA-IB-A5SP 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-IB-A5SQ         TCGA-IB-A5SS         TCGA-IB-A5ST 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A545         TCGA-H6-8124 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-H6-A45N         TCGA-HZ-7289         TCGA-HZ-7918 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-HZ-7919         TCGA-HZ-7922         TCGA-HZ-7923 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-HZ-7924         TCGA-HZ-7925         TCGA-HZ-7926 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-HZ-8001         TCGA-HZ-8002         TCGA-HZ-8003 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-HZ-8005         TCGA-HZ-8315         TCGA-HZ-8317 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-HZ-8519         TCGA-HZ-8636         TCGA-HZ-8638 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-HZ-A49G         TCGA-HZ-A49H         TCGA-HZ-A4BH 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-HZ-A4BK         TCGA-IB-7644         TCGA-IB-7645 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-IB-7646         TCGA-IB-7647         TCGA-IB-7649 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-IB-7651         TCGA-IB-7652         TCGA-IB-7885 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-IB-7886         TCGA-IB-7887         TCGA-IB-7888 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-IB-7889         TCGA-IB-7890         TCGA-IB-7891 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-IB-7893         TCGA-IB-7897         TCGA-IB-8126 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-IB-8127         TCGA-IB-A5SO         TCGA-IB-A5SP 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-IB-A5SQ         TCGA-IB-A5SS         TCGA-IB-A5ST 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A545         TCGA-H6-8124 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-H6-A45N         TCGA-HZ-7289         TCGA-HZ-7918 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-HZ-7919         TCGA-HZ-7922         TCGA-HZ-7923 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-HZ-7924         TCGA-HZ-7925         TCGA-HZ-7926 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-HZ-8001         TCGA-HZ-8002         TCGA-HZ-8003 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-HZ-8005         TCGA-HZ-8315         TCGA-HZ-8317 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-HZ-8519         TCGA-HZ-8636         TCGA-HZ-8638 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-HZ-A49G         TCGA-HZ-A49H         TCGA-HZ-A4BH 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-HZ-A4BK         TCGA-IB-7644         TCGA-IB-7645 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-IB-7646         TCGA-IB-7647         TCGA-IB-7649 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-IB-7651         TCGA-IB-7652         TCGA-IB-7885 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-IB-7886         TCGA-IB-7887         TCGA-IB-7888 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-IB-7889         TCGA-IB-7890         TCGA-IB-7891 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-IB-7893         TCGA-IB-7897         TCGA-IB-8126 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-IB-8127         TCGA-IB-A5SO         TCGA-IB-A5SP 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-IB-A5SQ         TCGA-IB-A5SS         TCGA-IB-A5ST 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
[1] "hr=" "1.7"
D59V2, continuous
                    vv
clus                 STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  21Q LOSS MUTATED          0        0         1        16         0        2
  21Q LOSS WILD-TYPE        2        3         6        25         2        0
D59V3, multiclass
                    vv
clus                 T1+T2 T3+T4
  21Q LOSS MUTATED       0    19
  21Q LOSS WILD-TYPE     6    32
D59V4, multiclass
       clus
vv      21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  T1+T2                0                  6
  T3+T4               19                 32
D59V5, binary
                    cls
clus                  0  1
  21Q LOSS MUTATED    2 17
  21Q LOSS WILD-TYPE 12 26
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  21Q LOSS MUTATED      2   17
  21Q LOSS WILD-TYPE   12   26
   clus
vv  21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  0                2                 12
  1               17                 26
                    vv
clus                 M0 M1 MX
  21Q LOSS MUTATED   12  2  5
  21Q LOSS WILD-TYPE 20  0 18
D59V6, multiclass
    clus
vv   21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  M0               12                 20
  M1                2                  0
  MX                5                 18
D59V7, binary
                    cls
clus                  0  1
  21Q LOSS MUTATED   12  7
  21Q LOSS WILD-TYPE 19 19
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  21Q LOSS MUTATED     12    7
  21Q LOSS WILD-TYPE   19   19
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  FEMALE               12                 19
  MALE                  7                 19
                    vv
clus                 PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  21Q LOSS MUTATED                                    18
  21Q LOSS WILD-TYPE                                  33
                    vv
clus                 PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  21Q LOSS MUTATED                                       1
  21Q LOSS WILD-TYPE                                     3
                    vv
clus                 PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  21Q LOSS MUTATED                                                  0
  21Q LOSS WILD-TYPE                                                1
D59V8, multiclass
                                                  clus
vv                                                 21Q LOSS MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            18
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                0
                                                  clus
vv                                                 21Q LOSS WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                              33
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                             3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                  1
D59V9, continuous
D59V10, continuous
                    vv
clus                 R0 R1 RX
  21Q LOSS MUTATED    7 11  0
  21Q LOSS WILD-TYPE 25 10  2
D59V11, multiclass
    clus
vv   21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  R0                7                 25
  R1               11                 10
  RX                0                  2
D59V12, continuous

Clustering(60) Variable = 22Q LOSS MUTATION ANALYSIS
D60V1, survival
                    sevent
clus2                 0  1
  22Q LOSS MUTATED    6  3
  22Q LOSS WILD-TYPE 29 16
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
                 9                 45 
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
                 3                 16 
$`22Q LOSS MUTATED`
TCGA-F2-6879 TCGA-F2-A44H TCGA-HZ-8636 TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7646 
       10.98         5.19         0.16         5.98         1.51         4.77 
TCGA-IB-7886 TCGA-IB-8127 TCGA-IB-A5SP 
        4.04        17.13         9.83 

$`22Q LOSS WILD-TYPE`
TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-FB-A4P5 TCGA-FB-A545 
        9.96        11.84         7.07         5.03         0.13         0.03 
TCGA-H6-8124 TCGA-H6-A45N TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 
       12.89         7.63         7.86         0.92         0.66         0.13 
TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 
        0.26        12.13        12.03         0.26         0.62         0.99 
TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8638 
        0.69         3.91         0.92         0.49         0.10         2.96 
TCGA-HZ-A49G TCGA-HZ-A49H TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7647 TCGA-IB-7649 
        0.76         1.02        11.41        49.38        21.86        15.35 
TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 
       19.82        15.65        27.98         3.58        43.79        15.78 
TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-A5SO 
       19.66        16.04         3.85        15.95         0.56        10.82 
TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST 
        7.20        15.12         0.26 

  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
              0.16               0.03 
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
             17.13              49.38 
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
              5.19               7.07 
[1] "0.2 - 17.1 (5.2)" "0.0 - 49.4 (7.1)"
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-FB-A4P5         TCGA-FB-A545         TCGA-H6-8124 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-H6-A45N         TCGA-HZ-7289         TCGA-HZ-7918 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-HZ-7919         TCGA-HZ-7922         TCGA-HZ-7923 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-HZ-7924         TCGA-HZ-7925         TCGA-HZ-7926 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-HZ-8001         TCGA-HZ-8002         TCGA-HZ-8003 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-HZ-8005         TCGA-HZ-8315         TCGA-HZ-8317 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-HZ-8519         TCGA-HZ-8636         TCGA-HZ-8638 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-HZ-A49G         TCGA-HZ-A49H         TCGA-HZ-A4BH 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-HZ-A4BK         TCGA-IB-7644         TCGA-IB-7645 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-IB-7646         TCGA-IB-7647         TCGA-IB-7649 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-IB-7651         TCGA-IB-7652         TCGA-IB-7885 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-IB-7886         TCGA-IB-7887         TCGA-IB-7888 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-IB-7889         TCGA-IB-7890         TCGA-IB-7891 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-IB-7893         TCGA-IB-7897         TCGA-IB-8126 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-IB-8127         TCGA-IB-A5SO         TCGA-IB-A5SP 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-IB-A5SQ         TCGA-IB-A5SS         TCGA-IB-A5ST 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-FB-A4P5         TCGA-FB-A545         TCGA-H6-8124 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-H6-A45N         TCGA-HZ-7289         TCGA-HZ-7918 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-HZ-7919         TCGA-HZ-7922         TCGA-HZ-7923 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-HZ-7924         TCGA-HZ-7925         TCGA-HZ-7926 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-HZ-8001         TCGA-HZ-8002         TCGA-HZ-8003 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-HZ-8005         TCGA-HZ-8315         TCGA-HZ-8317 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-HZ-8519         TCGA-HZ-8636         TCGA-HZ-8638 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-HZ-A49G         TCGA-HZ-A49H         TCGA-HZ-A4BH 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-HZ-A4BK         TCGA-IB-7644         TCGA-IB-7645 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-IB-7646         TCGA-IB-7647         TCGA-IB-7649 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-IB-7651         TCGA-IB-7652         TCGA-IB-7885 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-IB-7886         TCGA-IB-7887         TCGA-IB-7888 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-IB-7889         TCGA-IB-7890         TCGA-IB-7891 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-IB-7893         TCGA-IB-7897         TCGA-IB-8126 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-IB-8127         TCGA-IB-A5SO         TCGA-IB-A5SP 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-IB-A5SQ         TCGA-IB-A5SS         TCGA-IB-A5ST 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-FB-A4P5         TCGA-FB-A545         TCGA-H6-8124 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-H6-A45N         TCGA-HZ-7289         TCGA-HZ-7918 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-HZ-7919         TCGA-HZ-7922         TCGA-HZ-7923 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-HZ-7924         TCGA-HZ-7925         TCGA-HZ-7926 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-HZ-8001         TCGA-HZ-8002         TCGA-HZ-8003 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-HZ-8005         TCGA-HZ-8315         TCGA-HZ-8317 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-HZ-8519         TCGA-HZ-8636         TCGA-HZ-8638 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-HZ-A49G         TCGA-HZ-A49H         TCGA-HZ-A4BH 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-HZ-A4BK         TCGA-IB-7644         TCGA-IB-7645 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-IB-7646         TCGA-IB-7647         TCGA-IB-7649 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-IB-7651         TCGA-IB-7652         TCGA-IB-7885 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-IB-7886         TCGA-IB-7887         TCGA-IB-7888 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-IB-7889         TCGA-IB-7890         TCGA-IB-7891 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-IB-7893         TCGA-IB-7897         TCGA-IB-8126 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-IB-8127         TCGA-IB-A5SO         TCGA-IB-A5SP 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-IB-A5SQ         TCGA-IB-A5SS         TCGA-IB-A5ST 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
[1] "hr=" "1.7"
D60V2, continuous
                    vv
clus                 STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  22Q LOSS MUTATED          0        0         2         6         0        1
  22Q LOSS WILD-TYPE        2        3         5        35         2        1
D60V3, multiclass
                    vv
clus                 T1+T2 T3+T4
  22Q LOSS MUTATED       0     9
  22Q LOSS WILD-TYPE     6    42
D60V4, multiclass
       clus
vv      22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  T1+T2                0                  6
  T3+T4                9                 42
D60V5, binary
                    cls
clus                  0  1
  22Q LOSS MUTATED    3  6
  22Q LOSS WILD-TYPE 11 37
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  22Q LOSS MUTATED      3    6
  22Q LOSS WILD-TYPE   11   37
   clus
vv  22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  0                3                 11
  1                6                 37
                    vv
clus                 M0 M1 MX
  22Q LOSS MUTATED    6  1  2
  22Q LOSS WILD-TYPE 26  1 21
D60V6, multiclass
    clus
vv   22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  M0                6                 26
  M1                1                  1
  MX                2                 21
D60V7, binary
                    cls
clus                  0  1
  22Q LOSS MUTATED    1  8
  22Q LOSS WILD-TYPE 30 18
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  22Q LOSS MUTATED      1    8
  22Q LOSS WILD-TYPE   30   18
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  FEMALE                1                 30
  MALE                  8                 18
                    vv
clus                 PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  22Q LOSS MUTATED                                     7
  22Q LOSS WILD-TYPE                                  44
                    vv
clus                 PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  22Q LOSS MUTATED                                       1
  22Q LOSS WILD-TYPE                                     3
                    vv
clus                 PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  22Q LOSS MUTATED                                                  0
  22Q LOSS WILD-TYPE                                                1
D60V8, multiclass
                                                  clus
vv                                                 22Q LOSS MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                             7
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                           1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                0
                                                  clus
vv                                                 22Q LOSS WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                              44
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                             3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                  1
D60V9, continuous
[1] "Remove cluster labels:" "22Q LOSS MUTATED"      
clus
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
                 2                 12 
        TCGA-F2-6880         TCGA-FB-A4P5         TCGA-H6-8124 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-H6-A45N         TCGA-IB-7644         TCGA-IB-7649 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-IB-7651         TCGA-IB-7885         TCGA-IB-7887 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-IB-7891         TCGA-IB-8126         TCGA-IB-A5SS 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
D60V10, continuous
[1] "Remove cluster labels:" "22Q LOSS MUTATED"      
clus
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
                 2                  9 
        TCGA-FB-A4P5         TCGA-H6-8124         TCGA-IB-7644 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-IB-7649         TCGA-IB-7651         TCGA-IB-7885 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-IB-7891         TCGA-IB-8126         TCGA-IB-A5SS 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
                    vv
clus                 R0 R1 RX
  22Q LOSS MUTATED    2  7  0
  22Q LOSS WILD-TYPE 30 14  2
D60V11, multiclass
    clus
vv   22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  R0                2                 30
  R1                7                 14
  RX                0                  2
D60V12, continuous

Clustering(61) Variable = XQ LOSS MUTATION ANALYSIS
D61V1, survival
                   sevent
clus2                0  1
  XQ LOSS MUTATED    3  0
  XQ LOSS WILD-TYPE 32 19
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
                3                51 
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
                0                19 
$`XQ LOSS MUTATED`
TCGA-H6-8124 TCGA-HZ-7918 TCGA-IB-7652 
       12.89         0.92        15.65 

$`XQ LOSS WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.96        11.84         7.07         5.03         5.19 
TCGA-FB-A4P5 TCGA-FB-A545 TCGA-H6-A45N TCGA-HZ-7289 TCGA-HZ-7919 TCGA-HZ-7922 
        0.13         0.03         7.63         7.86         0.66         0.13 
TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 
        0.26        12.13        12.03         0.26         0.62         0.99 
TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8636 
        0.69         3.91         0.92         0.49         0.10         0.16 
TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 
        2.96         0.76         1.02         5.98         1.51        11.41 
TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7885 
       49.38         4.77        21.86        15.35        19.82        27.98 
TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 
        4.04         3.58        43.79        15.78        19.66        16.04 
TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP 
        3.85        15.95         0.56        17.13        10.82         9.83 
TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST 
        7.20        15.12         0.26 

  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
             0.92              0.03 
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
            15.65             49.38 
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
            12.89              5.19 
[1] "0.9 - 15.7 (12.9)" "0.0 - 49.4 (5.2)" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A545 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-H6-8124        TCGA-H6-A45N        TCGA-HZ-7289        TCGA-HZ-7918 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-HZ-8519        TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-HZ-A49H        TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-IB-7645        TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-IB-7651        TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-IB-7887        TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-IB-7891        TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-IB-8127        TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-IB-A5SS        TCGA-IB-A5ST 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A545 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-H6-8124        TCGA-H6-A45N        TCGA-HZ-7289        TCGA-HZ-7918 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-HZ-8519        TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-HZ-A49H        TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-IB-7645        TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-IB-7651        TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-IB-7887        TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-IB-7891        TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-IB-8127        TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-IB-A5SS        TCGA-IB-A5ST 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A545 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-H6-8124        TCGA-H6-A45N        TCGA-HZ-7289        TCGA-HZ-7918 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-HZ-7919        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-HZ-8519        TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-HZ-A49H        TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-IB-7645        TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-IB-7651        TCGA-IB-7652        TCGA-IB-7885        TCGA-IB-7886 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-IB-7887        TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-IB-7891        TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-IB-8127        TCGA-IB-A5SO        TCGA-IB-A5SP        TCGA-IB-A5SQ 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-IB-A5SS        TCGA-IB-A5ST 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
[1] "hr="     "7.5e+07"
D61V2, continuous
                   vv
clus                STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III STAGE IV
  XQ LOSS MUTATED          0        0         0         3         0        0
  XQ LOSS WILD-TYPE        2        3         7        38         2        2
D61V3, multiclass
                   vv
clus                T1+T2 T3+T4
  XQ LOSS MUTATED       0     3
  XQ LOSS WILD-TYPE     6    48
D61V4, multiclass
       clus
vv      XQ LOSS MUTATED XQ LOSS WILD-TYPE
  T1+T2               0                 6
  T3+T4               3                48
D61V5, binary
                   cls
clus                 0  1
  XQ LOSS MUTATED    0  3
  XQ LOSS WILD-TYPE 14 40
[1] "tbl2"
                   cls
clus                [,1] [,2]
  XQ LOSS MUTATED      0    3
  XQ LOSS WILD-TYPE   14   40
   clus
vv  XQ LOSS MUTATED XQ LOSS WILD-TYPE
  0               0                14
  1               3                40
                   vv
clus                M0 M1 MX
  XQ LOSS MUTATED    3  0  0
  XQ LOSS WILD-TYPE 29  2 23
D61V6, multiclass
    clus
vv   XQ LOSS MUTATED XQ LOSS WILD-TYPE
  M0               3                29
  M1               0                 2
  MX               0                23
D61V7, binary
                   cls
clus                 0  1
  XQ LOSS MUTATED    2  1
  XQ LOSS WILD-TYPE 29 25
[1] "tbl2"
                   cls
clus                [,1] [,2]
  XQ LOSS MUTATED      2    1
  XQ LOSS WILD-TYPE   29   25
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  FEMALE               2                29
  MALE                 1                25
                   vv
clus                PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  XQ LOSS MUTATED                                     3
  XQ LOSS WILD-TYPE                                  48
                   vv
clus                PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  XQ LOSS MUTATED                                       0
  XQ LOSS WILD-TYPE                                     4
                   vv
clus                PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  XQ LOSS MUTATED                                                  0
  XQ LOSS WILD-TYPE                                                1
D61V8, multiclass
                                                  clus
vv                                                 XQ LOSS MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                            3
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                          0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA               0
                                                  clus
vv                                                 XQ LOSS WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                             48
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                            4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                 1
D61V9, continuous
[1] "Remove cluster labels:" "XQ LOSS MUTATED"       
clus
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
                1                13 
       TCGA-F2-6880        TCGA-FB-A4P5        TCGA-H6-A45N        TCGA-IB-7644 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-IB-7649        TCGA-IB-7651        TCGA-IB-7885        TCGA-IB-7886 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-IB-7887        TCGA-IB-7891        TCGA-IB-8126        TCGA-IB-8127 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-IB-A5SS 
"XQ LOSS WILD-TYPE" 
D61V10, continuous
[1] "Remove cluster labels:" "XQ LOSS MUTATED"       
clus
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
                1                10 
       TCGA-FB-A4P5        TCGA-IB-7644        TCGA-IB-7649        TCGA-IB-7651 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7891        TCGA-IB-8126 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-IB-8127        TCGA-IB-A5SS 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
                   vv
clus                R0 R1 RX
  XQ LOSS MUTATED    2  1  0
  XQ LOSS WILD-TYPE 30 20  2
D61V11, multiclass
    clus
vv   XQ LOSS MUTATED XQ LOSS WILD-TYPE
  R0               2                30
  R1               1                20
  RX               0                 2
D61V12, continuous
> q(save="no")
