
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/12/Correlate_Genomic_Events.R")
> result <- main("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/12/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-tTRUE", "-iD=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/PAAD-TP/6158612/transformed.cor.cli.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/Append_Data/PAAD-TP/6154740/PAAD-TP.merged_data.txt", "-fF=", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=1", "-cQ=0.25", "-MF=ONLYSIG", "-oT=PAAD-TP", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "terrence_modification_tag"
[1] TRUE
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"         "-oT=PAAD-TP"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/Append_Data/PAAD-TP/6154740/PAAD-TP.merged_data.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/PAAD-TP/6158612/transformed.cor.cli.txt"

nPatients in clinical file=58, in cluster file=81, common to both=57
[1] "Reduce the number of clustering variables from 49 to 46."
[1] 46 57
[1] "AMP PEAK  1(1P34.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  1(1P34.2) MUTATED AMP PEAK  1(1P34.2) WILD-TYPE 
                            3                            54 
  AMP PEAK  1(1P34.2) MUTATED AMP PEAK  1(1P34.2) WILD-TYPE 
                            3                            54 
[1] "AMP PEAK  2(1P12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  2(1P12) MUTATED AMP PEAK  2(1P12) WILD-TYPE 
                          6                          51 
  AMP PEAK  2(1P12) MUTATED AMP PEAK  2(1P12) WILD-TYPE 
                          6                          51 
[1] "AMP PEAK  5(7Q21.13) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  5(7Q21.13) MUTATED AMP PEAK  5(7Q21.13) WILD-TYPE 
                            14                             43 
  AMP PEAK  5(7Q21.13) MUTATED AMP PEAK  5(7Q21.13) WILD-TYPE 
                            14                             43 
[1] "AMP PEAK  6(7Q22.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  6(7Q22.1) MUTATED AMP PEAK  6(7Q22.1) WILD-TYPE 
                           14                            43 
  AMP PEAK  6(7Q22.1) MUTATED AMP PEAK  6(7Q22.1) WILD-TYPE 
                           14                            43 
[1] "AMP PEAK  7(8Q24.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  7(8Q24.21) MUTATED AMP PEAK  7(8Q24.21) WILD-TYPE 
                            21                             36 
  AMP PEAK  7(8Q24.21) MUTATED AMP PEAK  7(8Q24.21) WILD-TYPE 
                            21                             36 
[1] "AMP PEAK  8(9P13.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  8(9P13.3) MUTATED AMP PEAK  8(9P13.3) WILD-TYPE 
                            5                            52 
  AMP PEAK  8(9P13.3) MUTATED AMP PEAK  8(9P13.3) WILD-TYPE 
                            5                            52 
[1] "AMP PEAK  9(11P11.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  9(11P11.2) MUTATED AMP PEAK  9(11P11.2) WILD-TYPE 
                             6                             51 
  AMP PEAK  9(11P11.2) MUTATED AMP PEAK  9(11P11.2) WILD-TYPE 
                             6                             51 
[1] "AMP PEAK 10(12P13.33) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 10(12P13.33) MUTATED AMP PEAK 10(12P13.33) WILD-TYPE 
                              7                              50 
  AMP PEAK 10(12P13.33) MUTATED AMP PEAK 10(12P13.33) WILD-TYPE 
                              7                              50 
[1] "AMP PEAK 11(12P12.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 11(12P12.1) MUTATED AMP PEAK 11(12P12.1) WILD-TYPE 
                            12                             45 
  AMP PEAK 11(12P12.1) MUTATED AMP PEAK 11(12P12.1) WILD-TYPE 
                            12                             45 
[1] "AMP PEAK 12(12P11.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 12(12P11.21) MUTATED AMP PEAK 12(12P11.21) WILD-TYPE 
                             10                              47 
  AMP PEAK 12(12P11.21) MUTATED AMP PEAK 12(12P11.21) WILD-TYPE 
                             10                              47 
[1] "AMP PEAK 13(12Q15) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 13(12Q15) MUTATED AMP PEAK 13(12Q15) WILD-TYPE 
                           7                           50 
  AMP PEAK 13(12Q15) MUTATED AMP PEAK 13(12Q15) WILD-TYPE 
                           7                           50 
[1] "AMP PEAK 14(17P11.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 14(17P11.2) MUTATED AMP PEAK 14(17P11.2) WILD-TYPE 
                             3                             54 
  AMP PEAK 14(17P11.2) MUTATED AMP PEAK 14(17P11.2) WILD-TYPE 
                             3                             54 
[1] "AMP PEAK 15(17Q21.32) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 15(17Q21.32) MUTATED AMP PEAK 15(17Q21.32) WILD-TYPE 
                              7                              50 
  AMP PEAK 15(17Q21.32) MUTATED AMP PEAK 15(17Q21.32) WILD-TYPE 
                              7                              50 
[1] "AMP PEAK 16(18Q11.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 16(18Q11.2) MUTATED AMP PEAK 16(18Q11.2) WILD-TYPE 
                            16                             41 
  AMP PEAK 16(18Q11.2) MUTATED AMP PEAK 16(18Q11.2) WILD-TYPE 
                            16                             41 
[1] "AMP PEAK 17(19Q13.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 17(19Q13.2) MUTATED AMP PEAK 17(19Q13.2) WILD-TYPE 
                            13                             44 
  AMP PEAK 17(19Q13.2) MUTATED AMP PEAK 17(19Q13.2) WILD-TYPE 
                            13                             44 
[1] "AMP PEAK 18(20Q13.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 18(20Q13.2) MUTATED AMP PEAK 18(20Q13.2) WILD-TYPE 
                            14                             43 
  AMP PEAK 18(20Q13.2) MUTATED AMP PEAK 18(20Q13.2) WILD-TYPE 
                            14                             43 
[1] "AMP PEAK 19(XP22.11) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 19(XP22.11) MUTATED AMP PEAK 19(XP22.11) WILD-TYPE 
                             3                             54 
  AMP PEAK 19(XP22.11) MUTATED AMP PEAK 19(XP22.11) WILD-TYPE 
                             3                             54 
[1] "AMP PEAK 20(XQ27.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 20(XQ27.1) MUTATED AMP PEAK 20(XQ27.1) WILD-TYPE 
                            6                            51 
  AMP PEAK 20(XQ27.1) MUTATED AMP PEAK 20(XQ27.1) WILD-TYPE 
                            6                            51 
[1] "DEL PEAK  1(1P36.22) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  1(1P36.22) MUTATED DEL PEAK  1(1P36.22) WILD-TYPE 
                             9                             48 
  DEL PEAK  1(1P36.22) MUTATED DEL PEAK  1(1P36.22) WILD-TYPE 
                             9                             48 
[1] "DEL PEAK  2(1P36.11) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  2(1P36.11) MUTATED DEL PEAK  2(1P36.11) WILD-TYPE 
                            13                             44 
  DEL PEAK  2(1P36.11) MUTATED DEL PEAK  2(1P36.11) WILD-TYPE 
                            13                             44 
[1] "DEL PEAK  3(1P21.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  3(1P21.2) MUTATED DEL PEAK  3(1P21.2) WILD-TYPE 
                            9                            48 
  DEL PEAK  3(1P21.2) MUTATED DEL PEAK  3(1P21.2) WILD-TYPE 
                            9                            48 
[1] "DEL PEAK  4(2P23.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  4(2P23.3) MUTATED DEL PEAK  4(2P23.3) WILD-TYPE 
                            8                            49 
  DEL PEAK  4(2P23.3) MUTATED DEL PEAK  4(2P23.3) WILD-TYPE 
                            8                            49 
[1] "DEL PEAK  5(3P24.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  5(3P24.1) MUTATED DEL PEAK  5(3P24.1) WILD-TYPE 
                           14                            43 
  DEL PEAK  5(3P24.1) MUTATED DEL PEAK  5(3P24.1) WILD-TYPE 
                           14                            43 
[1] "DEL PEAK  6(4P16.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  6(4P16.1) MUTATED DEL PEAK  6(4P16.1) WILD-TYPE 
                            8                            49 
  DEL PEAK  6(4P16.1) MUTATED DEL PEAK  6(4P16.1) WILD-TYPE 
                            8                            49 
[1] "DEL PEAK  7(4Q35.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  7(4Q35.2) MUTATED DEL PEAK  7(4Q35.2) WILD-TYPE 
                            9                            48 
  DEL PEAK  7(4Q35.2) MUTATED DEL PEAK  7(4Q35.2) WILD-TYPE 
                            9                            48 
[1] "DEL PEAK  8(5Q14.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  8(5Q14.2) MUTATED DEL PEAK  8(5Q14.2) WILD-TYPE 
                            9                            48 
  DEL PEAK  8(5Q14.2) MUTATED DEL PEAK  8(5Q14.2) WILD-TYPE 
                            9                            48 
[1] "DEL PEAK  9(6P25.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  9(6P25.2) MUTATED DEL PEAK  9(6P25.2) WILD-TYPE 
                           21                            36 
  DEL PEAK  9(6P25.2) MUTATED DEL PEAK  9(6P25.2) WILD-TYPE 
                           21                            36 
[1] "DEL PEAK 10(7Q36.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 10(7Q36.1) MUTATED DEL PEAK 10(7Q36.1) WILD-TYPE 
                            5                            52 
  DEL PEAK 10(7Q36.1) MUTATED DEL PEAK 10(7Q36.1) WILD-TYPE 
                            5                            52 
[1] "DEL PEAK 11(8P21.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 11(8P21.3) MUTATED DEL PEAK 11(8P21.3) WILD-TYPE 
                           15                            42 
  DEL PEAK 11(8P21.3) MUTATED DEL PEAK 11(8P21.3) WILD-TYPE 
                           15                            42 
[1] "DEL PEAK 12(8Q12.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 12(8Q12.1) MUTATED DEL PEAK 12(8Q12.1) WILD-TYPE 
                            4                            53 
  DEL PEAK 12(8Q12.1) MUTATED DEL PEAK 12(8Q12.1) WILD-TYPE 
                            4                            53 
[1] "DEL PEAK 13(9P21.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 13(9P21.3) MUTATED DEL PEAK 13(9P21.3) WILD-TYPE 
                           32                            25 
  DEL PEAK 13(9P21.3) MUTATED DEL PEAK 13(9P21.3) WILD-TYPE 
                           32                            25 
[1] "DEL PEAK 14(9Q22.33) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 14(9Q22.33) MUTATED DEL PEAK 14(9Q22.33) WILD-TYPE 
                            13                             44 
  DEL PEAK 14(9Q22.33) MUTATED DEL PEAK 14(9Q22.33) WILD-TYPE 
                            13                             44 
[1] "DEL PEAK 15(10Q23.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 15(10Q23.2) MUTATED DEL PEAK 15(10Q23.2) WILD-TYPE 
                            10                             47 
  DEL PEAK 15(10Q23.2) MUTATED DEL PEAK 15(10Q23.2) WILD-TYPE 
                            10                             47 
[1] "DEL PEAK 16(11P15.4) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 16(11P15.4) MUTATED DEL PEAK 16(11P15.4) WILD-TYPE 
                            11                             46 
  DEL PEAK 16(11P15.4) MUTATED DEL PEAK 16(11P15.4) WILD-TYPE 
                            11                             46 
[1] "DEL PEAK 17(12P12.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 17(12P12.1) MUTATED DEL PEAK 17(12P12.1) WILD-TYPE 
                             7                             50 
  DEL PEAK 17(12P12.1) MUTATED DEL PEAK 17(12P12.1) WILD-TYPE 
                             7                             50 
[1] "DEL PEAK 18(12Q12) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 18(12Q12) MUTATED DEL PEAK 18(12Q12) WILD-TYPE 
                           7                           50 
  DEL PEAK 18(12Q12) MUTATED DEL PEAK 18(12Q12) WILD-TYPE 
                           7                           50 
[1] "DEL PEAK 19(12Q23.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 19(12Q23.3) MUTATED DEL PEAK 19(12Q23.3) WILD-TYPE 
                            13                             44 
  DEL PEAK 19(12Q23.3) MUTATED DEL PEAK 19(12Q23.3) WILD-TYPE 
                            13                             44 
[1] "DEL PEAK 20(15Q15.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 20(15Q15.1) MUTATED DEL PEAK 20(15Q15.1) WILD-TYPE 
                            11                             46 
  DEL PEAK 20(15Q15.1) MUTATED DEL PEAK 20(15Q15.1) WILD-TYPE 
                            11                             46 
[1] "DEL PEAK 22(17Q22) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 22(17Q22) MUTATED DEL PEAK 22(17Q22) WILD-TYPE 
                          16                           41 
  DEL PEAK 22(17Q22) MUTATED DEL PEAK 22(17Q22) WILD-TYPE 
                          16                           41 
[1] "DEL PEAK 23(18Q12.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 23(18Q12.1) MUTATED DEL PEAK 23(18Q12.1) WILD-TYPE 
                            29                             28 
  DEL PEAK 23(18Q12.1) MUTATED DEL PEAK 23(18Q12.1) WILD-TYPE 
                            29                             28 
[1] "DEL PEAK 24(18Q21.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 24(18Q21.2) MUTATED DEL PEAK 24(18Q21.2) WILD-TYPE 
                            37                             20 
  DEL PEAK 24(18Q21.2) MUTATED DEL PEAK 24(18Q21.2) WILD-TYPE 
                            37                             20 
[1] "DEL PEAK 25(19Q13.42) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 25(19Q13.42) MUTATED DEL PEAK 25(19Q13.42) WILD-TYPE 
                              7                              50 
  DEL PEAK 25(19Q13.42) MUTATED DEL PEAK 25(19Q13.42) WILD-TYPE 
                              7                              50 
[1] "DEL PEAK 26(21Q22.11) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 26(21Q22.11) MUTATED DEL PEAK 26(21Q22.11) WILD-TYPE 
                             19                              38 
  DEL PEAK 26(21Q22.11) MUTATED DEL PEAK 26(21Q22.11) WILD-TYPE 
                             19                              38 
[1] "DEL PEAK 27(21Q22.11) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 27(21Q22.11) MUTATED DEL PEAK 27(21Q22.11) WILD-TYPE 
                             19                              38 
  DEL PEAK 27(21Q22.11) MUTATED DEL PEAK 27(21Q22.11) WILD-TYPE 
                             19                              38 
[1] "DEL PEAK 28(22Q13.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 28(22Q13.31) MUTATED DEL PEAK 28(22Q13.31) WILD-TYPE 
                             13                              44 
  DEL PEAK 28(22Q13.31) MUTATED DEL PEAK 28(22Q13.31) WILD-TYPE 
                             13                              44 
[1] "DEL PEAK 29(XP22.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 29(XP22.2) MUTATED DEL PEAK 29(XP22.2) WILD-TYPE 
                            7                            50 
  DEL PEAK 29(XP22.2) MUTATED DEL PEAK 29(XP22.2) WILD-TYPE 
                            7                            50 
[1] "terrence_modification_tag"
[1] TRUE
[1] "data2feature, selection="
 [1] "YEARSTOBIRTH"                          
 [2] "VITALSTATUS"                           
 [3] "DAYSTODEATH"                           
 [4] "DAYSTOLASTFOLLOWUP"                    
 [5] "PRIMARYSITEOFDESEASE"                  
 [6] "NEOPLASM.DISEASESTAGE"                 
 [7] "PATHOLOGY.T.STAGE"                     
 [8] "PATHOLOGY.N.STAGE"                     
 [9] "PATHOLOGY.M.STAGE"                     
[10] "DCCUPLOADDATE"                         
[11] "GENDER"                                
[12] "DATEOFINITIALPATHOLOGICDIAGNOSIS"      
[13] "RADIATIONTHERAPY"                      
[14] "HISTOLOGICALTYPE"                      
[15] "RADIATIONS.RADIATION.REGIMENINDICATION"
[16] "NUMBERPACKYEARSSMOKED"                 
[17] "YEAROFTOBACCOSMOKINGONSET"             
[18] "COMPLETENESS.OF.RESECTION"             
[19] "NUMBER.OF.LYMPH.NODES"                 
[20] "GLEASON_SCORE"                         
[21] "PSA_VALUE"                             
[22] "DAYS_TO_PSA"                           
[23] "BATCHNUMBER"                           

Input Data has 23 rows and 57 columns.

[1] "Batch" "23"   
[1] "Last Follow UP"
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
          NA          303          360           NA          153          158 
TCGA-FB-A4P5 TCGA-FB-A545 TCGA-H6-8124 TCGA-H6-A45N TCGA-HZ-7289 TCGA-HZ-7918 
           4            1          392          232          239           28 
TCGA-HZ-7919 TCGA-HZ-7920 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
          20           NA            4            8          369          366 
TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 
           8           19           30           21           NA           28 
TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8636 TCGA-HZ-8637 TCGA-HZ-8638 TCGA-HZ-A49G 
          15            3            5           NA           90           23 
TCGA-HZ-A49H TCGA-HZ-A49I TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 
          31           NA          182           46          347           NA 
TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 
          NA           NA           NA           NA          476          851 
TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 
          NA           NA           NA           NA           NA          488 
TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP 
          NA           NA           17          521          329          299 
TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST 
          NA           NA            8 
Variable 1:'AGE':	nDistinctValues=32,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 3:'DAYSTODEATH':	nDistinctValues=19,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'DAYSTOLASTFOLLOWUP':	nDistinctValues=34,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 5:'PRIMARY.SITE.OF.DISEASE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 6:'NEOPLASM.DISEASESTAGE':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'PATHOLOGY.T.STAGE':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'PATHOLOGY.N.STAGE':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'PATHOLOGY.M.STAGE':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'DCCUPLOADDAY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 11:'GENDER':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'DAYOFINITIALPATHOLOGICDIAGNOSIS':	nDistinctValues=6,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 13:'RADIATION.THERAPY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 14:'HISTOLOGICAL.TYPE':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 15:'RADIATIONS.RADIATION.REGIMENINDICATION':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 16:'NUMBERPACKYEARSSMOKED':	nDistinctValues=10,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 17:'YEAROFTOBACCOSMOKINGONSET':	nDistinctValues=11,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 18:'COMPLETENESS.OF.RESECTION':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 19:'NUMBER.OF.LYMPH.NODES':	nDistinctValues=12,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 20:'GLEASON_SCORE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 21:'PSA_VALUE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 22:'DAYS_TO_PSA':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 23:'BATCH.NUMBER':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
 [1] "AGE"                       "NEOPLASM.DISEASESTAGE"    
 [3] "PATHOLOGY.T.STAGE"         "PATHOLOGY.N.STAGE"        
 [5] "PATHOLOGY.M.STAGE"         "GENDER"                   
 [7] "HISTOLOGICAL.TYPE"         "NUMBERPACKYEARSSMOKED"    
 [9] "YEAROFTOBACCOSMOKINGONSET" "COMPLETENESS.OF.RESECTION"
[11] "NUMBER.OF.LYMPH.NODES"    
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T" "3"          
[1] "PATHOLOGY.N" "4"          
Output Data has 57 columns, 1 survival variables, and 11 non-survival variables.
AGE, nv=32, binary=FALSE, numeric=TRUE
NEOPLASM.DISEASESTAGE, nv=6, binary=FALSE, numeric=FALSE
PATHOLOGY.T.STAGE, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.T',vnm)"
vv
T1 T2 T3 T4 
 2  4 49  2 
[1] "table(vv)"
vv
T1+T2 T3+T4 
    6    51 
$ClinVariableName
[1] "PATHOLOGY.T.STAGE"

$Table
vv
T1 T2 T3 T4 
 2  4 49  2 

$ClinVariableType
[1] "binary"

$Class0_nSamples
[1] 6

$Class1_nSamples
[1] 51

$Class0_label
[1] "T1+T2"

$Class1_label
[1] "T3+T4"


T1+T2 T3+T4 
    6    51 
PATHOLOGY.N.STAGE, nv=2, binary=FALSE, numeric=TRUE
PATHOLOGY.M.STAGE, nv=3, binary=FALSE, numeric=FALSE
GENDER, nv=2, binary=FALSE, numeric=FALSE
HISTOLOGICAL.TYPE, nv=3, binary=FALSE, numeric=FALSE
NUMBERPACKYEARSSMOKED, nv=10, binary=FALSE, numeric=TRUE
YEAROFTOBACCOSMOKINGONSET, nv=11, binary=FALSE, numeric=TRUE
COMPLETENESS.OF.RESECTION, nv=3, binary=FALSE, numeric=FALSE
NUMBER.OF.LYMPH.NODES, nv=12, binary=FALSE, numeric=TRUE

Clustering(1) Variable = AMP PEAK  1(1P34.2) MUTATION ANALYSIS
D1V1, survival
                               sevent
clus2                            0  1
  AMP PEAK  1(1P34.2) MUTATED    2  0
  AMP PEAK  1(1P34.2) WILD-TYPE 33 19
  AMP PEAK  1(1P34.2) MUTATED AMP PEAK  1(1P34.2) WILD-TYPE 
                            2                            52 
  AMP PEAK  1(1P34.2) MUTATED AMP PEAK  1(1P34.2) WILD-TYPE 
                            0                            19 
$`AMP PEAK  1(1P34.2) MUTATED`
TCGA-HZ-7289 TCGA-HZ-7925 
        7.86        12.03 

$`AMP PEAK  1(1P34.2) WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.96        11.84         7.07         5.03         5.19 
TCGA-FB-A4P5 TCGA-FB-A545 TCGA-H6-8124 TCGA-H6-A45N TCGA-HZ-7918 TCGA-HZ-7919 
        0.13         0.03        12.89         7.63         0.92         0.66 
TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 
        0.13         0.26        12.13         0.26         0.62         0.99 
TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8636 
        0.69         3.91         0.92         0.49         0.10         0.16 
TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 
        2.96         0.76         1.02         5.98         1.51        11.41 
TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 
       49.38         4.77        21.86        15.35        19.82        15.65 
TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 
       27.98         4.04         3.58        43.79        15.78        19.66 
TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO 
       16.04         3.85        15.95         0.56        17.13        10.82 
TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST 
        9.83         7.20        15.12         0.26 

  AMP PEAK  1(1P34.2) MUTATED AMP PEAK  1(1P34.2) WILD-TYPE 
                         7.86                          0.03 
  AMP PEAK  1(1P34.2) MUTATED AMP PEAK  1(1P34.2) WILD-TYPE 
                        12.03                         49.38 
  AMP PEAK  1(1P34.2) MUTATED AMP PEAK  1(1P34.2) WILD-TYPE 
                        9.945                         5.110 
[1] "7.9 - 12.0 (9.9)" "0.0 - 49.4 (5.1)"
                   TCGA-F2-6879                    TCGA-F2-6880 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-F2-7273                    TCGA-F2-7276 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-F2-A44G                    TCGA-F2-A44H 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-FB-A4P5                    TCGA-FB-A545 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-H6-8124                    TCGA-H6-A45N 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-HZ-7289                    TCGA-HZ-7918 
  "AMP PEAK  1(1P34.2) MUTATED" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-HZ-7919                    TCGA-HZ-7922 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-HZ-7923                    TCGA-HZ-7924 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-HZ-7925                    TCGA-HZ-7926 
  "AMP PEAK  1(1P34.2) MUTATED" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-HZ-8001                    TCGA-HZ-8002 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-HZ-8003                    TCGA-HZ-8005 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-HZ-8315                    TCGA-HZ-8317 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-HZ-8519                    TCGA-HZ-8636 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-HZ-8638                    TCGA-HZ-A49G 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-HZ-A49H                    TCGA-HZ-A4BH 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-HZ-A4BK                    TCGA-IB-7644 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-IB-7645                    TCGA-IB-7646 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-IB-7647                    TCGA-IB-7649 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-IB-7651                    TCGA-IB-7652 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-IB-7885                    TCGA-IB-7886 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-IB-7887                    TCGA-IB-7888 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-IB-7889                    TCGA-IB-7890 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-IB-7891                    TCGA-IB-7893 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-IB-7897                    TCGA-IB-8126 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-IB-8127                    TCGA-IB-A5SO 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-IB-A5SP                    TCGA-IB-A5SQ 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-IB-A5SS                    TCGA-IB-A5ST 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-F2-6879                    TCGA-F2-6880 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-F2-7273                    TCGA-F2-7276 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-F2-A44G                    TCGA-F2-A44H 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-FB-A4P5                    TCGA-FB-A545 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-H6-8124                    TCGA-H6-A45N 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-HZ-7289                    TCGA-HZ-7918 
  "AMP PEAK  1(1P34.2) MUTATED" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-HZ-7919                    TCGA-HZ-7922 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-HZ-7923                    TCGA-HZ-7924 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-HZ-7925                    TCGA-HZ-7926 
  "AMP PEAK  1(1P34.2) MUTATED" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-HZ-8001                    TCGA-HZ-8002 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-HZ-8003                    TCGA-HZ-8005 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-HZ-8315                    TCGA-HZ-8317 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-HZ-8519                    TCGA-HZ-8636 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-HZ-8638                    TCGA-HZ-A49G 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-HZ-A49H                    TCGA-HZ-A4BH 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-HZ-A4BK                    TCGA-IB-7644 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-IB-7645                    TCGA-IB-7646 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-IB-7647                    TCGA-IB-7649 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-IB-7651                    TCGA-IB-7652 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-IB-7885                    TCGA-IB-7886 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-IB-7887                    TCGA-IB-7888 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-IB-7889                    TCGA-IB-7890 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-IB-7891                    TCGA-IB-7893 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-IB-7897                    TCGA-IB-8126 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-IB-8127                    TCGA-IB-A5SO 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-IB-A5SP                    TCGA-IB-A5SQ 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-IB-A5SS                    TCGA-IB-A5ST 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-F2-6879                    TCGA-F2-6880 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-F2-7273                    TCGA-F2-7276 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-F2-A44G                    TCGA-F2-A44H 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-FB-A4P5                    TCGA-FB-A545 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-H6-8124                    TCGA-H6-A45N 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-HZ-7289                    TCGA-HZ-7918 
  "AMP PEAK  1(1P34.2) MUTATED" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-HZ-7919                    TCGA-HZ-7922 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-HZ-7923                    TCGA-HZ-7924 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-HZ-7925                    TCGA-HZ-7926 
  "AMP PEAK  1(1P34.2) MUTATED" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-HZ-8001                    TCGA-HZ-8002 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-HZ-8003                    TCGA-HZ-8005 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-HZ-8315                    TCGA-HZ-8317 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-HZ-8519                    TCGA-HZ-8636 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-HZ-8638                    TCGA-HZ-A49G 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-HZ-A49H                    TCGA-HZ-A4BH 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-HZ-A4BK                    TCGA-IB-7644 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-IB-7645                    TCGA-IB-7646 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-IB-7647                    TCGA-IB-7649 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-IB-7651                    TCGA-IB-7652 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-IB-7885                    TCGA-IB-7886 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-IB-7887                    TCGA-IB-7888 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-IB-7889                    TCGA-IB-7890 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-IB-7891                    TCGA-IB-7893 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-IB-7897                    TCGA-IB-8126 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-IB-8127                    TCGA-IB-A5SO 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-IB-A5SP                    TCGA-IB-A5SQ 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-IB-A5SS                    TCGA-IB-A5ST 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
[1] "Remove cluster labels:"      "AMP PEAK  1(1P34.2) MUTATED"
clus
  AMP PEAK  1(1P34.2) MUTATED AMP PEAK  1(1P34.2) WILD-TYPE 
                            2                            52 
                   TCGA-F2-6879                    TCGA-F2-6880 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-F2-7273                    TCGA-F2-7276 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-F2-A44G                    TCGA-F2-A44H 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-FB-A4P5                    TCGA-FB-A545 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-H6-8124                    TCGA-H6-A45N 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-HZ-7918                    TCGA-HZ-7919 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-HZ-7922                    TCGA-HZ-7923 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-HZ-7924                    TCGA-HZ-7926 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-HZ-8001                    TCGA-HZ-8002 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-HZ-8003                    TCGA-HZ-8005 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-HZ-8315                    TCGA-HZ-8317 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-HZ-8519                    TCGA-HZ-8636 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-HZ-8638                    TCGA-HZ-A49G 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-HZ-A49H                    TCGA-HZ-A4BH 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-HZ-A4BK                    TCGA-IB-7644 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-IB-7645                    TCGA-IB-7646 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-IB-7647                    TCGA-IB-7649 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-IB-7651                    TCGA-IB-7652 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-IB-7885                    TCGA-IB-7886 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-IB-7887                    TCGA-IB-7888 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-IB-7889                    TCGA-IB-7890 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-IB-7891                    TCGA-IB-7893 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-IB-7897                    TCGA-IB-8126 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-IB-8127                    TCGA-IB-A5SO 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-IB-A5SP                    TCGA-IB-A5SQ 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-IB-A5SS                    TCGA-IB-A5ST 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
D1V2, continuous
                               vv
clus                            STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III
  AMP PEAK  1(1P34.2) MUTATED          0        0         0         3         0
  AMP PEAK  1(1P34.2) WILD-TYPE        2        3         7        38         2
                               vv
clus                            STAGE IV
  AMP PEAK  1(1P34.2) MUTATED          0
  AMP PEAK  1(1P34.2) WILD-TYPE        2
D1V3, multiclass
                               vv
clus                            T1+T2 T3+T4
  AMP PEAK  1(1P34.2) MUTATED       0     3
  AMP PEAK  1(1P34.2) WILD-TYPE     6    48
D1V4, multiclass
       clus
vv      AMP PEAK  1(1P34.2) MUTATED AMP PEAK  1(1P34.2) WILD-TYPE
  T1+T2                           0                             6
  T3+T4                           3                            48
D1V5, binary
                               cls
clus                             0  1
  AMP PEAK  1(1P34.2) MUTATED    0  3
  AMP PEAK  1(1P34.2) WILD-TYPE 14 40
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  1(1P34.2) MUTATED      0    3
  AMP PEAK  1(1P34.2) WILD-TYPE   14   40
   clus
vv  AMP PEAK  1(1P34.2) MUTATED AMP PEAK  1(1P34.2) WILD-TYPE
  0                           0                            14
  1                           3                            40
                               vv
clus                            M0 M1 MX
  AMP PEAK  1(1P34.2) MUTATED    0  0  3
  AMP PEAK  1(1P34.2) WILD-TYPE 32  2 20
D1V6, multiclass
    clus
vv   AMP PEAK  1(1P34.2) MUTATED AMP PEAK  1(1P34.2) WILD-TYPE
  M0                           0                            32
  M1                           0                             2
  MX                           3                            20
D1V7, binary
                               cls
clus                             0  1
  AMP PEAK  1(1P34.2) MUTATED    1  2
  AMP PEAK  1(1P34.2) WILD-TYPE 30 24
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  1(1P34.2) MUTATED      1    2
  AMP PEAK  1(1P34.2) WILD-TYPE   30   24
        clus
vv       AMP PEAK  1(1P34.2) MUTATED AMP PEAK  1(1P34.2) WILD-TYPE
  FEMALE                           1                            30
  MALE                             2                            24
                               vv
clus                            PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  AMP PEAK  1(1P34.2) MUTATED                                     2
  AMP PEAK  1(1P34.2) WILD-TYPE                                  49
                               vv
clus                            PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  AMP PEAK  1(1P34.2) MUTATED                                       1
  AMP PEAK  1(1P34.2) WILD-TYPE                                     3
                               vv
clus                            PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  AMP PEAK  1(1P34.2) MUTATED                                                  0
  AMP PEAK  1(1P34.2) WILD-TYPE                                                1
D1V8, multiclass
                                                  clus
vv                                                 AMP PEAK  1(1P34.2) MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                        2
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                      1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                           0
                                                  clus
vv                                                 AMP PEAK  1(1P34.2) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                         49
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                        3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                             1
D1V9, continuous
D1V10, continuous
                               vv
clus                            R0 R1 RX
  AMP PEAK  1(1P34.2) MUTATED    2  0  1
  AMP PEAK  1(1P34.2) WILD-TYPE 30 21  1
D1V11, multiclass
    clus
vv   AMP PEAK  1(1P34.2) MUTATED AMP PEAK  1(1P34.2) WILD-TYPE
  R0                           2                            30
  R1                           0                            21
  RX                           1                             1
D1V12, continuous

Clustering(2) Variable = AMP PEAK  2(1P12) MUTATION ANALYSIS
D2V1, survival
                             sevent
clus2                          0  1
  AMP PEAK  2(1P12) MUTATED    2  3
  AMP PEAK  2(1P12) WILD-TYPE 33 16
  AMP PEAK  2(1P12) MUTATED AMP PEAK  2(1P12) WILD-TYPE 
                          5                          49 
  AMP PEAK  2(1P12) MUTATED AMP PEAK  2(1P12) WILD-TYPE 
                          3                          16 
$`AMP PEAK  2(1P12) MUTATED`
TCGA-HZ-7925 TCGA-HZ-8636 TCGA-IB-7645 TCGA-IB-7889 TCGA-IB-7893 
       12.03         0.16        49.38        15.78         3.85 

$`AMP PEAK  2(1P12) WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.96        11.84         7.07         5.03         5.19 
TCGA-FB-A4P5 TCGA-FB-A545 TCGA-H6-8124 TCGA-H6-A45N TCGA-HZ-7289 TCGA-HZ-7918 
        0.13         0.03        12.89         7.63         7.86         0.92 
TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7926 TCGA-HZ-8001 
        0.66         0.13         0.26        12.13         0.26         0.62 
TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8519 
        0.99         0.69         3.91         0.92         0.49         0.10 
TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 
        2.96         0.76         1.02         5.98         1.51        11.41 
TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 
        4.77        21.86        15.35        19.82        15.65        27.98 
TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7897 
        4.04         3.58        43.79        19.66        16.04        15.95 
TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS 
        0.56        17.13        10.82         9.83         7.20        15.12 
TCGA-IB-A5ST 
        0.26 

  AMP PEAK  2(1P12) MUTATED AMP PEAK  2(1P12) WILD-TYPE 
                       0.16                        0.03 
  AMP PEAK  2(1P12) MUTATED AMP PEAK  2(1P12) WILD-TYPE 
                      49.38                       43.79 
  AMP PEAK  2(1P12) MUTATED AMP PEAK  2(1P12) WILD-TYPE 
                      12.03                        5.19 
[1] "0.2 - 49.4 (12.0)" "0.0 - 43.8 (5.2)" 
                 TCGA-F2-6879                  TCGA-F2-6880 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-F2-7273                  TCGA-F2-7276 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-F2-A44G                  TCGA-F2-A44H 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-FB-A4P5                  TCGA-FB-A545 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-H6-8124                  TCGA-H6-A45N 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-HZ-7289                  TCGA-HZ-7918 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-HZ-7919                  TCGA-HZ-7922 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-HZ-7923                  TCGA-HZ-7924 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-HZ-7925                  TCGA-HZ-7926 
  "AMP PEAK  2(1P12) MUTATED" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-HZ-8001                  TCGA-HZ-8002 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-HZ-8003                  TCGA-HZ-8005 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-HZ-8315                  TCGA-HZ-8317 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-HZ-8519                  TCGA-HZ-8636 
"AMP PEAK  2(1P12) WILD-TYPE"   "AMP PEAK  2(1P12) MUTATED" 
                 TCGA-HZ-8638                  TCGA-HZ-A49G 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-HZ-A49H                  TCGA-HZ-A4BH 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-HZ-A4BK                  TCGA-IB-7644 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-IB-7645                  TCGA-IB-7646 
  "AMP PEAK  2(1P12) MUTATED" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-IB-7647                  TCGA-IB-7649 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-IB-7651                  TCGA-IB-7652 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-IB-7885                  TCGA-IB-7886 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-IB-7887                  TCGA-IB-7888 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-IB-7889                  TCGA-IB-7890 
  "AMP PEAK  2(1P12) MUTATED" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-IB-7891                  TCGA-IB-7893 
"AMP PEAK  2(1P12) WILD-TYPE"   "AMP PEAK  2(1P12) MUTATED" 
                 TCGA-IB-7897                  TCGA-IB-8126 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-IB-8127                  TCGA-IB-A5SO 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-IB-A5SP                  TCGA-IB-A5SQ 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-IB-A5SS                  TCGA-IB-A5ST 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-F2-6879                  TCGA-F2-6880 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-F2-7273                  TCGA-F2-7276 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-F2-A44G                  TCGA-F2-A44H 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-FB-A4P5                  TCGA-FB-A545 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-H6-8124                  TCGA-H6-A45N 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-HZ-7289                  TCGA-HZ-7918 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-HZ-7919                  TCGA-HZ-7922 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-HZ-7923                  TCGA-HZ-7924 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-HZ-7925                  TCGA-HZ-7926 
  "AMP PEAK  2(1P12) MUTATED" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-HZ-8001                  TCGA-HZ-8002 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-HZ-8003                  TCGA-HZ-8005 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-HZ-8315                  TCGA-HZ-8317 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-HZ-8519                  TCGA-HZ-8636 
"AMP PEAK  2(1P12) WILD-TYPE"   "AMP PEAK  2(1P12) MUTATED" 
                 TCGA-HZ-8638                  TCGA-HZ-A49G 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-HZ-A49H                  TCGA-HZ-A4BH 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-HZ-A4BK                  TCGA-IB-7644 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-IB-7645                  TCGA-IB-7646 
  "AMP PEAK  2(1P12) MUTATED" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-IB-7647                  TCGA-IB-7649 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-IB-7651                  TCGA-IB-7652 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-IB-7885                  TCGA-IB-7886 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-IB-7887                  TCGA-IB-7888 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-IB-7889                  TCGA-IB-7890 
  "AMP PEAK  2(1P12) MUTATED" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-IB-7891                  TCGA-IB-7893 
"AMP PEAK  2(1P12) WILD-TYPE"   "AMP PEAK  2(1P12) MUTATED" 
                 TCGA-IB-7897                  TCGA-IB-8126 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-IB-8127                  TCGA-IB-A5SO 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-IB-A5SP                  TCGA-IB-A5SQ 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-IB-A5SS                  TCGA-IB-A5ST 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-F2-6879                  TCGA-F2-6880 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-F2-7273                  TCGA-F2-7276 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-F2-A44G                  TCGA-F2-A44H 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-FB-A4P5                  TCGA-FB-A545 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-H6-8124                  TCGA-H6-A45N 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-HZ-7289                  TCGA-HZ-7918 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-HZ-7919                  TCGA-HZ-7922 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-HZ-7923                  TCGA-HZ-7924 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-HZ-7925                  TCGA-HZ-7926 
  "AMP PEAK  2(1P12) MUTATED" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-HZ-8001                  TCGA-HZ-8002 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-HZ-8003                  TCGA-HZ-8005 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-HZ-8315                  TCGA-HZ-8317 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-HZ-8519                  TCGA-HZ-8636 
"AMP PEAK  2(1P12) WILD-TYPE"   "AMP PEAK  2(1P12) MUTATED" 
                 TCGA-HZ-8638                  TCGA-HZ-A49G 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-HZ-A49H                  TCGA-HZ-A4BH 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-HZ-A4BK                  TCGA-IB-7644 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-IB-7645                  TCGA-IB-7646 
  "AMP PEAK  2(1P12) MUTATED" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-IB-7647                  TCGA-IB-7649 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-IB-7651                  TCGA-IB-7652 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-IB-7885                  TCGA-IB-7886 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-IB-7887                  TCGA-IB-7888 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-IB-7889                  TCGA-IB-7890 
  "AMP PEAK  2(1P12) MUTATED" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-IB-7891                  TCGA-IB-7893 
"AMP PEAK  2(1P12) WILD-TYPE"   "AMP PEAK  2(1P12) MUTATED" 
                 TCGA-IB-7897                  TCGA-IB-8126 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-IB-8127                  TCGA-IB-A5SO 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-IB-A5SP                  TCGA-IB-A5SQ 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
                 TCGA-IB-A5SS                  TCGA-IB-A5ST 
"AMP PEAK  2(1P12) WILD-TYPE" "AMP PEAK  2(1P12) WILD-TYPE" 
[1] "hr=" "1.6"
D2V2, continuous
                             vv
clus                          STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III
  AMP PEAK  2(1P12) MUTATED          0        0         1         4         0
  AMP PEAK  2(1P12) WILD-TYPE        2        3         6        37         2
                             vv
clus                          STAGE IV
  AMP PEAK  2(1P12) MUTATED          1
  AMP PEAK  2(1P12) WILD-TYPE        1
D2V3, multiclass
                             vv
clus                          T1+T2 T3+T4
  AMP PEAK  2(1P12) MUTATED       0     6
  AMP PEAK  2(1P12) WILD-TYPE     6    45
D2V4, multiclass
       clus
vv      AMP PEAK  2(1P12) MUTATED AMP PEAK  2(1P12) WILD-TYPE
  T1+T2                         0                           6
  T3+T4                         6                          45
D2V5, binary
                             cls
clus                           0  1
  AMP PEAK  2(1P12) MUTATED    2  4
  AMP PEAK  2(1P12) WILD-TYPE 12 39
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  2(1P12) MUTATED      2    4
  AMP PEAK  2(1P12) WILD-TYPE   12   39
   clus
vv  AMP PEAK  2(1P12) MUTATED AMP PEAK  2(1P12) WILD-TYPE
  0                         2                          12
  1                         4                          39
                             vv
clus                          M0 M1 MX
  AMP PEAK  2(1P12) MUTATED    3  1  2
  AMP PEAK  2(1P12) WILD-TYPE 29  1 21
D2V6, multiclass
    clus
vv   AMP PEAK  2(1P12) MUTATED AMP PEAK  2(1P12) WILD-TYPE
  M0                         3                          29
  M1                         1                           1
  MX                         2                          21
D2V7, binary
                             cls
clus                           0  1
  AMP PEAK  2(1P12) MUTATED    4  2
  AMP PEAK  2(1P12) WILD-TYPE 27 24
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  2(1P12) MUTATED      4    2
  AMP PEAK  2(1P12) WILD-TYPE   27   24
        clus
vv       AMP PEAK  2(1P12) MUTATED AMP PEAK  2(1P12) WILD-TYPE
  FEMALE                         4                          27
  MALE                           2                          24
                             vv
clus                          PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  AMP PEAK  2(1P12) MUTATED                                     6
  AMP PEAK  2(1P12) WILD-TYPE                                  45
                             vv
clus                          PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  AMP PEAK  2(1P12) MUTATED                                       0
  AMP PEAK  2(1P12) WILD-TYPE                                     4
                             vv
clus                          PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  AMP PEAK  2(1P12) MUTATED                                                  0
  AMP PEAK  2(1P12) WILD-TYPE                                                1
D2V8, multiclass
                                                  clus
vv                                                 AMP PEAK  2(1P12) MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                      6
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                    0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                         0
                                                  clus
vv                                                 AMP PEAK  2(1P12) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                       45
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                      4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                           1
D2V9, continuous
D2V10, continuous
                             vv
clus                          R0 R1 RX
  AMP PEAK  2(1P12) MUTATED    5  1  0
  AMP PEAK  2(1P12) WILD-TYPE 27 20  2
D2V11, multiclass
    clus
vv   AMP PEAK  2(1P12) MUTATED AMP PEAK  2(1P12) WILD-TYPE
  R0                         5                          27
  R1                         1                          20
  RX                         0                           2
D2V12, continuous

Clustering(3) Variable = AMP PEAK  5(7Q21.13) MUTATION ANALYSIS
D3V1, survival
                                sevent
clus2                             0  1
  AMP PEAK  5(7Q21.13) MUTATED    9  5
  AMP PEAK  5(7Q21.13) WILD-TYPE 26 14
  AMP PEAK  5(7Q21.13) MUTATED AMP PEAK  5(7Q21.13) WILD-TYPE 
                            14                             40 
  AMP PEAK  5(7Q21.13) MUTATED AMP PEAK  5(7Q21.13) WILD-TYPE 
                             5                             14 
$`AMP PEAK  5(7Q21.13) MUTATED`
TCGA-FB-A545 TCGA-H6-8124 TCGA-HZ-7289 TCGA-HZ-7926 TCGA-HZ-8005 TCGA-HZ-8636 
        0.03        12.89         7.86         0.26         3.91         0.16 
TCGA-HZ-A4BH TCGA-IB-7645 TCGA-IB-7652 TCGA-IB-7886 TCGA-IB-7889 TCGA-IB-7893 
        5.98        49.38        15.65         4.04        15.78         3.85 
TCGA-IB-8127 TCGA-IB-A5SP 
       17.13         9.83 

$`AMP PEAK  5(7Q21.13) WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.96        11.84         7.07         5.03         5.19 
TCGA-FB-A4P5 TCGA-H6-A45N TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 
        0.13         7.63         0.92         0.66         0.13         0.26 
TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8315 
       12.13        12.03         0.62         0.99         0.69         0.92 
TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BK 
        0.49         0.10         2.96         0.76         1.02         1.51 
TCGA-IB-7644 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7885 
       11.41         4.77        21.86        15.35        19.82        27.98 
TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7897 TCGA-IB-8126 
        3.58        43.79        19.66        16.04        15.95         0.56 
TCGA-IB-A5SO TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST 
       10.82         7.20        15.12         0.26 

  AMP PEAK  5(7Q21.13) MUTATED AMP PEAK  5(7Q21.13) WILD-TYPE 
                          0.03                           0.10 
  AMP PEAK  5(7Q21.13) MUTATED AMP PEAK  5(7Q21.13) WILD-TYPE 
                         49.38                          43.79 
  AMP PEAK  5(7Q21.13) MUTATED AMP PEAK  5(7Q21.13) WILD-TYPE 
                          6.92                           5.11 
[1] "0.0 - 49.4 (6.9)" "0.1 - 43.8 (5.1)"
                    TCGA-F2-6879                     TCGA-F2-6880 
"AMP PEAK  5(7Q21.13) WILD-TYPE" "AMP PEAK  5(7Q21.13) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"AMP PEAK  5(7Q21.13) WILD-TYPE" "AMP PEAK  5(7Q21.13) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
"AMP PEAK  5(7Q21.13) WILD-TYPE" "AMP PEAK  5(7Q21.13) WILD-TYPE" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"AMP PEAK  5(7Q21.13) WILD-TYPE"   "AMP PEAK  5(7Q21.13) MUTATED" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
  "AMP PEAK  5(7Q21.13) MUTATED" "AMP PEAK  5(7Q21.13) WILD-TYPE" 
                    TCGA-HZ-7289                     TCGA-HZ-7918 
  "AMP PEAK  5(7Q21.13) MUTATED" "AMP PEAK  5(7Q21.13) WILD-TYPE" 
                    TCGA-HZ-7919                     TCGA-HZ-7922 
"AMP PEAK  5(7Q21.13) WILD-TYPE" "AMP PEAK  5(7Q21.13) WILD-TYPE" 
                    TCGA-HZ-7923                     TCGA-HZ-7924 
"AMP PEAK  5(7Q21.13) WILD-TYPE" "AMP PEAK  5(7Q21.13) WILD-TYPE" 
                    TCGA-HZ-7925                     TCGA-HZ-7926 
"AMP PEAK  5(7Q21.13) WILD-TYPE"   "AMP PEAK  5(7Q21.13) MUTATED" 
                    TCGA-HZ-8001                     TCGA-HZ-8002 
"AMP PEAK  5(7Q21.13) WILD-TYPE" "AMP PEAK  5(7Q21.13) WILD-TYPE" 
                    TCGA-HZ-8003                     TCGA-HZ-8005 
"AMP PEAK  5(7Q21.13) WILD-TYPE"   "AMP PEAK  5(7Q21.13) MUTATED" 
                    TCGA-HZ-8315                     TCGA-HZ-8317 
"AMP PEAK  5(7Q21.13) WILD-TYPE" "AMP PEAK  5(7Q21.13) WILD-TYPE" 
                    TCGA-HZ-8519                     TCGA-HZ-8636 
"AMP PEAK  5(7Q21.13) WILD-TYPE"   "AMP PEAK  5(7Q21.13) MUTATED" 
                    TCGA-HZ-8638                     TCGA-HZ-A49G 
"AMP PEAK  5(7Q21.13) WILD-TYPE" "AMP PEAK  5(7Q21.13) WILD-TYPE" 
                    TCGA-HZ-A49H                     TCGA-HZ-A4BH 
"AMP PEAK  5(7Q21.13) WILD-TYPE"   "AMP PEAK  5(7Q21.13) MUTATED" 
                    TCGA-HZ-A4BK                     TCGA-IB-7644 
"AMP PEAK  5(7Q21.13) WILD-TYPE" "AMP PEAK  5(7Q21.13) WILD-TYPE" 
                    TCGA-IB-7645                     TCGA-IB-7646 
  "AMP PEAK  5(7Q21.13) MUTATED" "AMP PEAK  5(7Q21.13) WILD-TYPE" 
                    TCGA-IB-7647                     TCGA-IB-7649 
"AMP PEAK  5(7Q21.13) WILD-TYPE" "AMP PEAK  5(7Q21.13) WILD-TYPE" 
                    TCGA-IB-7651                     TCGA-IB-7652 
"AMP PEAK  5(7Q21.13) WILD-TYPE"   "AMP PEAK  5(7Q21.13) MUTATED" 
                    TCGA-IB-7885                     TCGA-IB-7886 
"AMP PEAK  5(7Q21.13) WILD-TYPE"   "AMP PEAK  5(7Q21.13) MUTATED" 
                    TCGA-IB-7887                     TCGA-IB-7888 
"AMP PEAK  5(7Q21.13) WILD-TYPE" "AMP PEAK  5(7Q21.13) WILD-TYPE" 
                    TCGA-IB-7889                     TCGA-IB-7890 
  "AMP PEAK  5(7Q21.13) MUTATED" "AMP PEAK  5(7Q21.13) WILD-TYPE" 
                    TCGA-IB-7891                     TCGA-IB-7893 
"AMP PEAK  5(7Q21.13) WILD-TYPE"   "AMP PEAK  5(7Q21.13) MUTATED" 
                    TCGA-IB-7897                     TCGA-IB-8126 
"AMP PEAK  5(7Q21.13) WILD-TYPE" "AMP PEAK  5(7Q21.13) WILD-TYPE" 
                    TCGA-IB-8127                     TCGA-IB-A5SO 
  "AMP PEAK  5(7Q21.13) MUTATED" "AMP PEAK  5(7Q21.13) WILD-TYPE" 
                    TCGA-IB-A5SP                     TCGA-IB-A5SQ 
  "AMP PEAK  5(7Q21.13) MUTATED" "AMP PEAK  5(7Q21.13) WILD-TYPE" 
                    TCGA-IB-A5SS                     TCGA-IB-A5ST 
"AMP PEAK  5(7Q21.13) WILD-TYPE" "AMP PEAK  5(7Q21.13) WILD-TYPE" 
                    TCGA-F2-6879                     TCGA-F2-6880 
"AMP PEAK  5(7Q21.13) WILD-TYPE" "AMP PEAK  5(7Q21.13) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"AMP PEAK  5(7Q21.13) WILD-TYPE" "AMP PEAK  5(7Q21.13) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
"AMP PEAK  5(7Q21.13) WILD-TYPE" "AMP PEAK  5(7Q21.13) WILD-TYPE" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"AMP PEAK  5(7Q21.13) WILD-TYPE"   "AMP PEAK  5(7Q21.13) MUTATED" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
  "AMP PEAK  5(7Q21.13) MUTATED" "AMP PEAK  5(7Q21.13) WILD-TYPE" 
                    TCGA-HZ-7289                     TCGA-HZ-7918 
  "AMP PEAK  5(7Q21.13) MUTATED" "AMP PEAK  5(7Q21.13) WILD-TYPE" 
                    TCGA-HZ-7919                     TCGA-HZ-7922 
"AMP PEAK  5(7Q21.13) WILD-TYPE" "AMP PEAK  5(7Q21.13) WILD-TYPE" 
                    TCGA-HZ-7923                     TCGA-HZ-7924 
"AMP PEAK  5(7Q21.13) WILD-TYPE" "AMP PEAK  5(7Q21.13) WILD-TYPE" 
                    TCGA-HZ-7925                     TCGA-HZ-7926 
"AMP PEAK  5(7Q21.13) WILD-TYPE"   "AMP PEAK  5(7Q21.13) MUTATED" 
                    TCGA-HZ-8001                     TCGA-HZ-8002 
"AMP PEAK  5(7Q21.13) WILD-TYPE" "AMP PEAK  5(7Q21.13) WILD-TYPE" 
                    TCGA-HZ-8003                     TCGA-HZ-8005 
"AMP PEAK  5(7Q21.13) WILD-TYPE"   "AMP PEAK  5(7Q21.13) MUTATED" 
                    TCGA-HZ-8315                     TCGA-HZ-8317 
"AMP PEAK  5(7Q21.13) WILD-TYPE" "AMP PEAK  5(7Q21.13) WILD-TYPE" 
                    TCGA-HZ-8519                     TCGA-HZ-8636 
"AMP PEAK  5(7Q21.13) WILD-TYPE"   "AMP PEAK  5(7Q21.13) MUTATED" 
                    TCGA-HZ-8638                     TCGA-HZ-A49G 
"AMP PEAK  5(7Q21.13) WILD-TYPE" "AMP PEAK  5(7Q21.13) WILD-TYPE" 
                    TCGA-HZ-A49H                     TCGA-HZ-A4BH 
"AMP PEAK  5(7Q21.13) WILD-TYPE"   "AMP PEAK  5(7Q21.13) MUTATED" 
                    TCGA-HZ-A4BK                     TCGA-IB-7644 
"AMP PEAK  5(7Q21.13) WILD-TYPE" "AMP PEAK  5(7Q21.13) WILD-TYPE" 
                    TCGA-IB-7645                     TCGA-IB-7646 
  "AMP PEAK  5(7Q21.13) MUTATED" "AMP PEAK  5(7Q21.13) WILD-TYPE" 
                    TCGA-IB-7647                     TCGA-IB-7649 
"AMP PEAK  5(7Q21.13) WILD-TYPE" "AMP PEAK  5(7Q21.13) WILD-TYPE" 
                    TCGA-IB-7651                     TCGA-IB-7652 
"AMP PEAK  5(7Q21.13) WILD-TYPE"   "AMP PEAK  5(7Q21.13) MUTATED" 
                    TCGA-IB-7885                     TCGA-IB-7886 
"AMP PEAK  5(7Q21.13) WILD-TYPE"   "AMP PEAK  5(7Q21.13) MUTATED" 
                    TCGA-IB-7887                     TCGA-IB-7888 
"AMP PEAK  5(7Q21.13) WILD-TYPE" "AMP PEAK  5(7Q21.13) WILD-TYPE" 
                    TCGA-IB-7889                     TCGA-IB-7890 
  "AMP PEAK  5(7Q21.13) MUTATED" "AMP PEAK  5(7Q21.13) WILD-TYPE" 
                    TCGA-IB-7891                     TCGA-IB-7893 
"AMP PEAK  5(7Q21.13) WILD-TYPE"   "AMP PEAK  5(7Q21.13) MUTATED" 
                    TCGA-IB-7897                     TCGA-IB-8126 
"AMP PEAK  5(7Q21.13) WILD-TYPE" "AMP PEAK  5(7Q21.13) WILD-TYPE" 
                    TCGA-IB-8127                     TCGA-IB-A5SO 
  "AMP PEAK  5(7Q21.13) MUTATED" "AMP PEAK  5(7Q21.13) WILD-TYPE" 
                    TCGA-IB-A5SP                     TCGA-IB-A5SQ 
  "AMP PEAK  5(7Q21.13) MUTATED" "AMP PEAK  5(7Q21.13) WILD-TYPE" 
                    TCGA-IB-A5SS                     TCGA-IB-A5ST 
"AMP PEAK  5(7Q21.13) WILD-TYPE" "AMP PEAK  5(7Q21.13) WILD-TYPE" 
                    TCGA-F2-6879                     TCGA-F2-6880 
"AMP PEAK  5(7Q21.13) WILD-TYPE" "AMP PEAK  5(7Q21.13) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"AMP PEAK  5(7Q21.13) WILD-TYPE" "AMP PEAK  5(7Q21.13) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
"AMP PEAK  5(7Q21.13) WILD-TYPE" "AMP PEAK  5(7Q21.13) WILD-TYPE" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"AMP PEAK  5(7Q21.13) WILD-TYPE"   "AMP PEAK  5(7Q21.13) MUTATED" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
  "AMP PEAK  5(7Q21.13) MUTATED" "AMP PEAK  5(7Q21.13) WILD-TYPE" 
                    TCGA-HZ-7289                     TCGA-HZ-7918 
  "AMP PEAK  5(7Q21.13) MUTATED" "AMP PEAK  5(7Q21.13) WILD-TYPE" 
                    TCGA-HZ-7919                     TCGA-HZ-7922 
"AMP PEAK  5(7Q21.13) WILD-TYPE" "AMP PEAK  5(7Q21.13) WILD-TYPE" 
                    TCGA-HZ-7923                     TCGA-HZ-7924 
"AMP PEAK  5(7Q21.13) WILD-TYPE" "AMP PEAK  5(7Q21.13) WILD-TYPE" 
                    TCGA-HZ-7925                     TCGA-HZ-7926 
"AMP PEAK  5(7Q21.13) WILD-TYPE"   "AMP PEAK  5(7Q21.13) MUTATED" 
                    TCGA-HZ-8001                     TCGA-HZ-8002 
"AMP PEAK  5(7Q21.13) WILD-TYPE" "AMP PEAK  5(7Q21.13) WILD-TYPE" 
                    TCGA-HZ-8003                     TCGA-HZ-8005 
"AMP PEAK  5(7Q21.13) WILD-TYPE"   "AMP PEAK  5(7Q21.13) MUTATED" 
                    TCGA-HZ-8315                     TCGA-HZ-8317 
"AMP PEAK  5(7Q21.13) WILD-TYPE" "AMP PEAK  5(7Q21.13) WILD-TYPE" 
                    TCGA-HZ-8519                     TCGA-HZ-8636 
"AMP PEAK  5(7Q21.13) WILD-TYPE"   "AMP PEAK  5(7Q21.13) MUTATED" 
                    TCGA-HZ-8638                     TCGA-HZ-A49G 
"AMP PEAK  5(7Q21.13) WILD-TYPE" "AMP PEAK  5(7Q21.13) WILD-TYPE" 
                    TCGA-HZ-A49H                     TCGA-HZ-A4BH 
"AMP PEAK  5(7Q21.13) WILD-TYPE"   "AMP PEAK  5(7Q21.13) MUTATED" 
                    TCGA-HZ-A4BK                     TCGA-IB-7644 
"AMP PEAK  5(7Q21.13) WILD-TYPE" "AMP PEAK  5(7Q21.13) WILD-TYPE" 
                    TCGA-IB-7645                     TCGA-IB-7646 
  "AMP PEAK  5(7Q21.13) MUTATED" "AMP PEAK  5(7Q21.13) WILD-TYPE" 
                    TCGA-IB-7647                     TCGA-IB-7649 
"AMP PEAK  5(7Q21.13) WILD-TYPE" "AMP PEAK  5(7Q21.13) WILD-TYPE" 
                    TCGA-IB-7651                     TCGA-IB-7652 
"AMP PEAK  5(7Q21.13) WILD-TYPE"   "AMP PEAK  5(7Q21.13) MUTATED" 
                    TCGA-IB-7885                     TCGA-IB-7886 
"AMP PEAK  5(7Q21.13) WILD-TYPE"   "AMP PEAK  5(7Q21.13) MUTATED" 
                    TCGA-IB-7887                     TCGA-IB-7888 
"AMP PEAK  5(7Q21.13) WILD-TYPE" "AMP PEAK  5(7Q21.13) WILD-TYPE" 
                    TCGA-IB-7889                     TCGA-IB-7890 
  "AMP PEAK  5(7Q21.13) MUTATED" "AMP PEAK  5(7Q21.13) WILD-TYPE" 
                    TCGA-IB-7891                     TCGA-IB-7893 
"AMP PEAK  5(7Q21.13) WILD-TYPE"   "AMP PEAK  5(7Q21.13) MUTATED" 
                    TCGA-IB-7897                     TCGA-IB-8126 
"AMP PEAK  5(7Q21.13) WILD-TYPE" "AMP PEAK  5(7Q21.13) WILD-TYPE" 
                    TCGA-IB-8127                     TCGA-IB-A5SO 
  "AMP PEAK  5(7Q21.13) MUTATED" "AMP PEAK  5(7Q21.13) WILD-TYPE" 
                    TCGA-IB-A5SP                     TCGA-IB-A5SQ 
  "AMP PEAK  5(7Q21.13) MUTATED" "AMP PEAK  5(7Q21.13) WILD-TYPE" 
                    TCGA-IB-A5SS                     TCGA-IB-A5ST 
"AMP PEAK  5(7Q21.13) WILD-TYPE" "AMP PEAK  5(7Q21.13) WILD-TYPE" 
[1] "hr=" "1.4"
D3V2, continuous
                                vv
clus                             STAGE IA STAGE IB STAGE IIA STAGE IIB
  AMP PEAK  5(7Q21.13) MUTATED          0        0         2        11
  AMP PEAK  5(7Q21.13) WILD-TYPE        2        3         5        30
                                vv
clus                             STAGE III STAGE IV
  AMP PEAK  5(7Q21.13) MUTATED           0        1
  AMP PEAK  5(7Q21.13) WILD-TYPE         2        1
D3V3, multiclass
                                vv
clus                             T1+T2 T3+T4
  AMP PEAK  5(7Q21.13) MUTATED       0    14
  AMP PEAK  5(7Q21.13) WILD-TYPE     6    37
D3V4, multiclass
       clus
vv      AMP PEAK  5(7Q21.13) MUTATED AMP PEAK  5(7Q21.13) WILD-TYPE
  T1+T2                            0                              6
  T3+T4                           14                             37
D3V5, binary
                                cls
clus                              0  1
  AMP PEAK  5(7Q21.13) MUTATED    3 11
  AMP PEAK  5(7Q21.13) WILD-TYPE 11 32
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  5(7Q21.13) MUTATED      3   11
  AMP PEAK  5(7Q21.13) WILD-TYPE   11   32
   clus
vv  AMP PEAK  5(7Q21.13) MUTATED AMP PEAK  5(7Q21.13) WILD-TYPE
  0                            3                             11
  1                           11                             32
                                vv
clus                             M0 M1 MX
  AMP PEAK  5(7Q21.13) MUTATED    9  1  4
  AMP PEAK  5(7Q21.13) WILD-TYPE 23  1 19
D3V6, multiclass
    clus
vv   AMP PEAK  5(7Q21.13) MUTATED AMP PEAK  5(7Q21.13) WILD-TYPE
  M0                            9                             23
  M1                            1                              1
  MX                            4                             19
D3V7, binary
                                cls
clus                              0  1
  AMP PEAK  5(7Q21.13) MUTATED    6  8
  AMP PEAK  5(7Q21.13) WILD-TYPE 25 18
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  5(7Q21.13) MUTATED      6    8
  AMP PEAK  5(7Q21.13) WILD-TYPE   25   18
        clus
vv       AMP PEAK  5(7Q21.13) MUTATED AMP PEAK  5(7Q21.13) WILD-TYPE
  FEMALE                            6                             25
  MALE                              8                             18
                                vv
clus                             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  AMP PEAK  5(7Q21.13) MUTATED                                    13
  AMP PEAK  5(7Q21.13) WILD-TYPE                                  38
                                vv
clus                             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  AMP PEAK  5(7Q21.13) MUTATED                                       1
  AMP PEAK  5(7Q21.13) WILD-TYPE                                     3
                                vv
clus                             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  AMP PEAK  5(7Q21.13) MUTATED                                                  0
  AMP PEAK  5(7Q21.13) WILD-TYPE                                                1
D3V8, multiclass
                                                  clus
vv                                                 AMP PEAK  5(7Q21.13) MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                        13
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                       1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                            0
                                                  clus
vv                                                 AMP PEAK  5(7Q21.13) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                          38
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                         3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                              1
D3V9, continuous
D3V10, continuous
                                vv
clus                             R0 R1 RX
  AMP PEAK  5(7Q21.13) MUTATED    4  7  2
  AMP PEAK  5(7Q21.13) WILD-TYPE 28 14  0
D3V11, multiclass
    clus
vv   AMP PEAK  5(7Q21.13) MUTATED AMP PEAK  5(7Q21.13) WILD-TYPE
  R0                            4                             28
  R1                            7                             14
  RX                            2                              0
D3V12, continuous

Clustering(4) Variable = AMP PEAK  6(7Q22.1) MUTATION ANALYSIS
D4V1, survival
                               sevent
clus2                            0  1
  AMP PEAK  6(7Q22.1) MUTATED    9  5
  AMP PEAK  6(7Q22.1) WILD-TYPE 26 14
  AMP PEAK  6(7Q22.1) MUTATED AMP PEAK  6(7Q22.1) WILD-TYPE 
                           14                            40 
  AMP PEAK  6(7Q22.1) MUTATED AMP PEAK  6(7Q22.1) WILD-TYPE 
                            5                            14 
$`AMP PEAK  6(7Q22.1) MUTATED`
TCGA-FB-A545 TCGA-H6-8124 TCGA-HZ-7289 TCGA-HZ-7926 TCGA-HZ-8005 TCGA-HZ-8636 
        0.03        12.89         7.86         0.26         3.91         0.16 
TCGA-HZ-A4BH TCGA-IB-7645 TCGA-IB-7652 TCGA-IB-7886 TCGA-IB-7889 TCGA-IB-7893 
        5.98        49.38        15.65         4.04        15.78         3.85 
TCGA-IB-8127 TCGA-IB-A5SP 
       17.13         9.83 

$`AMP PEAK  6(7Q22.1) WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.96        11.84         7.07         5.03         5.19 
TCGA-FB-A4P5 TCGA-H6-A45N TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 
        0.13         7.63         0.92         0.66         0.13         0.26 
TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8315 
       12.13        12.03         0.62         0.99         0.69         0.92 
TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BK 
        0.49         0.10         2.96         0.76         1.02         1.51 
TCGA-IB-7644 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7885 
       11.41         4.77        21.86        15.35        19.82        27.98 
TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7897 TCGA-IB-8126 
        3.58        43.79        19.66        16.04        15.95         0.56 
TCGA-IB-A5SO TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST 
       10.82         7.20        15.12         0.26 

  AMP PEAK  6(7Q22.1) MUTATED AMP PEAK  6(7Q22.1) WILD-TYPE 
                         0.03                          0.10 
  AMP PEAK  6(7Q22.1) MUTATED AMP PEAK  6(7Q22.1) WILD-TYPE 
                        49.38                         43.79 
  AMP PEAK  6(7Q22.1) MUTATED AMP PEAK  6(7Q22.1) WILD-TYPE 
                         6.92                          5.11 
[1] "0.0 - 49.4 (6.9)" "0.1 - 43.8 (5.1)"
                   TCGA-F2-6879                    TCGA-F2-6880 
"AMP PEAK  6(7Q22.1) WILD-TYPE" "AMP PEAK  6(7Q22.1) WILD-TYPE" 
                   TCGA-F2-7273                    TCGA-F2-7276 
"AMP PEAK  6(7Q22.1) WILD-TYPE" "AMP PEAK  6(7Q22.1) WILD-TYPE" 
                   TCGA-F2-A44G                    TCGA-F2-A44H 
"AMP PEAK  6(7Q22.1) WILD-TYPE" "AMP PEAK  6(7Q22.1) WILD-TYPE" 
                   TCGA-FB-A4P5                    TCGA-FB-A545 
"AMP PEAK  6(7Q22.1) WILD-TYPE"   "AMP PEAK  6(7Q22.1) MUTATED" 
                   TCGA-H6-8124                    TCGA-H6-A45N 
  "AMP PEAK  6(7Q22.1) MUTATED" "AMP PEAK  6(7Q22.1) WILD-TYPE" 
                   TCGA-HZ-7289                    TCGA-HZ-7918 
  "AMP PEAK  6(7Q22.1) MUTATED" "AMP PEAK  6(7Q22.1) WILD-TYPE" 
                   TCGA-HZ-7919                    TCGA-HZ-7922 
"AMP PEAK  6(7Q22.1) WILD-TYPE" "AMP PEAK  6(7Q22.1) WILD-TYPE" 
                   TCGA-HZ-7923                    TCGA-HZ-7924 
"AMP PEAK  6(7Q22.1) WILD-TYPE" "AMP PEAK  6(7Q22.1) WILD-TYPE" 
                   TCGA-HZ-7925                    TCGA-HZ-7926 
"AMP PEAK  6(7Q22.1) WILD-TYPE"   "AMP PEAK  6(7Q22.1) MUTATED" 
                   TCGA-HZ-8001                    TCGA-HZ-8002 
"AMP PEAK  6(7Q22.1) WILD-TYPE" "AMP PEAK  6(7Q22.1) WILD-TYPE" 
                   TCGA-HZ-8003                    TCGA-HZ-8005 
"AMP PEAK  6(7Q22.1) WILD-TYPE"   "AMP PEAK  6(7Q22.1) MUTATED" 
                   TCGA-HZ-8315                    TCGA-HZ-8317 
"AMP PEAK  6(7Q22.1) WILD-TYPE" "AMP PEAK  6(7Q22.1) WILD-TYPE" 
                   TCGA-HZ-8519                    TCGA-HZ-8636 
"AMP PEAK  6(7Q22.1) WILD-TYPE"   "AMP PEAK  6(7Q22.1) MUTATED" 
                   TCGA-HZ-8638                    TCGA-HZ-A49G 
"AMP PEAK  6(7Q22.1) WILD-TYPE" "AMP PEAK  6(7Q22.1) WILD-TYPE" 
                   TCGA-HZ-A49H                    TCGA-HZ-A4BH 
"AMP PEAK  6(7Q22.1) WILD-TYPE"   "AMP PEAK  6(7Q22.1) MUTATED" 
                   TCGA-HZ-A4BK                    TCGA-IB-7644 
"AMP PEAK  6(7Q22.1) WILD-TYPE" "AMP PEAK  6(7Q22.1) WILD-TYPE" 
                   TCGA-IB-7645                    TCGA-IB-7646 
  "AMP PEAK  6(7Q22.1) MUTATED" "AMP PEAK  6(7Q22.1) WILD-TYPE" 
                   TCGA-IB-7647                    TCGA-IB-7649 
"AMP PEAK  6(7Q22.1) WILD-TYPE" "AMP PEAK  6(7Q22.1) WILD-TYPE" 
                   TCGA-IB-7651                    TCGA-IB-7652 
"AMP PEAK  6(7Q22.1) WILD-TYPE"   "AMP PEAK  6(7Q22.1) MUTATED" 
                   TCGA-IB-7885                    TCGA-IB-7886 
"AMP PEAK  6(7Q22.1) WILD-TYPE"   "AMP PEAK  6(7Q22.1) MUTATED" 
                   TCGA-IB-7887                    TCGA-IB-7888 
"AMP PEAK  6(7Q22.1) WILD-TYPE" "AMP PEAK  6(7Q22.1) WILD-TYPE" 
                   TCGA-IB-7889                    TCGA-IB-7890 
  "AMP PEAK  6(7Q22.1) MUTATED" "AMP PEAK  6(7Q22.1) WILD-TYPE" 
                   TCGA-IB-7891                    TCGA-IB-7893 
"AMP PEAK  6(7Q22.1) WILD-TYPE"   "AMP PEAK  6(7Q22.1) MUTATED" 
                   TCGA-IB-7897                    TCGA-IB-8126 
"AMP PEAK  6(7Q22.1) WILD-TYPE" "AMP PEAK  6(7Q22.1) WILD-TYPE" 
                   TCGA-IB-8127                    TCGA-IB-A5SO 
  "AMP PEAK  6(7Q22.1) MUTATED" "AMP PEAK  6(7Q22.1) WILD-TYPE" 
                   TCGA-IB-A5SP                    TCGA-IB-A5SQ 
  "AMP PEAK  6(7Q22.1) MUTATED" "AMP PEAK  6(7Q22.1) WILD-TYPE" 
                   TCGA-IB-A5SS                    TCGA-IB-A5ST 
"AMP PEAK  6(7Q22.1) WILD-TYPE" "AMP PEAK  6(7Q22.1) WILD-TYPE" 
                   TCGA-F2-6879                    TCGA-F2-6880 
"AMP PEAK  6(7Q22.1) WILD-TYPE" "AMP PEAK  6(7Q22.1) WILD-TYPE" 
                   TCGA-F2-7273                    TCGA-F2-7276 
"AMP PEAK  6(7Q22.1) WILD-TYPE" "AMP PEAK  6(7Q22.1) WILD-TYPE" 
                   TCGA-F2-A44G                    TCGA-F2-A44H 
"AMP PEAK  6(7Q22.1) WILD-TYPE" "AMP PEAK  6(7Q22.1) WILD-TYPE" 
                   TCGA-FB-A4P5                    TCGA-FB-A545 
"AMP PEAK  6(7Q22.1) WILD-TYPE"   "AMP PEAK  6(7Q22.1) MUTATED" 
                   TCGA-H6-8124                    TCGA-H6-A45N 
  "AMP PEAK  6(7Q22.1) MUTATED" "AMP PEAK  6(7Q22.1) WILD-TYPE" 
                   TCGA-HZ-7289                    TCGA-HZ-7918 
  "AMP PEAK  6(7Q22.1) MUTATED" "AMP PEAK  6(7Q22.1) WILD-TYPE" 
                   TCGA-HZ-7919                    TCGA-HZ-7922 
"AMP PEAK  6(7Q22.1) WILD-TYPE" "AMP PEAK  6(7Q22.1) WILD-TYPE" 
                   TCGA-HZ-7923                    TCGA-HZ-7924 
"AMP PEAK  6(7Q22.1) WILD-TYPE" "AMP PEAK  6(7Q22.1) WILD-TYPE" 
                   TCGA-HZ-7925                    TCGA-HZ-7926 
"AMP PEAK  6(7Q22.1) WILD-TYPE"   "AMP PEAK  6(7Q22.1) MUTATED" 
                   TCGA-HZ-8001                    TCGA-HZ-8002 
"AMP PEAK  6(7Q22.1) WILD-TYPE" "AMP PEAK  6(7Q22.1) WILD-TYPE" 
                   TCGA-HZ-8003                    TCGA-HZ-8005 
"AMP PEAK  6(7Q22.1) WILD-TYPE"   "AMP PEAK  6(7Q22.1) MUTATED" 
                   TCGA-HZ-8315                    TCGA-HZ-8317 
"AMP PEAK  6(7Q22.1) WILD-TYPE" "AMP PEAK  6(7Q22.1) WILD-TYPE" 
                   TCGA-HZ-8519                    TCGA-HZ-8636 
"AMP PEAK  6(7Q22.1) WILD-TYPE"   "AMP PEAK  6(7Q22.1) MUTATED" 
                   TCGA-HZ-8638                    TCGA-HZ-A49G 
"AMP PEAK  6(7Q22.1) WILD-TYPE" "AMP PEAK  6(7Q22.1) WILD-TYPE" 
                   TCGA-HZ-A49H                    TCGA-HZ-A4BH 
"AMP PEAK  6(7Q22.1) WILD-TYPE"   "AMP PEAK  6(7Q22.1) MUTATED" 
                   TCGA-HZ-A4BK                    TCGA-IB-7644 
"AMP PEAK  6(7Q22.1) WILD-TYPE" "AMP PEAK  6(7Q22.1) WILD-TYPE" 
                   TCGA-IB-7645                    TCGA-IB-7646 
  "AMP PEAK  6(7Q22.1) MUTATED" "AMP PEAK  6(7Q22.1) WILD-TYPE" 
                   TCGA-IB-7647                    TCGA-IB-7649 
"AMP PEAK  6(7Q22.1) WILD-TYPE" "AMP PEAK  6(7Q22.1) WILD-TYPE" 
                   TCGA-IB-7651                    TCGA-IB-7652 
"AMP PEAK  6(7Q22.1) WILD-TYPE"   "AMP PEAK  6(7Q22.1) MUTATED" 
                   TCGA-IB-7885                    TCGA-IB-7886 
"AMP PEAK  6(7Q22.1) WILD-TYPE"   "AMP PEAK  6(7Q22.1) MUTATED" 
                   TCGA-IB-7887                    TCGA-IB-7888 
"AMP PEAK  6(7Q22.1) WILD-TYPE" "AMP PEAK  6(7Q22.1) WILD-TYPE" 
                   TCGA-IB-7889                    TCGA-IB-7890 
  "AMP PEAK  6(7Q22.1) MUTATED" "AMP PEAK  6(7Q22.1) WILD-TYPE" 
                   TCGA-IB-7891                    TCGA-IB-7893 
"AMP PEAK  6(7Q22.1) WILD-TYPE"   "AMP PEAK  6(7Q22.1) MUTATED" 
                   TCGA-IB-7897                    TCGA-IB-8126 
"AMP PEAK  6(7Q22.1) WILD-TYPE" "AMP PEAK  6(7Q22.1) WILD-TYPE" 
                   TCGA-IB-8127                    TCGA-IB-A5SO 
  "AMP PEAK  6(7Q22.1) MUTATED" "AMP PEAK  6(7Q22.1) WILD-TYPE" 
                   TCGA-IB-A5SP                    TCGA-IB-A5SQ 
  "AMP PEAK  6(7Q22.1) MUTATED" "AMP PEAK  6(7Q22.1) WILD-TYPE" 
                   TCGA-IB-A5SS                    TCGA-IB-A5ST 
"AMP PEAK  6(7Q22.1) WILD-TYPE" "AMP PEAK  6(7Q22.1) WILD-TYPE" 
                   TCGA-F2-6879                    TCGA-F2-6880 
"AMP PEAK  6(7Q22.1) WILD-TYPE" "AMP PEAK  6(7Q22.1) WILD-TYPE" 
                   TCGA-F2-7273                    TCGA-F2-7276 
"AMP PEAK  6(7Q22.1) WILD-TYPE" "AMP PEAK  6(7Q22.1) WILD-TYPE" 
                   TCGA-F2-A44G                    TCGA-F2-A44H 
"AMP PEAK  6(7Q22.1) WILD-TYPE" "AMP PEAK  6(7Q22.1) WILD-TYPE" 
                   TCGA-FB-A4P5                    TCGA-FB-A545 
"AMP PEAK  6(7Q22.1) WILD-TYPE"   "AMP PEAK  6(7Q22.1) MUTATED" 
                   TCGA-H6-8124                    TCGA-H6-A45N 
  "AMP PEAK  6(7Q22.1) MUTATED" "AMP PEAK  6(7Q22.1) WILD-TYPE" 
                   TCGA-HZ-7289                    TCGA-HZ-7918 
  "AMP PEAK  6(7Q22.1) MUTATED" "AMP PEAK  6(7Q22.1) WILD-TYPE" 
                   TCGA-HZ-7919                    TCGA-HZ-7922 
"AMP PEAK  6(7Q22.1) WILD-TYPE" "AMP PEAK  6(7Q22.1) WILD-TYPE" 
                   TCGA-HZ-7923                    TCGA-HZ-7924 
"AMP PEAK  6(7Q22.1) WILD-TYPE" "AMP PEAK  6(7Q22.1) WILD-TYPE" 
                   TCGA-HZ-7925                    TCGA-HZ-7926 
"AMP PEAK  6(7Q22.1) WILD-TYPE"   "AMP PEAK  6(7Q22.1) MUTATED" 
                   TCGA-HZ-8001                    TCGA-HZ-8002 
"AMP PEAK  6(7Q22.1) WILD-TYPE" "AMP PEAK  6(7Q22.1) WILD-TYPE" 
                   TCGA-HZ-8003                    TCGA-HZ-8005 
"AMP PEAK  6(7Q22.1) WILD-TYPE"   "AMP PEAK  6(7Q22.1) MUTATED" 
                   TCGA-HZ-8315                    TCGA-HZ-8317 
"AMP PEAK  6(7Q22.1) WILD-TYPE" "AMP PEAK  6(7Q22.1) WILD-TYPE" 
                   TCGA-HZ-8519                    TCGA-HZ-8636 
"AMP PEAK  6(7Q22.1) WILD-TYPE"   "AMP PEAK  6(7Q22.1) MUTATED" 
                   TCGA-HZ-8638                    TCGA-HZ-A49G 
"AMP PEAK  6(7Q22.1) WILD-TYPE" "AMP PEAK  6(7Q22.1) WILD-TYPE" 
                   TCGA-HZ-A49H                    TCGA-HZ-A4BH 
"AMP PEAK  6(7Q22.1) WILD-TYPE"   "AMP PEAK  6(7Q22.1) MUTATED" 
                   TCGA-HZ-A4BK                    TCGA-IB-7644 
"AMP PEAK  6(7Q22.1) WILD-TYPE" "AMP PEAK  6(7Q22.1) WILD-TYPE" 
                   TCGA-IB-7645                    TCGA-IB-7646 
  "AMP PEAK  6(7Q22.1) MUTATED" "AMP PEAK  6(7Q22.1) WILD-TYPE" 
                   TCGA-IB-7647                    TCGA-IB-7649 
"AMP PEAK  6(7Q22.1) WILD-TYPE" "AMP PEAK  6(7Q22.1) WILD-TYPE" 
                   TCGA-IB-7651                    TCGA-IB-7652 
"AMP PEAK  6(7Q22.1) WILD-TYPE"   "AMP PEAK  6(7Q22.1) MUTATED" 
                   TCGA-IB-7885                    TCGA-IB-7886 
"AMP PEAK  6(7Q22.1) WILD-TYPE"   "AMP PEAK  6(7Q22.1) MUTATED" 
                   TCGA-IB-7887                    TCGA-IB-7888 
"AMP PEAK  6(7Q22.1) WILD-TYPE" "AMP PEAK  6(7Q22.1) WILD-TYPE" 
                   TCGA-IB-7889                    TCGA-IB-7890 
  "AMP PEAK  6(7Q22.1) MUTATED" "AMP PEAK  6(7Q22.1) WILD-TYPE" 
                   TCGA-IB-7891                    TCGA-IB-7893 
"AMP PEAK  6(7Q22.1) WILD-TYPE"   "AMP PEAK  6(7Q22.1) MUTATED" 
                   TCGA-IB-7897                    TCGA-IB-8126 
"AMP PEAK  6(7Q22.1) WILD-TYPE" "AMP PEAK  6(7Q22.1) WILD-TYPE" 
                   TCGA-IB-8127                    TCGA-IB-A5SO 
  "AMP PEAK  6(7Q22.1) MUTATED" "AMP PEAK  6(7Q22.1) WILD-TYPE" 
                   TCGA-IB-A5SP                    TCGA-IB-A5SQ 
  "AMP PEAK  6(7Q22.1) MUTATED" "AMP PEAK  6(7Q22.1) WILD-TYPE" 
                   TCGA-IB-A5SS                    TCGA-IB-A5ST 
"AMP PEAK  6(7Q22.1) WILD-TYPE" "AMP PEAK  6(7Q22.1) WILD-TYPE" 
[1] "hr=" "1.4"
D4V2, continuous
                               vv
clus                            STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III
  AMP PEAK  6(7Q22.1) MUTATED          0        0         2        11         0
  AMP PEAK  6(7Q22.1) WILD-TYPE        2        3         5        30         2
                               vv
clus                            STAGE IV
  AMP PEAK  6(7Q22.1) MUTATED          1
  AMP PEAK  6(7Q22.1) WILD-TYPE        1
D4V3, multiclass
                               vv
clus                            T1+T2 T3+T4
  AMP PEAK  6(7Q22.1) MUTATED       0    14
  AMP PEAK  6(7Q22.1) WILD-TYPE     6    37
D4V4, multiclass
       clus
vv      AMP PEAK  6(7Q22.1) MUTATED AMP PEAK  6(7Q22.1) WILD-TYPE
  T1+T2                           0                             6
  T3+T4                          14                            37
D4V5, binary
                               cls
clus                             0  1
  AMP PEAK  6(7Q22.1) MUTATED    3 11
  AMP PEAK  6(7Q22.1) WILD-TYPE 11 32
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  6(7Q22.1) MUTATED      3   11
  AMP PEAK  6(7Q22.1) WILD-TYPE   11   32
   clus
vv  AMP PEAK  6(7Q22.1) MUTATED AMP PEAK  6(7Q22.1) WILD-TYPE
  0                           3                            11
  1                          11                            32
                               vv
clus                            M0 M1 MX
  AMP PEAK  6(7Q22.1) MUTATED    9  1  4
  AMP PEAK  6(7Q22.1) WILD-TYPE 23  1 19
D4V6, multiclass
    clus
vv   AMP PEAK  6(7Q22.1) MUTATED AMP PEAK  6(7Q22.1) WILD-TYPE
  M0                           9                            23
  M1                           1                             1
  MX                           4                            19
D4V7, binary
                               cls
clus                             0  1
  AMP PEAK  6(7Q22.1) MUTATED    6  8
  AMP PEAK  6(7Q22.1) WILD-TYPE 25 18
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  6(7Q22.1) MUTATED      6    8
  AMP PEAK  6(7Q22.1) WILD-TYPE   25   18
        clus
vv       AMP PEAK  6(7Q22.1) MUTATED AMP PEAK  6(7Q22.1) WILD-TYPE
  FEMALE                           6                            25
  MALE                             8                            18
                               vv
clus                            PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  AMP PEAK  6(7Q22.1) MUTATED                                    13
  AMP PEAK  6(7Q22.1) WILD-TYPE                                  38
                               vv
clus                            PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  AMP PEAK  6(7Q22.1) MUTATED                                       1
  AMP PEAK  6(7Q22.1) WILD-TYPE                                     3
                               vv
clus                            PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  AMP PEAK  6(7Q22.1) MUTATED                                                  0
  AMP PEAK  6(7Q22.1) WILD-TYPE                                                1
D4V8, multiclass
                                                  clus
vv                                                 AMP PEAK  6(7Q22.1) MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                       13
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                      1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                           0
                                                  clus
vv                                                 AMP PEAK  6(7Q22.1) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                         38
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                        3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                             1
D4V9, continuous
D4V10, continuous
                               vv
clus                            R0 R1 RX
  AMP PEAK  6(7Q22.1) MUTATED    4  7  2
  AMP PEAK  6(7Q22.1) WILD-TYPE 28 14  0
D4V11, multiclass
    clus
vv   AMP PEAK  6(7Q22.1) MUTATED AMP PEAK  6(7Q22.1) WILD-TYPE
  R0                           4                            28
  R1                           7                            14
  RX                           2                             0
D4V12, continuous

Clustering(5) Variable = AMP PEAK  7(8Q24.21) MUTATION ANALYSIS
D5V1, survival
                                sevent
clus2                             0  1
  AMP PEAK  7(8Q24.21) MUTATED   10 10
  AMP PEAK  7(8Q24.21) WILD-TYPE 25  9
  AMP PEAK  7(8Q24.21) MUTATED AMP PEAK  7(8Q24.21) WILD-TYPE 
                            20                             34 
  AMP PEAK  7(8Q24.21) MUTATED AMP PEAK  7(8Q24.21) WILD-TYPE 
                            10                              9 
$`AMP PEAK  7(8Q24.21) MUTATED`
TCGA-F2-6879 TCGA-FB-A545 TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7922 TCGA-HZ-7925 
       10.98         0.03         7.86         0.92         0.13        12.03 
TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8636 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 
        3.91         0.92         0.16         4.77        21.86        15.35 
TCGA-IB-7652 TCGA-IB-7886 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7893 TCGA-IB-8127 
       15.65         4.04        15.78        19.66         3.85        17.13 
TCGA-IB-A5SP TCGA-IB-A5SS 
        9.83        15.12 

$`AMP PEAK  7(8Q24.21) WILD-TYPE`
TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A4P5 
        9.96        11.84         7.07         5.03         5.19         0.13 
TCGA-H6-8124 TCGA-H6-A45N TCGA-HZ-7919 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7926 
       12.89         7.63         0.66         0.26        12.13         0.26 
TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8638 
        0.62         0.99         0.69         0.49         0.10         2.96 
TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 
        0.76         1.02         5.98         1.51        11.41        49.38 
TCGA-IB-7651 TCGA-IB-7885 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7891 TCGA-IB-7897 
       19.82        27.98         3.58        43.79        16.04        15.95 
TCGA-IB-8126 TCGA-IB-A5SO TCGA-IB-A5SQ TCGA-IB-A5ST 
        0.56        10.82         7.20         0.26 

  AMP PEAK  7(8Q24.21) MUTATED AMP PEAK  7(8Q24.21) WILD-TYPE 
                          0.03                           0.10 
  AMP PEAK  7(8Q24.21) MUTATED AMP PEAK  7(8Q24.21) WILD-TYPE 
                         21.86                          49.38 
  AMP PEAK  7(8Q24.21) MUTATED AMP PEAK  7(8Q24.21) WILD-TYPE 
                         8.845                          5.110 
[1] "0.0 - 21.9 (8.8)" "0.1 - 49.4 (5.1)"
                    TCGA-F2-6879                     TCGA-F2-6880 
  "AMP PEAK  7(8Q24.21) MUTATED" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"AMP PEAK  7(8Q24.21) WILD-TYPE" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
"AMP PEAK  7(8Q24.21) WILD-TYPE" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"AMP PEAK  7(8Q24.21) WILD-TYPE"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
"AMP PEAK  7(8Q24.21) WILD-TYPE" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-HZ-7289                     TCGA-HZ-7918 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-HZ-7919                     TCGA-HZ-7922 
"AMP PEAK  7(8Q24.21) WILD-TYPE"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-HZ-7923                     TCGA-HZ-7924 
"AMP PEAK  7(8Q24.21) WILD-TYPE" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-HZ-7925                     TCGA-HZ-7926 
  "AMP PEAK  7(8Q24.21) MUTATED" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-HZ-8001                     TCGA-HZ-8002 
"AMP PEAK  7(8Q24.21) WILD-TYPE" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-HZ-8003                     TCGA-HZ-8005 
"AMP PEAK  7(8Q24.21) WILD-TYPE"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-HZ-8315                     TCGA-HZ-8317 
  "AMP PEAK  7(8Q24.21) MUTATED" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-HZ-8519                     TCGA-HZ-8636 
"AMP PEAK  7(8Q24.21) WILD-TYPE"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-HZ-8638                     TCGA-HZ-A49G 
"AMP PEAK  7(8Q24.21) WILD-TYPE" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-HZ-A49H                     TCGA-HZ-A4BH 
"AMP PEAK  7(8Q24.21) WILD-TYPE" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-HZ-A4BK                     TCGA-IB-7644 
"AMP PEAK  7(8Q24.21) WILD-TYPE" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-IB-7645                     TCGA-IB-7646 
"AMP PEAK  7(8Q24.21) WILD-TYPE"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-IB-7647                     TCGA-IB-7649 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-IB-7651                     TCGA-IB-7652 
"AMP PEAK  7(8Q24.21) WILD-TYPE"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-IB-7885                     TCGA-IB-7886 
"AMP PEAK  7(8Q24.21) WILD-TYPE"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-IB-7887                     TCGA-IB-7888 
"AMP PEAK  7(8Q24.21) WILD-TYPE" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-IB-7889                     TCGA-IB-7890 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-IB-7891                     TCGA-IB-7893 
"AMP PEAK  7(8Q24.21) WILD-TYPE"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-IB-7897                     TCGA-IB-8126 
"AMP PEAK  7(8Q24.21) WILD-TYPE" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-IB-8127                     TCGA-IB-A5SO 
  "AMP PEAK  7(8Q24.21) MUTATED" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-IB-A5SP                     TCGA-IB-A5SQ 
  "AMP PEAK  7(8Q24.21) MUTATED" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-IB-A5SS                     TCGA-IB-A5ST 
  "AMP PEAK  7(8Q24.21) MUTATED" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-F2-6879                     TCGA-F2-6880 
  "AMP PEAK  7(8Q24.21) MUTATED" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"AMP PEAK  7(8Q24.21) WILD-TYPE" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
"AMP PEAK  7(8Q24.21) WILD-TYPE" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"AMP PEAK  7(8Q24.21) WILD-TYPE"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
"AMP PEAK  7(8Q24.21) WILD-TYPE" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-HZ-7289                     TCGA-HZ-7918 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-HZ-7919                     TCGA-HZ-7922 
"AMP PEAK  7(8Q24.21) WILD-TYPE"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-HZ-7923                     TCGA-HZ-7924 
"AMP PEAK  7(8Q24.21) WILD-TYPE" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-HZ-7925                     TCGA-HZ-7926 
  "AMP PEAK  7(8Q24.21) MUTATED" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-HZ-8001                     TCGA-HZ-8002 
"AMP PEAK  7(8Q24.21) WILD-TYPE" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-HZ-8003                     TCGA-HZ-8005 
"AMP PEAK  7(8Q24.21) WILD-TYPE"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-HZ-8315                     TCGA-HZ-8317 
  "AMP PEAK  7(8Q24.21) MUTATED" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-HZ-8519                     TCGA-HZ-8636 
"AMP PEAK  7(8Q24.21) WILD-TYPE"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-HZ-8638                     TCGA-HZ-A49G 
"AMP PEAK  7(8Q24.21) WILD-TYPE" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-HZ-A49H                     TCGA-HZ-A4BH 
"AMP PEAK  7(8Q24.21) WILD-TYPE" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-HZ-A4BK                     TCGA-IB-7644 
"AMP PEAK  7(8Q24.21) WILD-TYPE" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-IB-7645                     TCGA-IB-7646 
"AMP PEAK  7(8Q24.21) WILD-TYPE"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-IB-7647                     TCGA-IB-7649 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-IB-7651                     TCGA-IB-7652 
"AMP PEAK  7(8Q24.21) WILD-TYPE"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-IB-7885                     TCGA-IB-7886 
"AMP PEAK  7(8Q24.21) WILD-TYPE"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-IB-7887                     TCGA-IB-7888 
"AMP PEAK  7(8Q24.21) WILD-TYPE" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-IB-7889                     TCGA-IB-7890 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-IB-7891                     TCGA-IB-7893 
"AMP PEAK  7(8Q24.21) WILD-TYPE"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-IB-7897                     TCGA-IB-8126 
"AMP PEAK  7(8Q24.21) WILD-TYPE" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-IB-8127                     TCGA-IB-A5SO 
  "AMP PEAK  7(8Q24.21) MUTATED" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-IB-A5SP                     TCGA-IB-A5SQ 
  "AMP PEAK  7(8Q24.21) MUTATED" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-IB-A5SS                     TCGA-IB-A5ST 
  "AMP PEAK  7(8Q24.21) MUTATED" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-F2-6879                     TCGA-F2-6880 
  "AMP PEAK  7(8Q24.21) MUTATED" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"AMP PEAK  7(8Q24.21) WILD-TYPE" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
"AMP PEAK  7(8Q24.21) WILD-TYPE" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"AMP PEAK  7(8Q24.21) WILD-TYPE"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
"AMP PEAK  7(8Q24.21) WILD-TYPE" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-HZ-7289                     TCGA-HZ-7918 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-HZ-7919                     TCGA-HZ-7922 
"AMP PEAK  7(8Q24.21) WILD-TYPE"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-HZ-7923                     TCGA-HZ-7924 
"AMP PEAK  7(8Q24.21) WILD-TYPE" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-HZ-7925                     TCGA-HZ-7926 
  "AMP PEAK  7(8Q24.21) MUTATED" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-HZ-8001                     TCGA-HZ-8002 
"AMP PEAK  7(8Q24.21) WILD-TYPE" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-HZ-8003                     TCGA-HZ-8005 
"AMP PEAK  7(8Q24.21) WILD-TYPE"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-HZ-8315                     TCGA-HZ-8317 
  "AMP PEAK  7(8Q24.21) MUTATED" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-HZ-8519                     TCGA-HZ-8636 
"AMP PEAK  7(8Q24.21) WILD-TYPE"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-HZ-8638                     TCGA-HZ-A49G 
"AMP PEAK  7(8Q24.21) WILD-TYPE" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-HZ-A49H                     TCGA-HZ-A4BH 
"AMP PEAK  7(8Q24.21) WILD-TYPE" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-HZ-A4BK                     TCGA-IB-7644 
"AMP PEAK  7(8Q24.21) WILD-TYPE" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-IB-7645                     TCGA-IB-7646 
"AMP PEAK  7(8Q24.21) WILD-TYPE"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-IB-7647                     TCGA-IB-7649 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-IB-7651                     TCGA-IB-7652 
"AMP PEAK  7(8Q24.21) WILD-TYPE"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-IB-7885                     TCGA-IB-7886 
"AMP PEAK  7(8Q24.21) WILD-TYPE"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-IB-7887                     TCGA-IB-7888 
"AMP PEAK  7(8Q24.21) WILD-TYPE" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-IB-7889                     TCGA-IB-7890 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-IB-7891                     TCGA-IB-7893 
"AMP PEAK  7(8Q24.21) WILD-TYPE"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-IB-7897                     TCGA-IB-8126 
"AMP PEAK  7(8Q24.21) WILD-TYPE" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-IB-8127                     TCGA-IB-A5SO 
  "AMP PEAK  7(8Q24.21) MUTATED" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-IB-A5SP                     TCGA-IB-A5SQ 
  "AMP PEAK  7(8Q24.21) MUTATED" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-IB-A5SS                     TCGA-IB-A5ST 
  "AMP PEAK  7(8Q24.21) MUTATED" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
[1] "hr=" "2.1"
D5V2, continuous
                                vv
clus                             STAGE IA STAGE IB STAGE IIA STAGE IIB
  AMP PEAK  7(8Q24.21) MUTATED          0        1         3        16
  AMP PEAK  7(8Q24.21) WILD-TYPE        2        2         4        25
                                vv
clus                             STAGE III STAGE IV
  AMP PEAK  7(8Q24.21) MUTATED           0        1
  AMP PEAK  7(8Q24.21) WILD-TYPE         2        1
D5V3, multiclass
                                vv
clus                             T1+T2 T3+T4
  AMP PEAK  7(8Q24.21) MUTATED       1    20
  AMP PEAK  7(8Q24.21) WILD-TYPE     5    31
D5V4, multiclass
       clus
vv      AMP PEAK  7(8Q24.21) MUTATED AMP PEAK  7(8Q24.21) WILD-TYPE
  T1+T2                            1                              5
  T3+T4                           20                             31
D5V5, binary
                                cls
clus                              0  1
  AMP PEAK  7(8Q24.21) MUTATED    5 16
  AMP PEAK  7(8Q24.21) WILD-TYPE  9 27
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  7(8Q24.21) MUTATED      5   16
  AMP PEAK  7(8Q24.21) WILD-TYPE    9   27
   clus
vv  AMP PEAK  7(8Q24.21) MUTATED AMP PEAK  7(8Q24.21) WILD-TYPE
  0                            5                              9
  1                           16                             27
                                vv
clus                             M0 M1 MX
  AMP PEAK  7(8Q24.21) MUTATED   14  1  6
  AMP PEAK  7(8Q24.21) WILD-TYPE 18  1 17
D5V6, multiclass
    clus
vv   AMP PEAK  7(8Q24.21) MUTATED AMP PEAK  7(8Q24.21) WILD-TYPE
  M0                           14                             18
  M1                            1                              1
  MX                            6                             17
D5V7, binary
                                cls
clus                              0  1
  AMP PEAK  7(8Q24.21) MUTATED   10 11
  AMP PEAK  7(8Q24.21) WILD-TYPE 21 15
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  7(8Q24.21) MUTATED     10   11
  AMP PEAK  7(8Q24.21) WILD-TYPE   21   15
        clus
vv       AMP PEAK  7(8Q24.21) MUTATED AMP PEAK  7(8Q24.21) WILD-TYPE
  FEMALE                           10                             21
  MALE                             11                             15
                                vv
clus                             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  AMP PEAK  7(8Q24.21) MUTATED                                    19
  AMP PEAK  7(8Q24.21) WILD-TYPE                                  32
                                vv
clus                             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  AMP PEAK  7(8Q24.21) MUTATED                                       1
  AMP PEAK  7(8Q24.21) WILD-TYPE                                     3
                                vv
clus                             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  AMP PEAK  7(8Q24.21) MUTATED                                                  0
  AMP PEAK  7(8Q24.21) WILD-TYPE                                                1
D5V8, multiclass
                                                  clus
vv                                                 AMP PEAK  7(8Q24.21) MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                        19
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                       1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                            0
                                                  clus
vv                                                 AMP PEAK  7(8Q24.21) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                          32
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                         3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                              1
D5V9, continuous
D5V10, continuous
                                vv
clus                             R0 R1 RX
  AMP PEAK  7(8Q24.21) MUTATED    9 10  1
  AMP PEAK  7(8Q24.21) WILD-TYPE 23 11  1
D5V11, multiclass
    clus
vv   AMP PEAK  7(8Q24.21) MUTATED AMP PEAK  7(8Q24.21) WILD-TYPE
  R0                            9                             23
  R1                           10                             11
  RX                            1                              1
D5V12, continuous

Clustering(6) Variable = AMP PEAK  8(9P13.3) MUTATION ANALYSIS
D6V1, survival
                               sevent
clus2                            0  1
  AMP PEAK  8(9P13.3) MUTATED    3  2
  AMP PEAK  8(9P13.3) WILD-TYPE 32 17
  AMP PEAK  8(9P13.3) MUTATED AMP PEAK  8(9P13.3) WILD-TYPE 
                            5                            49 
  AMP PEAK  8(9P13.3) MUTATED AMP PEAK  8(9P13.3) WILD-TYPE 
                            2                            17 
$`AMP PEAK  8(9P13.3) MUTATED`
TCGA-HZ-7925 TCGA-HZ-8636 TCGA-IB-7646 TCGA-IB-7893 TCGA-IB-8126 
       12.03         0.16         4.77         3.85         0.56 

$`AMP PEAK  8(9P13.3) WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.96        11.84         7.07         5.03         5.19 
TCGA-FB-A4P5 TCGA-FB-A545 TCGA-H6-8124 TCGA-H6-A45N TCGA-HZ-7289 TCGA-HZ-7918 
        0.13         0.03        12.89         7.63         7.86         0.92 
TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7926 TCGA-HZ-8001 
        0.66         0.13         0.26        12.13         0.26         0.62 
TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8519 
        0.99         0.69         3.91         0.92         0.49         0.10 
TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 
        2.96         0.76         1.02         5.98         1.51        11.41 
TCGA-IB-7645 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 
       49.38        21.86        15.35        19.82        15.65        27.98 
TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 
        4.04         3.58        43.79        15.78        19.66        16.04 
TCGA-IB-7897 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS 
       15.95        17.13        10.82         9.83         7.20        15.12 
TCGA-IB-A5ST 
        0.26 

  AMP PEAK  8(9P13.3) MUTATED AMP PEAK  8(9P13.3) WILD-TYPE 
                         0.16                          0.03 
  AMP PEAK  8(9P13.3) MUTATED AMP PEAK  8(9P13.3) WILD-TYPE 
                        12.03                         49.38 
  AMP PEAK  8(9P13.3) MUTATED AMP PEAK  8(9P13.3) WILD-TYPE 
                         3.85                          7.07 
[1] "0.2 - 12.0 (3.9)" "0.0 - 49.4 (7.1)"
                   TCGA-F2-6879                    TCGA-F2-6880 
"AMP PEAK  8(9P13.3) WILD-TYPE" "AMP PEAK  8(9P13.3) WILD-TYPE" 
                   TCGA-F2-7273                    TCGA-F2-7276 
"AMP PEAK  8(9P13.3) WILD-TYPE" "AMP PEAK  8(9P13.3) WILD-TYPE" 
                   TCGA-F2-A44G                    TCGA-F2-A44H 
"AMP PEAK  8(9P13.3) WILD-TYPE" "AMP PEAK  8(9P13.3) WILD-TYPE" 
                   TCGA-FB-A4P5                    TCGA-FB-A545 
"AMP PEAK  8(9P13.3) WILD-TYPE" "AMP PEAK  8(9P13.3) WILD-TYPE" 
                   TCGA-H6-8124                    TCGA-H6-A45N 
"AMP PEAK  8(9P13.3) WILD-TYPE" "AMP PEAK  8(9P13.3) WILD-TYPE" 
                   TCGA-HZ-7289                    TCGA-HZ-7918 
"AMP PEAK  8(9P13.3) WILD-TYPE" "AMP PEAK  8(9P13.3) WILD-TYPE" 
                   TCGA-HZ-7919                    TCGA-HZ-7922 
"AMP PEAK  8(9P13.3) WILD-TYPE" "AMP PEAK  8(9P13.3) WILD-TYPE" 
                   TCGA-HZ-7923                    TCGA-HZ-7924 
"AMP PEAK  8(9P13.3) WILD-TYPE" "AMP PEAK  8(9P13.3) WILD-TYPE" 
                   TCGA-HZ-7925                    TCGA-HZ-7926 
  "AMP PEAK  8(9P13.3) MUTATED" "AMP PEAK  8(9P13.3) WILD-TYPE" 
                   TCGA-HZ-8001                    TCGA-HZ-8002 
"AMP PEAK  8(9P13.3) WILD-TYPE" "AMP PEAK  8(9P13.3) WILD-TYPE" 
                   TCGA-HZ-8003                    TCGA-HZ-8005 
"AMP PEAK  8(9P13.3) WILD-TYPE" "AMP PEAK  8(9P13.3) WILD-TYPE" 
                   TCGA-HZ-8315                    TCGA-HZ-8317 
"AMP PEAK  8(9P13.3) WILD-TYPE" "AMP PEAK  8(9P13.3) WILD-TYPE" 
                   TCGA-HZ-8519                    TCGA-HZ-8636 
"AMP PEAK  8(9P13.3) WILD-TYPE"   "AMP PEAK  8(9P13.3) MUTATED" 
                   TCGA-HZ-8638                    TCGA-HZ-A49G 
"AMP PEAK  8(9P13.3) WILD-TYPE" "AMP PEAK  8(9P13.3) WILD-TYPE" 
                   TCGA-HZ-A49H                    TCGA-HZ-A4BH 
"AMP PEAK  8(9P13.3) WILD-TYPE" "AMP PEAK  8(9P13.3) WILD-TYPE" 
                   TCGA-HZ-A4BK                    TCGA-IB-7644 
"AMP PEAK  8(9P13.3) WILD-TYPE" "AMP PEAK  8(9P13.3) WILD-TYPE" 
                   TCGA-IB-7645                    TCGA-IB-7646 
"AMP PEAK  8(9P13.3) WILD-TYPE"   "AMP PEAK  8(9P13.3) MUTATED" 
                   TCGA-IB-7647                    TCGA-IB-7649 
"AMP PEAK  8(9P13.3) WILD-TYPE" "AMP PEAK  8(9P13.3) WILD-TYPE" 
                   TCGA-IB-7651                    TCGA-IB-7652 
"AMP PEAK  8(9P13.3) WILD-TYPE" "AMP PEAK  8(9P13.3) WILD-TYPE" 
                   TCGA-IB-7885                    TCGA-IB-7886 
"AMP PEAK  8(9P13.3) WILD-TYPE" "AMP PEAK  8(9P13.3) WILD-TYPE" 
                   TCGA-IB-7887                    TCGA-IB-7888 
"AMP PEAK  8(9P13.3) WILD-TYPE" "AMP PEAK  8(9P13.3) WILD-TYPE" 
                   TCGA-IB-7889                    TCGA-IB-7890 
"AMP PEAK  8(9P13.3) WILD-TYPE" "AMP PEAK  8(9P13.3) WILD-TYPE" 
                   TCGA-IB-7891                    TCGA-IB-7893 
"AMP PEAK  8(9P13.3) WILD-TYPE"   "AMP PEAK  8(9P13.3) MUTATED" 
                   TCGA-IB-7897                    TCGA-IB-8126 
"AMP PEAK  8(9P13.3) WILD-TYPE"   "AMP PEAK  8(9P13.3) MUTATED" 
                   TCGA-IB-8127                    TCGA-IB-A5SO 
"AMP PEAK  8(9P13.3) WILD-TYPE" "AMP PEAK  8(9P13.3) WILD-TYPE" 
                   TCGA-IB-A5SP                    TCGA-IB-A5SQ 
"AMP PEAK  8(9P13.3) WILD-TYPE" "AMP PEAK  8(9P13.3) WILD-TYPE" 
                   TCGA-IB-A5SS                    TCGA-IB-A5ST 
"AMP PEAK  8(9P13.3) WILD-TYPE" "AMP PEAK  8(9P13.3) WILD-TYPE" 
                   TCGA-F2-6879                    TCGA-F2-6880 
"AMP PEAK  8(9P13.3) WILD-TYPE" "AMP PEAK  8(9P13.3) WILD-TYPE" 
                   TCGA-F2-7273                    TCGA-F2-7276 
"AMP PEAK  8(9P13.3) WILD-TYPE" "AMP PEAK  8(9P13.3) WILD-TYPE" 
                   TCGA-F2-A44G                    TCGA-F2-A44H 
"AMP PEAK  8(9P13.3) WILD-TYPE" "AMP PEAK  8(9P13.3) WILD-TYPE" 
                   TCGA-FB-A4P5                    TCGA-FB-A545 
"AMP PEAK  8(9P13.3) WILD-TYPE" "AMP PEAK  8(9P13.3) WILD-TYPE" 
                   TCGA-H6-8124                    TCGA-H6-A45N 
"AMP PEAK  8(9P13.3) WILD-TYPE" "AMP PEAK  8(9P13.3) WILD-TYPE" 
                   TCGA-HZ-7289                    TCGA-HZ-7918 
"AMP PEAK  8(9P13.3) WILD-TYPE" "AMP PEAK  8(9P13.3) WILD-TYPE" 
                   TCGA-HZ-7919                    TCGA-HZ-7922 
"AMP PEAK  8(9P13.3) WILD-TYPE" "AMP PEAK  8(9P13.3) WILD-TYPE" 
                   TCGA-HZ-7923                    TCGA-HZ-7924 
"AMP PEAK  8(9P13.3) WILD-TYPE" "AMP PEAK  8(9P13.3) WILD-TYPE" 
                   TCGA-HZ-7925                    TCGA-HZ-7926 
  "AMP PEAK  8(9P13.3) MUTATED" "AMP PEAK  8(9P13.3) WILD-TYPE" 
                   TCGA-HZ-8001                    TCGA-HZ-8002 
"AMP PEAK  8(9P13.3) WILD-TYPE" "AMP PEAK  8(9P13.3) WILD-TYPE" 
                   TCGA-HZ-8003                    TCGA-HZ-8005 
"AMP PEAK  8(9P13.3) WILD-TYPE" "AMP PEAK  8(9P13.3) WILD-TYPE" 
                   TCGA-HZ-8315                    TCGA-HZ-8317 
"AMP PEAK  8(9P13.3) WILD-TYPE" "AMP PEAK  8(9P13.3) WILD-TYPE" 
                   TCGA-HZ-8519                    TCGA-HZ-8636 
"AMP PEAK  8(9P13.3) WILD-TYPE"   "AMP PEAK  8(9P13.3) MUTATED" 
                   TCGA-HZ-8638                    TCGA-HZ-A49G 
"AMP PEAK  8(9P13.3) WILD-TYPE" "AMP PEAK  8(9P13.3) WILD-TYPE" 
                   TCGA-HZ-A49H                    TCGA-HZ-A4BH 
"AMP PEAK  8(9P13.3) WILD-TYPE" "AMP PEAK  8(9P13.3) WILD-TYPE" 
                   TCGA-HZ-A4BK                    TCGA-IB-7644 
"AMP PEAK  8(9P13.3) WILD-TYPE" "AMP PEAK  8(9P13.3) WILD-TYPE" 
                   TCGA-IB-7645                    TCGA-IB-7646 
"AMP PEAK  8(9P13.3) WILD-TYPE"   "AMP PEAK  8(9P13.3) MUTATED" 
                   TCGA-IB-7647                    TCGA-IB-7649 
"AMP PEAK  8(9P13.3) WILD-TYPE" "AMP PEAK  8(9P13.3) WILD-TYPE" 
                   TCGA-IB-7651                    TCGA-IB-7652 
"AMP PEAK  8(9P13.3) WILD-TYPE" "AMP PEAK  8(9P13.3) WILD-TYPE" 
                   TCGA-IB-7885                    TCGA-IB-7886 
"AMP PEAK  8(9P13.3) WILD-TYPE" "AMP PEAK  8(9P13.3) WILD-TYPE" 
                   TCGA-IB-7887                    TCGA-IB-7888 
"AMP PEAK  8(9P13.3) WILD-TYPE" "AMP PEAK  8(9P13.3) WILD-TYPE" 
                   TCGA-IB-7889                    TCGA-IB-7890 
"AMP PEAK  8(9P13.3) WILD-TYPE" "AMP PEAK  8(9P13.3) WILD-TYPE" 
                   TCGA-IB-7891                    TCGA-IB-7893 
"AMP PEAK  8(9P13.3) WILD-TYPE"   "AMP PEAK  8(9P13.3) MUTATED" 
                   TCGA-IB-7897                    TCGA-IB-8126 
"AMP PEAK  8(9P13.3) WILD-TYPE"   "AMP PEAK  8(9P13.3) MUTATED" 
                   TCGA-IB-8127                    TCGA-IB-A5SO 
"AMP PEAK  8(9P13.3) WILD-TYPE" "AMP PEAK  8(9P13.3) WILD-TYPE" 
                   TCGA-IB-A5SP                    TCGA-IB-A5SQ 
"AMP PEAK  8(9P13.3) WILD-TYPE" "AMP PEAK  8(9P13.3) WILD-TYPE" 
                   TCGA-IB-A5SS                    TCGA-IB-A5ST 
"AMP PEAK  8(9P13.3) WILD-TYPE" "AMP PEAK  8(9P13.3) WILD-TYPE" 
                   TCGA-F2-6879                    TCGA-F2-6880 
"AMP PEAK  8(9P13.3) WILD-TYPE" "AMP PEAK  8(9P13.3) WILD-TYPE" 
                   TCGA-F2-7273                    TCGA-F2-7276 
"AMP PEAK  8(9P13.3) WILD-TYPE" "AMP PEAK  8(9P13.3) WILD-TYPE" 
                   TCGA-F2-A44G                    TCGA-F2-A44H 
"AMP PEAK  8(9P13.3) WILD-TYPE" "AMP PEAK  8(9P13.3) WILD-TYPE" 
                   TCGA-FB-A4P5                    TCGA-FB-A545 
"AMP PEAK  8(9P13.3) WILD-TYPE" "AMP PEAK  8(9P13.3) WILD-TYPE" 
                   TCGA-H6-8124                    TCGA-H6-A45N 
"AMP PEAK  8(9P13.3) WILD-TYPE" "AMP PEAK  8(9P13.3) WILD-TYPE" 
                   TCGA-HZ-7289                    TCGA-HZ-7918 
"AMP PEAK  8(9P13.3) WILD-TYPE" "AMP PEAK  8(9P13.3) WILD-TYPE" 
                   TCGA-HZ-7919                    TCGA-HZ-7922 
"AMP PEAK  8(9P13.3) WILD-TYPE" "AMP PEAK  8(9P13.3) WILD-TYPE" 
                   TCGA-HZ-7923                    TCGA-HZ-7924 
"AMP PEAK  8(9P13.3) WILD-TYPE" "AMP PEAK  8(9P13.3) WILD-TYPE" 
                   TCGA-HZ-7925                    TCGA-HZ-7926 
  "AMP PEAK  8(9P13.3) MUTATED" "AMP PEAK  8(9P13.3) WILD-TYPE" 
                   TCGA-HZ-8001                    TCGA-HZ-8002 
"AMP PEAK  8(9P13.3) WILD-TYPE" "AMP PEAK  8(9P13.3) WILD-TYPE" 
                   TCGA-HZ-8003                    TCGA-HZ-8005 
"AMP PEAK  8(9P13.3) WILD-TYPE" "AMP PEAK  8(9P13.3) WILD-TYPE" 
                   TCGA-HZ-8315                    TCGA-HZ-8317 
"AMP PEAK  8(9P13.3) WILD-TYPE" "AMP PEAK  8(9P13.3) WILD-TYPE" 
                   TCGA-HZ-8519                    TCGA-HZ-8636 
"AMP PEAK  8(9P13.3) WILD-TYPE"   "AMP PEAK  8(9P13.3) MUTATED" 
                   TCGA-HZ-8638                    TCGA-HZ-A49G 
"AMP PEAK  8(9P13.3) WILD-TYPE" "AMP PEAK  8(9P13.3) WILD-TYPE" 
                   TCGA-HZ-A49H                    TCGA-HZ-A4BH 
"AMP PEAK  8(9P13.3) WILD-TYPE" "AMP PEAK  8(9P13.3) WILD-TYPE" 
                   TCGA-HZ-A4BK                    TCGA-IB-7644 
"AMP PEAK  8(9P13.3) WILD-TYPE" "AMP PEAK  8(9P13.3) WILD-TYPE" 
                   TCGA-IB-7645                    TCGA-IB-7646 
"AMP PEAK  8(9P13.3) WILD-TYPE"   "AMP PEAK  8(9P13.3) MUTATED" 
                   TCGA-IB-7647                    TCGA-IB-7649 
"AMP PEAK  8(9P13.3) WILD-TYPE" "AMP PEAK  8(9P13.3) WILD-TYPE" 
                   TCGA-IB-7651                    TCGA-IB-7652 
"AMP PEAK  8(9P13.3) WILD-TYPE" "AMP PEAK  8(9P13.3) WILD-TYPE" 
                   TCGA-IB-7885                    TCGA-IB-7886 
"AMP PEAK  8(9P13.3) WILD-TYPE" "AMP PEAK  8(9P13.3) WILD-TYPE" 
                   TCGA-IB-7887                    TCGA-IB-7888 
"AMP PEAK  8(9P13.3) WILD-TYPE" "AMP PEAK  8(9P13.3) WILD-TYPE" 
                   TCGA-IB-7889                    TCGA-IB-7890 
"AMP PEAK  8(9P13.3) WILD-TYPE" "AMP PEAK  8(9P13.3) WILD-TYPE" 
                   TCGA-IB-7891                    TCGA-IB-7893 
"AMP PEAK  8(9P13.3) WILD-TYPE"   "AMP PEAK  8(9P13.3) MUTATED" 
                   TCGA-IB-7897                    TCGA-IB-8126 
"AMP PEAK  8(9P13.3) WILD-TYPE"   "AMP PEAK  8(9P13.3) MUTATED" 
                   TCGA-IB-8127                    TCGA-IB-A5SO 
"AMP PEAK  8(9P13.3) WILD-TYPE" "AMP PEAK  8(9P13.3) WILD-TYPE" 
                   TCGA-IB-A5SP                    TCGA-IB-A5SQ 
"AMP PEAK  8(9P13.3) WILD-TYPE" "AMP PEAK  8(9P13.3) WILD-TYPE" 
                   TCGA-IB-A5SS                    TCGA-IB-A5ST 
"AMP PEAK  8(9P13.3) WILD-TYPE" "AMP PEAK  8(9P13.3) WILD-TYPE" 
[1] "hr=" "3.9"
D6V2, continuous
                               vv
clus                            STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III
  AMP PEAK  8(9P13.3) MUTATED          0        0         1         2         1
  AMP PEAK  8(9P13.3) WILD-TYPE        2        3         6        39         1
                               vv
clus                            STAGE IV
  AMP PEAK  8(9P13.3) MUTATED          1
  AMP PEAK  8(9P13.3) WILD-TYPE        1
D6V3, multiclass
                               vv
clus                            T1+T2 T3+T4
  AMP PEAK  8(9P13.3) MUTATED       0     5
  AMP PEAK  8(9P13.3) WILD-TYPE     6    46
D6V4, multiclass
       clus
vv      AMP PEAK  8(9P13.3) MUTATED AMP PEAK  8(9P13.3) WILD-TYPE
  T1+T2                           0                             6
  T3+T4                           5                            46
D6V5, binary
                               cls
clus                             0  1
  AMP PEAK  8(9P13.3) MUTATED    2  3
  AMP PEAK  8(9P13.3) WILD-TYPE 12 40
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  8(9P13.3) MUTATED      2    3
  AMP PEAK  8(9P13.3) WILD-TYPE   12   40
   clus
vv  AMP PEAK  8(9P13.3) MUTATED AMP PEAK  8(9P13.3) WILD-TYPE
  0                           2                            12
  1                           3                            40
                               vv
clus                            M0 M1 MX
  AMP PEAK  8(9P13.3) MUTATED    3  1  1
  AMP PEAK  8(9P13.3) WILD-TYPE 29  1 22
D6V6, multiclass
    clus
vv   AMP PEAK  8(9P13.3) MUTATED AMP PEAK  8(9P13.3) WILD-TYPE
  M0                           3                            29
  M1                           1                             1
  MX                           1                            22
D6V7, binary
                               cls
clus                             0  1
  AMP PEAK  8(9P13.3) MUTATED    2  3
  AMP PEAK  8(9P13.3) WILD-TYPE 29 23
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  8(9P13.3) MUTATED      2    3
  AMP PEAK  8(9P13.3) WILD-TYPE   29   23
        clus
vv       AMP PEAK  8(9P13.3) MUTATED AMP PEAK  8(9P13.3) WILD-TYPE
  FEMALE                           2                            29
  MALE                             3                            23
                               vv
clus                            PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  AMP PEAK  8(9P13.3) MUTATED                                     5
  AMP PEAK  8(9P13.3) WILD-TYPE                                  46
                               vv
clus                            PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  AMP PEAK  8(9P13.3) MUTATED                                       0
  AMP PEAK  8(9P13.3) WILD-TYPE                                     4
                               vv
clus                            PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  AMP PEAK  8(9P13.3) MUTATED                                                  0
  AMP PEAK  8(9P13.3) WILD-TYPE                                                1
D6V8, multiclass
                                                  clus
vv                                                 AMP PEAK  8(9P13.3) MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                        5
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                      0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                           0
                                                  clus
vv                                                 AMP PEAK  8(9P13.3) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                         46
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                        4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                             1
D6V9, continuous
[1] "Remove cluster labels:"      "AMP PEAK  8(9P13.3) MUTATED"
clus
  AMP PEAK  8(9P13.3) MUTATED AMP PEAK  8(9P13.3) WILD-TYPE 
                            1                            13 
                   TCGA-F2-6880                    TCGA-FB-A4P5 
"AMP PEAK  8(9P13.3) WILD-TYPE" "AMP PEAK  8(9P13.3) WILD-TYPE" 
                   TCGA-H6-8124                    TCGA-H6-A45N 
"AMP PEAK  8(9P13.3) WILD-TYPE" "AMP PEAK  8(9P13.3) WILD-TYPE" 
                   TCGA-IB-7644                    TCGA-IB-7649 
"AMP PEAK  8(9P13.3) WILD-TYPE" "AMP PEAK  8(9P13.3) WILD-TYPE" 
                   TCGA-IB-7651                    TCGA-IB-7885 
"AMP PEAK  8(9P13.3) WILD-TYPE" "AMP PEAK  8(9P13.3) WILD-TYPE" 
                   TCGA-IB-7886                    TCGA-IB-7887 
"AMP PEAK  8(9P13.3) WILD-TYPE" "AMP PEAK  8(9P13.3) WILD-TYPE" 
                   TCGA-IB-7891                    TCGA-IB-8127 
"AMP PEAK  8(9P13.3) WILD-TYPE" "AMP PEAK  8(9P13.3) WILD-TYPE" 
                   TCGA-IB-A5SS 
"AMP PEAK  8(9P13.3) WILD-TYPE" 
D6V10, continuous
[1] "Remove cluster labels:"      "AMP PEAK  8(9P13.3) MUTATED"
clus
  AMP PEAK  8(9P13.3) MUTATED AMP PEAK  8(9P13.3) WILD-TYPE 
                            1                            10 
                   TCGA-FB-A4P5                    TCGA-H6-8124 
"AMP PEAK  8(9P13.3) WILD-TYPE" "AMP PEAK  8(9P13.3) WILD-TYPE" 
                   TCGA-IB-7644                    TCGA-IB-7649 
"AMP PEAK  8(9P13.3) WILD-TYPE" "AMP PEAK  8(9P13.3) WILD-TYPE" 
                   TCGA-IB-7651                    TCGA-IB-7885 
"AMP PEAK  8(9P13.3) WILD-TYPE" "AMP PEAK  8(9P13.3) WILD-TYPE" 
                   TCGA-IB-7886                    TCGA-IB-7891 
"AMP PEAK  8(9P13.3) WILD-TYPE" "AMP PEAK  8(9P13.3) WILD-TYPE" 
                   TCGA-IB-8127                    TCGA-IB-A5SS 
"AMP PEAK  8(9P13.3) WILD-TYPE" "AMP PEAK  8(9P13.3) WILD-TYPE" 
                               vv
clus                            R0 R1 RX
  AMP PEAK  8(9P13.3) MUTATED    2  3  0
  AMP PEAK  8(9P13.3) WILD-TYPE 30 18  2
D6V11, multiclass
    clus
vv   AMP PEAK  8(9P13.3) MUTATED AMP PEAK  8(9P13.3) WILD-TYPE
  R0                           2                            30
  R1                           3                            18
  RX                           0                             2
D6V12, continuous

Clustering(7) Variable = AMP PEAK  9(11P11.2) MUTATION ANALYSIS
D7V1, survival
                                sevent
clus2                             0  1
  AMP PEAK  9(11P11.2) MUTATED    3  3
  AMP PEAK  9(11P11.2) WILD-TYPE 32 16
  AMP PEAK  9(11P11.2) MUTATED AMP PEAK  9(11P11.2) WILD-TYPE 
                             6                             48 
  AMP PEAK  9(11P11.2) MUTATED AMP PEAK  9(11P11.2) WILD-TYPE 
                             3                             16 
$`AMP PEAK  9(11P11.2) MUTATED`
TCGA-FB-A545 TCGA-IB-7647 TCGA-IB-7886 TCGA-IB-7893 TCGA-IB-8127 TCGA-IB-A5SP 
        0.03        21.86         4.04         3.85        17.13         9.83 

$`AMP PEAK  9(11P11.2) WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.96        11.84         7.07         5.03         5.19 
TCGA-FB-A4P5 TCGA-H6-8124 TCGA-H6-A45N TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 
        0.13        12.89         7.63         7.86         0.92         0.66 
TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 
        0.13         0.26        12.13        12.03         0.26         0.62 
TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8519 
        0.99         0.69         3.91         0.92         0.49         0.10 
TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK 
        0.16         2.96         0.76         1.02         5.98         1.51 
TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 
       11.41        49.38         4.77        15.35        19.82        15.65 
TCGA-IB-7885 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 
       27.98         3.58        43.79        15.78        19.66        16.04 
TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-A5SO TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST 
       15.95         0.56        10.82         7.20        15.12         0.26 

  AMP PEAK  9(11P11.2) MUTATED AMP PEAK  9(11P11.2) WILD-TYPE 
                          0.03                           0.10 
  AMP PEAK  9(11P11.2) MUTATED AMP PEAK  9(11P11.2) WILD-TYPE 
                         21.86                          49.38 
  AMP PEAK  9(11P11.2) MUTATED AMP PEAK  9(11P11.2) WILD-TYPE 
                         6.935                          5.585 
[1] "0.0 - 21.9 (6.9)" "0.1 - 49.4 (5.6)"
                    TCGA-F2-6879                     TCGA-F2-6880 
"AMP PEAK  9(11P11.2) WILD-TYPE" "AMP PEAK  9(11P11.2) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"AMP PEAK  9(11P11.2) WILD-TYPE" "AMP PEAK  9(11P11.2) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
"AMP PEAK  9(11P11.2) WILD-TYPE" "AMP PEAK  9(11P11.2) WILD-TYPE" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"AMP PEAK  9(11P11.2) WILD-TYPE"   "AMP PEAK  9(11P11.2) MUTATED" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
"AMP PEAK  9(11P11.2) WILD-TYPE" "AMP PEAK  9(11P11.2) WILD-TYPE" 
                    TCGA-HZ-7289                     TCGA-HZ-7918 
"AMP PEAK  9(11P11.2) WILD-TYPE" "AMP PEAK  9(11P11.2) WILD-TYPE" 
                    TCGA-HZ-7919                     TCGA-HZ-7922 
"AMP PEAK  9(11P11.2) WILD-TYPE" "AMP PEAK  9(11P11.2) WILD-TYPE" 
                    TCGA-HZ-7923                     TCGA-HZ-7924 
"AMP PEAK  9(11P11.2) WILD-TYPE" "AMP PEAK  9(11P11.2) WILD-TYPE" 
                    TCGA-HZ-7925                     TCGA-HZ-7926 
"AMP PEAK  9(11P11.2) WILD-TYPE" "AMP PEAK  9(11P11.2) WILD-TYPE" 
                    TCGA-HZ-8001                     TCGA-HZ-8002 
"AMP PEAK  9(11P11.2) WILD-TYPE" "AMP PEAK  9(11P11.2) WILD-TYPE" 
                    TCGA-HZ-8003                     TCGA-HZ-8005 
"AMP PEAK  9(11P11.2) WILD-TYPE" "AMP PEAK  9(11P11.2) WILD-TYPE" 
                    TCGA-HZ-8315                     TCGA-HZ-8317 
"AMP PEAK  9(11P11.2) WILD-TYPE" "AMP PEAK  9(11P11.2) WILD-TYPE" 
                    TCGA-HZ-8519                     TCGA-HZ-8636 
"AMP PEAK  9(11P11.2) WILD-TYPE" "AMP PEAK  9(11P11.2) WILD-TYPE" 
                    TCGA-HZ-8638                     TCGA-HZ-A49G 
"AMP PEAK  9(11P11.2) WILD-TYPE" "AMP PEAK  9(11P11.2) WILD-TYPE" 
                    TCGA-HZ-A49H                     TCGA-HZ-A4BH 
"AMP PEAK  9(11P11.2) WILD-TYPE" "AMP PEAK  9(11P11.2) WILD-TYPE" 
                    TCGA-HZ-A4BK                     TCGA-IB-7644 
"AMP PEAK  9(11P11.2) WILD-TYPE" "AMP PEAK  9(11P11.2) WILD-TYPE" 
                    TCGA-IB-7645                     TCGA-IB-7646 
"AMP PEAK  9(11P11.2) WILD-TYPE" "AMP PEAK  9(11P11.2) WILD-TYPE" 
                    TCGA-IB-7647                     TCGA-IB-7649 
  "AMP PEAK  9(11P11.2) MUTATED" "AMP PEAK  9(11P11.2) WILD-TYPE" 
                    TCGA-IB-7651                     TCGA-IB-7652 
"AMP PEAK  9(11P11.2) WILD-TYPE" "AMP PEAK  9(11P11.2) WILD-TYPE" 
                    TCGA-IB-7885                     TCGA-IB-7886 
"AMP PEAK  9(11P11.2) WILD-TYPE"   "AMP PEAK  9(11P11.2) MUTATED" 
                    TCGA-IB-7887                     TCGA-IB-7888 
"AMP PEAK  9(11P11.2) WILD-TYPE" "AMP PEAK  9(11P11.2) WILD-TYPE" 
                    TCGA-IB-7889                     TCGA-IB-7890 
"AMP PEAK  9(11P11.2) WILD-TYPE" "AMP PEAK  9(11P11.2) WILD-TYPE" 
                    TCGA-IB-7891                     TCGA-IB-7893 
"AMP PEAK  9(11P11.2) WILD-TYPE"   "AMP PEAK  9(11P11.2) MUTATED" 
                    TCGA-IB-7897                     TCGA-IB-8126 
"AMP PEAK  9(11P11.2) WILD-TYPE" "AMP PEAK  9(11P11.2) WILD-TYPE" 
                    TCGA-IB-8127                     TCGA-IB-A5SO 
  "AMP PEAK  9(11P11.2) MUTATED" "AMP PEAK  9(11P11.2) WILD-TYPE" 
                    TCGA-IB-A5SP                     TCGA-IB-A5SQ 
  "AMP PEAK  9(11P11.2) MUTATED" "AMP PEAK  9(11P11.2) WILD-TYPE" 
                    TCGA-IB-A5SS                     TCGA-IB-A5ST 
"AMP PEAK  9(11P11.2) WILD-TYPE" "AMP PEAK  9(11P11.2) WILD-TYPE" 
                    TCGA-F2-6879                     TCGA-F2-6880 
"AMP PEAK  9(11P11.2) WILD-TYPE" "AMP PEAK  9(11P11.2) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"AMP PEAK  9(11P11.2) WILD-TYPE" "AMP PEAK  9(11P11.2) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
"AMP PEAK  9(11P11.2) WILD-TYPE" "AMP PEAK  9(11P11.2) WILD-TYPE" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"AMP PEAK  9(11P11.2) WILD-TYPE"   "AMP PEAK  9(11P11.2) MUTATED" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
"AMP PEAK  9(11P11.2) WILD-TYPE" "AMP PEAK  9(11P11.2) WILD-TYPE" 
                    TCGA-HZ-7289                     TCGA-HZ-7918 
"AMP PEAK  9(11P11.2) WILD-TYPE" "AMP PEAK  9(11P11.2) WILD-TYPE" 
                    TCGA-HZ-7919                     TCGA-HZ-7922 
"AMP PEAK  9(11P11.2) WILD-TYPE" "AMP PEAK  9(11P11.2) WILD-TYPE" 
                    TCGA-HZ-7923                     TCGA-HZ-7924 
"AMP PEAK  9(11P11.2) WILD-TYPE" "AMP PEAK  9(11P11.2) WILD-TYPE" 
                    TCGA-HZ-7925                     TCGA-HZ-7926 
"AMP PEAK  9(11P11.2) WILD-TYPE" "AMP PEAK  9(11P11.2) WILD-TYPE" 
                    TCGA-HZ-8001                     TCGA-HZ-8002 
"AMP PEAK  9(11P11.2) WILD-TYPE" "AMP PEAK  9(11P11.2) WILD-TYPE" 
                    TCGA-HZ-8003                     TCGA-HZ-8005 
"AMP PEAK  9(11P11.2) WILD-TYPE" "AMP PEAK  9(11P11.2) WILD-TYPE" 
                    TCGA-HZ-8315                     TCGA-HZ-8317 
"AMP PEAK  9(11P11.2) WILD-TYPE" "AMP PEAK  9(11P11.2) WILD-TYPE" 
                    TCGA-HZ-8519                     TCGA-HZ-8636 
"AMP PEAK  9(11P11.2) WILD-TYPE" "AMP PEAK  9(11P11.2) WILD-TYPE" 
                    TCGA-HZ-8638                     TCGA-HZ-A49G 
"AMP PEAK  9(11P11.2) WILD-TYPE" "AMP PEAK  9(11P11.2) WILD-TYPE" 
                    TCGA-HZ-A49H                     TCGA-HZ-A4BH 
"AMP PEAK  9(11P11.2) WILD-TYPE" "AMP PEAK  9(11P11.2) WILD-TYPE" 
                    TCGA-HZ-A4BK                     TCGA-IB-7644 
"AMP PEAK  9(11P11.2) WILD-TYPE" "AMP PEAK  9(11P11.2) WILD-TYPE" 
                    TCGA-IB-7645                     TCGA-IB-7646 
"AMP PEAK  9(11P11.2) WILD-TYPE" "AMP PEAK  9(11P11.2) WILD-TYPE" 
                    TCGA-IB-7647                     TCGA-IB-7649 
  "AMP PEAK  9(11P11.2) MUTATED" "AMP PEAK  9(11P11.2) WILD-TYPE" 
                    TCGA-IB-7651                     TCGA-IB-7652 
"AMP PEAK  9(11P11.2) WILD-TYPE" "AMP PEAK  9(11P11.2) WILD-TYPE" 
                    TCGA-IB-7885                     TCGA-IB-7886 
"AMP PEAK  9(11P11.2) WILD-TYPE"   "AMP PEAK  9(11P11.2) MUTATED" 
                    TCGA-IB-7887                     TCGA-IB-7888 
"AMP PEAK  9(11P11.2) WILD-TYPE" "AMP PEAK  9(11P11.2) WILD-TYPE" 
                    TCGA-IB-7889                     TCGA-IB-7890 
"AMP PEAK  9(11P11.2) WILD-TYPE" "AMP PEAK  9(11P11.2) WILD-TYPE" 
                    TCGA-IB-7891                     TCGA-IB-7893 
"AMP PEAK  9(11P11.2) WILD-TYPE"   "AMP PEAK  9(11P11.2) MUTATED" 
                    TCGA-IB-7897                     TCGA-IB-8126 
"AMP PEAK  9(11P11.2) WILD-TYPE" "AMP PEAK  9(11P11.2) WILD-TYPE" 
                    TCGA-IB-8127                     TCGA-IB-A5SO 
  "AMP PEAK  9(11P11.2) MUTATED" "AMP PEAK  9(11P11.2) WILD-TYPE" 
                    TCGA-IB-A5SP                     TCGA-IB-A5SQ 
  "AMP PEAK  9(11P11.2) MUTATED" "AMP PEAK  9(11P11.2) WILD-TYPE" 
                    TCGA-IB-A5SS                     TCGA-IB-A5ST 
"AMP PEAK  9(11P11.2) WILD-TYPE" "AMP PEAK  9(11P11.2) WILD-TYPE" 
                    TCGA-F2-6879                     TCGA-F2-6880 
"AMP PEAK  9(11P11.2) WILD-TYPE" "AMP PEAK  9(11P11.2) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"AMP PEAK  9(11P11.2) WILD-TYPE" "AMP PEAK  9(11P11.2) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
"AMP PEAK  9(11P11.2) WILD-TYPE" "AMP PEAK  9(11P11.2) WILD-TYPE" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"AMP PEAK  9(11P11.2) WILD-TYPE"   "AMP PEAK  9(11P11.2) MUTATED" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
"AMP PEAK  9(11P11.2) WILD-TYPE" "AMP PEAK  9(11P11.2) WILD-TYPE" 
                    TCGA-HZ-7289                     TCGA-HZ-7918 
"AMP PEAK  9(11P11.2) WILD-TYPE" "AMP PEAK  9(11P11.2) WILD-TYPE" 
                    TCGA-HZ-7919                     TCGA-HZ-7922 
"AMP PEAK  9(11P11.2) WILD-TYPE" "AMP PEAK  9(11P11.2) WILD-TYPE" 
                    TCGA-HZ-7923                     TCGA-HZ-7924 
"AMP PEAK  9(11P11.2) WILD-TYPE" "AMP PEAK  9(11P11.2) WILD-TYPE" 
                    TCGA-HZ-7925                     TCGA-HZ-7926 
"AMP PEAK  9(11P11.2) WILD-TYPE" "AMP PEAK  9(11P11.2) WILD-TYPE" 
                    TCGA-HZ-8001                     TCGA-HZ-8002 
"AMP PEAK  9(11P11.2) WILD-TYPE" "AMP PEAK  9(11P11.2) WILD-TYPE" 
                    TCGA-HZ-8003                     TCGA-HZ-8005 
"AMP PEAK  9(11P11.2) WILD-TYPE" "AMP PEAK  9(11P11.2) WILD-TYPE" 
                    TCGA-HZ-8315                     TCGA-HZ-8317 
"AMP PEAK  9(11P11.2) WILD-TYPE" "AMP PEAK  9(11P11.2) WILD-TYPE" 
                    TCGA-HZ-8519                     TCGA-HZ-8636 
"AMP PEAK  9(11P11.2) WILD-TYPE" "AMP PEAK  9(11P11.2) WILD-TYPE" 
                    TCGA-HZ-8638                     TCGA-HZ-A49G 
"AMP PEAK  9(11P11.2) WILD-TYPE" "AMP PEAK  9(11P11.2) WILD-TYPE" 
                    TCGA-HZ-A49H                     TCGA-HZ-A4BH 
"AMP PEAK  9(11P11.2) WILD-TYPE" "AMP PEAK  9(11P11.2) WILD-TYPE" 
                    TCGA-HZ-A4BK                     TCGA-IB-7644 
"AMP PEAK  9(11P11.2) WILD-TYPE" "AMP PEAK  9(11P11.2) WILD-TYPE" 
                    TCGA-IB-7645                     TCGA-IB-7646 
"AMP PEAK  9(11P11.2) WILD-TYPE" "AMP PEAK  9(11P11.2) WILD-TYPE" 
                    TCGA-IB-7647                     TCGA-IB-7649 
  "AMP PEAK  9(11P11.2) MUTATED" "AMP PEAK  9(11P11.2) WILD-TYPE" 
                    TCGA-IB-7651                     TCGA-IB-7652 
"AMP PEAK  9(11P11.2) WILD-TYPE" "AMP PEAK  9(11P11.2) WILD-TYPE" 
                    TCGA-IB-7885                     TCGA-IB-7886 
"AMP PEAK  9(11P11.2) WILD-TYPE"   "AMP PEAK  9(11P11.2) MUTATED" 
                    TCGA-IB-7887                     TCGA-IB-7888 
"AMP PEAK  9(11P11.2) WILD-TYPE" "AMP PEAK  9(11P11.2) WILD-TYPE" 
                    TCGA-IB-7889                     TCGA-IB-7890 
"AMP PEAK  9(11P11.2) WILD-TYPE" "AMP PEAK  9(11P11.2) WILD-TYPE" 
                    TCGA-IB-7891                     TCGA-IB-7893 
"AMP PEAK  9(11P11.2) WILD-TYPE"   "AMP PEAK  9(11P11.2) MUTATED" 
                    TCGA-IB-7897                     TCGA-IB-8126 
"AMP PEAK  9(11P11.2) WILD-TYPE" "AMP PEAK  9(11P11.2) WILD-TYPE" 
                    TCGA-IB-8127                     TCGA-IB-A5SO 
  "AMP PEAK  9(11P11.2) MUTATED" "AMP PEAK  9(11P11.2) WILD-TYPE" 
                    TCGA-IB-A5SP                     TCGA-IB-A5SQ 
  "AMP PEAK  9(11P11.2) MUTATED" "AMP PEAK  9(11P11.2) WILD-TYPE" 
                    TCGA-IB-A5SS                     TCGA-IB-A5ST 
"AMP PEAK  9(11P11.2) WILD-TYPE" "AMP PEAK  9(11P11.2) WILD-TYPE" 
[1] "hr=" "1.2"
D7V2, continuous
                                vv
clus                             STAGE IA STAGE IB STAGE IIA STAGE IIB
  AMP PEAK  9(11P11.2) MUTATED          0        0         2         4
  AMP PEAK  9(11P11.2) WILD-TYPE        2        3         5        37
                                vv
clus                             STAGE III STAGE IV
  AMP PEAK  9(11P11.2) MUTATED           0        0
  AMP PEAK  9(11P11.2) WILD-TYPE         2        2
D7V3, multiclass
                                vv
clus                             T1+T2 T3+T4
  AMP PEAK  9(11P11.2) MUTATED       0     6
  AMP PEAK  9(11P11.2) WILD-TYPE     6    45
D7V4, multiclass
       clus
vv      AMP PEAK  9(11P11.2) MUTATED AMP PEAK  9(11P11.2) WILD-TYPE
  T1+T2                            0                              6
  T3+T4                            6                             45
D7V5, binary
                                cls
clus                              0  1
  AMP PEAK  9(11P11.2) MUTATED    2  4
  AMP PEAK  9(11P11.2) WILD-TYPE 12 39
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  9(11P11.2) MUTATED      2    4
  AMP PEAK  9(11P11.2) WILD-TYPE   12   39
   clus
vv  AMP PEAK  9(11P11.2) MUTATED AMP PEAK  9(11P11.2) WILD-TYPE
  0                            2                             12
  1                            4                             39
                                vv
clus                             M0 M1 MX
  AMP PEAK  9(11P11.2) MUTATED    6  0  0
  AMP PEAK  9(11P11.2) WILD-TYPE 26  2 23
D7V6, multiclass
    clus
vv   AMP PEAK  9(11P11.2) MUTATED AMP PEAK  9(11P11.2) WILD-TYPE
  M0                            6                             26
  M1                            0                              2
  MX                            0                             23
D7V7, binary
                                cls
clus                              0  1
  AMP PEAK  9(11P11.2) MUTATED    2  4
  AMP PEAK  9(11P11.2) WILD-TYPE 29 22
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  9(11P11.2) MUTATED      2    4
  AMP PEAK  9(11P11.2) WILD-TYPE   29   22
        clus
vv       AMP PEAK  9(11P11.2) MUTATED AMP PEAK  9(11P11.2) WILD-TYPE
  FEMALE                            2                             29
  MALE                              4                             22
                                vv
clus                             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  AMP PEAK  9(11P11.2) MUTATED                                     6
  AMP PEAK  9(11P11.2) WILD-TYPE                                  45
                                vv
clus                             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  AMP PEAK  9(11P11.2) MUTATED                                       0
  AMP PEAK  9(11P11.2) WILD-TYPE                                     4
                                vv
clus                             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  AMP PEAK  9(11P11.2) MUTATED                                                  0
  AMP PEAK  9(11P11.2) WILD-TYPE                                                1
D7V8, multiclass
                                                  clus
vv                                                 AMP PEAK  9(11P11.2) MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                         6
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                       0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                            0
                                                  clus
vv                                                 AMP PEAK  9(11P11.2) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                          45
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                         4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                              1
D7V9, continuous
[1] "Remove cluster labels:"       "AMP PEAK  9(11P11.2) MUTATED"
clus
  AMP PEAK  9(11P11.2) MUTATED AMP PEAK  9(11P11.2) WILD-TYPE 
                             2                             12 
                    TCGA-F2-6880                     TCGA-FB-A4P5 
"AMP PEAK  9(11P11.2) WILD-TYPE" "AMP PEAK  9(11P11.2) WILD-TYPE" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
"AMP PEAK  9(11P11.2) WILD-TYPE" "AMP PEAK  9(11P11.2) WILD-TYPE" 
                    TCGA-IB-7644                     TCGA-IB-7649 
"AMP PEAK  9(11P11.2) WILD-TYPE" "AMP PEAK  9(11P11.2) WILD-TYPE" 
                    TCGA-IB-7651                     TCGA-IB-7885 
"AMP PEAK  9(11P11.2) WILD-TYPE" "AMP PEAK  9(11P11.2) WILD-TYPE" 
                    TCGA-IB-7887                     TCGA-IB-7891 
"AMP PEAK  9(11P11.2) WILD-TYPE" "AMP PEAK  9(11P11.2) WILD-TYPE" 
                    TCGA-IB-8126                     TCGA-IB-A5SS 
"AMP PEAK  9(11P11.2) WILD-TYPE" "AMP PEAK  9(11P11.2) WILD-TYPE" 
D7V10, continuous
[1] "Remove cluster labels:"       "AMP PEAK  9(11P11.2) MUTATED"
clus
  AMP PEAK  9(11P11.2) MUTATED AMP PEAK  9(11P11.2) WILD-TYPE 
                             2                              9 
                    TCGA-FB-A4P5                     TCGA-H6-8124 
"AMP PEAK  9(11P11.2) WILD-TYPE" "AMP PEAK  9(11P11.2) WILD-TYPE" 
                    TCGA-IB-7644                     TCGA-IB-7649 
"AMP PEAK  9(11P11.2) WILD-TYPE" "AMP PEAK  9(11P11.2) WILD-TYPE" 
                    TCGA-IB-7651                     TCGA-IB-7885 
"AMP PEAK  9(11P11.2) WILD-TYPE" "AMP PEAK  9(11P11.2) WILD-TYPE" 
                    TCGA-IB-7891                     TCGA-IB-8126 
"AMP PEAK  9(11P11.2) WILD-TYPE" "AMP PEAK  9(11P11.2) WILD-TYPE" 
                    TCGA-IB-A5SS 
"AMP PEAK  9(11P11.2) WILD-TYPE" 
                                vv
clus                             R0 R1 RX
  AMP PEAK  9(11P11.2) MUTATED    1  4  0
  AMP PEAK  9(11P11.2) WILD-TYPE 31 17  2
D7V11, multiclass
    clus
vv   AMP PEAK  9(11P11.2) MUTATED AMP PEAK  9(11P11.2) WILD-TYPE
  R0                            1                             31
  R1                            4                             17
  RX                            0                              2
D7V12, continuous

Clustering(8) Variable = AMP PEAK 10(12P13.33) MUTATION ANALYSIS
D8V1, survival
                                 sevent
clus2                              0  1
  AMP PEAK 10(12P13.33) MUTATED    3  4
  AMP PEAK 10(12P13.33) WILD-TYPE 32 15
  AMP PEAK 10(12P13.33) MUTATED AMP PEAK 10(12P13.33) WILD-TYPE 
                              7                              47 
  AMP PEAK 10(12P13.33) MUTATED AMP PEAK 10(12P13.33) WILD-TYPE 
                              4                              15 
$`AMP PEAK 10(12P13.33) MUTATED`
TCGA-F2-6879 TCGA-HZ-7289 TCGA-HZ-7922 TCGA-HZ-8005 TCGA-IB-7646 TCGA-IB-7890 
       10.98         7.86         0.13         3.91         4.77        19.66 
TCGA-IB-8127 
       17.13 

$`AMP PEAK 10(12P13.33) WILD-TYPE`
TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A4P5 
        9.96        11.84         7.07         5.03         5.19         0.13 
TCGA-FB-A545 TCGA-H6-8124 TCGA-H6-A45N TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7923 
        0.03        12.89         7.63         0.92         0.66         0.26 
TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 
       12.13        12.03         0.26         0.62         0.99         0.69 
TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G 
        0.92         0.49         0.10         0.16         2.96         0.76 
TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7647 
        1.02         5.98         1.51        11.41        49.38        21.86 
TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 
       15.35        19.82        15.65        27.98         4.04         3.58 
TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 
       43.79        15.78        16.04         3.85        15.95         0.56 
TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST 
       10.82         9.83         7.20        15.12         0.26 

  AMP PEAK 10(12P13.33) MUTATED AMP PEAK 10(12P13.33) WILD-TYPE 
                           0.13                            0.03 
  AMP PEAK 10(12P13.33) MUTATED AMP PEAK 10(12P13.33) WILD-TYPE 
                          19.66                           49.38 
  AMP PEAK 10(12P13.33) MUTATED AMP PEAK 10(12P13.33) WILD-TYPE 
                           7.86                            5.19 
[1] "0.1 - 19.7 (7.9)" "0.0 - 49.4 (5.2)"
                     TCGA-F2-6879                      TCGA-F2-6880 
  "AMP PEAK 10(12P13.33) MUTATED" "AMP PEAK 10(12P13.33) WILD-TYPE" 
                     TCGA-F2-7273                      TCGA-F2-7276 
"AMP PEAK 10(12P13.33) WILD-TYPE" "AMP PEAK 10(12P13.33) WILD-TYPE" 
                     TCGA-F2-A44G                      TCGA-F2-A44H 
"AMP PEAK 10(12P13.33) WILD-TYPE" "AMP PEAK 10(12P13.33) WILD-TYPE" 
                     TCGA-FB-A4P5                      TCGA-FB-A545 
"AMP PEAK 10(12P13.33) WILD-TYPE" "AMP PEAK 10(12P13.33) WILD-TYPE" 
                     TCGA-H6-8124                      TCGA-H6-A45N 
"AMP PEAK 10(12P13.33) WILD-TYPE" "AMP PEAK 10(12P13.33) WILD-TYPE" 
                     TCGA-HZ-7289                      TCGA-HZ-7918 
  "AMP PEAK 10(12P13.33) MUTATED" "AMP PEAK 10(12P13.33) WILD-TYPE" 
                     TCGA-HZ-7919                      TCGA-HZ-7922 
"AMP PEAK 10(12P13.33) WILD-TYPE"   "AMP PEAK 10(12P13.33) MUTATED" 
                     TCGA-HZ-7923                      TCGA-HZ-7924 
"AMP PEAK 10(12P13.33) WILD-TYPE" "AMP PEAK 10(12P13.33) WILD-TYPE" 
                     TCGA-HZ-7925                      TCGA-HZ-7926 
"AMP PEAK 10(12P13.33) WILD-TYPE" "AMP PEAK 10(12P13.33) WILD-TYPE" 
                     TCGA-HZ-8001                      TCGA-HZ-8002 
"AMP PEAK 10(12P13.33) WILD-TYPE" "AMP PEAK 10(12P13.33) WILD-TYPE" 
                     TCGA-HZ-8003                      TCGA-HZ-8005 
"AMP PEAK 10(12P13.33) WILD-TYPE"   "AMP PEAK 10(12P13.33) MUTATED" 
                     TCGA-HZ-8315                      TCGA-HZ-8317 
"AMP PEAK 10(12P13.33) WILD-TYPE" "AMP PEAK 10(12P13.33) WILD-TYPE" 
                     TCGA-HZ-8519                      TCGA-HZ-8636 
"AMP PEAK 10(12P13.33) WILD-TYPE" "AMP PEAK 10(12P13.33) WILD-TYPE" 
                     TCGA-HZ-8638                      TCGA-HZ-A49G 
"AMP PEAK 10(12P13.33) WILD-TYPE" "AMP PEAK 10(12P13.33) WILD-TYPE" 
                     TCGA-HZ-A49H                      TCGA-HZ-A4BH 
"AMP PEAK 10(12P13.33) WILD-TYPE" "AMP PEAK 10(12P13.33) WILD-TYPE" 
                     TCGA-HZ-A4BK                      TCGA-IB-7644 
"AMP PEAK 10(12P13.33) WILD-TYPE" "AMP PEAK 10(12P13.33) WILD-TYPE" 
                     TCGA-IB-7645                      TCGA-IB-7646 
"AMP PEAK 10(12P13.33) WILD-TYPE"   "AMP PEAK 10(12P13.33) MUTATED" 
                     TCGA-IB-7647                      TCGA-IB-7649 
"AMP PEAK 10(12P13.33) WILD-TYPE" "AMP PEAK 10(12P13.33) WILD-TYPE" 
                     TCGA-IB-7651                      TCGA-IB-7652 
"AMP PEAK 10(12P13.33) WILD-TYPE" "AMP PEAK 10(12P13.33) WILD-TYPE" 
                     TCGA-IB-7885                      TCGA-IB-7886 
"AMP PEAK 10(12P13.33) WILD-TYPE" "AMP PEAK 10(12P13.33) WILD-TYPE" 
                     TCGA-IB-7887                      TCGA-IB-7888 
"AMP PEAK 10(12P13.33) WILD-TYPE" "AMP PEAK 10(12P13.33) WILD-TYPE" 
                     TCGA-IB-7889                      TCGA-IB-7890 
"AMP PEAK 10(12P13.33) WILD-TYPE"   "AMP PEAK 10(12P13.33) MUTATED" 
                     TCGA-IB-7891                      TCGA-IB-7893 
"AMP PEAK 10(12P13.33) WILD-TYPE" "AMP PEAK 10(12P13.33) WILD-TYPE" 
                     TCGA-IB-7897                      TCGA-IB-8126 
"AMP PEAK 10(12P13.33) WILD-TYPE" "AMP PEAK 10(12P13.33) WILD-TYPE" 
                     TCGA-IB-8127                      TCGA-IB-A5SO 
  "AMP PEAK 10(12P13.33) MUTATED" "AMP PEAK 10(12P13.33) WILD-TYPE" 
                     TCGA-IB-A5SP                      TCGA-IB-A5SQ 
"AMP PEAK 10(12P13.33) WILD-TYPE" "AMP PEAK 10(12P13.33) WILD-TYPE" 
                     TCGA-IB-A5SS                      TCGA-IB-A5ST 
"AMP PEAK 10(12P13.33) WILD-TYPE" "AMP PEAK 10(12P13.33) WILD-TYPE" 
                     TCGA-F2-6879                      TCGA-F2-6880 
  "AMP PEAK 10(12P13.33) MUTATED" "AMP PEAK 10(12P13.33) WILD-TYPE" 
                     TCGA-F2-7273                      TCGA-F2-7276 
"AMP PEAK 10(12P13.33) WILD-TYPE" "AMP PEAK 10(12P13.33) WILD-TYPE" 
                     TCGA-F2-A44G                      TCGA-F2-A44H 
"AMP PEAK 10(12P13.33) WILD-TYPE" "AMP PEAK 10(12P13.33) WILD-TYPE" 
                     TCGA-FB-A4P5                      TCGA-FB-A545 
"AMP PEAK 10(12P13.33) WILD-TYPE" "AMP PEAK 10(12P13.33) WILD-TYPE" 
                     TCGA-H6-8124                      TCGA-H6-A45N 
"AMP PEAK 10(12P13.33) WILD-TYPE" "AMP PEAK 10(12P13.33) WILD-TYPE" 
                     TCGA-HZ-7289                      TCGA-HZ-7918 
  "AMP PEAK 10(12P13.33) MUTATED" "AMP PEAK 10(12P13.33) WILD-TYPE" 
                     TCGA-HZ-7919                      TCGA-HZ-7922 
"AMP PEAK 10(12P13.33) WILD-TYPE"   "AMP PEAK 10(12P13.33) MUTATED" 
                     TCGA-HZ-7923                      TCGA-HZ-7924 
"AMP PEAK 10(12P13.33) WILD-TYPE" "AMP PEAK 10(12P13.33) WILD-TYPE" 
                     TCGA-HZ-7925                      TCGA-HZ-7926 
"AMP PEAK 10(12P13.33) WILD-TYPE" "AMP PEAK 10(12P13.33) WILD-TYPE" 
                     TCGA-HZ-8001                      TCGA-HZ-8002 
"AMP PEAK 10(12P13.33) WILD-TYPE" "AMP PEAK 10(12P13.33) WILD-TYPE" 
                     TCGA-HZ-8003                      TCGA-HZ-8005 
"AMP PEAK 10(12P13.33) WILD-TYPE"   "AMP PEAK 10(12P13.33) MUTATED" 
                     TCGA-HZ-8315                      TCGA-HZ-8317 
"AMP PEAK 10(12P13.33) WILD-TYPE" "AMP PEAK 10(12P13.33) WILD-TYPE" 
                     TCGA-HZ-8519                      TCGA-HZ-8636 
"AMP PEAK 10(12P13.33) WILD-TYPE" "AMP PEAK 10(12P13.33) WILD-TYPE" 
                     TCGA-HZ-8638                      TCGA-HZ-A49G 
"AMP PEAK 10(12P13.33) WILD-TYPE" "AMP PEAK 10(12P13.33) WILD-TYPE" 
                     TCGA-HZ-A49H                      TCGA-HZ-A4BH 
"AMP PEAK 10(12P13.33) WILD-TYPE" "AMP PEAK 10(12P13.33) WILD-TYPE" 
                     TCGA-HZ-A4BK                      TCGA-IB-7644 
"AMP PEAK 10(12P13.33) WILD-TYPE" "AMP PEAK 10(12P13.33) WILD-TYPE" 
                     TCGA-IB-7645                      TCGA-IB-7646 
"AMP PEAK 10(12P13.33) WILD-TYPE"   "AMP PEAK 10(12P13.33) MUTATED" 
                     TCGA-IB-7647                      TCGA-IB-7649 
"AMP PEAK 10(12P13.33) WILD-TYPE" "AMP PEAK 10(12P13.33) WILD-TYPE" 
                     TCGA-IB-7651                      TCGA-IB-7652 
"AMP PEAK 10(12P13.33) WILD-TYPE" "AMP PEAK 10(12P13.33) WILD-TYPE" 
                     TCGA-IB-7885                      TCGA-IB-7886 
"AMP PEAK 10(12P13.33) WILD-TYPE" "AMP PEAK 10(12P13.33) WILD-TYPE" 
                     TCGA-IB-7887                      TCGA-IB-7888 
"AMP PEAK 10(12P13.33) WILD-TYPE" "AMP PEAK 10(12P13.33) WILD-TYPE" 
                     TCGA-IB-7889                      TCGA-IB-7890 
"AMP PEAK 10(12P13.33) WILD-TYPE"   "AMP PEAK 10(12P13.33) MUTATED" 
                     TCGA-IB-7891                      TCGA-IB-7893 
"AMP PEAK 10(12P13.33) WILD-TYPE" "AMP PEAK 10(12P13.33) WILD-TYPE" 
                     TCGA-IB-7897                      TCGA-IB-8126 
"AMP PEAK 10(12P13.33) WILD-TYPE" "AMP PEAK 10(12P13.33) WILD-TYPE" 
                     TCGA-IB-8127                      TCGA-IB-A5SO 
  "AMP PEAK 10(12P13.33) MUTATED" "AMP PEAK 10(12P13.33) WILD-TYPE" 
                     TCGA-IB-A5SP                      TCGA-IB-A5SQ 
"AMP PEAK 10(12P13.33) WILD-TYPE" "AMP PEAK 10(12P13.33) WILD-TYPE" 
                     TCGA-IB-A5SS                      TCGA-IB-A5ST 
"AMP PEAK 10(12P13.33) WILD-TYPE" "AMP PEAK 10(12P13.33) WILD-TYPE" 
                     TCGA-F2-6879                      TCGA-F2-6880 
  "AMP PEAK 10(12P13.33) MUTATED" "AMP PEAK 10(12P13.33) WILD-TYPE" 
                     TCGA-F2-7273                      TCGA-F2-7276 
"AMP PEAK 10(12P13.33) WILD-TYPE" "AMP PEAK 10(12P13.33) WILD-TYPE" 
                     TCGA-F2-A44G                      TCGA-F2-A44H 
"AMP PEAK 10(12P13.33) WILD-TYPE" "AMP PEAK 10(12P13.33) WILD-TYPE" 
                     TCGA-FB-A4P5                      TCGA-FB-A545 
"AMP PEAK 10(12P13.33) WILD-TYPE" "AMP PEAK 10(12P13.33) WILD-TYPE" 
                     TCGA-H6-8124                      TCGA-H6-A45N 
"AMP PEAK 10(12P13.33) WILD-TYPE" "AMP PEAK 10(12P13.33) WILD-TYPE" 
                     TCGA-HZ-7289                      TCGA-HZ-7918 
  "AMP PEAK 10(12P13.33) MUTATED" "AMP PEAK 10(12P13.33) WILD-TYPE" 
                     TCGA-HZ-7919                      TCGA-HZ-7922 
"AMP PEAK 10(12P13.33) WILD-TYPE"   "AMP PEAK 10(12P13.33) MUTATED" 
                     TCGA-HZ-7923                      TCGA-HZ-7924 
"AMP PEAK 10(12P13.33) WILD-TYPE" "AMP PEAK 10(12P13.33) WILD-TYPE" 
                     TCGA-HZ-7925                      TCGA-HZ-7926 
"AMP PEAK 10(12P13.33) WILD-TYPE" "AMP PEAK 10(12P13.33) WILD-TYPE" 
                     TCGA-HZ-8001                      TCGA-HZ-8002 
"AMP PEAK 10(12P13.33) WILD-TYPE" "AMP PEAK 10(12P13.33) WILD-TYPE" 
                     TCGA-HZ-8003                      TCGA-HZ-8005 
"AMP PEAK 10(12P13.33) WILD-TYPE"   "AMP PEAK 10(12P13.33) MUTATED" 
                     TCGA-HZ-8315                      TCGA-HZ-8317 
"AMP PEAK 10(12P13.33) WILD-TYPE" "AMP PEAK 10(12P13.33) WILD-TYPE" 
                     TCGA-HZ-8519                      TCGA-HZ-8636 
"AMP PEAK 10(12P13.33) WILD-TYPE" "AMP PEAK 10(12P13.33) WILD-TYPE" 
                     TCGA-HZ-8638                      TCGA-HZ-A49G 
"AMP PEAK 10(12P13.33) WILD-TYPE" "AMP PEAK 10(12P13.33) WILD-TYPE" 
                     TCGA-HZ-A49H                      TCGA-HZ-A4BH 
"AMP PEAK 10(12P13.33) WILD-TYPE" "AMP PEAK 10(12P13.33) WILD-TYPE" 
                     TCGA-HZ-A4BK                      TCGA-IB-7644 
"AMP PEAK 10(12P13.33) WILD-TYPE" "AMP PEAK 10(12P13.33) WILD-TYPE" 
                     TCGA-IB-7645                      TCGA-IB-7646 
"AMP PEAK 10(12P13.33) WILD-TYPE"   "AMP PEAK 10(12P13.33) MUTATED" 
                     TCGA-IB-7647                      TCGA-IB-7649 
"AMP PEAK 10(12P13.33) WILD-TYPE" "AMP PEAK 10(12P13.33) WILD-TYPE" 
                     TCGA-IB-7651                      TCGA-IB-7652 
"AMP PEAK 10(12P13.33) WILD-TYPE" "AMP PEAK 10(12P13.33) WILD-TYPE" 
                     TCGA-IB-7885                      TCGA-IB-7886 
"AMP PEAK 10(12P13.33) WILD-TYPE" "AMP PEAK 10(12P13.33) WILD-TYPE" 
                     TCGA-IB-7887                      TCGA-IB-7888 
"AMP PEAK 10(12P13.33) WILD-TYPE" "AMP PEAK 10(12P13.33) WILD-TYPE" 
                     TCGA-IB-7889                      TCGA-IB-7890 
"AMP PEAK 10(12P13.33) WILD-TYPE"   "AMP PEAK 10(12P13.33) MUTATED" 
                     TCGA-IB-7891                      TCGA-IB-7893 
"AMP PEAK 10(12P13.33) WILD-TYPE" "AMP PEAK 10(12P13.33) WILD-TYPE" 
                     TCGA-IB-7897                      TCGA-IB-8126 
"AMP PEAK 10(12P13.33) WILD-TYPE" "AMP PEAK 10(12P13.33) WILD-TYPE" 
                     TCGA-IB-8127                      TCGA-IB-A5SO 
  "AMP PEAK 10(12P13.33) MUTATED" "AMP PEAK 10(12P13.33) WILD-TYPE" 
                     TCGA-IB-A5SP                      TCGA-IB-A5SQ 
"AMP PEAK 10(12P13.33) WILD-TYPE" "AMP PEAK 10(12P13.33) WILD-TYPE" 
                     TCGA-IB-A5SS                      TCGA-IB-A5ST 
"AMP PEAK 10(12P13.33) WILD-TYPE" "AMP PEAK 10(12P13.33) WILD-TYPE" 
[1] "hr=" "1.8"
D8V2, continuous
                                 vv
clus                              STAGE IA STAGE IB STAGE IIA STAGE IIB
  AMP PEAK 10(12P13.33) MUTATED          0        1         0         6
  AMP PEAK 10(12P13.33) WILD-TYPE        2        2         7        35
                                 vv
clus                              STAGE III STAGE IV
  AMP PEAK 10(12P13.33) MUTATED           0        0
  AMP PEAK 10(12P13.33) WILD-TYPE         2        2
D8V3, multiclass
                                 vv
clus                              T1+T2 T3+T4
  AMP PEAK 10(12P13.33) MUTATED       1     6
  AMP PEAK 10(12P13.33) WILD-TYPE     5    45
D8V4, multiclass
       clus
vv      AMP PEAK 10(12P13.33) MUTATED AMP PEAK 10(12P13.33) WILD-TYPE
  T1+T2                             1                               5
  T3+T4                             6                              45
D8V5, binary
                                 cls
clus                               0  1
  AMP PEAK 10(12P13.33) MUTATED    1  6
  AMP PEAK 10(12P13.33) WILD-TYPE 13 37
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 10(12P13.33) MUTATED      1    6
  AMP PEAK 10(12P13.33) WILD-TYPE   13   37
   clus
vv  AMP PEAK 10(12P13.33) MUTATED AMP PEAK 10(12P13.33) WILD-TYPE
  0                             1                              13
  1                             6                              37
                                 vv
clus                              M0 M1 MX
  AMP PEAK 10(12P13.33) MUTATED    4  0  3
  AMP PEAK 10(12P13.33) WILD-TYPE 28  2 20
D8V6, multiclass
    clus
vv   AMP PEAK 10(12P13.33) MUTATED AMP PEAK 10(12P13.33) WILD-TYPE
  M0                             4                              28
  M1                             0                               2
  MX                             3                              20
D8V7, binary
                                 cls
clus                               0  1
  AMP PEAK 10(12P13.33) MUTATED    1  6
  AMP PEAK 10(12P13.33) WILD-TYPE 30 20
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 10(12P13.33) MUTATED      1    6
  AMP PEAK 10(12P13.33) WILD-TYPE   30   20
        clus
vv       AMP PEAK 10(12P13.33) MUTATED AMP PEAK 10(12P13.33) WILD-TYPE
  FEMALE                             1                              30
  MALE                               6                              20
                                 vv
clus                              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  AMP PEAK 10(12P13.33) MUTATED                                     5
  AMP PEAK 10(12P13.33) WILD-TYPE                                  46
                                 vv
clus                              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  AMP PEAK 10(12P13.33) MUTATED                                       1
  AMP PEAK 10(12P13.33) WILD-TYPE                                     3
                                 vv
clus                              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  AMP PEAK 10(12P13.33) MUTATED                                                  0
  AMP PEAK 10(12P13.33) WILD-TYPE                                                1
D8V8, multiclass
                                                  clus
vv                                                 AMP PEAK 10(12P13.33) MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                          5
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                        1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                             0
                                                  clus
vv                                                 AMP PEAK 10(12P13.33) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                           46
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                          3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                               1
D8V9, continuous
[1] "Remove cluster labels:"        "AMP PEAK 10(12P13.33) MUTATED"
clus
  AMP PEAK 10(12P13.33) MUTATED AMP PEAK 10(12P13.33) WILD-TYPE 
                              1                              13 
                     TCGA-F2-6880                      TCGA-FB-A4P5 
"AMP PEAK 10(12P13.33) WILD-TYPE" "AMP PEAK 10(12P13.33) WILD-TYPE" 
                     TCGA-H6-8124                      TCGA-H6-A45N 
"AMP PEAK 10(12P13.33) WILD-TYPE" "AMP PEAK 10(12P13.33) WILD-TYPE" 
                     TCGA-IB-7644                      TCGA-IB-7649 
"AMP PEAK 10(12P13.33) WILD-TYPE" "AMP PEAK 10(12P13.33) WILD-TYPE" 
                     TCGA-IB-7651                      TCGA-IB-7885 
"AMP PEAK 10(12P13.33) WILD-TYPE" "AMP PEAK 10(12P13.33) WILD-TYPE" 
                     TCGA-IB-7886                      TCGA-IB-7887 
"AMP PEAK 10(12P13.33) WILD-TYPE" "AMP PEAK 10(12P13.33) WILD-TYPE" 
                     TCGA-IB-7891                      TCGA-IB-8126 
"AMP PEAK 10(12P13.33) WILD-TYPE" "AMP PEAK 10(12P13.33) WILD-TYPE" 
                     TCGA-IB-A5SS 
"AMP PEAK 10(12P13.33) WILD-TYPE" 
D8V10, continuous
[1] "Remove cluster labels:"        "AMP PEAK 10(12P13.33) MUTATED"
clus
  AMP PEAK 10(12P13.33) MUTATED AMP PEAK 10(12P13.33) WILD-TYPE 
                              1                              10 
                     TCGA-FB-A4P5                      TCGA-H6-8124 
"AMP PEAK 10(12P13.33) WILD-TYPE" "AMP PEAK 10(12P13.33) WILD-TYPE" 
                     TCGA-IB-7644                      TCGA-IB-7649 
"AMP PEAK 10(12P13.33) WILD-TYPE" "AMP PEAK 10(12P13.33) WILD-TYPE" 
                     TCGA-IB-7651                      TCGA-IB-7885 
"AMP PEAK 10(12P13.33) WILD-TYPE" "AMP PEAK 10(12P13.33) WILD-TYPE" 
                     TCGA-IB-7886                      TCGA-IB-7891 
"AMP PEAK 10(12P13.33) WILD-TYPE" "AMP PEAK 10(12P13.33) WILD-TYPE" 
                     TCGA-IB-8126                      TCGA-IB-A5SS 
"AMP PEAK 10(12P13.33) WILD-TYPE" "AMP PEAK 10(12P13.33) WILD-TYPE" 
                                 vv
clus                              R0 R1 RX
  AMP PEAK 10(12P13.33) MUTATED    3  3  1
  AMP PEAK 10(12P13.33) WILD-TYPE 29 18  1
D8V11, multiclass
    clus
vv   AMP PEAK 10(12P13.33) MUTATED AMP PEAK 10(12P13.33) WILD-TYPE
  R0                             3                              29
  R1                             3                              18
  RX                             1                               1
D8V12, continuous

Clustering(9) Variable = AMP PEAK 11(12P12.1) MUTATION ANALYSIS
D9V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 11(12P12.1) MUTATED    6  5
  AMP PEAK 11(12P12.1) WILD-TYPE 29 14
  AMP PEAK 11(12P12.1) MUTATED AMP PEAK 11(12P12.1) WILD-TYPE 
                            11                             43 
  AMP PEAK 11(12P12.1) MUTATED AMP PEAK 11(12P12.1) WILD-TYPE 
                             5                             14 
$`AMP PEAK 11(12P12.1) MUTATED`
TCGA-F2-6879 TCGA-HZ-7289 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-8005 TCGA-HZ-8636 
       10.98         7.86         0.66         0.13         3.91         0.16 
TCGA-HZ-A4BK TCGA-IB-7646 TCGA-IB-7886 TCGA-IB-7890 TCGA-IB-8127 
        1.51         4.77         4.04        19.66        17.13 

$`AMP PEAK 11(12P12.1) WILD-TYPE`
TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A4P5 
        9.96        11.84         7.07         5.03         5.19         0.13 
TCGA-FB-A545 TCGA-H6-8124 TCGA-H6-A45N TCGA-HZ-7918 TCGA-HZ-7923 TCGA-HZ-7924 
        0.03        12.89         7.63         0.92         0.26        12.13 
TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8315 
       12.03         0.26         0.62         0.99         0.69         0.92 
TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH 
        0.49         0.10         2.96         0.76         1.02         5.98 
TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 
       11.41        49.38        21.86        15.35        19.82        15.65 
TCGA-IB-7885 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7891 TCGA-IB-7893 
       27.98         3.58        43.79        15.78        16.04         3.85 
TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS 
       15.95         0.56        10.82         9.83         7.20        15.12 
TCGA-IB-A5ST 
        0.26 

  AMP PEAK 11(12P12.1) MUTATED AMP PEAK 11(12P12.1) WILD-TYPE 
                          0.13                           0.03 
  AMP PEAK 11(12P12.1) MUTATED AMP PEAK 11(12P12.1) WILD-TYPE 
                         19.66                          49.38 
  AMP PEAK 11(12P12.1) MUTATED AMP PEAK 11(12P12.1) WILD-TYPE 
                          4.04                           7.07 
[1] "0.1 - 19.7 (4.0)" "0.0 - 49.4 (7.1)"
                    TCGA-F2-6879                     TCGA-F2-6880 
  "AMP PEAK 11(12P12.1) MUTATED" "AMP PEAK 11(12P12.1) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"AMP PEAK 11(12P12.1) WILD-TYPE" "AMP PEAK 11(12P12.1) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
"AMP PEAK 11(12P12.1) WILD-TYPE" "AMP PEAK 11(12P12.1) WILD-TYPE" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"AMP PEAK 11(12P12.1) WILD-TYPE" "AMP PEAK 11(12P12.1) WILD-TYPE" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
"AMP PEAK 11(12P12.1) WILD-TYPE" "AMP PEAK 11(12P12.1) WILD-TYPE" 
                    TCGA-HZ-7289                     TCGA-HZ-7918 
  "AMP PEAK 11(12P12.1) MUTATED" "AMP PEAK 11(12P12.1) WILD-TYPE" 
                    TCGA-HZ-7919                     TCGA-HZ-7922 
  "AMP PEAK 11(12P12.1) MUTATED"   "AMP PEAK 11(12P12.1) MUTATED" 
                    TCGA-HZ-7923                     TCGA-HZ-7924 
"AMP PEAK 11(12P12.1) WILD-TYPE" "AMP PEAK 11(12P12.1) WILD-TYPE" 
                    TCGA-HZ-7925                     TCGA-HZ-7926 
"AMP PEAK 11(12P12.1) WILD-TYPE" "AMP PEAK 11(12P12.1) WILD-TYPE" 
                    TCGA-HZ-8001                     TCGA-HZ-8002 
"AMP PEAK 11(12P12.1) WILD-TYPE" "AMP PEAK 11(12P12.1) WILD-TYPE" 
                    TCGA-HZ-8003                     TCGA-HZ-8005 
"AMP PEAK 11(12P12.1) WILD-TYPE"   "AMP PEAK 11(12P12.1) MUTATED" 
                    TCGA-HZ-8315                     TCGA-HZ-8317 
"AMP PEAK 11(12P12.1) WILD-TYPE" "AMP PEAK 11(12P12.1) WILD-TYPE" 
                    TCGA-HZ-8519                     TCGA-HZ-8636 
"AMP PEAK 11(12P12.1) WILD-TYPE"   "AMP PEAK 11(12P12.1) MUTATED" 
                    TCGA-HZ-8638                     TCGA-HZ-A49G 
"AMP PEAK 11(12P12.1) WILD-TYPE" "AMP PEAK 11(12P12.1) WILD-TYPE" 
                    TCGA-HZ-A49H                     TCGA-HZ-A4BH 
"AMP PEAK 11(12P12.1) WILD-TYPE" "AMP PEAK 11(12P12.1) WILD-TYPE" 
                    TCGA-HZ-A4BK                     TCGA-IB-7644 
  "AMP PEAK 11(12P12.1) MUTATED" "AMP PEAK 11(12P12.1) WILD-TYPE" 
                    TCGA-IB-7645                     TCGA-IB-7646 
"AMP PEAK 11(12P12.1) WILD-TYPE"   "AMP PEAK 11(12P12.1) MUTATED" 
                    TCGA-IB-7647                     TCGA-IB-7649 
"AMP PEAK 11(12P12.1) WILD-TYPE" "AMP PEAK 11(12P12.1) WILD-TYPE" 
                    TCGA-IB-7651                     TCGA-IB-7652 
"AMP PEAK 11(12P12.1) WILD-TYPE" "AMP PEAK 11(12P12.1) WILD-TYPE" 
                    TCGA-IB-7885                     TCGA-IB-7886 
"AMP PEAK 11(12P12.1) WILD-TYPE"   "AMP PEAK 11(12P12.1) MUTATED" 
                    TCGA-IB-7887                     TCGA-IB-7888 
"AMP PEAK 11(12P12.1) WILD-TYPE" "AMP PEAK 11(12P12.1) WILD-TYPE" 
                    TCGA-IB-7889                     TCGA-IB-7890 
"AMP PEAK 11(12P12.1) WILD-TYPE"   "AMP PEAK 11(12P12.1) MUTATED" 
                    TCGA-IB-7891                     TCGA-IB-7893 
"AMP PEAK 11(12P12.1) WILD-TYPE" "AMP PEAK 11(12P12.1) WILD-TYPE" 
                    TCGA-IB-7897                     TCGA-IB-8126 
"AMP PEAK 11(12P12.1) WILD-TYPE" "AMP PEAK 11(12P12.1) WILD-TYPE" 
                    TCGA-IB-8127                     TCGA-IB-A5SO 
  "AMP PEAK 11(12P12.1) MUTATED" "AMP PEAK 11(12P12.1) WILD-TYPE" 
                    TCGA-IB-A5SP                     TCGA-IB-A5SQ 
"AMP PEAK 11(12P12.1) WILD-TYPE" "AMP PEAK 11(12P12.1) WILD-TYPE" 
                    TCGA-IB-A5SS                     TCGA-IB-A5ST 
"AMP PEAK 11(12P12.1) WILD-TYPE" "AMP PEAK 11(12P12.1) WILD-TYPE" 
                    TCGA-F2-6879                     TCGA-F2-6880 
  "AMP PEAK 11(12P12.1) MUTATED" "AMP PEAK 11(12P12.1) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"AMP PEAK 11(12P12.1) WILD-TYPE" "AMP PEAK 11(12P12.1) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
"AMP PEAK 11(12P12.1) WILD-TYPE" "AMP PEAK 11(12P12.1) WILD-TYPE" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"AMP PEAK 11(12P12.1) WILD-TYPE" "AMP PEAK 11(12P12.1) WILD-TYPE" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
"AMP PEAK 11(12P12.1) WILD-TYPE" "AMP PEAK 11(12P12.1) WILD-TYPE" 
                    TCGA-HZ-7289                     TCGA-HZ-7918 
  "AMP PEAK 11(12P12.1) MUTATED" "AMP PEAK 11(12P12.1) WILD-TYPE" 
                    TCGA-HZ-7919                     TCGA-HZ-7922 
  "AMP PEAK 11(12P12.1) MUTATED"   "AMP PEAK 11(12P12.1) MUTATED" 
                    TCGA-HZ-7923                     TCGA-HZ-7924 
"AMP PEAK 11(12P12.1) WILD-TYPE" "AMP PEAK 11(12P12.1) WILD-TYPE" 
                    TCGA-HZ-7925                     TCGA-HZ-7926 
"AMP PEAK 11(12P12.1) WILD-TYPE" "AMP PEAK 11(12P12.1) WILD-TYPE" 
                    TCGA-HZ-8001                     TCGA-HZ-8002 
"AMP PEAK 11(12P12.1) WILD-TYPE" "AMP PEAK 11(12P12.1) WILD-TYPE" 
                    TCGA-HZ-8003                     TCGA-HZ-8005 
"AMP PEAK 11(12P12.1) WILD-TYPE"   "AMP PEAK 11(12P12.1) MUTATED" 
                    TCGA-HZ-8315                     TCGA-HZ-8317 
"AMP PEAK 11(12P12.1) WILD-TYPE" "AMP PEAK 11(12P12.1) WILD-TYPE" 
                    TCGA-HZ-8519                     TCGA-HZ-8636 
"AMP PEAK 11(12P12.1) WILD-TYPE"   "AMP PEAK 11(12P12.1) MUTATED" 
                    TCGA-HZ-8638                     TCGA-HZ-A49G 
"AMP PEAK 11(12P12.1) WILD-TYPE" "AMP PEAK 11(12P12.1) WILD-TYPE" 
                    TCGA-HZ-A49H                     TCGA-HZ-A4BH 
"AMP PEAK 11(12P12.1) WILD-TYPE" "AMP PEAK 11(12P12.1) WILD-TYPE" 
                    TCGA-HZ-A4BK                     TCGA-IB-7644 
  "AMP PEAK 11(12P12.1) MUTATED" "AMP PEAK 11(12P12.1) WILD-TYPE" 
                    TCGA-IB-7645                     TCGA-IB-7646 
"AMP PEAK 11(12P12.1) WILD-TYPE"   "AMP PEAK 11(12P12.1) MUTATED" 
                    TCGA-IB-7647                     TCGA-IB-7649 
"AMP PEAK 11(12P12.1) WILD-TYPE" "AMP PEAK 11(12P12.1) WILD-TYPE" 
                    TCGA-IB-7651                     TCGA-IB-7652 
"AMP PEAK 11(12P12.1) WILD-TYPE" "AMP PEAK 11(12P12.1) WILD-TYPE" 
                    TCGA-IB-7885                     TCGA-IB-7886 
"AMP PEAK 11(12P12.1) WILD-TYPE"   "AMP PEAK 11(12P12.1) MUTATED" 
                    TCGA-IB-7887                     TCGA-IB-7888 
"AMP PEAK 11(12P12.1) WILD-TYPE" "AMP PEAK 11(12P12.1) WILD-TYPE" 
                    TCGA-IB-7889                     TCGA-IB-7890 
"AMP PEAK 11(12P12.1) WILD-TYPE"   "AMP PEAK 11(12P12.1) MUTATED" 
                    TCGA-IB-7891                     TCGA-IB-7893 
"AMP PEAK 11(12P12.1) WILD-TYPE" "AMP PEAK 11(12P12.1) WILD-TYPE" 
                    TCGA-IB-7897                     TCGA-IB-8126 
"AMP PEAK 11(12P12.1) WILD-TYPE" "AMP PEAK 11(12P12.1) WILD-TYPE" 
                    TCGA-IB-8127                     TCGA-IB-A5SO 
  "AMP PEAK 11(12P12.1) MUTATED" "AMP PEAK 11(12P12.1) WILD-TYPE" 
                    TCGA-IB-A5SP                     TCGA-IB-A5SQ 
"AMP PEAK 11(12P12.1) WILD-TYPE" "AMP PEAK 11(12P12.1) WILD-TYPE" 
                    TCGA-IB-A5SS                     TCGA-IB-A5ST 
"AMP PEAK 11(12P12.1) WILD-TYPE" "AMP PEAK 11(12P12.1) WILD-TYPE" 
                    TCGA-F2-6879                     TCGA-F2-6880 
  "AMP PEAK 11(12P12.1) MUTATED" "AMP PEAK 11(12P12.1) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"AMP PEAK 11(12P12.1) WILD-TYPE" "AMP PEAK 11(12P12.1) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
"AMP PEAK 11(12P12.1) WILD-TYPE" "AMP PEAK 11(12P12.1) WILD-TYPE" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"AMP PEAK 11(12P12.1) WILD-TYPE" "AMP PEAK 11(12P12.1) WILD-TYPE" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
"AMP PEAK 11(12P12.1) WILD-TYPE" "AMP PEAK 11(12P12.1) WILD-TYPE" 
                    TCGA-HZ-7289                     TCGA-HZ-7918 
  "AMP PEAK 11(12P12.1) MUTATED" "AMP PEAK 11(12P12.1) WILD-TYPE" 
                    TCGA-HZ-7919                     TCGA-HZ-7922 
  "AMP PEAK 11(12P12.1) MUTATED"   "AMP PEAK 11(12P12.1) MUTATED" 
                    TCGA-HZ-7923                     TCGA-HZ-7924 
"AMP PEAK 11(12P12.1) WILD-TYPE" "AMP PEAK 11(12P12.1) WILD-TYPE" 
                    TCGA-HZ-7925                     TCGA-HZ-7926 
"AMP PEAK 11(12P12.1) WILD-TYPE" "AMP PEAK 11(12P12.1) WILD-TYPE" 
                    TCGA-HZ-8001                     TCGA-HZ-8002 
"AMP PEAK 11(12P12.1) WILD-TYPE" "AMP PEAK 11(12P12.1) WILD-TYPE" 
                    TCGA-HZ-8003                     TCGA-HZ-8005 
"AMP PEAK 11(12P12.1) WILD-TYPE"   "AMP PEAK 11(12P12.1) MUTATED" 
                    TCGA-HZ-8315                     TCGA-HZ-8317 
"AMP PEAK 11(12P12.1) WILD-TYPE" "AMP PEAK 11(12P12.1) WILD-TYPE" 
                    TCGA-HZ-8519                     TCGA-HZ-8636 
"AMP PEAK 11(12P12.1) WILD-TYPE"   "AMP PEAK 11(12P12.1) MUTATED" 
                    TCGA-HZ-8638                     TCGA-HZ-A49G 
"AMP PEAK 11(12P12.1) WILD-TYPE" "AMP PEAK 11(12P12.1) WILD-TYPE" 
                    TCGA-HZ-A49H                     TCGA-HZ-A4BH 
"AMP PEAK 11(12P12.1) WILD-TYPE" "AMP PEAK 11(12P12.1) WILD-TYPE" 
                    TCGA-HZ-A4BK                     TCGA-IB-7644 
  "AMP PEAK 11(12P12.1) MUTATED" "AMP PEAK 11(12P12.1) WILD-TYPE" 
                    TCGA-IB-7645                     TCGA-IB-7646 
"AMP PEAK 11(12P12.1) WILD-TYPE"   "AMP PEAK 11(12P12.1) MUTATED" 
                    TCGA-IB-7647                     TCGA-IB-7649 
"AMP PEAK 11(12P12.1) WILD-TYPE" "AMP PEAK 11(12P12.1) WILD-TYPE" 
                    TCGA-IB-7651                     TCGA-IB-7652 
"AMP PEAK 11(12P12.1) WILD-TYPE" "AMP PEAK 11(12P12.1) WILD-TYPE" 
                    TCGA-IB-7885                     TCGA-IB-7886 
"AMP PEAK 11(12P12.1) WILD-TYPE"   "AMP PEAK 11(12P12.1) MUTATED" 
                    TCGA-IB-7887                     TCGA-IB-7888 
"AMP PEAK 11(12P12.1) WILD-TYPE" "AMP PEAK 11(12P12.1) WILD-TYPE" 
                    TCGA-IB-7889                     TCGA-IB-7890 
"AMP PEAK 11(12P12.1) WILD-TYPE"   "AMP PEAK 11(12P12.1) MUTATED" 
                    TCGA-IB-7891                     TCGA-IB-7893 
"AMP PEAK 11(12P12.1) WILD-TYPE" "AMP PEAK 11(12P12.1) WILD-TYPE" 
                    TCGA-IB-7897                     TCGA-IB-8126 
"AMP PEAK 11(12P12.1) WILD-TYPE" "AMP PEAK 11(12P12.1) WILD-TYPE" 
                    TCGA-IB-8127                     TCGA-IB-A5SO 
  "AMP PEAK 11(12P12.1) MUTATED" "AMP PEAK 11(12P12.1) WILD-TYPE" 
                    TCGA-IB-A5SP                     TCGA-IB-A5SQ 
"AMP PEAK 11(12P12.1) WILD-TYPE" "AMP PEAK 11(12P12.1) WILD-TYPE" 
                    TCGA-IB-A5SS                     TCGA-IB-A5ST 
"AMP PEAK 11(12P12.1) WILD-TYPE" "AMP PEAK 11(12P12.1) WILD-TYPE" 
[1] "hr=" "2.3"
D9V2, continuous
                                vv
clus                             STAGE IA STAGE IB STAGE IIA STAGE IIB
  AMP PEAK 11(12P12.1) MUTATED          0        1         0        10
  AMP PEAK 11(12P12.1) WILD-TYPE        2        2         7        31
                                vv
clus                             STAGE III STAGE IV
  AMP PEAK 11(12P12.1) MUTATED           0        1
  AMP PEAK 11(12P12.1) WILD-TYPE         2        1
D9V3, multiclass
                                vv
clus                             T1+T2 T3+T4
  AMP PEAK 11(12P12.1) MUTATED       1    11
  AMP PEAK 11(12P12.1) WILD-TYPE     5    40
D9V4, multiclass
       clus
vv      AMP PEAK 11(12P12.1) MUTATED AMP PEAK 11(12P12.1) WILD-TYPE
  T1+T2                            1                              5
  T3+T4                           11                             40
D9V5, binary
                                cls
clus                              0  1
  AMP PEAK 11(12P12.1) MUTATED    2 10
  AMP PEAK 11(12P12.1) WILD-TYPE 12 33
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 11(12P12.1) MUTATED      2   10
  AMP PEAK 11(12P12.1) WILD-TYPE   12   33
   clus
vv  AMP PEAK 11(12P12.1) MUTATED AMP PEAK 11(12P12.1) WILD-TYPE
  0                            2                             12
  1                           10                             33
                                vv
clus                             M0 M1 MX
  AMP PEAK 11(12P12.1) MUTATED    6  1  5
  AMP PEAK 11(12P12.1) WILD-TYPE 26  1 18
D9V6, multiclass
    clus
vv   AMP PEAK 11(12P12.1) MUTATED AMP PEAK 11(12P12.1) WILD-TYPE
  M0                            6                             26
  M1                            1                              1
  MX                            5                             18
D9V7, binary
                                cls
clus                              0  1
  AMP PEAK 11(12P12.1) MUTATED    3  9
  AMP PEAK 11(12P12.1) WILD-TYPE 28 17
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 11(12P12.1) MUTATED      3    9
  AMP PEAK 11(12P12.1) WILD-TYPE   28   17
        clus
vv       AMP PEAK 11(12P12.1) MUTATED AMP PEAK 11(12P12.1) WILD-TYPE
  FEMALE                            3                             28
  MALE                              9                             17
                                vv
clus                             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  AMP PEAK 11(12P12.1) MUTATED                                     9
  AMP PEAK 11(12P12.1) WILD-TYPE                                  42
                                vv
clus                             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  AMP PEAK 11(12P12.1) MUTATED                                       2
  AMP PEAK 11(12P12.1) WILD-TYPE                                     2
                                vv
clus                             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  AMP PEAK 11(12P12.1) MUTATED                                                  0
  AMP PEAK 11(12P12.1) WILD-TYPE                                                1
D9V8, multiclass
                                                  clus
vv                                                 AMP PEAK 11(12P12.1) MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                         9
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                       2
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                            0
                                                  clus
vv                                                 AMP PEAK 11(12P12.1) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                          42
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                         2
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                              1
D9V9, continuous
[1] "Remove cluster labels:"       "AMP PEAK 11(12P12.1) MUTATED"
clus
  AMP PEAK 11(12P12.1) MUTATED AMP PEAK 11(12P12.1) WILD-TYPE 
                             2                             12 
                    TCGA-F2-6880                     TCGA-FB-A4P5 
"AMP PEAK 11(12P12.1) WILD-TYPE" "AMP PEAK 11(12P12.1) WILD-TYPE" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
"AMP PEAK 11(12P12.1) WILD-TYPE" "AMP PEAK 11(12P12.1) WILD-TYPE" 
                    TCGA-IB-7644                     TCGA-IB-7649 
"AMP PEAK 11(12P12.1) WILD-TYPE" "AMP PEAK 11(12P12.1) WILD-TYPE" 
                    TCGA-IB-7651                     TCGA-IB-7885 
"AMP PEAK 11(12P12.1) WILD-TYPE" "AMP PEAK 11(12P12.1) WILD-TYPE" 
                    TCGA-IB-7887                     TCGA-IB-7891 
"AMP PEAK 11(12P12.1) WILD-TYPE" "AMP PEAK 11(12P12.1) WILD-TYPE" 
                    TCGA-IB-8126                     TCGA-IB-A5SS 
"AMP PEAK 11(12P12.1) WILD-TYPE" "AMP PEAK 11(12P12.1) WILD-TYPE" 
D9V10, continuous
[1] "Remove cluster labels:"       "AMP PEAK 11(12P12.1) MUTATED"
clus
  AMP PEAK 11(12P12.1) MUTATED AMP PEAK 11(12P12.1) WILD-TYPE 
                             2                              9 
                    TCGA-FB-A4P5                     TCGA-H6-8124 
"AMP PEAK 11(12P12.1) WILD-TYPE" "AMP PEAK 11(12P12.1) WILD-TYPE" 
                    TCGA-IB-7644                     TCGA-IB-7649 
"AMP PEAK 11(12P12.1) WILD-TYPE" "AMP PEAK 11(12P12.1) WILD-TYPE" 
                    TCGA-IB-7651                     TCGA-IB-7885 
"AMP PEAK 11(12P12.1) WILD-TYPE" "AMP PEAK 11(12P12.1) WILD-TYPE" 
                    TCGA-IB-7891                     TCGA-IB-8126 
"AMP PEAK 11(12P12.1) WILD-TYPE" "AMP PEAK 11(12P12.1) WILD-TYPE" 
                    TCGA-IB-A5SS 
"AMP PEAK 11(12P12.1) WILD-TYPE" 
                                vv
clus                             R0 R1 RX
  AMP PEAK 11(12P12.1) MUTATED    3  8  1
  AMP PEAK 11(12P12.1) WILD-TYPE 29 13  1
D9V11, multiclass
    clus
vv   AMP PEAK 11(12P12.1) MUTATED AMP PEAK 11(12P12.1) WILD-TYPE
  R0                            3                             29
  R1                            8                             13
  RX                            1                              1
D9V12, continuous

Clustering(10) Variable = AMP PEAK 12(12P11.21) MUTATION ANALYSIS
D10V1, survival
                                 sevent
clus2                              0  1
  AMP PEAK 12(12P11.21) MUTATED    6  4
  AMP PEAK 12(12P11.21) WILD-TYPE 29 15
  AMP PEAK 12(12P11.21) MUTATED AMP PEAK 12(12P11.21) WILD-TYPE 
                             10                              44 
  AMP PEAK 12(12P11.21) MUTATED AMP PEAK 12(12P11.21) WILD-TYPE 
                              4                              15 
$`AMP PEAK 12(12P11.21) MUTATED`
TCGA-HZ-7289 TCGA-HZ-7922 TCGA-HZ-8005 TCGA-HZ-8636 TCGA-HZ-A4BH TCGA-HZ-A4BK 
        7.86         0.13         3.91         0.16         5.98         1.51 
TCGA-IB-7646 TCGA-IB-7886 TCGA-IB-7890 TCGA-IB-8127 
        4.77         4.04        19.66        17.13 

$`AMP PEAK 12(12P11.21) WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.96        11.84         7.07         5.03         5.19 
TCGA-FB-A4P5 TCGA-FB-A545 TCGA-H6-8124 TCGA-H6-A45N TCGA-HZ-7918 TCGA-HZ-7919 
        0.13         0.03        12.89         7.63         0.92         0.66 
TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 
        0.26        12.13        12.03         0.26         0.62         0.99 
TCGA-HZ-8003 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8638 TCGA-HZ-A49G 
        0.69         0.92         0.49         0.10         2.96         0.76 
TCGA-HZ-A49H TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 
        1.02        11.41        49.38        21.86        15.35        19.82 
TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7891 
       15.65        27.98         3.58        43.79        15.78        16.04 
TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ 
        3.85        15.95         0.56        10.82         9.83         7.20 
TCGA-IB-A5SS TCGA-IB-A5ST 
       15.12         0.26 

  AMP PEAK 12(12P11.21) MUTATED AMP PEAK 12(12P11.21) WILD-TYPE 
                           0.13                            0.03 
  AMP PEAK 12(12P11.21) MUTATED AMP PEAK 12(12P11.21) WILD-TYPE 
                          19.66                           49.38 
  AMP PEAK 12(12P11.21) MUTATED AMP PEAK 12(12P11.21) WILD-TYPE 
                          4.405                           7.135 
[1] "0.1 - 19.7 (4.4)" "0.0 - 49.4 (7.1)"
                     TCGA-F2-6879                      TCGA-F2-6880 
"AMP PEAK 12(12P11.21) WILD-TYPE" "AMP PEAK 12(12P11.21) WILD-TYPE" 
                     TCGA-F2-7273                      TCGA-F2-7276 
"AMP PEAK 12(12P11.21) WILD-TYPE" "AMP PEAK 12(12P11.21) WILD-TYPE" 
                     TCGA-F2-A44G                      TCGA-F2-A44H 
"AMP PEAK 12(12P11.21) WILD-TYPE" "AMP PEAK 12(12P11.21) WILD-TYPE" 
                     TCGA-FB-A4P5                      TCGA-FB-A545 
"AMP PEAK 12(12P11.21) WILD-TYPE" "AMP PEAK 12(12P11.21) WILD-TYPE" 
                     TCGA-H6-8124                      TCGA-H6-A45N 
"AMP PEAK 12(12P11.21) WILD-TYPE" "AMP PEAK 12(12P11.21) WILD-TYPE" 
                     TCGA-HZ-7289                      TCGA-HZ-7918 
  "AMP PEAK 12(12P11.21) MUTATED" "AMP PEAK 12(12P11.21) WILD-TYPE" 
                     TCGA-HZ-7919                      TCGA-HZ-7922 
"AMP PEAK 12(12P11.21) WILD-TYPE"   "AMP PEAK 12(12P11.21) MUTATED" 
                     TCGA-HZ-7923                      TCGA-HZ-7924 
"AMP PEAK 12(12P11.21) WILD-TYPE" "AMP PEAK 12(12P11.21) WILD-TYPE" 
                     TCGA-HZ-7925                      TCGA-HZ-7926 
"AMP PEAK 12(12P11.21) WILD-TYPE" "AMP PEAK 12(12P11.21) WILD-TYPE" 
                     TCGA-HZ-8001                      TCGA-HZ-8002 
"AMP PEAK 12(12P11.21) WILD-TYPE" "AMP PEAK 12(12P11.21) WILD-TYPE" 
                     TCGA-HZ-8003                      TCGA-HZ-8005 
"AMP PEAK 12(12P11.21) WILD-TYPE"   "AMP PEAK 12(12P11.21) MUTATED" 
                     TCGA-HZ-8315                      TCGA-HZ-8317 
"AMP PEAK 12(12P11.21) WILD-TYPE" "AMP PEAK 12(12P11.21) WILD-TYPE" 
                     TCGA-HZ-8519                      TCGA-HZ-8636 
"AMP PEAK 12(12P11.21) WILD-TYPE"   "AMP PEAK 12(12P11.21) MUTATED" 
                     TCGA-HZ-8638                      TCGA-HZ-A49G 
"AMP PEAK 12(12P11.21) WILD-TYPE" "AMP PEAK 12(12P11.21) WILD-TYPE" 
                     TCGA-HZ-A49H                      TCGA-HZ-A4BH 
"AMP PEAK 12(12P11.21) WILD-TYPE"   "AMP PEAK 12(12P11.21) MUTATED" 
                     TCGA-HZ-A4BK                      TCGA-IB-7644 
  "AMP PEAK 12(12P11.21) MUTATED" "AMP PEAK 12(12P11.21) WILD-TYPE" 
                     TCGA-IB-7645                      TCGA-IB-7646 
"AMP PEAK 12(12P11.21) WILD-TYPE"   "AMP PEAK 12(12P11.21) MUTATED" 
                     TCGA-IB-7647                      TCGA-IB-7649 
"AMP PEAK 12(12P11.21) WILD-TYPE" "AMP PEAK 12(12P11.21) WILD-TYPE" 
                     TCGA-IB-7651                      TCGA-IB-7652 
"AMP PEAK 12(12P11.21) WILD-TYPE" "AMP PEAK 12(12P11.21) WILD-TYPE" 
                     TCGA-IB-7885                      TCGA-IB-7886 
"AMP PEAK 12(12P11.21) WILD-TYPE"   "AMP PEAK 12(12P11.21) MUTATED" 
                     TCGA-IB-7887                      TCGA-IB-7888 
"AMP PEAK 12(12P11.21) WILD-TYPE" "AMP PEAK 12(12P11.21) WILD-TYPE" 
                     TCGA-IB-7889                      TCGA-IB-7890 
"AMP PEAK 12(12P11.21) WILD-TYPE"   "AMP PEAK 12(12P11.21) MUTATED" 
                     TCGA-IB-7891                      TCGA-IB-7893 
"AMP PEAK 12(12P11.21) WILD-TYPE" "AMP PEAK 12(12P11.21) WILD-TYPE" 
                     TCGA-IB-7897                      TCGA-IB-8126 
"AMP PEAK 12(12P11.21) WILD-TYPE" "AMP PEAK 12(12P11.21) WILD-TYPE" 
                     TCGA-IB-8127                      TCGA-IB-A5SO 
  "AMP PEAK 12(12P11.21) MUTATED" "AMP PEAK 12(12P11.21) WILD-TYPE" 
                     TCGA-IB-A5SP                      TCGA-IB-A5SQ 
"AMP PEAK 12(12P11.21) WILD-TYPE" "AMP PEAK 12(12P11.21) WILD-TYPE" 
                     TCGA-IB-A5SS                      TCGA-IB-A5ST 
"AMP PEAK 12(12P11.21) WILD-TYPE" "AMP PEAK 12(12P11.21) WILD-TYPE" 
                     TCGA-F2-6879                      TCGA-F2-6880 
"AMP PEAK 12(12P11.21) WILD-TYPE" "AMP PEAK 12(12P11.21) WILD-TYPE" 
                     TCGA-F2-7273                      TCGA-F2-7276 
"AMP PEAK 12(12P11.21) WILD-TYPE" "AMP PEAK 12(12P11.21) WILD-TYPE" 
                     TCGA-F2-A44G                      TCGA-F2-A44H 
"AMP PEAK 12(12P11.21) WILD-TYPE" "AMP PEAK 12(12P11.21) WILD-TYPE" 
                     TCGA-FB-A4P5                      TCGA-FB-A545 
"AMP PEAK 12(12P11.21) WILD-TYPE" "AMP PEAK 12(12P11.21) WILD-TYPE" 
                     TCGA-H6-8124                      TCGA-H6-A45N 
"AMP PEAK 12(12P11.21) WILD-TYPE" "AMP PEAK 12(12P11.21) WILD-TYPE" 
                     TCGA-HZ-7289                      TCGA-HZ-7918 
  "AMP PEAK 12(12P11.21) MUTATED" "AMP PEAK 12(12P11.21) WILD-TYPE" 
                     TCGA-HZ-7919                      TCGA-HZ-7922 
"AMP PEAK 12(12P11.21) WILD-TYPE"   "AMP PEAK 12(12P11.21) MUTATED" 
                     TCGA-HZ-7923                      TCGA-HZ-7924 
"AMP PEAK 12(12P11.21) WILD-TYPE" "AMP PEAK 12(12P11.21) WILD-TYPE" 
                     TCGA-HZ-7925                      TCGA-HZ-7926 
"AMP PEAK 12(12P11.21) WILD-TYPE" "AMP PEAK 12(12P11.21) WILD-TYPE" 
                     TCGA-HZ-8001                      TCGA-HZ-8002 
"AMP PEAK 12(12P11.21) WILD-TYPE" "AMP PEAK 12(12P11.21) WILD-TYPE" 
                     TCGA-HZ-8003                      TCGA-HZ-8005 
"AMP PEAK 12(12P11.21) WILD-TYPE"   "AMP PEAK 12(12P11.21) MUTATED" 
                     TCGA-HZ-8315                      TCGA-HZ-8317 
"AMP PEAK 12(12P11.21) WILD-TYPE" "AMP PEAK 12(12P11.21) WILD-TYPE" 
                     TCGA-HZ-8519                      TCGA-HZ-8636 
"AMP PEAK 12(12P11.21) WILD-TYPE"   "AMP PEAK 12(12P11.21) MUTATED" 
                     TCGA-HZ-8638                      TCGA-HZ-A49G 
"AMP PEAK 12(12P11.21) WILD-TYPE" "AMP PEAK 12(12P11.21) WILD-TYPE" 
                     TCGA-HZ-A49H                      TCGA-HZ-A4BH 
"AMP PEAK 12(12P11.21) WILD-TYPE"   "AMP PEAK 12(12P11.21) MUTATED" 
                     TCGA-HZ-A4BK                      TCGA-IB-7644 
  "AMP PEAK 12(12P11.21) MUTATED" "AMP PEAK 12(12P11.21) WILD-TYPE" 
                     TCGA-IB-7645                      TCGA-IB-7646 
"AMP PEAK 12(12P11.21) WILD-TYPE"   "AMP PEAK 12(12P11.21) MUTATED" 
                     TCGA-IB-7647                      TCGA-IB-7649 
"AMP PEAK 12(12P11.21) WILD-TYPE" "AMP PEAK 12(12P11.21) WILD-TYPE" 
                     TCGA-IB-7651                      TCGA-IB-7652 
"AMP PEAK 12(12P11.21) WILD-TYPE" "AMP PEAK 12(12P11.21) WILD-TYPE" 
                     TCGA-IB-7885                      TCGA-IB-7886 
"AMP PEAK 12(12P11.21) WILD-TYPE"   "AMP PEAK 12(12P11.21) MUTATED" 
                     TCGA-IB-7887                      TCGA-IB-7888 
"AMP PEAK 12(12P11.21) WILD-TYPE" "AMP PEAK 12(12P11.21) WILD-TYPE" 
                     TCGA-IB-7889                      TCGA-IB-7890 
"AMP PEAK 12(12P11.21) WILD-TYPE"   "AMP PEAK 12(12P11.21) MUTATED" 
                     TCGA-IB-7891                      TCGA-IB-7893 
"AMP PEAK 12(12P11.21) WILD-TYPE" "AMP PEAK 12(12P11.21) WILD-TYPE" 
                     TCGA-IB-7897                      TCGA-IB-8126 
"AMP PEAK 12(12P11.21) WILD-TYPE" "AMP PEAK 12(12P11.21) WILD-TYPE" 
                     TCGA-IB-8127                      TCGA-IB-A5SO 
  "AMP PEAK 12(12P11.21) MUTATED" "AMP PEAK 12(12P11.21) WILD-TYPE" 
                     TCGA-IB-A5SP                      TCGA-IB-A5SQ 
"AMP PEAK 12(12P11.21) WILD-TYPE" "AMP PEAK 12(12P11.21) WILD-TYPE" 
                     TCGA-IB-A5SS                      TCGA-IB-A5ST 
"AMP PEAK 12(12P11.21) WILD-TYPE" "AMP PEAK 12(12P11.21) WILD-TYPE" 
                     TCGA-F2-6879                      TCGA-F2-6880 
"AMP PEAK 12(12P11.21) WILD-TYPE" "AMP PEAK 12(12P11.21) WILD-TYPE" 
                     TCGA-F2-7273                      TCGA-F2-7276 
"AMP PEAK 12(12P11.21) WILD-TYPE" "AMP PEAK 12(12P11.21) WILD-TYPE" 
                     TCGA-F2-A44G                      TCGA-F2-A44H 
"AMP PEAK 12(12P11.21) WILD-TYPE" "AMP PEAK 12(12P11.21) WILD-TYPE" 
                     TCGA-FB-A4P5                      TCGA-FB-A545 
"AMP PEAK 12(12P11.21) WILD-TYPE" "AMP PEAK 12(12P11.21) WILD-TYPE" 
                     TCGA-H6-8124                      TCGA-H6-A45N 
"AMP PEAK 12(12P11.21) WILD-TYPE" "AMP PEAK 12(12P11.21) WILD-TYPE" 
                     TCGA-HZ-7289                      TCGA-HZ-7918 
  "AMP PEAK 12(12P11.21) MUTATED" "AMP PEAK 12(12P11.21) WILD-TYPE" 
                     TCGA-HZ-7919                      TCGA-HZ-7922 
"AMP PEAK 12(12P11.21) WILD-TYPE"   "AMP PEAK 12(12P11.21) MUTATED" 
                     TCGA-HZ-7923                      TCGA-HZ-7924 
"AMP PEAK 12(12P11.21) WILD-TYPE" "AMP PEAK 12(12P11.21) WILD-TYPE" 
                     TCGA-HZ-7925                      TCGA-HZ-7926 
"AMP PEAK 12(12P11.21) WILD-TYPE" "AMP PEAK 12(12P11.21) WILD-TYPE" 
                     TCGA-HZ-8001                      TCGA-HZ-8002 
"AMP PEAK 12(12P11.21) WILD-TYPE" "AMP PEAK 12(12P11.21) WILD-TYPE" 
                     TCGA-HZ-8003                      TCGA-HZ-8005 
"AMP PEAK 12(12P11.21) WILD-TYPE"   "AMP PEAK 12(12P11.21) MUTATED" 
                     TCGA-HZ-8315                      TCGA-HZ-8317 
"AMP PEAK 12(12P11.21) WILD-TYPE" "AMP PEAK 12(12P11.21) WILD-TYPE" 
                     TCGA-HZ-8519                      TCGA-HZ-8636 
"AMP PEAK 12(12P11.21) WILD-TYPE"   "AMP PEAK 12(12P11.21) MUTATED" 
                     TCGA-HZ-8638                      TCGA-HZ-A49G 
"AMP PEAK 12(12P11.21) WILD-TYPE" "AMP PEAK 12(12P11.21) WILD-TYPE" 
                     TCGA-HZ-A49H                      TCGA-HZ-A4BH 
"AMP PEAK 12(12P11.21) WILD-TYPE"   "AMP PEAK 12(12P11.21) MUTATED" 
                     TCGA-HZ-A4BK                      TCGA-IB-7644 
  "AMP PEAK 12(12P11.21) MUTATED" "AMP PEAK 12(12P11.21) WILD-TYPE" 
                     TCGA-IB-7645                      TCGA-IB-7646 
"AMP PEAK 12(12P11.21) WILD-TYPE"   "AMP PEAK 12(12P11.21) MUTATED" 
                     TCGA-IB-7647                      TCGA-IB-7649 
"AMP PEAK 12(12P11.21) WILD-TYPE" "AMP PEAK 12(12P11.21) WILD-TYPE" 
                     TCGA-IB-7651                      TCGA-IB-7652 
"AMP PEAK 12(12P11.21) WILD-TYPE" "AMP PEAK 12(12P11.21) WILD-TYPE" 
                     TCGA-IB-7885                      TCGA-IB-7886 
"AMP PEAK 12(12P11.21) WILD-TYPE"   "AMP PEAK 12(12P11.21) MUTATED" 
                     TCGA-IB-7887                      TCGA-IB-7888 
"AMP PEAK 12(12P11.21) WILD-TYPE" "AMP PEAK 12(12P11.21) WILD-TYPE" 
                     TCGA-IB-7889                      TCGA-IB-7890 
"AMP PEAK 12(12P11.21) WILD-TYPE"   "AMP PEAK 12(12P11.21) MUTATED" 
                     TCGA-IB-7891                      TCGA-IB-7893 
"AMP PEAK 12(12P11.21) WILD-TYPE" "AMP PEAK 12(12P11.21) WILD-TYPE" 
                     TCGA-IB-7897                      TCGA-IB-8126 
"AMP PEAK 12(12P11.21) WILD-TYPE" "AMP PEAK 12(12P11.21) WILD-TYPE" 
                     TCGA-IB-8127                      TCGA-IB-A5SO 
  "AMP PEAK 12(12P11.21) MUTATED" "AMP PEAK 12(12P11.21) WILD-TYPE" 
                     TCGA-IB-A5SP                      TCGA-IB-A5SQ 
"AMP PEAK 12(12P11.21) WILD-TYPE" "AMP PEAK 12(12P11.21) WILD-TYPE" 
                     TCGA-IB-A5SS                      TCGA-IB-A5ST 
"AMP PEAK 12(12P11.21) WILD-TYPE" "AMP PEAK 12(12P11.21) WILD-TYPE" 
[1] "hr=" "1.8"
D10V2, continuous
                                 vv
clus                              STAGE IA STAGE IB STAGE IIA STAGE IIB
  AMP PEAK 12(12P11.21) MUTATED          0        1         0         8
  AMP PEAK 12(12P11.21) WILD-TYPE        2        2         7        33
                                 vv
clus                              STAGE III STAGE IV
  AMP PEAK 12(12P11.21) MUTATED           0        1
  AMP PEAK 12(12P11.21) WILD-TYPE         2        1
D10V3, multiclass
                                 vv
clus                              T1+T2 T3+T4
  AMP PEAK 12(12P11.21) MUTATED       1     9
  AMP PEAK 12(12P11.21) WILD-TYPE     5    42
D10V4, multiclass
       clus
vv      AMP PEAK 12(12P11.21) MUTATED AMP PEAK 12(12P11.21) WILD-TYPE
  T1+T2                             1                               5
  T3+T4                             9                              42
D10V5, binary
                                 cls
clus                               0  1
  AMP PEAK 12(12P11.21) MUTATED    2  8
  AMP PEAK 12(12P11.21) WILD-TYPE 12 35
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 12(12P11.21) MUTATED      2    8
  AMP PEAK 12(12P11.21) WILD-TYPE   12   35
   clus
vv  AMP PEAK 12(12P11.21) MUTATED AMP PEAK 12(12P11.21) WILD-TYPE
  0                             2                              12
  1                             8                              35
                                 vv
clus                              M0 M1 MX
  AMP PEAK 12(12P11.21) MUTATED    4  1  5
  AMP PEAK 12(12P11.21) WILD-TYPE 28  1 18
D10V6, multiclass
    clus
vv   AMP PEAK 12(12P11.21) MUTATED AMP PEAK 12(12P11.21) WILD-TYPE
  M0                             4                              28
  M1                             1                               1
  MX                             5                              18
D10V7, binary
                                 cls
clus                               0  1
  AMP PEAK 12(12P11.21) MUTATED    2  8
  AMP PEAK 12(12P11.21) WILD-TYPE 29 18
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 12(12P11.21) MUTATED      2    8
  AMP PEAK 12(12P11.21) WILD-TYPE   29   18
        clus
vv       AMP PEAK 12(12P11.21) MUTATED AMP PEAK 12(12P11.21) WILD-TYPE
  FEMALE                             2                              29
  MALE                               8                              18
                                 vv
clus                              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  AMP PEAK 12(12P11.21) MUTATED                                     8
  AMP PEAK 12(12P11.21) WILD-TYPE                                  43
                                 vv
clus                              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  AMP PEAK 12(12P11.21) MUTATED                                       2
  AMP PEAK 12(12P11.21) WILD-TYPE                                     2
                                 vv
clus                              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  AMP PEAK 12(12P11.21) MUTATED                                                  0
  AMP PEAK 12(12P11.21) WILD-TYPE                                                1
D10V8, multiclass
                                                  clus
vv                                                 AMP PEAK 12(12P11.21) MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                          8
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                        2
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                             0
                                                  clus
vv                                                 AMP PEAK 12(12P11.21) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                           43
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                          2
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                               1
D10V9, continuous
[1] "Remove cluster labels:"        "AMP PEAK 12(12P11.21) MUTATED"
clus
  AMP PEAK 12(12P11.21) MUTATED AMP PEAK 12(12P11.21) WILD-TYPE 
                              2                              12 
                     TCGA-F2-6880                      TCGA-FB-A4P5 
"AMP PEAK 12(12P11.21) WILD-TYPE" "AMP PEAK 12(12P11.21) WILD-TYPE" 
                     TCGA-H6-8124                      TCGA-H6-A45N 
"AMP PEAK 12(12P11.21) WILD-TYPE" "AMP PEAK 12(12P11.21) WILD-TYPE" 
                     TCGA-IB-7644                      TCGA-IB-7649 
"AMP PEAK 12(12P11.21) WILD-TYPE" "AMP PEAK 12(12P11.21) WILD-TYPE" 
                     TCGA-IB-7651                      TCGA-IB-7885 
"AMP PEAK 12(12P11.21) WILD-TYPE" "AMP PEAK 12(12P11.21) WILD-TYPE" 
                     TCGA-IB-7887                      TCGA-IB-7891 
"AMP PEAK 12(12P11.21) WILD-TYPE" "AMP PEAK 12(12P11.21) WILD-TYPE" 
                     TCGA-IB-8126                      TCGA-IB-A5SS 
"AMP PEAK 12(12P11.21) WILD-TYPE" "AMP PEAK 12(12P11.21) WILD-TYPE" 
D10V10, continuous
[1] "Remove cluster labels:"        "AMP PEAK 12(12P11.21) MUTATED"
clus
  AMP PEAK 12(12P11.21) MUTATED AMP PEAK 12(12P11.21) WILD-TYPE 
                              2                               9 
                     TCGA-FB-A4P5                      TCGA-H6-8124 
"AMP PEAK 12(12P11.21) WILD-TYPE" "AMP PEAK 12(12P11.21) WILD-TYPE" 
                     TCGA-IB-7644                      TCGA-IB-7649 
"AMP PEAK 12(12P11.21) WILD-TYPE" "AMP PEAK 12(12P11.21) WILD-TYPE" 
                     TCGA-IB-7651                      TCGA-IB-7885 
"AMP PEAK 12(12P11.21) WILD-TYPE" "AMP PEAK 12(12P11.21) WILD-TYPE" 
                     TCGA-IB-7891                      TCGA-IB-8126 
"AMP PEAK 12(12P11.21) WILD-TYPE" "AMP PEAK 12(12P11.21) WILD-TYPE" 
                     TCGA-IB-A5SS 
"AMP PEAK 12(12P11.21) WILD-TYPE" 
                                 vv
clus                              R0 R1 RX
  AMP PEAK 12(12P11.21) MUTATED    2  7  1
  AMP PEAK 12(12P11.21) WILD-TYPE 30 14  1
D10V11, multiclass
    clus
vv   AMP PEAK 12(12P11.21) MUTATED AMP PEAK 12(12P11.21) WILD-TYPE
  R0                             2                              30
  R1                             7                              14
  RX                             1                               1
D10V12, continuous

Clustering(11) Variable = AMP PEAK 13(12Q15) MUTATION ANALYSIS
D11V1, survival
                              sevent
clus2                           0  1
  AMP PEAK 13(12Q15) MUTATED    3  3
  AMP PEAK 13(12Q15) WILD-TYPE 32 16
  AMP PEAK 13(12Q15) MUTATED AMP PEAK 13(12Q15) WILD-TYPE 
                           6                           48 
  AMP PEAK 13(12Q15) MUTATED AMP PEAK 13(12Q15) WILD-TYPE 
                           3                           16 
$`AMP PEAK 13(12Q15) MUTATED`
TCGA-H6-8124 TCGA-HZ-7289 TCGA-HZ-8005 TCGA-HZ-A4BK TCGA-IB-7646 TCGA-IB-A5SS 
       12.89         7.86         3.91         1.51         4.77        15.12 

$`AMP PEAK 13(12Q15) WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.96        11.84         7.07         5.03         5.19 
TCGA-FB-A4P5 TCGA-FB-A545 TCGA-H6-A45N TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 
        0.13         0.03         7.63         0.92         0.66         0.13 
TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 
        0.26        12.13        12.03         0.26         0.62         0.99 
TCGA-HZ-8003 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8636 TCGA-HZ-8638 
        0.69         0.92         0.49         0.10         0.16         2.96 
TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7647 
        0.76         1.02         5.98        11.41        49.38        21.86 
TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 
       15.35        19.82        15.65        27.98         4.04         3.58 
TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 
       43.79        15.78        19.66        16.04         3.85        15.95 
TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5ST 
        0.56        17.13        10.82         9.83         7.20         0.26 

  AMP PEAK 13(12Q15) MUTATED AMP PEAK 13(12Q15) WILD-TYPE 
                        1.51                         0.03 
  AMP PEAK 13(12Q15) MUTATED AMP PEAK 13(12Q15) WILD-TYPE 
                       15.12                        49.38 
  AMP PEAK 13(12Q15) MUTATED AMP PEAK 13(12Q15) WILD-TYPE 
                       6.315                        5.585 
[1] "1.5 - 15.1 (6.3)" "0.0 - 49.4 (5.6)"
                  TCGA-F2-6879                   TCGA-F2-6880 
"AMP PEAK 13(12Q15) WILD-TYPE" "AMP PEAK 13(12Q15) WILD-TYPE" 
                  TCGA-F2-7273                   TCGA-F2-7276 
"AMP PEAK 13(12Q15) WILD-TYPE" "AMP PEAK 13(12Q15) WILD-TYPE" 
                  TCGA-F2-A44G                   TCGA-F2-A44H 
"AMP PEAK 13(12Q15) WILD-TYPE" "AMP PEAK 13(12Q15) WILD-TYPE" 
                  TCGA-FB-A4P5                   TCGA-FB-A545 
"AMP PEAK 13(12Q15) WILD-TYPE" "AMP PEAK 13(12Q15) WILD-TYPE" 
                  TCGA-H6-8124                   TCGA-H6-A45N 
  "AMP PEAK 13(12Q15) MUTATED" "AMP PEAK 13(12Q15) WILD-TYPE" 
                  TCGA-HZ-7289                   TCGA-HZ-7918 
  "AMP PEAK 13(12Q15) MUTATED" "AMP PEAK 13(12Q15) WILD-TYPE" 
                  TCGA-HZ-7919                   TCGA-HZ-7922 
"AMP PEAK 13(12Q15) WILD-TYPE" "AMP PEAK 13(12Q15) WILD-TYPE" 
                  TCGA-HZ-7923                   TCGA-HZ-7924 
"AMP PEAK 13(12Q15) WILD-TYPE" "AMP PEAK 13(12Q15) WILD-TYPE" 
                  TCGA-HZ-7925                   TCGA-HZ-7926 
"AMP PEAK 13(12Q15) WILD-TYPE" "AMP PEAK 13(12Q15) WILD-TYPE" 
                  TCGA-HZ-8001                   TCGA-HZ-8002 
"AMP PEAK 13(12Q15) WILD-TYPE" "AMP PEAK 13(12Q15) WILD-TYPE" 
                  TCGA-HZ-8003                   TCGA-HZ-8005 
"AMP PEAK 13(12Q15) WILD-TYPE"   "AMP PEAK 13(12Q15) MUTATED" 
                  TCGA-HZ-8315                   TCGA-HZ-8317 
"AMP PEAK 13(12Q15) WILD-TYPE" "AMP PEAK 13(12Q15) WILD-TYPE" 
                  TCGA-HZ-8519                   TCGA-HZ-8636 
"AMP PEAK 13(12Q15) WILD-TYPE" "AMP PEAK 13(12Q15) WILD-TYPE" 
                  TCGA-HZ-8638                   TCGA-HZ-A49G 
"AMP PEAK 13(12Q15) WILD-TYPE" "AMP PEAK 13(12Q15) WILD-TYPE" 
                  TCGA-HZ-A49H                   TCGA-HZ-A4BH 
"AMP PEAK 13(12Q15) WILD-TYPE" "AMP PEAK 13(12Q15) WILD-TYPE" 
                  TCGA-HZ-A4BK                   TCGA-IB-7644 
  "AMP PEAK 13(12Q15) MUTATED" "AMP PEAK 13(12Q15) WILD-TYPE" 
                  TCGA-IB-7645                   TCGA-IB-7646 
"AMP PEAK 13(12Q15) WILD-TYPE"   "AMP PEAK 13(12Q15) MUTATED" 
                  TCGA-IB-7647                   TCGA-IB-7649 
"AMP PEAK 13(12Q15) WILD-TYPE" "AMP PEAK 13(12Q15) WILD-TYPE" 
                  TCGA-IB-7651                   TCGA-IB-7652 
"AMP PEAK 13(12Q15) WILD-TYPE" "AMP PEAK 13(12Q15) WILD-TYPE" 
                  TCGA-IB-7885                   TCGA-IB-7886 
"AMP PEAK 13(12Q15) WILD-TYPE" "AMP PEAK 13(12Q15) WILD-TYPE" 
                  TCGA-IB-7887                   TCGA-IB-7888 
"AMP PEAK 13(12Q15) WILD-TYPE" "AMP PEAK 13(12Q15) WILD-TYPE" 
                  TCGA-IB-7889                   TCGA-IB-7890 
"AMP PEAK 13(12Q15) WILD-TYPE" "AMP PEAK 13(12Q15) WILD-TYPE" 
                  TCGA-IB-7891                   TCGA-IB-7893 
"AMP PEAK 13(12Q15) WILD-TYPE" "AMP PEAK 13(12Q15) WILD-TYPE" 
                  TCGA-IB-7897                   TCGA-IB-8126 
"AMP PEAK 13(12Q15) WILD-TYPE" "AMP PEAK 13(12Q15) WILD-TYPE" 
                  TCGA-IB-8127                   TCGA-IB-A5SO 
"AMP PEAK 13(12Q15) WILD-TYPE" "AMP PEAK 13(12Q15) WILD-TYPE" 
                  TCGA-IB-A5SP                   TCGA-IB-A5SQ 
"AMP PEAK 13(12Q15) WILD-TYPE" "AMP PEAK 13(12Q15) WILD-TYPE" 
                  TCGA-IB-A5SS                   TCGA-IB-A5ST 
  "AMP PEAK 13(12Q15) MUTATED" "AMP PEAK 13(12Q15) WILD-TYPE" 
                  TCGA-F2-6879                   TCGA-F2-6880 
"AMP PEAK 13(12Q15) WILD-TYPE" "AMP PEAK 13(12Q15) WILD-TYPE" 
                  TCGA-F2-7273                   TCGA-F2-7276 
"AMP PEAK 13(12Q15) WILD-TYPE" "AMP PEAK 13(12Q15) WILD-TYPE" 
                  TCGA-F2-A44G                   TCGA-F2-A44H 
"AMP PEAK 13(12Q15) WILD-TYPE" "AMP PEAK 13(12Q15) WILD-TYPE" 
                  TCGA-FB-A4P5                   TCGA-FB-A545 
"AMP PEAK 13(12Q15) WILD-TYPE" "AMP PEAK 13(12Q15) WILD-TYPE" 
                  TCGA-H6-8124                   TCGA-H6-A45N 
  "AMP PEAK 13(12Q15) MUTATED" "AMP PEAK 13(12Q15) WILD-TYPE" 
                  TCGA-HZ-7289                   TCGA-HZ-7918 
  "AMP PEAK 13(12Q15) MUTATED" "AMP PEAK 13(12Q15) WILD-TYPE" 
                  TCGA-HZ-7919                   TCGA-HZ-7922 
"AMP PEAK 13(12Q15) WILD-TYPE" "AMP PEAK 13(12Q15) WILD-TYPE" 
                  TCGA-HZ-7923                   TCGA-HZ-7924 
"AMP PEAK 13(12Q15) WILD-TYPE" "AMP PEAK 13(12Q15) WILD-TYPE" 
                  TCGA-HZ-7925                   TCGA-HZ-7926 
"AMP PEAK 13(12Q15) WILD-TYPE" "AMP PEAK 13(12Q15) WILD-TYPE" 
                  TCGA-HZ-8001                   TCGA-HZ-8002 
"AMP PEAK 13(12Q15) WILD-TYPE" "AMP PEAK 13(12Q15) WILD-TYPE" 
                  TCGA-HZ-8003                   TCGA-HZ-8005 
"AMP PEAK 13(12Q15) WILD-TYPE"   "AMP PEAK 13(12Q15) MUTATED" 
                  TCGA-HZ-8315                   TCGA-HZ-8317 
"AMP PEAK 13(12Q15) WILD-TYPE" "AMP PEAK 13(12Q15) WILD-TYPE" 
                  TCGA-HZ-8519                   TCGA-HZ-8636 
"AMP PEAK 13(12Q15) WILD-TYPE" "AMP PEAK 13(12Q15) WILD-TYPE" 
                  TCGA-HZ-8638                   TCGA-HZ-A49G 
"AMP PEAK 13(12Q15) WILD-TYPE" "AMP PEAK 13(12Q15) WILD-TYPE" 
                  TCGA-HZ-A49H                   TCGA-HZ-A4BH 
"AMP PEAK 13(12Q15) WILD-TYPE" "AMP PEAK 13(12Q15) WILD-TYPE" 
                  TCGA-HZ-A4BK                   TCGA-IB-7644 
  "AMP PEAK 13(12Q15) MUTATED" "AMP PEAK 13(12Q15) WILD-TYPE" 
                  TCGA-IB-7645                   TCGA-IB-7646 
"AMP PEAK 13(12Q15) WILD-TYPE"   "AMP PEAK 13(12Q15) MUTATED" 
                  TCGA-IB-7647                   TCGA-IB-7649 
"AMP PEAK 13(12Q15) WILD-TYPE" "AMP PEAK 13(12Q15) WILD-TYPE" 
                  TCGA-IB-7651                   TCGA-IB-7652 
"AMP PEAK 13(12Q15) WILD-TYPE" "AMP PEAK 13(12Q15) WILD-TYPE" 
                  TCGA-IB-7885                   TCGA-IB-7886 
"AMP PEAK 13(12Q15) WILD-TYPE" "AMP PEAK 13(12Q15) WILD-TYPE" 
                  TCGA-IB-7887                   TCGA-IB-7888 
"AMP PEAK 13(12Q15) WILD-TYPE" "AMP PEAK 13(12Q15) WILD-TYPE" 
                  TCGA-IB-7889                   TCGA-IB-7890 
"AMP PEAK 13(12Q15) WILD-TYPE" "AMP PEAK 13(12Q15) WILD-TYPE" 
                  TCGA-IB-7891                   TCGA-IB-7893 
"AMP PEAK 13(12Q15) WILD-TYPE" "AMP PEAK 13(12Q15) WILD-TYPE" 
                  TCGA-IB-7897                   TCGA-IB-8126 
"AMP PEAK 13(12Q15) WILD-TYPE" "AMP PEAK 13(12Q15) WILD-TYPE" 
                  TCGA-IB-8127                   TCGA-IB-A5SO 
"AMP PEAK 13(12Q15) WILD-TYPE" "AMP PEAK 13(12Q15) WILD-TYPE" 
                  TCGA-IB-A5SP                   TCGA-IB-A5SQ 
"AMP PEAK 13(12Q15) WILD-TYPE" "AMP PEAK 13(12Q15) WILD-TYPE" 
                  TCGA-IB-A5SS                   TCGA-IB-A5ST 
  "AMP PEAK 13(12Q15) MUTATED" "AMP PEAK 13(12Q15) WILD-TYPE" 
                  TCGA-F2-6879                   TCGA-F2-6880 
"AMP PEAK 13(12Q15) WILD-TYPE" "AMP PEAK 13(12Q15) WILD-TYPE" 
                  TCGA-F2-7273                   TCGA-F2-7276 
"AMP PEAK 13(12Q15) WILD-TYPE" "AMP PEAK 13(12Q15) WILD-TYPE" 
                  TCGA-F2-A44G                   TCGA-F2-A44H 
"AMP PEAK 13(12Q15) WILD-TYPE" "AMP PEAK 13(12Q15) WILD-TYPE" 
                  TCGA-FB-A4P5                   TCGA-FB-A545 
"AMP PEAK 13(12Q15) WILD-TYPE" "AMP PEAK 13(12Q15) WILD-TYPE" 
                  TCGA-H6-8124                   TCGA-H6-A45N 
  "AMP PEAK 13(12Q15) MUTATED" "AMP PEAK 13(12Q15) WILD-TYPE" 
                  TCGA-HZ-7289                   TCGA-HZ-7918 
  "AMP PEAK 13(12Q15) MUTATED" "AMP PEAK 13(12Q15) WILD-TYPE" 
                  TCGA-HZ-7919                   TCGA-HZ-7922 
"AMP PEAK 13(12Q15) WILD-TYPE" "AMP PEAK 13(12Q15) WILD-TYPE" 
                  TCGA-HZ-7923                   TCGA-HZ-7924 
"AMP PEAK 13(12Q15) WILD-TYPE" "AMP PEAK 13(12Q15) WILD-TYPE" 
                  TCGA-HZ-7925                   TCGA-HZ-7926 
"AMP PEAK 13(12Q15) WILD-TYPE" "AMP PEAK 13(12Q15) WILD-TYPE" 
                  TCGA-HZ-8001                   TCGA-HZ-8002 
"AMP PEAK 13(12Q15) WILD-TYPE" "AMP PEAK 13(12Q15) WILD-TYPE" 
                  TCGA-HZ-8003                   TCGA-HZ-8005 
"AMP PEAK 13(12Q15) WILD-TYPE"   "AMP PEAK 13(12Q15) MUTATED" 
                  TCGA-HZ-8315                   TCGA-HZ-8317 
"AMP PEAK 13(12Q15) WILD-TYPE" "AMP PEAK 13(12Q15) WILD-TYPE" 
                  TCGA-HZ-8519                   TCGA-HZ-8636 
"AMP PEAK 13(12Q15) WILD-TYPE" "AMP PEAK 13(12Q15) WILD-TYPE" 
                  TCGA-HZ-8638                   TCGA-HZ-A49G 
"AMP PEAK 13(12Q15) WILD-TYPE" "AMP PEAK 13(12Q15) WILD-TYPE" 
                  TCGA-HZ-A49H                   TCGA-HZ-A4BH 
"AMP PEAK 13(12Q15) WILD-TYPE" "AMP PEAK 13(12Q15) WILD-TYPE" 
                  TCGA-HZ-A4BK                   TCGA-IB-7644 
  "AMP PEAK 13(12Q15) MUTATED" "AMP PEAK 13(12Q15) WILD-TYPE" 
                  TCGA-IB-7645                   TCGA-IB-7646 
"AMP PEAK 13(12Q15) WILD-TYPE"   "AMP PEAK 13(12Q15) MUTATED" 
                  TCGA-IB-7647                   TCGA-IB-7649 
"AMP PEAK 13(12Q15) WILD-TYPE" "AMP PEAK 13(12Q15) WILD-TYPE" 
                  TCGA-IB-7651                   TCGA-IB-7652 
"AMP PEAK 13(12Q15) WILD-TYPE" "AMP PEAK 13(12Q15) WILD-TYPE" 
                  TCGA-IB-7885                   TCGA-IB-7886 
"AMP PEAK 13(12Q15) WILD-TYPE" "AMP PEAK 13(12Q15) WILD-TYPE" 
                  TCGA-IB-7887                   TCGA-IB-7888 
"AMP PEAK 13(12Q15) WILD-TYPE" "AMP PEAK 13(12Q15) WILD-TYPE" 
                  TCGA-IB-7889                   TCGA-IB-7890 
"AMP PEAK 13(12Q15) WILD-TYPE" "AMP PEAK 13(12Q15) WILD-TYPE" 
                  TCGA-IB-7891                   TCGA-IB-7893 
"AMP PEAK 13(12Q15) WILD-TYPE" "AMP PEAK 13(12Q15) WILD-TYPE" 
                  TCGA-IB-7897                   TCGA-IB-8126 
"AMP PEAK 13(12Q15) WILD-TYPE" "AMP PEAK 13(12Q15) WILD-TYPE" 
                  TCGA-IB-8127                   TCGA-IB-A5SO 
"AMP PEAK 13(12Q15) WILD-TYPE" "AMP PEAK 13(12Q15) WILD-TYPE" 
                  TCGA-IB-A5SP                   TCGA-IB-A5SQ 
"AMP PEAK 13(12Q15) WILD-TYPE" "AMP PEAK 13(12Q15) WILD-TYPE" 
                  TCGA-IB-A5SS                   TCGA-IB-A5ST 
  "AMP PEAK 13(12Q15) MUTATED" "AMP PEAK 13(12Q15) WILD-TYPE" 
[1] "hr=" "2.6"
D11V2, continuous
                              vv
clus                           STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III
  AMP PEAK 13(12Q15) MUTATED          0        0         0         7         0
  AMP PEAK 13(12Q15) WILD-TYPE        2        3         7        34         2
                              vv
clus                           STAGE IV
  AMP PEAK 13(12Q15) MUTATED          0
  AMP PEAK 13(12Q15) WILD-TYPE        2
D11V3, multiclass
                              vv
clus                           T1+T2 T3+T4
  AMP PEAK 13(12Q15) MUTATED       0     7
  AMP PEAK 13(12Q15) WILD-TYPE     6    44
D11V4, multiclass
       clus
vv      AMP PEAK 13(12Q15) MUTATED AMP PEAK 13(12Q15) WILD-TYPE
  T1+T2                          0                            6
  T3+T4                          7                           44
D11V5, binary
                              cls
clus                            0  1
  AMP PEAK 13(12Q15) MUTATED    0  7
  AMP PEAK 13(12Q15) WILD-TYPE 14 36
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 13(12Q15) MUTATED      0    7
  AMP PEAK 13(12Q15) WILD-TYPE   14   36
   clus
vv  AMP PEAK 13(12Q15) MUTATED AMP PEAK 13(12Q15) WILD-TYPE
  0                          0                           14
  1                          7                           36
                              vv
clus                           M0 M1 MX
  AMP PEAK 13(12Q15) MUTATED    3  0  4
  AMP PEAK 13(12Q15) WILD-TYPE 29  2 19
D11V6, multiclass
    clus
vv   AMP PEAK 13(12Q15) MUTATED AMP PEAK 13(12Q15) WILD-TYPE
  M0                          3                           29
  M1                          0                            2
  MX                          4                           19
D11V7, binary
                              cls
clus                            0  1
  AMP PEAK 13(12Q15) MUTATED    2  5
  AMP PEAK 13(12Q15) WILD-TYPE 29 21
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 13(12Q15) MUTATED      2    5
  AMP PEAK 13(12Q15) WILD-TYPE   29   21
        clus
vv       AMP PEAK 13(12Q15) MUTATED AMP PEAK 13(12Q15) WILD-TYPE
  FEMALE                          2                           29
  MALE                            5                           21
                              vv
clus                           PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  AMP PEAK 13(12Q15) MUTATED                                     5
  AMP PEAK 13(12Q15) WILD-TYPE                                  46
                              vv
clus                           PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  AMP PEAK 13(12Q15) MUTATED                                       2
  AMP PEAK 13(12Q15) WILD-TYPE                                     2
                              vv
clus                           PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  AMP PEAK 13(12Q15) MUTATED                                                  0
  AMP PEAK 13(12Q15) WILD-TYPE                                                1
D11V8, multiclass
                                                  clus
vv                                                 AMP PEAK 13(12Q15) MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                       5
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                     2
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                          0
                                                  clus
vv                                                 AMP PEAK 13(12Q15) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                        46
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                       2
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                            1
D11V9, continuous
[1] "Remove cluster labels:"     "AMP PEAK 13(12Q15) MUTATED"
clus
  AMP PEAK 13(12Q15) MUTATED AMP PEAK 13(12Q15) WILD-TYPE 
                           2                           12 
                  TCGA-F2-6880                   TCGA-FB-A4P5 
"AMP PEAK 13(12Q15) WILD-TYPE" "AMP PEAK 13(12Q15) WILD-TYPE" 
                  TCGA-H6-A45N                   TCGA-IB-7644 
"AMP PEAK 13(12Q15) WILD-TYPE" "AMP PEAK 13(12Q15) WILD-TYPE" 
                  TCGA-IB-7649                   TCGA-IB-7651 
"AMP PEAK 13(12Q15) WILD-TYPE" "AMP PEAK 13(12Q15) WILD-TYPE" 
                  TCGA-IB-7885                   TCGA-IB-7886 
"AMP PEAK 13(12Q15) WILD-TYPE" "AMP PEAK 13(12Q15) WILD-TYPE" 
                  TCGA-IB-7887                   TCGA-IB-7891 
"AMP PEAK 13(12Q15) WILD-TYPE" "AMP PEAK 13(12Q15) WILD-TYPE" 
                  TCGA-IB-8126                   TCGA-IB-8127 
"AMP PEAK 13(12Q15) WILD-TYPE" "AMP PEAK 13(12Q15) WILD-TYPE" 
D11V10, continuous
[1] "Remove cluster labels:"     "AMP PEAK 13(12Q15) MUTATED"
clus
  AMP PEAK 13(12Q15) MUTATED AMP PEAK 13(12Q15) WILD-TYPE 
                           2                            9 
                  TCGA-FB-A4P5                   TCGA-IB-7644 
"AMP PEAK 13(12Q15) WILD-TYPE" "AMP PEAK 13(12Q15) WILD-TYPE" 
                  TCGA-IB-7649                   TCGA-IB-7651 
"AMP PEAK 13(12Q15) WILD-TYPE" "AMP PEAK 13(12Q15) WILD-TYPE" 
                  TCGA-IB-7885                   TCGA-IB-7886 
"AMP PEAK 13(12Q15) WILD-TYPE" "AMP PEAK 13(12Q15) WILD-TYPE" 
                  TCGA-IB-7891                   TCGA-IB-8126 
"AMP PEAK 13(12Q15) WILD-TYPE" "AMP PEAK 13(12Q15) WILD-TYPE" 
                  TCGA-IB-8127 
"AMP PEAK 13(12Q15) WILD-TYPE" 
                              vv
clus                           R0 R1 RX
  AMP PEAK 13(12Q15) MUTATED    2  4  1
  AMP PEAK 13(12Q15) WILD-TYPE 30 17  1
D11V11, multiclass
    clus
vv   AMP PEAK 13(12Q15) MUTATED AMP PEAK 13(12Q15) WILD-TYPE
  R0                          2                           30
  R1                          4                           17
  RX                          1                            1
D11V12, continuous

Clustering(12) Variable = AMP PEAK 14(17P11.2) MUTATION ANALYSIS
D12V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 14(17P11.2) MUTATED    1  1
  AMP PEAK 14(17P11.2) WILD-TYPE 34 18
  AMP PEAK 14(17P11.2) MUTATED AMP PEAK 14(17P11.2) WILD-TYPE 
                             2                             52 
  AMP PEAK 14(17P11.2) MUTATED AMP PEAK 14(17P11.2) WILD-TYPE 
                             1                             18 
$`AMP PEAK 14(17P11.2) MUTATED`
TCGA-FB-A545 TCGA-IB-7889 
        0.03        15.78 

$`AMP PEAK 14(17P11.2) WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.96        11.84         7.07         5.03         5.19 
TCGA-FB-A4P5 TCGA-H6-8124 TCGA-H6-A45N TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 
        0.13        12.89         7.63         7.86         0.92         0.66 
TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 
        0.13         0.26        12.13        12.03         0.26         0.62 
TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8519 
        0.99         0.69         3.91         0.92         0.49         0.10 
TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK 
        0.16         2.96         0.76         1.02         5.98         1.51 
TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 
       11.41        49.38         4.77        21.86        15.35        19.82 
TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7890 
       15.65        27.98         4.04         3.58        43.79        19.66 
TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO 
       16.04         3.85        15.95         0.56        17.13        10.82 
TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST 
        9.83         7.20        15.12         0.26 

  AMP PEAK 14(17P11.2) MUTATED AMP PEAK 14(17P11.2) WILD-TYPE 
                          0.03                           0.10 
  AMP PEAK 14(17P11.2) MUTATED AMP PEAK 14(17P11.2) WILD-TYPE 
                         15.78                          49.38 
  AMP PEAK 14(17P11.2) MUTATED AMP PEAK 14(17P11.2) WILD-TYPE 
                         7.905                          5.585 
[1] "0.0 - 15.8 (7.9)" "0.1 - 49.4 (5.6)"
                    TCGA-F2-6879                     TCGA-F2-6880 
"AMP PEAK 14(17P11.2) WILD-TYPE" "AMP PEAK 14(17P11.2) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"AMP PEAK 14(17P11.2) WILD-TYPE" "AMP PEAK 14(17P11.2) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
"AMP PEAK 14(17P11.2) WILD-TYPE" "AMP PEAK 14(17P11.2) WILD-TYPE" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"AMP PEAK 14(17P11.2) WILD-TYPE"   "AMP PEAK 14(17P11.2) MUTATED" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
"AMP PEAK 14(17P11.2) WILD-TYPE" "AMP PEAK 14(17P11.2) WILD-TYPE" 
                    TCGA-HZ-7289                     TCGA-HZ-7918 
"AMP PEAK 14(17P11.2) WILD-TYPE" "AMP PEAK 14(17P11.2) WILD-TYPE" 
                    TCGA-HZ-7919                     TCGA-HZ-7922 
"AMP PEAK 14(17P11.2) WILD-TYPE" "AMP PEAK 14(17P11.2) WILD-TYPE" 
                    TCGA-HZ-7923                     TCGA-HZ-7924 
"AMP PEAK 14(17P11.2) WILD-TYPE" "AMP PEAK 14(17P11.2) WILD-TYPE" 
                    TCGA-HZ-7925                     TCGA-HZ-7926 
"AMP PEAK 14(17P11.2) WILD-TYPE" "AMP PEAK 14(17P11.2) WILD-TYPE" 
                    TCGA-HZ-8001                     TCGA-HZ-8002 
"AMP PEAK 14(17P11.2) WILD-TYPE" "AMP PEAK 14(17P11.2) WILD-TYPE" 
                    TCGA-HZ-8003                     TCGA-HZ-8005 
"AMP PEAK 14(17P11.2) WILD-TYPE" "AMP PEAK 14(17P11.2) WILD-TYPE" 
                    TCGA-HZ-8315                     TCGA-HZ-8317 
"AMP PEAK 14(17P11.2) WILD-TYPE" "AMP PEAK 14(17P11.2) WILD-TYPE" 
                    TCGA-HZ-8519                     TCGA-HZ-8636 
"AMP PEAK 14(17P11.2) WILD-TYPE" "AMP PEAK 14(17P11.2) WILD-TYPE" 
                    TCGA-HZ-8638                     TCGA-HZ-A49G 
"AMP PEAK 14(17P11.2) WILD-TYPE" "AMP PEAK 14(17P11.2) WILD-TYPE" 
                    TCGA-HZ-A49H                     TCGA-HZ-A4BH 
"AMP PEAK 14(17P11.2) WILD-TYPE" "AMP PEAK 14(17P11.2) WILD-TYPE" 
                    TCGA-HZ-A4BK                     TCGA-IB-7644 
"AMP PEAK 14(17P11.2) WILD-TYPE" "AMP PEAK 14(17P11.2) WILD-TYPE" 
                    TCGA-IB-7645                     TCGA-IB-7646 
"AMP PEAK 14(17P11.2) WILD-TYPE" "AMP PEAK 14(17P11.2) WILD-TYPE" 
                    TCGA-IB-7647                     TCGA-IB-7649 
"AMP PEAK 14(17P11.2) WILD-TYPE" "AMP PEAK 14(17P11.2) WILD-TYPE" 
                    TCGA-IB-7651                     TCGA-IB-7652 
"AMP PEAK 14(17P11.2) WILD-TYPE" "AMP PEAK 14(17P11.2) WILD-TYPE" 
                    TCGA-IB-7885                     TCGA-IB-7886 
"AMP PEAK 14(17P11.2) WILD-TYPE" "AMP PEAK 14(17P11.2) WILD-TYPE" 
                    TCGA-IB-7887                     TCGA-IB-7888 
"AMP PEAK 14(17P11.2) WILD-TYPE" "AMP PEAK 14(17P11.2) WILD-TYPE" 
                    TCGA-IB-7889                     TCGA-IB-7890 
  "AMP PEAK 14(17P11.2) MUTATED" "AMP PEAK 14(17P11.2) WILD-TYPE" 
                    TCGA-IB-7891                     TCGA-IB-7893 
"AMP PEAK 14(17P11.2) WILD-TYPE" "AMP PEAK 14(17P11.2) WILD-TYPE" 
                    TCGA-IB-7897                     TCGA-IB-8126 
"AMP PEAK 14(17P11.2) WILD-TYPE" "AMP PEAK 14(17P11.2) WILD-TYPE" 
                    TCGA-IB-8127                     TCGA-IB-A5SO 
"AMP PEAK 14(17P11.2) WILD-TYPE" "AMP PEAK 14(17P11.2) WILD-TYPE" 
                    TCGA-IB-A5SP                     TCGA-IB-A5SQ 
"AMP PEAK 14(17P11.2) WILD-TYPE" "AMP PEAK 14(17P11.2) WILD-TYPE" 
                    TCGA-IB-A5SS                     TCGA-IB-A5ST 
"AMP PEAK 14(17P11.2) WILD-TYPE" "AMP PEAK 14(17P11.2) WILD-TYPE" 
                    TCGA-F2-6879                     TCGA-F2-6880 
"AMP PEAK 14(17P11.2) WILD-TYPE" "AMP PEAK 14(17P11.2) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"AMP PEAK 14(17P11.2) WILD-TYPE" "AMP PEAK 14(17P11.2) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
"AMP PEAK 14(17P11.2) WILD-TYPE" "AMP PEAK 14(17P11.2) WILD-TYPE" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"AMP PEAK 14(17P11.2) WILD-TYPE"   "AMP PEAK 14(17P11.2) MUTATED" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
"AMP PEAK 14(17P11.2) WILD-TYPE" "AMP PEAK 14(17P11.2) WILD-TYPE" 
                    TCGA-HZ-7289                     TCGA-HZ-7918 
"AMP PEAK 14(17P11.2) WILD-TYPE" "AMP PEAK 14(17P11.2) WILD-TYPE" 
                    TCGA-HZ-7919                     TCGA-HZ-7922 
"AMP PEAK 14(17P11.2) WILD-TYPE" "AMP PEAK 14(17P11.2) WILD-TYPE" 
                    TCGA-HZ-7923                     TCGA-HZ-7924 
"AMP PEAK 14(17P11.2) WILD-TYPE" "AMP PEAK 14(17P11.2) WILD-TYPE" 
                    TCGA-HZ-7925                     TCGA-HZ-7926 
"AMP PEAK 14(17P11.2) WILD-TYPE" "AMP PEAK 14(17P11.2) WILD-TYPE" 
                    TCGA-HZ-8001                     TCGA-HZ-8002 
"AMP PEAK 14(17P11.2) WILD-TYPE" "AMP PEAK 14(17P11.2) WILD-TYPE" 
                    TCGA-HZ-8003                     TCGA-HZ-8005 
"AMP PEAK 14(17P11.2) WILD-TYPE" "AMP PEAK 14(17P11.2) WILD-TYPE" 
                    TCGA-HZ-8315                     TCGA-HZ-8317 
"AMP PEAK 14(17P11.2) WILD-TYPE" "AMP PEAK 14(17P11.2) WILD-TYPE" 
                    TCGA-HZ-8519                     TCGA-HZ-8636 
"AMP PEAK 14(17P11.2) WILD-TYPE" "AMP PEAK 14(17P11.2) WILD-TYPE" 
                    TCGA-HZ-8638                     TCGA-HZ-A49G 
"AMP PEAK 14(17P11.2) WILD-TYPE" "AMP PEAK 14(17P11.2) WILD-TYPE" 
                    TCGA-HZ-A49H                     TCGA-HZ-A4BH 
"AMP PEAK 14(17P11.2) WILD-TYPE" "AMP PEAK 14(17P11.2) WILD-TYPE" 
                    TCGA-HZ-A4BK                     TCGA-IB-7644 
"AMP PEAK 14(17P11.2) WILD-TYPE" "AMP PEAK 14(17P11.2) WILD-TYPE" 
                    TCGA-IB-7645                     TCGA-IB-7646 
"AMP PEAK 14(17P11.2) WILD-TYPE" "AMP PEAK 14(17P11.2) WILD-TYPE" 
                    TCGA-IB-7647                     TCGA-IB-7649 
"AMP PEAK 14(17P11.2) WILD-TYPE" "AMP PEAK 14(17P11.2) WILD-TYPE" 
                    TCGA-IB-7651                     TCGA-IB-7652 
"AMP PEAK 14(17P11.2) WILD-TYPE" "AMP PEAK 14(17P11.2) WILD-TYPE" 
                    TCGA-IB-7885                     TCGA-IB-7886 
"AMP PEAK 14(17P11.2) WILD-TYPE" "AMP PEAK 14(17P11.2) WILD-TYPE" 
                    TCGA-IB-7887                     TCGA-IB-7888 
"AMP PEAK 14(17P11.2) WILD-TYPE" "AMP PEAK 14(17P11.2) WILD-TYPE" 
                    TCGA-IB-7889                     TCGA-IB-7890 
  "AMP PEAK 14(17P11.2) MUTATED" "AMP PEAK 14(17P11.2) WILD-TYPE" 
                    TCGA-IB-7891                     TCGA-IB-7893 
"AMP PEAK 14(17P11.2) WILD-TYPE" "AMP PEAK 14(17P11.2) WILD-TYPE" 
                    TCGA-IB-7897                     TCGA-IB-8126 
"AMP PEAK 14(17P11.2) WILD-TYPE" "AMP PEAK 14(17P11.2) WILD-TYPE" 
                    TCGA-IB-8127                     TCGA-IB-A5SO 
"AMP PEAK 14(17P11.2) WILD-TYPE" "AMP PEAK 14(17P11.2) WILD-TYPE" 
                    TCGA-IB-A5SP                     TCGA-IB-A5SQ 
"AMP PEAK 14(17P11.2) WILD-TYPE" "AMP PEAK 14(17P11.2) WILD-TYPE" 
                    TCGA-IB-A5SS                     TCGA-IB-A5ST 
"AMP PEAK 14(17P11.2) WILD-TYPE" "AMP PEAK 14(17P11.2) WILD-TYPE" 
                    TCGA-F2-6879                     TCGA-F2-6880 
"AMP PEAK 14(17P11.2) WILD-TYPE" "AMP PEAK 14(17P11.2) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"AMP PEAK 14(17P11.2) WILD-TYPE" "AMP PEAK 14(17P11.2) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
"AMP PEAK 14(17P11.2) WILD-TYPE" "AMP PEAK 14(17P11.2) WILD-TYPE" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"AMP PEAK 14(17P11.2) WILD-TYPE"   "AMP PEAK 14(17P11.2) MUTATED" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
"AMP PEAK 14(17P11.2) WILD-TYPE" "AMP PEAK 14(17P11.2) WILD-TYPE" 
                    TCGA-HZ-7289                     TCGA-HZ-7918 
"AMP PEAK 14(17P11.2) WILD-TYPE" "AMP PEAK 14(17P11.2) WILD-TYPE" 
                    TCGA-HZ-7919                     TCGA-HZ-7922 
"AMP PEAK 14(17P11.2) WILD-TYPE" "AMP PEAK 14(17P11.2) WILD-TYPE" 
                    TCGA-HZ-7923                     TCGA-HZ-7924 
"AMP PEAK 14(17P11.2) WILD-TYPE" "AMP PEAK 14(17P11.2) WILD-TYPE" 
                    TCGA-HZ-7925                     TCGA-HZ-7926 
"AMP PEAK 14(17P11.2) WILD-TYPE" "AMP PEAK 14(17P11.2) WILD-TYPE" 
                    TCGA-HZ-8001                     TCGA-HZ-8002 
"AMP PEAK 14(17P11.2) WILD-TYPE" "AMP PEAK 14(17P11.2) WILD-TYPE" 
                    TCGA-HZ-8003                     TCGA-HZ-8005 
"AMP PEAK 14(17P11.2) WILD-TYPE" "AMP PEAK 14(17P11.2) WILD-TYPE" 
                    TCGA-HZ-8315                     TCGA-HZ-8317 
"AMP PEAK 14(17P11.2) WILD-TYPE" "AMP PEAK 14(17P11.2) WILD-TYPE" 
                    TCGA-HZ-8519                     TCGA-HZ-8636 
"AMP PEAK 14(17P11.2) WILD-TYPE" "AMP PEAK 14(17P11.2) WILD-TYPE" 
                    TCGA-HZ-8638                     TCGA-HZ-A49G 
"AMP PEAK 14(17P11.2) WILD-TYPE" "AMP PEAK 14(17P11.2) WILD-TYPE" 
                    TCGA-HZ-A49H                     TCGA-HZ-A4BH 
"AMP PEAK 14(17P11.2) WILD-TYPE" "AMP PEAK 14(17P11.2) WILD-TYPE" 
                    TCGA-HZ-A4BK                     TCGA-IB-7644 
"AMP PEAK 14(17P11.2) WILD-TYPE" "AMP PEAK 14(17P11.2) WILD-TYPE" 
                    TCGA-IB-7645                     TCGA-IB-7646 
"AMP PEAK 14(17P11.2) WILD-TYPE" "AMP PEAK 14(17P11.2) WILD-TYPE" 
                    TCGA-IB-7647                     TCGA-IB-7649 
"AMP PEAK 14(17P11.2) WILD-TYPE" "AMP PEAK 14(17P11.2) WILD-TYPE" 
                    TCGA-IB-7651                     TCGA-IB-7652 
"AMP PEAK 14(17P11.2) WILD-TYPE" "AMP PEAK 14(17P11.2) WILD-TYPE" 
                    TCGA-IB-7885                     TCGA-IB-7886 
"AMP PEAK 14(17P11.2) WILD-TYPE" "AMP PEAK 14(17P11.2) WILD-TYPE" 
                    TCGA-IB-7887                     TCGA-IB-7888 
"AMP PEAK 14(17P11.2) WILD-TYPE" "AMP PEAK 14(17P11.2) WILD-TYPE" 
                    TCGA-IB-7889                     TCGA-IB-7890 
  "AMP PEAK 14(17P11.2) MUTATED" "AMP PEAK 14(17P11.2) WILD-TYPE" 
                    TCGA-IB-7891                     TCGA-IB-7893 
"AMP PEAK 14(17P11.2) WILD-TYPE" "AMP PEAK 14(17P11.2) WILD-TYPE" 
                    TCGA-IB-7897                     TCGA-IB-8126 
"AMP PEAK 14(17P11.2) WILD-TYPE" "AMP PEAK 14(17P11.2) WILD-TYPE" 
                    TCGA-IB-8127                     TCGA-IB-A5SO 
"AMP PEAK 14(17P11.2) WILD-TYPE" "AMP PEAK 14(17P11.2) WILD-TYPE" 
                    TCGA-IB-A5SP                     TCGA-IB-A5SQ 
"AMP PEAK 14(17P11.2) WILD-TYPE" "AMP PEAK 14(17P11.2) WILD-TYPE" 
                    TCGA-IB-A5SS                     TCGA-IB-A5ST 
"AMP PEAK 14(17P11.2) WILD-TYPE" "AMP PEAK 14(17P11.2) WILD-TYPE" 
[1] "Remove cluster labels:"       "AMP PEAK 14(17P11.2) MUTATED"
clus
  AMP PEAK 14(17P11.2) MUTATED AMP PEAK 14(17P11.2) WILD-TYPE 
                             2                             52 
                    TCGA-F2-6879                     TCGA-F2-6880 
"AMP PEAK 14(17P11.2) WILD-TYPE" "AMP PEAK 14(17P11.2) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"AMP PEAK 14(17P11.2) WILD-TYPE" "AMP PEAK 14(17P11.2) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
"AMP PEAK 14(17P11.2) WILD-TYPE" "AMP PEAK 14(17P11.2) WILD-TYPE" 
                    TCGA-FB-A4P5                     TCGA-H6-8124 
"AMP PEAK 14(17P11.2) WILD-TYPE" "AMP PEAK 14(17P11.2) WILD-TYPE" 
                    TCGA-H6-A45N                     TCGA-HZ-7289 
"AMP PEAK 14(17P11.2) WILD-TYPE" "AMP PEAK 14(17P11.2) WILD-TYPE" 
                    TCGA-HZ-7918                     TCGA-HZ-7919 
"AMP PEAK 14(17P11.2) WILD-TYPE" "AMP PEAK 14(17P11.2) WILD-TYPE" 
                    TCGA-HZ-7922                     TCGA-HZ-7923 
"AMP PEAK 14(17P11.2) WILD-TYPE" "AMP PEAK 14(17P11.2) WILD-TYPE" 
                    TCGA-HZ-7924                     TCGA-HZ-7925 
"AMP PEAK 14(17P11.2) WILD-TYPE" "AMP PEAK 14(17P11.2) WILD-TYPE" 
                    TCGA-HZ-7926                     TCGA-HZ-8001 
"AMP PEAK 14(17P11.2) WILD-TYPE" "AMP PEAK 14(17P11.2) WILD-TYPE" 
                    TCGA-HZ-8002                     TCGA-HZ-8003 
"AMP PEAK 14(17P11.2) WILD-TYPE" "AMP PEAK 14(17P11.2) WILD-TYPE" 
                    TCGA-HZ-8005                     TCGA-HZ-8315 
"AMP PEAK 14(17P11.2) WILD-TYPE" "AMP PEAK 14(17P11.2) WILD-TYPE" 
                    TCGA-HZ-8317                     TCGA-HZ-8519 
"AMP PEAK 14(17P11.2) WILD-TYPE" "AMP PEAK 14(17P11.2) WILD-TYPE" 
                    TCGA-HZ-8636                     TCGA-HZ-8638 
"AMP PEAK 14(17P11.2) WILD-TYPE" "AMP PEAK 14(17P11.2) WILD-TYPE" 
                    TCGA-HZ-A49G                     TCGA-HZ-A49H 
"AMP PEAK 14(17P11.2) WILD-TYPE" "AMP PEAK 14(17P11.2) WILD-TYPE" 
                    TCGA-HZ-A4BH                     TCGA-HZ-A4BK 
"AMP PEAK 14(17P11.2) WILD-TYPE" "AMP PEAK 14(17P11.2) WILD-TYPE" 
                    TCGA-IB-7644                     TCGA-IB-7645 
"AMP PEAK 14(17P11.2) WILD-TYPE" "AMP PEAK 14(17P11.2) WILD-TYPE" 
                    TCGA-IB-7646                     TCGA-IB-7647 
"AMP PEAK 14(17P11.2) WILD-TYPE" "AMP PEAK 14(17P11.2) WILD-TYPE" 
                    TCGA-IB-7649                     TCGA-IB-7651 
"AMP PEAK 14(17P11.2) WILD-TYPE" "AMP PEAK 14(17P11.2) WILD-TYPE" 
                    TCGA-IB-7652                     TCGA-IB-7885 
"AMP PEAK 14(17P11.2) WILD-TYPE" "AMP PEAK 14(17P11.2) WILD-TYPE" 
                    TCGA-IB-7886                     TCGA-IB-7887 
"AMP PEAK 14(17P11.2) WILD-TYPE" "AMP PEAK 14(17P11.2) WILD-TYPE" 
                    TCGA-IB-7888                     TCGA-IB-7890 
"AMP PEAK 14(17P11.2) WILD-TYPE" "AMP PEAK 14(17P11.2) WILD-TYPE" 
                    TCGA-IB-7891                     TCGA-IB-7893 
"AMP PEAK 14(17P11.2) WILD-TYPE" "AMP PEAK 14(17P11.2) WILD-TYPE" 
                    TCGA-IB-7897                     TCGA-IB-8126 
"AMP PEAK 14(17P11.2) WILD-TYPE" "AMP PEAK 14(17P11.2) WILD-TYPE" 
                    TCGA-IB-8127                     TCGA-IB-A5SO 
"AMP PEAK 14(17P11.2) WILD-TYPE" "AMP PEAK 14(17P11.2) WILD-TYPE" 
                    TCGA-IB-A5SP                     TCGA-IB-A5SQ 
"AMP PEAK 14(17P11.2) WILD-TYPE" "AMP PEAK 14(17P11.2) WILD-TYPE" 
                    TCGA-IB-A5SS                     TCGA-IB-A5ST 
"AMP PEAK 14(17P11.2) WILD-TYPE" "AMP PEAK 14(17P11.2) WILD-TYPE" 
D12V2, continuous
                                vv
clus                             STAGE IA STAGE IB STAGE IIA STAGE IIB
  AMP PEAK 14(17P11.2) MUTATED          0        0         0         3
  AMP PEAK 14(17P11.2) WILD-TYPE        2        3         7        38
                                vv
clus                             STAGE III STAGE IV
  AMP PEAK 14(17P11.2) MUTATED           0        0
  AMP PEAK 14(17P11.2) WILD-TYPE         2        2
D12V3, multiclass
                                vv
clus                             T1+T2 T3+T4
  AMP PEAK 14(17P11.2) MUTATED       0     3
  AMP PEAK 14(17P11.2) WILD-TYPE     6    48
D12V4, multiclass
       clus
vv      AMP PEAK 14(17P11.2) MUTATED AMP PEAK 14(17P11.2) WILD-TYPE
  T1+T2                            0                              6
  T3+T4                            3                             48
D12V5, binary
                                cls
clus                              0  1
  AMP PEAK 14(17P11.2) MUTATED    0  3
  AMP PEAK 14(17P11.2) WILD-TYPE 14 40
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 14(17P11.2) MUTATED      0    3
  AMP PEAK 14(17P11.2) WILD-TYPE   14   40
   clus
vv  AMP PEAK 14(17P11.2) MUTATED AMP PEAK 14(17P11.2) WILD-TYPE
  0                            0                             14
  1                            3                             40
                                vv
clus                             M0 M1 MX
  AMP PEAK 14(17P11.2) MUTATED    2  0  1
  AMP PEAK 14(17P11.2) WILD-TYPE 30  2 22
D12V6, multiclass
    clus
vv   AMP PEAK 14(17P11.2) MUTATED AMP PEAK 14(17P11.2) WILD-TYPE
  M0                            2                             30
  M1                            0                              2
  MX                            1                             22
D12V7, binary
                                cls
clus                              0  1
  AMP PEAK 14(17P11.2) MUTATED    2  1
  AMP PEAK 14(17P11.2) WILD-TYPE 29 25
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 14(17P11.2) MUTATED      2    1
  AMP PEAK 14(17P11.2) WILD-TYPE   29   25
        clus
vv       AMP PEAK 14(17P11.2) MUTATED AMP PEAK 14(17P11.2) WILD-TYPE
  FEMALE                            2                             29
  MALE                              1                             25
                                vv
clus                             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  AMP PEAK 14(17P11.2) MUTATED                                     3
  AMP PEAK 14(17P11.2) WILD-TYPE                                  48
                                vv
clus                             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  AMP PEAK 14(17P11.2) MUTATED                                       0
  AMP PEAK 14(17P11.2) WILD-TYPE                                     4
                                vv
clus                             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  AMP PEAK 14(17P11.2) MUTATED                                                  0
  AMP PEAK 14(17P11.2) WILD-TYPE                                                1
D12V8, multiclass
                                                  clus
vv                                                 AMP PEAK 14(17P11.2) MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                         3
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                       0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                            0
                                                  clus
vv                                                 AMP PEAK 14(17P11.2) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                          48
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                         4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                              1
D12V9, continuous
D12V10, continuous
                                vv
clus                             R0 R1 RX
  AMP PEAK 14(17P11.2) MUTATED    1  1  0
  AMP PEAK 14(17P11.2) WILD-TYPE 31 20  2
D12V11, multiclass
[1] "Remove cluster labels:"       "AMP PEAK 14(17P11.2) MUTATED"
clus
  AMP PEAK 14(17P11.2) MUTATED AMP PEAK 14(17P11.2) WILD-TYPE 
                             2                             53 
                    TCGA-F2-6879                     TCGA-F2-6880 
"AMP PEAK 14(17P11.2) WILD-TYPE" "AMP PEAK 14(17P11.2) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"AMP PEAK 14(17P11.2) WILD-TYPE" "AMP PEAK 14(17P11.2) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
"AMP PEAK 14(17P11.2) WILD-TYPE" "AMP PEAK 14(17P11.2) WILD-TYPE" 
                    TCGA-FB-A4P5                     TCGA-H6-8124 
"AMP PEAK 14(17P11.2) WILD-TYPE" "AMP PEAK 14(17P11.2) WILD-TYPE" 
                    TCGA-HZ-7289                     TCGA-HZ-7918 
"AMP PEAK 14(17P11.2) WILD-TYPE" "AMP PEAK 14(17P11.2) WILD-TYPE" 
                    TCGA-HZ-7919                     TCGA-HZ-7920 
"AMP PEAK 14(17P11.2) WILD-TYPE" "AMP PEAK 14(17P11.2) WILD-TYPE" 
                    TCGA-HZ-7922                     TCGA-HZ-7923 
"AMP PEAK 14(17P11.2) WILD-TYPE" "AMP PEAK 14(17P11.2) WILD-TYPE" 
                    TCGA-HZ-7924                     TCGA-HZ-7925 
"AMP PEAK 14(17P11.2) WILD-TYPE" "AMP PEAK 14(17P11.2) WILD-TYPE" 
                    TCGA-HZ-7926                     TCGA-HZ-8001 
"AMP PEAK 14(17P11.2) WILD-TYPE" "AMP PEAK 14(17P11.2) WILD-TYPE" 
                    TCGA-HZ-8002                     TCGA-HZ-8003 
"AMP PEAK 14(17P11.2) WILD-TYPE" "AMP PEAK 14(17P11.2) WILD-TYPE" 
                    TCGA-HZ-8005                     TCGA-HZ-8315 
"AMP PEAK 14(17P11.2) WILD-TYPE" "AMP PEAK 14(17P11.2) WILD-TYPE" 
                    TCGA-HZ-8317                     TCGA-HZ-8519 
"AMP PEAK 14(17P11.2) WILD-TYPE" "AMP PEAK 14(17P11.2) WILD-TYPE" 
                    TCGA-HZ-8636                     TCGA-HZ-8637 
"AMP PEAK 14(17P11.2) WILD-TYPE" "AMP PEAK 14(17P11.2) WILD-TYPE" 
                    TCGA-HZ-8638                     TCGA-HZ-A49G 
"AMP PEAK 14(17P11.2) WILD-TYPE" "AMP PEAK 14(17P11.2) WILD-TYPE" 
                    TCGA-HZ-A49H                     TCGA-HZ-A4BH 
"AMP PEAK 14(17P11.2) WILD-TYPE" "AMP PEAK 14(17P11.2) WILD-TYPE" 
                    TCGA-HZ-A4BK                     TCGA-IB-7644 
"AMP PEAK 14(17P11.2) WILD-TYPE" "AMP PEAK 14(17P11.2) WILD-TYPE" 
                    TCGA-IB-7645                     TCGA-IB-7646 
"AMP PEAK 14(17P11.2) WILD-TYPE" "AMP PEAK 14(17P11.2) WILD-TYPE" 
                    TCGA-IB-7647                     TCGA-IB-7649 
"AMP PEAK 14(17P11.2) WILD-TYPE" "AMP PEAK 14(17P11.2) WILD-TYPE" 
                    TCGA-IB-7651                     TCGA-IB-7652 
"AMP PEAK 14(17P11.2) WILD-TYPE" "AMP PEAK 14(17P11.2) WILD-TYPE" 
                    TCGA-IB-7885                     TCGA-IB-7886 
"AMP PEAK 14(17P11.2) WILD-TYPE" "AMP PEAK 14(17P11.2) WILD-TYPE" 
                    TCGA-IB-7887                     TCGA-IB-7888 
"AMP PEAK 14(17P11.2) WILD-TYPE" "AMP PEAK 14(17P11.2) WILD-TYPE" 
                    TCGA-IB-7890                     TCGA-IB-7891 
"AMP PEAK 14(17P11.2) WILD-TYPE" "AMP PEAK 14(17P11.2) WILD-TYPE" 
                    TCGA-IB-7893                     TCGA-IB-7897 
"AMP PEAK 14(17P11.2) WILD-TYPE" "AMP PEAK 14(17P11.2) WILD-TYPE" 
                    TCGA-IB-8126                     TCGA-IB-8127 
"AMP PEAK 14(17P11.2) WILD-TYPE" "AMP PEAK 14(17P11.2) WILD-TYPE" 
                    TCGA-IB-A5SO                     TCGA-IB-A5SP 
"AMP PEAK 14(17P11.2) WILD-TYPE" "AMP PEAK 14(17P11.2) WILD-TYPE" 
                    TCGA-IB-A5SQ                     TCGA-IB-A5SS 
"AMP PEAK 14(17P11.2) WILD-TYPE" "AMP PEAK 14(17P11.2) WILD-TYPE" 
                    TCGA-IB-A5ST 
"AMP PEAK 14(17P11.2) WILD-TYPE" 
D12V12, continuous

Clustering(13) Variable = AMP PEAK 15(17Q21.32) MUTATION ANALYSIS
D13V1, survival
                                 sevent
clus2                              0  1
  AMP PEAK 15(17Q21.32) MUTATED    5  2
  AMP PEAK 15(17Q21.32) WILD-TYPE 30 17
  AMP PEAK 15(17Q21.32) MUTATED AMP PEAK 15(17Q21.32) WILD-TYPE 
                              7                              47 
  AMP PEAK 15(17Q21.32) MUTATED AMP PEAK 15(17Q21.32) WILD-TYPE 
                              2                              17 
$`AMP PEAK 15(17Q21.32) MUTATED`
TCGA-FB-A545 TCGA-HZ-7289 TCGA-HZ-7922 TCGA-HZ-A4BH TCGA-IB-7646 TCGA-IB-7891 
        0.03         7.86         0.13         5.98         4.77        16.04 
TCGA-IB-7893 
        3.85 

$`AMP PEAK 15(17Q21.32) WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.96        11.84         7.07         5.03         5.19 
TCGA-FB-A4P5 TCGA-H6-8124 TCGA-H6-A45N TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7923 
        0.13        12.89         7.63         0.92         0.66         0.26 
TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 
       12.13        12.03         0.26         0.62         0.99         0.69 
TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8636 TCGA-HZ-8638 
        3.91         0.92         0.49         0.10         0.16         2.96 
TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7647 
        0.76         1.02         1.51        11.41        49.38        21.86 
TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 
       15.35        19.82        15.65        27.98         4.04         3.58 
TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 
       43.79        15.78        19.66        15.95         0.56        17.13 
TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST 
       10.82         9.83         7.20        15.12         0.26 

  AMP PEAK 15(17Q21.32) MUTATED AMP PEAK 15(17Q21.32) WILD-TYPE 
                           0.03                            0.10 
  AMP PEAK 15(17Q21.32) MUTATED AMP PEAK 15(17Q21.32) WILD-TYPE 
                          16.04                           49.38 
  AMP PEAK 15(17Q21.32) MUTATED AMP PEAK 15(17Q21.32) WILD-TYPE 
                           4.77                            7.07 
[1] "0.0 - 16.0 (4.8)" "0.1 - 49.4 (7.1)"
                     TCGA-F2-6879                      TCGA-F2-6880 
"AMP PEAK 15(17Q21.32) WILD-TYPE" "AMP PEAK 15(17Q21.32) WILD-TYPE" 
                     TCGA-F2-7273                      TCGA-F2-7276 
"AMP PEAK 15(17Q21.32) WILD-TYPE" "AMP PEAK 15(17Q21.32) WILD-TYPE" 
                     TCGA-F2-A44G                      TCGA-F2-A44H 
"AMP PEAK 15(17Q21.32) WILD-TYPE" "AMP PEAK 15(17Q21.32) WILD-TYPE" 
                     TCGA-FB-A4P5                      TCGA-FB-A545 
"AMP PEAK 15(17Q21.32) WILD-TYPE"   "AMP PEAK 15(17Q21.32) MUTATED" 
                     TCGA-H6-8124                      TCGA-H6-A45N 
"AMP PEAK 15(17Q21.32) WILD-TYPE" "AMP PEAK 15(17Q21.32) WILD-TYPE" 
                     TCGA-HZ-7289                      TCGA-HZ-7918 
  "AMP PEAK 15(17Q21.32) MUTATED" "AMP PEAK 15(17Q21.32) WILD-TYPE" 
                     TCGA-HZ-7919                      TCGA-HZ-7922 
"AMP PEAK 15(17Q21.32) WILD-TYPE"   "AMP PEAK 15(17Q21.32) MUTATED" 
                     TCGA-HZ-7923                      TCGA-HZ-7924 
"AMP PEAK 15(17Q21.32) WILD-TYPE" "AMP PEAK 15(17Q21.32) WILD-TYPE" 
                     TCGA-HZ-7925                      TCGA-HZ-7926 
"AMP PEAK 15(17Q21.32) WILD-TYPE" "AMP PEAK 15(17Q21.32) WILD-TYPE" 
                     TCGA-HZ-8001                      TCGA-HZ-8002 
"AMP PEAK 15(17Q21.32) WILD-TYPE" "AMP PEAK 15(17Q21.32) WILD-TYPE" 
                     TCGA-HZ-8003                      TCGA-HZ-8005 
"AMP PEAK 15(17Q21.32) WILD-TYPE" "AMP PEAK 15(17Q21.32) WILD-TYPE" 
                     TCGA-HZ-8315                      TCGA-HZ-8317 
"AMP PEAK 15(17Q21.32) WILD-TYPE" "AMP PEAK 15(17Q21.32) WILD-TYPE" 
                     TCGA-HZ-8519                      TCGA-HZ-8636 
"AMP PEAK 15(17Q21.32) WILD-TYPE" "AMP PEAK 15(17Q21.32) WILD-TYPE" 
                     TCGA-HZ-8638                      TCGA-HZ-A49G 
"AMP PEAK 15(17Q21.32) WILD-TYPE" "AMP PEAK 15(17Q21.32) WILD-TYPE" 
                     TCGA-HZ-A49H                      TCGA-HZ-A4BH 
"AMP PEAK 15(17Q21.32) WILD-TYPE"   "AMP PEAK 15(17Q21.32) MUTATED" 
                     TCGA-HZ-A4BK                      TCGA-IB-7644 
"AMP PEAK 15(17Q21.32) WILD-TYPE" "AMP PEAK 15(17Q21.32) WILD-TYPE" 
                     TCGA-IB-7645                      TCGA-IB-7646 
"AMP PEAK 15(17Q21.32) WILD-TYPE"   "AMP PEAK 15(17Q21.32) MUTATED" 
                     TCGA-IB-7647                      TCGA-IB-7649 
"AMP PEAK 15(17Q21.32) WILD-TYPE" "AMP PEAK 15(17Q21.32) WILD-TYPE" 
                     TCGA-IB-7651                      TCGA-IB-7652 
"AMP PEAK 15(17Q21.32) WILD-TYPE" "AMP PEAK 15(17Q21.32) WILD-TYPE" 
                     TCGA-IB-7885                      TCGA-IB-7886 
"AMP PEAK 15(17Q21.32) WILD-TYPE" "AMP PEAK 15(17Q21.32) WILD-TYPE" 
                     TCGA-IB-7887                      TCGA-IB-7888 
"AMP PEAK 15(17Q21.32) WILD-TYPE" "AMP PEAK 15(17Q21.32) WILD-TYPE" 
                     TCGA-IB-7889                      TCGA-IB-7890 
"AMP PEAK 15(17Q21.32) WILD-TYPE" "AMP PEAK 15(17Q21.32) WILD-TYPE" 
                     TCGA-IB-7891                      TCGA-IB-7893 
  "AMP PEAK 15(17Q21.32) MUTATED"   "AMP PEAK 15(17Q21.32) MUTATED" 
                     TCGA-IB-7897                      TCGA-IB-8126 
"AMP PEAK 15(17Q21.32) WILD-TYPE" "AMP PEAK 15(17Q21.32) WILD-TYPE" 
                     TCGA-IB-8127                      TCGA-IB-A5SO 
"AMP PEAK 15(17Q21.32) WILD-TYPE" "AMP PEAK 15(17Q21.32) WILD-TYPE" 
                     TCGA-IB-A5SP                      TCGA-IB-A5SQ 
"AMP PEAK 15(17Q21.32) WILD-TYPE" "AMP PEAK 15(17Q21.32) WILD-TYPE" 
                     TCGA-IB-A5SS                      TCGA-IB-A5ST 
"AMP PEAK 15(17Q21.32) WILD-TYPE" "AMP PEAK 15(17Q21.32) WILD-TYPE" 
                     TCGA-F2-6879                      TCGA-F2-6880 
"AMP PEAK 15(17Q21.32) WILD-TYPE" "AMP PEAK 15(17Q21.32) WILD-TYPE" 
                     TCGA-F2-7273                      TCGA-F2-7276 
"AMP PEAK 15(17Q21.32) WILD-TYPE" "AMP PEAK 15(17Q21.32) WILD-TYPE" 
                     TCGA-F2-A44G                      TCGA-F2-A44H 
"AMP PEAK 15(17Q21.32) WILD-TYPE" "AMP PEAK 15(17Q21.32) WILD-TYPE" 
                     TCGA-FB-A4P5                      TCGA-FB-A545 
"AMP PEAK 15(17Q21.32) WILD-TYPE"   "AMP PEAK 15(17Q21.32) MUTATED" 
                     TCGA-H6-8124                      TCGA-H6-A45N 
"AMP PEAK 15(17Q21.32) WILD-TYPE" "AMP PEAK 15(17Q21.32) WILD-TYPE" 
                     TCGA-HZ-7289                      TCGA-HZ-7918 
  "AMP PEAK 15(17Q21.32) MUTATED" "AMP PEAK 15(17Q21.32) WILD-TYPE" 
                     TCGA-HZ-7919                      TCGA-HZ-7922 
"AMP PEAK 15(17Q21.32) WILD-TYPE"   "AMP PEAK 15(17Q21.32) MUTATED" 
                     TCGA-HZ-7923                      TCGA-HZ-7924 
"AMP PEAK 15(17Q21.32) WILD-TYPE" "AMP PEAK 15(17Q21.32) WILD-TYPE" 
                     TCGA-HZ-7925                      TCGA-HZ-7926 
"AMP PEAK 15(17Q21.32) WILD-TYPE" "AMP PEAK 15(17Q21.32) WILD-TYPE" 
                     TCGA-HZ-8001                      TCGA-HZ-8002 
"AMP PEAK 15(17Q21.32) WILD-TYPE" "AMP PEAK 15(17Q21.32) WILD-TYPE" 
                     TCGA-HZ-8003                      TCGA-HZ-8005 
"AMP PEAK 15(17Q21.32) WILD-TYPE" "AMP PEAK 15(17Q21.32) WILD-TYPE" 
                     TCGA-HZ-8315                      TCGA-HZ-8317 
"AMP PEAK 15(17Q21.32) WILD-TYPE" "AMP PEAK 15(17Q21.32) WILD-TYPE" 
                     TCGA-HZ-8519                      TCGA-HZ-8636 
"AMP PEAK 15(17Q21.32) WILD-TYPE" "AMP PEAK 15(17Q21.32) WILD-TYPE" 
                     TCGA-HZ-8638                      TCGA-HZ-A49G 
"AMP PEAK 15(17Q21.32) WILD-TYPE" "AMP PEAK 15(17Q21.32) WILD-TYPE" 
                     TCGA-HZ-A49H                      TCGA-HZ-A4BH 
"AMP PEAK 15(17Q21.32) WILD-TYPE"   "AMP PEAK 15(17Q21.32) MUTATED" 
                     TCGA-HZ-A4BK                      TCGA-IB-7644 
"AMP PEAK 15(17Q21.32) WILD-TYPE" "AMP PEAK 15(17Q21.32) WILD-TYPE" 
                     TCGA-IB-7645                      TCGA-IB-7646 
"AMP PEAK 15(17Q21.32) WILD-TYPE"   "AMP PEAK 15(17Q21.32) MUTATED" 
                     TCGA-IB-7647                      TCGA-IB-7649 
"AMP PEAK 15(17Q21.32) WILD-TYPE" "AMP PEAK 15(17Q21.32) WILD-TYPE" 
                     TCGA-IB-7651                      TCGA-IB-7652 
"AMP PEAK 15(17Q21.32) WILD-TYPE" "AMP PEAK 15(17Q21.32) WILD-TYPE" 
                     TCGA-IB-7885                      TCGA-IB-7886 
"AMP PEAK 15(17Q21.32) WILD-TYPE" "AMP PEAK 15(17Q21.32) WILD-TYPE" 
                     TCGA-IB-7887                      TCGA-IB-7888 
"AMP PEAK 15(17Q21.32) WILD-TYPE" "AMP PEAK 15(17Q21.32) WILD-TYPE" 
                     TCGA-IB-7889                      TCGA-IB-7890 
"AMP PEAK 15(17Q21.32) WILD-TYPE" "AMP PEAK 15(17Q21.32) WILD-TYPE" 
                     TCGA-IB-7891                      TCGA-IB-7893 
  "AMP PEAK 15(17Q21.32) MUTATED"   "AMP PEAK 15(17Q21.32) MUTATED" 
                     TCGA-IB-7897                      TCGA-IB-8126 
"AMP PEAK 15(17Q21.32) WILD-TYPE" "AMP PEAK 15(17Q21.32) WILD-TYPE" 
                     TCGA-IB-8127                      TCGA-IB-A5SO 
"AMP PEAK 15(17Q21.32) WILD-TYPE" "AMP PEAK 15(17Q21.32) WILD-TYPE" 
                     TCGA-IB-A5SP                      TCGA-IB-A5SQ 
"AMP PEAK 15(17Q21.32) WILD-TYPE" "AMP PEAK 15(17Q21.32) WILD-TYPE" 
                     TCGA-IB-A5SS                      TCGA-IB-A5ST 
"AMP PEAK 15(17Q21.32) WILD-TYPE" "AMP PEAK 15(17Q21.32) WILD-TYPE" 
                     TCGA-F2-6879                      TCGA-F2-6880 
"AMP PEAK 15(17Q21.32) WILD-TYPE" "AMP PEAK 15(17Q21.32) WILD-TYPE" 
                     TCGA-F2-7273                      TCGA-F2-7276 
"AMP PEAK 15(17Q21.32) WILD-TYPE" "AMP PEAK 15(17Q21.32) WILD-TYPE" 
                     TCGA-F2-A44G                      TCGA-F2-A44H 
"AMP PEAK 15(17Q21.32) WILD-TYPE" "AMP PEAK 15(17Q21.32) WILD-TYPE" 
                     TCGA-FB-A4P5                      TCGA-FB-A545 
"AMP PEAK 15(17Q21.32) WILD-TYPE"   "AMP PEAK 15(17Q21.32) MUTATED" 
                     TCGA-H6-8124                      TCGA-H6-A45N 
"AMP PEAK 15(17Q21.32) WILD-TYPE" "AMP PEAK 15(17Q21.32) WILD-TYPE" 
                     TCGA-HZ-7289                      TCGA-HZ-7918 
  "AMP PEAK 15(17Q21.32) MUTATED" "AMP PEAK 15(17Q21.32) WILD-TYPE" 
                     TCGA-HZ-7919                      TCGA-HZ-7922 
"AMP PEAK 15(17Q21.32) WILD-TYPE"   "AMP PEAK 15(17Q21.32) MUTATED" 
                     TCGA-HZ-7923                      TCGA-HZ-7924 
"AMP PEAK 15(17Q21.32) WILD-TYPE" "AMP PEAK 15(17Q21.32) WILD-TYPE" 
                     TCGA-HZ-7925                      TCGA-HZ-7926 
"AMP PEAK 15(17Q21.32) WILD-TYPE" "AMP PEAK 15(17Q21.32) WILD-TYPE" 
                     TCGA-HZ-8001                      TCGA-HZ-8002 
"AMP PEAK 15(17Q21.32) WILD-TYPE" "AMP PEAK 15(17Q21.32) WILD-TYPE" 
                     TCGA-HZ-8003                      TCGA-HZ-8005 
"AMP PEAK 15(17Q21.32) WILD-TYPE" "AMP PEAK 15(17Q21.32) WILD-TYPE" 
                     TCGA-HZ-8315                      TCGA-HZ-8317 
"AMP PEAK 15(17Q21.32) WILD-TYPE" "AMP PEAK 15(17Q21.32) WILD-TYPE" 
                     TCGA-HZ-8519                      TCGA-HZ-8636 
"AMP PEAK 15(17Q21.32) WILD-TYPE" "AMP PEAK 15(17Q21.32) WILD-TYPE" 
                     TCGA-HZ-8638                      TCGA-HZ-A49G 
"AMP PEAK 15(17Q21.32) WILD-TYPE" "AMP PEAK 15(17Q21.32) WILD-TYPE" 
                     TCGA-HZ-A49H                      TCGA-HZ-A4BH 
"AMP PEAK 15(17Q21.32) WILD-TYPE"   "AMP PEAK 15(17Q21.32) MUTATED" 
                     TCGA-HZ-A4BK                      TCGA-IB-7644 
"AMP PEAK 15(17Q21.32) WILD-TYPE" "AMP PEAK 15(17Q21.32) WILD-TYPE" 
                     TCGA-IB-7645                      TCGA-IB-7646 
"AMP PEAK 15(17Q21.32) WILD-TYPE"   "AMP PEAK 15(17Q21.32) MUTATED" 
                     TCGA-IB-7647                      TCGA-IB-7649 
"AMP PEAK 15(17Q21.32) WILD-TYPE" "AMP PEAK 15(17Q21.32) WILD-TYPE" 
                     TCGA-IB-7651                      TCGA-IB-7652 
"AMP PEAK 15(17Q21.32) WILD-TYPE" "AMP PEAK 15(17Q21.32) WILD-TYPE" 
                     TCGA-IB-7885                      TCGA-IB-7886 
"AMP PEAK 15(17Q21.32) WILD-TYPE" "AMP PEAK 15(17Q21.32) WILD-TYPE" 
                     TCGA-IB-7887                      TCGA-IB-7888 
"AMP PEAK 15(17Q21.32) WILD-TYPE" "AMP PEAK 15(17Q21.32) WILD-TYPE" 
                     TCGA-IB-7889                      TCGA-IB-7890 
"AMP PEAK 15(17Q21.32) WILD-TYPE" "AMP PEAK 15(17Q21.32) WILD-TYPE" 
                     TCGA-IB-7891                      TCGA-IB-7893 
  "AMP PEAK 15(17Q21.32) MUTATED"   "AMP PEAK 15(17Q21.32) MUTATED" 
                     TCGA-IB-7897                      TCGA-IB-8126 
"AMP PEAK 15(17Q21.32) WILD-TYPE" "AMP PEAK 15(17Q21.32) WILD-TYPE" 
                     TCGA-IB-8127                      TCGA-IB-A5SO 
"AMP PEAK 15(17Q21.32) WILD-TYPE" "AMP PEAK 15(17Q21.32) WILD-TYPE" 
                     TCGA-IB-A5SP                      TCGA-IB-A5SQ 
"AMP PEAK 15(17Q21.32) WILD-TYPE" "AMP PEAK 15(17Q21.32) WILD-TYPE" 
                     TCGA-IB-A5SS                      TCGA-IB-A5ST 
"AMP PEAK 15(17Q21.32) WILD-TYPE" "AMP PEAK 15(17Q21.32) WILD-TYPE" 
[1] "hr=" "1.5"
D13V2, continuous
                                 vv
clus                              STAGE IA STAGE IB STAGE IIA STAGE IIB
  AMP PEAK 15(17Q21.32) MUTATED          0        0         1         6
  AMP PEAK 15(17Q21.32) WILD-TYPE        2        3         6        35
                                 vv
clus                              STAGE III STAGE IV
  AMP PEAK 15(17Q21.32) MUTATED           0        0
  AMP PEAK 15(17Q21.32) WILD-TYPE         2        2
D13V3, multiclass
                                 vv
clus                              T1+T2 T3+T4
  AMP PEAK 15(17Q21.32) MUTATED       0     7
  AMP PEAK 15(17Q21.32) WILD-TYPE     6    44
D13V4, multiclass
       clus
vv      AMP PEAK 15(17Q21.32) MUTATED AMP PEAK 15(17Q21.32) WILD-TYPE
  T1+T2                             0                               6
  T3+T4                             7                              44
D13V5, binary
                                 cls
clus                               0  1
  AMP PEAK 15(17Q21.32) MUTATED    1  6
  AMP PEAK 15(17Q21.32) WILD-TYPE 13 37
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 15(17Q21.32) MUTATED      1    6
  AMP PEAK 15(17Q21.32) WILD-TYPE   13   37
   clus
vv  AMP PEAK 15(17Q21.32) MUTATED AMP PEAK 15(17Q21.32) WILD-TYPE
  0                             1                              13
  1                             6                              37
                                 vv
clus                              M0 M1 MX
  AMP PEAK 15(17Q21.32) MUTATED    4  0  3
  AMP PEAK 15(17Q21.32) WILD-TYPE 28  2 20
D13V6, multiclass
    clus
vv   AMP PEAK 15(17Q21.32) MUTATED AMP PEAK 15(17Q21.32) WILD-TYPE
  M0                             4                              28
  M1                             0                               2
  MX                             3                              20
D13V7, binary
                                 cls
clus                               0  1
  AMP PEAK 15(17Q21.32) MUTATED    2  5
  AMP PEAK 15(17Q21.32) WILD-TYPE 29 21
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 15(17Q21.32) MUTATED      2    5
  AMP PEAK 15(17Q21.32) WILD-TYPE   29   21
        clus
vv       AMP PEAK 15(17Q21.32) MUTATED AMP PEAK 15(17Q21.32) WILD-TYPE
  FEMALE                             2                              29
  MALE                               5                              21
                                 vv
clus                              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  AMP PEAK 15(17Q21.32) MUTATED                                     6
  AMP PEAK 15(17Q21.32) WILD-TYPE                                  45
                                 vv
clus                              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  AMP PEAK 15(17Q21.32) MUTATED                                       1
  AMP PEAK 15(17Q21.32) WILD-TYPE                                     3
                                 vv
clus                              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  AMP PEAK 15(17Q21.32) MUTATED                                                  0
  AMP PEAK 15(17Q21.32) WILD-TYPE                                                1
D13V8, multiclass
                                                  clus
vv                                                 AMP PEAK 15(17Q21.32) MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                          6
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                        1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                             0
                                                  clus
vv                                                 AMP PEAK 15(17Q21.32) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                           45
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                          3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                               1
D13V9, continuous
[1] "Remove cluster labels:"        "AMP PEAK 15(17Q21.32) MUTATED"
clus
  AMP PEAK 15(17Q21.32) MUTATED AMP PEAK 15(17Q21.32) WILD-TYPE 
                              1                              13 
                     TCGA-F2-6880                      TCGA-FB-A4P5 
"AMP PEAK 15(17Q21.32) WILD-TYPE" "AMP PEAK 15(17Q21.32) WILD-TYPE" 
                     TCGA-H6-8124                      TCGA-H6-A45N 
"AMP PEAK 15(17Q21.32) WILD-TYPE" "AMP PEAK 15(17Q21.32) WILD-TYPE" 
                     TCGA-IB-7644                      TCGA-IB-7649 
"AMP PEAK 15(17Q21.32) WILD-TYPE" "AMP PEAK 15(17Q21.32) WILD-TYPE" 
                     TCGA-IB-7651                      TCGA-IB-7885 
"AMP PEAK 15(17Q21.32) WILD-TYPE" "AMP PEAK 15(17Q21.32) WILD-TYPE" 
                     TCGA-IB-7886                      TCGA-IB-7887 
"AMP PEAK 15(17Q21.32) WILD-TYPE" "AMP PEAK 15(17Q21.32) WILD-TYPE" 
                     TCGA-IB-8126                      TCGA-IB-8127 
"AMP PEAK 15(17Q21.32) WILD-TYPE" "AMP PEAK 15(17Q21.32) WILD-TYPE" 
                     TCGA-IB-A5SS 
"AMP PEAK 15(17Q21.32) WILD-TYPE" 
D13V10, continuous
[1] "Remove cluster labels:"        "AMP PEAK 15(17Q21.32) MUTATED"
clus
  AMP PEAK 15(17Q21.32) MUTATED AMP PEAK 15(17Q21.32) WILD-TYPE 
                              1                              10 
                     TCGA-FB-A4P5                      TCGA-H6-8124 
"AMP PEAK 15(17Q21.32) WILD-TYPE" "AMP PEAK 15(17Q21.32) WILD-TYPE" 
                     TCGA-IB-7644                      TCGA-IB-7649 
"AMP PEAK 15(17Q21.32) WILD-TYPE" "AMP PEAK 15(17Q21.32) WILD-TYPE" 
                     TCGA-IB-7651                      TCGA-IB-7885 
"AMP PEAK 15(17Q21.32) WILD-TYPE" "AMP PEAK 15(17Q21.32) WILD-TYPE" 
                     TCGA-IB-7886                      TCGA-IB-8126 
"AMP PEAK 15(17Q21.32) WILD-TYPE" "AMP PEAK 15(17Q21.32) WILD-TYPE" 
                     TCGA-IB-8127                      TCGA-IB-A5SS 
"AMP PEAK 15(17Q21.32) WILD-TYPE" "AMP PEAK 15(17Q21.32) WILD-TYPE" 
                                 vv
clus                              R0 R1 RX
  AMP PEAK 15(17Q21.32) MUTATED    3  2  1
  AMP PEAK 15(17Q21.32) WILD-TYPE 29 19  1
D13V11, multiclass
    clus
vv   AMP PEAK 15(17Q21.32) MUTATED AMP PEAK 15(17Q21.32) WILD-TYPE
  R0                             3                              29
  R1                             2                              19
  RX                             1                               1
D13V12, continuous

Clustering(14) Variable = AMP PEAK 16(18Q11.2) MUTATION ANALYSIS
D14V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 16(18Q11.2) MUTATED   12  4
  AMP PEAK 16(18Q11.2) WILD-TYPE 23 15
  AMP PEAK 16(18Q11.2) MUTATED AMP PEAK 16(18Q11.2) WILD-TYPE 
                            16                             38 
  AMP PEAK 16(18Q11.2) MUTATED AMP PEAK 16(18Q11.2) WILD-TYPE 
                             4                             15 
$`AMP PEAK 16(18Q11.2) MUTATED`
TCGA-F2-6879 TCGA-F2-A44G TCGA-FB-A545 TCGA-H6-8124 TCGA-HZ-7919 TCGA-HZ-7925 
       10.98         5.03         0.03        12.89         0.66        12.03 
TCGA-HZ-8636 TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7649 TCGA-IB-7886 TCGA-IB-7893 
        0.16         1.51        11.41        15.35         4.04         3.85 
TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP 
        0.56        17.13        10.82         9.83 

$`AMP PEAK 16(18Q11.2) WILD-TYPE`
TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44H TCGA-FB-A4P5 TCGA-H6-A45N 
        9.96        11.84         7.07         5.19         0.13         7.63 
TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7926 
        7.86         0.92         0.13         0.26        12.13         0.26 
TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 
        0.62         0.99         0.69         3.91         0.92         0.49 
TCGA-HZ-8519 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-IB-7645 
        0.10         2.96         0.76         1.02         5.98        49.38 
TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7887 
        4.77        21.86        19.82        15.65        27.98         3.58 
TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7897 TCGA-IB-A5SQ 
       43.79        15.78        19.66        16.04        15.95         7.20 
TCGA-IB-A5SS TCGA-IB-A5ST 
       15.12         0.26 

  AMP PEAK 16(18Q11.2) MUTATED AMP PEAK 16(18Q11.2) WILD-TYPE 
                          0.03                           0.10 
  AMP PEAK 16(18Q11.2) MUTATED AMP PEAK 16(18Q11.2) WILD-TYPE 
                         17.13                          49.38 
  AMP PEAK 16(18Q11.2) MUTATED AMP PEAK 16(18Q11.2) WILD-TYPE 
                         7.430                          5.585 
[1] "0.0 - 17.1 (7.4)" "0.1 - 49.4 (5.6)"
                    TCGA-F2-6879                     TCGA-F2-6880 
  "AMP PEAK 16(18Q11.2) MUTATED" "AMP PEAK 16(18Q11.2) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"AMP PEAK 16(18Q11.2) WILD-TYPE" "AMP PEAK 16(18Q11.2) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
  "AMP PEAK 16(18Q11.2) MUTATED" "AMP PEAK 16(18Q11.2) WILD-TYPE" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"AMP PEAK 16(18Q11.2) WILD-TYPE"   "AMP PEAK 16(18Q11.2) MUTATED" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
  "AMP PEAK 16(18Q11.2) MUTATED" "AMP PEAK 16(18Q11.2) WILD-TYPE" 
                    TCGA-HZ-7289                     TCGA-HZ-7918 
"AMP PEAK 16(18Q11.2) WILD-TYPE" "AMP PEAK 16(18Q11.2) WILD-TYPE" 
                    TCGA-HZ-7919                     TCGA-HZ-7922 
  "AMP PEAK 16(18Q11.2) MUTATED" "AMP PEAK 16(18Q11.2) WILD-TYPE" 
                    TCGA-HZ-7923                     TCGA-HZ-7924 
"AMP PEAK 16(18Q11.2) WILD-TYPE" "AMP PEAK 16(18Q11.2) WILD-TYPE" 
                    TCGA-HZ-7925                     TCGA-HZ-7926 
  "AMP PEAK 16(18Q11.2) MUTATED" "AMP PEAK 16(18Q11.2) WILD-TYPE" 
                    TCGA-HZ-8001                     TCGA-HZ-8002 
"AMP PEAK 16(18Q11.2) WILD-TYPE" "AMP PEAK 16(18Q11.2) WILD-TYPE" 
                    TCGA-HZ-8003                     TCGA-HZ-8005 
"AMP PEAK 16(18Q11.2) WILD-TYPE" "AMP PEAK 16(18Q11.2) WILD-TYPE" 
                    TCGA-HZ-8315                     TCGA-HZ-8317 
"AMP PEAK 16(18Q11.2) WILD-TYPE" "AMP PEAK 16(18Q11.2) WILD-TYPE" 
                    TCGA-HZ-8519                     TCGA-HZ-8636 
"AMP PEAK 16(18Q11.2) WILD-TYPE"   "AMP PEAK 16(18Q11.2) MUTATED" 
                    TCGA-HZ-8638                     TCGA-HZ-A49G 
"AMP PEAK 16(18Q11.2) WILD-TYPE" "AMP PEAK 16(18Q11.2) WILD-TYPE" 
                    TCGA-HZ-A49H                     TCGA-HZ-A4BH 
"AMP PEAK 16(18Q11.2) WILD-TYPE" "AMP PEAK 16(18Q11.2) WILD-TYPE" 
                    TCGA-HZ-A4BK                     TCGA-IB-7644 
  "AMP PEAK 16(18Q11.2) MUTATED"   "AMP PEAK 16(18Q11.2) MUTATED" 
                    TCGA-IB-7645                     TCGA-IB-7646 
"AMP PEAK 16(18Q11.2) WILD-TYPE" "AMP PEAK 16(18Q11.2) WILD-TYPE" 
                    TCGA-IB-7647                     TCGA-IB-7649 
"AMP PEAK 16(18Q11.2) WILD-TYPE"   "AMP PEAK 16(18Q11.2) MUTATED" 
                    TCGA-IB-7651                     TCGA-IB-7652 
"AMP PEAK 16(18Q11.2) WILD-TYPE" "AMP PEAK 16(18Q11.2) WILD-TYPE" 
                    TCGA-IB-7885                     TCGA-IB-7886 
"AMP PEAK 16(18Q11.2) WILD-TYPE"   "AMP PEAK 16(18Q11.2) MUTATED" 
                    TCGA-IB-7887                     TCGA-IB-7888 
"AMP PEAK 16(18Q11.2) WILD-TYPE" "AMP PEAK 16(18Q11.2) WILD-TYPE" 
                    TCGA-IB-7889                     TCGA-IB-7890 
"AMP PEAK 16(18Q11.2) WILD-TYPE" "AMP PEAK 16(18Q11.2) WILD-TYPE" 
                    TCGA-IB-7891                     TCGA-IB-7893 
"AMP PEAK 16(18Q11.2) WILD-TYPE"   "AMP PEAK 16(18Q11.2) MUTATED" 
                    TCGA-IB-7897                     TCGA-IB-8126 
"AMP PEAK 16(18Q11.2) WILD-TYPE"   "AMP PEAK 16(18Q11.2) MUTATED" 
                    TCGA-IB-8127                     TCGA-IB-A5SO 
  "AMP PEAK 16(18Q11.2) MUTATED"   "AMP PEAK 16(18Q11.2) MUTATED" 
                    TCGA-IB-A5SP                     TCGA-IB-A5SQ 
  "AMP PEAK 16(18Q11.2) MUTATED" "AMP PEAK 16(18Q11.2) WILD-TYPE" 
                    TCGA-IB-A5SS                     TCGA-IB-A5ST 
"AMP PEAK 16(18Q11.2) WILD-TYPE" "AMP PEAK 16(18Q11.2) WILD-TYPE" 
                    TCGA-F2-6879                     TCGA-F2-6880 
  "AMP PEAK 16(18Q11.2) MUTATED" "AMP PEAK 16(18Q11.2) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"AMP PEAK 16(18Q11.2) WILD-TYPE" "AMP PEAK 16(18Q11.2) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
  "AMP PEAK 16(18Q11.2) MUTATED" "AMP PEAK 16(18Q11.2) WILD-TYPE" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"AMP PEAK 16(18Q11.2) WILD-TYPE"   "AMP PEAK 16(18Q11.2) MUTATED" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
  "AMP PEAK 16(18Q11.2) MUTATED" "AMP PEAK 16(18Q11.2) WILD-TYPE" 
                    TCGA-HZ-7289                     TCGA-HZ-7918 
"AMP PEAK 16(18Q11.2) WILD-TYPE" "AMP PEAK 16(18Q11.2) WILD-TYPE" 
                    TCGA-HZ-7919                     TCGA-HZ-7922 
  "AMP PEAK 16(18Q11.2) MUTATED" "AMP PEAK 16(18Q11.2) WILD-TYPE" 
                    TCGA-HZ-7923                     TCGA-HZ-7924 
"AMP PEAK 16(18Q11.2) WILD-TYPE" "AMP PEAK 16(18Q11.2) WILD-TYPE" 
                    TCGA-HZ-7925                     TCGA-HZ-7926 
  "AMP PEAK 16(18Q11.2) MUTATED" "AMP PEAK 16(18Q11.2) WILD-TYPE" 
                    TCGA-HZ-8001                     TCGA-HZ-8002 
"AMP PEAK 16(18Q11.2) WILD-TYPE" "AMP PEAK 16(18Q11.2) WILD-TYPE" 
                    TCGA-HZ-8003                     TCGA-HZ-8005 
"AMP PEAK 16(18Q11.2) WILD-TYPE" "AMP PEAK 16(18Q11.2) WILD-TYPE" 
                    TCGA-HZ-8315                     TCGA-HZ-8317 
"AMP PEAK 16(18Q11.2) WILD-TYPE" "AMP PEAK 16(18Q11.2) WILD-TYPE" 
                    TCGA-HZ-8519                     TCGA-HZ-8636 
"AMP PEAK 16(18Q11.2) WILD-TYPE"   "AMP PEAK 16(18Q11.2) MUTATED" 
                    TCGA-HZ-8638                     TCGA-HZ-A49G 
"AMP PEAK 16(18Q11.2) WILD-TYPE" "AMP PEAK 16(18Q11.2) WILD-TYPE" 
                    TCGA-HZ-A49H                     TCGA-HZ-A4BH 
"AMP PEAK 16(18Q11.2) WILD-TYPE" "AMP PEAK 16(18Q11.2) WILD-TYPE" 
                    TCGA-HZ-A4BK                     TCGA-IB-7644 
  "AMP PEAK 16(18Q11.2) MUTATED"   "AMP PEAK 16(18Q11.2) MUTATED" 
                    TCGA-IB-7645                     TCGA-IB-7646 
"AMP PEAK 16(18Q11.2) WILD-TYPE" "AMP PEAK 16(18Q11.2) WILD-TYPE" 
                    TCGA-IB-7647                     TCGA-IB-7649 
"AMP PEAK 16(18Q11.2) WILD-TYPE"   "AMP PEAK 16(18Q11.2) MUTATED" 
                    TCGA-IB-7651                     TCGA-IB-7652 
"AMP PEAK 16(18Q11.2) WILD-TYPE" "AMP PEAK 16(18Q11.2) WILD-TYPE" 
                    TCGA-IB-7885                     TCGA-IB-7886 
"AMP PEAK 16(18Q11.2) WILD-TYPE"   "AMP PEAK 16(18Q11.2) MUTATED" 
                    TCGA-IB-7887                     TCGA-IB-7888 
"AMP PEAK 16(18Q11.2) WILD-TYPE" "AMP PEAK 16(18Q11.2) WILD-TYPE" 
                    TCGA-IB-7889                     TCGA-IB-7890 
"AMP PEAK 16(18Q11.2) WILD-TYPE" "AMP PEAK 16(18Q11.2) WILD-TYPE" 
                    TCGA-IB-7891                     TCGA-IB-7893 
"AMP PEAK 16(18Q11.2) WILD-TYPE"   "AMP PEAK 16(18Q11.2) MUTATED" 
                    TCGA-IB-7897                     TCGA-IB-8126 
"AMP PEAK 16(18Q11.2) WILD-TYPE"   "AMP PEAK 16(18Q11.2) MUTATED" 
                    TCGA-IB-8127                     TCGA-IB-A5SO 
  "AMP PEAK 16(18Q11.2) MUTATED"   "AMP PEAK 16(18Q11.2) MUTATED" 
                    TCGA-IB-A5SP                     TCGA-IB-A5SQ 
  "AMP PEAK 16(18Q11.2) MUTATED" "AMP PEAK 16(18Q11.2) WILD-TYPE" 
                    TCGA-IB-A5SS                     TCGA-IB-A5ST 
"AMP PEAK 16(18Q11.2) WILD-TYPE" "AMP PEAK 16(18Q11.2) WILD-TYPE" 
                    TCGA-F2-6879                     TCGA-F2-6880 
  "AMP PEAK 16(18Q11.2) MUTATED" "AMP PEAK 16(18Q11.2) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"AMP PEAK 16(18Q11.2) WILD-TYPE" "AMP PEAK 16(18Q11.2) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
  "AMP PEAK 16(18Q11.2) MUTATED" "AMP PEAK 16(18Q11.2) WILD-TYPE" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"AMP PEAK 16(18Q11.2) WILD-TYPE"   "AMP PEAK 16(18Q11.2) MUTATED" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
  "AMP PEAK 16(18Q11.2) MUTATED" "AMP PEAK 16(18Q11.2) WILD-TYPE" 
                    TCGA-HZ-7289                     TCGA-HZ-7918 
"AMP PEAK 16(18Q11.2) WILD-TYPE" "AMP PEAK 16(18Q11.2) WILD-TYPE" 
                    TCGA-HZ-7919                     TCGA-HZ-7922 
  "AMP PEAK 16(18Q11.2) MUTATED" "AMP PEAK 16(18Q11.2) WILD-TYPE" 
                    TCGA-HZ-7923                     TCGA-HZ-7924 
"AMP PEAK 16(18Q11.2) WILD-TYPE" "AMP PEAK 16(18Q11.2) WILD-TYPE" 
                    TCGA-HZ-7925                     TCGA-HZ-7926 
  "AMP PEAK 16(18Q11.2) MUTATED" "AMP PEAK 16(18Q11.2) WILD-TYPE" 
                    TCGA-HZ-8001                     TCGA-HZ-8002 
"AMP PEAK 16(18Q11.2) WILD-TYPE" "AMP PEAK 16(18Q11.2) WILD-TYPE" 
                    TCGA-HZ-8003                     TCGA-HZ-8005 
"AMP PEAK 16(18Q11.2) WILD-TYPE" "AMP PEAK 16(18Q11.2) WILD-TYPE" 
                    TCGA-HZ-8315                     TCGA-HZ-8317 
"AMP PEAK 16(18Q11.2) WILD-TYPE" "AMP PEAK 16(18Q11.2) WILD-TYPE" 
                    TCGA-HZ-8519                     TCGA-HZ-8636 
"AMP PEAK 16(18Q11.2) WILD-TYPE"   "AMP PEAK 16(18Q11.2) MUTATED" 
                    TCGA-HZ-8638                     TCGA-HZ-A49G 
"AMP PEAK 16(18Q11.2) WILD-TYPE" "AMP PEAK 16(18Q11.2) WILD-TYPE" 
                    TCGA-HZ-A49H                     TCGA-HZ-A4BH 
"AMP PEAK 16(18Q11.2) WILD-TYPE" "AMP PEAK 16(18Q11.2) WILD-TYPE" 
                    TCGA-HZ-A4BK                     TCGA-IB-7644 
  "AMP PEAK 16(18Q11.2) MUTATED"   "AMP PEAK 16(18Q11.2) MUTATED" 
                    TCGA-IB-7645                     TCGA-IB-7646 
"AMP PEAK 16(18Q11.2) WILD-TYPE" "AMP PEAK 16(18Q11.2) WILD-TYPE" 
                    TCGA-IB-7647                     TCGA-IB-7649 
"AMP PEAK 16(18Q11.2) WILD-TYPE"   "AMP PEAK 16(18Q11.2) MUTATED" 
                    TCGA-IB-7651                     TCGA-IB-7652 
"AMP PEAK 16(18Q11.2) WILD-TYPE" "AMP PEAK 16(18Q11.2) WILD-TYPE" 
                    TCGA-IB-7885                     TCGA-IB-7886 
"AMP PEAK 16(18Q11.2) WILD-TYPE"   "AMP PEAK 16(18Q11.2) MUTATED" 
                    TCGA-IB-7887                     TCGA-IB-7888 
"AMP PEAK 16(18Q11.2) WILD-TYPE" "AMP PEAK 16(18Q11.2) WILD-TYPE" 
                    TCGA-IB-7889                     TCGA-IB-7890 
"AMP PEAK 16(18Q11.2) WILD-TYPE" "AMP PEAK 16(18Q11.2) WILD-TYPE" 
                    TCGA-IB-7891                     TCGA-IB-7893 
"AMP PEAK 16(18Q11.2) WILD-TYPE"   "AMP PEAK 16(18Q11.2) MUTATED" 
                    TCGA-IB-7897                     TCGA-IB-8126 
"AMP PEAK 16(18Q11.2) WILD-TYPE"   "AMP PEAK 16(18Q11.2) MUTATED" 
                    TCGA-IB-8127                     TCGA-IB-A5SO 
  "AMP PEAK 16(18Q11.2) MUTATED"   "AMP PEAK 16(18Q11.2) MUTATED" 
                    TCGA-IB-A5SP                     TCGA-IB-A5SQ 
  "AMP PEAK 16(18Q11.2) MUTATED" "AMP PEAK 16(18Q11.2) WILD-TYPE" 
                    TCGA-IB-A5SS                     TCGA-IB-A5ST 
"AMP PEAK 16(18Q11.2) WILD-TYPE" "AMP PEAK 16(18Q11.2) WILD-TYPE" 
[1] "hr=" "1.1"
D14V2, continuous
                                vv
clus                             STAGE IA STAGE IB STAGE IIA STAGE IIB
  AMP PEAK 16(18Q11.2) MUTATED          0        0         2        11
  AMP PEAK 16(18Q11.2) WILD-TYPE        2        3         5        30
                                vv
clus                             STAGE III STAGE IV
  AMP PEAK 16(18Q11.2) MUTATED           1        2
  AMP PEAK 16(18Q11.2) WILD-TYPE         1        0
D14V3, multiclass
                                vv
clus                             T1+T2 T3+T4
  AMP PEAK 16(18Q11.2) MUTATED       0    16
  AMP PEAK 16(18Q11.2) WILD-TYPE     6    35
D14V4, multiclass
       clus
vv      AMP PEAK 16(18Q11.2) MUTATED AMP PEAK 16(18Q11.2) WILD-TYPE
  T1+T2                            0                              6
  T3+T4                           16                             35
D14V5, binary
                                cls
clus                              0  1
  AMP PEAK 16(18Q11.2) MUTATED    3 13
  AMP PEAK 16(18Q11.2) WILD-TYPE 11 30
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 16(18Q11.2) MUTATED      3   13
  AMP PEAK 16(18Q11.2) WILD-TYPE   11   30
   clus
vv  AMP PEAK 16(18Q11.2) MUTATED AMP PEAK 16(18Q11.2) WILD-TYPE
  0                            3                             11
  1                           13                             30
                                vv
clus                             M0 M1 MX
  AMP PEAK 16(18Q11.2) MUTATED   12  2  2
  AMP PEAK 16(18Q11.2) WILD-TYPE 20  0 21
D14V6, multiclass
    clus
vv   AMP PEAK 16(18Q11.2) MUTATED AMP PEAK 16(18Q11.2) WILD-TYPE
  M0                           12                             20
  M1                            2                              0
  MX                            2                             21
D14V7, binary
                                cls
clus                              0  1
  AMP PEAK 16(18Q11.2) MUTATED    8  8
  AMP PEAK 16(18Q11.2) WILD-TYPE 23 18
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 16(18Q11.2) MUTATED      8    8
  AMP PEAK 16(18Q11.2) WILD-TYPE   23   18
        clus
vv       AMP PEAK 16(18Q11.2) MUTATED AMP PEAK 16(18Q11.2) WILD-TYPE
  FEMALE                            8                             23
  MALE                              8                             18
                                vv
clus                             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  AMP PEAK 16(18Q11.2) MUTATED                                    14
  AMP PEAK 16(18Q11.2) WILD-TYPE                                  37
                                vv
clus                             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  AMP PEAK 16(18Q11.2) MUTATED                                       1
  AMP PEAK 16(18Q11.2) WILD-TYPE                                     3
                                vv
clus                             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  AMP PEAK 16(18Q11.2) MUTATED                                                  0
  AMP PEAK 16(18Q11.2) WILD-TYPE                                                1
D14V8, multiclass
                                                  clus
vv                                                 AMP PEAK 16(18Q11.2) MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                        14
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                       1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                            0
                                                  clus
vv                                                 AMP PEAK 16(18Q11.2) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                          37
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                         3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                              1
D14V9, continuous
D14V10, continuous
                                vv
clus                             R0 R1 RX
  AMP PEAK 16(18Q11.2) MUTATED    5 10  0
  AMP PEAK 16(18Q11.2) WILD-TYPE 27 11  2
D14V11, multiclass
    clus
vv   AMP PEAK 16(18Q11.2) MUTATED AMP PEAK 16(18Q11.2) WILD-TYPE
  R0                            5                             27
  R1                           10                             11
  RX                            0                              2
D14V12, continuous

Clustering(15) Variable = AMP PEAK 17(19Q13.2) MUTATION ANALYSIS
D15V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 17(19Q13.2) MUTATED    9  3
  AMP PEAK 17(19Q13.2) WILD-TYPE 26 16
  AMP PEAK 17(19Q13.2) MUTATED AMP PEAK 17(19Q13.2) WILD-TYPE 
                            12                             42 
  AMP PEAK 17(19Q13.2) MUTATED AMP PEAK 17(19Q13.2) WILD-TYPE 
                             3                             16 
$`AMP PEAK 17(19Q13.2) MUTATED`
TCGA-FB-A545 TCGA-H6-8124 TCGA-HZ-7918 TCGA-HZ-7922 TCGA-HZ-8001 TCGA-HZ-A4BH 
        0.03        12.89         0.92         0.13         0.62         5.98 
TCGA-IB-7886 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-8127 TCGA-IB-A5SP TCGA-IB-A5SS 
        4.04        16.04         3.85        17.13         9.83        15.12 

$`AMP PEAK 17(19Q13.2) WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.96        11.84         7.07         5.03         5.19 
TCGA-FB-A4P5 TCGA-H6-A45N TCGA-HZ-7289 TCGA-HZ-7919 TCGA-HZ-7923 TCGA-HZ-7924 
        0.13         7.63         7.86         0.66         0.26        12.13 
TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 
       12.03         0.26         0.99         0.69         3.91         0.92 
TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H 
        0.49         0.10         0.16         2.96         0.76         1.02 
TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 
        1.51        11.41        49.38         4.77        21.86        15.35 
TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 
       19.82        15.65        27.98         3.58        43.79        15.78 
TCGA-IB-7890 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-A5SO TCGA-IB-A5SQ TCGA-IB-A5ST 
       19.66        15.95         0.56        10.82         7.20         0.26 

  AMP PEAK 17(19Q13.2) MUTATED AMP PEAK 17(19Q13.2) WILD-TYPE 
                          0.03                           0.10 
  AMP PEAK 17(19Q13.2) MUTATED AMP PEAK 17(19Q13.2) WILD-TYPE 
                         17.13                          49.38 
  AMP PEAK 17(19Q13.2) MUTATED AMP PEAK 17(19Q13.2) WILD-TYPE 
                          5.01                           6.13 
[1] "0.0 - 17.1 (5.0)" "0.1 - 49.4 (6.1)"
                    TCGA-F2-6879                     TCGA-F2-6880 
"AMP PEAK 17(19Q13.2) WILD-TYPE" "AMP PEAK 17(19Q13.2) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"AMP PEAK 17(19Q13.2) WILD-TYPE" "AMP PEAK 17(19Q13.2) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
"AMP PEAK 17(19Q13.2) WILD-TYPE" "AMP PEAK 17(19Q13.2) WILD-TYPE" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"AMP PEAK 17(19Q13.2) WILD-TYPE"   "AMP PEAK 17(19Q13.2) MUTATED" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
  "AMP PEAK 17(19Q13.2) MUTATED" "AMP PEAK 17(19Q13.2) WILD-TYPE" 
                    TCGA-HZ-7289                     TCGA-HZ-7918 
"AMP PEAK 17(19Q13.2) WILD-TYPE"   "AMP PEAK 17(19Q13.2) MUTATED" 
                    TCGA-HZ-7919                     TCGA-HZ-7922 
"AMP PEAK 17(19Q13.2) WILD-TYPE"   "AMP PEAK 17(19Q13.2) MUTATED" 
                    TCGA-HZ-7923                     TCGA-HZ-7924 
"AMP PEAK 17(19Q13.2) WILD-TYPE" "AMP PEAK 17(19Q13.2) WILD-TYPE" 
                    TCGA-HZ-7925                     TCGA-HZ-7926 
"AMP PEAK 17(19Q13.2) WILD-TYPE" "AMP PEAK 17(19Q13.2) WILD-TYPE" 
                    TCGA-HZ-8001                     TCGA-HZ-8002 
  "AMP PEAK 17(19Q13.2) MUTATED" "AMP PEAK 17(19Q13.2) WILD-TYPE" 
                    TCGA-HZ-8003                     TCGA-HZ-8005 
"AMP PEAK 17(19Q13.2) WILD-TYPE" "AMP PEAK 17(19Q13.2) WILD-TYPE" 
                    TCGA-HZ-8315                     TCGA-HZ-8317 
"AMP PEAK 17(19Q13.2) WILD-TYPE" "AMP PEAK 17(19Q13.2) WILD-TYPE" 
                    TCGA-HZ-8519                     TCGA-HZ-8636 
"AMP PEAK 17(19Q13.2) WILD-TYPE" "AMP PEAK 17(19Q13.2) WILD-TYPE" 
                    TCGA-HZ-8638                     TCGA-HZ-A49G 
"AMP PEAK 17(19Q13.2) WILD-TYPE" "AMP PEAK 17(19Q13.2) WILD-TYPE" 
                    TCGA-HZ-A49H                     TCGA-HZ-A4BH 
"AMP PEAK 17(19Q13.2) WILD-TYPE"   "AMP PEAK 17(19Q13.2) MUTATED" 
                    TCGA-HZ-A4BK                     TCGA-IB-7644 
"AMP PEAK 17(19Q13.2) WILD-TYPE" "AMP PEAK 17(19Q13.2) WILD-TYPE" 
                    TCGA-IB-7645                     TCGA-IB-7646 
"AMP PEAK 17(19Q13.2) WILD-TYPE" "AMP PEAK 17(19Q13.2) WILD-TYPE" 
                    TCGA-IB-7647                     TCGA-IB-7649 
"AMP PEAK 17(19Q13.2) WILD-TYPE" "AMP PEAK 17(19Q13.2) WILD-TYPE" 
                    TCGA-IB-7651                     TCGA-IB-7652 
"AMP PEAK 17(19Q13.2) WILD-TYPE" "AMP PEAK 17(19Q13.2) WILD-TYPE" 
                    TCGA-IB-7885                     TCGA-IB-7886 
"AMP PEAK 17(19Q13.2) WILD-TYPE"   "AMP PEAK 17(19Q13.2) MUTATED" 
                    TCGA-IB-7887                     TCGA-IB-7888 
"AMP PEAK 17(19Q13.2) WILD-TYPE" "AMP PEAK 17(19Q13.2) WILD-TYPE" 
                    TCGA-IB-7889                     TCGA-IB-7890 
"AMP PEAK 17(19Q13.2) WILD-TYPE" "AMP PEAK 17(19Q13.2) WILD-TYPE" 
                    TCGA-IB-7891                     TCGA-IB-7893 
  "AMP PEAK 17(19Q13.2) MUTATED"   "AMP PEAK 17(19Q13.2) MUTATED" 
                    TCGA-IB-7897                     TCGA-IB-8126 
"AMP PEAK 17(19Q13.2) WILD-TYPE" "AMP PEAK 17(19Q13.2) WILD-TYPE" 
                    TCGA-IB-8127                     TCGA-IB-A5SO 
  "AMP PEAK 17(19Q13.2) MUTATED" "AMP PEAK 17(19Q13.2) WILD-TYPE" 
                    TCGA-IB-A5SP                     TCGA-IB-A5SQ 
  "AMP PEAK 17(19Q13.2) MUTATED" "AMP PEAK 17(19Q13.2) WILD-TYPE" 
                    TCGA-IB-A5SS                     TCGA-IB-A5ST 
  "AMP PEAK 17(19Q13.2) MUTATED" "AMP PEAK 17(19Q13.2) WILD-TYPE" 
                    TCGA-F2-6879                     TCGA-F2-6880 
"AMP PEAK 17(19Q13.2) WILD-TYPE" "AMP PEAK 17(19Q13.2) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"AMP PEAK 17(19Q13.2) WILD-TYPE" "AMP PEAK 17(19Q13.2) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
"AMP PEAK 17(19Q13.2) WILD-TYPE" "AMP PEAK 17(19Q13.2) WILD-TYPE" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"AMP PEAK 17(19Q13.2) WILD-TYPE"   "AMP PEAK 17(19Q13.2) MUTATED" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
  "AMP PEAK 17(19Q13.2) MUTATED" "AMP PEAK 17(19Q13.2) WILD-TYPE" 
                    TCGA-HZ-7289                     TCGA-HZ-7918 
"AMP PEAK 17(19Q13.2) WILD-TYPE"   "AMP PEAK 17(19Q13.2) MUTATED" 
                    TCGA-HZ-7919                     TCGA-HZ-7922 
"AMP PEAK 17(19Q13.2) WILD-TYPE"   "AMP PEAK 17(19Q13.2) MUTATED" 
                    TCGA-HZ-7923                     TCGA-HZ-7924 
"AMP PEAK 17(19Q13.2) WILD-TYPE" "AMP PEAK 17(19Q13.2) WILD-TYPE" 
                    TCGA-HZ-7925                     TCGA-HZ-7926 
"AMP PEAK 17(19Q13.2) WILD-TYPE" "AMP PEAK 17(19Q13.2) WILD-TYPE" 
                    TCGA-HZ-8001                     TCGA-HZ-8002 
  "AMP PEAK 17(19Q13.2) MUTATED" "AMP PEAK 17(19Q13.2) WILD-TYPE" 
                    TCGA-HZ-8003                     TCGA-HZ-8005 
"AMP PEAK 17(19Q13.2) WILD-TYPE" "AMP PEAK 17(19Q13.2) WILD-TYPE" 
                    TCGA-HZ-8315                     TCGA-HZ-8317 
"AMP PEAK 17(19Q13.2) WILD-TYPE" "AMP PEAK 17(19Q13.2) WILD-TYPE" 
                    TCGA-HZ-8519                     TCGA-HZ-8636 
"AMP PEAK 17(19Q13.2) WILD-TYPE" "AMP PEAK 17(19Q13.2) WILD-TYPE" 
                    TCGA-HZ-8638                     TCGA-HZ-A49G 
"AMP PEAK 17(19Q13.2) WILD-TYPE" "AMP PEAK 17(19Q13.2) WILD-TYPE" 
                    TCGA-HZ-A49H                     TCGA-HZ-A4BH 
"AMP PEAK 17(19Q13.2) WILD-TYPE"   "AMP PEAK 17(19Q13.2) MUTATED" 
                    TCGA-HZ-A4BK                     TCGA-IB-7644 
"AMP PEAK 17(19Q13.2) WILD-TYPE" "AMP PEAK 17(19Q13.2) WILD-TYPE" 
                    TCGA-IB-7645                     TCGA-IB-7646 
"AMP PEAK 17(19Q13.2) WILD-TYPE" "AMP PEAK 17(19Q13.2) WILD-TYPE" 
                    TCGA-IB-7647                     TCGA-IB-7649 
"AMP PEAK 17(19Q13.2) WILD-TYPE" "AMP PEAK 17(19Q13.2) WILD-TYPE" 
                    TCGA-IB-7651                     TCGA-IB-7652 
"AMP PEAK 17(19Q13.2) WILD-TYPE" "AMP PEAK 17(19Q13.2) WILD-TYPE" 
                    TCGA-IB-7885                     TCGA-IB-7886 
"AMP PEAK 17(19Q13.2) WILD-TYPE"   "AMP PEAK 17(19Q13.2) MUTATED" 
                    TCGA-IB-7887                     TCGA-IB-7888 
"AMP PEAK 17(19Q13.2) WILD-TYPE" "AMP PEAK 17(19Q13.2) WILD-TYPE" 
                    TCGA-IB-7889                     TCGA-IB-7890 
"AMP PEAK 17(19Q13.2) WILD-TYPE" "AMP PEAK 17(19Q13.2) WILD-TYPE" 
                    TCGA-IB-7891                     TCGA-IB-7893 
  "AMP PEAK 17(19Q13.2) MUTATED"   "AMP PEAK 17(19Q13.2) MUTATED" 
                    TCGA-IB-7897                     TCGA-IB-8126 
"AMP PEAK 17(19Q13.2) WILD-TYPE" "AMP PEAK 17(19Q13.2) WILD-TYPE" 
                    TCGA-IB-8127                     TCGA-IB-A5SO 
  "AMP PEAK 17(19Q13.2) MUTATED" "AMP PEAK 17(19Q13.2) WILD-TYPE" 
                    TCGA-IB-A5SP                     TCGA-IB-A5SQ 
  "AMP PEAK 17(19Q13.2) MUTATED" "AMP PEAK 17(19Q13.2) WILD-TYPE" 
                    TCGA-IB-A5SS                     TCGA-IB-A5ST 
  "AMP PEAK 17(19Q13.2) MUTATED" "AMP PEAK 17(19Q13.2) WILD-TYPE" 
                    TCGA-F2-6879                     TCGA-F2-6880 
"AMP PEAK 17(19Q13.2) WILD-TYPE" "AMP PEAK 17(19Q13.2) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"AMP PEAK 17(19Q13.2) WILD-TYPE" "AMP PEAK 17(19Q13.2) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
"AMP PEAK 17(19Q13.2) WILD-TYPE" "AMP PEAK 17(19Q13.2) WILD-TYPE" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"AMP PEAK 17(19Q13.2) WILD-TYPE"   "AMP PEAK 17(19Q13.2) MUTATED" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
  "AMP PEAK 17(19Q13.2) MUTATED" "AMP PEAK 17(19Q13.2) WILD-TYPE" 
                    TCGA-HZ-7289                     TCGA-HZ-7918 
"AMP PEAK 17(19Q13.2) WILD-TYPE"   "AMP PEAK 17(19Q13.2) MUTATED" 
                    TCGA-HZ-7919                     TCGA-HZ-7922 
"AMP PEAK 17(19Q13.2) WILD-TYPE"   "AMP PEAK 17(19Q13.2) MUTATED" 
                    TCGA-HZ-7923                     TCGA-HZ-7924 
"AMP PEAK 17(19Q13.2) WILD-TYPE" "AMP PEAK 17(19Q13.2) WILD-TYPE" 
                    TCGA-HZ-7925                     TCGA-HZ-7926 
"AMP PEAK 17(19Q13.2) WILD-TYPE" "AMP PEAK 17(19Q13.2) WILD-TYPE" 
                    TCGA-HZ-8001                     TCGA-HZ-8002 
  "AMP PEAK 17(19Q13.2) MUTATED" "AMP PEAK 17(19Q13.2) WILD-TYPE" 
                    TCGA-HZ-8003                     TCGA-HZ-8005 
"AMP PEAK 17(19Q13.2) WILD-TYPE" "AMP PEAK 17(19Q13.2) WILD-TYPE" 
                    TCGA-HZ-8315                     TCGA-HZ-8317 
"AMP PEAK 17(19Q13.2) WILD-TYPE" "AMP PEAK 17(19Q13.2) WILD-TYPE" 
                    TCGA-HZ-8519                     TCGA-HZ-8636 
"AMP PEAK 17(19Q13.2) WILD-TYPE" "AMP PEAK 17(19Q13.2) WILD-TYPE" 
                    TCGA-HZ-8638                     TCGA-HZ-A49G 
"AMP PEAK 17(19Q13.2) WILD-TYPE" "AMP PEAK 17(19Q13.2) WILD-TYPE" 
                    TCGA-HZ-A49H                     TCGA-HZ-A4BH 
"AMP PEAK 17(19Q13.2) WILD-TYPE"   "AMP PEAK 17(19Q13.2) MUTATED" 
                    TCGA-HZ-A4BK                     TCGA-IB-7644 
"AMP PEAK 17(19Q13.2) WILD-TYPE" "AMP PEAK 17(19Q13.2) WILD-TYPE" 
                    TCGA-IB-7645                     TCGA-IB-7646 
"AMP PEAK 17(19Q13.2) WILD-TYPE" "AMP PEAK 17(19Q13.2) WILD-TYPE" 
                    TCGA-IB-7647                     TCGA-IB-7649 
"AMP PEAK 17(19Q13.2) WILD-TYPE" "AMP PEAK 17(19Q13.2) WILD-TYPE" 
                    TCGA-IB-7651                     TCGA-IB-7652 
"AMP PEAK 17(19Q13.2) WILD-TYPE" "AMP PEAK 17(19Q13.2) WILD-TYPE" 
                    TCGA-IB-7885                     TCGA-IB-7886 
"AMP PEAK 17(19Q13.2) WILD-TYPE"   "AMP PEAK 17(19Q13.2) MUTATED" 
                    TCGA-IB-7887                     TCGA-IB-7888 
"AMP PEAK 17(19Q13.2) WILD-TYPE" "AMP PEAK 17(19Q13.2) WILD-TYPE" 
                    TCGA-IB-7889                     TCGA-IB-7890 
"AMP PEAK 17(19Q13.2) WILD-TYPE" "AMP PEAK 17(19Q13.2) WILD-TYPE" 
                    TCGA-IB-7891                     TCGA-IB-7893 
  "AMP PEAK 17(19Q13.2) MUTATED"   "AMP PEAK 17(19Q13.2) MUTATED" 
                    TCGA-IB-7897                     TCGA-IB-8126 
"AMP PEAK 17(19Q13.2) WILD-TYPE" "AMP PEAK 17(19Q13.2) WILD-TYPE" 
                    TCGA-IB-8127                     TCGA-IB-A5SO 
  "AMP PEAK 17(19Q13.2) MUTATED" "AMP PEAK 17(19Q13.2) WILD-TYPE" 
                    TCGA-IB-A5SP                     TCGA-IB-A5SQ 
  "AMP PEAK 17(19Q13.2) MUTATED" "AMP PEAK 17(19Q13.2) WILD-TYPE" 
                    TCGA-IB-A5SS                     TCGA-IB-A5ST 
  "AMP PEAK 17(19Q13.2) MUTATED" "AMP PEAK 17(19Q13.2) WILD-TYPE" 
[1] "hr=" "1"  
D15V2, continuous
                                vv
clus                             STAGE IA STAGE IB STAGE IIA STAGE IIB
  AMP PEAK 17(19Q13.2) MUTATED          0        0         2        10
  AMP PEAK 17(19Q13.2) WILD-TYPE        2        3         5        31
                                vv
clus                             STAGE III STAGE IV
  AMP PEAK 17(19Q13.2) MUTATED           1        0
  AMP PEAK 17(19Q13.2) WILD-TYPE         1        2
D15V3, multiclass
                                vv
clus                             T1+T2 T3+T4
  AMP PEAK 17(19Q13.2) MUTATED       0    13
  AMP PEAK 17(19Q13.2) WILD-TYPE     6    38
D15V4, multiclass
       clus
vv      AMP PEAK 17(19Q13.2) MUTATED AMP PEAK 17(19Q13.2) WILD-TYPE
  T1+T2                            0                              6
  T3+T4                           13                             38
D15V5, binary
                                cls
clus                              0  1
  AMP PEAK 17(19Q13.2) MUTATED    3 10
  AMP PEAK 17(19Q13.2) WILD-TYPE 11 33
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 17(19Q13.2) MUTATED      3   10
  AMP PEAK 17(19Q13.2) WILD-TYPE   11   33
   clus
vv  AMP PEAK 17(19Q13.2) MUTATED AMP PEAK 17(19Q13.2) WILD-TYPE
  0                            3                             11
  1                           10                             33
                                vv
clus                             M0 M1 MX
  AMP PEAK 17(19Q13.2) MUTATED    9  0  4
  AMP PEAK 17(19Q13.2) WILD-TYPE 23  2 19
D15V6, multiclass
    clus
vv   AMP PEAK 17(19Q13.2) MUTATED AMP PEAK 17(19Q13.2) WILD-TYPE
  M0                            9                             23
  M1                            0                              2
  MX                            4                             19
D15V7, binary
                                cls
clus                              0  1
  AMP PEAK 17(19Q13.2) MUTATED    4  9
  AMP PEAK 17(19Q13.2) WILD-TYPE 27 17
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 17(19Q13.2) MUTATED      4    9
  AMP PEAK 17(19Q13.2) WILD-TYPE   27   17
        clus
vv       AMP PEAK 17(19Q13.2) MUTATED AMP PEAK 17(19Q13.2) WILD-TYPE
  FEMALE                            4                             27
  MALE                              9                             17
                                vv
clus                             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  AMP PEAK 17(19Q13.2) MUTATED                                    13
  AMP PEAK 17(19Q13.2) WILD-TYPE                                  38
                                vv
clus                             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  AMP PEAK 17(19Q13.2) MUTATED                                       0
  AMP PEAK 17(19Q13.2) WILD-TYPE                                     4
                                vv
clus                             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  AMP PEAK 17(19Q13.2) MUTATED                                                  0
  AMP PEAK 17(19Q13.2) WILD-TYPE                                                1
D15V8, multiclass
                                                  clus
vv                                                 AMP PEAK 17(19Q13.2) MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                        13
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                       0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                            0
                                                  clus
vv                                                 AMP PEAK 17(19Q13.2) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                          38
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                         4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                              1
D15V9, continuous
D15V10, continuous
                                vv
clus                             R0 R1 RX
  AMP PEAK 17(19Q13.2) MUTATED    7  5  0
  AMP PEAK 17(19Q13.2) WILD-TYPE 25 16  2
D15V11, multiclass
    clus
vv   AMP PEAK 17(19Q13.2) MUTATED AMP PEAK 17(19Q13.2) WILD-TYPE
  R0                            7                             25
  R1                            5                             16
  RX                            0                              2
D15V12, continuous

Clustering(16) Variable = AMP PEAK 18(20Q13.2) MUTATION ANALYSIS
D16V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 18(20Q13.2) MUTATED    7  6
  AMP PEAK 18(20Q13.2) WILD-TYPE 28 13
  AMP PEAK 18(20Q13.2) MUTATED AMP PEAK 18(20Q13.2) WILD-TYPE 
                            13                             41 
  AMP PEAK 18(20Q13.2) MUTATED AMP PEAK 18(20Q13.2) WILD-TYPE 
                             6                             13 
$`AMP PEAK 18(20Q13.2) MUTATED`
TCGA-F2-6879 TCGA-FB-A545 TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7922 TCGA-HZ-8005 
       10.98         0.03         7.86         0.92         0.13         3.91 
TCGA-HZ-A4BK TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7886 TCGA-IB-7890 TCGA-IB-8127 
        1.51         4.77        21.86         4.04        19.66        17.13 
TCGA-IB-A5SP 
        9.83 

$`AMP PEAK 18(20Q13.2) WILD-TYPE`
TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A4P5 
        9.96        11.84         7.07         5.03         5.19         0.13 
TCGA-H6-8124 TCGA-H6-A45N TCGA-HZ-7919 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
       12.89         7.63         0.66         0.26        12.13        12.03 
TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8315 TCGA-HZ-8317 
        0.26         0.62         0.99         0.69         0.92         0.49 
TCGA-HZ-8519 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH 
        0.10         0.16         2.96         0.76         1.02         5.98 
TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 
       11.41        49.38        15.35        19.82        15.65        27.98 
TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 
        3.58        43.79        15.78        16.04         3.85        15.95 
TCGA-IB-8126 TCGA-IB-A5SO TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST 
        0.56        10.82         7.20        15.12         0.26 

  AMP PEAK 18(20Q13.2) MUTATED AMP PEAK 18(20Q13.2) WILD-TYPE 
                          0.03                           0.10 
  AMP PEAK 18(20Q13.2) MUTATED AMP PEAK 18(20Q13.2) WILD-TYPE 
                         21.86                          49.38 
  AMP PEAK 18(20Q13.2) MUTATED AMP PEAK 18(20Q13.2) WILD-TYPE 
                          4.77                           5.98 
[1] "0.0 - 21.9 (4.8)" "0.1 - 49.4 (6.0)"
                    TCGA-F2-6879                     TCGA-F2-6880 
  "AMP PEAK 18(20Q13.2) MUTATED" "AMP PEAK 18(20Q13.2) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"AMP PEAK 18(20Q13.2) WILD-TYPE" "AMP PEAK 18(20Q13.2) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
"AMP PEAK 18(20Q13.2) WILD-TYPE" "AMP PEAK 18(20Q13.2) WILD-TYPE" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"AMP PEAK 18(20Q13.2) WILD-TYPE"   "AMP PEAK 18(20Q13.2) MUTATED" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
"AMP PEAK 18(20Q13.2) WILD-TYPE" "AMP PEAK 18(20Q13.2) WILD-TYPE" 
                    TCGA-HZ-7289                     TCGA-HZ-7918 
  "AMP PEAK 18(20Q13.2) MUTATED"   "AMP PEAK 18(20Q13.2) MUTATED" 
                    TCGA-HZ-7919                     TCGA-HZ-7922 
"AMP PEAK 18(20Q13.2) WILD-TYPE"   "AMP PEAK 18(20Q13.2) MUTATED" 
                    TCGA-HZ-7923                     TCGA-HZ-7924 
"AMP PEAK 18(20Q13.2) WILD-TYPE" "AMP PEAK 18(20Q13.2) WILD-TYPE" 
                    TCGA-HZ-7925                     TCGA-HZ-7926 
"AMP PEAK 18(20Q13.2) WILD-TYPE" "AMP PEAK 18(20Q13.2) WILD-TYPE" 
                    TCGA-HZ-8001                     TCGA-HZ-8002 
"AMP PEAK 18(20Q13.2) WILD-TYPE" "AMP PEAK 18(20Q13.2) WILD-TYPE" 
                    TCGA-HZ-8003                     TCGA-HZ-8005 
"AMP PEAK 18(20Q13.2) WILD-TYPE"   "AMP PEAK 18(20Q13.2) MUTATED" 
                    TCGA-HZ-8315                     TCGA-HZ-8317 
"AMP PEAK 18(20Q13.2) WILD-TYPE" "AMP PEAK 18(20Q13.2) WILD-TYPE" 
                    TCGA-HZ-8519                     TCGA-HZ-8636 
"AMP PEAK 18(20Q13.2) WILD-TYPE" "AMP PEAK 18(20Q13.2) WILD-TYPE" 
                    TCGA-HZ-8638                     TCGA-HZ-A49G 
"AMP PEAK 18(20Q13.2) WILD-TYPE" "AMP PEAK 18(20Q13.2) WILD-TYPE" 
                    TCGA-HZ-A49H                     TCGA-HZ-A4BH 
"AMP PEAK 18(20Q13.2) WILD-TYPE" "AMP PEAK 18(20Q13.2) WILD-TYPE" 
                    TCGA-HZ-A4BK                     TCGA-IB-7644 
  "AMP PEAK 18(20Q13.2) MUTATED" "AMP PEAK 18(20Q13.2) WILD-TYPE" 
                    TCGA-IB-7645                     TCGA-IB-7646 
"AMP PEAK 18(20Q13.2) WILD-TYPE"   "AMP PEAK 18(20Q13.2) MUTATED" 
                    TCGA-IB-7647                     TCGA-IB-7649 
  "AMP PEAK 18(20Q13.2) MUTATED" "AMP PEAK 18(20Q13.2) WILD-TYPE" 
                    TCGA-IB-7651                     TCGA-IB-7652 
"AMP PEAK 18(20Q13.2) WILD-TYPE" "AMP PEAK 18(20Q13.2) WILD-TYPE" 
                    TCGA-IB-7885                     TCGA-IB-7886 
"AMP PEAK 18(20Q13.2) WILD-TYPE"   "AMP PEAK 18(20Q13.2) MUTATED" 
                    TCGA-IB-7887                     TCGA-IB-7888 
"AMP PEAK 18(20Q13.2) WILD-TYPE" "AMP PEAK 18(20Q13.2) WILD-TYPE" 
                    TCGA-IB-7889                     TCGA-IB-7890 
"AMP PEAK 18(20Q13.2) WILD-TYPE"   "AMP PEAK 18(20Q13.2) MUTATED" 
                    TCGA-IB-7891                     TCGA-IB-7893 
"AMP PEAK 18(20Q13.2) WILD-TYPE" "AMP PEAK 18(20Q13.2) WILD-TYPE" 
                    TCGA-IB-7897                     TCGA-IB-8126 
"AMP PEAK 18(20Q13.2) WILD-TYPE" "AMP PEAK 18(20Q13.2) WILD-TYPE" 
                    TCGA-IB-8127                     TCGA-IB-A5SO 
  "AMP PEAK 18(20Q13.2) MUTATED" "AMP PEAK 18(20Q13.2) WILD-TYPE" 
                    TCGA-IB-A5SP                     TCGA-IB-A5SQ 
  "AMP PEAK 18(20Q13.2) MUTATED" "AMP PEAK 18(20Q13.2) WILD-TYPE" 
                    TCGA-IB-A5SS                     TCGA-IB-A5ST 
"AMP PEAK 18(20Q13.2) WILD-TYPE" "AMP PEAK 18(20Q13.2) WILD-TYPE" 
                    TCGA-F2-6879                     TCGA-F2-6880 
  "AMP PEAK 18(20Q13.2) MUTATED" "AMP PEAK 18(20Q13.2) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"AMP PEAK 18(20Q13.2) WILD-TYPE" "AMP PEAK 18(20Q13.2) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
"AMP PEAK 18(20Q13.2) WILD-TYPE" "AMP PEAK 18(20Q13.2) WILD-TYPE" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"AMP PEAK 18(20Q13.2) WILD-TYPE"   "AMP PEAK 18(20Q13.2) MUTATED" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
"AMP PEAK 18(20Q13.2) WILD-TYPE" "AMP PEAK 18(20Q13.2) WILD-TYPE" 
                    TCGA-HZ-7289                     TCGA-HZ-7918 
  "AMP PEAK 18(20Q13.2) MUTATED"   "AMP PEAK 18(20Q13.2) MUTATED" 
                    TCGA-HZ-7919                     TCGA-HZ-7922 
"AMP PEAK 18(20Q13.2) WILD-TYPE"   "AMP PEAK 18(20Q13.2) MUTATED" 
                    TCGA-HZ-7923                     TCGA-HZ-7924 
"AMP PEAK 18(20Q13.2) WILD-TYPE" "AMP PEAK 18(20Q13.2) WILD-TYPE" 
                    TCGA-HZ-7925                     TCGA-HZ-7926 
"AMP PEAK 18(20Q13.2) WILD-TYPE" "AMP PEAK 18(20Q13.2) WILD-TYPE" 
                    TCGA-HZ-8001                     TCGA-HZ-8002 
"AMP PEAK 18(20Q13.2) WILD-TYPE" "AMP PEAK 18(20Q13.2) WILD-TYPE" 
                    TCGA-HZ-8003                     TCGA-HZ-8005 
"AMP PEAK 18(20Q13.2) WILD-TYPE"   "AMP PEAK 18(20Q13.2) MUTATED" 
                    TCGA-HZ-8315                     TCGA-HZ-8317 
"AMP PEAK 18(20Q13.2) WILD-TYPE" "AMP PEAK 18(20Q13.2) WILD-TYPE" 
                    TCGA-HZ-8519                     TCGA-HZ-8636 
"AMP PEAK 18(20Q13.2) WILD-TYPE" "AMP PEAK 18(20Q13.2) WILD-TYPE" 
                    TCGA-HZ-8638                     TCGA-HZ-A49G 
"AMP PEAK 18(20Q13.2) WILD-TYPE" "AMP PEAK 18(20Q13.2) WILD-TYPE" 
                    TCGA-HZ-A49H                     TCGA-HZ-A4BH 
"AMP PEAK 18(20Q13.2) WILD-TYPE" "AMP PEAK 18(20Q13.2) WILD-TYPE" 
                    TCGA-HZ-A4BK                     TCGA-IB-7644 
  "AMP PEAK 18(20Q13.2) MUTATED" "AMP PEAK 18(20Q13.2) WILD-TYPE" 
                    TCGA-IB-7645                     TCGA-IB-7646 
"AMP PEAK 18(20Q13.2) WILD-TYPE"   "AMP PEAK 18(20Q13.2) MUTATED" 
                    TCGA-IB-7647                     TCGA-IB-7649 
  "AMP PEAK 18(20Q13.2) MUTATED" "AMP PEAK 18(20Q13.2) WILD-TYPE" 
                    TCGA-IB-7651                     TCGA-IB-7652 
"AMP PEAK 18(20Q13.2) WILD-TYPE" "AMP PEAK 18(20Q13.2) WILD-TYPE" 
                    TCGA-IB-7885                     TCGA-IB-7886 
"AMP PEAK 18(20Q13.2) WILD-TYPE"   "AMP PEAK 18(20Q13.2) MUTATED" 
                    TCGA-IB-7887                     TCGA-IB-7888 
"AMP PEAK 18(20Q13.2) WILD-TYPE" "AMP PEAK 18(20Q13.2) WILD-TYPE" 
                    TCGA-IB-7889                     TCGA-IB-7890 
"AMP PEAK 18(20Q13.2) WILD-TYPE"   "AMP PEAK 18(20Q13.2) MUTATED" 
                    TCGA-IB-7891                     TCGA-IB-7893 
"AMP PEAK 18(20Q13.2) WILD-TYPE" "AMP PEAK 18(20Q13.2) WILD-TYPE" 
                    TCGA-IB-7897                     TCGA-IB-8126 
"AMP PEAK 18(20Q13.2) WILD-TYPE" "AMP PEAK 18(20Q13.2) WILD-TYPE" 
                    TCGA-IB-8127                     TCGA-IB-A5SO 
  "AMP PEAK 18(20Q13.2) MUTATED" "AMP PEAK 18(20Q13.2) WILD-TYPE" 
                    TCGA-IB-A5SP                     TCGA-IB-A5SQ 
  "AMP PEAK 18(20Q13.2) MUTATED" "AMP PEAK 18(20Q13.2) WILD-TYPE" 
                    TCGA-IB-A5SS                     TCGA-IB-A5ST 
"AMP PEAK 18(20Q13.2) WILD-TYPE" "AMP PEAK 18(20Q13.2) WILD-TYPE" 
                    TCGA-F2-6879                     TCGA-F2-6880 
  "AMP PEAK 18(20Q13.2) MUTATED" "AMP PEAK 18(20Q13.2) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"AMP PEAK 18(20Q13.2) WILD-TYPE" "AMP PEAK 18(20Q13.2) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
"AMP PEAK 18(20Q13.2) WILD-TYPE" "AMP PEAK 18(20Q13.2) WILD-TYPE" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"AMP PEAK 18(20Q13.2) WILD-TYPE"   "AMP PEAK 18(20Q13.2) MUTATED" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
"AMP PEAK 18(20Q13.2) WILD-TYPE" "AMP PEAK 18(20Q13.2) WILD-TYPE" 
                    TCGA-HZ-7289                     TCGA-HZ-7918 
  "AMP PEAK 18(20Q13.2) MUTATED"   "AMP PEAK 18(20Q13.2) MUTATED" 
                    TCGA-HZ-7919                     TCGA-HZ-7922 
"AMP PEAK 18(20Q13.2) WILD-TYPE"   "AMP PEAK 18(20Q13.2) MUTATED" 
                    TCGA-HZ-7923                     TCGA-HZ-7924 
"AMP PEAK 18(20Q13.2) WILD-TYPE" "AMP PEAK 18(20Q13.2) WILD-TYPE" 
                    TCGA-HZ-7925                     TCGA-HZ-7926 
"AMP PEAK 18(20Q13.2) WILD-TYPE" "AMP PEAK 18(20Q13.2) WILD-TYPE" 
                    TCGA-HZ-8001                     TCGA-HZ-8002 
"AMP PEAK 18(20Q13.2) WILD-TYPE" "AMP PEAK 18(20Q13.2) WILD-TYPE" 
                    TCGA-HZ-8003                     TCGA-HZ-8005 
"AMP PEAK 18(20Q13.2) WILD-TYPE"   "AMP PEAK 18(20Q13.2) MUTATED" 
                    TCGA-HZ-8315                     TCGA-HZ-8317 
"AMP PEAK 18(20Q13.2) WILD-TYPE" "AMP PEAK 18(20Q13.2) WILD-TYPE" 
                    TCGA-HZ-8519                     TCGA-HZ-8636 
"AMP PEAK 18(20Q13.2) WILD-TYPE" "AMP PEAK 18(20Q13.2) WILD-TYPE" 
                    TCGA-HZ-8638                     TCGA-HZ-A49G 
"AMP PEAK 18(20Q13.2) WILD-TYPE" "AMP PEAK 18(20Q13.2) WILD-TYPE" 
                    TCGA-HZ-A49H                     TCGA-HZ-A4BH 
"AMP PEAK 18(20Q13.2) WILD-TYPE" "AMP PEAK 18(20Q13.2) WILD-TYPE" 
                    TCGA-HZ-A4BK                     TCGA-IB-7644 
  "AMP PEAK 18(20Q13.2) MUTATED" "AMP PEAK 18(20Q13.2) WILD-TYPE" 
                    TCGA-IB-7645                     TCGA-IB-7646 
"AMP PEAK 18(20Q13.2) WILD-TYPE"   "AMP PEAK 18(20Q13.2) MUTATED" 
                    TCGA-IB-7647                     TCGA-IB-7649 
  "AMP PEAK 18(20Q13.2) MUTATED" "AMP PEAK 18(20Q13.2) WILD-TYPE" 
                    TCGA-IB-7651                     TCGA-IB-7652 
"AMP PEAK 18(20Q13.2) WILD-TYPE" "AMP PEAK 18(20Q13.2) WILD-TYPE" 
                    TCGA-IB-7885                     TCGA-IB-7886 
"AMP PEAK 18(20Q13.2) WILD-TYPE"   "AMP PEAK 18(20Q13.2) MUTATED" 
                    TCGA-IB-7887                     TCGA-IB-7888 
"AMP PEAK 18(20Q13.2) WILD-TYPE" "AMP PEAK 18(20Q13.2) WILD-TYPE" 
                    TCGA-IB-7889                     TCGA-IB-7890 
"AMP PEAK 18(20Q13.2) WILD-TYPE"   "AMP PEAK 18(20Q13.2) MUTATED" 
                    TCGA-IB-7891                     TCGA-IB-7893 
"AMP PEAK 18(20Q13.2) WILD-TYPE" "AMP PEAK 18(20Q13.2) WILD-TYPE" 
                    TCGA-IB-7897                     TCGA-IB-8126 
"AMP PEAK 18(20Q13.2) WILD-TYPE" "AMP PEAK 18(20Q13.2) WILD-TYPE" 
                    TCGA-IB-8127                     TCGA-IB-A5SO 
  "AMP PEAK 18(20Q13.2) MUTATED" "AMP PEAK 18(20Q13.2) WILD-TYPE" 
                    TCGA-IB-A5SP                     TCGA-IB-A5SQ 
  "AMP PEAK 18(20Q13.2) MUTATED" "AMP PEAK 18(20Q13.2) WILD-TYPE" 
                    TCGA-IB-A5SS                     TCGA-IB-A5ST 
"AMP PEAK 18(20Q13.2) WILD-TYPE" "AMP PEAK 18(20Q13.2) WILD-TYPE" 
[1] "hr=" "1.6"
D16V2, continuous
                                vv
clus                             STAGE IA STAGE IB STAGE IIA STAGE IIB
  AMP PEAK 18(20Q13.2) MUTATED          0        1         1        12
  AMP PEAK 18(20Q13.2) WILD-TYPE        2        2         6        29
                                vv
clus                             STAGE III STAGE IV
  AMP PEAK 18(20Q13.2) MUTATED           0        0
  AMP PEAK 18(20Q13.2) WILD-TYPE         2        2
D16V3, multiclass
                                vv
clus                             T1+T2 T3+T4
  AMP PEAK 18(20Q13.2) MUTATED       1    13
  AMP PEAK 18(20Q13.2) WILD-TYPE     5    38
D16V4, multiclass
       clus
vv      AMP PEAK 18(20Q13.2) MUTATED AMP PEAK 18(20Q13.2) WILD-TYPE
  T1+T2                            1                              5
  T3+T4                           13                             38
D16V5, binary
                                cls
clus                              0  1
  AMP PEAK 18(20Q13.2) MUTATED    2 12
  AMP PEAK 18(20Q13.2) WILD-TYPE 12 31
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 18(20Q13.2) MUTATED      2   12
  AMP PEAK 18(20Q13.2) WILD-TYPE   12   31
   clus
vv  AMP PEAK 18(20Q13.2) MUTATED AMP PEAK 18(20Q13.2) WILD-TYPE
  0                            2                             12
  1                           12                             31
                                vv
clus                             M0 M1 MX
  AMP PEAK 18(20Q13.2) MUTATED    9  0  5
  AMP PEAK 18(20Q13.2) WILD-TYPE 23  2 18
D16V6, multiclass
    clus
vv   AMP PEAK 18(20Q13.2) MUTATED AMP PEAK 18(20Q13.2) WILD-TYPE
  M0                            9                             23
  M1                            0                              2
  MX                            5                             18
D16V7, binary
                                cls
clus                              0  1
  AMP PEAK 18(20Q13.2) MUTATED    4 10
  AMP PEAK 18(20Q13.2) WILD-TYPE 27 16
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 18(20Q13.2) MUTATED      4   10
  AMP PEAK 18(20Q13.2) WILD-TYPE   27   16
        clus
vv       AMP PEAK 18(20Q13.2) MUTATED AMP PEAK 18(20Q13.2) WILD-TYPE
  FEMALE                            4                             27
  MALE                             10                             16
                                vv
clus                             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  AMP PEAK 18(20Q13.2) MUTATED                                    11
  AMP PEAK 18(20Q13.2) WILD-TYPE                                  40
                                vv
clus                             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  AMP PEAK 18(20Q13.2) MUTATED                                       2
  AMP PEAK 18(20Q13.2) WILD-TYPE                                     2
                                vv
clus                             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  AMP PEAK 18(20Q13.2) MUTATED                                                  0
  AMP PEAK 18(20Q13.2) WILD-TYPE                                                1
D16V8, multiclass
                                                  clus
vv                                                 AMP PEAK 18(20Q13.2) MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                        11
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                       2
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                            0
                                                  clus
vv                                                 AMP PEAK 18(20Q13.2) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                          40
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                         2
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                              1
D16V9, continuous
[1] "Remove cluster labels:"       "AMP PEAK 18(20Q13.2) MUTATED"
clus
  AMP PEAK 18(20Q13.2) MUTATED AMP PEAK 18(20Q13.2) WILD-TYPE 
                             2                             12 
                    TCGA-F2-6880                     TCGA-FB-A4P5 
"AMP PEAK 18(20Q13.2) WILD-TYPE" "AMP PEAK 18(20Q13.2) WILD-TYPE" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
"AMP PEAK 18(20Q13.2) WILD-TYPE" "AMP PEAK 18(20Q13.2) WILD-TYPE" 
                    TCGA-IB-7644                     TCGA-IB-7649 
"AMP PEAK 18(20Q13.2) WILD-TYPE" "AMP PEAK 18(20Q13.2) WILD-TYPE" 
                    TCGA-IB-7651                     TCGA-IB-7885 
"AMP PEAK 18(20Q13.2) WILD-TYPE" "AMP PEAK 18(20Q13.2) WILD-TYPE" 
                    TCGA-IB-7887                     TCGA-IB-7891 
"AMP PEAK 18(20Q13.2) WILD-TYPE" "AMP PEAK 18(20Q13.2) WILD-TYPE" 
                    TCGA-IB-8126                     TCGA-IB-A5SS 
"AMP PEAK 18(20Q13.2) WILD-TYPE" "AMP PEAK 18(20Q13.2) WILD-TYPE" 
D16V10, continuous
[1] "Remove cluster labels:"       "AMP PEAK 18(20Q13.2) MUTATED"
clus
  AMP PEAK 18(20Q13.2) MUTATED AMP PEAK 18(20Q13.2) WILD-TYPE 
                             2                              9 
                    TCGA-FB-A4P5                     TCGA-H6-8124 
"AMP PEAK 18(20Q13.2) WILD-TYPE" "AMP PEAK 18(20Q13.2) WILD-TYPE" 
                    TCGA-IB-7644                     TCGA-IB-7649 
"AMP PEAK 18(20Q13.2) WILD-TYPE" "AMP PEAK 18(20Q13.2) WILD-TYPE" 
                    TCGA-IB-7651                     TCGA-IB-7885 
"AMP PEAK 18(20Q13.2) WILD-TYPE" "AMP PEAK 18(20Q13.2) WILD-TYPE" 
                    TCGA-IB-7891                     TCGA-IB-8126 
"AMP PEAK 18(20Q13.2) WILD-TYPE" "AMP PEAK 18(20Q13.2) WILD-TYPE" 
                    TCGA-IB-A5SS 
"AMP PEAK 18(20Q13.2) WILD-TYPE" 
                                vv
clus                             R0 R1 RX
  AMP PEAK 18(20Q13.2) MUTATED    5  7  1
  AMP PEAK 18(20Q13.2) WILD-TYPE 27 14  1
D16V11, multiclass
    clus
vv   AMP PEAK 18(20Q13.2) MUTATED AMP PEAK 18(20Q13.2) WILD-TYPE
  R0                            5                             27
  R1                            7                             14
  RX                            1                              1
D16V12, continuous

Clustering(17) Variable = AMP PEAK 19(XP22.11) MUTATION ANALYSIS
D17V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 19(XP22.11) MUTATED    2  1
  AMP PEAK 19(XP22.11) WILD-TYPE 33 18
  AMP PEAK 19(XP22.11) MUTATED AMP PEAK 19(XP22.11) WILD-TYPE 
                             3                             51 
  AMP PEAK 19(XP22.11) MUTATED AMP PEAK 19(XP22.11) WILD-TYPE 
                             1                             18 
$`AMP PEAK 19(XP22.11) MUTATED`
TCGA-F2-6880 TCGA-F2-7276 TCGA-HZ-7925 
        9.96         7.07        12.03 

$`AMP PEAK 19(XP22.11) WILD-TYPE`
TCGA-F2-6879 TCGA-F2-7273 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A4P5 TCGA-FB-A545 
       10.98        11.84         5.03         5.19         0.13         0.03 
TCGA-H6-8124 TCGA-H6-A45N TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 
       12.89         7.63         7.86         0.92         0.66         0.13 
TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 
        0.26        12.13         0.26         0.62         0.99         0.69 
TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8636 TCGA-HZ-8638 
        3.91         0.92         0.49         0.10         0.16         2.96 
TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 
        0.76         1.02         5.98         1.51        11.41        49.38 
TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 
        4.77        21.86        15.35        19.82        15.65        27.98 
TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 
        4.04         3.58        43.79        15.78        19.66        16.04 
TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP 
        3.85        15.95         0.56        17.13        10.82         9.83 
TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST 
        7.20        15.12         0.26 

  AMP PEAK 19(XP22.11) MUTATED AMP PEAK 19(XP22.11) WILD-TYPE 
                          7.07                           0.03 
  AMP PEAK 19(XP22.11) MUTATED AMP PEAK 19(XP22.11) WILD-TYPE 
                         12.03                          49.38 
  AMP PEAK 19(XP22.11) MUTATED AMP PEAK 19(XP22.11) WILD-TYPE 
                          9.96                           5.03 
[1] "7.1 - 12.0 (10.0)" "0.0 - 49.4 (5.0)" 
                    TCGA-F2-6879                     TCGA-F2-6880 
"AMP PEAK 19(XP22.11) WILD-TYPE"   "AMP PEAK 19(XP22.11) MUTATED" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"AMP PEAK 19(XP22.11) WILD-TYPE"   "AMP PEAK 19(XP22.11) MUTATED" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
"AMP PEAK 19(XP22.11) WILD-TYPE" "AMP PEAK 19(XP22.11) WILD-TYPE" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"AMP PEAK 19(XP22.11) WILD-TYPE" "AMP PEAK 19(XP22.11) WILD-TYPE" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
"AMP PEAK 19(XP22.11) WILD-TYPE" "AMP PEAK 19(XP22.11) WILD-TYPE" 
                    TCGA-HZ-7289                     TCGA-HZ-7918 
"AMP PEAK 19(XP22.11) WILD-TYPE" "AMP PEAK 19(XP22.11) WILD-TYPE" 
                    TCGA-HZ-7919                     TCGA-HZ-7922 
"AMP PEAK 19(XP22.11) WILD-TYPE" "AMP PEAK 19(XP22.11) WILD-TYPE" 
                    TCGA-HZ-7923                     TCGA-HZ-7924 
"AMP PEAK 19(XP22.11) WILD-TYPE" "AMP PEAK 19(XP22.11) WILD-TYPE" 
                    TCGA-HZ-7925                     TCGA-HZ-7926 
  "AMP PEAK 19(XP22.11) MUTATED" "AMP PEAK 19(XP22.11) WILD-TYPE" 
                    TCGA-HZ-8001                     TCGA-HZ-8002 
"AMP PEAK 19(XP22.11) WILD-TYPE" "AMP PEAK 19(XP22.11) WILD-TYPE" 
                    TCGA-HZ-8003                     TCGA-HZ-8005 
"AMP PEAK 19(XP22.11) WILD-TYPE" "AMP PEAK 19(XP22.11) WILD-TYPE" 
                    TCGA-HZ-8315                     TCGA-HZ-8317 
"AMP PEAK 19(XP22.11) WILD-TYPE" "AMP PEAK 19(XP22.11) WILD-TYPE" 
                    TCGA-HZ-8519                     TCGA-HZ-8636 
"AMP PEAK 19(XP22.11) WILD-TYPE" "AMP PEAK 19(XP22.11) WILD-TYPE" 
                    TCGA-HZ-8638                     TCGA-HZ-A49G 
"AMP PEAK 19(XP22.11) WILD-TYPE" "AMP PEAK 19(XP22.11) WILD-TYPE" 
                    TCGA-HZ-A49H                     TCGA-HZ-A4BH 
"AMP PEAK 19(XP22.11) WILD-TYPE" "AMP PEAK 19(XP22.11) WILD-TYPE" 
                    TCGA-HZ-A4BK                     TCGA-IB-7644 
"AMP PEAK 19(XP22.11) WILD-TYPE" "AMP PEAK 19(XP22.11) WILD-TYPE" 
                    TCGA-IB-7645                     TCGA-IB-7646 
"AMP PEAK 19(XP22.11) WILD-TYPE" "AMP PEAK 19(XP22.11) WILD-TYPE" 
                    TCGA-IB-7647                     TCGA-IB-7649 
"AMP PEAK 19(XP22.11) WILD-TYPE" "AMP PEAK 19(XP22.11) WILD-TYPE" 
                    TCGA-IB-7651                     TCGA-IB-7652 
"AMP PEAK 19(XP22.11) WILD-TYPE" "AMP PEAK 19(XP22.11) WILD-TYPE" 
                    TCGA-IB-7885                     TCGA-IB-7886 
"AMP PEAK 19(XP22.11) WILD-TYPE" "AMP PEAK 19(XP22.11) WILD-TYPE" 
                    TCGA-IB-7887                     TCGA-IB-7888 
"AMP PEAK 19(XP22.11) WILD-TYPE" "AMP PEAK 19(XP22.11) WILD-TYPE" 
                    TCGA-IB-7889                     TCGA-IB-7890 
"AMP PEAK 19(XP22.11) WILD-TYPE" "AMP PEAK 19(XP22.11) WILD-TYPE" 
                    TCGA-IB-7891                     TCGA-IB-7893 
"AMP PEAK 19(XP22.11) WILD-TYPE" "AMP PEAK 19(XP22.11) WILD-TYPE" 
                    TCGA-IB-7897                     TCGA-IB-8126 
"AMP PEAK 19(XP22.11) WILD-TYPE" "AMP PEAK 19(XP22.11) WILD-TYPE" 
                    TCGA-IB-8127                     TCGA-IB-A5SO 
"AMP PEAK 19(XP22.11) WILD-TYPE" "AMP PEAK 19(XP22.11) WILD-TYPE" 
                    TCGA-IB-A5SP                     TCGA-IB-A5SQ 
"AMP PEAK 19(XP22.11) WILD-TYPE" "AMP PEAK 19(XP22.11) WILD-TYPE" 
                    TCGA-IB-A5SS                     TCGA-IB-A5ST 
"AMP PEAK 19(XP22.11) WILD-TYPE" "AMP PEAK 19(XP22.11) WILD-TYPE" 
                    TCGA-F2-6879                     TCGA-F2-6880 
"AMP PEAK 19(XP22.11) WILD-TYPE"   "AMP PEAK 19(XP22.11) MUTATED" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"AMP PEAK 19(XP22.11) WILD-TYPE"   "AMP PEAK 19(XP22.11) MUTATED" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
"AMP PEAK 19(XP22.11) WILD-TYPE" "AMP PEAK 19(XP22.11) WILD-TYPE" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"AMP PEAK 19(XP22.11) WILD-TYPE" "AMP PEAK 19(XP22.11) WILD-TYPE" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
"AMP PEAK 19(XP22.11) WILD-TYPE" "AMP PEAK 19(XP22.11) WILD-TYPE" 
                    TCGA-HZ-7289                     TCGA-HZ-7918 
"AMP PEAK 19(XP22.11) WILD-TYPE" "AMP PEAK 19(XP22.11) WILD-TYPE" 
                    TCGA-HZ-7919                     TCGA-HZ-7922 
"AMP PEAK 19(XP22.11) WILD-TYPE" "AMP PEAK 19(XP22.11) WILD-TYPE" 
                    TCGA-HZ-7923                     TCGA-HZ-7924 
"AMP PEAK 19(XP22.11) WILD-TYPE" "AMP PEAK 19(XP22.11) WILD-TYPE" 
                    TCGA-HZ-7925                     TCGA-HZ-7926 
  "AMP PEAK 19(XP22.11) MUTATED" "AMP PEAK 19(XP22.11) WILD-TYPE" 
                    TCGA-HZ-8001                     TCGA-HZ-8002 
"AMP PEAK 19(XP22.11) WILD-TYPE" "AMP PEAK 19(XP22.11) WILD-TYPE" 
                    TCGA-HZ-8003                     TCGA-HZ-8005 
"AMP PEAK 19(XP22.11) WILD-TYPE" "AMP PEAK 19(XP22.11) WILD-TYPE" 
                    TCGA-HZ-8315                     TCGA-HZ-8317 
"AMP PEAK 19(XP22.11) WILD-TYPE" "AMP PEAK 19(XP22.11) WILD-TYPE" 
                    TCGA-HZ-8519                     TCGA-HZ-8636 
"AMP PEAK 19(XP22.11) WILD-TYPE" "AMP PEAK 19(XP22.11) WILD-TYPE" 
                    TCGA-HZ-8638                     TCGA-HZ-A49G 
"AMP PEAK 19(XP22.11) WILD-TYPE" "AMP PEAK 19(XP22.11) WILD-TYPE" 
                    TCGA-HZ-A49H                     TCGA-HZ-A4BH 
"AMP PEAK 19(XP22.11) WILD-TYPE" "AMP PEAK 19(XP22.11) WILD-TYPE" 
                    TCGA-HZ-A4BK                     TCGA-IB-7644 
"AMP PEAK 19(XP22.11) WILD-TYPE" "AMP PEAK 19(XP22.11) WILD-TYPE" 
                    TCGA-IB-7645                     TCGA-IB-7646 
"AMP PEAK 19(XP22.11) WILD-TYPE" "AMP PEAK 19(XP22.11) WILD-TYPE" 
                    TCGA-IB-7647                     TCGA-IB-7649 
"AMP PEAK 19(XP22.11) WILD-TYPE" "AMP PEAK 19(XP22.11) WILD-TYPE" 
                    TCGA-IB-7651                     TCGA-IB-7652 
"AMP PEAK 19(XP22.11) WILD-TYPE" "AMP PEAK 19(XP22.11) WILD-TYPE" 
                    TCGA-IB-7885                     TCGA-IB-7886 
"AMP PEAK 19(XP22.11) WILD-TYPE" "AMP PEAK 19(XP22.11) WILD-TYPE" 
                    TCGA-IB-7887                     TCGA-IB-7888 
"AMP PEAK 19(XP22.11) WILD-TYPE" "AMP PEAK 19(XP22.11) WILD-TYPE" 
                    TCGA-IB-7889                     TCGA-IB-7890 
"AMP PEAK 19(XP22.11) WILD-TYPE" "AMP PEAK 19(XP22.11) WILD-TYPE" 
                    TCGA-IB-7891                     TCGA-IB-7893 
"AMP PEAK 19(XP22.11) WILD-TYPE" "AMP PEAK 19(XP22.11) WILD-TYPE" 
                    TCGA-IB-7897                     TCGA-IB-8126 
"AMP PEAK 19(XP22.11) WILD-TYPE" "AMP PEAK 19(XP22.11) WILD-TYPE" 
                    TCGA-IB-8127                     TCGA-IB-A5SO 
"AMP PEAK 19(XP22.11) WILD-TYPE" "AMP PEAK 19(XP22.11) WILD-TYPE" 
                    TCGA-IB-A5SP                     TCGA-IB-A5SQ 
"AMP PEAK 19(XP22.11) WILD-TYPE" "AMP PEAK 19(XP22.11) WILD-TYPE" 
                    TCGA-IB-A5SS                     TCGA-IB-A5ST 
"AMP PEAK 19(XP22.11) WILD-TYPE" "AMP PEAK 19(XP22.11) WILD-TYPE" 
                    TCGA-F2-6879                     TCGA-F2-6880 
"AMP PEAK 19(XP22.11) WILD-TYPE"   "AMP PEAK 19(XP22.11) MUTATED" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"AMP PEAK 19(XP22.11) WILD-TYPE"   "AMP PEAK 19(XP22.11) MUTATED" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
"AMP PEAK 19(XP22.11) WILD-TYPE" "AMP PEAK 19(XP22.11) WILD-TYPE" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"AMP PEAK 19(XP22.11) WILD-TYPE" "AMP PEAK 19(XP22.11) WILD-TYPE" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
"AMP PEAK 19(XP22.11) WILD-TYPE" "AMP PEAK 19(XP22.11) WILD-TYPE" 
                    TCGA-HZ-7289                     TCGA-HZ-7918 
"AMP PEAK 19(XP22.11) WILD-TYPE" "AMP PEAK 19(XP22.11) WILD-TYPE" 
                    TCGA-HZ-7919                     TCGA-HZ-7922 
"AMP PEAK 19(XP22.11) WILD-TYPE" "AMP PEAK 19(XP22.11) WILD-TYPE" 
                    TCGA-HZ-7923                     TCGA-HZ-7924 
"AMP PEAK 19(XP22.11) WILD-TYPE" "AMP PEAK 19(XP22.11) WILD-TYPE" 
                    TCGA-HZ-7925                     TCGA-HZ-7926 
  "AMP PEAK 19(XP22.11) MUTATED" "AMP PEAK 19(XP22.11) WILD-TYPE" 
                    TCGA-HZ-8001                     TCGA-HZ-8002 
"AMP PEAK 19(XP22.11) WILD-TYPE" "AMP PEAK 19(XP22.11) WILD-TYPE" 
                    TCGA-HZ-8003                     TCGA-HZ-8005 
"AMP PEAK 19(XP22.11) WILD-TYPE" "AMP PEAK 19(XP22.11) WILD-TYPE" 
                    TCGA-HZ-8315                     TCGA-HZ-8317 
"AMP PEAK 19(XP22.11) WILD-TYPE" "AMP PEAK 19(XP22.11) WILD-TYPE" 
                    TCGA-HZ-8519                     TCGA-HZ-8636 
"AMP PEAK 19(XP22.11) WILD-TYPE" "AMP PEAK 19(XP22.11) WILD-TYPE" 
                    TCGA-HZ-8638                     TCGA-HZ-A49G 
"AMP PEAK 19(XP22.11) WILD-TYPE" "AMP PEAK 19(XP22.11) WILD-TYPE" 
                    TCGA-HZ-A49H                     TCGA-HZ-A4BH 
"AMP PEAK 19(XP22.11) WILD-TYPE" "AMP PEAK 19(XP22.11) WILD-TYPE" 
                    TCGA-HZ-A4BK                     TCGA-IB-7644 
"AMP PEAK 19(XP22.11) WILD-TYPE" "AMP PEAK 19(XP22.11) WILD-TYPE" 
                    TCGA-IB-7645                     TCGA-IB-7646 
"AMP PEAK 19(XP22.11) WILD-TYPE" "AMP PEAK 19(XP22.11) WILD-TYPE" 
                    TCGA-IB-7647                     TCGA-IB-7649 
"AMP PEAK 19(XP22.11) WILD-TYPE" "AMP PEAK 19(XP22.11) WILD-TYPE" 
                    TCGA-IB-7651                     TCGA-IB-7652 
"AMP PEAK 19(XP22.11) WILD-TYPE" "AMP PEAK 19(XP22.11) WILD-TYPE" 
                    TCGA-IB-7885                     TCGA-IB-7886 
"AMP PEAK 19(XP22.11) WILD-TYPE" "AMP PEAK 19(XP22.11) WILD-TYPE" 
                    TCGA-IB-7887                     TCGA-IB-7888 
"AMP PEAK 19(XP22.11) WILD-TYPE" "AMP PEAK 19(XP22.11) WILD-TYPE" 
                    TCGA-IB-7889                     TCGA-IB-7890 
"AMP PEAK 19(XP22.11) WILD-TYPE" "AMP PEAK 19(XP22.11) WILD-TYPE" 
                    TCGA-IB-7891                     TCGA-IB-7893 
"AMP PEAK 19(XP22.11) WILD-TYPE" "AMP PEAK 19(XP22.11) WILD-TYPE" 
                    TCGA-IB-7897                     TCGA-IB-8126 
"AMP PEAK 19(XP22.11) WILD-TYPE" "AMP PEAK 19(XP22.11) WILD-TYPE" 
                    TCGA-IB-8127                     TCGA-IB-A5SO 
"AMP PEAK 19(XP22.11) WILD-TYPE" "AMP PEAK 19(XP22.11) WILD-TYPE" 
                    TCGA-IB-A5SP                     TCGA-IB-A5SQ 
"AMP PEAK 19(XP22.11) WILD-TYPE" "AMP PEAK 19(XP22.11) WILD-TYPE" 
                    TCGA-IB-A5SS                     TCGA-IB-A5ST 
"AMP PEAK 19(XP22.11) WILD-TYPE" "AMP PEAK 19(XP22.11) WILD-TYPE" 
[1] "hr=" "1.2"
D17V2, continuous
                                vv
clus                             STAGE IA STAGE IB STAGE IIA STAGE IIB
  AMP PEAK 19(XP22.11) MUTATED          0        0         0         3
  AMP PEAK 19(XP22.11) WILD-TYPE        2        3         7        38
                                vv
clus                             STAGE III STAGE IV
  AMP PEAK 19(XP22.11) MUTATED           0        0
  AMP PEAK 19(XP22.11) WILD-TYPE         2        2
D17V3, multiclass
                                vv
clus                             T1+T2 T3+T4
  AMP PEAK 19(XP22.11) MUTATED       0     3
  AMP PEAK 19(XP22.11) WILD-TYPE     6    48
D17V4, multiclass
       clus
vv      AMP PEAK 19(XP22.11) MUTATED AMP PEAK 19(XP22.11) WILD-TYPE
  T1+T2                            0                              6
  T3+T4                            3                             48
D17V5, binary
                                cls
clus                              0  1
  AMP PEAK 19(XP22.11) MUTATED    0  3
  AMP PEAK 19(XP22.11) WILD-TYPE 14 40
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 19(XP22.11) MUTATED      0    3
  AMP PEAK 19(XP22.11) WILD-TYPE   14   40
   clus
vv  AMP PEAK 19(XP22.11) MUTATED AMP PEAK 19(XP22.11) WILD-TYPE
  0                            0                             14
  1                            3                             40
                                vv
clus                             M0 M1 MX
  AMP PEAK 19(XP22.11) MUTATED    2  0  1
  AMP PEAK 19(XP22.11) WILD-TYPE 30  2 22
D17V6, multiclass
    clus
vv   AMP PEAK 19(XP22.11) MUTATED AMP PEAK 19(XP22.11) WILD-TYPE
  M0                            2                             30
  M1                            0                              2
  MX                            1                             22
D17V7, binary
                                cls
clus                              0  1
  AMP PEAK 19(XP22.11) MUTATED    0  3
  AMP PEAK 19(XP22.11) WILD-TYPE 31 23
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 19(XP22.11) MUTATED      0    3
  AMP PEAK 19(XP22.11) WILD-TYPE   31   23
        clus
vv       AMP PEAK 19(XP22.11) MUTATED AMP PEAK 19(XP22.11) WILD-TYPE
  FEMALE                            0                             31
  MALE                              3                             23
                                vv
clus                             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  AMP PEAK 19(XP22.11) MUTATED                                     3
  AMP PEAK 19(XP22.11) WILD-TYPE                                  48
                                vv
clus                             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  AMP PEAK 19(XP22.11) MUTATED                                       0
  AMP PEAK 19(XP22.11) WILD-TYPE                                     4
                                vv
clus                             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  AMP PEAK 19(XP22.11) MUTATED                                                  0
  AMP PEAK 19(XP22.11) WILD-TYPE                                                1
D17V8, multiclass
                                                  clus
vv                                                 AMP PEAK 19(XP22.11) MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                         3
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                       0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                            0
                                                  clus
vv                                                 AMP PEAK 19(XP22.11) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                          48
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                         4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                              1
D17V9, continuous
[1] "Remove cluster labels:"       "AMP PEAK 19(XP22.11) MUTATED"
clus
  AMP PEAK 19(XP22.11) MUTATED AMP PEAK 19(XP22.11) WILD-TYPE 
                             1                             13 
                    TCGA-FB-A4P5                     TCGA-H6-8124 
"AMP PEAK 19(XP22.11) WILD-TYPE" "AMP PEAK 19(XP22.11) WILD-TYPE" 
                    TCGA-H6-A45N                     TCGA-IB-7644 
"AMP PEAK 19(XP22.11) WILD-TYPE" "AMP PEAK 19(XP22.11) WILD-TYPE" 
                    TCGA-IB-7649                     TCGA-IB-7651 
"AMP PEAK 19(XP22.11) WILD-TYPE" "AMP PEAK 19(XP22.11) WILD-TYPE" 
                    TCGA-IB-7885                     TCGA-IB-7886 
"AMP PEAK 19(XP22.11) WILD-TYPE" "AMP PEAK 19(XP22.11) WILD-TYPE" 
                    TCGA-IB-7887                     TCGA-IB-7891 
"AMP PEAK 19(XP22.11) WILD-TYPE" "AMP PEAK 19(XP22.11) WILD-TYPE" 
                    TCGA-IB-8126                     TCGA-IB-8127 
"AMP PEAK 19(XP22.11) WILD-TYPE" "AMP PEAK 19(XP22.11) WILD-TYPE" 
                    TCGA-IB-A5SS 
"AMP PEAK 19(XP22.11) WILD-TYPE" 
D17V10, continuous
                                vv
clus                             R0 R1 RX
  AMP PEAK 19(XP22.11) MUTATED    3  0  0
  AMP PEAK 19(XP22.11) WILD-TYPE 29 21  2
D17V11, multiclass
    clus
vv   AMP PEAK 19(XP22.11) MUTATED AMP PEAK 19(XP22.11) WILD-TYPE
  R0                            3                             29
  R1                            0                             21
  RX                            0                              2
D17V12, continuous

Clustering(18) Variable = AMP PEAK 20(XQ27.1) MUTATION ANALYSIS
D18V1, survival
                               sevent
clus2                            0  1
  AMP PEAK 20(XQ27.1) MUTATED    4  1
  AMP PEAK 20(XQ27.1) WILD-TYPE 31 18
  AMP PEAK 20(XQ27.1) MUTATED AMP PEAK 20(XQ27.1) WILD-TYPE 
                            5                            49 
  AMP PEAK 20(XQ27.1) MUTATED AMP PEAK 20(XQ27.1) WILD-TYPE 
                            1                            18 
$`AMP PEAK 20(XQ27.1) MUTATED`
TCGA-F2-6879 TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-8001 TCGA-IB-7652 
       10.98         7.86         0.92         0.62        15.65 

$`AMP PEAK 20(XQ27.1) WILD-TYPE`
TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A4P5 
        9.96        11.84         7.07         5.03         5.19         0.13 
TCGA-FB-A545 TCGA-H6-8124 TCGA-H6-A45N TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 
        0.03        12.89         7.63         0.66         0.13         0.26 
TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 
       12.13        12.03         0.26         0.99         0.69         3.91 
TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G 
        0.92         0.49         0.10         0.16         2.96         0.76 
TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 
        1.02         5.98         1.51        11.41        49.38         4.77 
TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 
       21.86        15.35        19.82        27.98         4.04         3.58 
TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 
       43.79        15.78        19.66        16.04         3.85        15.95 
TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS 
        0.56        17.13        10.82         9.83         7.20        15.12 
TCGA-IB-A5ST 
        0.26 

  AMP PEAK 20(XQ27.1) MUTATED AMP PEAK 20(XQ27.1) WILD-TYPE 
                         0.62                          0.03 
  AMP PEAK 20(XQ27.1) MUTATED AMP PEAK 20(XQ27.1) WILD-TYPE 
                        15.65                         49.38 
  AMP PEAK 20(XQ27.1) MUTATED AMP PEAK 20(XQ27.1) WILD-TYPE 
                         7.86                          5.19 
[1] "0.6 - 15.7 (7.9)" "0.0 - 49.4 (5.2)"
                   TCGA-F2-6879                    TCGA-F2-6880 
  "AMP PEAK 20(XQ27.1) MUTATED" "AMP PEAK 20(XQ27.1) WILD-TYPE" 
                   TCGA-F2-7273                    TCGA-F2-7276 
"AMP PEAK 20(XQ27.1) WILD-TYPE" "AMP PEAK 20(XQ27.1) WILD-TYPE" 
                   TCGA-F2-A44G                    TCGA-F2-A44H 
"AMP PEAK 20(XQ27.1) WILD-TYPE" "AMP PEAK 20(XQ27.1) WILD-TYPE" 
                   TCGA-FB-A4P5                    TCGA-FB-A545 
"AMP PEAK 20(XQ27.1) WILD-TYPE" "AMP PEAK 20(XQ27.1) WILD-TYPE" 
                   TCGA-H6-8124                    TCGA-H6-A45N 
"AMP PEAK 20(XQ27.1) WILD-TYPE" "AMP PEAK 20(XQ27.1) WILD-TYPE" 
                   TCGA-HZ-7289                    TCGA-HZ-7918 
  "AMP PEAK 20(XQ27.1) MUTATED"   "AMP PEAK 20(XQ27.1) MUTATED" 
                   TCGA-HZ-7919                    TCGA-HZ-7922 
"AMP PEAK 20(XQ27.1) WILD-TYPE" "AMP PEAK 20(XQ27.1) WILD-TYPE" 
                   TCGA-HZ-7923                    TCGA-HZ-7924 
"AMP PEAK 20(XQ27.1) WILD-TYPE" "AMP PEAK 20(XQ27.1) WILD-TYPE" 
                   TCGA-HZ-7925                    TCGA-HZ-7926 
"AMP PEAK 20(XQ27.1) WILD-TYPE" "AMP PEAK 20(XQ27.1) WILD-TYPE" 
                   TCGA-HZ-8001                    TCGA-HZ-8002 
  "AMP PEAK 20(XQ27.1) MUTATED" "AMP PEAK 20(XQ27.1) WILD-TYPE" 
                   TCGA-HZ-8003                    TCGA-HZ-8005 
"AMP PEAK 20(XQ27.1) WILD-TYPE" "AMP PEAK 20(XQ27.1) WILD-TYPE" 
                   TCGA-HZ-8315                    TCGA-HZ-8317 
"AMP PEAK 20(XQ27.1) WILD-TYPE" "AMP PEAK 20(XQ27.1) WILD-TYPE" 
                   TCGA-HZ-8519                    TCGA-HZ-8636 
"AMP PEAK 20(XQ27.1) WILD-TYPE" "AMP PEAK 20(XQ27.1) WILD-TYPE" 
                   TCGA-HZ-8638                    TCGA-HZ-A49G 
"AMP PEAK 20(XQ27.1) WILD-TYPE" "AMP PEAK 20(XQ27.1) WILD-TYPE" 
                   TCGA-HZ-A49H                    TCGA-HZ-A4BH 
"AMP PEAK 20(XQ27.1) WILD-TYPE" "AMP PEAK 20(XQ27.1) WILD-TYPE" 
                   TCGA-HZ-A4BK                    TCGA-IB-7644 
"AMP PEAK 20(XQ27.1) WILD-TYPE" "AMP PEAK 20(XQ27.1) WILD-TYPE" 
                   TCGA-IB-7645                    TCGA-IB-7646 
"AMP PEAK 20(XQ27.1) WILD-TYPE" "AMP PEAK 20(XQ27.1) WILD-TYPE" 
                   TCGA-IB-7647                    TCGA-IB-7649 
"AMP PEAK 20(XQ27.1) WILD-TYPE" "AMP PEAK 20(XQ27.1) WILD-TYPE" 
                   TCGA-IB-7651                    TCGA-IB-7652 
"AMP PEAK 20(XQ27.1) WILD-TYPE"   "AMP PEAK 20(XQ27.1) MUTATED" 
                   TCGA-IB-7885                    TCGA-IB-7886 
"AMP PEAK 20(XQ27.1) WILD-TYPE" "AMP PEAK 20(XQ27.1) WILD-TYPE" 
                   TCGA-IB-7887                    TCGA-IB-7888 
"AMP PEAK 20(XQ27.1) WILD-TYPE" "AMP PEAK 20(XQ27.1) WILD-TYPE" 
                   TCGA-IB-7889                    TCGA-IB-7890 
"AMP PEAK 20(XQ27.1) WILD-TYPE" "AMP PEAK 20(XQ27.1) WILD-TYPE" 
                   TCGA-IB-7891                    TCGA-IB-7893 
"AMP PEAK 20(XQ27.1) WILD-TYPE" "AMP PEAK 20(XQ27.1) WILD-TYPE" 
                   TCGA-IB-7897                    TCGA-IB-8126 
"AMP PEAK 20(XQ27.1) WILD-TYPE" "AMP PEAK 20(XQ27.1) WILD-TYPE" 
                   TCGA-IB-8127                    TCGA-IB-A5SO 
"AMP PEAK 20(XQ27.1) WILD-TYPE" "AMP PEAK 20(XQ27.1) WILD-TYPE" 
                   TCGA-IB-A5SP                    TCGA-IB-A5SQ 
"AMP PEAK 20(XQ27.1) WILD-TYPE" "AMP PEAK 20(XQ27.1) WILD-TYPE" 
                   TCGA-IB-A5SS                    TCGA-IB-A5ST 
"AMP PEAK 20(XQ27.1) WILD-TYPE" "AMP PEAK 20(XQ27.1) WILD-TYPE" 
                   TCGA-F2-6879                    TCGA-F2-6880 
  "AMP PEAK 20(XQ27.1) MUTATED" "AMP PEAK 20(XQ27.1) WILD-TYPE" 
                   TCGA-F2-7273                    TCGA-F2-7276 
"AMP PEAK 20(XQ27.1) WILD-TYPE" "AMP PEAK 20(XQ27.1) WILD-TYPE" 
                   TCGA-F2-A44G                    TCGA-F2-A44H 
"AMP PEAK 20(XQ27.1) WILD-TYPE" "AMP PEAK 20(XQ27.1) WILD-TYPE" 
                   TCGA-FB-A4P5                    TCGA-FB-A545 
"AMP PEAK 20(XQ27.1) WILD-TYPE" "AMP PEAK 20(XQ27.1) WILD-TYPE" 
                   TCGA-H6-8124                    TCGA-H6-A45N 
"AMP PEAK 20(XQ27.1) WILD-TYPE" "AMP PEAK 20(XQ27.1) WILD-TYPE" 
                   TCGA-HZ-7289                    TCGA-HZ-7918 
  "AMP PEAK 20(XQ27.1) MUTATED"   "AMP PEAK 20(XQ27.1) MUTATED" 
                   TCGA-HZ-7919                    TCGA-HZ-7922 
"AMP PEAK 20(XQ27.1) WILD-TYPE" "AMP PEAK 20(XQ27.1) WILD-TYPE" 
                   TCGA-HZ-7923                    TCGA-HZ-7924 
"AMP PEAK 20(XQ27.1) WILD-TYPE" "AMP PEAK 20(XQ27.1) WILD-TYPE" 
                   TCGA-HZ-7925                    TCGA-HZ-7926 
"AMP PEAK 20(XQ27.1) WILD-TYPE" "AMP PEAK 20(XQ27.1) WILD-TYPE" 
                   TCGA-HZ-8001                    TCGA-HZ-8002 
  "AMP PEAK 20(XQ27.1) MUTATED" "AMP PEAK 20(XQ27.1) WILD-TYPE" 
                   TCGA-HZ-8003                    TCGA-HZ-8005 
"AMP PEAK 20(XQ27.1) WILD-TYPE" "AMP PEAK 20(XQ27.1) WILD-TYPE" 
                   TCGA-HZ-8315                    TCGA-HZ-8317 
"AMP PEAK 20(XQ27.1) WILD-TYPE" "AMP PEAK 20(XQ27.1) WILD-TYPE" 
                   TCGA-HZ-8519                    TCGA-HZ-8636 
"AMP PEAK 20(XQ27.1) WILD-TYPE" "AMP PEAK 20(XQ27.1) WILD-TYPE" 
                   TCGA-HZ-8638                    TCGA-HZ-A49G 
"AMP PEAK 20(XQ27.1) WILD-TYPE" "AMP PEAK 20(XQ27.1) WILD-TYPE" 
                   TCGA-HZ-A49H                    TCGA-HZ-A4BH 
"AMP PEAK 20(XQ27.1) WILD-TYPE" "AMP PEAK 20(XQ27.1) WILD-TYPE" 
                   TCGA-HZ-A4BK                    TCGA-IB-7644 
"AMP PEAK 20(XQ27.1) WILD-TYPE" "AMP PEAK 20(XQ27.1) WILD-TYPE" 
                   TCGA-IB-7645                    TCGA-IB-7646 
"AMP PEAK 20(XQ27.1) WILD-TYPE" "AMP PEAK 20(XQ27.1) WILD-TYPE" 
                   TCGA-IB-7647                    TCGA-IB-7649 
"AMP PEAK 20(XQ27.1) WILD-TYPE" "AMP PEAK 20(XQ27.1) WILD-TYPE" 
                   TCGA-IB-7651                    TCGA-IB-7652 
"AMP PEAK 20(XQ27.1) WILD-TYPE"   "AMP PEAK 20(XQ27.1) MUTATED" 
                   TCGA-IB-7885                    TCGA-IB-7886 
"AMP PEAK 20(XQ27.1) WILD-TYPE" "AMP PEAK 20(XQ27.1) WILD-TYPE" 
                   TCGA-IB-7887                    TCGA-IB-7888 
"AMP PEAK 20(XQ27.1) WILD-TYPE" "AMP PEAK 20(XQ27.1) WILD-TYPE" 
                   TCGA-IB-7889                    TCGA-IB-7890 
"AMP PEAK 20(XQ27.1) WILD-TYPE" "AMP PEAK 20(XQ27.1) WILD-TYPE" 
                   TCGA-IB-7891                    TCGA-IB-7893 
"AMP PEAK 20(XQ27.1) WILD-TYPE" "AMP PEAK 20(XQ27.1) WILD-TYPE" 
                   TCGA-IB-7897                    TCGA-IB-8126 
"AMP PEAK 20(XQ27.1) WILD-TYPE" "AMP PEAK 20(XQ27.1) WILD-TYPE" 
                   TCGA-IB-8127                    TCGA-IB-A5SO 
"AMP PEAK 20(XQ27.1) WILD-TYPE" "AMP PEAK 20(XQ27.1) WILD-TYPE" 
                   TCGA-IB-A5SP                    TCGA-IB-A5SQ 
"AMP PEAK 20(XQ27.1) WILD-TYPE" "AMP PEAK 20(XQ27.1) WILD-TYPE" 
                   TCGA-IB-A5SS                    TCGA-IB-A5ST 
"AMP PEAK 20(XQ27.1) WILD-TYPE" "AMP PEAK 20(XQ27.1) WILD-TYPE" 
                   TCGA-F2-6879                    TCGA-F2-6880 
  "AMP PEAK 20(XQ27.1) MUTATED" "AMP PEAK 20(XQ27.1) WILD-TYPE" 
                   TCGA-F2-7273                    TCGA-F2-7276 
"AMP PEAK 20(XQ27.1) WILD-TYPE" "AMP PEAK 20(XQ27.1) WILD-TYPE" 
                   TCGA-F2-A44G                    TCGA-F2-A44H 
"AMP PEAK 20(XQ27.1) WILD-TYPE" "AMP PEAK 20(XQ27.1) WILD-TYPE" 
                   TCGA-FB-A4P5                    TCGA-FB-A545 
"AMP PEAK 20(XQ27.1) WILD-TYPE" "AMP PEAK 20(XQ27.1) WILD-TYPE" 
                   TCGA-H6-8124                    TCGA-H6-A45N 
"AMP PEAK 20(XQ27.1) WILD-TYPE" "AMP PEAK 20(XQ27.1) WILD-TYPE" 
                   TCGA-HZ-7289                    TCGA-HZ-7918 
  "AMP PEAK 20(XQ27.1) MUTATED"   "AMP PEAK 20(XQ27.1) MUTATED" 
                   TCGA-HZ-7919                    TCGA-HZ-7922 
"AMP PEAK 20(XQ27.1) WILD-TYPE" "AMP PEAK 20(XQ27.1) WILD-TYPE" 
                   TCGA-HZ-7923                    TCGA-HZ-7924 
"AMP PEAK 20(XQ27.1) WILD-TYPE" "AMP PEAK 20(XQ27.1) WILD-TYPE" 
                   TCGA-HZ-7925                    TCGA-HZ-7926 
"AMP PEAK 20(XQ27.1) WILD-TYPE" "AMP PEAK 20(XQ27.1) WILD-TYPE" 
                   TCGA-HZ-8001                    TCGA-HZ-8002 
  "AMP PEAK 20(XQ27.1) MUTATED" "AMP PEAK 20(XQ27.1) WILD-TYPE" 
                   TCGA-HZ-8003                    TCGA-HZ-8005 
"AMP PEAK 20(XQ27.1) WILD-TYPE" "AMP PEAK 20(XQ27.1) WILD-TYPE" 
                   TCGA-HZ-8315                    TCGA-HZ-8317 
"AMP PEAK 20(XQ27.1) WILD-TYPE" "AMP PEAK 20(XQ27.1) WILD-TYPE" 
                   TCGA-HZ-8519                    TCGA-HZ-8636 
"AMP PEAK 20(XQ27.1) WILD-TYPE" "AMP PEAK 20(XQ27.1) WILD-TYPE" 
                   TCGA-HZ-8638                    TCGA-HZ-A49G 
"AMP PEAK 20(XQ27.1) WILD-TYPE" "AMP PEAK 20(XQ27.1) WILD-TYPE" 
                   TCGA-HZ-A49H                    TCGA-HZ-A4BH 
"AMP PEAK 20(XQ27.1) WILD-TYPE" "AMP PEAK 20(XQ27.1) WILD-TYPE" 
                   TCGA-HZ-A4BK                    TCGA-IB-7644 
"AMP PEAK 20(XQ27.1) WILD-TYPE" "AMP PEAK 20(XQ27.1) WILD-TYPE" 
                   TCGA-IB-7645                    TCGA-IB-7646 
"AMP PEAK 20(XQ27.1) WILD-TYPE" "AMP PEAK 20(XQ27.1) WILD-TYPE" 
                   TCGA-IB-7647                    TCGA-IB-7649 
"AMP PEAK 20(XQ27.1) WILD-TYPE" "AMP PEAK 20(XQ27.1) WILD-TYPE" 
                   TCGA-IB-7651                    TCGA-IB-7652 
"AMP PEAK 20(XQ27.1) WILD-TYPE"   "AMP PEAK 20(XQ27.1) MUTATED" 
                   TCGA-IB-7885                    TCGA-IB-7886 
"AMP PEAK 20(XQ27.1) WILD-TYPE" "AMP PEAK 20(XQ27.1) WILD-TYPE" 
                   TCGA-IB-7887                    TCGA-IB-7888 
"AMP PEAK 20(XQ27.1) WILD-TYPE" "AMP PEAK 20(XQ27.1) WILD-TYPE" 
                   TCGA-IB-7889                    TCGA-IB-7890 
"AMP PEAK 20(XQ27.1) WILD-TYPE" "AMP PEAK 20(XQ27.1) WILD-TYPE" 
                   TCGA-IB-7891                    TCGA-IB-7893 
"AMP PEAK 20(XQ27.1) WILD-TYPE" "AMP PEAK 20(XQ27.1) WILD-TYPE" 
                   TCGA-IB-7897                    TCGA-IB-8126 
"AMP PEAK 20(XQ27.1) WILD-TYPE" "AMP PEAK 20(XQ27.1) WILD-TYPE" 
                   TCGA-IB-8127                    TCGA-IB-A5SO 
"AMP PEAK 20(XQ27.1) WILD-TYPE" "AMP PEAK 20(XQ27.1) WILD-TYPE" 
                   TCGA-IB-A5SP                    TCGA-IB-A5SQ 
"AMP PEAK 20(XQ27.1) WILD-TYPE" "AMP PEAK 20(XQ27.1) WILD-TYPE" 
                   TCGA-IB-A5SS                    TCGA-IB-A5ST 
"AMP PEAK 20(XQ27.1) WILD-TYPE" "AMP PEAK 20(XQ27.1) WILD-TYPE" 
[1] "hr=" "1.2"
D18V2, continuous
                               vv
clus                            STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III
  AMP PEAK 20(XQ27.1) MUTATED          0        0         0         5         1
  AMP PEAK 20(XQ27.1) WILD-TYPE        2        3         7        36         1
                               vv
clus                            STAGE IV
  AMP PEAK 20(XQ27.1) MUTATED          0
  AMP PEAK 20(XQ27.1) WILD-TYPE        2
D18V3, multiclass
                               vv
clus                            T1+T2 T3+T4
  AMP PEAK 20(XQ27.1) MUTATED       0     6
  AMP PEAK 20(XQ27.1) WILD-TYPE     6    45
D18V4, multiclass
       clus
vv      AMP PEAK 20(XQ27.1) MUTATED AMP PEAK 20(XQ27.1) WILD-TYPE
  T1+T2                           0                             6
  T3+T4                           6                            45
D18V5, binary
                               cls
clus                             0  1
  AMP PEAK 20(XQ27.1) MUTATED    1  5
  AMP PEAK 20(XQ27.1) WILD-TYPE 13 38
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 20(XQ27.1) MUTATED      1    5
  AMP PEAK 20(XQ27.1) WILD-TYPE   13   38
   clus
vv  AMP PEAK 20(XQ27.1) MUTATED AMP PEAK 20(XQ27.1) WILD-TYPE
  0                           1                            13
  1                           5                            38
                               vv
clus                            M0 M1 MX
  AMP PEAK 20(XQ27.1) MUTATED    3  0  3
  AMP PEAK 20(XQ27.1) WILD-TYPE 29  2 20
D18V6, multiclass
    clus
vv   AMP PEAK 20(XQ27.1) MUTATED AMP PEAK 20(XQ27.1) WILD-TYPE
  M0                           3                            29
  M1                           0                             2
  MX                           3                            20
D18V7, binary
                               cls
clus                             0  1
  AMP PEAK 20(XQ27.1) MUTATED    2  4
  AMP PEAK 20(XQ27.1) WILD-TYPE 29 22
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 20(XQ27.1) MUTATED      2    4
  AMP PEAK 20(XQ27.1) WILD-TYPE   29   22
        clus
vv       AMP PEAK 20(XQ27.1) MUTATED AMP PEAK 20(XQ27.1) WILD-TYPE
  FEMALE                           2                            29
  MALE                             4                            22
                               vv
clus                            PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  AMP PEAK 20(XQ27.1) MUTATED                                     4
  AMP PEAK 20(XQ27.1) WILD-TYPE                                  47
                               vv
clus                            PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  AMP PEAK 20(XQ27.1) MUTATED                                       1
  AMP PEAK 20(XQ27.1) WILD-TYPE                                     3
                               vv
clus                            PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  AMP PEAK 20(XQ27.1) MUTATED                                                  0
  AMP PEAK 20(XQ27.1) WILD-TYPE                                                1
D18V8, multiclass
                                                  clus
vv                                                 AMP PEAK 20(XQ27.1) MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                        4
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                      1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                           0
                                                  clus
vv                                                 AMP PEAK 20(XQ27.1) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                         47
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                        3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                             1
D18V9, continuous
D18V10, continuous
                               vv
clus                            R0 R1 RX
  AMP PEAK 20(XQ27.1) MUTATED    4  1  1
  AMP PEAK 20(XQ27.1) WILD-TYPE 28 20  1
D18V11, multiclass
    clus
vv   AMP PEAK 20(XQ27.1) MUTATED AMP PEAK 20(XQ27.1) WILD-TYPE
  R0                           4                            28
  R1                           1                            20
  RX                           1                             1
D18V12, continuous

Clustering(19) Variable = DEL PEAK  1(1P36.22) MUTATION ANALYSIS
D19V1, survival
                                sevent
clus2                             0  1
  DEL PEAK  1(1P36.22) MUTATED    4  5
  DEL PEAK  1(1P36.22) WILD-TYPE 31 14
  DEL PEAK  1(1P36.22) MUTATED DEL PEAK  1(1P36.22) WILD-TYPE 
                             9                             45 
  DEL PEAK  1(1P36.22) MUTATED DEL PEAK  1(1P36.22) WILD-TYPE 
                             5                             14 
$`DEL PEAK  1(1P36.22) MUTATED`
TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-8005 TCGA-IB-7646 TCGA-IB-7651 TCGA-IB-7886 
        7.86         0.92         3.91         4.77        19.82         4.04 
TCGA-IB-7889 TCGA-IB-8127 TCGA-IB-A5SP 
       15.78        17.13         9.83 

$`DEL PEAK  1(1P36.22) WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.96        11.84         7.07         5.03         5.19 
TCGA-FB-A4P5 TCGA-FB-A545 TCGA-H6-8124 TCGA-H6-A45N TCGA-HZ-7919 TCGA-HZ-7922 
        0.13         0.03        12.89         7.63         0.66         0.13 
TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 
        0.26        12.13        12.03         0.26         0.62         0.99 
TCGA-HZ-8003 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8636 TCGA-HZ-8638 
        0.69         0.92         0.49         0.10         0.16         2.96 
TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 
        0.76         1.02         5.98         1.51        11.41        49.38 
TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7887 TCGA-IB-7888 
       21.86        15.35        15.65        27.98         3.58        43.79 
TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-A5SO 
       19.66        16.04         3.85        15.95         0.56        10.82 
TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST 
        7.20        15.12         0.26 

  DEL PEAK  1(1P36.22) MUTATED DEL PEAK  1(1P36.22) WILD-TYPE 
                          0.92                           0.03 
  DEL PEAK  1(1P36.22) MUTATED DEL PEAK  1(1P36.22) WILD-TYPE 
                         19.82                          49.38 
  DEL PEAK  1(1P36.22) MUTATED DEL PEAK  1(1P36.22) WILD-TYPE 
                          7.86                           5.19 
[1] "0.9 - 19.8 (7.9)" "0.0 - 49.4 (5.2)"
                    TCGA-F2-6879                     TCGA-F2-6880 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-HZ-7289                     TCGA-HZ-7918 
  "DEL PEAK  1(1P36.22) MUTATED"   "DEL PEAK  1(1P36.22) MUTATED" 
                    TCGA-HZ-7919                     TCGA-HZ-7922 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-HZ-7923                     TCGA-HZ-7924 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-HZ-7925                     TCGA-HZ-7926 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-HZ-8001                     TCGA-HZ-8002 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-HZ-8003                     TCGA-HZ-8005 
"DEL PEAK  1(1P36.22) WILD-TYPE"   "DEL PEAK  1(1P36.22) MUTATED" 
                    TCGA-HZ-8315                     TCGA-HZ-8317 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-HZ-8519                     TCGA-HZ-8636 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-HZ-8638                     TCGA-HZ-A49G 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-HZ-A49H                     TCGA-HZ-A4BH 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-HZ-A4BK                     TCGA-IB-7644 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-IB-7645                     TCGA-IB-7646 
"DEL PEAK  1(1P36.22) WILD-TYPE"   "DEL PEAK  1(1P36.22) MUTATED" 
                    TCGA-IB-7647                     TCGA-IB-7649 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-IB-7651                     TCGA-IB-7652 
  "DEL PEAK  1(1P36.22) MUTATED" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-IB-7885                     TCGA-IB-7886 
"DEL PEAK  1(1P36.22) WILD-TYPE"   "DEL PEAK  1(1P36.22) MUTATED" 
                    TCGA-IB-7887                     TCGA-IB-7888 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-IB-7889                     TCGA-IB-7890 
  "DEL PEAK  1(1P36.22) MUTATED" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-IB-7891                     TCGA-IB-7893 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-IB-7897                     TCGA-IB-8126 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-IB-8127                     TCGA-IB-A5SO 
  "DEL PEAK  1(1P36.22) MUTATED" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-IB-A5SP                     TCGA-IB-A5SQ 
  "DEL PEAK  1(1P36.22) MUTATED" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-IB-A5SS                     TCGA-IB-A5ST 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-F2-6879                     TCGA-F2-6880 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-HZ-7289                     TCGA-HZ-7918 
  "DEL PEAK  1(1P36.22) MUTATED"   "DEL PEAK  1(1P36.22) MUTATED" 
                    TCGA-HZ-7919                     TCGA-HZ-7922 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-HZ-7923                     TCGA-HZ-7924 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-HZ-7925                     TCGA-HZ-7926 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-HZ-8001                     TCGA-HZ-8002 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-HZ-8003                     TCGA-HZ-8005 
"DEL PEAK  1(1P36.22) WILD-TYPE"   "DEL PEAK  1(1P36.22) MUTATED" 
                    TCGA-HZ-8315                     TCGA-HZ-8317 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-HZ-8519                     TCGA-HZ-8636 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-HZ-8638                     TCGA-HZ-A49G 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-HZ-A49H                     TCGA-HZ-A4BH 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-HZ-A4BK                     TCGA-IB-7644 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-IB-7645                     TCGA-IB-7646 
"DEL PEAK  1(1P36.22) WILD-TYPE"   "DEL PEAK  1(1P36.22) MUTATED" 
                    TCGA-IB-7647                     TCGA-IB-7649 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-IB-7651                     TCGA-IB-7652 
  "DEL PEAK  1(1P36.22) MUTATED" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-IB-7885                     TCGA-IB-7886 
"DEL PEAK  1(1P36.22) WILD-TYPE"   "DEL PEAK  1(1P36.22) MUTATED" 
                    TCGA-IB-7887                     TCGA-IB-7888 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-IB-7889                     TCGA-IB-7890 
  "DEL PEAK  1(1P36.22) MUTATED" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-IB-7891                     TCGA-IB-7893 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-IB-7897                     TCGA-IB-8126 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-IB-8127                     TCGA-IB-A5SO 
  "DEL PEAK  1(1P36.22) MUTATED" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-IB-A5SP                     TCGA-IB-A5SQ 
  "DEL PEAK  1(1P36.22) MUTATED" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-IB-A5SS                     TCGA-IB-A5ST 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-F2-6879                     TCGA-F2-6880 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-HZ-7289                     TCGA-HZ-7918 
  "DEL PEAK  1(1P36.22) MUTATED"   "DEL PEAK  1(1P36.22) MUTATED" 
                    TCGA-HZ-7919                     TCGA-HZ-7922 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-HZ-7923                     TCGA-HZ-7924 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-HZ-7925                     TCGA-HZ-7926 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-HZ-8001                     TCGA-HZ-8002 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-HZ-8003                     TCGA-HZ-8005 
"DEL PEAK  1(1P36.22) WILD-TYPE"   "DEL PEAK  1(1P36.22) MUTATED" 
                    TCGA-HZ-8315                     TCGA-HZ-8317 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-HZ-8519                     TCGA-HZ-8636 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-HZ-8638                     TCGA-HZ-A49G 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-HZ-A49H                     TCGA-HZ-A4BH 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-HZ-A4BK                     TCGA-IB-7644 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-IB-7645                     TCGA-IB-7646 
"DEL PEAK  1(1P36.22) WILD-TYPE"   "DEL PEAK  1(1P36.22) MUTATED" 
                    TCGA-IB-7647                     TCGA-IB-7649 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-IB-7651                     TCGA-IB-7652 
  "DEL PEAK  1(1P36.22) MUTATED" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-IB-7885                     TCGA-IB-7886 
"DEL PEAK  1(1P36.22) WILD-TYPE"   "DEL PEAK  1(1P36.22) MUTATED" 
                    TCGA-IB-7887                     TCGA-IB-7888 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-IB-7889                     TCGA-IB-7890 
  "DEL PEAK  1(1P36.22) MUTATED" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-IB-7891                     TCGA-IB-7893 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-IB-7897                     TCGA-IB-8126 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-IB-8127                     TCGA-IB-A5SO 
  "DEL PEAK  1(1P36.22) MUTATED" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-IB-A5SP                     TCGA-IB-A5SQ 
  "DEL PEAK  1(1P36.22) MUTATED" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-IB-A5SS                     TCGA-IB-A5ST 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
[1] "hr=" "1.7"
D19V2, continuous
                                vv
clus                             STAGE IA STAGE IB STAGE IIA STAGE IIB
  DEL PEAK  1(1P36.22) MUTATED          0        0         1         8
  DEL PEAK  1(1P36.22) WILD-TYPE        2        3         6        33
                                vv
clus                             STAGE III STAGE IV
  DEL PEAK  1(1P36.22) MUTATED           0        0
  DEL PEAK  1(1P36.22) WILD-TYPE         2        2
D19V3, multiclass
                                vv
clus                             T1+T2 T3+T4
  DEL PEAK  1(1P36.22) MUTATED       0     9
  DEL PEAK  1(1P36.22) WILD-TYPE     6    42
D19V4, multiclass
       clus
vv      DEL PEAK  1(1P36.22) MUTATED DEL PEAK  1(1P36.22) WILD-TYPE
  T1+T2                            0                              6
  T3+T4                            9                             42
D19V5, binary
                                cls
clus                              0  1
  DEL PEAK  1(1P36.22) MUTATED    1  8
  DEL PEAK  1(1P36.22) WILD-TYPE 13 35
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  1(1P36.22) MUTATED      1    8
  DEL PEAK  1(1P36.22) WILD-TYPE   13   35
   clus
vv  DEL PEAK  1(1P36.22) MUTATED DEL PEAK  1(1P36.22) WILD-TYPE
  0                            1                             13
  1                            8                             35
                                vv
clus                             M0 M1 MX
  DEL PEAK  1(1P36.22) MUTATED    7  0  2
  DEL PEAK  1(1P36.22) WILD-TYPE 25  2 21
D19V6, multiclass
    clus
vv   DEL PEAK  1(1P36.22) MUTATED DEL PEAK  1(1P36.22) WILD-TYPE
  M0                            7                             25
  M1                            0                              2
  MX                            2                             21
D19V7, binary
                                cls
clus                              0  1
  DEL PEAK  1(1P36.22) MUTATED    2  7
  DEL PEAK  1(1P36.22) WILD-TYPE 29 19
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  1(1P36.22) MUTATED      2    7
  DEL PEAK  1(1P36.22) WILD-TYPE   29   19
        clus
vv       DEL PEAK  1(1P36.22) MUTATED DEL PEAK  1(1P36.22) WILD-TYPE
  FEMALE                            2                             29
  MALE                              7                             19
                                vv
clus                             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  DEL PEAK  1(1P36.22) MUTATED                                     8
  DEL PEAK  1(1P36.22) WILD-TYPE                                  43
                                vv
clus                             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  DEL PEAK  1(1P36.22) MUTATED                                       1
  DEL PEAK  1(1P36.22) WILD-TYPE                                     3
                                vv
clus                             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  DEL PEAK  1(1P36.22) MUTATED                                                  0
  DEL PEAK  1(1P36.22) WILD-TYPE                                                1
D19V8, multiclass
                                                  clus
vv                                                 DEL PEAK  1(1P36.22) MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                         8
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                       1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                            0
                                                  clus
vv                                                 DEL PEAK  1(1P36.22) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                          43
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                         3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                              1
D19V9, continuous
D19V10, continuous
                                vv
clus                             R0 R1 RX
  DEL PEAK  1(1P36.22) MUTATED    3  5  1
  DEL PEAK  1(1P36.22) WILD-TYPE 29 16  1
D19V11, multiclass
    clus
vv   DEL PEAK  1(1P36.22) MUTATED DEL PEAK  1(1P36.22) WILD-TYPE
  R0                            3                             29
  R1                            5                             16
  RX                            1                              1
D19V12, continuous

Clustering(20) Variable = DEL PEAK  2(1P36.11) MUTATION ANALYSIS
D20V1, survival
                                sevent
clus2                             0  1
  DEL PEAK  2(1P36.11) MUTATED    6  7
  DEL PEAK  2(1P36.11) WILD-TYPE 29 12
  DEL PEAK  2(1P36.11) MUTATED DEL PEAK  2(1P36.11) WILD-TYPE 
                            13                             41 
  DEL PEAK  2(1P36.11) MUTATED DEL PEAK  2(1P36.11) WILD-TYPE 
                             7                             12 
$`DEL PEAK  2(1P36.11) MUTATED`
TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7925 TCGA-HZ-8005 TCGA-IB-7646 TCGA-IB-7651 
        7.86         0.92        12.03         3.91         4.77        19.82 
TCGA-IB-7652 TCGA-IB-7886 TCGA-IB-7889 TCGA-IB-7893 TCGA-IB-8127 TCGA-IB-A5SP 
       15.65         4.04        15.78         3.85        17.13         9.83 
TCGA-IB-A5SS 
       15.12 

$`DEL PEAK  2(1P36.11) WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.96        11.84         7.07         5.03         5.19 
TCGA-FB-A4P5 TCGA-FB-A545 TCGA-H6-8124 TCGA-H6-A45N TCGA-HZ-7919 TCGA-HZ-7922 
        0.13         0.03        12.89         7.63         0.66         0.13 
TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 
        0.26        12.13         0.26         0.62         0.99         0.69 
TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G 
        0.92         0.49         0.10         0.16         2.96         0.76 
TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7647 
        1.02         5.98         1.51        11.41        49.38        21.86 
TCGA-IB-7649 TCGA-IB-7885 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7890 TCGA-IB-7891 
       15.35        27.98         3.58        43.79        19.66        16.04 
TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-A5SO TCGA-IB-A5SQ TCGA-IB-A5ST 
       15.95         0.56        10.82         7.20         0.26 

  DEL PEAK  2(1P36.11) MUTATED DEL PEAK  2(1P36.11) WILD-TYPE 
                          0.92                           0.03 
  DEL PEAK  2(1P36.11) MUTATED DEL PEAK  2(1P36.11) WILD-TYPE 
                         19.82                          49.38 
  DEL PEAK  2(1P36.11) MUTATED DEL PEAK  2(1P36.11) WILD-TYPE 
                          9.83                           5.03 
[1] "0.9 - 19.8 (9.8)" "0.0 - 49.4 (5.0)"
                    TCGA-F2-6879                     TCGA-F2-6880 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-HZ-7289                     TCGA-HZ-7918 
  "DEL PEAK  2(1P36.11) MUTATED"   "DEL PEAK  2(1P36.11) MUTATED" 
                    TCGA-HZ-7919                     TCGA-HZ-7922 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-HZ-7923                     TCGA-HZ-7924 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-HZ-7925                     TCGA-HZ-7926 
  "DEL PEAK  2(1P36.11) MUTATED" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-HZ-8001                     TCGA-HZ-8002 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-HZ-8003                     TCGA-HZ-8005 
"DEL PEAK  2(1P36.11) WILD-TYPE"   "DEL PEAK  2(1P36.11) MUTATED" 
                    TCGA-HZ-8315                     TCGA-HZ-8317 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-HZ-8519                     TCGA-HZ-8636 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-HZ-8638                     TCGA-HZ-A49G 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-HZ-A49H                     TCGA-HZ-A4BH 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-HZ-A4BK                     TCGA-IB-7644 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-IB-7645                     TCGA-IB-7646 
"DEL PEAK  2(1P36.11) WILD-TYPE"   "DEL PEAK  2(1P36.11) MUTATED" 
                    TCGA-IB-7647                     TCGA-IB-7649 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-IB-7651                     TCGA-IB-7652 
  "DEL PEAK  2(1P36.11) MUTATED"   "DEL PEAK  2(1P36.11) MUTATED" 
                    TCGA-IB-7885                     TCGA-IB-7886 
"DEL PEAK  2(1P36.11) WILD-TYPE"   "DEL PEAK  2(1P36.11) MUTATED" 
                    TCGA-IB-7887                     TCGA-IB-7888 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-IB-7889                     TCGA-IB-7890 
  "DEL PEAK  2(1P36.11) MUTATED" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-IB-7891                     TCGA-IB-7893 
"DEL PEAK  2(1P36.11) WILD-TYPE"   "DEL PEAK  2(1P36.11) MUTATED" 
                    TCGA-IB-7897                     TCGA-IB-8126 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-IB-8127                     TCGA-IB-A5SO 
  "DEL PEAK  2(1P36.11) MUTATED" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-IB-A5SP                     TCGA-IB-A5SQ 
  "DEL PEAK  2(1P36.11) MUTATED" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-IB-A5SS                     TCGA-IB-A5ST 
  "DEL PEAK  2(1P36.11) MUTATED" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-F2-6879                     TCGA-F2-6880 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-HZ-7289                     TCGA-HZ-7918 
  "DEL PEAK  2(1P36.11) MUTATED"   "DEL PEAK  2(1P36.11) MUTATED" 
                    TCGA-HZ-7919                     TCGA-HZ-7922 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-HZ-7923                     TCGA-HZ-7924 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-HZ-7925                     TCGA-HZ-7926 
  "DEL PEAK  2(1P36.11) MUTATED" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-HZ-8001                     TCGA-HZ-8002 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-HZ-8003                     TCGA-HZ-8005 
"DEL PEAK  2(1P36.11) WILD-TYPE"   "DEL PEAK  2(1P36.11) MUTATED" 
                    TCGA-HZ-8315                     TCGA-HZ-8317 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-HZ-8519                     TCGA-HZ-8636 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-HZ-8638                     TCGA-HZ-A49G 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-HZ-A49H                     TCGA-HZ-A4BH 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-HZ-A4BK                     TCGA-IB-7644 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-IB-7645                     TCGA-IB-7646 
"DEL PEAK  2(1P36.11) WILD-TYPE"   "DEL PEAK  2(1P36.11) MUTATED" 
                    TCGA-IB-7647                     TCGA-IB-7649 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-IB-7651                     TCGA-IB-7652 
  "DEL PEAK  2(1P36.11) MUTATED"   "DEL PEAK  2(1P36.11) MUTATED" 
                    TCGA-IB-7885                     TCGA-IB-7886 
"DEL PEAK  2(1P36.11) WILD-TYPE"   "DEL PEAK  2(1P36.11) MUTATED" 
                    TCGA-IB-7887                     TCGA-IB-7888 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-IB-7889                     TCGA-IB-7890 
  "DEL PEAK  2(1P36.11) MUTATED" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-IB-7891                     TCGA-IB-7893 
"DEL PEAK  2(1P36.11) WILD-TYPE"   "DEL PEAK  2(1P36.11) MUTATED" 
                    TCGA-IB-7897                     TCGA-IB-8126 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-IB-8127                     TCGA-IB-A5SO 
  "DEL PEAK  2(1P36.11) MUTATED" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-IB-A5SP                     TCGA-IB-A5SQ 
  "DEL PEAK  2(1P36.11) MUTATED" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-IB-A5SS                     TCGA-IB-A5ST 
  "DEL PEAK  2(1P36.11) MUTATED" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-F2-6879                     TCGA-F2-6880 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-HZ-7289                     TCGA-HZ-7918 
  "DEL PEAK  2(1P36.11) MUTATED"   "DEL PEAK  2(1P36.11) MUTATED" 
                    TCGA-HZ-7919                     TCGA-HZ-7922 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-HZ-7923                     TCGA-HZ-7924 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-HZ-7925                     TCGA-HZ-7926 
  "DEL PEAK  2(1P36.11) MUTATED" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-HZ-8001                     TCGA-HZ-8002 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-HZ-8003                     TCGA-HZ-8005 
"DEL PEAK  2(1P36.11) WILD-TYPE"   "DEL PEAK  2(1P36.11) MUTATED" 
                    TCGA-HZ-8315                     TCGA-HZ-8317 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-HZ-8519                     TCGA-HZ-8636 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-HZ-8638                     TCGA-HZ-A49G 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-HZ-A49H                     TCGA-HZ-A4BH 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-HZ-A4BK                     TCGA-IB-7644 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-IB-7645                     TCGA-IB-7646 
"DEL PEAK  2(1P36.11) WILD-TYPE"   "DEL PEAK  2(1P36.11) MUTATED" 
                    TCGA-IB-7647                     TCGA-IB-7649 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-IB-7651                     TCGA-IB-7652 
  "DEL PEAK  2(1P36.11) MUTATED"   "DEL PEAK  2(1P36.11) MUTATED" 
                    TCGA-IB-7885                     TCGA-IB-7886 
"DEL PEAK  2(1P36.11) WILD-TYPE"   "DEL PEAK  2(1P36.11) MUTATED" 
                    TCGA-IB-7887                     TCGA-IB-7888 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-IB-7889                     TCGA-IB-7890 
  "DEL PEAK  2(1P36.11) MUTATED" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-IB-7891                     TCGA-IB-7893 
"DEL PEAK  2(1P36.11) WILD-TYPE"   "DEL PEAK  2(1P36.11) MUTATED" 
                    TCGA-IB-7897                     TCGA-IB-8126 
"DEL PEAK  2(1P36.11) WILD-TYPE" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-IB-8127                     TCGA-IB-A5SO 
  "DEL PEAK  2(1P36.11) MUTATED" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-IB-A5SP                     TCGA-IB-A5SQ 
  "DEL PEAK  2(1P36.11) MUTATED" "DEL PEAK  2(1P36.11) WILD-TYPE" 
                    TCGA-IB-A5SS                     TCGA-IB-A5ST 
  "DEL PEAK  2(1P36.11) MUTATED" "DEL PEAK  2(1P36.11) WILD-TYPE" 
[1] "hr=" "1.8"
D20V2, continuous
                                vv
clus                             STAGE IA STAGE IB STAGE IIA STAGE IIB
  DEL PEAK  2(1P36.11) MUTATED          0        0         2        11
  DEL PEAK  2(1P36.11) WILD-TYPE        2        3         5        30
                                vv
clus                             STAGE III STAGE IV
  DEL PEAK  2(1P36.11) MUTATED           0        0
  DEL PEAK  2(1P36.11) WILD-TYPE         2        2
D20V3, multiclass
                                vv
clus                             T1+T2 T3+T4
  DEL PEAK  2(1P36.11) MUTATED       0    13
  DEL PEAK  2(1P36.11) WILD-TYPE     6    38
D20V4, multiclass
       clus
vv      DEL PEAK  2(1P36.11) MUTATED DEL PEAK  2(1P36.11) WILD-TYPE
  T1+T2                            0                              6
  T3+T4                           13                             38
D20V5, binary
                                cls
clus                              0  1
  DEL PEAK  2(1P36.11) MUTATED    2 11
  DEL PEAK  2(1P36.11) WILD-TYPE 12 32
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  2(1P36.11) MUTATED      2   11
  DEL PEAK  2(1P36.11) WILD-TYPE   12   32
   clus
vv  DEL PEAK  2(1P36.11) MUTATED DEL PEAK  2(1P36.11) WILD-TYPE
  0                            2                             12
  1                           11                             32
                                vv
clus                             M0 M1 MX
  DEL PEAK  2(1P36.11) MUTATED   10  0  3
  DEL PEAK  2(1P36.11) WILD-TYPE 22  2 20
D20V6, multiclass
    clus
vv   DEL PEAK  2(1P36.11) MUTATED DEL PEAK  2(1P36.11) WILD-TYPE
  M0                           10                             22
  M1                            0                              2
  MX                            3                             20
D20V7, binary
                                cls
clus                              0  1
  DEL PEAK  2(1P36.11) MUTATED    4  9
  DEL PEAK  2(1P36.11) WILD-TYPE 27 17
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  2(1P36.11) MUTATED      4    9
  DEL PEAK  2(1P36.11) WILD-TYPE   27   17
        clus
vv       DEL PEAK  2(1P36.11) MUTATED DEL PEAK  2(1P36.11) WILD-TYPE
  FEMALE                            4                             27
  MALE                              9                             17
                                vv
clus                             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  DEL PEAK  2(1P36.11) MUTATED                                    12
  DEL PEAK  2(1P36.11) WILD-TYPE                                  39
                                vv
clus                             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  DEL PEAK  2(1P36.11) MUTATED                                       1
  DEL PEAK  2(1P36.11) WILD-TYPE                                     3
                                vv
clus                             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  DEL PEAK  2(1P36.11) MUTATED                                                  0
  DEL PEAK  2(1P36.11) WILD-TYPE                                                1
D20V8, multiclass
                                                  clus
vv                                                 DEL PEAK  2(1P36.11) MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                        12
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                       1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                            0
                                                  clus
vv                                                 DEL PEAK  2(1P36.11) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                          39
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                         3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                              1
D20V9, continuous
D20V10, continuous
                                vv
clus                             R0 R1 RX
  DEL PEAK  2(1P36.11) MUTATED    6  6  1
  DEL PEAK  2(1P36.11) WILD-TYPE 26 15  1
D20V11, multiclass
    clus
vv   DEL PEAK  2(1P36.11) MUTATED DEL PEAK  2(1P36.11) WILD-TYPE
  R0                            6                             26
  R1                            6                             15
  RX                            1                              1
D20V12, continuous

Clustering(21) Variable = DEL PEAK  3(1P21.2) MUTATION ANALYSIS
D21V1, survival
                               sevent
clus2                            0  1
  DEL PEAK  3(1P21.2) MUTATED    4  5
  DEL PEAK  3(1P21.2) WILD-TYPE 31 14
  DEL PEAK  3(1P21.2) MUTATED DEL PEAK  3(1P21.2) WILD-TYPE 
                            9                            45 
  DEL PEAK  3(1P21.2) MUTATED DEL PEAK  3(1P21.2) WILD-TYPE 
                            5                            14 
$`DEL PEAK  3(1P21.2) MUTATED`
TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-8005 TCGA-IB-7646 TCGA-IB-7651 TCGA-IB-7652 
        7.86         0.92         3.91         4.77        19.82        15.65 
TCGA-IB-7886 TCGA-IB-8127 TCGA-IB-A5SS 
        4.04        17.13        15.12 

$`DEL PEAK  3(1P21.2) WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.96        11.84         7.07         5.03         5.19 
TCGA-FB-A4P5 TCGA-FB-A545 TCGA-H6-8124 TCGA-H6-A45N TCGA-HZ-7919 TCGA-HZ-7922 
        0.13         0.03        12.89         7.63         0.66         0.13 
TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 
        0.26        12.13        12.03         0.26         0.62         0.99 
TCGA-HZ-8003 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8636 TCGA-HZ-8638 
        0.69         0.92         0.49         0.10         0.16         2.96 
TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 
        0.76         1.02         5.98         1.51        11.41        49.38 
TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7885 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 
       21.86        15.35        27.98         3.58        43.79        15.78 
TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-A5SO 
       19.66        16.04         3.85        15.95         0.56        10.82 
TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5ST 
        9.83         7.20         0.26 

  DEL PEAK  3(1P21.2) MUTATED DEL PEAK  3(1P21.2) WILD-TYPE 
                         0.92                          0.03 
  DEL PEAK  3(1P21.2) MUTATED DEL PEAK  3(1P21.2) WILD-TYPE 
                        19.82                         49.38 
  DEL PEAK  3(1P21.2) MUTATED DEL PEAK  3(1P21.2) WILD-TYPE 
                         7.86                          5.19 
[1] "0.9 - 19.8 (7.9)" "0.0 - 49.4 (5.2)"
                   TCGA-F2-6879                    TCGA-F2-6880 
"DEL PEAK  3(1P21.2) WILD-TYPE" "DEL PEAK  3(1P21.2) WILD-TYPE" 
                   TCGA-F2-7273                    TCGA-F2-7276 
"DEL PEAK  3(1P21.2) WILD-TYPE" "DEL PEAK  3(1P21.2) WILD-TYPE" 
                   TCGA-F2-A44G                    TCGA-F2-A44H 
"DEL PEAK  3(1P21.2) WILD-TYPE" "DEL PEAK  3(1P21.2) WILD-TYPE" 
                   TCGA-FB-A4P5                    TCGA-FB-A545 
"DEL PEAK  3(1P21.2) WILD-TYPE" "DEL PEAK  3(1P21.2) WILD-TYPE" 
                   TCGA-H6-8124                    TCGA-H6-A45N 
"DEL PEAK  3(1P21.2) WILD-TYPE" "DEL PEAK  3(1P21.2) WILD-TYPE" 
                   TCGA-HZ-7289                    TCGA-HZ-7918 
  "DEL PEAK  3(1P21.2) MUTATED"   "DEL PEAK  3(1P21.2) MUTATED" 
                   TCGA-HZ-7919                    TCGA-HZ-7922 
"DEL PEAK  3(1P21.2) WILD-TYPE" "DEL PEAK  3(1P21.2) WILD-TYPE" 
                   TCGA-HZ-7923                    TCGA-HZ-7924 
"DEL PEAK  3(1P21.2) WILD-TYPE" "DEL PEAK  3(1P21.2) WILD-TYPE" 
                   TCGA-HZ-7925                    TCGA-HZ-7926 
"DEL PEAK  3(1P21.2) WILD-TYPE" "DEL PEAK  3(1P21.2) WILD-TYPE" 
                   TCGA-HZ-8001                    TCGA-HZ-8002 
"DEL PEAK  3(1P21.2) WILD-TYPE" "DEL PEAK  3(1P21.2) WILD-TYPE" 
                   TCGA-HZ-8003                    TCGA-HZ-8005 
"DEL PEAK  3(1P21.2) WILD-TYPE"   "DEL PEAK  3(1P21.2) MUTATED" 
                   TCGA-HZ-8315                    TCGA-HZ-8317 
"DEL PEAK  3(1P21.2) WILD-TYPE" "DEL PEAK  3(1P21.2) WILD-TYPE" 
                   TCGA-HZ-8519                    TCGA-HZ-8636 
"DEL PEAK  3(1P21.2) WILD-TYPE" "DEL PEAK  3(1P21.2) WILD-TYPE" 
                   TCGA-HZ-8638                    TCGA-HZ-A49G 
"DEL PEAK  3(1P21.2) WILD-TYPE" "DEL PEAK  3(1P21.2) WILD-TYPE" 
                   TCGA-HZ-A49H                    TCGA-HZ-A4BH 
"DEL PEAK  3(1P21.2) WILD-TYPE" "DEL PEAK  3(1P21.2) WILD-TYPE" 
                   TCGA-HZ-A4BK                    TCGA-IB-7644 
"DEL PEAK  3(1P21.2) WILD-TYPE" "DEL PEAK  3(1P21.2) WILD-TYPE" 
                   TCGA-IB-7645                    TCGA-IB-7646 
"DEL PEAK  3(1P21.2) WILD-TYPE"   "DEL PEAK  3(1P21.2) MUTATED" 
                   TCGA-IB-7647                    TCGA-IB-7649 
"DEL PEAK  3(1P21.2) WILD-TYPE" "DEL PEAK  3(1P21.2) WILD-TYPE" 
                   TCGA-IB-7651                    TCGA-IB-7652 
  "DEL PEAK  3(1P21.2) MUTATED"   "DEL PEAK  3(1P21.2) MUTATED" 
                   TCGA-IB-7885                    TCGA-IB-7886 
"DEL PEAK  3(1P21.2) WILD-TYPE"   "DEL PEAK  3(1P21.2) MUTATED" 
                   TCGA-IB-7887                    TCGA-IB-7888 
"DEL PEAK  3(1P21.2) WILD-TYPE" "DEL PEAK  3(1P21.2) WILD-TYPE" 
                   TCGA-IB-7889                    TCGA-IB-7890 
"DEL PEAK  3(1P21.2) WILD-TYPE" "DEL PEAK  3(1P21.2) WILD-TYPE" 
                   TCGA-IB-7891                    TCGA-IB-7893 
"DEL PEAK  3(1P21.2) WILD-TYPE" "DEL PEAK  3(1P21.2) WILD-TYPE" 
                   TCGA-IB-7897                    TCGA-IB-8126 
"DEL PEAK  3(1P21.2) WILD-TYPE" "DEL PEAK  3(1P21.2) WILD-TYPE" 
                   TCGA-IB-8127                    TCGA-IB-A5SO 
  "DEL PEAK  3(1P21.2) MUTATED" "DEL PEAK  3(1P21.2) WILD-TYPE" 
                   TCGA-IB-A5SP                    TCGA-IB-A5SQ 
"DEL PEAK  3(1P21.2) WILD-TYPE" "DEL PEAK  3(1P21.2) WILD-TYPE" 
                   TCGA-IB-A5SS                    TCGA-IB-A5ST 
  "DEL PEAK  3(1P21.2) MUTATED" "DEL PEAK  3(1P21.2) WILD-TYPE" 
                   TCGA-F2-6879                    TCGA-F2-6880 
"DEL PEAK  3(1P21.2) WILD-TYPE" "DEL PEAK  3(1P21.2) WILD-TYPE" 
                   TCGA-F2-7273                    TCGA-F2-7276 
"DEL PEAK  3(1P21.2) WILD-TYPE" "DEL PEAK  3(1P21.2) WILD-TYPE" 
                   TCGA-F2-A44G                    TCGA-F2-A44H 
"DEL PEAK  3(1P21.2) WILD-TYPE" "DEL PEAK  3(1P21.2) WILD-TYPE" 
                   TCGA-FB-A4P5                    TCGA-FB-A545 
"DEL PEAK  3(1P21.2) WILD-TYPE" "DEL PEAK  3(1P21.2) WILD-TYPE" 
                   TCGA-H6-8124                    TCGA-H6-A45N 
"DEL PEAK  3(1P21.2) WILD-TYPE" "DEL PEAK  3(1P21.2) WILD-TYPE" 
                   TCGA-HZ-7289                    TCGA-HZ-7918 
  "DEL PEAK  3(1P21.2) MUTATED"   "DEL PEAK  3(1P21.2) MUTATED" 
                   TCGA-HZ-7919                    TCGA-HZ-7922 
"DEL PEAK  3(1P21.2) WILD-TYPE" "DEL PEAK  3(1P21.2) WILD-TYPE" 
                   TCGA-HZ-7923                    TCGA-HZ-7924 
"DEL PEAK  3(1P21.2) WILD-TYPE" "DEL PEAK  3(1P21.2) WILD-TYPE" 
                   TCGA-HZ-7925                    TCGA-HZ-7926 
"DEL PEAK  3(1P21.2) WILD-TYPE" "DEL PEAK  3(1P21.2) WILD-TYPE" 
                   TCGA-HZ-8001                    TCGA-HZ-8002 
"DEL PEAK  3(1P21.2) WILD-TYPE" "DEL PEAK  3(1P21.2) WILD-TYPE" 
                   TCGA-HZ-8003                    TCGA-HZ-8005 
"DEL PEAK  3(1P21.2) WILD-TYPE"   "DEL PEAK  3(1P21.2) MUTATED" 
                   TCGA-HZ-8315                    TCGA-HZ-8317 
"DEL PEAK  3(1P21.2) WILD-TYPE" "DEL PEAK  3(1P21.2) WILD-TYPE" 
                   TCGA-HZ-8519                    TCGA-HZ-8636 
"DEL PEAK  3(1P21.2) WILD-TYPE" "DEL PEAK  3(1P21.2) WILD-TYPE" 
                   TCGA-HZ-8638                    TCGA-HZ-A49G 
"DEL PEAK  3(1P21.2) WILD-TYPE" "DEL PEAK  3(1P21.2) WILD-TYPE" 
                   TCGA-HZ-A49H                    TCGA-HZ-A4BH 
"DEL PEAK  3(1P21.2) WILD-TYPE" "DEL PEAK  3(1P21.2) WILD-TYPE" 
                   TCGA-HZ-A4BK                    TCGA-IB-7644 
"DEL PEAK  3(1P21.2) WILD-TYPE" "DEL PEAK  3(1P21.2) WILD-TYPE" 
                   TCGA-IB-7645                    TCGA-IB-7646 
"DEL PEAK  3(1P21.2) WILD-TYPE"   "DEL PEAK  3(1P21.2) MUTATED" 
                   TCGA-IB-7647                    TCGA-IB-7649 
"DEL PEAK  3(1P21.2) WILD-TYPE" "DEL PEAK  3(1P21.2) WILD-TYPE" 
                   TCGA-IB-7651                    TCGA-IB-7652 
  "DEL PEAK  3(1P21.2) MUTATED"   "DEL PEAK  3(1P21.2) MUTATED" 
                   TCGA-IB-7885                    TCGA-IB-7886 
"DEL PEAK  3(1P21.2) WILD-TYPE"   "DEL PEAK  3(1P21.2) MUTATED" 
                   TCGA-IB-7887                    TCGA-IB-7888 
"DEL PEAK  3(1P21.2) WILD-TYPE" "DEL PEAK  3(1P21.2) WILD-TYPE" 
                   TCGA-IB-7889                    TCGA-IB-7890 
"DEL PEAK  3(1P21.2) WILD-TYPE" "DEL PEAK  3(1P21.2) WILD-TYPE" 
                   TCGA-IB-7891                    TCGA-IB-7893 
"DEL PEAK  3(1P21.2) WILD-TYPE" "DEL PEAK  3(1P21.2) WILD-TYPE" 
                   TCGA-IB-7897                    TCGA-IB-8126 
"DEL PEAK  3(1P21.2) WILD-TYPE" "DEL PEAK  3(1P21.2) WILD-TYPE" 
                   TCGA-IB-8127                    TCGA-IB-A5SO 
  "DEL PEAK  3(1P21.2) MUTATED" "DEL PEAK  3(1P21.2) WILD-TYPE" 
                   TCGA-IB-A5SP                    TCGA-IB-A5SQ 
"DEL PEAK  3(1P21.2) WILD-TYPE" "DEL PEAK  3(1P21.2) WILD-TYPE" 
                   TCGA-IB-A5SS                    TCGA-IB-A5ST 
  "DEL PEAK  3(1P21.2) MUTATED" "DEL PEAK  3(1P21.2) WILD-TYPE" 
                   TCGA-F2-6879                    TCGA-F2-6880 
"DEL PEAK  3(1P21.2) WILD-TYPE" "DEL PEAK  3(1P21.2) WILD-TYPE" 
                   TCGA-F2-7273                    TCGA-F2-7276 
"DEL PEAK  3(1P21.2) WILD-TYPE" "DEL PEAK  3(1P21.2) WILD-TYPE" 
                   TCGA-F2-A44G                    TCGA-F2-A44H 
"DEL PEAK  3(1P21.2) WILD-TYPE" "DEL PEAK  3(1P21.2) WILD-TYPE" 
                   TCGA-FB-A4P5                    TCGA-FB-A545 
"DEL PEAK  3(1P21.2) WILD-TYPE" "DEL PEAK  3(1P21.2) WILD-TYPE" 
                   TCGA-H6-8124                    TCGA-H6-A45N 
"DEL PEAK  3(1P21.2) WILD-TYPE" "DEL PEAK  3(1P21.2) WILD-TYPE" 
                   TCGA-HZ-7289                    TCGA-HZ-7918 
  "DEL PEAK  3(1P21.2) MUTATED"   "DEL PEAK  3(1P21.2) MUTATED" 
                   TCGA-HZ-7919                    TCGA-HZ-7922 
"DEL PEAK  3(1P21.2) WILD-TYPE" "DEL PEAK  3(1P21.2) WILD-TYPE" 
                   TCGA-HZ-7923                    TCGA-HZ-7924 
"DEL PEAK  3(1P21.2) WILD-TYPE" "DEL PEAK  3(1P21.2) WILD-TYPE" 
                   TCGA-HZ-7925                    TCGA-HZ-7926 
"DEL PEAK  3(1P21.2) WILD-TYPE" "DEL PEAK  3(1P21.2) WILD-TYPE" 
                   TCGA-HZ-8001                    TCGA-HZ-8002 
"DEL PEAK  3(1P21.2) WILD-TYPE" "DEL PEAK  3(1P21.2) WILD-TYPE" 
                   TCGA-HZ-8003                    TCGA-HZ-8005 
"DEL PEAK  3(1P21.2) WILD-TYPE"   "DEL PEAK  3(1P21.2) MUTATED" 
                   TCGA-HZ-8315                    TCGA-HZ-8317 
"DEL PEAK  3(1P21.2) WILD-TYPE" "DEL PEAK  3(1P21.2) WILD-TYPE" 
                   TCGA-HZ-8519                    TCGA-HZ-8636 
"DEL PEAK  3(1P21.2) WILD-TYPE" "DEL PEAK  3(1P21.2) WILD-TYPE" 
                   TCGA-HZ-8638                    TCGA-HZ-A49G 
"DEL PEAK  3(1P21.2) WILD-TYPE" "DEL PEAK  3(1P21.2) WILD-TYPE" 
                   TCGA-HZ-A49H                    TCGA-HZ-A4BH 
"DEL PEAK  3(1P21.2) WILD-TYPE" "DEL PEAK  3(1P21.2) WILD-TYPE" 
                   TCGA-HZ-A4BK                    TCGA-IB-7644 
"DEL PEAK  3(1P21.2) WILD-TYPE" "DEL PEAK  3(1P21.2) WILD-TYPE" 
                   TCGA-IB-7645                    TCGA-IB-7646 
"DEL PEAK  3(1P21.2) WILD-TYPE"   "DEL PEAK  3(1P21.2) MUTATED" 
                   TCGA-IB-7647                    TCGA-IB-7649 
"DEL PEAK  3(1P21.2) WILD-TYPE" "DEL PEAK  3(1P21.2) WILD-TYPE" 
                   TCGA-IB-7651                    TCGA-IB-7652 
  "DEL PEAK  3(1P21.2) MUTATED"   "DEL PEAK  3(1P21.2) MUTATED" 
                   TCGA-IB-7885                    TCGA-IB-7886 
"DEL PEAK  3(1P21.2) WILD-TYPE"   "DEL PEAK  3(1P21.2) MUTATED" 
                   TCGA-IB-7887                    TCGA-IB-7888 
"DEL PEAK  3(1P21.2) WILD-TYPE" "DEL PEAK  3(1P21.2) WILD-TYPE" 
                   TCGA-IB-7889                    TCGA-IB-7890 
"DEL PEAK  3(1P21.2) WILD-TYPE" "DEL PEAK  3(1P21.2) WILD-TYPE" 
                   TCGA-IB-7891                    TCGA-IB-7893 
"DEL PEAK  3(1P21.2) WILD-TYPE" "DEL PEAK  3(1P21.2) WILD-TYPE" 
                   TCGA-IB-7897                    TCGA-IB-8126 
"DEL PEAK  3(1P21.2) WILD-TYPE" "DEL PEAK  3(1P21.2) WILD-TYPE" 
                   TCGA-IB-8127                    TCGA-IB-A5SO 
  "DEL PEAK  3(1P21.2) MUTATED" "DEL PEAK  3(1P21.2) WILD-TYPE" 
                   TCGA-IB-A5SP                    TCGA-IB-A5SQ 
"DEL PEAK  3(1P21.2) WILD-TYPE" "DEL PEAK  3(1P21.2) WILD-TYPE" 
                   TCGA-IB-A5SS                    TCGA-IB-A5ST 
  "DEL PEAK  3(1P21.2) MUTATED" "DEL PEAK  3(1P21.2) WILD-TYPE" 
[1] "hr=" "1.6"
D21V2, continuous
                               vv
clus                            STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III
  DEL PEAK  3(1P21.2) MUTATED          0        0         0         9         0
  DEL PEAK  3(1P21.2) WILD-TYPE        2        3         7        32         2
                               vv
clus                            STAGE IV
  DEL PEAK  3(1P21.2) MUTATED          0
  DEL PEAK  3(1P21.2) WILD-TYPE        2
D21V3, multiclass
                               vv
clus                            T1+T2 T3+T4
  DEL PEAK  3(1P21.2) MUTATED       0     9
  DEL PEAK  3(1P21.2) WILD-TYPE     6    42
D21V4, multiclass
       clus
vv      DEL PEAK  3(1P21.2) MUTATED DEL PEAK  3(1P21.2) WILD-TYPE
  T1+T2                           0                             6
  T3+T4                           9                            42
D21V5, binary
                               cls
clus                             0  1
  DEL PEAK  3(1P21.2) MUTATED    0  9
  DEL PEAK  3(1P21.2) WILD-TYPE 14 34
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  3(1P21.2) MUTATED      0    9
  DEL PEAK  3(1P21.2) WILD-TYPE   14   34
   clus
vv  DEL PEAK  3(1P21.2) MUTATED DEL PEAK  3(1P21.2) WILD-TYPE
  0                           0                            14
  1                           9                            34
                               vv
clus                            M0 M1 MX
  DEL PEAK  3(1P21.2) MUTATED    7  0  2
  DEL PEAK  3(1P21.2) WILD-TYPE 25  2 21
D21V6, multiclass
    clus
vv   DEL PEAK  3(1P21.2) MUTATED DEL PEAK  3(1P21.2) WILD-TYPE
  M0                           7                            25
  M1                           0                             2
  MX                           2                            21
D21V7, binary
                               cls
clus                             0  1
  DEL PEAK  3(1P21.2) MUTATED    3  6
  DEL PEAK  3(1P21.2) WILD-TYPE 28 20
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  3(1P21.2) MUTATED      3    6
  DEL PEAK  3(1P21.2) WILD-TYPE   28   20
        clus
vv       DEL PEAK  3(1P21.2) MUTATED DEL PEAK  3(1P21.2) WILD-TYPE
  FEMALE                           3                            28
  MALE                             6                            20
                               vv
clus                            PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  DEL PEAK  3(1P21.2) MUTATED                                     8
  DEL PEAK  3(1P21.2) WILD-TYPE                                  43
                               vv
clus                            PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  DEL PEAK  3(1P21.2) MUTATED                                       1
  DEL PEAK  3(1P21.2) WILD-TYPE                                     3
                               vv
clus                            PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  DEL PEAK  3(1P21.2) MUTATED                                                  0
  DEL PEAK  3(1P21.2) WILD-TYPE                                                1
D21V8, multiclass
                                                  clus
vv                                                 DEL PEAK  3(1P21.2) MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                        8
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                      1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                           0
                                                  clus
vv                                                 DEL PEAK  3(1P21.2) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                         43
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                        3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                             1
D21V9, continuous
D21V10, continuous
                               vv
clus                            R0 R1 RX
  DEL PEAK  3(1P21.2) MUTATED    3  5  1
  DEL PEAK  3(1P21.2) WILD-TYPE 29 16  1
D21V11, multiclass
    clus
vv   DEL PEAK  3(1P21.2) MUTATED DEL PEAK  3(1P21.2) WILD-TYPE
  R0                           3                            29
  R1                           5                            16
  RX                           1                             1
D21V12, continuous

Clustering(22) Variable = DEL PEAK  4(2P23.3) MUTATION ANALYSIS
D22V1, survival
                               sevent
clus2                            0  1
  DEL PEAK  4(2P23.3) MUTATED    3  4
  DEL PEAK  4(2P23.3) WILD-TYPE 32 15
  DEL PEAK  4(2P23.3) MUTATED DEL PEAK  4(2P23.3) WILD-TYPE 
                            7                            47 
  DEL PEAK  4(2P23.3) MUTATED DEL PEAK  4(2P23.3) WILD-TYPE 
                            4                            15 
$`DEL PEAK  4(2P23.3) MUTATED`
TCGA-H6-8124 TCGA-HZ-7289 TCGA-IB-7646 TCGA-IB-7652 TCGA-IB-7887 TCGA-IB-7888 
       12.89         7.86         4.77        15.65         3.58        43.79 
TCGA-IB-7890 
       19.66 

$`DEL PEAK  4(2P23.3) WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.96        11.84         7.07         5.03         5.19 
TCGA-FB-A4P5 TCGA-FB-A545 TCGA-H6-A45N TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 
        0.13         0.03         7.63         0.92         0.66         0.13 
TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 
        0.26        12.13        12.03         0.26         0.62         0.99 
TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8636 
        0.69         3.91         0.92         0.49         0.10         0.16 
TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 
        2.96         0.76         1.02         5.98         1.51        11.41 
TCGA-IB-7645 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7885 TCGA-IB-7886 
       49.38        21.86        15.35        19.82        27.98         4.04 
TCGA-IB-7889 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 
       15.78        16.04         3.85        15.95         0.56        17.13 
TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST 
       10.82         9.83         7.20        15.12         0.26 

  DEL PEAK  4(2P23.3) MUTATED DEL PEAK  4(2P23.3) WILD-TYPE 
                         3.58                          0.03 
  DEL PEAK  4(2P23.3) MUTATED DEL PEAK  4(2P23.3) WILD-TYPE 
                        43.79                         49.38 
  DEL PEAK  4(2P23.3) MUTATED DEL PEAK  4(2P23.3) WILD-TYPE 
                        12.89                          5.03 
[1] "3.6 - 43.8 (12.9)" "0.0 - 49.4 (5.0)" 
                   TCGA-F2-6879                    TCGA-F2-6880 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-F2-7273                    TCGA-F2-7276 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-F2-A44G                    TCGA-F2-A44H 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-FB-A4P5                    TCGA-FB-A545 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-H6-8124                    TCGA-H6-A45N 
  "DEL PEAK  4(2P23.3) MUTATED" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-HZ-7289                    TCGA-HZ-7918 
  "DEL PEAK  4(2P23.3) MUTATED" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-HZ-7919                    TCGA-HZ-7922 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-HZ-7923                    TCGA-HZ-7924 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-HZ-7925                    TCGA-HZ-7926 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-HZ-8001                    TCGA-HZ-8002 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-HZ-8003                    TCGA-HZ-8005 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-HZ-8315                    TCGA-HZ-8317 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-HZ-8519                    TCGA-HZ-8636 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-HZ-8638                    TCGA-HZ-A49G 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-HZ-A49H                    TCGA-HZ-A4BH 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-HZ-A4BK                    TCGA-IB-7644 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-IB-7645                    TCGA-IB-7646 
"DEL PEAK  4(2P23.3) WILD-TYPE"   "DEL PEAK  4(2P23.3) MUTATED" 
                   TCGA-IB-7647                    TCGA-IB-7649 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-IB-7651                    TCGA-IB-7652 
"DEL PEAK  4(2P23.3) WILD-TYPE"   "DEL PEAK  4(2P23.3) MUTATED" 
                   TCGA-IB-7885                    TCGA-IB-7886 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-IB-7887                    TCGA-IB-7888 
  "DEL PEAK  4(2P23.3) MUTATED"   "DEL PEAK  4(2P23.3) MUTATED" 
                   TCGA-IB-7889                    TCGA-IB-7890 
"DEL PEAK  4(2P23.3) WILD-TYPE"   "DEL PEAK  4(2P23.3) MUTATED" 
                   TCGA-IB-7891                    TCGA-IB-7893 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-IB-7897                    TCGA-IB-8126 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-IB-8127                    TCGA-IB-A5SO 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-IB-A5SP                    TCGA-IB-A5SQ 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-IB-A5SS                    TCGA-IB-A5ST 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-F2-6879                    TCGA-F2-6880 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-F2-7273                    TCGA-F2-7276 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-F2-A44G                    TCGA-F2-A44H 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-FB-A4P5                    TCGA-FB-A545 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-H6-8124                    TCGA-H6-A45N 
  "DEL PEAK  4(2P23.3) MUTATED" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-HZ-7289                    TCGA-HZ-7918 
  "DEL PEAK  4(2P23.3) MUTATED" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-HZ-7919                    TCGA-HZ-7922 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-HZ-7923                    TCGA-HZ-7924 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-HZ-7925                    TCGA-HZ-7926 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-HZ-8001                    TCGA-HZ-8002 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-HZ-8003                    TCGA-HZ-8005 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-HZ-8315                    TCGA-HZ-8317 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-HZ-8519                    TCGA-HZ-8636 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-HZ-8638                    TCGA-HZ-A49G 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-HZ-A49H                    TCGA-HZ-A4BH 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-HZ-A4BK                    TCGA-IB-7644 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-IB-7645                    TCGA-IB-7646 
"DEL PEAK  4(2P23.3) WILD-TYPE"   "DEL PEAK  4(2P23.3) MUTATED" 
                   TCGA-IB-7647                    TCGA-IB-7649 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-IB-7651                    TCGA-IB-7652 
"DEL PEAK  4(2P23.3) WILD-TYPE"   "DEL PEAK  4(2P23.3) MUTATED" 
                   TCGA-IB-7885                    TCGA-IB-7886 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-IB-7887                    TCGA-IB-7888 
  "DEL PEAK  4(2P23.3) MUTATED"   "DEL PEAK  4(2P23.3) MUTATED" 
                   TCGA-IB-7889                    TCGA-IB-7890 
"DEL PEAK  4(2P23.3) WILD-TYPE"   "DEL PEAK  4(2P23.3) MUTATED" 
                   TCGA-IB-7891                    TCGA-IB-7893 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-IB-7897                    TCGA-IB-8126 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-IB-8127                    TCGA-IB-A5SO 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-IB-A5SP                    TCGA-IB-A5SQ 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-IB-A5SS                    TCGA-IB-A5ST 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-F2-6879                    TCGA-F2-6880 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-F2-7273                    TCGA-F2-7276 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-F2-A44G                    TCGA-F2-A44H 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-FB-A4P5                    TCGA-FB-A545 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-H6-8124                    TCGA-H6-A45N 
  "DEL PEAK  4(2P23.3) MUTATED" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-HZ-7289                    TCGA-HZ-7918 
  "DEL PEAK  4(2P23.3) MUTATED" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-HZ-7919                    TCGA-HZ-7922 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-HZ-7923                    TCGA-HZ-7924 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-HZ-7925                    TCGA-HZ-7926 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-HZ-8001                    TCGA-HZ-8002 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-HZ-8003                    TCGA-HZ-8005 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-HZ-8315                    TCGA-HZ-8317 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-HZ-8519                    TCGA-HZ-8636 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-HZ-8638                    TCGA-HZ-A49G 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-HZ-A49H                    TCGA-HZ-A4BH 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-HZ-A4BK                    TCGA-IB-7644 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-IB-7645                    TCGA-IB-7646 
"DEL PEAK  4(2P23.3) WILD-TYPE"   "DEL PEAK  4(2P23.3) MUTATED" 
                   TCGA-IB-7647                    TCGA-IB-7649 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-IB-7651                    TCGA-IB-7652 
"DEL PEAK  4(2P23.3) WILD-TYPE"   "DEL PEAK  4(2P23.3) MUTATED" 
                   TCGA-IB-7885                    TCGA-IB-7886 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-IB-7887                    TCGA-IB-7888 
  "DEL PEAK  4(2P23.3) MUTATED"   "DEL PEAK  4(2P23.3) MUTATED" 
                   TCGA-IB-7889                    TCGA-IB-7890 
"DEL PEAK  4(2P23.3) WILD-TYPE"   "DEL PEAK  4(2P23.3) MUTATED" 
                   TCGA-IB-7891                    TCGA-IB-7893 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-IB-7897                    TCGA-IB-8126 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-IB-8127                    TCGA-IB-A5SO 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-IB-A5SP                    TCGA-IB-A5SQ 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-IB-A5SS                    TCGA-IB-A5ST 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
[1] "hr=" "1.1"
D22V2, continuous
                               vv
clus                            STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III
  DEL PEAK  4(2P23.3) MUTATED          0        1         1         6         0
  DEL PEAK  4(2P23.3) WILD-TYPE        2        2         6        35         2
                               vv
clus                            STAGE IV
  DEL PEAK  4(2P23.3) MUTATED          0
  DEL PEAK  4(2P23.3) WILD-TYPE        2
D22V3, multiclass
                               vv
clus                            T1+T2 T3+T4
  DEL PEAK  4(2P23.3) MUTATED       1     7
  DEL PEAK  4(2P23.3) WILD-TYPE     5    44
D22V4, multiclass
       clus
vv      DEL PEAK  4(2P23.3) MUTATED DEL PEAK  4(2P23.3) WILD-TYPE
  T1+T2                           1                             5
  T3+T4                           7                            44
D22V5, binary
                               cls
clus                             0  1
  DEL PEAK  4(2P23.3) MUTATED    2  6
  DEL PEAK  4(2P23.3) WILD-TYPE 12 37
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  4(2P23.3) MUTATED      2    6
  DEL PEAK  4(2P23.3) WILD-TYPE   12   37
   clus
vv  DEL PEAK  4(2P23.3) MUTATED DEL PEAK  4(2P23.3) WILD-TYPE
  0                           2                            12
  1                           6                            37
                               vv
clus                            M0 M1 MX
  DEL PEAK  4(2P23.3) MUTATED    6  0  2
  DEL PEAK  4(2P23.3) WILD-TYPE 26  2 21
D22V6, multiclass
    clus
vv   DEL PEAK  4(2P23.3) MUTATED DEL PEAK  4(2P23.3) WILD-TYPE
  M0                           6                            26
  M1                           0                             2
  MX                           2                            21
D22V7, binary
                               cls
clus                             0  1
  DEL PEAK  4(2P23.3) MUTATED    4  4
  DEL PEAK  4(2P23.3) WILD-TYPE 27 22
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  4(2P23.3) MUTATED      4    4
  DEL PEAK  4(2P23.3) WILD-TYPE   27   22
        clus
vv       DEL PEAK  4(2P23.3) MUTATED DEL PEAK  4(2P23.3) WILD-TYPE
  FEMALE                           4                            27
  MALE                             4                            22
                               vv
clus                            PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  DEL PEAK  4(2P23.3) MUTATED                                     7
  DEL PEAK  4(2P23.3) WILD-TYPE                                  44
                               vv
clus                            PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  DEL PEAK  4(2P23.3) MUTATED                                       1
  DEL PEAK  4(2P23.3) WILD-TYPE                                     3
                               vv
clus                            PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  DEL PEAK  4(2P23.3) MUTATED                                                  0
  DEL PEAK  4(2P23.3) WILD-TYPE                                                1
D22V8, multiclass
                                                  clus
vv                                                 DEL PEAK  4(2P23.3) MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                        7
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                      1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                           0
                                                  clus
vv                                                 DEL PEAK  4(2P23.3) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                         44
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                        3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                             1
D22V9, continuous
[1] "Remove cluster labels:"      "DEL PEAK  4(2P23.3) MUTATED"
clus
  DEL PEAK  4(2P23.3) MUTATED DEL PEAK  4(2P23.3) WILD-TYPE 
                            2                            12 
                   TCGA-F2-6880                    TCGA-FB-A4P5 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-H6-A45N                    TCGA-IB-7644 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-IB-7649                    TCGA-IB-7651 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-IB-7885                    TCGA-IB-7886 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-IB-7891                    TCGA-IB-8126 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-IB-8127                    TCGA-IB-A5SS 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
D22V10, continuous
[1] "Remove cluster labels:"      "DEL PEAK  4(2P23.3) MUTATED"
clus
  DEL PEAK  4(2P23.3) MUTATED DEL PEAK  4(2P23.3) WILD-TYPE 
                            1                            10 
                   TCGA-FB-A4P5                    TCGA-IB-7644 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-IB-7649                    TCGA-IB-7651 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-IB-7885                    TCGA-IB-7886 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-IB-7891                    TCGA-IB-8126 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                   TCGA-IB-8127                    TCGA-IB-A5SS 
"DEL PEAK  4(2P23.3) WILD-TYPE" "DEL PEAK  4(2P23.3) WILD-TYPE" 
                               vv
clus                            R0 R1 RX
  DEL PEAK  4(2P23.3) MUTATED    3  4  1
  DEL PEAK  4(2P23.3) WILD-TYPE 29 17  1
D22V11, multiclass
    clus
vv   DEL PEAK  4(2P23.3) MUTATED DEL PEAK  4(2P23.3) WILD-TYPE
  R0                           3                            29
  R1                           4                            17
  RX                           1                             1
D22V12, continuous

Clustering(23) Variable = DEL PEAK  5(3P24.1) MUTATION ANALYSIS
D23V1, survival
                               sevent
clus2                            0  1
  DEL PEAK  5(3P24.1) MUTATED    7  6
  DEL PEAK  5(3P24.1) WILD-TYPE 28 13
  DEL PEAK  5(3P24.1) MUTATED DEL PEAK  5(3P24.1) WILD-TYPE 
                           13                            41 
  DEL PEAK  5(3P24.1) MUTATED DEL PEAK  5(3P24.1) WILD-TYPE 
                            6                            13 
$`DEL PEAK  5(3P24.1) MUTATED`
TCGA-F2-A44H TCGA-HZ-7918 TCGA-HZ-7922 TCGA-HZ-7925 TCGA-HZ-8005 TCGA-HZ-A4BK 
        5.19         0.92         0.13        12.03         3.91         1.51 
TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7890 TCGA-IB-8127 
        4.77        21.86         4.04         3.58        19.66        17.13 
TCGA-IB-A5SP 
        9.83 

$`DEL PEAK  5(3P24.1) WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-FB-A4P5 
       10.98         9.96        11.84         7.07         5.03         0.13 
TCGA-FB-A545 TCGA-H6-8124 TCGA-H6-A45N TCGA-HZ-7289 TCGA-HZ-7919 TCGA-HZ-7923 
        0.03        12.89         7.63         7.86         0.66         0.26 
TCGA-HZ-7924 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8315 
       12.13         0.26         0.62         0.99         0.69         0.92 
TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H 
        0.49         0.10         0.16         2.96         0.76         1.02 
TCGA-HZ-A4BH TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 
        5.98        11.41        49.38        15.35        19.82        15.65 
TCGA-IB-7885 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 
       27.98        43.79        15.78        16.04         3.85        15.95 
TCGA-IB-8126 TCGA-IB-A5SO TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST 
        0.56        10.82         7.20        15.12         0.26 

  DEL PEAK  5(3P24.1) MUTATED DEL PEAK  5(3P24.1) WILD-TYPE 
                         0.13                          0.03 
  DEL PEAK  5(3P24.1) MUTATED DEL PEAK  5(3P24.1) WILD-TYPE 
                        21.86                         49.38 
  DEL PEAK  5(3P24.1) MUTATED DEL PEAK  5(3P24.1) WILD-TYPE 
                         4.77                          7.07 
[1] "0.1 - 21.9 (4.8)" "0.0 - 49.4 (7.1)"
                   TCGA-F2-6879                    TCGA-F2-6880 
"DEL PEAK  5(3P24.1) WILD-TYPE" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-F2-7273                    TCGA-F2-7276 
"DEL PEAK  5(3P24.1) WILD-TYPE" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-F2-A44G                    TCGA-F2-A44H 
"DEL PEAK  5(3P24.1) WILD-TYPE"   "DEL PEAK  5(3P24.1) MUTATED" 
                   TCGA-FB-A4P5                    TCGA-FB-A545 
"DEL PEAK  5(3P24.1) WILD-TYPE" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-H6-8124                    TCGA-H6-A45N 
"DEL PEAK  5(3P24.1) WILD-TYPE" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-HZ-7289                    TCGA-HZ-7918 
"DEL PEAK  5(3P24.1) WILD-TYPE"   "DEL PEAK  5(3P24.1) MUTATED" 
                   TCGA-HZ-7919                    TCGA-HZ-7922 
"DEL PEAK  5(3P24.1) WILD-TYPE"   "DEL PEAK  5(3P24.1) MUTATED" 
                   TCGA-HZ-7923                    TCGA-HZ-7924 
"DEL PEAK  5(3P24.1) WILD-TYPE" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-HZ-7925                    TCGA-HZ-7926 
  "DEL PEAK  5(3P24.1) MUTATED" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-HZ-8001                    TCGA-HZ-8002 
"DEL PEAK  5(3P24.1) WILD-TYPE" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-HZ-8003                    TCGA-HZ-8005 
"DEL PEAK  5(3P24.1) WILD-TYPE"   "DEL PEAK  5(3P24.1) MUTATED" 
                   TCGA-HZ-8315                    TCGA-HZ-8317 
"DEL PEAK  5(3P24.1) WILD-TYPE" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-HZ-8519                    TCGA-HZ-8636 
"DEL PEAK  5(3P24.1) WILD-TYPE" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-HZ-8638                    TCGA-HZ-A49G 
"DEL PEAK  5(3P24.1) WILD-TYPE" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-HZ-A49H                    TCGA-HZ-A4BH 
"DEL PEAK  5(3P24.1) WILD-TYPE" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-HZ-A4BK                    TCGA-IB-7644 
  "DEL PEAK  5(3P24.1) MUTATED" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-IB-7645                    TCGA-IB-7646 
"DEL PEAK  5(3P24.1) WILD-TYPE"   "DEL PEAK  5(3P24.1) MUTATED" 
                   TCGA-IB-7647                    TCGA-IB-7649 
  "DEL PEAK  5(3P24.1) MUTATED" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-IB-7651                    TCGA-IB-7652 
"DEL PEAK  5(3P24.1) WILD-TYPE" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-IB-7885                    TCGA-IB-7886 
"DEL PEAK  5(3P24.1) WILD-TYPE"   "DEL PEAK  5(3P24.1) MUTATED" 
                   TCGA-IB-7887                    TCGA-IB-7888 
  "DEL PEAK  5(3P24.1) MUTATED" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-IB-7889                    TCGA-IB-7890 
"DEL PEAK  5(3P24.1) WILD-TYPE"   "DEL PEAK  5(3P24.1) MUTATED" 
                   TCGA-IB-7891                    TCGA-IB-7893 
"DEL PEAK  5(3P24.1) WILD-TYPE" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-IB-7897                    TCGA-IB-8126 
"DEL PEAK  5(3P24.1) WILD-TYPE" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-IB-8127                    TCGA-IB-A5SO 
  "DEL PEAK  5(3P24.1) MUTATED" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-IB-A5SP                    TCGA-IB-A5SQ 
  "DEL PEAK  5(3P24.1) MUTATED" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-IB-A5SS                    TCGA-IB-A5ST 
"DEL PEAK  5(3P24.1) WILD-TYPE" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-F2-6879                    TCGA-F2-6880 
"DEL PEAK  5(3P24.1) WILD-TYPE" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-F2-7273                    TCGA-F2-7276 
"DEL PEAK  5(3P24.1) WILD-TYPE" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-F2-A44G                    TCGA-F2-A44H 
"DEL PEAK  5(3P24.1) WILD-TYPE"   "DEL PEAK  5(3P24.1) MUTATED" 
                   TCGA-FB-A4P5                    TCGA-FB-A545 
"DEL PEAK  5(3P24.1) WILD-TYPE" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-H6-8124                    TCGA-H6-A45N 
"DEL PEAK  5(3P24.1) WILD-TYPE" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-HZ-7289                    TCGA-HZ-7918 
"DEL PEAK  5(3P24.1) WILD-TYPE"   "DEL PEAK  5(3P24.1) MUTATED" 
                   TCGA-HZ-7919                    TCGA-HZ-7922 
"DEL PEAK  5(3P24.1) WILD-TYPE"   "DEL PEAK  5(3P24.1) MUTATED" 
                   TCGA-HZ-7923                    TCGA-HZ-7924 
"DEL PEAK  5(3P24.1) WILD-TYPE" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-HZ-7925                    TCGA-HZ-7926 
  "DEL PEAK  5(3P24.1) MUTATED" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-HZ-8001                    TCGA-HZ-8002 
"DEL PEAK  5(3P24.1) WILD-TYPE" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-HZ-8003                    TCGA-HZ-8005 
"DEL PEAK  5(3P24.1) WILD-TYPE"   "DEL PEAK  5(3P24.1) MUTATED" 
                   TCGA-HZ-8315                    TCGA-HZ-8317 
"DEL PEAK  5(3P24.1) WILD-TYPE" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-HZ-8519                    TCGA-HZ-8636 
"DEL PEAK  5(3P24.1) WILD-TYPE" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-HZ-8638                    TCGA-HZ-A49G 
"DEL PEAK  5(3P24.1) WILD-TYPE" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-HZ-A49H                    TCGA-HZ-A4BH 
"DEL PEAK  5(3P24.1) WILD-TYPE" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-HZ-A4BK                    TCGA-IB-7644 
  "DEL PEAK  5(3P24.1) MUTATED" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-IB-7645                    TCGA-IB-7646 
"DEL PEAK  5(3P24.1) WILD-TYPE"   "DEL PEAK  5(3P24.1) MUTATED" 
                   TCGA-IB-7647                    TCGA-IB-7649 
  "DEL PEAK  5(3P24.1) MUTATED" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-IB-7651                    TCGA-IB-7652 
"DEL PEAK  5(3P24.1) WILD-TYPE" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-IB-7885                    TCGA-IB-7886 
"DEL PEAK  5(3P24.1) WILD-TYPE"   "DEL PEAK  5(3P24.1) MUTATED" 
                   TCGA-IB-7887                    TCGA-IB-7888 
  "DEL PEAK  5(3P24.1) MUTATED" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-IB-7889                    TCGA-IB-7890 
"DEL PEAK  5(3P24.1) WILD-TYPE"   "DEL PEAK  5(3P24.1) MUTATED" 
                   TCGA-IB-7891                    TCGA-IB-7893 
"DEL PEAK  5(3P24.1) WILD-TYPE" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-IB-7897                    TCGA-IB-8126 
"DEL PEAK  5(3P24.1) WILD-TYPE" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-IB-8127                    TCGA-IB-A5SO 
  "DEL PEAK  5(3P24.1) MUTATED" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-IB-A5SP                    TCGA-IB-A5SQ 
  "DEL PEAK  5(3P24.1) MUTATED" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-IB-A5SS                    TCGA-IB-A5ST 
"DEL PEAK  5(3P24.1) WILD-TYPE" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-F2-6879                    TCGA-F2-6880 
"DEL PEAK  5(3P24.1) WILD-TYPE" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-F2-7273                    TCGA-F2-7276 
"DEL PEAK  5(3P24.1) WILD-TYPE" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-F2-A44G                    TCGA-F2-A44H 
"DEL PEAK  5(3P24.1) WILD-TYPE"   "DEL PEAK  5(3P24.1) MUTATED" 
                   TCGA-FB-A4P5                    TCGA-FB-A545 
"DEL PEAK  5(3P24.1) WILD-TYPE" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-H6-8124                    TCGA-H6-A45N 
"DEL PEAK  5(3P24.1) WILD-TYPE" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-HZ-7289                    TCGA-HZ-7918 
"DEL PEAK  5(3P24.1) WILD-TYPE"   "DEL PEAK  5(3P24.1) MUTATED" 
                   TCGA-HZ-7919                    TCGA-HZ-7922 
"DEL PEAK  5(3P24.1) WILD-TYPE"   "DEL PEAK  5(3P24.1) MUTATED" 
                   TCGA-HZ-7923                    TCGA-HZ-7924 
"DEL PEAK  5(3P24.1) WILD-TYPE" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-HZ-7925                    TCGA-HZ-7926 
  "DEL PEAK  5(3P24.1) MUTATED" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-HZ-8001                    TCGA-HZ-8002 
"DEL PEAK  5(3P24.1) WILD-TYPE" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-HZ-8003                    TCGA-HZ-8005 
"DEL PEAK  5(3P24.1) WILD-TYPE"   "DEL PEAK  5(3P24.1) MUTATED" 
                   TCGA-HZ-8315                    TCGA-HZ-8317 
"DEL PEAK  5(3P24.1) WILD-TYPE" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-HZ-8519                    TCGA-HZ-8636 
"DEL PEAK  5(3P24.1) WILD-TYPE" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-HZ-8638                    TCGA-HZ-A49G 
"DEL PEAK  5(3P24.1) WILD-TYPE" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-HZ-A49H                    TCGA-HZ-A4BH 
"DEL PEAK  5(3P24.1) WILD-TYPE" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-HZ-A4BK                    TCGA-IB-7644 
  "DEL PEAK  5(3P24.1) MUTATED" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-IB-7645                    TCGA-IB-7646 
"DEL PEAK  5(3P24.1) WILD-TYPE"   "DEL PEAK  5(3P24.1) MUTATED" 
                   TCGA-IB-7647                    TCGA-IB-7649 
  "DEL PEAK  5(3P24.1) MUTATED" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-IB-7651                    TCGA-IB-7652 
"DEL PEAK  5(3P24.1) WILD-TYPE" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-IB-7885                    TCGA-IB-7886 
"DEL PEAK  5(3P24.1) WILD-TYPE"   "DEL PEAK  5(3P24.1) MUTATED" 
                   TCGA-IB-7887                    TCGA-IB-7888 
  "DEL PEAK  5(3P24.1) MUTATED" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-IB-7889                    TCGA-IB-7890 
"DEL PEAK  5(3P24.1) WILD-TYPE"   "DEL PEAK  5(3P24.1) MUTATED" 
                   TCGA-IB-7891                    TCGA-IB-7893 
"DEL PEAK  5(3P24.1) WILD-TYPE" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-IB-7897                    TCGA-IB-8126 
"DEL PEAK  5(3P24.1) WILD-TYPE" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-IB-8127                    TCGA-IB-A5SO 
  "DEL PEAK  5(3P24.1) MUTATED" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-IB-A5SP                    TCGA-IB-A5SQ 
  "DEL PEAK  5(3P24.1) MUTATED" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-IB-A5SS                    TCGA-IB-A5ST 
"DEL PEAK  5(3P24.1) WILD-TYPE" "DEL PEAK  5(3P24.1) WILD-TYPE" 
[1] "hr=" "1.6"
D23V2, continuous
                               vv
clus                            STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III
  DEL PEAK  5(3P24.1) MUTATED          0        1         2        11         0
  DEL PEAK  5(3P24.1) WILD-TYPE        2        2         5        30         2
                               vv
clus                            STAGE IV
  DEL PEAK  5(3P24.1) MUTATED          0
  DEL PEAK  5(3P24.1) WILD-TYPE        2
D23V3, multiclass
                               vv
clus                            T1+T2 T3+T4
  DEL PEAK  5(3P24.1) MUTATED       1    13
  DEL PEAK  5(3P24.1) WILD-TYPE     5    38
D23V4, multiclass
       clus
vv      DEL PEAK  5(3P24.1) MUTATED DEL PEAK  5(3P24.1) WILD-TYPE
  T1+T2                           1                             5
  T3+T4                          13                            38
D23V5, binary
                               cls
clus                             0  1
  DEL PEAK  5(3P24.1) MUTATED    3 11
  DEL PEAK  5(3P24.1) WILD-TYPE 11 32
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  5(3P24.1) MUTATED      3   11
  DEL PEAK  5(3P24.1) WILD-TYPE   11   32
   clus
vv  DEL PEAK  5(3P24.1) MUTATED DEL PEAK  5(3P24.1) WILD-TYPE
  0                           3                            11
  1                          11                            32
                               vv
clus                            M0 M1 MX
  DEL PEAK  5(3P24.1) MUTATED    9  0  5
  DEL PEAK  5(3P24.1) WILD-TYPE 23  2 18
D23V6, multiclass
    clus
vv   DEL PEAK  5(3P24.1) MUTATED DEL PEAK  5(3P24.1) WILD-TYPE
  M0                           9                            23
  M1                           0                             2
  MX                           5                            18
D23V7, binary
                               cls
clus                             0  1
  DEL PEAK  5(3P24.1) MUTATED    4 10
  DEL PEAK  5(3P24.1) WILD-TYPE 27 16
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  5(3P24.1) MUTATED      4   10
  DEL PEAK  5(3P24.1) WILD-TYPE   27   16
        clus
vv       DEL PEAK  5(3P24.1) MUTATED DEL PEAK  5(3P24.1) WILD-TYPE
  FEMALE                           4                            27
  MALE                            10                            16
                               vv
clus                            PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  DEL PEAK  5(3P24.1) MUTATED                                    13
  DEL PEAK  5(3P24.1) WILD-TYPE                                  38
                               vv
clus                            PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  DEL PEAK  5(3P24.1) MUTATED                                       1
  DEL PEAK  5(3P24.1) WILD-TYPE                                     3
                               vv
clus                            PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  DEL PEAK  5(3P24.1) MUTATED                                                  0
  DEL PEAK  5(3P24.1) WILD-TYPE                                                1
D23V8, multiclass
                                                  clus
vv                                                 DEL PEAK  5(3P24.1) MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                       13
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                      1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                           0
                                                  clus
vv                                                 DEL PEAK  5(3P24.1) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                         38
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                        3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                             1
D23V9, continuous
D23V10, continuous
[1] "Remove cluster labels:"      "DEL PEAK  5(3P24.1) MUTATED"
clus
  DEL PEAK  5(3P24.1) MUTATED DEL PEAK  5(3P24.1) WILD-TYPE 
                            2                             9 
                   TCGA-FB-A4P5                    TCGA-H6-8124 
"DEL PEAK  5(3P24.1) WILD-TYPE" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-IB-7644                    TCGA-IB-7649 
"DEL PEAK  5(3P24.1) WILD-TYPE" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-IB-7651                    TCGA-IB-7885 
"DEL PEAK  5(3P24.1) WILD-TYPE" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-IB-7891                    TCGA-IB-8126 
"DEL PEAK  5(3P24.1) WILD-TYPE" "DEL PEAK  5(3P24.1) WILD-TYPE" 
                   TCGA-IB-A5SS 
"DEL PEAK  5(3P24.1) WILD-TYPE" 
                               vv
clus                            R0 R1 RX
  DEL PEAK  5(3P24.1) MUTATED    6  8  0
  DEL PEAK  5(3P24.1) WILD-TYPE 26 13  2
D23V11, multiclass
    clus
vv   DEL PEAK  5(3P24.1) MUTATED DEL PEAK  5(3P24.1) WILD-TYPE
  R0                           6                            26
  R1                           8                            13
  RX                           0                             2
D23V12, continuous

Clustering(24) Variable = DEL PEAK  6(4P16.1) MUTATION ANALYSIS
D24V1, survival
                               sevent
clus2                            0  1
  DEL PEAK  6(4P16.1) MUTATED    4  3
  DEL PEAK  6(4P16.1) WILD-TYPE 31 16
  DEL PEAK  6(4P16.1) MUTATED DEL PEAK  6(4P16.1) WILD-TYPE 
                            7                            47 
  DEL PEAK  6(4P16.1) MUTATED DEL PEAK  6(4P16.1) WILD-TYPE 
                            3                            16 
$`DEL PEAK  6(4P16.1) MUTATED`
TCGA-HZ-7918 TCGA-HZ-7925 TCGA-HZ-8636 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7889 
        0.92        12.03         0.16         4.04         3.58        15.78 
TCGA-IB-A5SP 
        9.83 

$`DEL PEAK  6(4P16.1) WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.96        11.84         7.07         5.03         5.19 
TCGA-FB-A4P5 TCGA-FB-A545 TCGA-H6-8124 TCGA-H6-A45N TCGA-HZ-7289 TCGA-HZ-7919 
        0.13         0.03        12.89         7.63         7.86         0.66 
TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 
        0.13         0.26        12.13         0.26         0.62         0.99 
TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8638 
        0.69         3.91         0.92         0.49         0.10         2.96 
TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 
        0.76         1.02         5.98         1.51        11.41        49.38 
TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 
        4.77        21.86        15.35        19.82        15.65        27.98 
TCGA-IB-7888 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 
       43.79        19.66        16.04         3.85        15.95         0.56 
TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST 
       17.13        10.82         7.20        15.12         0.26 

  DEL PEAK  6(4P16.1) MUTATED DEL PEAK  6(4P16.1) WILD-TYPE 
                         0.16                          0.03 
  DEL PEAK  6(4P16.1) MUTATED DEL PEAK  6(4P16.1) WILD-TYPE 
                        15.78                         49.38 
  DEL PEAK  6(4P16.1) MUTATED DEL PEAK  6(4P16.1) WILD-TYPE 
                         4.04                          5.98 
[1] "0.2 - 15.8 (4.0)" "0.0 - 49.4 (6.0)"
                   TCGA-F2-6879                    TCGA-F2-6880 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-F2-7273                    TCGA-F2-7276 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-F2-A44G                    TCGA-F2-A44H 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-FB-A4P5                    TCGA-FB-A545 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-H6-8124                    TCGA-H6-A45N 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-HZ-7289                    TCGA-HZ-7918 
"DEL PEAK  6(4P16.1) WILD-TYPE"   "DEL PEAK  6(4P16.1) MUTATED" 
                   TCGA-HZ-7919                    TCGA-HZ-7922 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-HZ-7923                    TCGA-HZ-7924 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-HZ-7925                    TCGA-HZ-7926 
  "DEL PEAK  6(4P16.1) MUTATED" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-HZ-8001                    TCGA-HZ-8002 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-HZ-8003                    TCGA-HZ-8005 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-HZ-8315                    TCGA-HZ-8317 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-HZ-8519                    TCGA-HZ-8636 
"DEL PEAK  6(4P16.1) WILD-TYPE"   "DEL PEAK  6(4P16.1) MUTATED" 
                   TCGA-HZ-8638                    TCGA-HZ-A49G 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-HZ-A49H                    TCGA-HZ-A4BH 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-HZ-A4BK                    TCGA-IB-7644 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-IB-7645                    TCGA-IB-7646 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-IB-7647                    TCGA-IB-7649 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-IB-7651                    TCGA-IB-7652 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-IB-7885                    TCGA-IB-7886 
"DEL PEAK  6(4P16.1) WILD-TYPE"   "DEL PEAK  6(4P16.1) MUTATED" 
                   TCGA-IB-7887                    TCGA-IB-7888 
  "DEL PEAK  6(4P16.1) MUTATED" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-IB-7889                    TCGA-IB-7890 
  "DEL PEAK  6(4P16.1) MUTATED" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-IB-7891                    TCGA-IB-7893 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-IB-7897                    TCGA-IB-8126 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-IB-8127                    TCGA-IB-A5SO 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-IB-A5SP                    TCGA-IB-A5SQ 
  "DEL PEAK  6(4P16.1) MUTATED" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-IB-A5SS                    TCGA-IB-A5ST 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-F2-6879                    TCGA-F2-6880 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-F2-7273                    TCGA-F2-7276 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-F2-A44G                    TCGA-F2-A44H 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-FB-A4P5                    TCGA-FB-A545 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-H6-8124                    TCGA-H6-A45N 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-HZ-7289                    TCGA-HZ-7918 
"DEL PEAK  6(4P16.1) WILD-TYPE"   "DEL PEAK  6(4P16.1) MUTATED" 
                   TCGA-HZ-7919                    TCGA-HZ-7922 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-HZ-7923                    TCGA-HZ-7924 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-HZ-7925                    TCGA-HZ-7926 
  "DEL PEAK  6(4P16.1) MUTATED" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-HZ-8001                    TCGA-HZ-8002 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-HZ-8003                    TCGA-HZ-8005 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-HZ-8315                    TCGA-HZ-8317 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-HZ-8519                    TCGA-HZ-8636 
"DEL PEAK  6(4P16.1) WILD-TYPE"   "DEL PEAK  6(4P16.1) MUTATED" 
                   TCGA-HZ-8638                    TCGA-HZ-A49G 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-HZ-A49H                    TCGA-HZ-A4BH 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-HZ-A4BK                    TCGA-IB-7644 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-IB-7645                    TCGA-IB-7646 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-IB-7647                    TCGA-IB-7649 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-IB-7651                    TCGA-IB-7652 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-IB-7885                    TCGA-IB-7886 
"DEL PEAK  6(4P16.1) WILD-TYPE"   "DEL PEAK  6(4P16.1) MUTATED" 
                   TCGA-IB-7887                    TCGA-IB-7888 
  "DEL PEAK  6(4P16.1) MUTATED" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-IB-7889                    TCGA-IB-7890 
  "DEL PEAK  6(4P16.1) MUTATED" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-IB-7891                    TCGA-IB-7893 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-IB-7897                    TCGA-IB-8126 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-IB-8127                    TCGA-IB-A5SO 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-IB-A5SP                    TCGA-IB-A5SQ 
  "DEL PEAK  6(4P16.1) MUTATED" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-IB-A5SS                    TCGA-IB-A5ST 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-F2-6879                    TCGA-F2-6880 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-F2-7273                    TCGA-F2-7276 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-F2-A44G                    TCGA-F2-A44H 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-FB-A4P5                    TCGA-FB-A545 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-H6-8124                    TCGA-H6-A45N 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-HZ-7289                    TCGA-HZ-7918 
"DEL PEAK  6(4P16.1) WILD-TYPE"   "DEL PEAK  6(4P16.1) MUTATED" 
                   TCGA-HZ-7919                    TCGA-HZ-7922 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-HZ-7923                    TCGA-HZ-7924 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-HZ-7925                    TCGA-HZ-7926 
  "DEL PEAK  6(4P16.1) MUTATED" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-HZ-8001                    TCGA-HZ-8002 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-HZ-8003                    TCGA-HZ-8005 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-HZ-8315                    TCGA-HZ-8317 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-HZ-8519                    TCGA-HZ-8636 
"DEL PEAK  6(4P16.1) WILD-TYPE"   "DEL PEAK  6(4P16.1) MUTATED" 
                   TCGA-HZ-8638                    TCGA-HZ-A49G 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-HZ-A49H                    TCGA-HZ-A4BH 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-HZ-A4BK                    TCGA-IB-7644 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-IB-7645                    TCGA-IB-7646 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-IB-7647                    TCGA-IB-7649 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-IB-7651                    TCGA-IB-7652 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-IB-7885                    TCGA-IB-7886 
"DEL PEAK  6(4P16.1) WILD-TYPE"   "DEL PEAK  6(4P16.1) MUTATED" 
                   TCGA-IB-7887                    TCGA-IB-7888 
  "DEL PEAK  6(4P16.1) MUTATED" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-IB-7889                    TCGA-IB-7890 
  "DEL PEAK  6(4P16.1) MUTATED" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-IB-7891                    TCGA-IB-7893 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-IB-7897                    TCGA-IB-8126 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-IB-8127                    TCGA-IB-A5SO 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-IB-A5SP                    TCGA-IB-A5SQ 
  "DEL PEAK  6(4P16.1) MUTATED" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-IB-A5SS                    TCGA-IB-A5ST 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
[1] "hr=" "2.4"
D24V2, continuous
                               vv
clus                            STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III
  DEL PEAK  6(4P16.1) MUTATED          0        0         1         6         0
  DEL PEAK  6(4P16.1) WILD-TYPE        2        3         6        35         2
                               vv
clus                            STAGE IV
  DEL PEAK  6(4P16.1) MUTATED          1
  DEL PEAK  6(4P16.1) WILD-TYPE        1
D24V3, multiclass
                               vv
clus                            T1+T2 T3+T4
  DEL PEAK  6(4P16.1) MUTATED       0     8
  DEL PEAK  6(4P16.1) WILD-TYPE     6    43
D24V4, multiclass
       clus
vv      DEL PEAK  6(4P16.1) MUTATED DEL PEAK  6(4P16.1) WILD-TYPE
  T1+T2                           0                             6
  T3+T4                           8                            43
D24V5, binary
                               cls
clus                             0  1
  DEL PEAK  6(4P16.1) MUTATED    2  6
  DEL PEAK  6(4P16.1) WILD-TYPE 12 37
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  6(4P16.1) MUTATED      2    6
  DEL PEAK  6(4P16.1) WILD-TYPE   12   37
   clus
vv  DEL PEAK  6(4P16.1) MUTATED DEL PEAK  6(4P16.1) WILD-TYPE
  0                           2                            12
  1                           6                            37
                               vv
clus                            M0 M1 MX
  DEL PEAK  6(4P16.1) MUTATED    5  1  2
  DEL PEAK  6(4P16.1) WILD-TYPE 27  1 21
D24V6, multiclass
    clus
vv   DEL PEAK  6(4P16.1) MUTATED DEL PEAK  6(4P16.1) WILD-TYPE
  M0                           5                            27
  M1                           1                             1
  MX                           2                            21
D24V7, binary
                               cls
clus                             0  1
  DEL PEAK  6(4P16.1) MUTATED    3  5
  DEL PEAK  6(4P16.1) WILD-TYPE 28 21
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  6(4P16.1) MUTATED      3    5
  DEL PEAK  6(4P16.1) WILD-TYPE   28   21
        clus
vv       DEL PEAK  6(4P16.1) MUTATED DEL PEAK  6(4P16.1) WILD-TYPE
  FEMALE                           3                            28
  MALE                             5                            21
                               vv
clus                            PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  DEL PEAK  6(4P16.1) MUTATED                                     8
  DEL PEAK  6(4P16.1) WILD-TYPE                                  43
                               vv
clus                            PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  DEL PEAK  6(4P16.1) MUTATED                                       0
  DEL PEAK  6(4P16.1) WILD-TYPE                                     4
                               vv
clus                            PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  DEL PEAK  6(4P16.1) MUTATED                                                  0
  DEL PEAK  6(4P16.1) WILD-TYPE                                                1
D24V8, multiclass
                                                  clus
vv                                                 DEL PEAK  6(4P16.1) MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                        8
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                      0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                           0
                                                  clus
vv                                                 DEL PEAK  6(4P16.1) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                         43
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                        4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                             1
D24V9, continuous
[1] "Remove cluster labels:"      "DEL PEAK  6(4P16.1) MUTATED"
clus
  DEL PEAK  6(4P16.1) MUTATED DEL PEAK  6(4P16.1) WILD-TYPE 
                            2                            12 
                   TCGA-F2-6880                    TCGA-FB-A4P5 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-H6-8124                    TCGA-H6-A45N 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-IB-7644                    TCGA-IB-7649 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-IB-7651                    TCGA-IB-7885 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-IB-7891                    TCGA-IB-8126 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-IB-8127                    TCGA-IB-A5SS 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
D24V10, continuous
[1] "Remove cluster labels:"      "DEL PEAK  6(4P16.1) MUTATED"
clus
  DEL PEAK  6(4P16.1) MUTATED DEL PEAK  6(4P16.1) WILD-TYPE 
                            1                            10 
                   TCGA-FB-A4P5                    TCGA-H6-8124 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-IB-7644                    TCGA-IB-7649 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-IB-7651                    TCGA-IB-7885 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-IB-7891                    TCGA-IB-8126 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                   TCGA-IB-8127                    TCGA-IB-A5SS 
"DEL PEAK  6(4P16.1) WILD-TYPE" "DEL PEAK  6(4P16.1) WILD-TYPE" 
                               vv
clus                            R0 R1 RX
  DEL PEAK  6(4P16.1) MUTATED    3  5  0
  DEL PEAK  6(4P16.1) WILD-TYPE 29 16  2
D24V11, multiclass
    clus
vv   DEL PEAK  6(4P16.1) MUTATED DEL PEAK  6(4P16.1) WILD-TYPE
  R0                           3                            29
  R1                           5                            16
  RX                           0                             2
D24V12, continuous

Clustering(25) Variable = DEL PEAK  7(4Q35.2) MUTATION ANALYSIS
D25V1, survival
                               sevent
clus2                            0  1
  DEL PEAK  7(4Q35.2) MUTATED    6  1
  DEL PEAK  7(4Q35.2) WILD-TYPE 29 18
  DEL PEAK  7(4Q35.2) MUTATED DEL PEAK  7(4Q35.2) WILD-TYPE 
                            7                            47 
  DEL PEAK  7(4Q35.2) MUTATED DEL PEAK  7(4Q35.2) WILD-TYPE 
                            1                            18 
$`DEL PEAK  7(4Q35.2) MUTATED`
TCGA-HZ-7922 TCGA-HZ-7925 TCGA-HZ-A49G TCGA-HZ-A4BH TCGA-IB-7652 TCGA-IB-7886 
        0.13        12.03         0.76         5.98        15.65         4.04 
TCGA-IB-A5SP 
        9.83 

$`DEL PEAK  7(4Q35.2) WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.96        11.84         7.07         5.03         5.19 
TCGA-FB-A4P5 TCGA-FB-A545 TCGA-H6-8124 TCGA-H6-A45N TCGA-HZ-7289 TCGA-HZ-7918 
        0.13         0.03        12.89         7.63         7.86         0.92 
TCGA-HZ-7919 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 
        0.66         0.26        12.13         0.26         0.62         0.99 
TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8636 
        0.69         3.91         0.92         0.49         0.10         0.16 
TCGA-HZ-8638 TCGA-HZ-A49H TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 
        2.96         1.02         1.51        11.41        49.38         4.77 
TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7885 TCGA-IB-7887 TCGA-IB-7888 
       21.86        15.35        19.82        27.98         3.58        43.79 
TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 
       15.78        19.66        16.04         3.85        15.95         0.56 
TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST 
       17.13        10.82         7.20        15.12         0.26 

  DEL PEAK  7(4Q35.2) MUTATED DEL PEAK  7(4Q35.2) WILD-TYPE 
                         0.13                          0.03 
  DEL PEAK  7(4Q35.2) MUTATED DEL PEAK  7(4Q35.2) WILD-TYPE 
                        15.65                         49.38 
  DEL PEAK  7(4Q35.2) MUTATED DEL PEAK  7(4Q35.2) WILD-TYPE 
                         5.98                          5.19 
[1] "0.1 - 15.7 (6.0)" "0.0 - 49.4 (5.2)"
                   TCGA-F2-6879                    TCGA-F2-6880 
"DEL PEAK  7(4Q35.2) WILD-TYPE" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-F2-7273                    TCGA-F2-7276 
"DEL PEAK  7(4Q35.2) WILD-TYPE" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-F2-A44G                    TCGA-F2-A44H 
"DEL PEAK  7(4Q35.2) WILD-TYPE" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-FB-A4P5                    TCGA-FB-A545 
"DEL PEAK  7(4Q35.2) WILD-TYPE" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-H6-8124                    TCGA-H6-A45N 
"DEL PEAK  7(4Q35.2) WILD-TYPE" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-HZ-7289                    TCGA-HZ-7918 
"DEL PEAK  7(4Q35.2) WILD-TYPE" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-HZ-7919                    TCGA-HZ-7922 
"DEL PEAK  7(4Q35.2) WILD-TYPE"   "DEL PEAK  7(4Q35.2) MUTATED" 
                   TCGA-HZ-7923                    TCGA-HZ-7924 
"DEL PEAK  7(4Q35.2) WILD-TYPE" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-HZ-7925                    TCGA-HZ-7926 
  "DEL PEAK  7(4Q35.2) MUTATED" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-HZ-8001                    TCGA-HZ-8002 
"DEL PEAK  7(4Q35.2) WILD-TYPE" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-HZ-8003                    TCGA-HZ-8005 
"DEL PEAK  7(4Q35.2) WILD-TYPE" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-HZ-8315                    TCGA-HZ-8317 
"DEL PEAK  7(4Q35.2) WILD-TYPE" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-HZ-8519                    TCGA-HZ-8636 
"DEL PEAK  7(4Q35.2) WILD-TYPE" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-HZ-8638                    TCGA-HZ-A49G 
"DEL PEAK  7(4Q35.2) WILD-TYPE"   "DEL PEAK  7(4Q35.2) MUTATED" 
                   TCGA-HZ-A49H                    TCGA-HZ-A4BH 
"DEL PEAK  7(4Q35.2) WILD-TYPE"   "DEL PEAK  7(4Q35.2) MUTATED" 
                   TCGA-HZ-A4BK                    TCGA-IB-7644 
"DEL PEAK  7(4Q35.2) WILD-TYPE" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-IB-7645                    TCGA-IB-7646 
"DEL PEAK  7(4Q35.2) WILD-TYPE" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-IB-7647                    TCGA-IB-7649 
"DEL PEAK  7(4Q35.2) WILD-TYPE" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-IB-7651                    TCGA-IB-7652 
"DEL PEAK  7(4Q35.2) WILD-TYPE"   "DEL PEAK  7(4Q35.2) MUTATED" 
                   TCGA-IB-7885                    TCGA-IB-7886 
"DEL PEAK  7(4Q35.2) WILD-TYPE"   "DEL PEAK  7(4Q35.2) MUTATED" 
                   TCGA-IB-7887                    TCGA-IB-7888 
"DEL PEAK  7(4Q35.2) WILD-TYPE" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-IB-7889                    TCGA-IB-7890 
"DEL PEAK  7(4Q35.2) WILD-TYPE" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-IB-7891                    TCGA-IB-7893 
"DEL PEAK  7(4Q35.2) WILD-TYPE" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-IB-7897                    TCGA-IB-8126 
"DEL PEAK  7(4Q35.2) WILD-TYPE" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-IB-8127                    TCGA-IB-A5SO 
"DEL PEAK  7(4Q35.2) WILD-TYPE" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-IB-A5SP                    TCGA-IB-A5SQ 
  "DEL PEAK  7(4Q35.2) MUTATED" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-IB-A5SS                    TCGA-IB-A5ST 
"DEL PEAK  7(4Q35.2) WILD-TYPE" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-F2-6879                    TCGA-F2-6880 
"DEL PEAK  7(4Q35.2) WILD-TYPE" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-F2-7273                    TCGA-F2-7276 
"DEL PEAK  7(4Q35.2) WILD-TYPE" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-F2-A44G                    TCGA-F2-A44H 
"DEL PEAK  7(4Q35.2) WILD-TYPE" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-FB-A4P5                    TCGA-FB-A545 
"DEL PEAK  7(4Q35.2) WILD-TYPE" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-H6-8124                    TCGA-H6-A45N 
"DEL PEAK  7(4Q35.2) WILD-TYPE" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-HZ-7289                    TCGA-HZ-7918 
"DEL PEAK  7(4Q35.2) WILD-TYPE" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-HZ-7919                    TCGA-HZ-7922 
"DEL PEAK  7(4Q35.2) WILD-TYPE"   "DEL PEAK  7(4Q35.2) MUTATED" 
                   TCGA-HZ-7923                    TCGA-HZ-7924 
"DEL PEAK  7(4Q35.2) WILD-TYPE" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-HZ-7925                    TCGA-HZ-7926 
  "DEL PEAK  7(4Q35.2) MUTATED" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-HZ-8001                    TCGA-HZ-8002 
"DEL PEAK  7(4Q35.2) WILD-TYPE" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-HZ-8003                    TCGA-HZ-8005 
"DEL PEAK  7(4Q35.2) WILD-TYPE" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-HZ-8315                    TCGA-HZ-8317 
"DEL PEAK  7(4Q35.2) WILD-TYPE" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-HZ-8519                    TCGA-HZ-8636 
"DEL PEAK  7(4Q35.2) WILD-TYPE" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-HZ-8638                    TCGA-HZ-A49G 
"DEL PEAK  7(4Q35.2) WILD-TYPE"   "DEL PEAK  7(4Q35.2) MUTATED" 
                   TCGA-HZ-A49H                    TCGA-HZ-A4BH 
"DEL PEAK  7(4Q35.2) WILD-TYPE"   "DEL PEAK  7(4Q35.2) MUTATED" 
                   TCGA-HZ-A4BK                    TCGA-IB-7644 
"DEL PEAK  7(4Q35.2) WILD-TYPE" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-IB-7645                    TCGA-IB-7646 
"DEL PEAK  7(4Q35.2) WILD-TYPE" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-IB-7647                    TCGA-IB-7649 
"DEL PEAK  7(4Q35.2) WILD-TYPE" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-IB-7651                    TCGA-IB-7652 
"DEL PEAK  7(4Q35.2) WILD-TYPE"   "DEL PEAK  7(4Q35.2) MUTATED" 
                   TCGA-IB-7885                    TCGA-IB-7886 
"DEL PEAK  7(4Q35.2) WILD-TYPE"   "DEL PEAK  7(4Q35.2) MUTATED" 
                   TCGA-IB-7887                    TCGA-IB-7888 
"DEL PEAK  7(4Q35.2) WILD-TYPE" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-IB-7889                    TCGA-IB-7890 
"DEL PEAK  7(4Q35.2) WILD-TYPE" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-IB-7891                    TCGA-IB-7893 
"DEL PEAK  7(4Q35.2) WILD-TYPE" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-IB-7897                    TCGA-IB-8126 
"DEL PEAK  7(4Q35.2) WILD-TYPE" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-IB-8127                    TCGA-IB-A5SO 
"DEL PEAK  7(4Q35.2) WILD-TYPE" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-IB-A5SP                    TCGA-IB-A5SQ 
  "DEL PEAK  7(4Q35.2) MUTATED" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-IB-A5SS                    TCGA-IB-A5ST 
"DEL PEAK  7(4Q35.2) WILD-TYPE" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-F2-6879                    TCGA-F2-6880 
"DEL PEAK  7(4Q35.2) WILD-TYPE" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-F2-7273                    TCGA-F2-7276 
"DEL PEAK  7(4Q35.2) WILD-TYPE" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-F2-A44G                    TCGA-F2-A44H 
"DEL PEAK  7(4Q35.2) WILD-TYPE" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-FB-A4P5                    TCGA-FB-A545 
"DEL PEAK  7(4Q35.2) WILD-TYPE" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-H6-8124                    TCGA-H6-A45N 
"DEL PEAK  7(4Q35.2) WILD-TYPE" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-HZ-7289                    TCGA-HZ-7918 
"DEL PEAK  7(4Q35.2) WILD-TYPE" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-HZ-7919                    TCGA-HZ-7922 
"DEL PEAK  7(4Q35.2) WILD-TYPE"   "DEL PEAK  7(4Q35.2) MUTATED" 
                   TCGA-HZ-7923                    TCGA-HZ-7924 
"DEL PEAK  7(4Q35.2) WILD-TYPE" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-HZ-7925                    TCGA-HZ-7926 
  "DEL PEAK  7(4Q35.2) MUTATED" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-HZ-8001                    TCGA-HZ-8002 
"DEL PEAK  7(4Q35.2) WILD-TYPE" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-HZ-8003                    TCGA-HZ-8005 
"DEL PEAK  7(4Q35.2) WILD-TYPE" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-HZ-8315                    TCGA-HZ-8317 
"DEL PEAK  7(4Q35.2) WILD-TYPE" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-HZ-8519                    TCGA-HZ-8636 
"DEL PEAK  7(4Q35.2) WILD-TYPE" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-HZ-8638                    TCGA-HZ-A49G 
"DEL PEAK  7(4Q35.2) WILD-TYPE"   "DEL PEAK  7(4Q35.2) MUTATED" 
                   TCGA-HZ-A49H                    TCGA-HZ-A4BH 
"DEL PEAK  7(4Q35.2) WILD-TYPE"   "DEL PEAK  7(4Q35.2) MUTATED" 
                   TCGA-HZ-A4BK                    TCGA-IB-7644 
"DEL PEAK  7(4Q35.2) WILD-TYPE" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-IB-7645                    TCGA-IB-7646 
"DEL PEAK  7(4Q35.2) WILD-TYPE" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-IB-7647                    TCGA-IB-7649 
"DEL PEAK  7(4Q35.2) WILD-TYPE" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-IB-7651                    TCGA-IB-7652 
"DEL PEAK  7(4Q35.2) WILD-TYPE"   "DEL PEAK  7(4Q35.2) MUTATED" 
                   TCGA-IB-7885                    TCGA-IB-7886 
"DEL PEAK  7(4Q35.2) WILD-TYPE"   "DEL PEAK  7(4Q35.2) MUTATED" 
                   TCGA-IB-7887                    TCGA-IB-7888 
"DEL PEAK  7(4Q35.2) WILD-TYPE" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-IB-7889                    TCGA-IB-7890 
"DEL PEAK  7(4Q35.2) WILD-TYPE" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-IB-7891                    TCGA-IB-7893 
"DEL PEAK  7(4Q35.2) WILD-TYPE" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-IB-7897                    TCGA-IB-8126 
"DEL PEAK  7(4Q35.2) WILD-TYPE" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-IB-8127                    TCGA-IB-A5SO 
"DEL PEAK  7(4Q35.2) WILD-TYPE" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-IB-A5SP                    TCGA-IB-A5SQ 
  "DEL PEAK  7(4Q35.2) MUTATED" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-IB-A5SS                    TCGA-IB-A5ST 
"DEL PEAK  7(4Q35.2) WILD-TYPE" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
[1] "hr=" "1.6"
D25V2, continuous
                               vv
clus                            STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III
  DEL PEAK  7(4Q35.2) MUTATED          0        0         1         8         0
  DEL PEAK  7(4Q35.2) WILD-TYPE        2        3         6        33         2
                               vv
clus                            STAGE IV
  DEL PEAK  7(4Q35.2) MUTATED          0
  DEL PEAK  7(4Q35.2) WILD-TYPE        2
D25V3, multiclass
                               vv
clus                            T1+T2 T3+T4
  DEL PEAK  7(4Q35.2) MUTATED       1     8
  DEL PEAK  7(4Q35.2) WILD-TYPE     5    43
D25V4, multiclass
       clus
vv      DEL PEAK  7(4Q35.2) MUTATED DEL PEAK  7(4Q35.2) WILD-TYPE
  T1+T2                           1                             5
  T3+T4                           8                            43
D25V5, binary
                               cls
clus                             0  1
  DEL PEAK  7(4Q35.2) MUTATED    1  8
  DEL PEAK  7(4Q35.2) WILD-TYPE 13 35
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  7(4Q35.2) MUTATED      1    8
  DEL PEAK  7(4Q35.2) WILD-TYPE   13   35
   clus
vv  DEL PEAK  7(4Q35.2) MUTATED DEL PEAK  7(4Q35.2) WILD-TYPE
  0                           1                            13
  1                           8                            35
                               vv
clus                            M0 M1 MX
  DEL PEAK  7(4Q35.2) MUTATED    3  0  6
  DEL PEAK  7(4Q35.2) WILD-TYPE 29  2 17
D25V6, multiclass
    clus
vv   DEL PEAK  7(4Q35.2) MUTATED DEL PEAK  7(4Q35.2) WILD-TYPE
  M0                           3                            29
  M1                           0                             2
  MX                           6                            17
D25V7, binary
                               cls
clus                             0  1
  DEL PEAK  7(4Q35.2) MUTATED    4  5
  DEL PEAK  7(4Q35.2) WILD-TYPE 27 21
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  7(4Q35.2) MUTATED      4    5
  DEL PEAK  7(4Q35.2) WILD-TYPE   27   21
        clus
vv       DEL PEAK  7(4Q35.2) MUTATED DEL PEAK  7(4Q35.2) WILD-TYPE
  FEMALE                           4                            27
  MALE                             5                            21
                               vv
clus                            PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  DEL PEAK  7(4Q35.2) MUTATED                                     9
  DEL PEAK  7(4Q35.2) WILD-TYPE                                  42
                               vv
clus                            PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  DEL PEAK  7(4Q35.2) MUTATED                                       0
  DEL PEAK  7(4Q35.2) WILD-TYPE                                     4
                               vv
clus                            PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  DEL PEAK  7(4Q35.2) MUTATED                                                  0
  DEL PEAK  7(4Q35.2) WILD-TYPE                                                1
D25V8, multiclass
                                                  clus
vv                                                 DEL PEAK  7(4Q35.2) MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                        9
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                      0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                           0
                                                  clus
vv                                                 DEL PEAK  7(4Q35.2) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                         42
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                        4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                             1
D25V9, continuous
[1] "Remove cluster labels:"      "DEL PEAK  7(4Q35.2) MUTATED"
clus
  DEL PEAK  7(4Q35.2) MUTATED DEL PEAK  7(4Q35.2) WILD-TYPE 
                            1                            13 
                   TCGA-F2-6880                    TCGA-FB-A4P5 
"DEL PEAK  7(4Q35.2) WILD-TYPE" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-H6-8124                    TCGA-H6-A45N 
"DEL PEAK  7(4Q35.2) WILD-TYPE" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-IB-7644                    TCGA-IB-7649 
"DEL PEAK  7(4Q35.2) WILD-TYPE" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-IB-7651                    TCGA-IB-7885 
"DEL PEAK  7(4Q35.2) WILD-TYPE" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-IB-7887                    TCGA-IB-7891 
"DEL PEAK  7(4Q35.2) WILD-TYPE" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-IB-8126                    TCGA-IB-8127 
"DEL PEAK  7(4Q35.2) WILD-TYPE" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-IB-A5SS 
"DEL PEAK  7(4Q35.2) WILD-TYPE" 
D25V10, continuous
[1] "Remove cluster labels:"      "DEL PEAK  7(4Q35.2) MUTATED"
clus
  DEL PEAK  7(4Q35.2) MUTATED DEL PEAK  7(4Q35.2) WILD-TYPE 
                            1                            10 
                   TCGA-FB-A4P5                    TCGA-H6-8124 
"DEL PEAK  7(4Q35.2) WILD-TYPE" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-IB-7644                    TCGA-IB-7649 
"DEL PEAK  7(4Q35.2) WILD-TYPE" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-IB-7651                    TCGA-IB-7885 
"DEL PEAK  7(4Q35.2) WILD-TYPE" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-IB-7891                    TCGA-IB-8126 
"DEL PEAK  7(4Q35.2) WILD-TYPE" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-IB-8127                    TCGA-IB-A5SS 
"DEL PEAK  7(4Q35.2) WILD-TYPE" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                               vv
clus                            R0 R1 RX
  DEL PEAK  7(4Q35.2) MUTATED    3  6  0
  DEL PEAK  7(4Q35.2) WILD-TYPE 29 15  2
D25V11, multiclass
    clus
vv   DEL PEAK  7(4Q35.2) MUTATED DEL PEAK  7(4Q35.2) WILD-TYPE
  R0                           3                            29
  R1                           6                            15
  RX                           0                             2
D25V12, continuous

Clustering(26) Variable = DEL PEAK  8(5Q14.2) MUTATION ANALYSIS
D26V1, survival
                               sevent
clus2                            0  1
  DEL PEAK  8(5Q14.2) MUTATED    6  2
  DEL PEAK  8(5Q14.2) WILD-TYPE 29 17
  DEL PEAK  8(5Q14.2) MUTATED DEL PEAK  8(5Q14.2) WILD-TYPE 
                            8                            46 
  DEL PEAK  8(5Q14.2) MUTATED DEL PEAK  8(5Q14.2) WILD-TYPE 
                            2                            17 
$`DEL PEAK  8(5Q14.2) MUTATED`
TCGA-FB-A545 TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7922 TCGA-HZ-8005 TCGA-IB-7652 
        0.03         7.86         0.92         0.13         3.91        15.65 
TCGA-IB-7893 TCGA-IB-8127 
        3.85        17.13 

$`DEL PEAK  8(5Q14.2) WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.96        11.84         7.07         5.03         5.19 
TCGA-FB-A4P5 TCGA-H6-8124 TCGA-H6-A45N TCGA-HZ-7919 TCGA-HZ-7923 TCGA-HZ-7924 
        0.13        12.89         7.63         0.66         0.26        12.13 
TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8315 
       12.03         0.26         0.62         0.99         0.69         0.92 
TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H 
        0.49         0.10         0.16         2.96         0.76         1.02 
TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 
        5.98         1.51        11.41        49.38         4.77        21.86 
TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 
       15.35        19.82        27.98         4.04         3.58        43.79 
TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-A5SO 
       15.78        19.66        16.04        15.95         0.56        10.82 
TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST 
        9.83         7.20        15.12         0.26 

  DEL PEAK  8(5Q14.2) MUTATED DEL PEAK  8(5Q14.2) WILD-TYPE 
                         0.03                          0.10 
  DEL PEAK  8(5Q14.2) MUTATED DEL PEAK  8(5Q14.2) WILD-TYPE 
                        17.13                         49.38 
  DEL PEAK  8(5Q14.2) MUTATED DEL PEAK  8(5Q14.2) WILD-TYPE 
                        3.880                         6.525 
[1] "0.0 - 17.1 (3.9)" "0.1 - 49.4 (6.5)"
                   TCGA-F2-6879                    TCGA-F2-6880 
"DEL PEAK  8(5Q14.2) WILD-TYPE" "DEL PEAK  8(5Q14.2) WILD-TYPE" 
                   TCGA-F2-7273                    TCGA-F2-7276 
"DEL PEAK  8(5Q14.2) WILD-TYPE" "DEL PEAK  8(5Q14.2) WILD-TYPE" 
                   TCGA-F2-A44G                    TCGA-F2-A44H 
"DEL PEAK  8(5Q14.2) WILD-TYPE" "DEL PEAK  8(5Q14.2) WILD-TYPE" 
                   TCGA-FB-A4P5                    TCGA-FB-A545 
"DEL PEAK  8(5Q14.2) WILD-TYPE"   "DEL PEAK  8(5Q14.2) MUTATED" 
                   TCGA-H6-8124                    TCGA-H6-A45N 
"DEL PEAK  8(5Q14.2) WILD-TYPE" "DEL PEAK  8(5Q14.2) WILD-TYPE" 
                   TCGA-HZ-7289                    TCGA-HZ-7918 
  "DEL PEAK  8(5Q14.2) MUTATED"   "DEL PEAK  8(5Q14.2) MUTATED" 
                   TCGA-HZ-7919                    TCGA-HZ-7922 
"DEL PEAK  8(5Q14.2) WILD-TYPE"   "DEL PEAK  8(5Q14.2) MUTATED" 
                   TCGA-HZ-7923                    TCGA-HZ-7924 
"DEL PEAK  8(5Q14.2) WILD-TYPE" "DEL PEAK  8(5Q14.2) WILD-TYPE" 
                   TCGA-HZ-7925                    TCGA-HZ-7926 
"DEL PEAK  8(5Q14.2) WILD-TYPE" "DEL PEAK  8(5Q14.2) WILD-TYPE" 
                   TCGA-HZ-8001                    TCGA-HZ-8002 
"DEL PEAK  8(5Q14.2) WILD-TYPE" "DEL PEAK  8(5Q14.2) WILD-TYPE" 
                   TCGA-HZ-8003                    TCGA-HZ-8005 
"DEL PEAK  8(5Q14.2) WILD-TYPE"   "DEL PEAK  8(5Q14.2) MUTATED" 
                   TCGA-HZ-8315                    TCGA-HZ-8317 
"DEL PEAK  8(5Q14.2) WILD-TYPE" "DEL PEAK  8(5Q14.2) WILD-TYPE" 
                   TCGA-HZ-8519                    TCGA-HZ-8636 
"DEL PEAK  8(5Q14.2) WILD-TYPE" "DEL PEAK  8(5Q14.2) WILD-TYPE" 
                   TCGA-HZ-8638                    TCGA-HZ-A49G 
"DEL PEAK  8(5Q14.2) WILD-TYPE" "DEL PEAK  8(5Q14.2) WILD-TYPE" 
                   TCGA-HZ-A49H                    TCGA-HZ-A4BH 
"DEL PEAK  8(5Q14.2) WILD-TYPE" "DEL PEAK  8(5Q14.2) WILD-TYPE" 
                   TCGA-HZ-A4BK                    TCGA-IB-7644 
"DEL PEAK  8(5Q14.2) WILD-TYPE" "DEL PEAK  8(5Q14.2) WILD-TYPE" 
                   TCGA-IB-7645                    TCGA-IB-7646 
"DEL PEAK  8(5Q14.2) WILD-TYPE" "DEL PEAK  8(5Q14.2) WILD-TYPE" 
                   TCGA-IB-7647                    TCGA-IB-7649 
"DEL PEAK  8(5Q14.2) WILD-TYPE" "DEL PEAK  8(5Q14.2) WILD-TYPE" 
                   TCGA-IB-7651                    TCGA-IB-7652 
"DEL PEAK  8(5Q14.2) WILD-TYPE"   "DEL PEAK  8(5Q14.2) MUTATED" 
                   TCGA-IB-7885                    TCGA-IB-7886 
"DEL PEAK  8(5Q14.2) WILD-TYPE" "DEL PEAK  8(5Q14.2) WILD-TYPE" 
                   TCGA-IB-7887                    TCGA-IB-7888 
"DEL PEAK  8(5Q14.2) WILD-TYPE" "DEL PEAK  8(5Q14.2) WILD-TYPE" 
                   TCGA-IB-7889                    TCGA-IB-7890 
"DEL PEAK  8(5Q14.2) WILD-TYPE" "DEL PEAK  8(5Q14.2) WILD-TYPE" 
                   TCGA-IB-7891                    TCGA-IB-7893 
"DEL PEAK  8(5Q14.2) WILD-TYPE"   "DEL PEAK  8(5Q14.2) MUTATED" 
                   TCGA-IB-7897                    TCGA-IB-8126 
"DEL PEAK  8(5Q14.2) WILD-TYPE" "DEL PEAK  8(5Q14.2) WILD-TYPE" 
                   TCGA-IB-8127                    TCGA-IB-A5SO 
  "DEL PEAK  8(5Q14.2) MUTATED" "DEL PEAK  8(5Q14.2) WILD-TYPE" 
                   TCGA-IB-A5SP                    TCGA-IB-A5SQ 
"DEL PEAK  8(5Q14.2) WILD-TYPE" "DEL PEAK  8(5Q14.2) WILD-TYPE" 
                   TCGA-IB-A5SS                    TCGA-IB-A5ST 
"DEL PEAK  8(5Q14.2) WILD-TYPE" "DEL PEAK  8(5Q14.2) WILD-TYPE" 
                   TCGA-F2-6879                    TCGA-F2-6880 
"DEL PEAK  8(5Q14.2) WILD-TYPE" "DEL PEAK  8(5Q14.2) WILD-TYPE" 
                   TCGA-F2-7273                    TCGA-F2-7276 
"DEL PEAK  8(5Q14.2) WILD-TYPE" "DEL PEAK  8(5Q14.2) WILD-TYPE" 
                   TCGA-F2-A44G                    TCGA-F2-A44H 
"DEL PEAK  8(5Q14.2) WILD-TYPE" "DEL PEAK  8(5Q14.2) WILD-TYPE" 
                   TCGA-FB-A4P5                    TCGA-FB-A545 
"DEL PEAK  8(5Q14.2) WILD-TYPE"   "DEL PEAK  8(5Q14.2) MUTATED" 
                   TCGA-H6-8124                    TCGA-H6-A45N 
"DEL PEAK  8(5Q14.2) WILD-TYPE" "DEL PEAK  8(5Q14.2) WILD-TYPE" 
                   TCGA-HZ-7289                    TCGA-HZ-7918 
  "DEL PEAK  8(5Q14.2) MUTATED"   "DEL PEAK  8(5Q14.2) MUTATED" 
                   TCGA-HZ-7919                    TCGA-HZ-7922 
"DEL PEAK  8(5Q14.2) WILD-TYPE"   "DEL PEAK  8(5Q14.2) MUTATED" 
                   TCGA-HZ-7923                    TCGA-HZ-7924 
"DEL PEAK  8(5Q14.2) WILD-TYPE" "DEL PEAK  8(5Q14.2) WILD-TYPE" 
                   TCGA-HZ-7925                    TCGA-HZ-7926 
"DEL PEAK  8(5Q14.2) WILD-TYPE" "DEL PEAK  8(5Q14.2) WILD-TYPE" 
                   TCGA-HZ-8001                    TCGA-HZ-8002 
"DEL PEAK  8(5Q14.2) WILD-TYPE" "DEL PEAK  8(5Q14.2) WILD-TYPE" 
                   TCGA-HZ-8003                    TCGA-HZ-8005 
"DEL PEAK  8(5Q14.2) WILD-TYPE"   "DEL PEAK  8(5Q14.2) MUTATED" 
                   TCGA-HZ-8315                    TCGA-HZ-8317 
"DEL PEAK  8(5Q14.2) WILD-TYPE" "DEL PEAK  8(5Q14.2) WILD-TYPE" 
                   TCGA-HZ-8519                    TCGA-HZ-8636 
"DEL PEAK  8(5Q14.2) WILD-TYPE" "DEL PEAK  8(5Q14.2) WILD-TYPE" 
                   TCGA-HZ-8638                    TCGA-HZ-A49G 
"DEL PEAK  8(5Q14.2) WILD-TYPE" "DEL PEAK  8(5Q14.2) WILD-TYPE" 
                   TCGA-HZ-A49H                    TCGA-HZ-A4BH 
"DEL PEAK  8(5Q14.2) WILD-TYPE" "DEL PEAK  8(5Q14.2) WILD-TYPE" 
                   TCGA-HZ-A4BK                    TCGA-IB-7644 
"DEL PEAK  8(5Q14.2) WILD-TYPE" "DEL PEAK  8(5Q14.2) WILD-TYPE" 
                   TCGA-IB-7645                    TCGA-IB-7646 
"DEL PEAK  8(5Q14.2) WILD-TYPE" "DEL PEAK  8(5Q14.2) WILD-TYPE" 
                   TCGA-IB-7647                    TCGA-IB-7649 
"DEL PEAK  8(5Q14.2) WILD-TYPE" "DEL PEAK  8(5Q14.2) WILD-TYPE" 
                   TCGA-IB-7651                    TCGA-IB-7652 
"DEL PEAK  8(5Q14.2) WILD-TYPE"   "DEL PEAK  8(5Q14.2) MUTATED" 
                   TCGA-IB-7885                    TCGA-IB-7886 
"DEL PEAK  8(5Q14.2) WILD-TYPE" "DEL PEAK  8(5Q14.2) WILD-TYPE" 
                   TCGA-IB-7887                    TCGA-IB-7888 
"DEL PEAK  8(5Q14.2) WILD-TYPE" "DEL PEAK  8(5Q14.2) WILD-TYPE" 
                   TCGA-IB-7889                    TCGA-IB-7890 
"DEL PEAK  8(5Q14.2) WILD-TYPE" "DEL PEAK  8(5Q14.2) WILD-TYPE" 
                   TCGA-IB-7891                    TCGA-IB-7893 
"DEL PEAK  8(5Q14.2) WILD-TYPE"   "DEL PEAK  8(5Q14.2) MUTATED" 
                   TCGA-IB-7897                    TCGA-IB-8126 
"DEL PEAK  8(5Q14.2) WILD-TYPE" "DEL PEAK  8(5Q14.2) WILD-TYPE" 
                   TCGA-IB-8127                    TCGA-IB-A5SO 
  "DEL PEAK  8(5Q14.2) MUTATED" "DEL PEAK  8(5Q14.2) WILD-TYPE" 
                   TCGA-IB-A5SP                    TCGA-IB-A5SQ 
"DEL PEAK  8(5Q14.2) WILD-TYPE" "DEL PEAK  8(5Q14.2) WILD-TYPE" 
                   TCGA-IB-A5SS                    TCGA-IB-A5ST 
"DEL PEAK  8(5Q14.2) WILD-TYPE" "DEL PEAK  8(5Q14.2) WILD-TYPE" 
                   TCGA-F2-6879                    TCGA-F2-6880 
"DEL PEAK  8(5Q14.2) WILD-TYPE" "DEL PEAK  8(5Q14.2) WILD-TYPE" 
                   TCGA-F2-7273                    TCGA-F2-7276 
"DEL PEAK  8(5Q14.2) WILD-TYPE" "DEL PEAK  8(5Q14.2) WILD-TYPE" 
                   TCGA-F2-A44G                    TCGA-F2-A44H 
"DEL PEAK  8(5Q14.2) WILD-TYPE" "DEL PEAK  8(5Q14.2) WILD-TYPE" 
                   TCGA-FB-A4P5                    TCGA-FB-A545 
"DEL PEAK  8(5Q14.2) WILD-TYPE"   "DEL PEAK  8(5Q14.2) MUTATED" 
                   TCGA-H6-8124                    TCGA-H6-A45N 
"DEL PEAK  8(5Q14.2) WILD-TYPE" "DEL PEAK  8(5Q14.2) WILD-TYPE" 
                   TCGA-HZ-7289                    TCGA-HZ-7918 
  "DEL PEAK  8(5Q14.2) MUTATED"   "DEL PEAK  8(5Q14.2) MUTATED" 
                   TCGA-HZ-7919                    TCGA-HZ-7922 
"DEL PEAK  8(5Q14.2) WILD-TYPE"   "DEL PEAK  8(5Q14.2) MUTATED" 
                   TCGA-HZ-7923                    TCGA-HZ-7924 
"DEL PEAK  8(5Q14.2) WILD-TYPE" "DEL PEAK  8(5Q14.2) WILD-TYPE" 
                   TCGA-HZ-7925                    TCGA-HZ-7926 
"DEL PEAK  8(5Q14.2) WILD-TYPE" "DEL PEAK  8(5Q14.2) WILD-TYPE" 
                   TCGA-HZ-8001                    TCGA-HZ-8002 
"DEL PEAK  8(5Q14.2) WILD-TYPE" "DEL PEAK  8(5Q14.2) WILD-TYPE" 
                   TCGA-HZ-8003                    TCGA-HZ-8005 
"DEL PEAK  8(5Q14.2) WILD-TYPE"   "DEL PEAK  8(5Q14.2) MUTATED" 
                   TCGA-HZ-8315                    TCGA-HZ-8317 
"DEL PEAK  8(5Q14.2) WILD-TYPE" "DEL PEAK  8(5Q14.2) WILD-TYPE" 
                   TCGA-HZ-8519                    TCGA-HZ-8636 
"DEL PEAK  8(5Q14.2) WILD-TYPE" "DEL PEAK  8(5Q14.2) WILD-TYPE" 
                   TCGA-HZ-8638                    TCGA-HZ-A49G 
"DEL PEAK  8(5Q14.2) WILD-TYPE" "DEL PEAK  8(5Q14.2) WILD-TYPE" 
                   TCGA-HZ-A49H                    TCGA-HZ-A4BH 
"DEL PEAK  8(5Q14.2) WILD-TYPE" "DEL PEAK  8(5Q14.2) WILD-TYPE" 
                   TCGA-HZ-A4BK                    TCGA-IB-7644 
"DEL PEAK  8(5Q14.2) WILD-TYPE" "DEL PEAK  8(5Q14.2) WILD-TYPE" 
                   TCGA-IB-7645                    TCGA-IB-7646 
"DEL PEAK  8(5Q14.2) WILD-TYPE" "DEL PEAK  8(5Q14.2) WILD-TYPE" 
                   TCGA-IB-7647                    TCGA-IB-7649 
"DEL PEAK  8(5Q14.2) WILD-TYPE" "DEL PEAK  8(5Q14.2) WILD-TYPE" 
                   TCGA-IB-7651                    TCGA-IB-7652 
"DEL PEAK  8(5Q14.2) WILD-TYPE"   "DEL PEAK  8(5Q14.2) MUTATED" 
                   TCGA-IB-7885                    TCGA-IB-7886 
"DEL PEAK  8(5Q14.2) WILD-TYPE" "DEL PEAK  8(5Q14.2) WILD-TYPE" 
                   TCGA-IB-7887                    TCGA-IB-7888 
"DEL PEAK  8(5Q14.2) WILD-TYPE" "DEL PEAK  8(5Q14.2) WILD-TYPE" 
                   TCGA-IB-7889                    TCGA-IB-7890 
"DEL PEAK  8(5Q14.2) WILD-TYPE" "DEL PEAK  8(5Q14.2) WILD-TYPE" 
                   TCGA-IB-7891                    TCGA-IB-7893 
"DEL PEAK  8(5Q14.2) WILD-TYPE"   "DEL PEAK  8(5Q14.2) MUTATED" 
                   TCGA-IB-7897                    TCGA-IB-8126 
"DEL PEAK  8(5Q14.2) WILD-TYPE" "DEL PEAK  8(5Q14.2) WILD-TYPE" 
                   TCGA-IB-8127                    TCGA-IB-A5SO 
  "DEL PEAK  8(5Q14.2) MUTATED" "DEL PEAK  8(5Q14.2) WILD-TYPE" 
                   TCGA-IB-A5SP                    TCGA-IB-A5SQ 
"DEL PEAK  8(5Q14.2) WILD-TYPE" "DEL PEAK  8(5Q14.2) WILD-TYPE" 
                   TCGA-IB-A5SS                    TCGA-IB-A5ST 
"DEL PEAK  8(5Q14.2) WILD-TYPE" "DEL PEAK  8(5Q14.2) WILD-TYPE" 
[1] "hr=" "1.2"
D26V2, continuous
                               vv
clus                            STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III
  DEL PEAK  8(5Q14.2) MUTATED          0        0         1         8         0
  DEL PEAK  8(5Q14.2) WILD-TYPE        2        3         6        33         2
                               vv
clus                            STAGE IV
  DEL PEAK  8(5Q14.2) MUTATED          0
  DEL PEAK  8(5Q14.2) WILD-TYPE        2
D26V3, multiclass
                               vv
clus                            T1+T2 T3+T4
  DEL PEAK  8(5Q14.2) MUTATED       0     9
  DEL PEAK  8(5Q14.2) WILD-TYPE     6    42
D26V4, multiclass
       clus
vv      DEL PEAK  8(5Q14.2) MUTATED DEL PEAK  8(5Q14.2) WILD-TYPE
  T1+T2                           0                             6
  T3+T4                           9                            42
D26V5, binary
                               cls
clus                             0  1
  DEL PEAK  8(5Q14.2) MUTATED    1  8
  DEL PEAK  8(5Q14.2) WILD-TYPE 13 35
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  8(5Q14.2) MUTATED      1    8
  DEL PEAK  8(5Q14.2) WILD-TYPE   13   35
   clus
vv  DEL PEAK  8(5Q14.2) MUTATED DEL PEAK  8(5Q14.2) WILD-TYPE
  0                           1                            13
  1                           8                            35
                               vv
clus                            M0 M1 MX
  DEL PEAK  8(5Q14.2) MUTATED    5  0  4
  DEL PEAK  8(5Q14.2) WILD-TYPE 27  2 19
D26V6, multiclass
    clus
vv   DEL PEAK  8(5Q14.2) MUTATED DEL PEAK  8(5Q14.2) WILD-TYPE
  M0                           5                            27
  M1                           0                             2
  MX                           4                            19
D26V7, binary
                               cls
clus                             0  1
  DEL PEAK  8(5Q14.2) MUTATED    4  5
  DEL PEAK  8(5Q14.2) WILD-TYPE 27 21
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  8(5Q14.2) MUTATED      4    5
  DEL PEAK  8(5Q14.2) WILD-TYPE   27   21
        clus
vv       DEL PEAK  8(5Q14.2) MUTATED DEL PEAK  8(5Q14.2) WILD-TYPE
  FEMALE                           4                            27
  MALE                             5                            21
                               vv
clus                            PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  DEL PEAK  8(5Q14.2) MUTATED                                     8
  DEL PEAK  8(5Q14.2) WILD-TYPE                                  43
                               vv
clus                            PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  DEL PEAK  8(5Q14.2) MUTATED                                       1
  DEL PEAK  8(5Q14.2) WILD-TYPE                                     3
                               vv
clus                            PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  DEL PEAK  8(5Q14.2) MUTATED                                                  0
  DEL PEAK  8(5Q14.2) WILD-TYPE                                                1
D26V8, multiclass
                                                  clus
vv                                                 DEL PEAK  8(5Q14.2) MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                        8
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                      1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                           0
                                                  clus
vv                                                 DEL PEAK  8(5Q14.2) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                         43
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                        3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                             1
D26V9, continuous
[1] "Remove cluster labels:"      "DEL PEAK  8(5Q14.2) MUTATED"
clus
  DEL PEAK  8(5Q14.2) MUTATED DEL PEAK  8(5Q14.2) WILD-TYPE 
                            1                            13 
                   TCGA-F2-6880                    TCGA-FB-A4P5 
"DEL PEAK  8(5Q14.2) WILD-TYPE" "DEL PEAK  8(5Q14.2) WILD-TYPE" 
                   TCGA-H6-8124                    TCGA-H6-A45N 
"DEL PEAK  8(5Q14.2) WILD-TYPE" "DEL PEAK  8(5Q14.2) WILD-TYPE" 
                   TCGA-IB-7644                    TCGA-IB-7649 
"DEL PEAK  8(5Q14.2) WILD-TYPE" "DEL PEAK  8(5Q14.2) WILD-TYPE" 
                   TCGA-IB-7651                    TCGA-IB-7885 
"DEL PEAK  8(5Q14.2) WILD-TYPE" "DEL PEAK  8(5Q14.2) WILD-TYPE" 
                   TCGA-IB-7886                    TCGA-IB-7887 
"DEL PEAK  8(5Q14.2) WILD-TYPE" "DEL PEAK  8(5Q14.2) WILD-TYPE" 
                   TCGA-IB-7891                    TCGA-IB-8126 
"DEL PEAK  8(5Q14.2) WILD-TYPE" "DEL PEAK  8(5Q14.2) WILD-TYPE" 
                   TCGA-IB-A5SS 
"DEL PEAK  8(5Q14.2) WILD-TYPE" 
D26V10, continuous
[1] "Remove cluster labels:"      "DEL PEAK  8(5Q14.2) MUTATED"
clus
  DEL PEAK  8(5Q14.2) MUTATED DEL PEAK  8(5Q14.2) WILD-TYPE 
                            1                            10 
                   TCGA-FB-A4P5                    TCGA-H6-8124 
"DEL PEAK  8(5Q14.2) WILD-TYPE" "DEL PEAK  8(5Q14.2) WILD-TYPE" 
                   TCGA-IB-7644                    TCGA-IB-7649 
"DEL PEAK  8(5Q14.2) WILD-TYPE" "DEL PEAK  8(5Q14.2) WILD-TYPE" 
                   TCGA-IB-7651                    TCGA-IB-7885 
"DEL PEAK  8(5Q14.2) WILD-TYPE" "DEL PEAK  8(5Q14.2) WILD-TYPE" 
                   TCGA-IB-7886                    TCGA-IB-7891 
"DEL PEAK  8(5Q14.2) WILD-TYPE" "DEL PEAK  8(5Q14.2) WILD-TYPE" 
                   TCGA-IB-8126                    TCGA-IB-A5SS 
"DEL PEAK  8(5Q14.2) WILD-TYPE" "DEL PEAK  8(5Q14.2) WILD-TYPE" 
                               vv
clus                            R0 R1 RX
  DEL PEAK  8(5Q14.2) MUTATED    4  3  1
  DEL PEAK  8(5Q14.2) WILD-TYPE 28 18  1
D26V11, multiclass
    clus
vv   DEL PEAK  8(5Q14.2) MUTATED DEL PEAK  8(5Q14.2) WILD-TYPE
  R0                           4                            28
  R1                           3                            18
  RX                           1                             1
D26V12, continuous

Clustering(27) Variable = DEL PEAK  9(6P25.2) MUTATION ANALYSIS
D27V1, survival
                               sevent
clus2                            0  1
  DEL PEAK  9(6P25.2) MUTATED   12  9
  DEL PEAK  9(6P25.2) WILD-TYPE 23 10
  DEL PEAK  9(6P25.2) MUTATED DEL PEAK  9(6P25.2) WILD-TYPE 
                           21                            33 
  DEL PEAK  9(6P25.2) MUTATED DEL PEAK  9(6P25.2) WILD-TYPE 
                            9                            10 
$`DEL PEAK  9(6P25.2) MUTATED`
TCGA-F2-6879 TCGA-F2-A44H TCGA-FB-A545 TCGA-H6-8124 TCGA-HZ-7289 TCGA-HZ-7918 
       10.98         5.19         0.03        12.89         7.86         0.92 
TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-8001 TCGA-HZ-8315 TCGA-HZ-A4BK TCGA-IB-7646 
        0.66         0.13         0.62         0.92         1.51         4.77 
TCGA-IB-7647 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7893 
       21.86         4.04         3.58        15.78        19.66         3.85 
TCGA-IB-8127 TCGA-IB-A5SP TCGA-IB-A5SS 
       17.13         9.83        15.12 

$`DEL PEAK  9(6P25.2) WILD-TYPE`
TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-FB-A4P5 TCGA-H6-A45N 
        9.96        11.84         7.07         5.03         0.13         7.63 
TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8002 TCGA-HZ-8003 
        0.26        12.13        12.03         0.26         0.99         0.69 
TCGA-HZ-8005 TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G 
        3.91         0.49         0.10         0.16         2.96         0.76 
TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7649 TCGA-IB-7651 
        1.02         5.98        11.41        49.38        15.35        19.82 
TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7888 TCGA-IB-7891 TCGA-IB-7897 TCGA-IB-8126 
       15.65        27.98        43.79        16.04        15.95         0.56 
TCGA-IB-A5SO TCGA-IB-A5SQ TCGA-IB-A5ST 
       10.82         7.20         0.26 

  DEL PEAK  9(6P25.2) MUTATED DEL PEAK  9(6P25.2) WILD-TYPE 
                         0.03                          0.10 
  DEL PEAK  9(6P25.2) MUTATED DEL PEAK  9(6P25.2) WILD-TYPE 
                        21.86                         49.38 
  DEL PEAK  9(6P25.2) MUTATED DEL PEAK  9(6P25.2) WILD-TYPE 
                         4.77                          7.07 
[1] "0.0 - 21.9 (4.8)" "0.1 - 49.4 (7.1)"
                   TCGA-F2-6879                    TCGA-F2-6880 
  "DEL PEAK  9(6P25.2) MUTATED" "DEL PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-F2-7273                    TCGA-F2-7276 
"DEL PEAK  9(6P25.2) WILD-TYPE" "DEL PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-F2-A44G                    TCGA-F2-A44H 
"DEL PEAK  9(6P25.2) WILD-TYPE"   "DEL PEAK  9(6P25.2) MUTATED" 
                   TCGA-FB-A4P5                    TCGA-FB-A545 
"DEL PEAK  9(6P25.2) WILD-TYPE"   "DEL PEAK  9(6P25.2) MUTATED" 
                   TCGA-H6-8124                    TCGA-H6-A45N 
  "DEL PEAK  9(6P25.2) MUTATED" "DEL PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-HZ-7289                    TCGA-HZ-7918 
  "DEL PEAK  9(6P25.2) MUTATED"   "DEL PEAK  9(6P25.2) MUTATED" 
                   TCGA-HZ-7919                    TCGA-HZ-7922 
  "DEL PEAK  9(6P25.2) MUTATED"   "DEL PEAK  9(6P25.2) MUTATED" 
                   TCGA-HZ-7923                    TCGA-HZ-7924 
"DEL PEAK  9(6P25.2) WILD-TYPE" "DEL PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-HZ-7925                    TCGA-HZ-7926 
"DEL PEAK  9(6P25.2) WILD-TYPE" "DEL PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-HZ-8001                    TCGA-HZ-8002 
  "DEL PEAK  9(6P25.2) MUTATED" "DEL PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-HZ-8003                    TCGA-HZ-8005 
"DEL PEAK  9(6P25.2) WILD-TYPE" "DEL PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-HZ-8315                    TCGA-HZ-8317 
  "DEL PEAK  9(6P25.2) MUTATED" "DEL PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-HZ-8519                    TCGA-HZ-8636 
"DEL PEAK  9(6P25.2) WILD-TYPE" "DEL PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-HZ-8638                    TCGA-HZ-A49G 
"DEL PEAK  9(6P25.2) WILD-TYPE" "DEL PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-HZ-A49H                    TCGA-HZ-A4BH 
"DEL PEAK  9(6P25.2) WILD-TYPE" "DEL PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-HZ-A4BK                    TCGA-IB-7644 
  "DEL PEAK  9(6P25.2) MUTATED" "DEL PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-IB-7645                    TCGA-IB-7646 
"DEL PEAK  9(6P25.2) WILD-TYPE"   "DEL PEAK  9(6P25.2) MUTATED" 
                   TCGA-IB-7647                    TCGA-IB-7649 
  "DEL PEAK  9(6P25.2) MUTATED" "DEL PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-IB-7651                    TCGA-IB-7652 
"DEL PEAK  9(6P25.2) WILD-TYPE" "DEL PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-IB-7885                    TCGA-IB-7886 
"DEL PEAK  9(6P25.2) WILD-TYPE"   "DEL PEAK  9(6P25.2) MUTATED" 
                   TCGA-IB-7887                    TCGA-IB-7888 
  "DEL PEAK  9(6P25.2) MUTATED" "DEL PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-IB-7889                    TCGA-IB-7890 
  "DEL PEAK  9(6P25.2) MUTATED"   "DEL PEAK  9(6P25.2) MUTATED" 
                   TCGA-IB-7891                    TCGA-IB-7893 
"DEL PEAK  9(6P25.2) WILD-TYPE"   "DEL PEAK  9(6P25.2) MUTATED" 
                   TCGA-IB-7897                    TCGA-IB-8126 
"DEL PEAK  9(6P25.2) WILD-TYPE" "DEL PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-IB-8127                    TCGA-IB-A5SO 
  "DEL PEAK  9(6P25.2) MUTATED" "DEL PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-IB-A5SP                    TCGA-IB-A5SQ 
  "DEL PEAK  9(6P25.2) MUTATED" "DEL PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-IB-A5SS                    TCGA-IB-A5ST 
  "DEL PEAK  9(6P25.2) MUTATED" "DEL PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-F2-6879                    TCGA-F2-6880 
  "DEL PEAK  9(6P25.2) MUTATED" "DEL PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-F2-7273                    TCGA-F2-7276 
"DEL PEAK  9(6P25.2) WILD-TYPE" "DEL PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-F2-A44G                    TCGA-F2-A44H 
"DEL PEAK  9(6P25.2) WILD-TYPE"   "DEL PEAK  9(6P25.2) MUTATED" 
                   TCGA-FB-A4P5                    TCGA-FB-A545 
"DEL PEAK  9(6P25.2) WILD-TYPE"   "DEL PEAK  9(6P25.2) MUTATED" 
                   TCGA-H6-8124                    TCGA-H6-A45N 
  "DEL PEAK  9(6P25.2) MUTATED" "DEL PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-HZ-7289                    TCGA-HZ-7918 
  "DEL PEAK  9(6P25.2) MUTATED"   "DEL PEAK  9(6P25.2) MUTATED" 
                   TCGA-HZ-7919                    TCGA-HZ-7922 
  "DEL PEAK  9(6P25.2) MUTATED"   "DEL PEAK  9(6P25.2) MUTATED" 
                   TCGA-HZ-7923                    TCGA-HZ-7924 
"DEL PEAK  9(6P25.2) WILD-TYPE" "DEL PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-HZ-7925                    TCGA-HZ-7926 
"DEL PEAK  9(6P25.2) WILD-TYPE" "DEL PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-HZ-8001                    TCGA-HZ-8002 
  "DEL PEAK  9(6P25.2) MUTATED" "DEL PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-HZ-8003                    TCGA-HZ-8005 
"DEL PEAK  9(6P25.2) WILD-TYPE" "DEL PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-HZ-8315                    TCGA-HZ-8317 
  "DEL PEAK  9(6P25.2) MUTATED" "DEL PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-HZ-8519                    TCGA-HZ-8636 
"DEL PEAK  9(6P25.2) WILD-TYPE" "DEL PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-HZ-8638                    TCGA-HZ-A49G 
"DEL PEAK  9(6P25.2) WILD-TYPE" "DEL PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-HZ-A49H                    TCGA-HZ-A4BH 
"DEL PEAK  9(6P25.2) WILD-TYPE" "DEL PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-HZ-A4BK                    TCGA-IB-7644 
  "DEL PEAK  9(6P25.2) MUTATED" "DEL PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-IB-7645                    TCGA-IB-7646 
"DEL PEAK  9(6P25.2) WILD-TYPE"   "DEL PEAK  9(6P25.2) MUTATED" 
                   TCGA-IB-7647                    TCGA-IB-7649 
  "DEL PEAK  9(6P25.2) MUTATED" "DEL PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-IB-7651                    TCGA-IB-7652 
"DEL PEAK  9(6P25.2) WILD-TYPE" "DEL PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-IB-7885                    TCGA-IB-7886 
"DEL PEAK  9(6P25.2) WILD-TYPE"   "DEL PEAK  9(6P25.2) MUTATED" 
                   TCGA-IB-7887                    TCGA-IB-7888 
  "DEL PEAK  9(6P25.2) MUTATED" "DEL PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-IB-7889                    TCGA-IB-7890 
  "DEL PEAK  9(6P25.2) MUTATED"   "DEL PEAK  9(6P25.2) MUTATED" 
                   TCGA-IB-7891                    TCGA-IB-7893 
"DEL PEAK  9(6P25.2) WILD-TYPE"   "DEL PEAK  9(6P25.2) MUTATED" 
                   TCGA-IB-7897                    TCGA-IB-8126 
"DEL PEAK  9(6P25.2) WILD-TYPE" "DEL PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-IB-8127                    TCGA-IB-A5SO 
  "DEL PEAK  9(6P25.2) MUTATED" "DEL PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-IB-A5SP                    TCGA-IB-A5SQ 
  "DEL PEAK  9(6P25.2) MUTATED" "DEL PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-IB-A5SS                    TCGA-IB-A5ST 
  "DEL PEAK  9(6P25.2) MUTATED" "DEL PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-F2-6879                    TCGA-F2-6880 
  "DEL PEAK  9(6P25.2) MUTATED" "DEL PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-F2-7273                    TCGA-F2-7276 
"DEL PEAK  9(6P25.2) WILD-TYPE" "DEL PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-F2-A44G                    TCGA-F2-A44H 
"DEL PEAK  9(6P25.2) WILD-TYPE"   "DEL PEAK  9(6P25.2) MUTATED" 
                   TCGA-FB-A4P5                    TCGA-FB-A545 
"DEL PEAK  9(6P25.2) WILD-TYPE"   "DEL PEAK  9(6P25.2) MUTATED" 
                   TCGA-H6-8124                    TCGA-H6-A45N 
  "DEL PEAK  9(6P25.2) MUTATED" "DEL PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-HZ-7289                    TCGA-HZ-7918 
  "DEL PEAK  9(6P25.2) MUTATED"   "DEL PEAK  9(6P25.2) MUTATED" 
                   TCGA-HZ-7919                    TCGA-HZ-7922 
  "DEL PEAK  9(6P25.2) MUTATED"   "DEL PEAK  9(6P25.2) MUTATED" 
                   TCGA-HZ-7923                    TCGA-HZ-7924 
"DEL PEAK  9(6P25.2) WILD-TYPE" "DEL PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-HZ-7925                    TCGA-HZ-7926 
"DEL PEAK  9(6P25.2) WILD-TYPE" "DEL PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-HZ-8001                    TCGA-HZ-8002 
  "DEL PEAK  9(6P25.2) MUTATED" "DEL PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-HZ-8003                    TCGA-HZ-8005 
"DEL PEAK  9(6P25.2) WILD-TYPE" "DEL PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-HZ-8315                    TCGA-HZ-8317 
  "DEL PEAK  9(6P25.2) MUTATED" "DEL PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-HZ-8519                    TCGA-HZ-8636 
"DEL PEAK  9(6P25.2) WILD-TYPE" "DEL PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-HZ-8638                    TCGA-HZ-A49G 
"DEL PEAK  9(6P25.2) WILD-TYPE" "DEL PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-HZ-A49H                    TCGA-HZ-A4BH 
"DEL PEAK  9(6P25.2) WILD-TYPE" "DEL PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-HZ-A4BK                    TCGA-IB-7644 
  "DEL PEAK  9(6P25.2) MUTATED" "DEL PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-IB-7645                    TCGA-IB-7646 
"DEL PEAK  9(6P25.2) WILD-TYPE"   "DEL PEAK  9(6P25.2) MUTATED" 
                   TCGA-IB-7647                    TCGA-IB-7649 
  "DEL PEAK  9(6P25.2) MUTATED" "DEL PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-IB-7651                    TCGA-IB-7652 
"DEL PEAK  9(6P25.2) WILD-TYPE" "DEL PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-IB-7885                    TCGA-IB-7886 
"DEL PEAK  9(6P25.2) WILD-TYPE"   "DEL PEAK  9(6P25.2) MUTATED" 
                   TCGA-IB-7887                    TCGA-IB-7888 
  "DEL PEAK  9(6P25.2) MUTATED" "DEL PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-IB-7889                    TCGA-IB-7890 
  "DEL PEAK  9(6P25.2) MUTATED"   "DEL PEAK  9(6P25.2) MUTATED" 
                   TCGA-IB-7891                    TCGA-IB-7893 
"DEL PEAK  9(6P25.2) WILD-TYPE"   "DEL PEAK  9(6P25.2) MUTATED" 
                   TCGA-IB-7897                    TCGA-IB-8126 
"DEL PEAK  9(6P25.2) WILD-TYPE" "DEL PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-IB-8127                    TCGA-IB-A5SO 
  "DEL PEAK  9(6P25.2) MUTATED" "DEL PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-IB-A5SP                    TCGA-IB-A5SQ 
  "DEL PEAK  9(6P25.2) MUTATED" "DEL PEAK  9(6P25.2) WILD-TYPE" 
                   TCGA-IB-A5SS                    TCGA-IB-A5ST 
  "DEL PEAK  9(6P25.2) MUTATED" "DEL PEAK  9(6P25.2) WILD-TYPE" 
[1] "hr=" "2.1"
D27V2, continuous
                               vv
clus                            STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III
  DEL PEAK  9(6P25.2) MUTATED          0        1         4        15         1
  DEL PEAK  9(6P25.2) WILD-TYPE        2        2         3        26         1
                               vv
clus                            STAGE IV
  DEL PEAK  9(6P25.2) MUTATED          0
  DEL PEAK  9(6P25.2) WILD-TYPE        2
D27V3, multiclass
                               vv
clus                            T1+T2 T3+T4
  DEL PEAK  9(6P25.2) MUTATED       1    20
  DEL PEAK  9(6P25.2) WILD-TYPE     5    31
D27V4, multiclass
       clus
vv      DEL PEAK  9(6P25.2) MUTATED DEL PEAK  9(6P25.2) WILD-TYPE
  T1+T2                           1                             5
  T3+T4                          20                            31
D27V5, binary
                               cls
clus                             0  1
  DEL PEAK  9(6P25.2) MUTATED    6 15
  DEL PEAK  9(6P25.2) WILD-TYPE  8 28
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  9(6P25.2) MUTATED      6   15
  DEL PEAK  9(6P25.2) WILD-TYPE    8   28
   clus
vv  DEL PEAK  9(6P25.2) MUTATED DEL PEAK  9(6P25.2) WILD-TYPE
  0                           6                             8
  1                          15                            28
                               vv
clus                            M0 M1 MX
  DEL PEAK  9(6P25.2) MUTATED   16  0  5
  DEL PEAK  9(6P25.2) WILD-TYPE 16  2 18
D27V6, multiclass
    clus
vv   DEL PEAK  9(6P25.2) MUTATED DEL PEAK  9(6P25.2) WILD-TYPE
  M0                          16                            16
  M1                           0                             2
  MX                           5                            18
D27V7, binary
                               cls
clus                             0  1
  DEL PEAK  9(6P25.2) MUTATED    9 12
  DEL PEAK  9(6P25.2) WILD-TYPE 22 14
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  9(6P25.2) MUTATED      9   12
  DEL PEAK  9(6P25.2) WILD-TYPE   22   14
        clus
vv       DEL PEAK  9(6P25.2) MUTATED DEL PEAK  9(6P25.2) WILD-TYPE
  FEMALE                           9                            22
  MALE                            12                            14
                               vv
clus                            PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  DEL PEAK  9(6P25.2) MUTATED                                    18
  DEL PEAK  9(6P25.2) WILD-TYPE                                  33
                               vv
clus                            PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  DEL PEAK  9(6P25.2) MUTATED                                       2
  DEL PEAK  9(6P25.2) WILD-TYPE                                     2
                               vv
clus                            PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  DEL PEAK  9(6P25.2) MUTATED                                                  0
  DEL PEAK  9(6P25.2) WILD-TYPE                                                1
D27V8, multiclass
                                                  clus
vv                                                 DEL PEAK  9(6P25.2) MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                       18
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                      2
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                           0
                                                  clus
vv                                                 DEL PEAK  9(6P25.2) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                         33
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                        2
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                             1
D27V9, continuous
D27V10, continuous
                               vv
clus                            R0 R1 RX
  DEL PEAK  9(6P25.2) MUTATED   10  9  1
  DEL PEAK  9(6P25.2) WILD-TYPE 22 12  1
D27V11, multiclass
    clus
vv   DEL PEAK  9(6P25.2) MUTATED DEL PEAK  9(6P25.2) WILD-TYPE
  R0                          10                            22
  R1                           9                            12
  RX                           1                             1
D27V12, continuous

Clustering(28) Variable = DEL PEAK 10(7Q36.1) MUTATION ANALYSIS
D28V1, survival
                               sevent
clus2                            0  1
  DEL PEAK 10(7Q36.1) MUTATED    3  2
  DEL PEAK 10(7Q36.1) WILD-TYPE 32 17
  DEL PEAK 10(7Q36.1) MUTATED DEL PEAK 10(7Q36.1) WILD-TYPE 
                            5                            49 
  DEL PEAK 10(7Q36.1) MUTATED DEL PEAK 10(7Q36.1) WILD-TYPE 
                            2                            17 
$`DEL PEAK 10(7Q36.1) MUTATED`
TCGA-H6-8124 TCGA-HZ-7922 TCGA-HZ-A4BH TCGA-IB-7646 TCGA-IB-7890 
       12.89         0.13         5.98         4.77        19.66 

$`DEL PEAK 10(7Q36.1) WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.96        11.84         7.07         5.03         5.19 
TCGA-FB-A4P5 TCGA-FB-A545 TCGA-H6-A45N TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 
        0.13         0.03         7.63         7.86         0.92         0.66 
TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 
        0.26        12.13        12.03         0.26         0.62         0.99 
TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8636 
        0.69         3.91         0.92         0.49         0.10         0.16 
TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 
        2.96         0.76         1.02         1.51        11.41        49.38 
TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 
       21.86        15.35        19.82        15.65        27.98         4.04 
TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 
        3.58        43.79        15.78        16.04         3.85        15.95 
TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS 
        0.56        17.13        10.82         9.83         7.20        15.12 
TCGA-IB-A5ST 
        0.26 

  DEL PEAK 10(7Q36.1) MUTATED DEL PEAK 10(7Q36.1) WILD-TYPE 
                         0.13                          0.03 
  DEL PEAK 10(7Q36.1) MUTATED DEL PEAK 10(7Q36.1) WILD-TYPE 
                        19.66                         49.38 
  DEL PEAK 10(7Q36.1) MUTATED DEL PEAK 10(7Q36.1) WILD-TYPE 
                         5.98                          5.19 
[1] "0.1 - 19.7 (6.0)" "0.0 - 49.4 (5.2)"
                   TCGA-F2-6879                    TCGA-F2-6880 
"DEL PEAK 10(7Q36.1) WILD-TYPE" "DEL PEAK 10(7Q36.1) WILD-TYPE" 
                   TCGA-F2-7273                    TCGA-F2-7276 
"DEL PEAK 10(7Q36.1) WILD-TYPE" "DEL PEAK 10(7Q36.1) WILD-TYPE" 
                   TCGA-F2-A44G                    TCGA-F2-A44H 
"DEL PEAK 10(7Q36.1) WILD-TYPE" "DEL PEAK 10(7Q36.1) WILD-TYPE" 
                   TCGA-FB-A4P5                    TCGA-FB-A545 
"DEL PEAK 10(7Q36.1) WILD-TYPE" "DEL PEAK 10(7Q36.1) WILD-TYPE" 
                   TCGA-H6-8124                    TCGA-H6-A45N 
  "DEL PEAK 10(7Q36.1) MUTATED" "DEL PEAK 10(7Q36.1) WILD-TYPE" 
                   TCGA-HZ-7289                    TCGA-HZ-7918 
"DEL PEAK 10(7Q36.1) WILD-TYPE" "DEL PEAK 10(7Q36.1) WILD-TYPE" 
                   TCGA-HZ-7919                    TCGA-HZ-7922 
"DEL PEAK 10(7Q36.1) WILD-TYPE"   "DEL PEAK 10(7Q36.1) MUTATED" 
                   TCGA-HZ-7923                    TCGA-HZ-7924 
"DEL PEAK 10(7Q36.1) WILD-TYPE" "DEL PEAK 10(7Q36.1) WILD-TYPE" 
                   TCGA-HZ-7925                    TCGA-HZ-7926 
"DEL PEAK 10(7Q36.1) WILD-TYPE" "DEL PEAK 10(7Q36.1) WILD-TYPE" 
                   TCGA-HZ-8001                    TCGA-HZ-8002 
"DEL PEAK 10(7Q36.1) WILD-TYPE" "DEL PEAK 10(7Q36.1) WILD-TYPE" 
                   TCGA-HZ-8003                    TCGA-HZ-8005 
"DEL PEAK 10(7Q36.1) WILD-TYPE" "DEL PEAK 10(7Q36.1) WILD-TYPE" 
                   TCGA-HZ-8315                    TCGA-HZ-8317 
"DEL PEAK 10(7Q36.1) WILD-TYPE" "DEL PEAK 10(7Q36.1) WILD-TYPE" 
                   TCGA-HZ-8519                    TCGA-HZ-8636 
"DEL PEAK 10(7Q36.1) WILD-TYPE" "DEL PEAK 10(7Q36.1) WILD-TYPE" 
                   TCGA-HZ-8638                    TCGA-HZ-A49G 
"DEL PEAK 10(7Q36.1) WILD-TYPE" "DEL PEAK 10(7Q36.1) WILD-TYPE" 
                   TCGA-HZ-A49H                    TCGA-HZ-A4BH 
"DEL PEAK 10(7Q36.1) WILD-TYPE"   "DEL PEAK 10(7Q36.1) MUTATED" 
                   TCGA-HZ-A4BK                    TCGA-IB-7644 
"DEL PEAK 10(7Q36.1) WILD-TYPE" "DEL PEAK 10(7Q36.1) WILD-TYPE" 
                   TCGA-IB-7645                    TCGA-IB-7646 
"DEL PEAK 10(7Q36.1) WILD-TYPE"   "DEL PEAK 10(7Q36.1) MUTATED" 
                   TCGA-IB-7647                    TCGA-IB-7649 
"DEL PEAK 10(7Q36.1) WILD-TYPE" "DEL PEAK 10(7Q36.1) WILD-TYPE" 
                   TCGA-IB-7651                    TCGA-IB-7652 
"DEL PEAK 10(7Q36.1) WILD-TYPE" "DEL PEAK 10(7Q36.1) WILD-TYPE" 
                   TCGA-IB-7885                    TCGA-IB-7886 
"DEL PEAK 10(7Q36.1) WILD-TYPE" "DEL PEAK 10(7Q36.1) WILD-TYPE" 
                   TCGA-IB-7887                    TCGA-IB-7888 
"DEL PEAK 10(7Q36.1) WILD-TYPE" "DEL PEAK 10(7Q36.1) WILD-TYPE" 
                   TCGA-IB-7889                    TCGA-IB-7890 
"DEL PEAK 10(7Q36.1) WILD-TYPE"   "DEL PEAK 10(7Q36.1) MUTATED" 
                   TCGA-IB-7891                    TCGA-IB-7893 
"DEL PEAK 10(7Q36.1) WILD-TYPE" "DEL PEAK 10(7Q36.1) WILD-TYPE" 
                   TCGA-IB-7897                    TCGA-IB-8126 
"DEL PEAK 10(7Q36.1) WILD-TYPE" "DEL PEAK 10(7Q36.1) WILD-TYPE" 
                   TCGA-IB-8127                    TCGA-IB-A5SO 
"DEL PEAK 10(7Q36.1) WILD-TYPE" "DEL PEAK 10(7Q36.1) WILD-TYPE" 
                   TCGA-IB-A5SP                    TCGA-IB-A5SQ 
"DEL PEAK 10(7Q36.1) WILD-TYPE" "DEL PEAK 10(7Q36.1) WILD-TYPE" 
                   TCGA-IB-A5SS                    TCGA-IB-A5ST 
"DEL PEAK 10(7Q36.1) WILD-TYPE" "DEL PEAK 10(7Q36.1) WILD-TYPE" 
                   TCGA-F2-6879                    TCGA-F2-6880 
"DEL PEAK 10(7Q36.1) WILD-TYPE" "DEL PEAK 10(7Q36.1) WILD-TYPE" 
                   TCGA-F2-7273                    TCGA-F2-7276 
"DEL PEAK 10(7Q36.1) WILD-TYPE" "DEL PEAK 10(7Q36.1) WILD-TYPE" 
                   TCGA-F2-A44G                    TCGA-F2-A44H 
"DEL PEAK 10(7Q36.1) WILD-TYPE" "DEL PEAK 10(7Q36.1) WILD-TYPE" 
                   TCGA-FB-A4P5                    TCGA-FB-A545 
"DEL PEAK 10(7Q36.1) WILD-TYPE" "DEL PEAK 10(7Q36.1) WILD-TYPE" 
                   TCGA-H6-8124                    TCGA-H6-A45N 
  "DEL PEAK 10(7Q36.1) MUTATED" "DEL PEAK 10(7Q36.1) WILD-TYPE" 
                   TCGA-HZ-7289                    TCGA-HZ-7918 
"DEL PEAK 10(7Q36.1) WILD-TYPE" "DEL PEAK 10(7Q36.1) WILD-TYPE" 
                   TCGA-HZ-7919                    TCGA-HZ-7922 
"DEL PEAK 10(7Q36.1) WILD-TYPE"   "DEL PEAK 10(7Q36.1) MUTATED" 
                   TCGA-HZ-7923                    TCGA-HZ-7924 
"DEL PEAK 10(7Q36.1) WILD-TYPE" "DEL PEAK 10(7Q36.1) WILD-TYPE" 
                   TCGA-HZ-7925                    TCGA-HZ-7926 
"DEL PEAK 10(7Q36.1) WILD-TYPE" "DEL PEAK 10(7Q36.1) WILD-TYPE" 
                   TCGA-HZ-8001                    TCGA-HZ-8002 
"DEL PEAK 10(7Q36.1) WILD-TYPE" "DEL PEAK 10(7Q36.1) WILD-TYPE" 
                   TCGA-HZ-8003                    TCGA-HZ-8005 
"DEL PEAK 10(7Q36.1) WILD-TYPE" "DEL PEAK 10(7Q36.1) WILD-TYPE" 
                   TCGA-HZ-8315                    TCGA-HZ-8317 
"DEL PEAK 10(7Q36.1) WILD-TYPE" "DEL PEAK 10(7Q36.1) WILD-TYPE" 
                   TCGA-HZ-8519                    TCGA-HZ-8636 
"DEL PEAK 10(7Q36.1) WILD-TYPE" "DEL PEAK 10(7Q36.1) WILD-TYPE" 
                   TCGA-HZ-8638                    TCGA-HZ-A49G 
"DEL PEAK 10(7Q36.1) WILD-TYPE" "DEL PEAK 10(7Q36.1) WILD-TYPE" 
                   TCGA-HZ-A49H                    TCGA-HZ-A4BH 
"DEL PEAK 10(7Q36.1) WILD-TYPE"   "DEL PEAK 10(7Q36.1) MUTATED" 
                   TCGA-HZ-A4BK                    TCGA-IB-7644 
"DEL PEAK 10(7Q36.1) WILD-TYPE" "DEL PEAK 10(7Q36.1) WILD-TYPE" 
                   TCGA-IB-7645                    TCGA-IB-7646 
"DEL PEAK 10(7Q36.1) WILD-TYPE"   "DEL PEAK 10(7Q36.1) MUTATED" 
                   TCGA-IB-7647                    TCGA-IB-7649 
"DEL PEAK 10(7Q36.1) WILD-TYPE" "DEL PEAK 10(7Q36.1) WILD-TYPE" 
                   TCGA-IB-7651                    TCGA-IB-7652 
"DEL PEAK 10(7Q36.1) WILD-TYPE" "DEL PEAK 10(7Q36.1) WILD-TYPE" 
                   TCGA-IB-7885                    TCGA-IB-7886 
"DEL PEAK 10(7Q36.1) WILD-TYPE" "DEL PEAK 10(7Q36.1) WILD-TYPE" 
                   TCGA-IB-7887                    TCGA-IB-7888 
"DEL PEAK 10(7Q36.1) WILD-TYPE" "DEL PEAK 10(7Q36.1) WILD-TYPE" 
                   TCGA-IB-7889                    TCGA-IB-7890 
"DEL PEAK 10(7Q36.1) WILD-TYPE"   "DEL PEAK 10(7Q36.1) MUTATED" 
                   TCGA-IB-7891                    TCGA-IB-7893 
"DEL PEAK 10(7Q36.1) WILD-TYPE" "DEL PEAK 10(7Q36.1) WILD-TYPE" 
                   TCGA-IB-7897                    TCGA-IB-8126 
"DEL PEAK 10(7Q36.1) WILD-TYPE" "DEL PEAK 10(7Q36.1) WILD-TYPE" 
                   TCGA-IB-8127                    TCGA-IB-A5SO 
"DEL PEAK 10(7Q36.1) WILD-TYPE" "DEL PEAK 10(7Q36.1) WILD-TYPE" 
                   TCGA-IB-A5SP                    TCGA-IB-A5SQ 
"DEL PEAK 10(7Q36.1) WILD-TYPE" "DEL PEAK 10(7Q36.1) WILD-TYPE" 
                   TCGA-IB-A5SS                    TCGA-IB-A5ST 
"DEL PEAK 10(7Q36.1) WILD-TYPE" "DEL PEAK 10(7Q36.1) WILD-TYPE" 
                   TCGA-F2-6879                    TCGA-F2-6880 
"DEL PEAK 10(7Q36.1) WILD-TYPE" "DEL PEAK 10(7Q36.1) WILD-TYPE" 
                   TCGA-F2-7273                    TCGA-F2-7276 
"DEL PEAK 10(7Q36.1) WILD-TYPE" "DEL PEAK 10(7Q36.1) WILD-TYPE" 
                   TCGA-F2-A44G                    TCGA-F2-A44H 
"DEL PEAK 10(7Q36.1) WILD-TYPE" "DEL PEAK 10(7Q36.1) WILD-TYPE" 
                   TCGA-FB-A4P5                    TCGA-FB-A545 
"DEL PEAK 10(7Q36.1) WILD-TYPE" "DEL PEAK 10(7Q36.1) WILD-TYPE" 
                   TCGA-H6-8124                    TCGA-H6-A45N 
  "DEL PEAK 10(7Q36.1) MUTATED" "DEL PEAK 10(7Q36.1) WILD-TYPE" 
                   TCGA-HZ-7289                    TCGA-HZ-7918 
"DEL PEAK 10(7Q36.1) WILD-TYPE" "DEL PEAK 10(7Q36.1) WILD-TYPE" 
                   TCGA-HZ-7919                    TCGA-HZ-7922 
"DEL PEAK 10(7Q36.1) WILD-TYPE"   "DEL PEAK 10(7Q36.1) MUTATED" 
                   TCGA-HZ-7923                    TCGA-HZ-7924 
"DEL PEAK 10(7Q36.1) WILD-TYPE" "DEL PEAK 10(7Q36.1) WILD-TYPE" 
                   TCGA-HZ-7925                    TCGA-HZ-7926 
"DEL PEAK 10(7Q36.1) WILD-TYPE" "DEL PEAK 10(7Q36.1) WILD-TYPE" 
                   TCGA-HZ-8001                    TCGA-HZ-8002 
"DEL PEAK 10(7Q36.1) WILD-TYPE" "DEL PEAK 10(7Q36.1) WILD-TYPE" 
                   TCGA-HZ-8003                    TCGA-HZ-8005 
"DEL PEAK 10(7Q36.1) WILD-TYPE" "DEL PEAK 10(7Q36.1) WILD-TYPE" 
                   TCGA-HZ-8315                    TCGA-HZ-8317 
"DEL PEAK 10(7Q36.1) WILD-TYPE" "DEL PEAK 10(7Q36.1) WILD-TYPE" 
                   TCGA-HZ-8519                    TCGA-HZ-8636 
"DEL PEAK 10(7Q36.1) WILD-TYPE" "DEL PEAK 10(7Q36.1) WILD-TYPE" 
                   TCGA-HZ-8638                    TCGA-HZ-A49G 
"DEL PEAK 10(7Q36.1) WILD-TYPE" "DEL PEAK 10(7Q36.1) WILD-TYPE" 
                   TCGA-HZ-A49H                    TCGA-HZ-A4BH 
"DEL PEAK 10(7Q36.1) WILD-TYPE"   "DEL PEAK 10(7Q36.1) MUTATED" 
                   TCGA-HZ-A4BK                    TCGA-IB-7644 
"DEL PEAK 10(7Q36.1) WILD-TYPE" "DEL PEAK 10(7Q36.1) WILD-TYPE" 
                   TCGA-IB-7645                    TCGA-IB-7646 
"DEL PEAK 10(7Q36.1) WILD-TYPE"   "DEL PEAK 10(7Q36.1) MUTATED" 
                   TCGA-IB-7647                    TCGA-IB-7649 
"DEL PEAK 10(7Q36.1) WILD-TYPE" "DEL PEAK 10(7Q36.1) WILD-TYPE" 
                   TCGA-IB-7651                    TCGA-IB-7652 
"DEL PEAK 10(7Q36.1) WILD-TYPE" "DEL PEAK 10(7Q36.1) WILD-TYPE" 
                   TCGA-IB-7885                    TCGA-IB-7886 
"DEL PEAK 10(7Q36.1) WILD-TYPE" "DEL PEAK 10(7Q36.1) WILD-TYPE" 
                   TCGA-IB-7887                    TCGA-IB-7888 
"DEL PEAK 10(7Q36.1) WILD-TYPE" "DEL PEAK 10(7Q36.1) WILD-TYPE" 
                   TCGA-IB-7889                    TCGA-IB-7890 
"DEL PEAK 10(7Q36.1) WILD-TYPE"   "DEL PEAK 10(7Q36.1) MUTATED" 
                   TCGA-IB-7891                    TCGA-IB-7893 
"DEL PEAK 10(7Q36.1) WILD-TYPE" "DEL PEAK 10(7Q36.1) WILD-TYPE" 
                   TCGA-IB-7897                    TCGA-IB-8126 
"DEL PEAK 10(7Q36.1) WILD-TYPE" "DEL PEAK 10(7Q36.1) WILD-TYPE" 
                   TCGA-IB-8127                    TCGA-IB-A5SO 
"DEL PEAK 10(7Q36.1) WILD-TYPE" "DEL PEAK 10(7Q36.1) WILD-TYPE" 
                   TCGA-IB-A5SP                    TCGA-IB-A5SQ 
"DEL PEAK 10(7Q36.1) WILD-TYPE" "DEL PEAK 10(7Q36.1) WILD-TYPE" 
                   TCGA-IB-A5SS                    TCGA-IB-A5ST 
"DEL PEAK 10(7Q36.1) WILD-TYPE" "DEL PEAK 10(7Q36.1) WILD-TYPE" 
[1] "hr=" "1.3"
D28V2, continuous
                               vv
clus                            STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III
  DEL PEAK 10(7Q36.1) MUTATED          0        1         0         4         0
  DEL PEAK 10(7Q36.1) WILD-TYPE        2        2         7        37         2
                               vv
clus                            STAGE IV
  DEL PEAK 10(7Q36.1) MUTATED          0
  DEL PEAK 10(7Q36.1) WILD-TYPE        2
D28V3, multiclass
                               vv
clus                            T1+T2 T3+T4
  DEL PEAK 10(7Q36.1) MUTATED       1     4
  DEL PEAK 10(7Q36.1) WILD-TYPE     5    47
D28V4, multiclass
       clus
vv      DEL PEAK 10(7Q36.1) MUTATED DEL PEAK 10(7Q36.1) WILD-TYPE
  T1+T2                           1                             5
  T3+T4                           4                            47
D28V5, binary
                               cls
clus                             0  1
  DEL PEAK 10(7Q36.1) MUTATED    1  4
  DEL PEAK 10(7Q36.1) WILD-TYPE 13 39
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 10(7Q36.1) MUTATED      1    4
  DEL PEAK 10(7Q36.1) WILD-TYPE   13   39
   clus
vv  DEL PEAK 10(7Q36.1) MUTATED DEL PEAK 10(7Q36.1) WILD-TYPE
  0                           1                            13
  1                           4                            39
                               vv
clus                            M0 M1 MX
  DEL PEAK 10(7Q36.1) MUTATED    3  0  2
  DEL PEAK 10(7Q36.1) WILD-TYPE 29  2 21
D28V6, multiclass
    clus
vv   DEL PEAK 10(7Q36.1) MUTATED DEL PEAK 10(7Q36.1) WILD-TYPE
  M0                           3                            29
  M1                           0                             2
  MX                           2                            21
D28V7, binary
                               cls
clus                             0  1
  DEL PEAK 10(7Q36.1) MUTATED    2  3
  DEL PEAK 10(7Q36.1) WILD-TYPE 29 23
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 10(7Q36.1) MUTATED      2    3
  DEL PEAK 10(7Q36.1) WILD-TYPE   29   23
        clus
vv       DEL PEAK 10(7Q36.1) MUTATED DEL PEAK 10(7Q36.1) WILD-TYPE
  FEMALE                           2                            29
  MALE                             3                            23
                               vv
clus                            PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  DEL PEAK 10(7Q36.1) MUTATED                                     5
  DEL PEAK 10(7Q36.1) WILD-TYPE                                  46
                               vv
clus                            PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  DEL PEAK 10(7Q36.1) MUTATED                                       0
  DEL PEAK 10(7Q36.1) WILD-TYPE                                     4
                               vv
clus                            PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  DEL PEAK 10(7Q36.1) MUTATED                                                  0
  DEL PEAK 10(7Q36.1) WILD-TYPE                                                1
D28V8, multiclass
                                                  clus
vv                                                 DEL PEAK 10(7Q36.1) MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                        5
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                      0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                           0
                                                  clus
vv                                                 DEL PEAK 10(7Q36.1) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                         46
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                        4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                             1
D28V9, continuous
[1] "Remove cluster labels:"      "DEL PEAK 10(7Q36.1) MUTATED"
clus
  DEL PEAK 10(7Q36.1) MUTATED DEL PEAK 10(7Q36.1) WILD-TYPE 
                            1                            13 
                   TCGA-F2-6880                    TCGA-FB-A4P5 
"DEL PEAK 10(7Q36.1) WILD-TYPE" "DEL PEAK 10(7Q36.1) WILD-TYPE" 
                   TCGA-H6-A45N                    TCGA-IB-7644 
"DEL PEAK 10(7Q36.1) WILD-TYPE" "DEL PEAK 10(7Q36.1) WILD-TYPE" 
                   TCGA-IB-7649                    TCGA-IB-7651 
"DEL PEAK 10(7Q36.1) WILD-TYPE" "DEL PEAK 10(7Q36.1) WILD-TYPE" 
                   TCGA-IB-7885                    TCGA-IB-7886 
"DEL PEAK 10(7Q36.1) WILD-TYPE" "DEL PEAK 10(7Q36.1) WILD-TYPE" 
                   TCGA-IB-7887                    TCGA-IB-7891 
"DEL PEAK 10(7Q36.1) WILD-TYPE" "DEL PEAK 10(7Q36.1) WILD-TYPE" 
                   TCGA-IB-8126                    TCGA-IB-8127 
"DEL PEAK 10(7Q36.1) WILD-TYPE" "DEL PEAK 10(7Q36.1) WILD-TYPE" 
                   TCGA-IB-A5SS 
"DEL PEAK 10(7Q36.1) WILD-TYPE" 
D28V10, continuous
[1] "Remove cluster labels:"      "DEL PEAK 10(7Q36.1) MUTATED"
clus
  DEL PEAK 10(7Q36.1) MUTATED DEL PEAK 10(7Q36.1) WILD-TYPE 
                            1                            10 
                   TCGA-FB-A4P5                    TCGA-IB-7644 
"DEL PEAK 10(7Q36.1) WILD-TYPE" "DEL PEAK 10(7Q36.1) WILD-TYPE" 
                   TCGA-IB-7649                    TCGA-IB-7651 
"DEL PEAK 10(7Q36.1) WILD-TYPE" "DEL PEAK 10(7Q36.1) WILD-TYPE" 
                   TCGA-IB-7885                    TCGA-IB-7886 
"DEL PEAK 10(7Q36.1) WILD-TYPE" "DEL PEAK 10(7Q36.1) WILD-TYPE" 
                   TCGA-IB-7891                    TCGA-IB-8126 
"DEL PEAK 10(7Q36.1) WILD-TYPE" "DEL PEAK 10(7Q36.1) WILD-TYPE" 
                   TCGA-IB-8127                    TCGA-IB-A5SS 
"DEL PEAK 10(7Q36.1) WILD-TYPE" "DEL PEAK 10(7Q36.1) WILD-TYPE" 
                               vv
clus                            R0 R1 RX
  DEL PEAK 10(7Q36.1) MUTATED    3  2  0
  DEL PEAK 10(7Q36.1) WILD-TYPE 29 19  2
D28V11, multiclass
    clus
vv   DEL PEAK 10(7Q36.1) MUTATED DEL PEAK 10(7Q36.1) WILD-TYPE
  R0                           3                            29
  R1                           2                            19
  RX                           0                             2
D28V12, continuous

Clustering(29) Variable = DEL PEAK 11(8P21.3) MUTATION ANALYSIS
D29V1, survival
                               sevent
clus2                            0  1
  DEL PEAK 11(8P21.3) MUTATED    8  7
  DEL PEAK 11(8P21.3) WILD-TYPE 27 12
  DEL PEAK 11(8P21.3) MUTATED DEL PEAK 11(8P21.3) WILD-TYPE 
                           15                            39 
  DEL PEAK 11(8P21.3) MUTATED DEL PEAK 11(8P21.3) WILD-TYPE 
                            7                            12 
$`DEL PEAK 11(8P21.3) MUTATED`
TCGA-F2-6879 TCGA-HZ-7289 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7925 TCGA-HZ-8005 
       10.98         7.86         0.66         0.13        12.03         3.91 
TCGA-HZ-8636 TCGA-HZ-A4BK TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7652 TCGA-IB-7886 
        0.16         1.51         4.77        21.86        15.65         4.04 
TCGA-IB-7887 TCGA-IB-7890 TCGA-IB-8127 
        3.58        19.66        17.13 

$`DEL PEAK 11(8P21.3) WILD-TYPE`
TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A4P5 
        9.96        11.84         7.07         5.03         5.19         0.13 
TCGA-FB-A545 TCGA-H6-8124 TCGA-H6-A45N TCGA-HZ-7918 TCGA-HZ-7923 TCGA-HZ-7924 
        0.03        12.89         7.63         0.92         0.26        12.13 
TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8315 TCGA-HZ-8317 
        0.26         0.62         0.99         0.69         0.92         0.49 
TCGA-HZ-8519 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-IB-7644 
        0.10         2.96         0.76         1.02         5.98        11.41 
TCGA-IB-7645 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7885 TCGA-IB-7888 TCGA-IB-7889 
       49.38        15.35        19.82        27.98        43.79        15.78 
TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-A5SO TCGA-IB-A5SP 
       16.04         3.85        15.95         0.56        10.82         9.83 
TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST 
        7.20        15.12         0.26 

  DEL PEAK 11(8P21.3) MUTATED DEL PEAK 11(8P21.3) WILD-TYPE 
                         0.13                          0.03 
  DEL PEAK 11(8P21.3) MUTATED DEL PEAK 11(8P21.3) WILD-TYPE 
                        21.86                         49.38 
  DEL PEAK 11(8P21.3) MUTATED DEL PEAK 11(8P21.3) WILD-TYPE 
                         4.77                          5.98 
[1] "0.1 - 21.9 (4.8)" "0.0 - 49.4 (6.0)"
                   TCGA-F2-6879                    TCGA-F2-6880 
  "DEL PEAK 11(8P21.3) MUTATED" "DEL PEAK 11(8P21.3) WILD-TYPE" 
                   TCGA-F2-7273                    TCGA-F2-7276 
"DEL PEAK 11(8P21.3) WILD-TYPE" "DEL PEAK 11(8P21.3) WILD-TYPE" 
                   TCGA-F2-A44G                    TCGA-F2-A44H 
"DEL PEAK 11(8P21.3) WILD-TYPE" "DEL PEAK 11(8P21.3) WILD-TYPE" 
                   TCGA-FB-A4P5                    TCGA-FB-A545 
"DEL PEAK 11(8P21.3) WILD-TYPE" "DEL PEAK 11(8P21.3) WILD-TYPE" 
                   TCGA-H6-8124                    TCGA-H6-A45N 
"DEL PEAK 11(8P21.3) WILD-TYPE" "DEL PEAK 11(8P21.3) WILD-TYPE" 
                   TCGA-HZ-7289                    TCGA-HZ-7918 
  "DEL PEAK 11(8P21.3) MUTATED" "DEL PEAK 11(8P21.3) WILD-TYPE" 
                   TCGA-HZ-7919                    TCGA-HZ-7922 
  "DEL PEAK 11(8P21.3) MUTATED"   "DEL PEAK 11(8P21.3) MUTATED" 
                   TCGA-HZ-7923                    TCGA-HZ-7924 
"DEL PEAK 11(8P21.3) WILD-TYPE" "DEL PEAK 11(8P21.3) WILD-TYPE" 
                   TCGA-HZ-7925                    TCGA-HZ-7926 
  "DEL PEAK 11(8P21.3) MUTATED" "DEL PEAK 11(8P21.3) WILD-TYPE" 
                   TCGA-HZ-8001                    TCGA-HZ-8002 
"DEL PEAK 11(8P21.3) WILD-TYPE" "DEL PEAK 11(8P21.3) WILD-TYPE" 
                   TCGA-HZ-8003                    TCGA-HZ-8005 
"DEL PEAK 11(8P21.3) WILD-TYPE"   "DEL PEAK 11(8P21.3) MUTATED" 
                   TCGA-HZ-8315                    TCGA-HZ-8317 
"DEL PEAK 11(8P21.3) WILD-TYPE" "DEL PEAK 11(8P21.3) WILD-TYPE" 
                   TCGA-HZ-8519                    TCGA-HZ-8636 
"DEL PEAK 11(8P21.3) WILD-TYPE"   "DEL PEAK 11(8P21.3) MUTATED" 
                   TCGA-HZ-8638                    TCGA-HZ-A49G 
"DEL PEAK 11(8P21.3) WILD-TYPE" "DEL PEAK 11(8P21.3) WILD-TYPE" 
                   TCGA-HZ-A49H                    TCGA-HZ-A4BH 
"DEL PEAK 11(8P21.3) WILD-TYPE" "DEL PEAK 11(8P21.3) WILD-TYPE" 
                   TCGA-HZ-A4BK                    TCGA-IB-7644 
  "DEL PEAK 11(8P21.3) MUTATED" "DEL PEAK 11(8P21.3) WILD-TYPE" 
                   TCGA-IB-7645                    TCGA-IB-7646 
"DEL PEAK 11(8P21.3) WILD-TYPE"   "DEL PEAK 11(8P21.3) MUTATED" 
                   TCGA-IB-7647                    TCGA-IB-7649 
  "DEL PEAK 11(8P21.3) MUTATED" "DEL PEAK 11(8P21.3) WILD-TYPE" 
                   TCGA-IB-7651                    TCGA-IB-7652 
"DEL PEAK 11(8P21.3) WILD-TYPE"   "DEL PEAK 11(8P21.3) MUTATED" 
                   TCGA-IB-7885                    TCGA-IB-7886 
"DEL PEAK 11(8P21.3) WILD-TYPE"   "DEL PEAK 11(8P21.3) MUTATED" 
                   TCGA-IB-7887                    TCGA-IB-7888 
  "DEL PEAK 11(8P21.3) MUTATED" "DEL PEAK 11(8P21.3) WILD-TYPE" 
                   TCGA-IB-7889                    TCGA-IB-7890 
"DEL PEAK 11(8P21.3) WILD-TYPE"   "DEL PEAK 11(8P21.3) MUTATED" 
                   TCGA-IB-7891                    TCGA-IB-7893 
"DEL PEAK 11(8P21.3) WILD-TYPE" "DEL PEAK 11(8P21.3) WILD-TYPE" 
                   TCGA-IB-7897                    TCGA-IB-8126 
"DEL PEAK 11(8P21.3) WILD-TYPE" "DEL PEAK 11(8P21.3) WILD-TYPE" 
                   TCGA-IB-8127                    TCGA-IB-A5SO 
  "DEL PEAK 11(8P21.3) MUTATED" "DEL PEAK 11(8P21.3) WILD-TYPE" 
                   TCGA-IB-A5SP                    TCGA-IB-A5SQ 
"DEL PEAK 11(8P21.3) WILD-TYPE" "DEL PEAK 11(8P21.3) WILD-TYPE" 
                   TCGA-IB-A5SS                    TCGA-IB-A5ST 
"DEL PEAK 11(8P21.3) WILD-TYPE" "DEL PEAK 11(8P21.3) WILD-TYPE" 
                   TCGA-F2-6879                    TCGA-F2-6880 
  "DEL PEAK 11(8P21.3) MUTATED" "DEL PEAK 11(8P21.3) WILD-TYPE" 
                   TCGA-F2-7273                    TCGA-F2-7276 
"DEL PEAK 11(8P21.3) WILD-TYPE" "DEL PEAK 11(8P21.3) WILD-TYPE" 
                   TCGA-F2-A44G                    TCGA-F2-A44H 
"DEL PEAK 11(8P21.3) WILD-TYPE" "DEL PEAK 11(8P21.3) WILD-TYPE" 
                   TCGA-FB-A4P5                    TCGA-FB-A545 
"DEL PEAK 11(8P21.3) WILD-TYPE" "DEL PEAK 11(8P21.3) WILD-TYPE" 
                   TCGA-H6-8124                    TCGA-H6-A45N 
"DEL PEAK 11(8P21.3) WILD-TYPE" "DEL PEAK 11(8P21.3) WILD-TYPE" 
                   TCGA-HZ-7289                    TCGA-HZ-7918 
  "DEL PEAK 11(8P21.3) MUTATED" "DEL PEAK 11(8P21.3) WILD-TYPE" 
                   TCGA-HZ-7919                    TCGA-HZ-7922 
  "DEL PEAK 11(8P21.3) MUTATED"   "DEL PEAK 11(8P21.3) MUTATED" 
                   TCGA-HZ-7923                    TCGA-HZ-7924 
"DEL PEAK 11(8P21.3) WILD-TYPE" "DEL PEAK 11(8P21.3) WILD-TYPE" 
                   TCGA-HZ-7925                    TCGA-HZ-7926 
  "DEL PEAK 11(8P21.3) MUTATED" "DEL PEAK 11(8P21.3) WILD-TYPE" 
                   TCGA-HZ-8001                    TCGA-HZ-8002 
"DEL PEAK 11(8P21.3) WILD-TYPE" "DEL PEAK 11(8P21.3) WILD-TYPE" 
                   TCGA-HZ-8003                    TCGA-HZ-8005 
"DEL PEAK 11(8P21.3) WILD-TYPE"   "DEL PEAK 11(8P21.3) MUTATED" 
                   TCGA-HZ-8315                    TCGA-HZ-8317 
"DEL PEAK 11(8P21.3) WILD-TYPE" "DEL PEAK 11(8P21.3) WILD-TYPE" 
                   TCGA-HZ-8519                    TCGA-HZ-8636 
"DEL PEAK 11(8P21.3) WILD-TYPE"   "DEL PEAK 11(8P21.3) MUTATED" 
                   TCGA-HZ-8638                    TCGA-HZ-A49G 
"DEL PEAK 11(8P21.3) WILD-TYPE" "DEL PEAK 11(8P21.3) WILD-TYPE" 
                   TCGA-HZ-A49H                    TCGA-HZ-A4BH 
"DEL PEAK 11(8P21.3) WILD-TYPE" "DEL PEAK 11(8P21.3) WILD-TYPE" 
                   TCGA-HZ-A4BK                    TCGA-IB-7644 
  "DEL PEAK 11(8P21.3) MUTATED" "DEL PEAK 11(8P21.3) WILD-TYPE" 
                   TCGA-IB-7645                    TCGA-IB-7646 
"DEL PEAK 11(8P21.3) WILD-TYPE"   "DEL PEAK 11(8P21.3) MUTATED" 
                   TCGA-IB-7647                    TCGA-IB-7649 
  "DEL PEAK 11(8P21.3) MUTATED" "DEL PEAK 11(8P21.3) WILD-TYPE" 
                   TCGA-IB-7651                    TCGA-IB-7652 
"DEL PEAK 11(8P21.3) WILD-TYPE"   "DEL PEAK 11(8P21.3) MUTATED" 
                   TCGA-IB-7885                    TCGA-IB-7886 
"DEL PEAK 11(8P21.3) WILD-TYPE"   "DEL PEAK 11(8P21.3) MUTATED" 
                   TCGA-IB-7887                    TCGA-IB-7888 
  "DEL PEAK 11(8P21.3) MUTATED" "DEL PEAK 11(8P21.3) WILD-TYPE" 
                   TCGA-IB-7889                    TCGA-IB-7890 
"DEL PEAK 11(8P21.3) WILD-TYPE"   "DEL PEAK 11(8P21.3) MUTATED" 
                   TCGA-IB-7891                    TCGA-IB-7893 
"DEL PEAK 11(8P21.3) WILD-TYPE" "DEL PEAK 11(8P21.3) WILD-TYPE" 
                   TCGA-IB-7897                    TCGA-IB-8126 
"DEL PEAK 11(8P21.3) WILD-TYPE" "DEL PEAK 11(8P21.3) WILD-TYPE" 
                   TCGA-IB-8127                    TCGA-IB-A5SO 
  "DEL PEAK 11(8P21.3) MUTATED" "DEL PEAK 11(8P21.3) WILD-TYPE" 
                   TCGA-IB-A5SP                    TCGA-IB-A5SQ 
"DEL PEAK 11(8P21.3) WILD-TYPE" "DEL PEAK 11(8P21.3) WILD-TYPE" 
                   TCGA-IB-A5SS                    TCGA-IB-A5ST 
"DEL PEAK 11(8P21.3) WILD-TYPE" "DEL PEAK 11(8P21.3) WILD-TYPE" 
                   TCGA-F2-6879                    TCGA-F2-6880 
  "DEL PEAK 11(8P21.3) MUTATED" "DEL PEAK 11(8P21.3) WILD-TYPE" 
                   TCGA-F2-7273                    TCGA-F2-7276 
"DEL PEAK 11(8P21.3) WILD-TYPE" "DEL PEAK 11(8P21.3) WILD-TYPE" 
                   TCGA-F2-A44G                    TCGA-F2-A44H 
"DEL PEAK 11(8P21.3) WILD-TYPE" "DEL PEAK 11(8P21.3) WILD-TYPE" 
                   TCGA-FB-A4P5                    TCGA-FB-A545 
"DEL PEAK 11(8P21.3) WILD-TYPE" "DEL PEAK 11(8P21.3) WILD-TYPE" 
                   TCGA-H6-8124                    TCGA-H6-A45N 
"DEL PEAK 11(8P21.3) WILD-TYPE" "DEL PEAK 11(8P21.3) WILD-TYPE" 
                   TCGA-HZ-7289                    TCGA-HZ-7918 
  "DEL PEAK 11(8P21.3) MUTATED" "DEL PEAK 11(8P21.3) WILD-TYPE" 
                   TCGA-HZ-7919                    TCGA-HZ-7922 
  "DEL PEAK 11(8P21.3) MUTATED"   "DEL PEAK 11(8P21.3) MUTATED" 
                   TCGA-HZ-7923                    TCGA-HZ-7924 
"DEL PEAK 11(8P21.3) WILD-TYPE" "DEL PEAK 11(8P21.3) WILD-TYPE" 
                   TCGA-HZ-7925                    TCGA-HZ-7926 
  "DEL PEAK 11(8P21.3) MUTATED" "DEL PEAK 11(8P21.3) WILD-TYPE" 
                   TCGA-HZ-8001                    TCGA-HZ-8002 
"DEL PEAK 11(8P21.3) WILD-TYPE" "DEL PEAK 11(8P21.3) WILD-TYPE" 
                   TCGA-HZ-8003                    TCGA-HZ-8005 
"DEL PEAK 11(8P21.3) WILD-TYPE"   "DEL PEAK 11(8P21.3) MUTATED" 
                   TCGA-HZ-8315                    TCGA-HZ-8317 
"DEL PEAK 11(8P21.3) WILD-TYPE" "DEL PEAK 11(8P21.3) WILD-TYPE" 
                   TCGA-HZ-8519                    TCGA-HZ-8636 
"DEL PEAK 11(8P21.3) WILD-TYPE"   "DEL PEAK 11(8P21.3) MUTATED" 
                   TCGA-HZ-8638                    TCGA-HZ-A49G 
"DEL PEAK 11(8P21.3) WILD-TYPE" "DEL PEAK 11(8P21.3) WILD-TYPE" 
                   TCGA-HZ-A49H                    TCGA-HZ-A4BH 
"DEL PEAK 11(8P21.3) WILD-TYPE" "DEL PEAK 11(8P21.3) WILD-TYPE" 
                   TCGA-HZ-A4BK                    TCGA-IB-7644 
  "DEL PEAK 11(8P21.3) MUTATED" "DEL PEAK 11(8P21.3) WILD-TYPE" 
                   TCGA-IB-7645                    TCGA-IB-7646 
"DEL PEAK 11(8P21.3) WILD-TYPE"   "DEL PEAK 11(8P21.3) MUTATED" 
                   TCGA-IB-7647                    TCGA-IB-7649 
  "DEL PEAK 11(8P21.3) MUTATED" "DEL PEAK 11(8P21.3) WILD-TYPE" 
                   TCGA-IB-7651                    TCGA-IB-7652 
"DEL PEAK 11(8P21.3) WILD-TYPE"   "DEL PEAK 11(8P21.3) MUTATED" 
                   TCGA-IB-7885                    TCGA-IB-7886 
"DEL PEAK 11(8P21.3) WILD-TYPE"   "DEL PEAK 11(8P21.3) MUTATED" 
                   TCGA-IB-7887                    TCGA-IB-7888 
  "DEL PEAK 11(8P21.3) MUTATED" "DEL PEAK 11(8P21.3) WILD-TYPE" 
                   TCGA-IB-7889                    TCGA-IB-7890 
"DEL PEAK 11(8P21.3) WILD-TYPE"   "DEL PEAK 11(8P21.3) MUTATED" 
                   TCGA-IB-7891                    TCGA-IB-7893 
"DEL PEAK 11(8P21.3) WILD-TYPE" "DEL PEAK 11(8P21.3) WILD-TYPE" 
                   TCGA-IB-7897                    TCGA-IB-8126 
"DEL PEAK 11(8P21.3) WILD-TYPE" "DEL PEAK 11(8P21.3) WILD-TYPE" 
                   TCGA-IB-8127                    TCGA-IB-A5SO 
  "DEL PEAK 11(8P21.3) MUTATED" "DEL PEAK 11(8P21.3) WILD-TYPE" 
                   TCGA-IB-A5SP                    TCGA-IB-A5SQ 
"DEL PEAK 11(8P21.3) WILD-TYPE" "DEL PEAK 11(8P21.3) WILD-TYPE" 
                   TCGA-IB-A5SS                    TCGA-IB-A5ST 
"DEL PEAK 11(8P21.3) WILD-TYPE" "DEL PEAK 11(8P21.3) WILD-TYPE" 
[1] "hr=" "1.7"
D29V2, continuous
                               vv
clus                            STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III
  DEL PEAK 11(8P21.3) MUTATED          0        1         0        13         0
  DEL PEAK 11(8P21.3) WILD-TYPE        2        2         7        28         2
                               vv
clus                            STAGE IV
  DEL PEAK 11(8P21.3) MUTATED          1
  DEL PEAK 11(8P21.3) WILD-TYPE        1
D29V3, multiclass
                               vv
clus                            T1+T2 T3+T4
  DEL PEAK 11(8P21.3) MUTATED       1    14
  DEL PEAK 11(8P21.3) WILD-TYPE     5    37
D29V4, multiclass
       clus
vv      DEL PEAK 11(8P21.3) MUTATED DEL PEAK 11(8P21.3) WILD-TYPE
  T1+T2                           1                             5
  T3+T4                          14                            37
D29V5, binary
                               cls
clus                             0  1
  DEL PEAK 11(8P21.3) MUTATED    2 13
  DEL PEAK 11(8P21.3) WILD-TYPE 12 30
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 11(8P21.3) MUTATED      2   13
  DEL PEAK 11(8P21.3) WILD-TYPE   12   30
   clus
vv  DEL PEAK 11(8P21.3) MUTATED DEL PEAK 11(8P21.3) WILD-TYPE
  0                           2                            12
  1                          13                            30
                               vv
clus                            M0 M1 MX
  DEL PEAK 11(8P21.3) MUTATED    9  1  5
  DEL PEAK 11(8P21.3) WILD-TYPE 23  1 18
D29V6, multiclass
    clus
vv   DEL PEAK 11(8P21.3) MUTATED DEL PEAK 11(8P21.3) WILD-TYPE
  M0                           9                            23
  M1                           1                             1
  MX                           5                            18
D29V7, binary
                               cls
clus                             0  1
  DEL PEAK 11(8P21.3) MUTATED    6  9
  DEL PEAK 11(8P21.3) WILD-TYPE 25 17
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 11(8P21.3) MUTATED      6    9
  DEL PEAK 11(8P21.3) WILD-TYPE   25   17
        clus
vv       DEL PEAK 11(8P21.3) MUTATED DEL PEAK 11(8P21.3) WILD-TYPE
  FEMALE                           6                            25
  MALE                             9                            17
                               vv
clus                            PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  DEL PEAK 11(8P21.3) MUTATED                                    12
  DEL PEAK 11(8P21.3) WILD-TYPE                                  39
                               vv
clus                            PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  DEL PEAK 11(8P21.3) MUTATED                                       2
  DEL PEAK 11(8P21.3) WILD-TYPE                                     2
                               vv
clus                            PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  DEL PEAK 11(8P21.3) MUTATED                                                  0
  DEL PEAK 11(8P21.3) WILD-TYPE                                                1
D29V8, multiclass
                                                  clus
vv                                                 DEL PEAK 11(8P21.3) MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                       12
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                      2
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                           0
                                                  clus
vv                                                 DEL PEAK 11(8P21.3) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                         39
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                        2
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                             1
D29V9, continuous
D29V10, continuous
[1] "Remove cluster labels:"      "DEL PEAK 11(8P21.3) MUTATED"
clus
  DEL PEAK 11(8P21.3) MUTATED DEL PEAK 11(8P21.3) WILD-TYPE 
                            2                             9 
                   TCGA-FB-A4P5                    TCGA-H6-8124 
"DEL PEAK 11(8P21.3) WILD-TYPE" "DEL PEAK 11(8P21.3) WILD-TYPE" 
                   TCGA-IB-7644                    TCGA-IB-7649 
"DEL PEAK 11(8P21.3) WILD-TYPE" "DEL PEAK 11(8P21.3) WILD-TYPE" 
                   TCGA-IB-7651                    TCGA-IB-7885 
"DEL PEAK 11(8P21.3) WILD-TYPE" "DEL PEAK 11(8P21.3) WILD-TYPE" 
                   TCGA-IB-7891                    TCGA-IB-8126 
"DEL PEAK 11(8P21.3) WILD-TYPE" "DEL PEAK 11(8P21.3) WILD-TYPE" 
                   TCGA-IB-A5SS 
"DEL PEAK 11(8P21.3) WILD-TYPE" 
                               vv
clus                            R0 R1 RX
  DEL PEAK 11(8P21.3) MUTATED    4 10  1
  DEL PEAK 11(8P21.3) WILD-TYPE 28 11  1
D29V11, multiclass
    clus
vv   DEL PEAK 11(8P21.3) MUTATED DEL PEAK 11(8P21.3) WILD-TYPE
  R0                           4                            28
  R1                          10                            11
  RX                           1                             1
D29V12, continuous

Clustering(30) Variable = DEL PEAK 12(8Q12.1) MUTATION ANALYSIS
D30V1, survival
                               sevent
clus2                            0  1
  DEL PEAK 12(8Q12.1) MUTATED    3  1
  DEL PEAK 12(8Q12.1) WILD-TYPE 32 18
  DEL PEAK 12(8Q12.1) MUTATED DEL PEAK 12(8Q12.1) WILD-TYPE 
                            4                            50 
  DEL PEAK 12(8Q12.1) MUTATED DEL PEAK 12(8Q12.1) WILD-TYPE 
                            1                            18 
$`DEL PEAK 12(8Q12.1) MUTATED`
TCGA-HZ-7925 TCGA-HZ-8636 TCGA-HZ-A4BK TCGA-IB-7647 
       12.03         0.16         1.51        21.86 

$`DEL PEAK 12(8Q12.1) WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.96        11.84         7.07         5.03         5.19 
TCGA-FB-A4P5 TCGA-FB-A545 TCGA-H6-8124 TCGA-H6-A45N TCGA-HZ-7289 TCGA-HZ-7918 
        0.13         0.03        12.89         7.63         7.86         0.92 
TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7926 TCGA-HZ-8001 
        0.66         0.13         0.26        12.13         0.26         0.62 
TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8519 
        0.99         0.69         3.91         0.92         0.49         0.10 
TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-IB-7644 TCGA-IB-7645 
        2.96         0.76         1.02         5.98        11.41        49.38 
TCGA-IB-7646 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 
        4.77        15.35        19.82        15.65        27.98         4.04 
TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 
        3.58        43.79        15.78        19.66        16.04         3.85 
TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ 
       15.95         0.56        17.13        10.82         9.83         7.20 
TCGA-IB-A5SS TCGA-IB-A5ST 
       15.12         0.26 

  DEL PEAK 12(8Q12.1) MUTATED DEL PEAK 12(8Q12.1) WILD-TYPE 
                         0.16                          0.03 
  DEL PEAK 12(8Q12.1) MUTATED DEL PEAK 12(8Q12.1) WILD-TYPE 
                        21.86                         49.38 
  DEL PEAK 12(8Q12.1) MUTATED DEL PEAK 12(8Q12.1) WILD-TYPE 
                        6.770                         5.585 
[1] "0.2 - 21.9 (6.8)" "0.0 - 49.4 (5.6)"
                   TCGA-F2-6879                    TCGA-F2-6880 
"DEL PEAK 12(8Q12.1) WILD-TYPE" "DEL PEAK 12(8Q12.1) WILD-TYPE" 
                   TCGA-F2-7273                    TCGA-F2-7276 
"DEL PEAK 12(8Q12.1) WILD-TYPE" "DEL PEAK 12(8Q12.1) WILD-TYPE" 
                   TCGA-F2-A44G                    TCGA-F2-A44H 
"DEL PEAK 12(8Q12.1) WILD-TYPE" "DEL PEAK 12(8Q12.1) WILD-TYPE" 
                   TCGA-FB-A4P5                    TCGA-FB-A545 
"DEL PEAK 12(8Q12.1) WILD-TYPE" "DEL PEAK 12(8Q12.1) WILD-TYPE" 
                   TCGA-H6-8124                    TCGA-H6-A45N 
"DEL PEAK 12(8Q12.1) WILD-TYPE" "DEL PEAK 12(8Q12.1) WILD-TYPE" 
                   TCGA-HZ-7289                    TCGA-HZ-7918 
"DEL PEAK 12(8Q12.1) WILD-TYPE" "DEL PEAK 12(8Q12.1) WILD-TYPE" 
                   TCGA-HZ-7919                    TCGA-HZ-7922 
"DEL PEAK 12(8Q12.1) WILD-TYPE" "DEL PEAK 12(8Q12.1) WILD-TYPE" 
                   TCGA-HZ-7923                    TCGA-HZ-7924 
"DEL PEAK 12(8Q12.1) WILD-TYPE" "DEL PEAK 12(8Q12.1) WILD-TYPE" 
                   TCGA-HZ-7925                    TCGA-HZ-7926 
  "DEL PEAK 12(8Q12.1) MUTATED" "DEL PEAK 12(8Q12.1) WILD-TYPE" 
                   TCGA-HZ-8001                    TCGA-HZ-8002 
"DEL PEAK 12(8Q12.1) WILD-TYPE" "DEL PEAK 12(8Q12.1) WILD-TYPE" 
                   TCGA-HZ-8003                    TCGA-HZ-8005 
"DEL PEAK 12(8Q12.1) WILD-TYPE" "DEL PEAK 12(8Q12.1) WILD-TYPE" 
                   TCGA-HZ-8315                    TCGA-HZ-8317 
"DEL PEAK 12(8Q12.1) WILD-TYPE" "DEL PEAK 12(8Q12.1) WILD-TYPE" 
                   TCGA-HZ-8519                    TCGA-HZ-8636 
"DEL PEAK 12(8Q12.1) WILD-TYPE"   "DEL PEAK 12(8Q12.1) MUTATED" 
                   TCGA-HZ-8638                    TCGA-HZ-A49G 
"DEL PEAK 12(8Q12.1) WILD-TYPE" "DEL PEAK 12(8Q12.1) WILD-TYPE" 
                   TCGA-HZ-A49H                    TCGA-HZ-A4BH 
"DEL PEAK 12(8Q12.1) WILD-TYPE" "DEL PEAK 12(8Q12.1) WILD-TYPE" 
                   TCGA-HZ-A4BK                    TCGA-IB-7644 
  "DEL PEAK 12(8Q12.1) MUTATED" "DEL PEAK 12(8Q12.1) WILD-TYPE" 
                   TCGA-IB-7645                    TCGA-IB-7646 
"DEL PEAK 12(8Q12.1) WILD-TYPE" "DEL PEAK 12(8Q12.1) WILD-TYPE" 
                   TCGA-IB-7647                    TCGA-IB-7649 
  "DEL PEAK 12(8Q12.1) MUTATED" "DEL PEAK 12(8Q12.1) WILD-TYPE" 
                   TCGA-IB-7651                    TCGA-IB-7652 
"DEL PEAK 12(8Q12.1) WILD-TYPE" "DEL PEAK 12(8Q12.1) WILD-TYPE" 
                   TCGA-IB-7885                    TCGA-IB-7886 
"DEL PEAK 12(8Q12.1) WILD-TYPE" "DEL PEAK 12(8Q12.1) WILD-TYPE" 
                   TCGA-IB-7887                    TCGA-IB-7888 
"DEL PEAK 12(8Q12.1) WILD-TYPE" "DEL PEAK 12(8Q12.1) WILD-TYPE" 
                   TCGA-IB-7889                    TCGA-IB-7890 
"DEL PEAK 12(8Q12.1) WILD-TYPE" "DEL PEAK 12(8Q12.1) WILD-TYPE" 
                   TCGA-IB-7891                    TCGA-IB-7893 
"DEL PEAK 12(8Q12.1) WILD-TYPE" "DEL PEAK 12(8Q12.1) WILD-TYPE" 
                   TCGA-IB-7897                    TCGA-IB-8126 
"DEL PEAK 12(8Q12.1) WILD-TYPE" "DEL PEAK 12(8Q12.1) WILD-TYPE" 
                   TCGA-IB-8127                    TCGA-IB-A5SO 
"DEL PEAK 12(8Q12.1) WILD-TYPE" "DEL PEAK 12(8Q12.1) WILD-TYPE" 
                   TCGA-IB-A5SP                    TCGA-IB-A5SQ 
"DEL PEAK 12(8Q12.1) WILD-TYPE" "DEL PEAK 12(8Q12.1) WILD-TYPE" 
                   TCGA-IB-A5SS                    TCGA-IB-A5ST 
"DEL PEAK 12(8Q12.1) WILD-TYPE" "DEL PEAK 12(8Q12.1) WILD-TYPE" 
                   TCGA-F2-6879                    TCGA-F2-6880 
"DEL PEAK 12(8Q12.1) WILD-TYPE" "DEL PEAK 12(8Q12.1) WILD-TYPE" 
                   TCGA-F2-7273                    TCGA-F2-7276 
"DEL PEAK 12(8Q12.1) WILD-TYPE" "DEL PEAK 12(8Q12.1) WILD-TYPE" 
                   TCGA-F2-A44G                    TCGA-F2-A44H 
"DEL PEAK 12(8Q12.1) WILD-TYPE" "DEL PEAK 12(8Q12.1) WILD-TYPE" 
                   TCGA-FB-A4P5                    TCGA-FB-A545 
"DEL PEAK 12(8Q12.1) WILD-TYPE" "DEL PEAK 12(8Q12.1) WILD-TYPE" 
                   TCGA-H6-8124                    TCGA-H6-A45N 
"DEL PEAK 12(8Q12.1) WILD-TYPE" "DEL PEAK 12(8Q12.1) WILD-TYPE" 
                   TCGA-HZ-7289                    TCGA-HZ-7918 
"DEL PEAK 12(8Q12.1) WILD-TYPE" "DEL PEAK 12(8Q12.1) WILD-TYPE" 
                   TCGA-HZ-7919                    TCGA-HZ-7922 
"DEL PEAK 12(8Q12.1) WILD-TYPE" "DEL PEAK 12(8Q12.1) WILD-TYPE" 
                   TCGA-HZ-7923                    TCGA-HZ-7924 
"DEL PEAK 12(8Q12.1) WILD-TYPE" "DEL PEAK 12(8Q12.1) WILD-TYPE" 
                   TCGA-HZ-7925                    TCGA-HZ-7926 
  "DEL PEAK 12(8Q12.1) MUTATED" "DEL PEAK 12(8Q12.1) WILD-TYPE" 
                   TCGA-HZ-8001                    TCGA-HZ-8002 
"DEL PEAK 12(8Q12.1) WILD-TYPE" "DEL PEAK 12(8Q12.1) WILD-TYPE" 
                   TCGA-HZ-8003                    TCGA-HZ-8005 
"DEL PEAK 12(8Q12.1) WILD-TYPE" "DEL PEAK 12(8Q12.1) WILD-TYPE" 
                   TCGA-HZ-8315                    TCGA-HZ-8317 
"DEL PEAK 12(8Q12.1) WILD-TYPE" "DEL PEAK 12(8Q12.1) WILD-TYPE" 
                   TCGA-HZ-8519                    TCGA-HZ-8636 
"DEL PEAK 12(8Q12.1) WILD-TYPE"   "DEL PEAK 12(8Q12.1) MUTATED" 
                   TCGA-HZ-8638                    TCGA-HZ-A49G 
"DEL PEAK 12(8Q12.1) WILD-TYPE" "DEL PEAK 12(8Q12.1) WILD-TYPE" 
                   TCGA-HZ-A49H                    TCGA-HZ-A4BH 
"DEL PEAK 12(8Q12.1) WILD-TYPE" "DEL PEAK 12(8Q12.1) WILD-TYPE" 
                   TCGA-HZ-A4BK                    TCGA-IB-7644 
  "DEL PEAK 12(8Q12.1) MUTATED" "DEL PEAK 12(8Q12.1) WILD-TYPE" 
                   TCGA-IB-7645                    TCGA-IB-7646 
"DEL PEAK 12(8Q12.1) WILD-TYPE" "DEL PEAK 12(8Q12.1) WILD-TYPE" 
                   TCGA-IB-7647                    TCGA-IB-7649 
  "DEL PEAK 12(8Q12.1) MUTATED" "DEL PEAK 12(8Q12.1) WILD-TYPE" 
                   TCGA-IB-7651                    TCGA-IB-7652 
"DEL PEAK 12(8Q12.1) WILD-TYPE" "DEL PEAK 12(8Q12.1) WILD-TYPE" 
                   TCGA-IB-7885                    TCGA-IB-7886 
"DEL PEAK 12(8Q12.1) WILD-TYPE" "DEL PEAK 12(8Q12.1) WILD-TYPE" 
                   TCGA-IB-7887                    TCGA-IB-7888 
"DEL PEAK 12(8Q12.1) WILD-TYPE" "DEL PEAK 12(8Q12.1) WILD-TYPE" 
                   TCGA-IB-7889                    TCGA-IB-7890 
"DEL PEAK 12(8Q12.1) WILD-TYPE" "DEL PEAK 12(8Q12.1) WILD-TYPE" 
                   TCGA-IB-7891                    TCGA-IB-7893 
"DEL PEAK 12(8Q12.1) WILD-TYPE" "DEL PEAK 12(8Q12.1) WILD-TYPE" 
                   TCGA-IB-7897                    TCGA-IB-8126 
"DEL PEAK 12(8Q12.1) WILD-TYPE" "DEL PEAK 12(8Q12.1) WILD-TYPE" 
                   TCGA-IB-8127                    TCGA-IB-A5SO 
"DEL PEAK 12(8Q12.1) WILD-TYPE" "DEL PEAK 12(8Q12.1) WILD-TYPE" 
                   TCGA-IB-A5SP                    TCGA-IB-A5SQ 
"DEL PEAK 12(8Q12.1) WILD-TYPE" "DEL PEAK 12(8Q12.1) WILD-TYPE" 
                   TCGA-IB-A5SS                    TCGA-IB-A5ST 
"DEL PEAK 12(8Q12.1) WILD-TYPE" "DEL PEAK 12(8Q12.1) WILD-TYPE" 
                   TCGA-F2-6879                    TCGA-F2-6880 
"DEL PEAK 12(8Q12.1) WILD-TYPE" "DEL PEAK 12(8Q12.1) WILD-TYPE" 
                   TCGA-F2-7273                    TCGA-F2-7276 
"DEL PEAK 12(8Q12.1) WILD-TYPE" "DEL PEAK 12(8Q12.1) WILD-TYPE" 
                   TCGA-F2-A44G                    TCGA-F2-A44H 
"DEL PEAK 12(8Q12.1) WILD-TYPE" "DEL PEAK 12(8Q12.1) WILD-TYPE" 
                   TCGA-FB-A4P5                    TCGA-FB-A545 
"DEL PEAK 12(8Q12.1) WILD-TYPE" "DEL PEAK 12(8Q12.1) WILD-TYPE" 
                   TCGA-H6-8124                    TCGA-H6-A45N 
"DEL PEAK 12(8Q12.1) WILD-TYPE" "DEL PEAK 12(8Q12.1) WILD-TYPE" 
                   TCGA-HZ-7289                    TCGA-HZ-7918 
"DEL PEAK 12(8Q12.1) WILD-TYPE" "DEL PEAK 12(8Q12.1) WILD-TYPE" 
                   TCGA-HZ-7919                    TCGA-HZ-7922 
"DEL PEAK 12(8Q12.1) WILD-TYPE" "DEL PEAK 12(8Q12.1) WILD-TYPE" 
                   TCGA-HZ-7923                    TCGA-HZ-7924 
"DEL PEAK 12(8Q12.1) WILD-TYPE" "DEL PEAK 12(8Q12.1) WILD-TYPE" 
                   TCGA-HZ-7925                    TCGA-HZ-7926 
  "DEL PEAK 12(8Q12.1) MUTATED" "DEL PEAK 12(8Q12.1) WILD-TYPE" 
                   TCGA-HZ-8001                    TCGA-HZ-8002 
"DEL PEAK 12(8Q12.1) WILD-TYPE" "DEL PEAK 12(8Q12.1) WILD-TYPE" 
                   TCGA-HZ-8003                    TCGA-HZ-8005 
"DEL PEAK 12(8Q12.1) WILD-TYPE" "DEL PEAK 12(8Q12.1) WILD-TYPE" 
                   TCGA-HZ-8315                    TCGA-HZ-8317 
"DEL PEAK 12(8Q12.1) WILD-TYPE" "DEL PEAK 12(8Q12.1) WILD-TYPE" 
                   TCGA-HZ-8519                    TCGA-HZ-8636 
"DEL PEAK 12(8Q12.1) WILD-TYPE"   "DEL PEAK 12(8Q12.1) MUTATED" 
                   TCGA-HZ-8638                    TCGA-HZ-A49G 
"DEL PEAK 12(8Q12.1) WILD-TYPE" "DEL PEAK 12(8Q12.1) WILD-TYPE" 
                   TCGA-HZ-A49H                    TCGA-HZ-A4BH 
"DEL PEAK 12(8Q12.1) WILD-TYPE" "DEL PEAK 12(8Q12.1) WILD-TYPE" 
                   TCGA-HZ-A4BK                    TCGA-IB-7644 
  "DEL PEAK 12(8Q12.1) MUTATED" "DEL PEAK 12(8Q12.1) WILD-TYPE" 
                   TCGA-IB-7645                    TCGA-IB-7646 
"DEL PEAK 12(8Q12.1) WILD-TYPE" "DEL PEAK 12(8Q12.1) WILD-TYPE" 
                   TCGA-IB-7647                    TCGA-IB-7649 
  "DEL PEAK 12(8Q12.1) MUTATED" "DEL PEAK 12(8Q12.1) WILD-TYPE" 
                   TCGA-IB-7651                    TCGA-IB-7652 
"DEL PEAK 12(8Q12.1) WILD-TYPE" "DEL PEAK 12(8Q12.1) WILD-TYPE" 
                   TCGA-IB-7885                    TCGA-IB-7886 
"DEL PEAK 12(8Q12.1) WILD-TYPE" "DEL PEAK 12(8Q12.1) WILD-TYPE" 
                   TCGA-IB-7887                    TCGA-IB-7888 
"DEL PEAK 12(8Q12.1) WILD-TYPE" "DEL PEAK 12(8Q12.1) WILD-TYPE" 
                   TCGA-IB-7889                    TCGA-IB-7890 
"DEL PEAK 12(8Q12.1) WILD-TYPE" "DEL PEAK 12(8Q12.1) WILD-TYPE" 
                   TCGA-IB-7891                    TCGA-IB-7893 
"DEL PEAK 12(8Q12.1) WILD-TYPE" "DEL PEAK 12(8Q12.1) WILD-TYPE" 
                   TCGA-IB-7897                    TCGA-IB-8126 
"DEL PEAK 12(8Q12.1) WILD-TYPE" "DEL PEAK 12(8Q12.1) WILD-TYPE" 
                   TCGA-IB-8127                    TCGA-IB-A5SO 
"DEL PEAK 12(8Q12.1) WILD-TYPE" "DEL PEAK 12(8Q12.1) WILD-TYPE" 
                   TCGA-IB-A5SP                    TCGA-IB-A5SQ 
"DEL PEAK 12(8Q12.1) WILD-TYPE" "DEL PEAK 12(8Q12.1) WILD-TYPE" 
                   TCGA-IB-A5SS                    TCGA-IB-A5ST 
"DEL PEAK 12(8Q12.1) WILD-TYPE" "DEL PEAK 12(8Q12.1) WILD-TYPE" 
[1] "hr=" "1.9"
D30V2, continuous
                               vv
clus                            STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III
  DEL PEAK 12(8Q12.1) MUTATED          0        0         0         3         0
  DEL PEAK 12(8Q12.1) WILD-TYPE        2        3         7        38         2
                               vv
clus                            STAGE IV
  DEL PEAK 12(8Q12.1) MUTATED          1
  DEL PEAK 12(8Q12.1) WILD-TYPE        1
D30V3, multiclass
                               vv
clus                            T1+T2 T3+T4
  DEL PEAK 12(8Q12.1) MUTATED       0     4
  DEL PEAK 12(8Q12.1) WILD-TYPE     6    47
D30V4, multiclass
       clus
vv      DEL PEAK 12(8Q12.1) MUTATED DEL PEAK 12(8Q12.1) WILD-TYPE
  T1+T2                           0                             6
  T3+T4                           4                            47
D30V5, binary
                               cls
clus                             0  1
  DEL PEAK 12(8Q12.1) MUTATED    1  3
  DEL PEAK 12(8Q12.1) WILD-TYPE 13 40
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 12(8Q12.1) MUTATED      1    3
  DEL PEAK 12(8Q12.1) WILD-TYPE   13   40
   clus
vv  DEL PEAK 12(8Q12.1) MUTATED DEL PEAK 12(8Q12.1) WILD-TYPE
  0                           1                            13
  1                           3                            40
                               vv
clus                            M0 M1 MX
  DEL PEAK 12(8Q12.1) MUTATED    1  1  2
  DEL PEAK 12(8Q12.1) WILD-TYPE 31  1 21
D30V6, multiclass
    clus
vv   DEL PEAK 12(8Q12.1) MUTATED DEL PEAK 12(8Q12.1) WILD-TYPE
  M0                           1                            31
  M1                           1                             1
  MX                           2                            21
D30V7, binary
                               cls
clus                             0  1
  DEL PEAK 12(8Q12.1) MUTATED    2  2
  DEL PEAK 12(8Q12.1) WILD-TYPE 29 24
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 12(8Q12.1) MUTATED      2    2
  DEL PEAK 12(8Q12.1) WILD-TYPE   29   24
        clus
vv       DEL PEAK 12(8Q12.1) MUTATED DEL PEAK 12(8Q12.1) WILD-TYPE
  FEMALE                           2                            29
  MALE                             2                            24
                               vv
clus                            PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  DEL PEAK 12(8Q12.1) MUTATED                                     3
  DEL PEAK 12(8Q12.1) WILD-TYPE                                  48
                               vv
clus                            PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  DEL PEAK 12(8Q12.1) MUTATED                                       1
  DEL PEAK 12(8Q12.1) WILD-TYPE                                     3
                               vv
clus                            PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  DEL PEAK 12(8Q12.1) MUTATED                                                  0
  DEL PEAK 12(8Q12.1) WILD-TYPE                                                1
D30V8, multiclass
                                                  clus
vv                                                 DEL PEAK 12(8Q12.1) MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                        3
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                      1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                           0
                                                  clus
vv                                                 DEL PEAK 12(8Q12.1) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                         48
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                        3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                             1
D30V9, continuous
D30V10, continuous
                               vv
clus                            R0 R1 RX
  DEL PEAK 12(8Q12.1) MUTATED    1  3  0
  DEL PEAK 12(8Q12.1) WILD-TYPE 31 18  2
D30V11, multiclass
    clus
vv   DEL PEAK 12(8Q12.1) MUTATED DEL PEAK 12(8Q12.1) WILD-TYPE
  R0                           1                            31
  R1                           3                            18
  RX                           0                             2
D30V12, continuous

Clustering(31) Variable = DEL PEAK 13(9P21.3) MUTATION ANALYSIS
D31V1, survival
                               sevent
clus2                            0  1
  DEL PEAK 13(9P21.3) MUTATED   19 11
  DEL PEAK 13(9P21.3) WILD-TYPE 16  8
  DEL PEAK 13(9P21.3) MUTATED DEL PEAK 13(9P21.3) WILD-TYPE 
                           30                            24 
  DEL PEAK 13(9P21.3) MUTATED DEL PEAK 13(9P21.3) WILD-TYPE 
                           11                             8 
$`DEL PEAK 13(9P21.3) MUTATED`
TCGA-F2-6879 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A545 TCGA-H6-8124 TCGA-HZ-7289 
       10.98         5.03         5.19         0.03        12.89         7.86 
TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7925 TCGA-HZ-8005 TCGA-HZ-8315 
        0.92         0.66         0.13        12.03         3.91         0.92 
TCGA-HZ-8636 TCGA-HZ-A49G TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 
        0.16         0.76         5.98         1.51        11.41        49.38 
TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 
        4.77        21.86        15.35        15.65        27.98         4.04 
TCGA-IB-7887 TCGA-IB-7890 TCGA-IB-7893 TCGA-IB-8127 TCGA-IB-A5SP TCGA-IB-A5SS 
        3.58        19.66         3.85        17.13         9.83        15.12 

$`DEL PEAK 13(9P21.3) WILD-TYPE`
TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-FB-A4P5 TCGA-H6-A45N TCGA-HZ-7923 
        9.96        11.84         7.07         0.13         7.63         0.26 
TCGA-HZ-7924 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8317 
       12.13         0.26         0.62         0.99         0.69         0.49 
TCGA-HZ-8519 TCGA-HZ-8638 TCGA-HZ-A49H TCGA-IB-7651 TCGA-IB-7888 TCGA-IB-7889 
        0.10         2.96         1.02        19.82        43.79        15.78 
TCGA-IB-7891 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-A5SO TCGA-IB-A5SQ TCGA-IB-A5ST 
       16.04        15.95         0.56        10.82         7.20         0.26 

  DEL PEAK 13(9P21.3) MUTATED DEL PEAK 13(9P21.3) WILD-TYPE 
                         0.03                          0.10 
  DEL PEAK 13(9P21.3) MUTATED DEL PEAK 13(9P21.3) WILD-TYPE 
                        49.38                         43.79 
  DEL PEAK 13(9P21.3) MUTATED DEL PEAK 13(9P21.3) WILD-TYPE 
                        5.585                         5.015 
[1] "0.0 - 49.4 (5.6)" "0.1 - 43.8 (5.0)"
                   TCGA-F2-6879                    TCGA-F2-6880 
  "DEL PEAK 13(9P21.3) MUTATED" "DEL PEAK 13(9P21.3) WILD-TYPE" 
                   TCGA-F2-7273                    TCGA-F2-7276 
"DEL PEAK 13(9P21.3) WILD-TYPE" "DEL PEAK 13(9P21.3) WILD-TYPE" 
                   TCGA-F2-A44G                    TCGA-F2-A44H 
  "DEL PEAK 13(9P21.3) MUTATED"   "DEL PEAK 13(9P21.3) MUTATED" 
                   TCGA-FB-A4P5                    TCGA-FB-A545 
"DEL PEAK 13(9P21.3) WILD-TYPE"   "DEL PEAK 13(9P21.3) MUTATED" 
                   TCGA-H6-8124                    TCGA-H6-A45N 
  "DEL PEAK 13(9P21.3) MUTATED" "DEL PEAK 13(9P21.3) WILD-TYPE" 
                   TCGA-HZ-7289                    TCGA-HZ-7918 
  "DEL PEAK 13(9P21.3) MUTATED"   "DEL PEAK 13(9P21.3) MUTATED" 
                   TCGA-HZ-7919                    TCGA-HZ-7922 
  "DEL PEAK 13(9P21.3) MUTATED"   "DEL PEAK 13(9P21.3) MUTATED" 
                   TCGA-HZ-7923                    TCGA-HZ-7924 
"DEL PEAK 13(9P21.3) WILD-TYPE" "DEL PEAK 13(9P21.3) WILD-TYPE" 
                   TCGA-HZ-7925                    TCGA-HZ-7926 
  "DEL PEAK 13(9P21.3) MUTATED" "DEL PEAK 13(9P21.3) WILD-TYPE" 
                   TCGA-HZ-8001                    TCGA-HZ-8002 
"DEL PEAK 13(9P21.3) WILD-TYPE" "DEL PEAK 13(9P21.3) WILD-TYPE" 
                   TCGA-HZ-8003                    TCGA-HZ-8005 
"DEL PEAK 13(9P21.3) WILD-TYPE"   "DEL PEAK 13(9P21.3) MUTATED" 
                   TCGA-HZ-8315                    TCGA-HZ-8317 
  "DEL PEAK 13(9P21.3) MUTATED" "DEL PEAK 13(9P21.3) WILD-TYPE" 
                   TCGA-HZ-8519                    TCGA-HZ-8636 
"DEL PEAK 13(9P21.3) WILD-TYPE"   "DEL PEAK 13(9P21.3) MUTATED" 
                   TCGA-HZ-8638                    TCGA-HZ-A49G 
"DEL PEAK 13(9P21.3) WILD-TYPE"   "DEL PEAK 13(9P21.3) MUTATED" 
                   TCGA-HZ-A49H                    TCGA-HZ-A4BH 
"DEL PEAK 13(9P21.3) WILD-TYPE"   "DEL PEAK 13(9P21.3) MUTATED" 
                   TCGA-HZ-A4BK                    TCGA-IB-7644 
  "DEL PEAK 13(9P21.3) MUTATED"   "DEL PEAK 13(9P21.3) MUTATED" 
                   TCGA-IB-7645                    TCGA-IB-7646 
  "DEL PEAK 13(9P21.3) MUTATED"   "DEL PEAK 13(9P21.3) MUTATED" 
                   TCGA-IB-7647                    TCGA-IB-7649 
  "DEL PEAK 13(9P21.3) MUTATED"   "DEL PEAK 13(9P21.3) MUTATED" 
                   TCGA-IB-7651                    TCGA-IB-7652 
"DEL PEAK 13(9P21.3) WILD-TYPE"   "DEL PEAK 13(9P21.3) MUTATED" 
                   TCGA-IB-7885                    TCGA-IB-7886 
  "DEL PEAK 13(9P21.3) MUTATED"   "DEL PEAK 13(9P21.3) MUTATED" 
                   TCGA-IB-7887                    TCGA-IB-7888 
  "DEL PEAK 13(9P21.3) MUTATED" "DEL PEAK 13(9P21.3) WILD-TYPE" 
                   TCGA-IB-7889                    TCGA-IB-7890 
"DEL PEAK 13(9P21.3) WILD-TYPE"   "DEL PEAK 13(9P21.3) MUTATED" 
                   TCGA-IB-7891                    TCGA-IB-7893 
"DEL PEAK 13(9P21.3) WILD-TYPE"   "DEL PEAK 13(9P21.3) MUTATED" 
                   TCGA-IB-7897                    TCGA-IB-8126 
"DEL PEAK 13(9P21.3) WILD-TYPE" "DEL PEAK 13(9P21.3) WILD-TYPE" 
                   TCGA-IB-8127                    TCGA-IB-A5SO 
  "DEL PEAK 13(9P21.3) MUTATED" "DEL PEAK 13(9P21.3) WILD-TYPE" 
                   TCGA-IB-A5SP                    TCGA-IB-A5SQ 
  "DEL PEAK 13(9P21.3) MUTATED" "DEL PEAK 13(9P21.3) WILD-TYPE" 
                   TCGA-IB-A5SS                    TCGA-IB-A5ST 
  "DEL PEAK 13(9P21.3) MUTATED" "DEL PEAK 13(9P21.3) WILD-TYPE" 
                   TCGA-F2-6879                    TCGA-F2-6880 
  "DEL PEAK 13(9P21.3) MUTATED" "DEL PEAK 13(9P21.3) WILD-TYPE" 
                   TCGA-F2-7273                    TCGA-F2-7276 
"DEL PEAK 13(9P21.3) WILD-TYPE" "DEL PEAK 13(9P21.3) WILD-TYPE" 
                   TCGA-F2-A44G                    TCGA-F2-A44H 
  "DEL PEAK 13(9P21.3) MUTATED"   "DEL PEAK 13(9P21.3) MUTATED" 
                   TCGA-FB-A4P5                    TCGA-FB-A545 
"DEL PEAK 13(9P21.3) WILD-TYPE"   "DEL PEAK 13(9P21.3) MUTATED" 
                   TCGA-H6-8124                    TCGA-H6-A45N 
  "DEL PEAK 13(9P21.3) MUTATED" "DEL PEAK 13(9P21.3) WILD-TYPE" 
                   TCGA-HZ-7289                    TCGA-HZ-7918 
  "DEL PEAK 13(9P21.3) MUTATED"   "DEL PEAK 13(9P21.3) MUTATED" 
                   TCGA-HZ-7919                    TCGA-HZ-7922 
  "DEL PEAK 13(9P21.3) MUTATED"   "DEL PEAK 13(9P21.3) MUTATED" 
                   TCGA-HZ-7923                    TCGA-HZ-7924 
"DEL PEAK 13(9P21.3) WILD-TYPE" "DEL PEAK 13(9P21.3) WILD-TYPE" 
                   TCGA-HZ-7925                    TCGA-HZ-7926 
  "DEL PEAK 13(9P21.3) MUTATED" "DEL PEAK 13(9P21.3) WILD-TYPE" 
                   TCGA-HZ-8001                    TCGA-HZ-8002 
"DEL PEAK 13(9P21.3) WILD-TYPE" "DEL PEAK 13(9P21.3) WILD-TYPE" 
                   TCGA-HZ-8003                    TCGA-HZ-8005 
"DEL PEAK 13(9P21.3) WILD-TYPE"   "DEL PEAK 13(9P21.3) MUTATED" 
                   TCGA-HZ-8315                    TCGA-HZ-8317 
  "DEL PEAK 13(9P21.3) MUTATED" "DEL PEAK 13(9P21.3) WILD-TYPE" 
                   TCGA-HZ-8519                    TCGA-HZ-8636 
"DEL PEAK 13(9P21.3) WILD-TYPE"   "DEL PEAK 13(9P21.3) MUTATED" 
                   TCGA-HZ-8638                    TCGA-HZ-A49G 
"DEL PEAK 13(9P21.3) WILD-TYPE"   "DEL PEAK 13(9P21.3) MUTATED" 
                   TCGA-HZ-A49H                    TCGA-HZ-A4BH 
"DEL PEAK 13(9P21.3) WILD-TYPE"   "DEL PEAK 13(9P21.3) MUTATED" 
                   TCGA-HZ-A4BK                    TCGA-IB-7644 
  "DEL PEAK 13(9P21.3) MUTATED"   "DEL PEAK 13(9P21.3) MUTATED" 
                   TCGA-IB-7645                    TCGA-IB-7646 
  "DEL PEAK 13(9P21.3) MUTATED"   "DEL PEAK 13(9P21.3) MUTATED" 
                   TCGA-IB-7647                    TCGA-IB-7649 
  "DEL PEAK 13(9P21.3) MUTATED"   "DEL PEAK 13(9P21.3) MUTATED" 
                   TCGA-IB-7651                    TCGA-IB-7652 
"DEL PEAK 13(9P21.3) WILD-TYPE"   "DEL PEAK 13(9P21.3) MUTATED" 
                   TCGA-IB-7885                    TCGA-IB-7886 
  "DEL PEAK 13(9P21.3) MUTATED"   "DEL PEAK 13(9P21.3) MUTATED" 
                   TCGA-IB-7887                    TCGA-IB-7888 
  "DEL PEAK 13(9P21.3) MUTATED" "DEL PEAK 13(9P21.3) WILD-TYPE" 
                   TCGA-IB-7889                    TCGA-IB-7890 
"DEL PEAK 13(9P21.3) WILD-TYPE"   "DEL PEAK 13(9P21.3) MUTATED" 
                   TCGA-IB-7891                    TCGA-IB-7893 
"DEL PEAK 13(9P21.3) WILD-TYPE"   "DEL PEAK 13(9P21.3) MUTATED" 
                   TCGA-IB-7897                    TCGA-IB-8126 
"DEL PEAK 13(9P21.3) WILD-TYPE" "DEL PEAK 13(9P21.3) WILD-TYPE" 
                   TCGA-IB-8127                    TCGA-IB-A5SO 
  "DEL PEAK 13(9P21.3) MUTATED" "DEL PEAK 13(9P21.3) WILD-TYPE" 
                   TCGA-IB-A5SP                    TCGA-IB-A5SQ 
  "DEL PEAK 13(9P21.3) MUTATED" "DEL PEAK 13(9P21.3) WILD-TYPE" 
                   TCGA-IB-A5SS                    TCGA-IB-A5ST 
  "DEL PEAK 13(9P21.3) MUTATED" "DEL PEAK 13(9P21.3) WILD-TYPE" 
                   TCGA-F2-6879                    TCGA-F2-6880 
  "DEL PEAK 13(9P21.3) MUTATED" "DEL PEAK 13(9P21.3) WILD-TYPE" 
                   TCGA-F2-7273                    TCGA-F2-7276 
"DEL PEAK 13(9P21.3) WILD-TYPE" "DEL PEAK 13(9P21.3) WILD-TYPE" 
                   TCGA-F2-A44G                    TCGA-F2-A44H 
  "DEL PEAK 13(9P21.3) MUTATED"   "DEL PEAK 13(9P21.3) MUTATED" 
                   TCGA-FB-A4P5                    TCGA-FB-A545 
"DEL PEAK 13(9P21.3) WILD-TYPE"   "DEL PEAK 13(9P21.3) MUTATED" 
                   TCGA-H6-8124                    TCGA-H6-A45N 
  "DEL PEAK 13(9P21.3) MUTATED" "DEL PEAK 13(9P21.3) WILD-TYPE" 
                   TCGA-HZ-7289                    TCGA-HZ-7918 
  "DEL PEAK 13(9P21.3) MUTATED"   "DEL PEAK 13(9P21.3) MUTATED" 
                   TCGA-HZ-7919                    TCGA-HZ-7922 
  "DEL PEAK 13(9P21.3) MUTATED"   "DEL PEAK 13(9P21.3) MUTATED" 
                   TCGA-HZ-7923                    TCGA-HZ-7924 
"DEL PEAK 13(9P21.3) WILD-TYPE" "DEL PEAK 13(9P21.3) WILD-TYPE" 
                   TCGA-HZ-7925                    TCGA-HZ-7926 
  "DEL PEAK 13(9P21.3) MUTATED" "DEL PEAK 13(9P21.3) WILD-TYPE" 
                   TCGA-HZ-8001                    TCGA-HZ-8002 
"DEL PEAK 13(9P21.3) WILD-TYPE" "DEL PEAK 13(9P21.3) WILD-TYPE" 
                   TCGA-HZ-8003                    TCGA-HZ-8005 
"DEL PEAK 13(9P21.3) WILD-TYPE"   "DEL PEAK 13(9P21.3) MUTATED" 
                   TCGA-HZ-8315                    TCGA-HZ-8317 
  "DEL PEAK 13(9P21.3) MUTATED" "DEL PEAK 13(9P21.3) WILD-TYPE" 
                   TCGA-HZ-8519                    TCGA-HZ-8636 
"DEL PEAK 13(9P21.3) WILD-TYPE"   "DEL PEAK 13(9P21.3) MUTATED" 
                   TCGA-HZ-8638                    TCGA-HZ-A49G 
"DEL PEAK 13(9P21.3) WILD-TYPE"   "DEL PEAK 13(9P21.3) MUTATED" 
                   TCGA-HZ-A49H                    TCGA-HZ-A4BH 
"DEL PEAK 13(9P21.3) WILD-TYPE"   "DEL PEAK 13(9P21.3) MUTATED" 
                   TCGA-HZ-A4BK                    TCGA-IB-7644 
  "DEL PEAK 13(9P21.3) MUTATED"   "DEL PEAK 13(9P21.3) MUTATED" 
                   TCGA-IB-7645                    TCGA-IB-7646 
  "DEL PEAK 13(9P21.3) MUTATED"   "DEL PEAK 13(9P21.3) MUTATED" 
                   TCGA-IB-7647                    TCGA-IB-7649 
  "DEL PEAK 13(9P21.3) MUTATED"   "DEL PEAK 13(9P21.3) MUTATED" 
                   TCGA-IB-7651                    TCGA-IB-7652 
"DEL PEAK 13(9P21.3) WILD-TYPE"   "DEL PEAK 13(9P21.3) MUTATED" 
                   TCGA-IB-7885                    TCGA-IB-7886 
  "DEL PEAK 13(9P21.3) MUTATED"   "DEL PEAK 13(9P21.3) MUTATED" 
                   TCGA-IB-7887                    TCGA-IB-7888 
  "DEL PEAK 13(9P21.3) MUTATED" "DEL PEAK 13(9P21.3) WILD-TYPE" 
                   TCGA-IB-7889                    TCGA-IB-7890 
"DEL PEAK 13(9P21.3) WILD-TYPE"   "DEL PEAK 13(9P21.3) MUTATED" 
                   TCGA-IB-7891                    TCGA-IB-7893 
"DEL PEAK 13(9P21.3) WILD-TYPE"   "DEL PEAK 13(9P21.3) MUTATED" 
                   TCGA-IB-7897                    TCGA-IB-8126 
"DEL PEAK 13(9P21.3) WILD-TYPE" "DEL PEAK 13(9P21.3) WILD-TYPE" 
                   TCGA-IB-8127                    TCGA-IB-A5SO 
  "DEL PEAK 13(9P21.3) MUTATED" "DEL PEAK 13(9P21.3) WILD-TYPE" 
                   TCGA-IB-A5SP                    TCGA-IB-A5SQ 
  "DEL PEAK 13(9P21.3) MUTATED" "DEL PEAK 13(9P21.3) WILD-TYPE" 
                   TCGA-IB-A5SS                    TCGA-IB-A5ST 
  "DEL PEAK 13(9P21.3) MUTATED" "DEL PEAK 13(9P21.3) WILD-TYPE" 
[1] "hr=" "1.2"
D31V2, continuous
                               vv
clus                            STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III
  DEL PEAK 13(9P21.3) MUTATED          0        1         4        25         0
  DEL PEAK 13(9P21.3) WILD-TYPE        2        2         3        16         2
                               vv
clus                            STAGE IV
  DEL PEAK 13(9P21.3) MUTATED          2
  DEL PEAK 13(9P21.3) WILD-TYPE        0
D31V3, multiclass
                               vv
clus                            T1+T2 T3+T4
  DEL PEAK 13(9P21.3) MUTATED       2    30
  DEL PEAK 13(9P21.3) WILD-TYPE     4    21
D31V4, multiclass
       clus
vv      DEL PEAK 13(9P21.3) MUTATED DEL PEAK 13(9P21.3) WILD-TYPE
  T1+T2                           2                             4
  T3+T4                          30                            21
D31V5, binary
                               cls
clus                             0  1
  DEL PEAK 13(9P21.3) MUTATED    6 26
  DEL PEAK 13(9P21.3) WILD-TYPE  8 17
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 13(9P21.3) MUTATED      6   26
  DEL PEAK 13(9P21.3) WILD-TYPE    8   17
   clus
vv  DEL PEAK 13(9P21.3) MUTATED DEL PEAK 13(9P21.3) WILD-TYPE
  0                           6                             8
  1                          26                            17
                               vv
clus                            M0 M1 MX
  DEL PEAK 13(9P21.3) MUTATED   20  2 10
  DEL PEAK 13(9P21.3) WILD-TYPE 12  0 13
D31V6, multiclass
    clus
vv   DEL PEAK 13(9P21.3) MUTATED DEL PEAK 13(9P21.3) WILD-TYPE
  M0                          20                            12
  M1                           2                             0
  MX                          10                            13
D31V7, binary
                               cls
clus                             0  1
  DEL PEAK 13(9P21.3) MUTATED   17 15
  DEL PEAK 13(9P21.3) WILD-TYPE 14 11
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 13(9P21.3) MUTATED     17   15
  DEL PEAK 13(9P21.3) WILD-TYPE   14   11
        clus
vv       DEL PEAK 13(9P21.3) MUTATED DEL PEAK 13(9P21.3) WILD-TYPE
  FEMALE                          17                            14
  MALE                            15                            11
                               vv
clus                            PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  DEL PEAK 13(9P21.3) MUTATED                                    29
  DEL PEAK 13(9P21.3) WILD-TYPE                                  22
                               vv
clus                            PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  DEL PEAK 13(9P21.3) MUTATED                                       2
  DEL PEAK 13(9P21.3) WILD-TYPE                                     2
                               vv
clus                            PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  DEL PEAK 13(9P21.3) MUTATED                                                  0
  DEL PEAK 13(9P21.3) WILD-TYPE                                                1
D31V8, multiclass
                                                  clus
vv                                                 DEL PEAK 13(9P21.3) MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                       29
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                      2
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                           0
                                                  clus
vv                                                 DEL PEAK 13(9P21.3) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                         22
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                        2
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                             1
D31V9, continuous
D31V10, continuous
                               vv
clus                            R0 R1 RX
  DEL PEAK 13(9P21.3) MUTATED   12 18  1
  DEL PEAK 13(9P21.3) WILD-TYPE 20  3  1
D31V11, multiclass
    clus
vv   DEL PEAK 13(9P21.3) MUTATED DEL PEAK 13(9P21.3) WILD-TYPE
  R0                          12                            20
  R1                          18                             3
  RX                           1                             1
D31V12, continuous

Clustering(32) Variable = DEL PEAK 14(9Q22.33) MUTATION ANALYSIS
D32V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 14(9Q22.33) MUTATED    8  4
  DEL PEAK 14(9Q22.33) WILD-TYPE 27 15
  DEL PEAK 14(9Q22.33) MUTATED DEL PEAK 14(9Q22.33) WILD-TYPE 
                            12                             42 
  DEL PEAK 14(9Q22.33) MUTATED DEL PEAK 14(9Q22.33) WILD-TYPE 
                             4                             15 
$`DEL PEAK 14(9Q22.33) MUTATED`
TCGA-F2-A44G TCGA-F2-A44H TCGA-H6-8124 TCGA-HZ-7918 TCGA-HZ-7922 TCGA-HZ-8005 
        5.03         5.19        12.89         0.92         0.13         3.91 
TCGA-HZ-A49G TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7645 TCGA-IB-7649 TCGA-IB-7893 
        0.76         5.98         1.51        49.38        15.35         3.85 

$`DEL PEAK 14(9Q22.33) WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-FB-A4P5 TCGA-FB-A545 
       10.98         9.96        11.84         7.07         0.13         0.03 
TCGA-H6-A45N TCGA-HZ-7289 TCGA-HZ-7919 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
        7.63         7.86         0.66         0.26        12.13        12.03 
TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8315 TCGA-HZ-8317 
        0.26         0.62         0.99         0.69         0.92         0.49 
TCGA-HZ-8519 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49H TCGA-IB-7644 TCGA-IB-7646 
        0.10         0.16         2.96         1.02        11.41         4.77 
TCGA-IB-7647 TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 
       21.86        19.82        15.65        27.98         4.04         3.58 
TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7897 TCGA-IB-8126 
       43.79        15.78        19.66        16.04        15.95         0.56 
TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST 
       17.13        10.82         9.83         7.20        15.12         0.26 

  DEL PEAK 14(9Q22.33) MUTATED DEL PEAK 14(9Q22.33) WILD-TYPE 
                          0.13                           0.03 
  DEL PEAK 14(9Q22.33) MUTATED DEL PEAK 14(9Q22.33) WILD-TYPE 
                         49.38                          43.79 
  DEL PEAK 14(9Q22.33) MUTATED DEL PEAK 14(9Q22.33) WILD-TYPE 
                         4.470                          7.415 
[1] "0.1 - 49.4 (4.5)" "0.0 - 43.8 (7.4)"
                    TCGA-F2-6879                     TCGA-F2-6880 
"DEL PEAK 14(9Q22.33) WILD-TYPE" "DEL PEAK 14(9Q22.33) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"DEL PEAK 14(9Q22.33) WILD-TYPE" "DEL PEAK 14(9Q22.33) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
  "DEL PEAK 14(9Q22.33) MUTATED"   "DEL PEAK 14(9Q22.33) MUTATED" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"DEL PEAK 14(9Q22.33) WILD-TYPE" "DEL PEAK 14(9Q22.33) WILD-TYPE" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
  "DEL PEAK 14(9Q22.33) MUTATED" "DEL PEAK 14(9Q22.33) WILD-TYPE" 
                    TCGA-HZ-7289                     TCGA-HZ-7918 
"DEL PEAK 14(9Q22.33) WILD-TYPE"   "DEL PEAK 14(9Q22.33) MUTATED" 
                    TCGA-HZ-7919                     TCGA-HZ-7922 
"DEL PEAK 14(9Q22.33) WILD-TYPE"   "DEL PEAK 14(9Q22.33) MUTATED" 
                    TCGA-HZ-7923                     TCGA-HZ-7924 
"DEL PEAK 14(9Q22.33) WILD-TYPE" "DEL PEAK 14(9Q22.33) WILD-TYPE" 
                    TCGA-HZ-7925                     TCGA-HZ-7926 
"DEL PEAK 14(9Q22.33) WILD-TYPE" "DEL PEAK 14(9Q22.33) WILD-TYPE" 
                    TCGA-HZ-8001                     TCGA-HZ-8002 
"DEL PEAK 14(9Q22.33) WILD-TYPE" "DEL PEAK 14(9Q22.33) WILD-TYPE" 
                    TCGA-HZ-8003                     TCGA-HZ-8005 
"DEL PEAK 14(9Q22.33) WILD-TYPE"   "DEL PEAK 14(9Q22.33) MUTATED" 
                    TCGA-HZ-8315                     TCGA-HZ-8317 
"DEL PEAK 14(9Q22.33) WILD-TYPE" "DEL PEAK 14(9Q22.33) WILD-TYPE" 
                    TCGA-HZ-8519                     TCGA-HZ-8636 
"DEL PEAK 14(9Q22.33) WILD-TYPE" "DEL PEAK 14(9Q22.33) WILD-TYPE" 
                    TCGA-HZ-8638                     TCGA-HZ-A49G 
"DEL PEAK 14(9Q22.33) WILD-TYPE"   "DEL PEAK 14(9Q22.33) MUTATED" 
                    TCGA-HZ-A49H                     TCGA-HZ-A4BH 
"DEL PEAK 14(9Q22.33) WILD-TYPE"   "DEL PEAK 14(9Q22.33) MUTATED" 
                    TCGA-HZ-A4BK                     TCGA-IB-7644 
  "DEL PEAK 14(9Q22.33) MUTATED" "DEL PEAK 14(9Q22.33) WILD-TYPE" 
                    TCGA-IB-7645                     TCGA-IB-7646 
  "DEL PEAK 14(9Q22.33) MUTATED" "DEL PEAK 14(9Q22.33) WILD-TYPE" 
                    TCGA-IB-7647                     TCGA-IB-7649 
"DEL PEAK 14(9Q22.33) WILD-TYPE"   "DEL PEAK 14(9Q22.33) MUTATED" 
                    TCGA-IB-7651                     TCGA-IB-7652 
"DEL PEAK 14(9Q22.33) WILD-TYPE" "DEL PEAK 14(9Q22.33) WILD-TYPE" 
                    TCGA-IB-7885                     TCGA-IB-7886 
"DEL PEAK 14(9Q22.33) WILD-TYPE" "DEL PEAK 14(9Q22.33) WILD-TYPE" 
                    TCGA-IB-7887                     TCGA-IB-7888 
"DEL PEAK 14(9Q22.33) WILD-TYPE" "DEL PEAK 14(9Q22.33) WILD-TYPE" 
                    TCGA-IB-7889                     TCGA-IB-7890 
"DEL PEAK 14(9Q22.33) WILD-TYPE" "DEL PEAK 14(9Q22.33) WILD-TYPE" 
                    TCGA-IB-7891                     TCGA-IB-7893 
"DEL PEAK 14(9Q22.33) WILD-TYPE"   "DEL PEAK 14(9Q22.33) MUTATED" 
                    TCGA-IB-7897                     TCGA-IB-8126 
"DEL PEAK 14(9Q22.33) WILD-TYPE" "DEL PEAK 14(9Q22.33) WILD-TYPE" 
                    TCGA-IB-8127                     TCGA-IB-A5SO 
"DEL PEAK 14(9Q22.33) WILD-TYPE" "DEL PEAK 14(9Q22.33) WILD-TYPE" 
                    TCGA-IB-A5SP                     TCGA-IB-A5SQ 
"DEL PEAK 14(9Q22.33) WILD-TYPE" "DEL PEAK 14(9Q22.33) WILD-TYPE" 
                    TCGA-IB-A5SS                     TCGA-IB-A5ST 
"DEL PEAK 14(9Q22.33) WILD-TYPE" "DEL PEAK 14(9Q22.33) WILD-TYPE" 
                    TCGA-F2-6879                     TCGA-F2-6880 
"DEL PEAK 14(9Q22.33) WILD-TYPE" "DEL PEAK 14(9Q22.33) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"DEL PEAK 14(9Q22.33) WILD-TYPE" "DEL PEAK 14(9Q22.33) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
  "DEL PEAK 14(9Q22.33) MUTATED"   "DEL PEAK 14(9Q22.33) MUTATED" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"DEL PEAK 14(9Q22.33) WILD-TYPE" "DEL PEAK 14(9Q22.33) WILD-TYPE" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
  "DEL PEAK 14(9Q22.33) MUTATED" "DEL PEAK 14(9Q22.33) WILD-TYPE" 
                    TCGA-HZ-7289                     TCGA-HZ-7918 
"DEL PEAK 14(9Q22.33) WILD-TYPE"   "DEL PEAK 14(9Q22.33) MUTATED" 
                    TCGA-HZ-7919                     TCGA-HZ-7922 
"DEL PEAK 14(9Q22.33) WILD-TYPE"   "DEL PEAK 14(9Q22.33) MUTATED" 
                    TCGA-HZ-7923                     TCGA-HZ-7924 
"DEL PEAK 14(9Q22.33) WILD-TYPE" "DEL PEAK 14(9Q22.33) WILD-TYPE" 
                    TCGA-HZ-7925                     TCGA-HZ-7926 
"DEL PEAK 14(9Q22.33) WILD-TYPE" "DEL PEAK 14(9Q22.33) WILD-TYPE" 
                    TCGA-HZ-8001                     TCGA-HZ-8002 
"DEL PEAK 14(9Q22.33) WILD-TYPE" "DEL PEAK 14(9Q22.33) WILD-TYPE" 
                    TCGA-HZ-8003                     TCGA-HZ-8005 
"DEL PEAK 14(9Q22.33) WILD-TYPE"   "DEL PEAK 14(9Q22.33) MUTATED" 
                    TCGA-HZ-8315                     TCGA-HZ-8317 
"DEL PEAK 14(9Q22.33) WILD-TYPE" "DEL PEAK 14(9Q22.33) WILD-TYPE" 
                    TCGA-HZ-8519                     TCGA-HZ-8636 
"DEL PEAK 14(9Q22.33) WILD-TYPE" "DEL PEAK 14(9Q22.33) WILD-TYPE" 
                    TCGA-HZ-8638                     TCGA-HZ-A49G 
"DEL PEAK 14(9Q22.33) WILD-TYPE"   "DEL PEAK 14(9Q22.33) MUTATED" 
                    TCGA-HZ-A49H                     TCGA-HZ-A4BH 
"DEL PEAK 14(9Q22.33) WILD-TYPE"   "DEL PEAK 14(9Q22.33) MUTATED" 
                    TCGA-HZ-A4BK                     TCGA-IB-7644 
  "DEL PEAK 14(9Q22.33) MUTATED" "DEL PEAK 14(9Q22.33) WILD-TYPE" 
                    TCGA-IB-7645                     TCGA-IB-7646 
  "DEL PEAK 14(9Q22.33) MUTATED" "DEL PEAK 14(9Q22.33) WILD-TYPE" 
                    TCGA-IB-7647                     TCGA-IB-7649 
"DEL PEAK 14(9Q22.33) WILD-TYPE"   "DEL PEAK 14(9Q22.33) MUTATED" 
                    TCGA-IB-7651                     TCGA-IB-7652 
"DEL PEAK 14(9Q22.33) WILD-TYPE" "DEL PEAK 14(9Q22.33) WILD-TYPE" 
                    TCGA-IB-7885                     TCGA-IB-7886 
"DEL PEAK 14(9Q22.33) WILD-TYPE" "DEL PEAK 14(9Q22.33) WILD-TYPE" 
                    TCGA-IB-7887                     TCGA-IB-7888 
"DEL PEAK 14(9Q22.33) WILD-TYPE" "DEL PEAK 14(9Q22.33) WILD-TYPE" 
                    TCGA-IB-7889                     TCGA-IB-7890 
"DEL PEAK 14(9Q22.33) WILD-TYPE" "DEL PEAK 14(9Q22.33) WILD-TYPE" 
                    TCGA-IB-7891                     TCGA-IB-7893 
"DEL PEAK 14(9Q22.33) WILD-TYPE"   "DEL PEAK 14(9Q22.33) MUTATED" 
                    TCGA-IB-7897                     TCGA-IB-8126 
"DEL PEAK 14(9Q22.33) WILD-TYPE" "DEL PEAK 14(9Q22.33) WILD-TYPE" 
                    TCGA-IB-8127                     TCGA-IB-A5SO 
"DEL PEAK 14(9Q22.33) WILD-TYPE" "DEL PEAK 14(9Q22.33) WILD-TYPE" 
                    TCGA-IB-A5SP                     TCGA-IB-A5SQ 
"DEL PEAK 14(9Q22.33) WILD-TYPE" "DEL PEAK 14(9Q22.33) WILD-TYPE" 
                    TCGA-IB-A5SS                     TCGA-IB-A5ST 
"DEL PEAK 14(9Q22.33) WILD-TYPE" "DEL PEAK 14(9Q22.33) WILD-TYPE" 
                    TCGA-F2-6879                     TCGA-F2-6880 
"DEL PEAK 14(9Q22.33) WILD-TYPE" "DEL PEAK 14(9Q22.33) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"DEL PEAK 14(9Q22.33) WILD-TYPE" "DEL PEAK 14(9Q22.33) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
  "DEL PEAK 14(9Q22.33) MUTATED"   "DEL PEAK 14(9Q22.33) MUTATED" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"DEL PEAK 14(9Q22.33) WILD-TYPE" "DEL PEAK 14(9Q22.33) WILD-TYPE" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
  "DEL PEAK 14(9Q22.33) MUTATED" "DEL PEAK 14(9Q22.33) WILD-TYPE" 
                    TCGA-HZ-7289                     TCGA-HZ-7918 
"DEL PEAK 14(9Q22.33) WILD-TYPE"   "DEL PEAK 14(9Q22.33) MUTATED" 
                    TCGA-HZ-7919                     TCGA-HZ-7922 
"DEL PEAK 14(9Q22.33) WILD-TYPE"   "DEL PEAK 14(9Q22.33) MUTATED" 
                    TCGA-HZ-7923                     TCGA-HZ-7924 
"DEL PEAK 14(9Q22.33) WILD-TYPE" "DEL PEAK 14(9Q22.33) WILD-TYPE" 
                    TCGA-HZ-7925                     TCGA-HZ-7926 
"DEL PEAK 14(9Q22.33) WILD-TYPE" "DEL PEAK 14(9Q22.33) WILD-TYPE" 
                    TCGA-HZ-8001                     TCGA-HZ-8002 
"DEL PEAK 14(9Q22.33) WILD-TYPE" "DEL PEAK 14(9Q22.33) WILD-TYPE" 
                    TCGA-HZ-8003                     TCGA-HZ-8005 
"DEL PEAK 14(9Q22.33) WILD-TYPE"   "DEL PEAK 14(9Q22.33) MUTATED" 
                    TCGA-HZ-8315                     TCGA-HZ-8317 
"DEL PEAK 14(9Q22.33) WILD-TYPE" "DEL PEAK 14(9Q22.33) WILD-TYPE" 
                    TCGA-HZ-8519                     TCGA-HZ-8636 
"DEL PEAK 14(9Q22.33) WILD-TYPE" "DEL PEAK 14(9Q22.33) WILD-TYPE" 
                    TCGA-HZ-8638                     TCGA-HZ-A49G 
"DEL PEAK 14(9Q22.33) WILD-TYPE"   "DEL PEAK 14(9Q22.33) MUTATED" 
                    TCGA-HZ-A49H                     TCGA-HZ-A4BH 
"DEL PEAK 14(9Q22.33) WILD-TYPE"   "DEL PEAK 14(9Q22.33) MUTATED" 
                    TCGA-HZ-A4BK                     TCGA-IB-7644 
  "DEL PEAK 14(9Q22.33) MUTATED" "DEL PEAK 14(9Q22.33) WILD-TYPE" 
                    TCGA-IB-7645                     TCGA-IB-7646 
  "DEL PEAK 14(9Q22.33) MUTATED" "DEL PEAK 14(9Q22.33) WILD-TYPE" 
                    TCGA-IB-7647                     TCGA-IB-7649 
"DEL PEAK 14(9Q22.33) WILD-TYPE"   "DEL PEAK 14(9Q22.33) MUTATED" 
                    TCGA-IB-7651                     TCGA-IB-7652 
"DEL PEAK 14(9Q22.33) WILD-TYPE" "DEL PEAK 14(9Q22.33) WILD-TYPE" 
                    TCGA-IB-7885                     TCGA-IB-7886 
"DEL PEAK 14(9Q22.33) WILD-TYPE" "DEL PEAK 14(9Q22.33) WILD-TYPE" 
                    TCGA-IB-7887                     TCGA-IB-7888 
"DEL PEAK 14(9Q22.33) WILD-TYPE" "DEL PEAK 14(9Q22.33) WILD-TYPE" 
                    TCGA-IB-7889                     TCGA-IB-7890 
"DEL PEAK 14(9Q22.33) WILD-TYPE" "DEL PEAK 14(9Q22.33) WILD-TYPE" 
                    TCGA-IB-7891                     TCGA-IB-7893 
"DEL PEAK 14(9Q22.33) WILD-TYPE"   "DEL PEAK 14(9Q22.33) MUTATED" 
                    TCGA-IB-7897                     TCGA-IB-8126 
"DEL PEAK 14(9Q22.33) WILD-TYPE" "DEL PEAK 14(9Q22.33) WILD-TYPE" 
                    TCGA-IB-8127                     TCGA-IB-A5SO 
"DEL PEAK 14(9Q22.33) WILD-TYPE" "DEL PEAK 14(9Q22.33) WILD-TYPE" 
                    TCGA-IB-A5SP                     TCGA-IB-A5SQ 
"DEL PEAK 14(9Q22.33) WILD-TYPE" "DEL PEAK 14(9Q22.33) WILD-TYPE" 
                    TCGA-IB-A5SS                     TCGA-IB-A5ST 
"DEL PEAK 14(9Q22.33) WILD-TYPE" "DEL PEAK 14(9Q22.33) WILD-TYPE" 
[1] "hr=" "1.2"
D32V2, continuous
                                vv
clus                             STAGE IA STAGE IB STAGE IIA STAGE IIB
  DEL PEAK 14(9Q22.33) MUTATED          0        0         2        11
  DEL PEAK 14(9Q22.33) WILD-TYPE        2        3         5        30
                                vv
clus                             STAGE III STAGE IV
  DEL PEAK 14(9Q22.33) MUTATED           0        0
  DEL PEAK 14(9Q22.33) WILD-TYPE         2        2
D32V3, multiclass
                                vv
clus                             T1+T2 T3+T4
  DEL PEAK 14(9Q22.33) MUTATED       1    12
  DEL PEAK 14(9Q22.33) WILD-TYPE     5    39
D32V4, multiclass
       clus
vv      DEL PEAK 14(9Q22.33) MUTATED DEL PEAK 14(9Q22.33) WILD-TYPE
  T1+T2                            1                              5
  T3+T4                           12                             39
D32V5, binary
                                cls
clus                              0  1
  DEL PEAK 14(9Q22.33) MUTATED    2 11
  DEL PEAK 14(9Q22.33) WILD-TYPE 12 32
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 14(9Q22.33) MUTATED      2   11
  DEL PEAK 14(9Q22.33) WILD-TYPE   12   32
   clus
vv  DEL PEAK 14(9Q22.33) MUTATED DEL PEAK 14(9Q22.33) WILD-TYPE
  0                            2                             12
  1                           11                             32
                                vv
clus                             M0 M1 MX
  DEL PEAK 14(9Q22.33) MUTATED    7  0  6
  DEL PEAK 14(9Q22.33) WILD-TYPE 25  2 17
D32V6, multiclass
    clus
vv   DEL PEAK 14(9Q22.33) MUTATED DEL PEAK 14(9Q22.33) WILD-TYPE
  M0                            7                             25
  M1                            0                              2
  MX                            6                             17
D32V7, binary
                                cls
clus                              0  1
  DEL PEAK 14(9Q22.33) MUTATED    7  6
  DEL PEAK 14(9Q22.33) WILD-TYPE 24 20
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 14(9Q22.33) MUTATED      7    6
  DEL PEAK 14(9Q22.33) WILD-TYPE   24   20
        clus
vv       DEL PEAK 14(9Q22.33) MUTATED DEL PEAK 14(9Q22.33) WILD-TYPE
  FEMALE                            7                             24
  MALE                              6                             20
                                vv
clus                             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  DEL PEAK 14(9Q22.33) MUTATED                                    12
  DEL PEAK 14(9Q22.33) WILD-TYPE                                  39
                                vv
clus                             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  DEL PEAK 14(9Q22.33) MUTATED                                       1
  DEL PEAK 14(9Q22.33) WILD-TYPE                                     3
                                vv
clus                             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  DEL PEAK 14(9Q22.33) MUTATED                                                  0
  DEL PEAK 14(9Q22.33) WILD-TYPE                                                1
D32V8, multiclass
                                                  clus
vv                                                 DEL PEAK 14(9Q22.33) MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                        12
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                       1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                            0
                                                  clus
vv                                                 DEL PEAK 14(9Q22.33) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                          39
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                         3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                              1
D32V9, continuous
[1] "Remove cluster labels:"       "DEL PEAK 14(9Q22.33) MUTATED"
clus
  DEL PEAK 14(9Q22.33) MUTATED DEL PEAK 14(9Q22.33) WILD-TYPE 
                             2                             12 
                    TCGA-F2-6880                     TCGA-FB-A4P5 
"DEL PEAK 14(9Q22.33) WILD-TYPE" "DEL PEAK 14(9Q22.33) WILD-TYPE" 
                    TCGA-H6-A45N                     TCGA-IB-7644 
"DEL PEAK 14(9Q22.33) WILD-TYPE" "DEL PEAK 14(9Q22.33) WILD-TYPE" 
                    TCGA-IB-7651                     TCGA-IB-7885 
"DEL PEAK 14(9Q22.33) WILD-TYPE" "DEL PEAK 14(9Q22.33) WILD-TYPE" 
                    TCGA-IB-7886                     TCGA-IB-7887 
"DEL PEAK 14(9Q22.33) WILD-TYPE" "DEL PEAK 14(9Q22.33) WILD-TYPE" 
                    TCGA-IB-7891                     TCGA-IB-8126 
"DEL PEAK 14(9Q22.33) WILD-TYPE" "DEL PEAK 14(9Q22.33) WILD-TYPE" 
                    TCGA-IB-8127                     TCGA-IB-A5SS 
"DEL PEAK 14(9Q22.33) WILD-TYPE" "DEL PEAK 14(9Q22.33) WILD-TYPE" 
D32V10, continuous
[1] "Remove cluster labels:"       "DEL PEAK 14(9Q22.33) MUTATED"
clus
  DEL PEAK 14(9Q22.33) MUTATED DEL PEAK 14(9Q22.33) WILD-TYPE 
                             2                              9 
                    TCGA-FB-A4P5                     TCGA-IB-7644 
"DEL PEAK 14(9Q22.33) WILD-TYPE" "DEL PEAK 14(9Q22.33) WILD-TYPE" 
                    TCGA-IB-7651                     TCGA-IB-7885 
"DEL PEAK 14(9Q22.33) WILD-TYPE" "DEL PEAK 14(9Q22.33) WILD-TYPE" 
                    TCGA-IB-7886                     TCGA-IB-7891 
"DEL PEAK 14(9Q22.33) WILD-TYPE" "DEL PEAK 14(9Q22.33) WILD-TYPE" 
                    TCGA-IB-8126                     TCGA-IB-8127 
"DEL PEAK 14(9Q22.33) WILD-TYPE" "DEL PEAK 14(9Q22.33) WILD-TYPE" 
                    TCGA-IB-A5SS 
"DEL PEAK 14(9Q22.33) WILD-TYPE" 
                                vv
clus                             R0 R1 RX
  DEL PEAK 14(9Q22.33) MUTATED    7  6  0
  DEL PEAK 14(9Q22.33) WILD-TYPE 25 15  2
D32V11, multiclass
    clus
vv   DEL PEAK 14(9Q22.33) MUTATED DEL PEAK 14(9Q22.33) WILD-TYPE
  R0                            7                             25
  R1                            6                             15
  RX                            0                              2
D32V12, continuous

Clustering(33) Variable = DEL PEAK 15(10Q23.2) MUTATION ANALYSIS
D33V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 15(10Q23.2) MUTATED    5  5
  DEL PEAK 15(10Q23.2) WILD-TYPE 30 14
  DEL PEAK 15(10Q23.2) MUTATED DEL PEAK 15(10Q23.2) WILD-TYPE 
                            10                             44 
  DEL PEAK 15(10Q23.2) MUTATED DEL PEAK 15(10Q23.2) WILD-TYPE 
                             5                             14 
$`DEL PEAK 15(10Q23.2) MUTATED`
TCGA-FB-A545 TCGA-H6-8124 TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-8005 TCGA-IB-7646 
        0.03        12.89         7.86         0.92         3.91         4.77 
TCGA-IB-7885 TCGA-IB-7887 TCGA-IB-7890 TCGA-IB-7893 
       27.98         3.58        19.66         3.85 

$`DEL PEAK 15(10Q23.2) WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.96        11.84         7.07         5.03         5.19 
TCGA-FB-A4P5 TCGA-H6-A45N TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 
        0.13         7.63         0.66         0.13         0.26        12.13 
TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8315 
       12.03         0.26         0.62         0.99         0.69         0.92 
TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H 
        0.49         0.10         0.16         2.96         0.76         1.02 
TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7647 TCGA-IB-7649 
        5.98         1.51        11.41        49.38        21.86        15.35 
TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7886 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7891 
       19.82        15.65         4.04        43.79        15.78        16.04 
TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ 
       15.95         0.56        17.13        10.82         9.83         7.20 
TCGA-IB-A5SS TCGA-IB-A5ST 
       15.12         0.26 

  DEL PEAK 15(10Q23.2) MUTATED DEL PEAK 15(10Q23.2) WILD-TYPE 
                          0.03                           0.10 
  DEL PEAK 15(10Q23.2) MUTATED DEL PEAK 15(10Q23.2) WILD-TYPE 
                         27.98                          49.38 
  DEL PEAK 15(10Q23.2) MUTATED DEL PEAK 15(10Q23.2) WILD-TYPE 
                         4.340                          6.525 
[1] "0.0 - 28.0 (4.3)" "0.1 - 49.4 (6.5)"
                    TCGA-F2-6879                     TCGA-F2-6880 
"DEL PEAK 15(10Q23.2) WILD-TYPE" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"DEL PEAK 15(10Q23.2) WILD-TYPE" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
"DEL PEAK 15(10Q23.2) WILD-TYPE" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"DEL PEAK 15(10Q23.2) WILD-TYPE"   "DEL PEAK 15(10Q23.2) MUTATED" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
  "DEL PEAK 15(10Q23.2) MUTATED" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-HZ-7289                     TCGA-HZ-7918 
  "DEL PEAK 15(10Q23.2) MUTATED"   "DEL PEAK 15(10Q23.2) MUTATED" 
                    TCGA-HZ-7919                     TCGA-HZ-7922 
"DEL PEAK 15(10Q23.2) WILD-TYPE" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-HZ-7923                     TCGA-HZ-7924 
"DEL PEAK 15(10Q23.2) WILD-TYPE" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-HZ-7925                     TCGA-HZ-7926 
"DEL PEAK 15(10Q23.2) WILD-TYPE" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-HZ-8001                     TCGA-HZ-8002 
"DEL PEAK 15(10Q23.2) WILD-TYPE" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-HZ-8003                     TCGA-HZ-8005 
"DEL PEAK 15(10Q23.2) WILD-TYPE"   "DEL PEAK 15(10Q23.2) MUTATED" 
                    TCGA-HZ-8315                     TCGA-HZ-8317 
"DEL PEAK 15(10Q23.2) WILD-TYPE" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-HZ-8519                     TCGA-HZ-8636 
"DEL PEAK 15(10Q23.2) WILD-TYPE" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-HZ-8638                     TCGA-HZ-A49G 
"DEL PEAK 15(10Q23.2) WILD-TYPE" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-HZ-A49H                     TCGA-HZ-A4BH 
"DEL PEAK 15(10Q23.2) WILD-TYPE" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-HZ-A4BK                     TCGA-IB-7644 
"DEL PEAK 15(10Q23.2) WILD-TYPE" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-IB-7645                     TCGA-IB-7646 
"DEL PEAK 15(10Q23.2) WILD-TYPE"   "DEL PEAK 15(10Q23.2) MUTATED" 
                    TCGA-IB-7647                     TCGA-IB-7649 
"DEL PEAK 15(10Q23.2) WILD-TYPE" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-IB-7651                     TCGA-IB-7652 
"DEL PEAK 15(10Q23.2) WILD-TYPE" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-IB-7885                     TCGA-IB-7886 
  "DEL PEAK 15(10Q23.2) MUTATED" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-IB-7887                     TCGA-IB-7888 
  "DEL PEAK 15(10Q23.2) MUTATED" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-IB-7889                     TCGA-IB-7890 
"DEL PEAK 15(10Q23.2) WILD-TYPE"   "DEL PEAK 15(10Q23.2) MUTATED" 
                    TCGA-IB-7891                     TCGA-IB-7893 
"DEL PEAK 15(10Q23.2) WILD-TYPE"   "DEL PEAK 15(10Q23.2) MUTATED" 
                    TCGA-IB-7897                     TCGA-IB-8126 
"DEL PEAK 15(10Q23.2) WILD-TYPE" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-IB-8127                     TCGA-IB-A5SO 
"DEL PEAK 15(10Q23.2) WILD-TYPE" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-IB-A5SP                     TCGA-IB-A5SQ 
"DEL PEAK 15(10Q23.2) WILD-TYPE" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-IB-A5SS                     TCGA-IB-A5ST 
"DEL PEAK 15(10Q23.2) WILD-TYPE" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-F2-6879                     TCGA-F2-6880 
"DEL PEAK 15(10Q23.2) WILD-TYPE" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"DEL PEAK 15(10Q23.2) WILD-TYPE" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
"DEL PEAK 15(10Q23.2) WILD-TYPE" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"DEL PEAK 15(10Q23.2) WILD-TYPE"   "DEL PEAK 15(10Q23.2) MUTATED" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
  "DEL PEAK 15(10Q23.2) MUTATED" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-HZ-7289                     TCGA-HZ-7918 
  "DEL PEAK 15(10Q23.2) MUTATED"   "DEL PEAK 15(10Q23.2) MUTATED" 
                    TCGA-HZ-7919                     TCGA-HZ-7922 
"DEL PEAK 15(10Q23.2) WILD-TYPE" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-HZ-7923                     TCGA-HZ-7924 
"DEL PEAK 15(10Q23.2) WILD-TYPE" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-HZ-7925                     TCGA-HZ-7926 
"DEL PEAK 15(10Q23.2) WILD-TYPE" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-HZ-8001                     TCGA-HZ-8002 
"DEL PEAK 15(10Q23.2) WILD-TYPE" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-HZ-8003                     TCGA-HZ-8005 
"DEL PEAK 15(10Q23.2) WILD-TYPE"   "DEL PEAK 15(10Q23.2) MUTATED" 
                    TCGA-HZ-8315                     TCGA-HZ-8317 
"DEL PEAK 15(10Q23.2) WILD-TYPE" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-HZ-8519                     TCGA-HZ-8636 
"DEL PEAK 15(10Q23.2) WILD-TYPE" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-HZ-8638                     TCGA-HZ-A49G 
"DEL PEAK 15(10Q23.2) WILD-TYPE" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-HZ-A49H                     TCGA-HZ-A4BH 
"DEL PEAK 15(10Q23.2) WILD-TYPE" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-HZ-A4BK                     TCGA-IB-7644 
"DEL PEAK 15(10Q23.2) WILD-TYPE" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-IB-7645                     TCGA-IB-7646 
"DEL PEAK 15(10Q23.2) WILD-TYPE"   "DEL PEAK 15(10Q23.2) MUTATED" 
                    TCGA-IB-7647                     TCGA-IB-7649 
"DEL PEAK 15(10Q23.2) WILD-TYPE" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-IB-7651                     TCGA-IB-7652 
"DEL PEAK 15(10Q23.2) WILD-TYPE" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-IB-7885                     TCGA-IB-7886 
  "DEL PEAK 15(10Q23.2) MUTATED" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-IB-7887                     TCGA-IB-7888 
  "DEL PEAK 15(10Q23.2) MUTATED" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-IB-7889                     TCGA-IB-7890 
"DEL PEAK 15(10Q23.2) WILD-TYPE"   "DEL PEAK 15(10Q23.2) MUTATED" 
                    TCGA-IB-7891                     TCGA-IB-7893 
"DEL PEAK 15(10Q23.2) WILD-TYPE"   "DEL PEAK 15(10Q23.2) MUTATED" 
                    TCGA-IB-7897                     TCGA-IB-8126 
"DEL PEAK 15(10Q23.2) WILD-TYPE" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-IB-8127                     TCGA-IB-A5SO 
"DEL PEAK 15(10Q23.2) WILD-TYPE" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-IB-A5SP                     TCGA-IB-A5SQ 
"DEL PEAK 15(10Q23.2) WILD-TYPE" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-IB-A5SS                     TCGA-IB-A5ST 
"DEL PEAK 15(10Q23.2) WILD-TYPE" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-F2-6879                     TCGA-F2-6880 
"DEL PEAK 15(10Q23.2) WILD-TYPE" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"DEL PEAK 15(10Q23.2) WILD-TYPE" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
"DEL PEAK 15(10Q23.2) WILD-TYPE" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"DEL PEAK 15(10Q23.2) WILD-TYPE"   "DEL PEAK 15(10Q23.2) MUTATED" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
  "DEL PEAK 15(10Q23.2) MUTATED" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-HZ-7289                     TCGA-HZ-7918 
  "DEL PEAK 15(10Q23.2) MUTATED"   "DEL PEAK 15(10Q23.2) MUTATED" 
                    TCGA-HZ-7919                     TCGA-HZ-7922 
"DEL PEAK 15(10Q23.2) WILD-TYPE" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-HZ-7923                     TCGA-HZ-7924 
"DEL PEAK 15(10Q23.2) WILD-TYPE" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-HZ-7925                     TCGA-HZ-7926 
"DEL PEAK 15(10Q23.2) WILD-TYPE" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-HZ-8001                     TCGA-HZ-8002 
"DEL PEAK 15(10Q23.2) WILD-TYPE" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-HZ-8003                     TCGA-HZ-8005 
"DEL PEAK 15(10Q23.2) WILD-TYPE"   "DEL PEAK 15(10Q23.2) MUTATED" 
                    TCGA-HZ-8315                     TCGA-HZ-8317 
"DEL PEAK 15(10Q23.2) WILD-TYPE" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-HZ-8519                     TCGA-HZ-8636 
"DEL PEAK 15(10Q23.2) WILD-TYPE" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-HZ-8638                     TCGA-HZ-A49G 
"DEL PEAK 15(10Q23.2) WILD-TYPE" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-HZ-A49H                     TCGA-HZ-A4BH 
"DEL PEAK 15(10Q23.2) WILD-TYPE" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-HZ-A4BK                     TCGA-IB-7644 
"DEL PEAK 15(10Q23.2) WILD-TYPE" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-IB-7645                     TCGA-IB-7646 
"DEL PEAK 15(10Q23.2) WILD-TYPE"   "DEL PEAK 15(10Q23.2) MUTATED" 
                    TCGA-IB-7647                     TCGA-IB-7649 
"DEL PEAK 15(10Q23.2) WILD-TYPE" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-IB-7651                     TCGA-IB-7652 
"DEL PEAK 15(10Q23.2) WILD-TYPE" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-IB-7885                     TCGA-IB-7886 
  "DEL PEAK 15(10Q23.2) MUTATED" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-IB-7887                     TCGA-IB-7888 
  "DEL PEAK 15(10Q23.2) MUTATED" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-IB-7889                     TCGA-IB-7890 
"DEL PEAK 15(10Q23.2) WILD-TYPE"   "DEL PEAK 15(10Q23.2) MUTATED" 
                    TCGA-IB-7891                     TCGA-IB-7893 
"DEL PEAK 15(10Q23.2) WILD-TYPE"   "DEL PEAK 15(10Q23.2) MUTATED" 
                    TCGA-IB-7897                     TCGA-IB-8126 
"DEL PEAK 15(10Q23.2) WILD-TYPE" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-IB-8127                     TCGA-IB-A5SO 
"DEL PEAK 15(10Q23.2) WILD-TYPE" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-IB-A5SP                     TCGA-IB-A5SQ 
"DEL PEAK 15(10Q23.2) WILD-TYPE" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-IB-A5SS                     TCGA-IB-A5ST 
"DEL PEAK 15(10Q23.2) WILD-TYPE" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
[1] "hr=" "1.7"
D33V2, continuous
                                vv
clus                             STAGE IA STAGE IB STAGE IIA STAGE IIB
  DEL PEAK 15(10Q23.2) MUTATED          0        1         1         8
  DEL PEAK 15(10Q23.2) WILD-TYPE        2        2         6        33
                                vv
clus                             STAGE III STAGE IV
  DEL PEAK 15(10Q23.2) MUTATED           0        0
  DEL PEAK 15(10Q23.2) WILD-TYPE         2        2
D33V3, multiclass
                                vv
clus                             T1+T2 T3+T4
  DEL PEAK 15(10Q23.2) MUTATED       1     9
  DEL PEAK 15(10Q23.2) WILD-TYPE     5    42
D33V4, multiclass
       clus
vv      DEL PEAK 15(10Q23.2) MUTATED DEL PEAK 15(10Q23.2) WILD-TYPE
  T1+T2                            1                              5
  T3+T4                            9                             42
D33V5, binary
                                cls
clus                              0  1
  DEL PEAK 15(10Q23.2) MUTATED    2  8
  DEL PEAK 15(10Q23.2) WILD-TYPE 12 35
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 15(10Q23.2) MUTATED      2    8
  DEL PEAK 15(10Q23.2) WILD-TYPE   12   35
   clus
vv  DEL PEAK 15(10Q23.2) MUTATED DEL PEAK 15(10Q23.2) WILD-TYPE
  0                            2                             12
  1                            8                             35
                                vv
clus                             M0 M1 MX
  DEL PEAK 15(10Q23.2) MUTATED    8  0  2
  DEL PEAK 15(10Q23.2) WILD-TYPE 24  2 21
D33V6, multiclass
    clus
vv   DEL PEAK 15(10Q23.2) MUTATED DEL PEAK 15(10Q23.2) WILD-TYPE
  M0                            8                             24
  M1                            0                              2
  MX                            2                             21
D33V7, binary
                                cls
clus                              0  1
  DEL PEAK 15(10Q23.2) MUTATED    4  6
  DEL PEAK 15(10Q23.2) WILD-TYPE 27 20
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 15(10Q23.2) MUTATED      4    6
  DEL PEAK 15(10Q23.2) WILD-TYPE   27   20
        clus
vv       DEL PEAK 15(10Q23.2) MUTATED DEL PEAK 15(10Q23.2) WILD-TYPE
  FEMALE                            4                             27
  MALE                              6                             20
                                vv
clus                             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  DEL PEAK 15(10Q23.2) MUTATED                                     9
  DEL PEAK 15(10Q23.2) WILD-TYPE                                  42
                                vv
clus                             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  DEL PEAK 15(10Q23.2) MUTATED                                       1
  DEL PEAK 15(10Q23.2) WILD-TYPE                                     3
                                vv
clus                             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  DEL PEAK 15(10Q23.2) MUTATED                                                  0
  DEL PEAK 15(10Q23.2) WILD-TYPE                                                1
D33V8, multiclass
                                                  clus
vv                                                 DEL PEAK 15(10Q23.2) MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                         9
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                       1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                            0
                                                  clus
vv                                                 DEL PEAK 15(10Q23.2) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                          42
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                         3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                              1
D33V9, continuous
D33V10, continuous
[1] "Remove cluster labels:"       "DEL PEAK 15(10Q23.2) MUTATED"
clus
  DEL PEAK 15(10Q23.2) MUTATED DEL PEAK 15(10Q23.2) WILD-TYPE 
                             2                              9 
                    TCGA-FB-A4P5                     TCGA-IB-7644 
"DEL PEAK 15(10Q23.2) WILD-TYPE" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-IB-7649                     TCGA-IB-7651 
"DEL PEAK 15(10Q23.2) WILD-TYPE" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-IB-7886                     TCGA-IB-7891 
"DEL PEAK 15(10Q23.2) WILD-TYPE" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-IB-8126                     TCGA-IB-8127 
"DEL PEAK 15(10Q23.2) WILD-TYPE" "DEL PEAK 15(10Q23.2) WILD-TYPE" 
                    TCGA-IB-A5SS 
"DEL PEAK 15(10Q23.2) WILD-TYPE" 
                                vv
clus                             R0 R1 RX
  DEL PEAK 15(10Q23.2) MUTATED    5  3  1
  DEL PEAK 15(10Q23.2) WILD-TYPE 27 18  1
D33V11, multiclass
    clus
vv   DEL PEAK 15(10Q23.2) MUTATED DEL PEAK 15(10Q23.2) WILD-TYPE
  R0                            5                             27
  R1                            3                             18
  RX                            1                              1
D33V12, continuous

Clustering(34) Variable = DEL PEAK 16(11P15.4) MUTATION ANALYSIS
D34V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 16(11P15.4) MUTATED    7  4
  DEL PEAK 16(11P15.4) WILD-TYPE 28 15
  DEL PEAK 16(11P15.4) MUTATED DEL PEAK 16(11P15.4) WILD-TYPE 
                            11                             43 
  DEL PEAK 16(11P15.4) MUTATED DEL PEAK 16(11P15.4) WILD-TYPE 
                             4                             15 
$`DEL PEAK 16(11P15.4) MUTATED`
TCGA-F2-A44H TCGA-FB-A545 TCGA-HZ-7918 TCGA-HZ-A4BH TCGA-IB-7645 TCGA-IB-7652 
        5.19         0.03         0.92         5.98        49.38        15.65 
TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7889 TCGA-IB-8127 
       27.98         4.04         3.58        15.78        17.13 

$`DEL PEAK 16(11P15.4) WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-FB-A4P5 
       10.98         9.96        11.84         7.07         5.03         0.13 
TCGA-H6-8124 TCGA-H6-A45N TCGA-HZ-7289 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 
       12.89         7.63         7.86         0.66         0.13         0.26 
TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 
       12.13        12.03         0.26         0.62         0.99         0.69 
TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8636 TCGA-HZ-8638 
        3.91         0.92         0.49         0.10         0.16         2.96 
TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7646 TCGA-IB-7647 
        0.76         1.02         1.51        11.41         4.77        21.86 
TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7888 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 
       15.35        19.82        43.79        19.66        16.04         3.85 
TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS 
       15.95         0.56        10.82         9.83         7.20        15.12 
TCGA-IB-A5ST 
        0.26 

  DEL PEAK 16(11P15.4) MUTATED DEL PEAK 16(11P15.4) WILD-TYPE 
                          0.03                           0.10 
  DEL PEAK 16(11P15.4) MUTATED DEL PEAK 16(11P15.4) WILD-TYPE 
                         49.38                          43.79 
  DEL PEAK 16(11P15.4) MUTATED DEL PEAK 16(11P15.4) WILD-TYPE 
                          5.98                           5.03 
[1] "0.0 - 49.4 (6.0)" "0.1 - 43.8 (5.0)"
                    TCGA-F2-6879                     TCGA-F2-6880 
"DEL PEAK 16(11P15.4) WILD-TYPE" "DEL PEAK 16(11P15.4) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"DEL PEAK 16(11P15.4) WILD-TYPE" "DEL PEAK 16(11P15.4) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
"DEL PEAK 16(11P15.4) WILD-TYPE"   "DEL PEAK 16(11P15.4) MUTATED" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"DEL PEAK 16(11P15.4) WILD-TYPE"   "DEL PEAK 16(11P15.4) MUTATED" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
"DEL PEAK 16(11P15.4) WILD-TYPE" "DEL PEAK 16(11P15.4) WILD-TYPE" 
                    TCGA-HZ-7289                     TCGA-HZ-7918 
"DEL PEAK 16(11P15.4) WILD-TYPE"   "DEL PEAK 16(11P15.4) MUTATED" 
                    TCGA-HZ-7919                     TCGA-HZ-7922 
"DEL PEAK 16(11P15.4) WILD-TYPE" "DEL PEAK 16(11P15.4) WILD-TYPE" 
                    TCGA-HZ-7923                     TCGA-HZ-7924 
"DEL PEAK 16(11P15.4) WILD-TYPE" "DEL PEAK 16(11P15.4) WILD-TYPE" 
                    TCGA-HZ-7925                     TCGA-HZ-7926 
"DEL PEAK 16(11P15.4) WILD-TYPE" "DEL PEAK 16(11P15.4) WILD-TYPE" 
                    TCGA-HZ-8001                     TCGA-HZ-8002 
"DEL PEAK 16(11P15.4) WILD-TYPE" "DEL PEAK 16(11P15.4) WILD-TYPE" 
                    TCGA-HZ-8003                     TCGA-HZ-8005 
"DEL PEAK 16(11P15.4) WILD-TYPE" "DEL PEAK 16(11P15.4) WILD-TYPE" 
                    TCGA-HZ-8315                     TCGA-HZ-8317 
"DEL PEAK 16(11P15.4) WILD-TYPE" "DEL PEAK 16(11P15.4) WILD-TYPE" 
                    TCGA-HZ-8519                     TCGA-HZ-8636 
"DEL PEAK 16(11P15.4) WILD-TYPE" "DEL PEAK 16(11P15.4) WILD-TYPE" 
                    TCGA-HZ-8638                     TCGA-HZ-A49G 
"DEL PEAK 16(11P15.4) WILD-TYPE" "DEL PEAK 16(11P15.4) WILD-TYPE" 
                    TCGA-HZ-A49H                     TCGA-HZ-A4BH 
"DEL PEAK 16(11P15.4) WILD-TYPE"   "DEL PEAK 16(11P15.4) MUTATED" 
                    TCGA-HZ-A4BK                     TCGA-IB-7644 
"DEL PEAK 16(11P15.4) WILD-TYPE" "DEL PEAK 16(11P15.4) WILD-TYPE" 
                    TCGA-IB-7645                     TCGA-IB-7646 
  "DEL PEAK 16(11P15.4) MUTATED" "DEL PEAK 16(11P15.4) WILD-TYPE" 
                    TCGA-IB-7647                     TCGA-IB-7649 
"DEL PEAK 16(11P15.4) WILD-TYPE" "DEL PEAK 16(11P15.4) WILD-TYPE" 
                    TCGA-IB-7651                     TCGA-IB-7652 
"DEL PEAK 16(11P15.4) WILD-TYPE"   "DEL PEAK 16(11P15.4) MUTATED" 
                    TCGA-IB-7885                     TCGA-IB-7886 
  "DEL PEAK 16(11P15.4) MUTATED"   "DEL PEAK 16(11P15.4) MUTATED" 
                    TCGA-IB-7887                     TCGA-IB-7888 
  "DEL PEAK 16(11P15.4) MUTATED" "DEL PEAK 16(11P15.4) WILD-TYPE" 
                    TCGA-IB-7889                     TCGA-IB-7890 
  "DEL PEAK 16(11P15.4) MUTATED" "DEL PEAK 16(11P15.4) WILD-TYPE" 
                    TCGA-IB-7891                     TCGA-IB-7893 
"DEL PEAK 16(11P15.4) WILD-TYPE" "DEL PEAK 16(11P15.4) WILD-TYPE" 
                    TCGA-IB-7897                     TCGA-IB-8126 
"DEL PEAK 16(11P15.4) WILD-TYPE" "DEL PEAK 16(11P15.4) WILD-TYPE" 
                    TCGA-IB-8127                     TCGA-IB-A5SO 
  "DEL PEAK 16(11P15.4) MUTATED" "DEL PEAK 16(11P15.4) WILD-TYPE" 
                    TCGA-IB-A5SP                     TCGA-IB-A5SQ 
"DEL PEAK 16(11P15.4) WILD-TYPE" "DEL PEAK 16(11P15.4) WILD-TYPE" 
                    TCGA-IB-A5SS                     TCGA-IB-A5ST 
"DEL PEAK 16(11P15.4) WILD-TYPE" "DEL PEAK 16(11P15.4) WILD-TYPE" 
                    TCGA-F2-6879                     TCGA-F2-6880 
"DEL PEAK 16(11P15.4) WILD-TYPE" "DEL PEAK 16(11P15.4) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"DEL PEAK 16(11P15.4) WILD-TYPE" "DEL PEAK 16(11P15.4) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
"DEL PEAK 16(11P15.4) WILD-TYPE"   "DEL PEAK 16(11P15.4) MUTATED" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"DEL PEAK 16(11P15.4) WILD-TYPE"   "DEL PEAK 16(11P15.4) MUTATED" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
"DEL PEAK 16(11P15.4) WILD-TYPE" "DEL PEAK 16(11P15.4) WILD-TYPE" 
                    TCGA-HZ-7289                     TCGA-HZ-7918 
"DEL PEAK 16(11P15.4) WILD-TYPE"   "DEL PEAK 16(11P15.4) MUTATED" 
                    TCGA-HZ-7919                     TCGA-HZ-7922 
"DEL PEAK 16(11P15.4) WILD-TYPE" "DEL PEAK 16(11P15.4) WILD-TYPE" 
                    TCGA-HZ-7923                     TCGA-HZ-7924 
"DEL PEAK 16(11P15.4) WILD-TYPE" "DEL PEAK 16(11P15.4) WILD-TYPE" 
                    TCGA-HZ-7925                     TCGA-HZ-7926 
"DEL PEAK 16(11P15.4) WILD-TYPE" "DEL PEAK 16(11P15.4) WILD-TYPE" 
                    TCGA-HZ-8001                     TCGA-HZ-8002 
"DEL PEAK 16(11P15.4) WILD-TYPE" "DEL PEAK 16(11P15.4) WILD-TYPE" 
                    TCGA-HZ-8003                     TCGA-HZ-8005 
"DEL PEAK 16(11P15.4) WILD-TYPE" "DEL PEAK 16(11P15.4) WILD-TYPE" 
                    TCGA-HZ-8315                     TCGA-HZ-8317 
"DEL PEAK 16(11P15.4) WILD-TYPE" "DEL PEAK 16(11P15.4) WILD-TYPE" 
                    TCGA-HZ-8519                     TCGA-HZ-8636 
"DEL PEAK 16(11P15.4) WILD-TYPE" "DEL PEAK 16(11P15.4) WILD-TYPE" 
                    TCGA-HZ-8638                     TCGA-HZ-A49G 
"DEL PEAK 16(11P15.4) WILD-TYPE" "DEL PEAK 16(11P15.4) WILD-TYPE" 
                    TCGA-HZ-A49H                     TCGA-HZ-A4BH 
"DEL PEAK 16(11P15.4) WILD-TYPE"   "DEL PEAK 16(11P15.4) MUTATED" 
                    TCGA-HZ-A4BK                     TCGA-IB-7644 
"DEL PEAK 16(11P15.4) WILD-TYPE" "DEL PEAK 16(11P15.4) WILD-TYPE" 
                    TCGA-IB-7645                     TCGA-IB-7646 
  "DEL PEAK 16(11P15.4) MUTATED" "DEL PEAK 16(11P15.4) WILD-TYPE" 
                    TCGA-IB-7647                     TCGA-IB-7649 
"DEL PEAK 16(11P15.4) WILD-TYPE" "DEL PEAK 16(11P15.4) WILD-TYPE" 
                    TCGA-IB-7651                     TCGA-IB-7652 
"DEL PEAK 16(11P15.4) WILD-TYPE"   "DEL PEAK 16(11P15.4) MUTATED" 
                    TCGA-IB-7885                     TCGA-IB-7886 
  "DEL PEAK 16(11P15.4) MUTATED"   "DEL PEAK 16(11P15.4) MUTATED" 
                    TCGA-IB-7887                     TCGA-IB-7888 
  "DEL PEAK 16(11P15.4) MUTATED" "DEL PEAK 16(11P15.4) WILD-TYPE" 
                    TCGA-IB-7889                     TCGA-IB-7890 
  "DEL PEAK 16(11P15.4) MUTATED" "DEL PEAK 16(11P15.4) WILD-TYPE" 
                    TCGA-IB-7891                     TCGA-IB-7893 
"DEL PEAK 16(11P15.4) WILD-TYPE" "DEL PEAK 16(11P15.4) WILD-TYPE" 
                    TCGA-IB-7897                     TCGA-IB-8126 
"DEL PEAK 16(11P15.4) WILD-TYPE" "DEL PEAK 16(11P15.4) WILD-TYPE" 
                    TCGA-IB-8127                     TCGA-IB-A5SO 
  "DEL PEAK 16(11P15.4) MUTATED" "DEL PEAK 16(11P15.4) WILD-TYPE" 
                    TCGA-IB-A5SP                     TCGA-IB-A5SQ 
"DEL PEAK 16(11P15.4) WILD-TYPE" "DEL PEAK 16(11P15.4) WILD-TYPE" 
                    TCGA-IB-A5SS                     TCGA-IB-A5ST 
"DEL PEAK 16(11P15.4) WILD-TYPE" "DEL PEAK 16(11P15.4) WILD-TYPE" 
                    TCGA-F2-6879                     TCGA-F2-6880 
"DEL PEAK 16(11P15.4) WILD-TYPE" "DEL PEAK 16(11P15.4) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"DEL PEAK 16(11P15.4) WILD-TYPE" "DEL PEAK 16(11P15.4) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
"DEL PEAK 16(11P15.4) WILD-TYPE"   "DEL PEAK 16(11P15.4) MUTATED" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"DEL PEAK 16(11P15.4) WILD-TYPE"   "DEL PEAK 16(11P15.4) MUTATED" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
"DEL PEAK 16(11P15.4) WILD-TYPE" "DEL PEAK 16(11P15.4) WILD-TYPE" 
                    TCGA-HZ-7289                     TCGA-HZ-7918 
"DEL PEAK 16(11P15.4) WILD-TYPE"   "DEL PEAK 16(11P15.4) MUTATED" 
                    TCGA-HZ-7919                     TCGA-HZ-7922 
"DEL PEAK 16(11P15.4) WILD-TYPE" "DEL PEAK 16(11P15.4) WILD-TYPE" 
                    TCGA-HZ-7923                     TCGA-HZ-7924 
"DEL PEAK 16(11P15.4) WILD-TYPE" "DEL PEAK 16(11P15.4) WILD-TYPE" 
                    TCGA-HZ-7925                     TCGA-HZ-7926 
"DEL PEAK 16(11P15.4) WILD-TYPE" "DEL PEAK 16(11P15.4) WILD-TYPE" 
                    TCGA-HZ-8001                     TCGA-HZ-8002 
"DEL PEAK 16(11P15.4) WILD-TYPE" "DEL PEAK 16(11P15.4) WILD-TYPE" 
                    TCGA-HZ-8003                     TCGA-HZ-8005 
"DEL PEAK 16(11P15.4) WILD-TYPE" "DEL PEAK 16(11P15.4) WILD-TYPE" 
                    TCGA-HZ-8315                     TCGA-HZ-8317 
"DEL PEAK 16(11P15.4) WILD-TYPE" "DEL PEAK 16(11P15.4) WILD-TYPE" 
                    TCGA-HZ-8519                     TCGA-HZ-8636 
"DEL PEAK 16(11P15.4) WILD-TYPE" "DEL PEAK 16(11P15.4) WILD-TYPE" 
                    TCGA-HZ-8638                     TCGA-HZ-A49G 
"DEL PEAK 16(11P15.4) WILD-TYPE" "DEL PEAK 16(11P15.4) WILD-TYPE" 
                    TCGA-HZ-A49H                     TCGA-HZ-A4BH 
"DEL PEAK 16(11P15.4) WILD-TYPE"   "DEL PEAK 16(11P15.4) MUTATED" 
                    TCGA-HZ-A4BK                     TCGA-IB-7644 
"DEL PEAK 16(11P15.4) WILD-TYPE" "DEL PEAK 16(11P15.4) WILD-TYPE" 
                    TCGA-IB-7645                     TCGA-IB-7646 
  "DEL PEAK 16(11P15.4) MUTATED" "DEL PEAK 16(11P15.4) WILD-TYPE" 
                    TCGA-IB-7647                     TCGA-IB-7649 
"DEL PEAK 16(11P15.4) WILD-TYPE" "DEL PEAK 16(11P15.4) WILD-TYPE" 
                    TCGA-IB-7651                     TCGA-IB-7652 
"DEL PEAK 16(11P15.4) WILD-TYPE"   "DEL PEAK 16(11P15.4) MUTATED" 
                    TCGA-IB-7885                     TCGA-IB-7886 
  "DEL PEAK 16(11P15.4) MUTATED"   "DEL PEAK 16(11P15.4) MUTATED" 
                    TCGA-IB-7887                     TCGA-IB-7888 
  "DEL PEAK 16(11P15.4) MUTATED" "DEL PEAK 16(11P15.4) WILD-TYPE" 
                    TCGA-IB-7889                     TCGA-IB-7890 
  "DEL PEAK 16(11P15.4) MUTATED" "DEL PEAK 16(11P15.4) WILD-TYPE" 
                    TCGA-IB-7891                     TCGA-IB-7893 
"DEL PEAK 16(11P15.4) WILD-TYPE" "DEL PEAK 16(11P15.4) WILD-TYPE" 
                    TCGA-IB-7897                     TCGA-IB-8126 
"DEL PEAK 16(11P15.4) WILD-TYPE" "DEL PEAK 16(11P15.4) WILD-TYPE" 
                    TCGA-IB-8127                     TCGA-IB-A5SO 
  "DEL PEAK 16(11P15.4) MUTATED" "DEL PEAK 16(11P15.4) WILD-TYPE" 
                    TCGA-IB-A5SP                     TCGA-IB-A5SQ 
"DEL PEAK 16(11P15.4) WILD-TYPE" "DEL PEAK 16(11P15.4) WILD-TYPE" 
                    TCGA-IB-A5SS                     TCGA-IB-A5ST 
"DEL PEAK 16(11P15.4) WILD-TYPE" "DEL PEAK 16(11P15.4) WILD-TYPE" 
[1] "hr=" "2.4"
D34V2, continuous
                                vv
clus                             STAGE IA STAGE IB STAGE IIA STAGE IIB
  DEL PEAK 16(11P15.4) MUTATED          0        0         1        10
  DEL PEAK 16(11P15.4) WILD-TYPE        2        3         6        31
                                vv
clus                             STAGE III STAGE IV
  DEL PEAK 16(11P15.4) MUTATED           0        0
  DEL PEAK 16(11P15.4) WILD-TYPE         2        2
D34V3, multiclass
                                vv
clus                             T1+T2 T3+T4
  DEL PEAK 16(11P15.4) MUTATED       0    11
  DEL PEAK 16(11P15.4) WILD-TYPE     6    40
D34V4, multiclass
       clus
vv      DEL PEAK 16(11P15.4) MUTATED DEL PEAK 16(11P15.4) WILD-TYPE
  T1+T2                            0                              6
  T3+T4                           11                             40
D34V5, binary
                                cls
clus                              0  1
  DEL PEAK 16(11P15.4) MUTATED    1 10
  DEL PEAK 16(11P15.4) WILD-TYPE 13 33
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 16(11P15.4) MUTATED      1   10
  DEL PEAK 16(11P15.4) WILD-TYPE   13   33
   clus
vv  DEL PEAK 16(11P15.4) MUTATED DEL PEAK 16(11P15.4) WILD-TYPE
  0                            1                             13
  1                           10                             33
                                vv
clus                             M0 M1 MX
  DEL PEAK 16(11P15.4) MUTATED   10  0  1
  DEL PEAK 16(11P15.4) WILD-TYPE 22  2 22
D34V6, multiclass
    clus
vv   DEL PEAK 16(11P15.4) MUTATED DEL PEAK 16(11P15.4) WILD-TYPE
  M0                           10                             22
  M1                            0                              2
  MX                            1                             22
D34V7, binary
                                cls
clus                              0  1
  DEL PEAK 16(11P15.4) MUTATED    6  5
  DEL PEAK 16(11P15.4) WILD-TYPE 25 21
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 16(11P15.4) MUTATED      6    5
  DEL PEAK 16(11P15.4) WILD-TYPE   25   21
        clus
vv       DEL PEAK 16(11P15.4) MUTATED DEL PEAK 16(11P15.4) WILD-TYPE
  FEMALE                            6                             25
  MALE                              5                             21
                                vv
clus                             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  DEL PEAK 16(11P15.4) MUTATED                                    11
  DEL PEAK 16(11P15.4) WILD-TYPE                                  40
                                vv
clus                             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  DEL PEAK 16(11P15.4) MUTATED                                       0
  DEL PEAK 16(11P15.4) WILD-TYPE                                     4
                                vv
clus                             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  DEL PEAK 16(11P15.4) MUTATED                                                  0
  DEL PEAK 16(11P15.4) WILD-TYPE                                                1
D34V8, multiclass
                                                  clus
vv                                                 DEL PEAK 16(11P15.4) MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                        11
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                       0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                            0
                                                  clus
vv                                                 DEL PEAK 16(11P15.4) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                          40
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                         4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                              1
D34V9, continuous
D34V10, continuous
                                vv
clus                             R0 R1 RX
  DEL PEAK 16(11P15.4) MUTATED    5  5  0
  DEL PEAK 16(11P15.4) WILD-TYPE 27 16  2
D34V11, multiclass
    clus
vv   DEL PEAK 16(11P15.4) MUTATED DEL PEAK 16(11P15.4) WILD-TYPE
  R0                            5                             27
  R1                            5                             16
  RX                            0                              2
D34V12, continuous

Clustering(35) Variable = DEL PEAK 17(12P12.1) MUTATION ANALYSIS
D35V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 17(12P12.1) MUTATED    4  2
  DEL PEAK 17(12P12.1) WILD-TYPE 31 17
  DEL PEAK 17(12P12.1) MUTATED DEL PEAK 17(12P12.1) WILD-TYPE 
                             6                             48 
  DEL PEAK 17(12P12.1) MUTATED DEL PEAK 17(12P12.1) WILD-TYPE 
                             2                             17 
$`DEL PEAK 17(12P12.1) MUTATED`
TCGA-F2-6879 TCGA-HZ-7289 TCGA-HZ-7919 TCGA-HZ-A4BH TCGA-IB-7893 TCGA-IB-A5SP 
       10.98         7.86         0.66         5.98         3.85         9.83 

$`DEL PEAK 17(12P12.1) WILD-TYPE`
TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A4P5 
        9.96        11.84         7.07         5.03         5.19         0.13 
TCGA-FB-A545 TCGA-H6-8124 TCGA-H6-A45N TCGA-HZ-7918 TCGA-HZ-7922 TCGA-HZ-7923 
        0.03        12.89         7.63         0.92         0.13         0.26 
TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 
       12.13        12.03         0.26         0.62         0.99         0.69 
TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8636 TCGA-HZ-8638 
        3.91         0.92         0.49         0.10         0.16         2.96 
TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 
        0.76         1.02         1.51        11.41        49.38         4.77 
TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 
       21.86        15.35        19.82        15.65        27.98         4.04 
TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7897 
        3.58        43.79        15.78        19.66        16.04        15.95 
TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST 
        0.56        17.13        10.82         7.20        15.12         0.26 

  DEL PEAK 17(12P12.1) MUTATED DEL PEAK 17(12P12.1) WILD-TYPE 
                          0.66                           0.03 
  DEL PEAK 17(12P12.1) MUTATED DEL PEAK 17(12P12.1) WILD-TYPE 
                         10.98                          49.38 
  DEL PEAK 17(12P12.1) MUTATED DEL PEAK 17(12P12.1) WILD-TYPE 
                          6.92                           5.11 
[1] "0.7 - 11.0 (6.9)" "0.0 - 49.4 (5.1)"
                    TCGA-F2-6879                     TCGA-F2-6880 
  "DEL PEAK 17(12P12.1) MUTATED" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-HZ-7289                     TCGA-HZ-7918 
  "DEL PEAK 17(12P12.1) MUTATED" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-HZ-7919                     TCGA-HZ-7922 
  "DEL PEAK 17(12P12.1) MUTATED" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-HZ-7923                     TCGA-HZ-7924 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-HZ-7925                     TCGA-HZ-7926 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-HZ-8001                     TCGA-HZ-8002 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-HZ-8003                     TCGA-HZ-8005 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-HZ-8315                     TCGA-HZ-8317 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-HZ-8519                     TCGA-HZ-8636 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-HZ-8638                     TCGA-HZ-A49G 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-HZ-A49H                     TCGA-HZ-A4BH 
"DEL PEAK 17(12P12.1) WILD-TYPE"   "DEL PEAK 17(12P12.1) MUTATED" 
                    TCGA-HZ-A4BK                     TCGA-IB-7644 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-IB-7645                     TCGA-IB-7646 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-IB-7647                     TCGA-IB-7649 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-IB-7651                     TCGA-IB-7652 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-IB-7885                     TCGA-IB-7886 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-IB-7887                     TCGA-IB-7888 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-IB-7889                     TCGA-IB-7890 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-IB-7891                     TCGA-IB-7893 
"DEL PEAK 17(12P12.1) WILD-TYPE"   "DEL PEAK 17(12P12.1) MUTATED" 
                    TCGA-IB-7897                     TCGA-IB-8126 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-IB-8127                     TCGA-IB-A5SO 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-IB-A5SP                     TCGA-IB-A5SQ 
  "DEL PEAK 17(12P12.1) MUTATED" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-IB-A5SS                     TCGA-IB-A5ST 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-F2-6879                     TCGA-F2-6880 
  "DEL PEAK 17(12P12.1) MUTATED" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-HZ-7289                     TCGA-HZ-7918 
  "DEL PEAK 17(12P12.1) MUTATED" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-HZ-7919                     TCGA-HZ-7922 
  "DEL PEAK 17(12P12.1) MUTATED" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-HZ-7923                     TCGA-HZ-7924 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-HZ-7925                     TCGA-HZ-7926 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-HZ-8001                     TCGA-HZ-8002 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-HZ-8003                     TCGA-HZ-8005 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-HZ-8315                     TCGA-HZ-8317 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-HZ-8519                     TCGA-HZ-8636 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-HZ-8638                     TCGA-HZ-A49G 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-HZ-A49H                     TCGA-HZ-A4BH 
"DEL PEAK 17(12P12.1) WILD-TYPE"   "DEL PEAK 17(12P12.1) MUTATED" 
                    TCGA-HZ-A4BK                     TCGA-IB-7644 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-IB-7645                     TCGA-IB-7646 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-IB-7647                     TCGA-IB-7649 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-IB-7651                     TCGA-IB-7652 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-IB-7885                     TCGA-IB-7886 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-IB-7887                     TCGA-IB-7888 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-IB-7889                     TCGA-IB-7890 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-IB-7891                     TCGA-IB-7893 
"DEL PEAK 17(12P12.1) WILD-TYPE"   "DEL PEAK 17(12P12.1) MUTATED" 
                    TCGA-IB-7897                     TCGA-IB-8126 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-IB-8127                     TCGA-IB-A5SO 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-IB-A5SP                     TCGA-IB-A5SQ 
  "DEL PEAK 17(12P12.1) MUTATED" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-IB-A5SS                     TCGA-IB-A5ST 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-F2-6879                     TCGA-F2-6880 
  "DEL PEAK 17(12P12.1) MUTATED" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-HZ-7289                     TCGA-HZ-7918 
  "DEL PEAK 17(12P12.1) MUTATED" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-HZ-7919                     TCGA-HZ-7922 
  "DEL PEAK 17(12P12.1) MUTATED" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-HZ-7923                     TCGA-HZ-7924 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-HZ-7925                     TCGA-HZ-7926 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-HZ-8001                     TCGA-HZ-8002 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-HZ-8003                     TCGA-HZ-8005 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-HZ-8315                     TCGA-HZ-8317 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-HZ-8519                     TCGA-HZ-8636 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-HZ-8638                     TCGA-HZ-A49G 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-HZ-A49H                     TCGA-HZ-A4BH 
"DEL PEAK 17(12P12.1) WILD-TYPE"   "DEL PEAK 17(12P12.1) MUTATED" 
                    TCGA-HZ-A4BK                     TCGA-IB-7644 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-IB-7645                     TCGA-IB-7646 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-IB-7647                     TCGA-IB-7649 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-IB-7651                     TCGA-IB-7652 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-IB-7885                     TCGA-IB-7886 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-IB-7887                     TCGA-IB-7888 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-IB-7889                     TCGA-IB-7890 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-IB-7891                     TCGA-IB-7893 
"DEL PEAK 17(12P12.1) WILD-TYPE"   "DEL PEAK 17(12P12.1) MUTATED" 
                    TCGA-IB-7897                     TCGA-IB-8126 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-IB-8127                     TCGA-IB-A5SO 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-IB-A5SP                     TCGA-IB-A5SQ 
  "DEL PEAK 17(12P12.1) MUTATED" "DEL PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-IB-A5SS                     TCGA-IB-A5ST 
"DEL PEAK 17(12P12.1) WILD-TYPE" "DEL PEAK 17(12P12.1) WILD-TYPE" 
[1] "hr=" "2.1"
D35V2, continuous
                                vv
clus                             STAGE IA STAGE IB STAGE IIA STAGE IIB
  DEL PEAK 17(12P12.1) MUTATED          0        0         2         5
  DEL PEAK 17(12P12.1) WILD-TYPE        2        3         5        36
                                vv
clus                             STAGE III STAGE IV
  DEL PEAK 17(12P12.1) MUTATED           0        0
  DEL PEAK 17(12P12.1) WILD-TYPE         2        2
D35V3, multiclass
                                vv
clus                             T1+T2 T3+T4
  DEL PEAK 17(12P12.1) MUTATED       0     7
  DEL PEAK 17(12P12.1) WILD-TYPE     6    44
D35V4, multiclass
       clus
vv      DEL PEAK 17(12P12.1) MUTATED DEL PEAK 17(12P12.1) WILD-TYPE
  T1+T2                            0                              6
  T3+T4                            7                             44
D35V5, binary
                                cls
clus                              0  1
  DEL PEAK 17(12P12.1) MUTATED    2  5
  DEL PEAK 17(12P12.1) WILD-TYPE 12 38
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 17(12P12.1) MUTATED      2    5
  DEL PEAK 17(12P12.1) WILD-TYPE   12   38
   clus
vv  DEL PEAK 17(12P12.1) MUTATED DEL PEAK 17(12P12.1) WILD-TYPE
  0                            2                             12
  1                            5                             38
                                vv
clus                             M0 M1 MX
  DEL PEAK 17(12P12.1) MUTATED    4  0  3
  DEL PEAK 17(12P12.1) WILD-TYPE 28  2 20
D35V6, multiclass
    clus
vv   DEL PEAK 17(12P12.1) MUTATED DEL PEAK 17(12P12.1) WILD-TYPE
  M0                            4                             28
  M1                            0                              2
  MX                            3                             20
D35V7, binary
                                cls
clus                              0  1
  DEL PEAK 17(12P12.1) MUTATED    1  6
  DEL PEAK 17(12P12.1) WILD-TYPE 30 20
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 17(12P12.1) MUTATED      1    6
  DEL PEAK 17(12P12.1) WILD-TYPE   30   20
        clus
vv       DEL PEAK 17(12P12.1) MUTATED DEL PEAK 17(12P12.1) WILD-TYPE
  FEMALE                            1                             30
  MALE                              6                             20
                                vv
clus                             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  DEL PEAK 17(12P12.1) MUTATED                                     5
  DEL PEAK 17(12P12.1) WILD-TYPE                                  46
                                vv
clus                             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  DEL PEAK 17(12P12.1) MUTATED                                       1
  DEL PEAK 17(12P12.1) WILD-TYPE                                     3
                                vv
clus                             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  DEL PEAK 17(12P12.1) MUTATED                                                  0
  DEL PEAK 17(12P12.1) WILD-TYPE                                                1
D35V8, multiclass
                                                  clus
vv                                                 DEL PEAK 17(12P12.1) MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                         5
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                       1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                            0
                                                  clus
vv                                                 DEL PEAK 17(12P12.1) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                          46
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                         3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                              1
D35V9, continuous
D35V10, continuous
                                vv
clus                             R0 R1 RX
  DEL PEAK 17(12P12.1) MUTATED    2  4  1
  DEL PEAK 17(12P12.1) WILD-TYPE 30 17  1
D35V11, multiclass
    clus
vv   DEL PEAK 17(12P12.1) MUTATED DEL PEAK 17(12P12.1) WILD-TYPE
  R0                            2                             30
  R1                            4                             17
  RX                            1                              1
D35V12, continuous

Clustering(36) Variable = DEL PEAK 18(12Q12) MUTATION ANALYSIS
D36V1, survival
                              sevent
clus2                           0  1
  DEL PEAK 18(12Q12) MUTATED    3  4
  DEL PEAK 18(12Q12) WILD-TYPE 32 15
  DEL PEAK 18(12Q12) MUTATED DEL PEAK 18(12Q12) WILD-TYPE 
                           7                           47 
  DEL PEAK 18(12Q12) MUTATED DEL PEAK 18(12Q12) WILD-TYPE 
                           4                           15 
$`DEL PEAK 18(12Q12) MUTATED`
TCGA-FB-A545 TCGA-H6-8124 TCGA-HZ-8636 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7890 
        0.03        12.89         0.16         4.04         3.58        19.66 
TCGA-IB-7893 
        3.85 

$`DEL PEAK 18(12Q12) WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.96        11.84         7.07         5.03         5.19 
TCGA-FB-A4P5 TCGA-H6-A45N TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 
        0.13         7.63         7.86         0.92         0.66         0.13 
TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 
        0.26        12.13        12.03         0.26         0.62         0.99 
TCGA-HZ-8003 TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8638 
        0.69         3.91         0.92         0.49         0.10         2.96 
TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 
        0.76         1.02         5.98         1.51        11.41        49.38 
TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 
        4.77        21.86        15.35        19.82        15.65        27.98 
TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7891 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 
       43.79        15.78        16.04        15.95         0.56        17.13 
TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST 
       10.82         9.83         7.20        15.12         0.26 

  DEL PEAK 18(12Q12) MUTATED DEL PEAK 18(12Q12) WILD-TYPE 
                        0.03                         0.10 
  DEL PEAK 18(12Q12) MUTATED DEL PEAK 18(12Q12) WILD-TYPE 
                       19.66                        49.38 
  DEL PEAK 18(12Q12) MUTATED DEL PEAK 18(12Q12) WILD-TYPE 
                        3.85                         7.07 
[1] "0.0 - 19.7 (3.9)" "0.1 - 49.4 (7.1)"
                  TCGA-F2-6879                   TCGA-F2-6880 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-F2-7273                   TCGA-F2-7276 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-F2-A44G                   TCGA-F2-A44H 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-FB-A4P5                   TCGA-FB-A545 
"DEL PEAK 18(12Q12) WILD-TYPE"   "DEL PEAK 18(12Q12) MUTATED" 
                  TCGA-H6-8124                   TCGA-H6-A45N 
  "DEL PEAK 18(12Q12) MUTATED" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-HZ-7289                   TCGA-HZ-7918 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-HZ-7919                   TCGA-HZ-7922 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-HZ-7923                   TCGA-HZ-7924 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-HZ-7925                   TCGA-HZ-7926 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-HZ-8001                   TCGA-HZ-8002 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-HZ-8003                   TCGA-HZ-8005 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-HZ-8315                   TCGA-HZ-8317 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-HZ-8519                   TCGA-HZ-8636 
"DEL PEAK 18(12Q12) WILD-TYPE"   "DEL PEAK 18(12Q12) MUTATED" 
                  TCGA-HZ-8638                   TCGA-HZ-A49G 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-HZ-A49H                   TCGA-HZ-A4BH 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-HZ-A4BK                   TCGA-IB-7644 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-IB-7645                   TCGA-IB-7646 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-IB-7647                   TCGA-IB-7649 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-IB-7651                   TCGA-IB-7652 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-IB-7885                   TCGA-IB-7886 
"DEL PEAK 18(12Q12) WILD-TYPE"   "DEL PEAK 18(12Q12) MUTATED" 
                  TCGA-IB-7887                   TCGA-IB-7888 
  "DEL PEAK 18(12Q12) MUTATED" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-IB-7889                   TCGA-IB-7890 
"DEL PEAK 18(12Q12) WILD-TYPE"   "DEL PEAK 18(12Q12) MUTATED" 
                  TCGA-IB-7891                   TCGA-IB-7893 
"DEL PEAK 18(12Q12) WILD-TYPE"   "DEL PEAK 18(12Q12) MUTATED" 
                  TCGA-IB-7897                   TCGA-IB-8126 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-IB-8127                   TCGA-IB-A5SO 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-IB-A5SP                   TCGA-IB-A5SQ 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-IB-A5SS                   TCGA-IB-A5ST 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-F2-6879                   TCGA-F2-6880 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-F2-7273                   TCGA-F2-7276 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-F2-A44G                   TCGA-F2-A44H 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-FB-A4P5                   TCGA-FB-A545 
"DEL PEAK 18(12Q12) WILD-TYPE"   "DEL PEAK 18(12Q12) MUTATED" 
                  TCGA-H6-8124                   TCGA-H6-A45N 
  "DEL PEAK 18(12Q12) MUTATED" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-HZ-7289                   TCGA-HZ-7918 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-HZ-7919                   TCGA-HZ-7922 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-HZ-7923                   TCGA-HZ-7924 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-HZ-7925                   TCGA-HZ-7926 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-HZ-8001                   TCGA-HZ-8002 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-HZ-8003                   TCGA-HZ-8005 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-HZ-8315                   TCGA-HZ-8317 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-HZ-8519                   TCGA-HZ-8636 
"DEL PEAK 18(12Q12) WILD-TYPE"   "DEL PEAK 18(12Q12) MUTATED" 
                  TCGA-HZ-8638                   TCGA-HZ-A49G 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-HZ-A49H                   TCGA-HZ-A4BH 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-HZ-A4BK                   TCGA-IB-7644 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-IB-7645                   TCGA-IB-7646 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-IB-7647                   TCGA-IB-7649 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-IB-7651                   TCGA-IB-7652 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-IB-7885                   TCGA-IB-7886 
"DEL PEAK 18(12Q12) WILD-TYPE"   "DEL PEAK 18(12Q12) MUTATED" 
                  TCGA-IB-7887                   TCGA-IB-7888 
  "DEL PEAK 18(12Q12) MUTATED" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-IB-7889                   TCGA-IB-7890 
"DEL PEAK 18(12Q12) WILD-TYPE"   "DEL PEAK 18(12Q12) MUTATED" 
                  TCGA-IB-7891                   TCGA-IB-7893 
"DEL PEAK 18(12Q12) WILD-TYPE"   "DEL PEAK 18(12Q12) MUTATED" 
                  TCGA-IB-7897                   TCGA-IB-8126 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-IB-8127                   TCGA-IB-A5SO 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-IB-A5SP                   TCGA-IB-A5SQ 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-IB-A5SS                   TCGA-IB-A5ST 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-F2-6879                   TCGA-F2-6880 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-F2-7273                   TCGA-F2-7276 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-F2-A44G                   TCGA-F2-A44H 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-FB-A4P5                   TCGA-FB-A545 
"DEL PEAK 18(12Q12) WILD-TYPE"   "DEL PEAK 18(12Q12) MUTATED" 
                  TCGA-H6-8124                   TCGA-H6-A45N 
  "DEL PEAK 18(12Q12) MUTATED" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-HZ-7289                   TCGA-HZ-7918 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-HZ-7919                   TCGA-HZ-7922 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-HZ-7923                   TCGA-HZ-7924 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-HZ-7925                   TCGA-HZ-7926 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-HZ-8001                   TCGA-HZ-8002 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-HZ-8003                   TCGA-HZ-8005 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-HZ-8315                   TCGA-HZ-8317 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-HZ-8519                   TCGA-HZ-8636 
"DEL PEAK 18(12Q12) WILD-TYPE"   "DEL PEAK 18(12Q12) MUTATED" 
                  TCGA-HZ-8638                   TCGA-HZ-A49G 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-HZ-A49H                   TCGA-HZ-A4BH 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-HZ-A4BK                   TCGA-IB-7644 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-IB-7645                   TCGA-IB-7646 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-IB-7647                   TCGA-IB-7649 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-IB-7651                   TCGA-IB-7652 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-IB-7885                   TCGA-IB-7886 
"DEL PEAK 18(12Q12) WILD-TYPE"   "DEL PEAK 18(12Q12) MUTATED" 
                  TCGA-IB-7887                   TCGA-IB-7888 
  "DEL PEAK 18(12Q12) MUTATED" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-IB-7889                   TCGA-IB-7890 
"DEL PEAK 18(12Q12) WILD-TYPE"   "DEL PEAK 18(12Q12) MUTATED" 
                  TCGA-IB-7891                   TCGA-IB-7893 
"DEL PEAK 18(12Q12) WILD-TYPE"   "DEL PEAK 18(12Q12) MUTATED" 
                  TCGA-IB-7897                   TCGA-IB-8126 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-IB-8127                   TCGA-IB-A5SO 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-IB-A5SP                   TCGA-IB-A5SQ 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-IB-A5SS                   TCGA-IB-A5ST 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
[1] "hr=" "3.3"
D36V2, continuous
                              vv
clus                           STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III
  DEL PEAK 18(12Q12) MUTATED          0        1         1         4         0
  DEL PEAK 18(12Q12) WILD-TYPE        2        2         6        37         2
                              vv
clus                           STAGE IV
  DEL PEAK 18(12Q12) MUTATED          1
  DEL PEAK 18(12Q12) WILD-TYPE        1
D36V3, multiclass
                              vv
clus                           T1+T2 T3+T4
  DEL PEAK 18(12Q12) MUTATED       1     6
  DEL PEAK 18(12Q12) WILD-TYPE     5    45
D36V4, multiclass
       clus
vv      DEL PEAK 18(12Q12) MUTATED DEL PEAK 18(12Q12) WILD-TYPE
  T1+T2                          1                            5
  T3+T4                          6                           45
D36V5, binary
                              cls
clus                            0  1
  DEL PEAK 18(12Q12) MUTATED    3  4
  DEL PEAK 18(12Q12) WILD-TYPE 11 39
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 18(12Q12) MUTATED      3    4
  DEL PEAK 18(12Q12) WILD-TYPE   11   39
   clus
vv  DEL PEAK 18(12Q12) MUTATED DEL PEAK 18(12Q12) WILD-TYPE
  0                          3                           11
  1                          4                           39
                              vv
clus                           M0 M1 MX
  DEL PEAK 18(12Q12) MUTATED    6  1  0
  DEL PEAK 18(12Q12) WILD-TYPE 26  1 23
D36V6, multiclass
    clus
vv   DEL PEAK 18(12Q12) MUTATED DEL PEAK 18(12Q12) WILD-TYPE
  M0                          6                           26
  M1                          1                            1
  MX                          0                           23
D36V7, binary
                              cls
clus                            0  1
  DEL PEAK 18(12Q12) MUTATED    4  3
  DEL PEAK 18(12Q12) WILD-TYPE 27 23
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 18(12Q12) MUTATED      4    3
  DEL PEAK 18(12Q12) WILD-TYPE   27   23
        clus
vv       DEL PEAK 18(12Q12) MUTATED DEL PEAK 18(12Q12) WILD-TYPE
  FEMALE                          4                           27
  MALE                            3                           23
                              vv
clus                           PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  DEL PEAK 18(12Q12) MUTATED                                     7
  DEL PEAK 18(12Q12) WILD-TYPE                                  44
                              vv
clus                           PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  DEL PEAK 18(12Q12) MUTATED                                       0
  DEL PEAK 18(12Q12) WILD-TYPE                                     4
                              vv
clus                           PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  DEL PEAK 18(12Q12) MUTATED                                                  0
  DEL PEAK 18(12Q12) WILD-TYPE                                                1
D36V8, multiclass
                                                  clus
vv                                                 DEL PEAK 18(12Q12) MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                       7
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                     0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                          0
                                                  clus
vv                                                 DEL PEAK 18(12Q12) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                        44
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                       4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                            1
D36V9, continuous
D36V10, continuous
[1] "Remove cluster labels:"     "DEL PEAK 18(12Q12) MUTATED"
clus
  DEL PEAK 18(12Q12) MUTATED DEL PEAK 18(12Q12) WILD-TYPE 
                           2                            9 
                  TCGA-FB-A4P5                   TCGA-IB-7644 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-IB-7649                   TCGA-IB-7651 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-IB-7885                   TCGA-IB-7891 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-IB-8126                   TCGA-IB-8127 
"DEL PEAK 18(12Q12) WILD-TYPE" "DEL PEAK 18(12Q12) WILD-TYPE" 
                  TCGA-IB-A5SS 
"DEL PEAK 18(12Q12) WILD-TYPE" 
                              vv
clus                           R0 R1 RX
  DEL PEAK 18(12Q12) MUTATED    3  3  0
  DEL PEAK 18(12Q12) WILD-TYPE 29 18  2
D36V11, multiclass
    clus
vv   DEL PEAK 18(12Q12) MUTATED DEL PEAK 18(12Q12) WILD-TYPE
  R0                          3                           29
  R1                          3                           18
  RX                          0                            2
D36V12, continuous

Clustering(37) Variable = DEL PEAK 19(12Q23.3) MUTATION ANALYSIS
D37V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 19(12Q23.3) MUTATED    7  5
  DEL PEAK 19(12Q23.3) WILD-TYPE 28 14
  DEL PEAK 19(12Q23.3) MUTATED DEL PEAK 19(12Q23.3) WILD-TYPE 
                            12                             42 
  DEL PEAK 19(12Q23.3) MUTATED DEL PEAK 19(12Q23.3) WILD-TYPE 
                             5                             14 
$`DEL PEAK 19(12Q23.3) MUTATED`
TCGA-H6-8124 TCGA-HZ-7289 TCGA-HZ-7922 TCGA-HZ-8636 TCGA-IB-7652 TCGA-IB-7885 
       12.89         7.86         0.13         0.16        15.65        27.98 
TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7890 TCGA-IB-7893 TCGA-IB-8127 TCGA-IB-A5SS 
        4.04         3.58        19.66         3.85        17.13        15.12 

$`DEL PEAK 19(12Q23.3) WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.96        11.84         7.07         5.03         5.19 
TCGA-FB-A4P5 TCGA-FB-A545 TCGA-H6-A45N TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7923 
        0.13         0.03         7.63         0.92         0.66         0.26 
TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 
       12.13        12.03         0.26         0.62         0.99         0.69 
TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8638 TCGA-HZ-A49G 
        3.91         0.92         0.49         0.10         2.96         0.76 
TCGA-HZ-A49H TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7646 
        1.02         5.98         1.51        11.41        49.38         4.77 
TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7891 
       21.86        15.35        19.82        43.79        15.78        16.04 
TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5ST 
       15.95         0.56        10.82         9.83         7.20         0.26 

  DEL PEAK 19(12Q23.3) MUTATED DEL PEAK 19(12Q23.3) WILD-TYPE 
                          0.13                           0.03 
  DEL PEAK 19(12Q23.3) MUTATED DEL PEAK 19(12Q23.3) WILD-TYPE 
                         27.98                          49.38 
  DEL PEAK 19(12Q23.3) MUTATED DEL PEAK 19(12Q23.3) WILD-TYPE 
                        10.375                          5.110 
[1] "0.1 - 28.0 (10.4)" "0.0 - 49.4 (5.1)" 
                    TCGA-F2-6879                     TCGA-F2-6880 
"DEL PEAK 19(12Q23.3) WILD-TYPE" "DEL PEAK 19(12Q23.3) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"DEL PEAK 19(12Q23.3) WILD-TYPE" "DEL PEAK 19(12Q23.3) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
"DEL PEAK 19(12Q23.3) WILD-TYPE" "DEL PEAK 19(12Q23.3) WILD-TYPE" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"DEL PEAK 19(12Q23.3) WILD-TYPE" "DEL PEAK 19(12Q23.3) WILD-TYPE" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
  "DEL PEAK 19(12Q23.3) MUTATED" "DEL PEAK 19(12Q23.3) WILD-TYPE" 
                    TCGA-HZ-7289                     TCGA-HZ-7918 
  "DEL PEAK 19(12Q23.3) MUTATED" "DEL PEAK 19(12Q23.3) WILD-TYPE" 
                    TCGA-HZ-7919                     TCGA-HZ-7922 
"DEL PEAK 19(12Q23.3) WILD-TYPE"   "DEL PEAK 19(12Q23.3) MUTATED" 
                    TCGA-HZ-7923                     TCGA-HZ-7924 
"DEL PEAK 19(12Q23.3) WILD-TYPE" "DEL PEAK 19(12Q23.3) WILD-TYPE" 
                    TCGA-HZ-7925                     TCGA-HZ-7926 
"DEL PEAK 19(12Q23.3) WILD-TYPE" "DEL PEAK 19(12Q23.3) WILD-TYPE" 
                    TCGA-HZ-8001                     TCGA-HZ-8002 
"DEL PEAK 19(12Q23.3) WILD-TYPE" "DEL PEAK 19(12Q23.3) WILD-TYPE" 
                    TCGA-HZ-8003                     TCGA-HZ-8005 
"DEL PEAK 19(12Q23.3) WILD-TYPE" "DEL PEAK 19(12Q23.3) WILD-TYPE" 
                    TCGA-HZ-8315                     TCGA-HZ-8317 
"DEL PEAK 19(12Q23.3) WILD-TYPE" "DEL PEAK 19(12Q23.3) WILD-TYPE" 
                    TCGA-HZ-8519                     TCGA-HZ-8636 
"DEL PEAK 19(12Q23.3) WILD-TYPE"   "DEL PEAK 19(12Q23.3) MUTATED" 
                    TCGA-HZ-8638                     TCGA-HZ-A49G 
"DEL PEAK 19(12Q23.3) WILD-TYPE" "DEL PEAK 19(12Q23.3) WILD-TYPE" 
                    TCGA-HZ-A49H                     TCGA-HZ-A4BH 
"DEL PEAK 19(12Q23.3) WILD-TYPE" "DEL PEAK 19(12Q23.3) WILD-TYPE" 
                    TCGA-HZ-A4BK                     TCGA-IB-7644 
"DEL PEAK 19(12Q23.3) WILD-TYPE" "DEL PEAK 19(12Q23.3) WILD-TYPE" 
                    TCGA-IB-7645                     TCGA-IB-7646 
"DEL PEAK 19(12Q23.3) WILD-TYPE" "DEL PEAK 19(12Q23.3) WILD-TYPE" 
                    TCGA-IB-7647                     TCGA-IB-7649 
"DEL PEAK 19(12Q23.3) WILD-TYPE" "DEL PEAK 19(12Q23.3) WILD-TYPE" 
                    TCGA-IB-7651                     TCGA-IB-7652 
"DEL PEAK 19(12Q23.3) WILD-TYPE"   "DEL PEAK 19(12Q23.3) MUTATED" 
                    TCGA-IB-7885                     TCGA-IB-7886 
  "DEL PEAK 19(12Q23.3) MUTATED"   "DEL PEAK 19(12Q23.3) MUTATED" 
                    TCGA-IB-7887                     TCGA-IB-7888 
  "DEL PEAK 19(12Q23.3) MUTATED" "DEL PEAK 19(12Q23.3) WILD-TYPE" 
                    TCGA-IB-7889                     TCGA-IB-7890 
"DEL PEAK 19(12Q23.3) WILD-TYPE"   "DEL PEAK 19(12Q23.3) MUTATED" 
                    TCGA-IB-7891                     TCGA-IB-7893 
"DEL PEAK 19(12Q23.3) WILD-TYPE"   "DEL PEAK 19(12Q23.3) MUTATED" 
                    TCGA-IB-7897                     TCGA-IB-8126 
"DEL PEAK 19(12Q23.3) WILD-TYPE" "DEL PEAK 19(12Q23.3) WILD-TYPE" 
                    TCGA-IB-8127                     TCGA-IB-A5SO 
  "DEL PEAK 19(12Q23.3) MUTATED" "DEL PEAK 19(12Q23.3) WILD-TYPE" 
                    TCGA-IB-A5SP                     TCGA-IB-A5SQ 
"DEL PEAK 19(12Q23.3) WILD-TYPE" "DEL PEAK 19(12Q23.3) WILD-TYPE" 
                    TCGA-IB-A5SS                     TCGA-IB-A5ST 
  "DEL PEAK 19(12Q23.3) MUTATED" "DEL PEAK 19(12Q23.3) WILD-TYPE" 
                    TCGA-F2-6879                     TCGA-F2-6880 
"DEL PEAK 19(12Q23.3) WILD-TYPE" "DEL PEAK 19(12Q23.3) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"DEL PEAK 19(12Q23.3) WILD-TYPE" "DEL PEAK 19(12Q23.3) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
"DEL PEAK 19(12Q23.3) WILD-TYPE" "DEL PEAK 19(12Q23.3) WILD-TYPE" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"DEL PEAK 19(12Q23.3) WILD-TYPE" "DEL PEAK 19(12Q23.3) WILD-TYPE" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
  "DEL PEAK 19(12Q23.3) MUTATED" "DEL PEAK 19(12Q23.3) WILD-TYPE" 
                    TCGA-HZ-7289                     TCGA-HZ-7918 
  "DEL PEAK 19(12Q23.3) MUTATED" "DEL PEAK 19(12Q23.3) WILD-TYPE" 
                    TCGA-HZ-7919                     TCGA-HZ-7922 
"DEL PEAK 19(12Q23.3) WILD-TYPE"   "DEL PEAK 19(12Q23.3) MUTATED" 
                    TCGA-HZ-7923                     TCGA-HZ-7924 
"DEL PEAK 19(12Q23.3) WILD-TYPE" "DEL PEAK 19(12Q23.3) WILD-TYPE" 
                    TCGA-HZ-7925                     TCGA-HZ-7926 
"DEL PEAK 19(12Q23.3) WILD-TYPE" "DEL PEAK 19(12Q23.3) WILD-TYPE" 
                    TCGA-HZ-8001                     TCGA-HZ-8002 
"DEL PEAK 19(12Q23.3) WILD-TYPE" "DEL PEAK 19(12Q23.3) WILD-TYPE" 
                    TCGA-HZ-8003                     TCGA-HZ-8005 
"DEL PEAK 19(12Q23.3) WILD-TYPE" "DEL PEAK 19(12Q23.3) WILD-TYPE" 
                    TCGA-HZ-8315                     TCGA-HZ-8317 
"DEL PEAK 19(12Q23.3) WILD-TYPE" "DEL PEAK 19(12Q23.3) WILD-TYPE" 
                    TCGA-HZ-8519                     TCGA-HZ-8636 
"DEL PEAK 19(12Q23.3) WILD-TYPE"   "DEL PEAK 19(12Q23.3) MUTATED" 
                    TCGA-HZ-8638                     TCGA-HZ-A49G 
"DEL PEAK 19(12Q23.3) WILD-TYPE" "DEL PEAK 19(12Q23.3) WILD-TYPE" 
                    TCGA-HZ-A49H                     TCGA-HZ-A4BH 
"DEL PEAK 19(12Q23.3) WILD-TYPE" "DEL PEAK 19(12Q23.3) WILD-TYPE" 
                    TCGA-HZ-A4BK                     TCGA-IB-7644 
"DEL PEAK 19(12Q23.3) WILD-TYPE" "DEL PEAK 19(12Q23.3) WILD-TYPE" 
                    TCGA-IB-7645                     TCGA-IB-7646 
"DEL PEAK 19(12Q23.3) WILD-TYPE" "DEL PEAK 19(12Q23.3) WILD-TYPE" 
                    TCGA-IB-7647                     TCGA-IB-7649 
"DEL PEAK 19(12Q23.3) WILD-TYPE" "DEL PEAK 19(12Q23.3) WILD-TYPE" 
                    TCGA-IB-7651                     TCGA-IB-7652 
"DEL PEAK 19(12Q23.3) WILD-TYPE"   "DEL PEAK 19(12Q23.3) MUTATED" 
                    TCGA-IB-7885                     TCGA-IB-7886 
  "DEL PEAK 19(12Q23.3) MUTATED"   "DEL PEAK 19(12Q23.3) MUTATED" 
                    TCGA-IB-7887                     TCGA-IB-7888 
  "DEL PEAK 19(12Q23.3) MUTATED" "DEL PEAK 19(12Q23.3) WILD-TYPE" 
                    TCGA-IB-7889                     TCGA-IB-7890 
"DEL PEAK 19(12Q23.3) WILD-TYPE"   "DEL PEAK 19(12Q23.3) MUTATED" 
                    TCGA-IB-7891                     TCGA-IB-7893 
"DEL PEAK 19(12Q23.3) WILD-TYPE"   "DEL PEAK 19(12Q23.3) MUTATED" 
                    TCGA-IB-7897                     TCGA-IB-8126 
"DEL PEAK 19(12Q23.3) WILD-TYPE" "DEL PEAK 19(12Q23.3) WILD-TYPE" 
                    TCGA-IB-8127                     TCGA-IB-A5SO 
  "DEL PEAK 19(12Q23.3) MUTATED" "DEL PEAK 19(12Q23.3) WILD-TYPE" 
                    TCGA-IB-A5SP                     TCGA-IB-A5SQ 
"DEL PEAK 19(12Q23.3) WILD-TYPE" "DEL PEAK 19(12Q23.3) WILD-TYPE" 
                    TCGA-IB-A5SS                     TCGA-IB-A5ST 
  "DEL PEAK 19(12Q23.3) MUTATED" "DEL PEAK 19(12Q23.3) WILD-TYPE" 
                    TCGA-F2-6879                     TCGA-F2-6880 
"DEL PEAK 19(12Q23.3) WILD-TYPE" "DEL PEAK 19(12Q23.3) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"DEL PEAK 19(12Q23.3) WILD-TYPE" "DEL PEAK 19(12Q23.3) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
"DEL PEAK 19(12Q23.3) WILD-TYPE" "DEL PEAK 19(12Q23.3) WILD-TYPE" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"DEL PEAK 19(12Q23.3) WILD-TYPE" "DEL PEAK 19(12Q23.3) WILD-TYPE" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
  "DEL PEAK 19(12Q23.3) MUTATED" "DEL PEAK 19(12Q23.3) WILD-TYPE" 
                    TCGA-HZ-7289                     TCGA-HZ-7918 
  "DEL PEAK 19(12Q23.3) MUTATED" "DEL PEAK 19(12Q23.3) WILD-TYPE" 
                    TCGA-HZ-7919                     TCGA-HZ-7922 
"DEL PEAK 19(12Q23.3) WILD-TYPE"   "DEL PEAK 19(12Q23.3) MUTATED" 
                    TCGA-HZ-7923                     TCGA-HZ-7924 
"DEL PEAK 19(12Q23.3) WILD-TYPE" "DEL PEAK 19(12Q23.3) WILD-TYPE" 
                    TCGA-HZ-7925                     TCGA-HZ-7926 
"DEL PEAK 19(12Q23.3) WILD-TYPE" "DEL PEAK 19(12Q23.3) WILD-TYPE" 
                    TCGA-HZ-8001                     TCGA-HZ-8002 
"DEL PEAK 19(12Q23.3) WILD-TYPE" "DEL PEAK 19(12Q23.3) WILD-TYPE" 
                    TCGA-HZ-8003                     TCGA-HZ-8005 
"DEL PEAK 19(12Q23.3) WILD-TYPE" "DEL PEAK 19(12Q23.3) WILD-TYPE" 
                    TCGA-HZ-8315                     TCGA-HZ-8317 
"DEL PEAK 19(12Q23.3) WILD-TYPE" "DEL PEAK 19(12Q23.3) WILD-TYPE" 
                    TCGA-HZ-8519                     TCGA-HZ-8636 
"DEL PEAK 19(12Q23.3) WILD-TYPE"   "DEL PEAK 19(12Q23.3) MUTATED" 
                    TCGA-HZ-8638                     TCGA-HZ-A49G 
"DEL PEAK 19(12Q23.3) WILD-TYPE" "DEL PEAK 19(12Q23.3) WILD-TYPE" 
                    TCGA-HZ-A49H                     TCGA-HZ-A4BH 
"DEL PEAK 19(12Q23.3) WILD-TYPE" "DEL PEAK 19(12Q23.3) WILD-TYPE" 
                    TCGA-HZ-A4BK                     TCGA-IB-7644 
"DEL PEAK 19(12Q23.3) WILD-TYPE" "DEL PEAK 19(12Q23.3) WILD-TYPE" 
                    TCGA-IB-7645                     TCGA-IB-7646 
"DEL PEAK 19(12Q23.3) WILD-TYPE" "DEL PEAK 19(12Q23.3) WILD-TYPE" 
                    TCGA-IB-7647                     TCGA-IB-7649 
"DEL PEAK 19(12Q23.3) WILD-TYPE" "DEL PEAK 19(12Q23.3) WILD-TYPE" 
                    TCGA-IB-7651                     TCGA-IB-7652 
"DEL PEAK 19(12Q23.3) WILD-TYPE"   "DEL PEAK 19(12Q23.3) MUTATED" 
                    TCGA-IB-7885                     TCGA-IB-7886 
  "DEL PEAK 19(12Q23.3) MUTATED"   "DEL PEAK 19(12Q23.3) MUTATED" 
                    TCGA-IB-7887                     TCGA-IB-7888 
  "DEL PEAK 19(12Q23.3) MUTATED" "DEL PEAK 19(12Q23.3) WILD-TYPE" 
                    TCGA-IB-7889                     TCGA-IB-7890 
"DEL PEAK 19(12Q23.3) WILD-TYPE"   "DEL PEAK 19(12Q23.3) MUTATED" 
                    TCGA-IB-7891                     TCGA-IB-7893 
"DEL PEAK 19(12Q23.3) WILD-TYPE"   "DEL PEAK 19(12Q23.3) MUTATED" 
                    TCGA-IB-7897                     TCGA-IB-8126 
"DEL PEAK 19(12Q23.3) WILD-TYPE" "DEL PEAK 19(12Q23.3) WILD-TYPE" 
                    TCGA-IB-8127                     TCGA-IB-A5SO 
  "DEL PEAK 19(12Q23.3) MUTATED" "DEL PEAK 19(12Q23.3) WILD-TYPE" 
                    TCGA-IB-A5SP                     TCGA-IB-A5SQ 
"DEL PEAK 19(12Q23.3) WILD-TYPE" "DEL PEAK 19(12Q23.3) WILD-TYPE" 
                    TCGA-IB-A5SS                     TCGA-IB-A5ST 
  "DEL PEAK 19(12Q23.3) MUTATED" "DEL PEAK 19(12Q23.3) WILD-TYPE" 
[1] "hr=" "1"  
D37V2, continuous
                                vv
clus                             STAGE IA STAGE IB STAGE IIA STAGE IIB
  DEL PEAK 19(12Q23.3) MUTATED          0        1         1        10
  DEL PEAK 19(12Q23.3) WILD-TYPE        2        2         6        31
                                vv
clus                             STAGE III STAGE IV
  DEL PEAK 19(12Q23.3) MUTATED           0        1
  DEL PEAK 19(12Q23.3) WILD-TYPE         2        1
D37V3, multiclass
                                vv
clus                             T1+T2 T3+T4
  DEL PEAK 19(12Q23.3) MUTATED       1    12
  DEL PEAK 19(12Q23.3) WILD-TYPE     5    39
D37V4, multiclass
       clus
vv      DEL PEAK 19(12Q23.3) MUTATED DEL PEAK 19(12Q23.3) WILD-TYPE
  T1+T2                            1                              5
  T3+T4                           12                             39
D37V5, binary
                                cls
clus                              0  1
  DEL PEAK 19(12Q23.3) MUTATED    3 10
  DEL PEAK 19(12Q23.3) WILD-TYPE 11 33
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 19(12Q23.3) MUTATED      3   10
  DEL PEAK 19(12Q23.3) WILD-TYPE   11   33
   clus
vv  DEL PEAK 19(12Q23.3) MUTATED DEL PEAK 19(12Q23.3) WILD-TYPE
  0                            3                             11
  1                           10                             33
                                vv
clus                             M0 M1 MX
  DEL PEAK 19(12Q23.3) MUTATED    9  1  3
  DEL PEAK 19(12Q23.3) WILD-TYPE 23  1 20
D37V6, multiclass
    clus
vv   DEL PEAK 19(12Q23.3) MUTATED DEL PEAK 19(12Q23.3) WILD-TYPE
  M0                            9                             23
  M1                            1                              1
  MX                            3                             20
D37V7, binary
                                cls
clus                              0  1
  DEL PEAK 19(12Q23.3) MUTATED    7  6
  DEL PEAK 19(12Q23.3) WILD-TYPE 24 20
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 19(12Q23.3) MUTATED      7    6
  DEL PEAK 19(12Q23.3) WILD-TYPE   24   20
        clus
vv       DEL PEAK 19(12Q23.3) MUTATED DEL PEAK 19(12Q23.3) WILD-TYPE
  FEMALE                            7                             24
  MALE                              6                             20
                                vv
clus                             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  DEL PEAK 19(12Q23.3) MUTATED                                    12
  DEL PEAK 19(12Q23.3) WILD-TYPE                                  39
                                vv
clus                             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  DEL PEAK 19(12Q23.3) MUTATED                                       1
  DEL PEAK 19(12Q23.3) WILD-TYPE                                     3
                                vv
clus                             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  DEL PEAK 19(12Q23.3) MUTATED                                                  0
  DEL PEAK 19(12Q23.3) WILD-TYPE                                                1
D37V8, multiclass
                                                  clus
vv                                                 DEL PEAK 19(12Q23.3) MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                        12
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                       1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                            0
                                                  clus
vv                                                 DEL PEAK 19(12Q23.3) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                          39
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                         3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                              1
D37V9, continuous
D37V10, continuous
                                vv
clus                             R0 R1 RX
  DEL PEAK 19(12Q23.3) MUTATED    6  6  1
  DEL PEAK 19(12Q23.3) WILD-TYPE 26 15  1
D37V11, multiclass
    clus
vv   DEL PEAK 19(12Q23.3) MUTATED DEL PEAK 19(12Q23.3) WILD-TYPE
  R0                            6                             26
  R1                            6                             15
  RX                            1                              1
D37V12, continuous

Clustering(38) Variable = DEL PEAK 20(15Q15.1) MUTATION ANALYSIS
D38V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 20(15Q15.1) MUTATED    8  3
  DEL PEAK 20(15Q15.1) WILD-TYPE 27 16
  DEL PEAK 20(15Q15.1) MUTATED DEL PEAK 20(15Q15.1) WILD-TYPE 
                            11                             43 
  DEL PEAK 20(15Q15.1) MUTATED DEL PEAK 20(15Q15.1) WILD-TYPE 
                             3                             16 
$`DEL PEAK 20(15Q15.1) MUTATED`
TCGA-FB-A545 TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7922 TCGA-HZ-8005 TCGA-HZ-A4BK 
        0.03         7.86         0.92         0.13         3.91         1.51 
TCGA-IB-7644 TCGA-IB-7890 TCGA-IB-7893 TCGA-IB-8127 TCGA-IB-A5SP 
       11.41        19.66         3.85        17.13         9.83 

$`DEL PEAK 20(15Q15.1) WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.96        11.84         7.07         5.03         5.19 
TCGA-FB-A4P5 TCGA-H6-8124 TCGA-H6-A45N TCGA-HZ-7919 TCGA-HZ-7923 TCGA-HZ-7924 
        0.13        12.89         7.63         0.66         0.26        12.13 
TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8315 
       12.03         0.26         0.62         0.99         0.69         0.92 
TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H 
        0.49         0.10         0.16         2.96         0.76         1.02 
TCGA-HZ-A4BH TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 
        5.98        49.38         4.77        21.86        15.35        19.82 
TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 
       15.65        27.98         4.04         3.58        43.79        15.78 
TCGA-IB-7891 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-A5SO TCGA-IB-A5SQ TCGA-IB-A5SS 
       16.04        15.95         0.56        10.82         7.20        15.12 
TCGA-IB-A5ST 
        0.26 

  DEL PEAK 20(15Q15.1) MUTATED DEL PEAK 20(15Q15.1) WILD-TYPE 
                          0.03                           0.10 
  DEL PEAK 20(15Q15.1) MUTATED DEL PEAK 20(15Q15.1) WILD-TYPE 
                         19.66                          49.38 
  DEL PEAK 20(15Q15.1) MUTATED DEL PEAK 20(15Q15.1) WILD-TYPE 
                          3.91                           5.98 
[1] "0.0 - 19.7 (3.9)" "0.1 - 49.4 (6.0)"
                    TCGA-F2-6879                     TCGA-F2-6880 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"DEL PEAK 20(15Q15.1) WILD-TYPE"   "DEL PEAK 20(15Q15.1) MUTATED" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-HZ-7289                     TCGA-HZ-7918 
  "DEL PEAK 20(15Q15.1) MUTATED"   "DEL PEAK 20(15Q15.1) MUTATED" 
                    TCGA-HZ-7919                     TCGA-HZ-7922 
"DEL PEAK 20(15Q15.1) WILD-TYPE"   "DEL PEAK 20(15Q15.1) MUTATED" 
                    TCGA-HZ-7923                     TCGA-HZ-7924 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-HZ-7925                     TCGA-HZ-7926 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-HZ-8001                     TCGA-HZ-8002 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-HZ-8003                     TCGA-HZ-8005 
"DEL PEAK 20(15Q15.1) WILD-TYPE"   "DEL PEAK 20(15Q15.1) MUTATED" 
                    TCGA-HZ-8315                     TCGA-HZ-8317 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-HZ-8519                     TCGA-HZ-8636 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-HZ-8638                     TCGA-HZ-A49G 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-HZ-A49H                     TCGA-HZ-A4BH 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-HZ-A4BK                     TCGA-IB-7644 
  "DEL PEAK 20(15Q15.1) MUTATED"   "DEL PEAK 20(15Q15.1) MUTATED" 
                    TCGA-IB-7645                     TCGA-IB-7646 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-IB-7647                     TCGA-IB-7649 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-IB-7651                     TCGA-IB-7652 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-IB-7885                     TCGA-IB-7886 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-IB-7887                     TCGA-IB-7888 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-IB-7889                     TCGA-IB-7890 
"DEL PEAK 20(15Q15.1) WILD-TYPE"   "DEL PEAK 20(15Q15.1) MUTATED" 
                    TCGA-IB-7891                     TCGA-IB-7893 
"DEL PEAK 20(15Q15.1) WILD-TYPE"   "DEL PEAK 20(15Q15.1) MUTATED" 
                    TCGA-IB-7897                     TCGA-IB-8126 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-IB-8127                     TCGA-IB-A5SO 
  "DEL PEAK 20(15Q15.1) MUTATED" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-IB-A5SP                     TCGA-IB-A5SQ 
  "DEL PEAK 20(15Q15.1) MUTATED" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-IB-A5SS                     TCGA-IB-A5ST 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-F2-6879                     TCGA-F2-6880 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"DEL PEAK 20(15Q15.1) WILD-TYPE"   "DEL PEAK 20(15Q15.1) MUTATED" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-HZ-7289                     TCGA-HZ-7918 
  "DEL PEAK 20(15Q15.1) MUTATED"   "DEL PEAK 20(15Q15.1) MUTATED" 
                    TCGA-HZ-7919                     TCGA-HZ-7922 
"DEL PEAK 20(15Q15.1) WILD-TYPE"   "DEL PEAK 20(15Q15.1) MUTATED" 
                    TCGA-HZ-7923                     TCGA-HZ-7924 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-HZ-7925                     TCGA-HZ-7926 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-HZ-8001                     TCGA-HZ-8002 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-HZ-8003                     TCGA-HZ-8005 
"DEL PEAK 20(15Q15.1) WILD-TYPE"   "DEL PEAK 20(15Q15.1) MUTATED" 
                    TCGA-HZ-8315                     TCGA-HZ-8317 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-HZ-8519                     TCGA-HZ-8636 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-HZ-8638                     TCGA-HZ-A49G 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-HZ-A49H                     TCGA-HZ-A4BH 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-HZ-A4BK                     TCGA-IB-7644 
  "DEL PEAK 20(15Q15.1) MUTATED"   "DEL PEAK 20(15Q15.1) MUTATED" 
                    TCGA-IB-7645                     TCGA-IB-7646 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-IB-7647                     TCGA-IB-7649 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-IB-7651                     TCGA-IB-7652 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-IB-7885                     TCGA-IB-7886 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-IB-7887                     TCGA-IB-7888 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-IB-7889                     TCGA-IB-7890 
"DEL PEAK 20(15Q15.1) WILD-TYPE"   "DEL PEAK 20(15Q15.1) MUTATED" 
                    TCGA-IB-7891                     TCGA-IB-7893 
"DEL PEAK 20(15Q15.1) WILD-TYPE"   "DEL PEAK 20(15Q15.1) MUTATED" 
                    TCGA-IB-7897                     TCGA-IB-8126 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-IB-8127                     TCGA-IB-A5SO 
  "DEL PEAK 20(15Q15.1) MUTATED" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-IB-A5SP                     TCGA-IB-A5SQ 
  "DEL PEAK 20(15Q15.1) MUTATED" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-IB-A5SS                     TCGA-IB-A5ST 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-F2-6879                     TCGA-F2-6880 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"DEL PEAK 20(15Q15.1) WILD-TYPE"   "DEL PEAK 20(15Q15.1) MUTATED" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-HZ-7289                     TCGA-HZ-7918 
  "DEL PEAK 20(15Q15.1) MUTATED"   "DEL PEAK 20(15Q15.1) MUTATED" 
                    TCGA-HZ-7919                     TCGA-HZ-7922 
"DEL PEAK 20(15Q15.1) WILD-TYPE"   "DEL PEAK 20(15Q15.1) MUTATED" 
                    TCGA-HZ-7923                     TCGA-HZ-7924 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-HZ-7925                     TCGA-HZ-7926 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-HZ-8001                     TCGA-HZ-8002 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-HZ-8003                     TCGA-HZ-8005 
"DEL PEAK 20(15Q15.1) WILD-TYPE"   "DEL PEAK 20(15Q15.1) MUTATED" 
                    TCGA-HZ-8315                     TCGA-HZ-8317 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-HZ-8519                     TCGA-HZ-8636 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-HZ-8638                     TCGA-HZ-A49G 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-HZ-A49H                     TCGA-HZ-A4BH 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-HZ-A4BK                     TCGA-IB-7644 
  "DEL PEAK 20(15Q15.1) MUTATED"   "DEL PEAK 20(15Q15.1) MUTATED" 
                    TCGA-IB-7645                     TCGA-IB-7646 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-IB-7647                     TCGA-IB-7649 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-IB-7651                     TCGA-IB-7652 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-IB-7885                     TCGA-IB-7886 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-IB-7887                     TCGA-IB-7888 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-IB-7889                     TCGA-IB-7890 
"DEL PEAK 20(15Q15.1) WILD-TYPE"   "DEL PEAK 20(15Q15.1) MUTATED" 
                    TCGA-IB-7891                     TCGA-IB-7893 
"DEL PEAK 20(15Q15.1) WILD-TYPE"   "DEL PEAK 20(15Q15.1) MUTATED" 
                    TCGA-IB-7897                     TCGA-IB-8126 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-IB-8127                     TCGA-IB-A5SO 
  "DEL PEAK 20(15Q15.1) MUTATED" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-IB-A5SP                     TCGA-IB-A5SQ 
  "DEL PEAK 20(15Q15.1) MUTATED" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-IB-A5SS                     TCGA-IB-A5ST 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
[1] "hr=" "1.1"
D38V2, continuous
                                vv
clus                             STAGE IA STAGE IB STAGE IIA STAGE IIB
  DEL PEAK 20(15Q15.1) MUTATED          0        1         2         7
  DEL PEAK 20(15Q15.1) WILD-TYPE        2        2         5        34
                                vv
clus                             STAGE III STAGE IV
  DEL PEAK 20(15Q15.1) MUTATED           0        1
  DEL PEAK 20(15Q15.1) WILD-TYPE         2        1
D38V3, multiclass
                                vv
clus                             T1+T2 T3+T4
  DEL PEAK 20(15Q15.1) MUTATED       1    10
  DEL PEAK 20(15Q15.1) WILD-TYPE     5    41
D38V4, multiclass
       clus
vv      DEL PEAK 20(15Q15.1) MUTATED DEL PEAK 20(15Q15.1) WILD-TYPE
  T1+T2                            1                              5
  T3+T4                           10                             41
D38V5, binary
                                cls
clus                              0  1
  DEL PEAK 20(15Q15.1) MUTATED    3  8
  DEL PEAK 20(15Q15.1) WILD-TYPE 11 35
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 20(15Q15.1) MUTATED      3    8
  DEL PEAK 20(15Q15.1) WILD-TYPE   11   35
   clus
vv  DEL PEAK 20(15Q15.1) MUTATED DEL PEAK 20(15Q15.1) WILD-TYPE
  0                            3                             11
  1                            8                             35
                                vv
clus                             M0 M1 MX
  DEL PEAK 20(15Q15.1) MUTATED    6  1  4
  DEL PEAK 20(15Q15.1) WILD-TYPE 26  1 19
D38V6, multiclass
    clus
vv   DEL PEAK 20(15Q15.1) MUTATED DEL PEAK 20(15Q15.1) WILD-TYPE
  M0                            6                             26
  M1                            1                              1
  MX                            4                             19
D38V7, binary
                                cls
clus                              0  1
  DEL PEAK 20(15Q15.1) MUTATED    3  8
  DEL PEAK 20(15Q15.1) WILD-TYPE 28 18
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 20(15Q15.1) MUTATED      3    8
  DEL PEAK 20(15Q15.1) WILD-TYPE   28   18
        clus
vv       DEL PEAK 20(15Q15.1) MUTATED DEL PEAK 20(15Q15.1) WILD-TYPE
  FEMALE                            3                             28
  MALE                              8                             18
                                vv
clus                             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  DEL PEAK 20(15Q15.1) MUTATED                                     9
  DEL PEAK 20(15Q15.1) WILD-TYPE                                  42
                                vv
clus                             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  DEL PEAK 20(15Q15.1) MUTATED                                       2
  DEL PEAK 20(15Q15.1) WILD-TYPE                                     2
                                vv
clus                             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  DEL PEAK 20(15Q15.1) MUTATED                                                  0
  DEL PEAK 20(15Q15.1) WILD-TYPE                                                1
D38V8, multiclass
                                                  clus
vv                                                 DEL PEAK 20(15Q15.1) MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                         9
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                       2
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                            0
                                                  clus
vv                                                 DEL PEAK 20(15Q15.1) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                          42
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                         2
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                              1
D38V9, continuous
[1] "Remove cluster labels:"       "DEL PEAK 20(15Q15.1) MUTATED"
clus
  DEL PEAK 20(15Q15.1) MUTATED DEL PEAK 20(15Q15.1) WILD-TYPE 
                             2                             12 
                    TCGA-F2-6880                     TCGA-FB-A4P5 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-IB-7649                     TCGA-IB-7651 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-IB-7885                     TCGA-IB-7886 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-IB-7887                     TCGA-IB-7891 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-IB-8126                     TCGA-IB-A5SS 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
D38V10, continuous
[1] "Remove cluster labels:"       "DEL PEAK 20(15Q15.1) MUTATED"
clus
  DEL PEAK 20(15Q15.1) MUTATED DEL PEAK 20(15Q15.1) WILD-TYPE 
                             2                              9 
                    TCGA-FB-A4P5                     TCGA-H6-8124 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-IB-7649                     TCGA-IB-7651 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-IB-7885                     TCGA-IB-7886 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-IB-7891                     TCGA-IB-8126 
"DEL PEAK 20(15Q15.1) WILD-TYPE" "DEL PEAK 20(15Q15.1) WILD-TYPE" 
                    TCGA-IB-A5SS 
"DEL PEAK 20(15Q15.1) WILD-TYPE" 
                                vv
clus                             R0 R1 RX
  DEL PEAK 20(15Q15.1) MUTATED    4  5  1
  DEL PEAK 20(15Q15.1) WILD-TYPE 28 16  1
D38V11, multiclass
    clus
vv   DEL PEAK 20(15Q15.1) MUTATED DEL PEAK 20(15Q15.1) WILD-TYPE
  R0                            4                             28
  R1                            5                             16
  RX                            1                              1
D38V12, continuous

Clustering(39) Variable = DEL PEAK 22(17Q22) MUTATION ANALYSIS
D39V1, survival
                              sevent
clus2                           0  1
  DEL PEAK 22(17Q22) MUTATED   10  6
  DEL PEAK 22(17Q22) WILD-TYPE 25 13
  DEL PEAK 22(17Q22) MUTATED DEL PEAK 22(17Q22) WILD-TYPE 
                          16                           38 
  DEL PEAK 22(17Q22) MUTATED DEL PEAK 22(17Q22) WILD-TYPE 
                           6                           13 
$`DEL PEAK 22(17Q22) MUTATED`
TCGA-F2-6879 TCGA-FB-A545 TCGA-HZ-7289 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-8005 
       10.98         0.03         7.86         0.66         0.13         3.91 
TCGA-HZ-8636 TCGA-HZ-A4BH TCGA-IB-7644 TCGA-IB-7646 TCGA-IB-7652 TCGA-IB-7886 
        0.16         5.98        11.41         4.77        15.65         4.04 
TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-8127 TCGA-IB-A5SP 
        3.58        43.79        17.13         9.83 

$`DEL PEAK 22(17Q22) WILD-TYPE`
TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A4P5 
        9.96        11.84         7.07         5.03         5.19         0.13 
TCGA-H6-8124 TCGA-H6-A45N TCGA-HZ-7918 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
       12.89         7.63         0.92         0.26        12.13        12.03 
TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8315 TCGA-HZ-8317 
        0.26         0.62         0.99         0.69         0.92         0.49 
TCGA-HZ-8519 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BK TCGA-IB-7645 
        0.10         2.96         0.76         1.02         1.51        49.38 
TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7885 TCGA-IB-7889 TCGA-IB-7890 
       21.86        15.35        19.82        27.98        15.78        19.66 
TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-A5SO TCGA-IB-A5SQ 
       16.04         3.85        15.95         0.56        10.82         7.20 
TCGA-IB-A5SS TCGA-IB-A5ST 
       15.12         0.26 

  DEL PEAK 22(17Q22) MUTATED DEL PEAK 22(17Q22) WILD-TYPE 
                        0.03                         0.10 
  DEL PEAK 22(17Q22) MUTATED DEL PEAK 22(17Q22) WILD-TYPE 
                       43.79                        49.38 
  DEL PEAK 22(17Q22) MUTATED DEL PEAK 22(17Q22) WILD-TYPE 
                       5.375                        6.130 
[1] "0.0 - 43.8 (5.4)" "0.1 - 49.4 (6.1)"
                  TCGA-F2-6879                   TCGA-F2-6880 
  "DEL PEAK 22(17Q22) MUTATED" "DEL PEAK 22(17Q22) WILD-TYPE" 
                  TCGA-F2-7273                   TCGA-F2-7276 
"DEL PEAK 22(17Q22) WILD-TYPE" "DEL PEAK 22(17Q22) WILD-TYPE" 
                  TCGA-F2-A44G                   TCGA-F2-A44H 
"DEL PEAK 22(17Q22) WILD-TYPE" "DEL PEAK 22(17Q22) WILD-TYPE" 
                  TCGA-FB-A4P5                   TCGA-FB-A545 
"DEL PEAK 22(17Q22) WILD-TYPE"   "DEL PEAK 22(17Q22) MUTATED" 
                  TCGA-H6-8124                   TCGA-H6-A45N 
"DEL PEAK 22(17Q22) WILD-TYPE" "DEL PEAK 22(17Q22) WILD-TYPE" 
                  TCGA-HZ-7289                   TCGA-HZ-7918 
  "DEL PEAK 22(17Q22) MUTATED" "DEL PEAK 22(17Q22) WILD-TYPE" 
                  TCGA-HZ-7919                   TCGA-HZ-7922 
  "DEL PEAK 22(17Q22) MUTATED"   "DEL PEAK 22(17Q22) MUTATED" 
                  TCGA-HZ-7923                   TCGA-HZ-7924 
"DEL PEAK 22(17Q22) WILD-TYPE" "DEL PEAK 22(17Q22) WILD-TYPE" 
                  TCGA-HZ-7925                   TCGA-HZ-7926 
"DEL PEAK 22(17Q22) WILD-TYPE" "DEL PEAK 22(17Q22) WILD-TYPE" 
                  TCGA-HZ-8001                   TCGA-HZ-8002 
"DEL PEAK 22(17Q22) WILD-TYPE" "DEL PEAK 22(17Q22) WILD-TYPE" 
                  TCGA-HZ-8003                   TCGA-HZ-8005 
"DEL PEAK 22(17Q22) WILD-TYPE"   "DEL PEAK 22(17Q22) MUTATED" 
                  TCGA-HZ-8315                   TCGA-HZ-8317 
"DEL PEAK 22(17Q22) WILD-TYPE" "DEL PEAK 22(17Q22) WILD-TYPE" 
                  TCGA-HZ-8519                   TCGA-HZ-8636 
"DEL PEAK 22(17Q22) WILD-TYPE"   "DEL PEAK 22(17Q22) MUTATED" 
                  TCGA-HZ-8638                   TCGA-HZ-A49G 
"DEL PEAK 22(17Q22) WILD-TYPE" "DEL PEAK 22(17Q22) WILD-TYPE" 
                  TCGA-HZ-A49H                   TCGA-HZ-A4BH 
"DEL PEAK 22(17Q22) WILD-TYPE"   "DEL PEAK 22(17Q22) MUTATED" 
                  TCGA-HZ-A4BK                   TCGA-IB-7644 
"DEL PEAK 22(17Q22) WILD-TYPE"   "DEL PEAK 22(17Q22) MUTATED" 
                  TCGA-IB-7645                   TCGA-IB-7646 
"DEL PEAK 22(17Q22) WILD-TYPE"   "DEL PEAK 22(17Q22) MUTATED" 
                  TCGA-IB-7647                   TCGA-IB-7649 
"DEL PEAK 22(17Q22) WILD-TYPE" "DEL PEAK 22(17Q22) WILD-TYPE" 
                  TCGA-IB-7651                   TCGA-IB-7652 
"DEL PEAK 22(17Q22) WILD-TYPE"   "DEL PEAK 22(17Q22) MUTATED" 
                  TCGA-IB-7885                   TCGA-IB-7886 
"DEL PEAK 22(17Q22) WILD-TYPE"   "DEL PEAK 22(17Q22) MUTATED" 
                  TCGA-IB-7887                   TCGA-IB-7888 
  "DEL PEAK 22(17Q22) MUTATED"   "DEL PEAK 22(17Q22) MUTATED" 
                  TCGA-IB-7889                   TCGA-IB-7890 
"DEL PEAK 22(17Q22) WILD-TYPE" "DEL PEAK 22(17Q22) WILD-TYPE" 
                  TCGA-IB-7891                   TCGA-IB-7893 
"DEL PEAK 22(17Q22) WILD-TYPE" "DEL PEAK 22(17Q22) WILD-TYPE" 
                  TCGA-IB-7897                   TCGA-IB-8126 
"DEL PEAK 22(17Q22) WILD-TYPE" "DEL PEAK 22(17Q22) WILD-TYPE" 
                  TCGA-IB-8127                   TCGA-IB-A5SO 
  "DEL PEAK 22(17Q22) MUTATED" "DEL PEAK 22(17Q22) WILD-TYPE" 
                  TCGA-IB-A5SP                   TCGA-IB-A5SQ 
  "DEL PEAK 22(17Q22) MUTATED" "DEL PEAK 22(17Q22) WILD-TYPE" 
                  TCGA-IB-A5SS                   TCGA-IB-A5ST 
"DEL PEAK 22(17Q22) WILD-TYPE" "DEL PEAK 22(17Q22) WILD-TYPE" 
                  TCGA-F2-6879                   TCGA-F2-6880 
  "DEL PEAK 22(17Q22) MUTATED" "DEL PEAK 22(17Q22) WILD-TYPE" 
                  TCGA-F2-7273                   TCGA-F2-7276 
"DEL PEAK 22(17Q22) WILD-TYPE" "DEL PEAK 22(17Q22) WILD-TYPE" 
                  TCGA-F2-A44G                   TCGA-F2-A44H 
"DEL PEAK 22(17Q22) WILD-TYPE" "DEL PEAK 22(17Q22) WILD-TYPE" 
                  TCGA-FB-A4P5                   TCGA-FB-A545 
"DEL PEAK 22(17Q22) WILD-TYPE"   "DEL PEAK 22(17Q22) MUTATED" 
                  TCGA-H6-8124                   TCGA-H6-A45N 
"DEL PEAK 22(17Q22) WILD-TYPE" "DEL PEAK 22(17Q22) WILD-TYPE" 
                  TCGA-HZ-7289                   TCGA-HZ-7918 
  "DEL PEAK 22(17Q22) MUTATED" "DEL PEAK 22(17Q22) WILD-TYPE" 
                  TCGA-HZ-7919                   TCGA-HZ-7922 
  "DEL PEAK 22(17Q22) MUTATED"   "DEL PEAK 22(17Q22) MUTATED" 
                  TCGA-HZ-7923                   TCGA-HZ-7924 
"DEL PEAK 22(17Q22) WILD-TYPE" "DEL PEAK 22(17Q22) WILD-TYPE" 
                  TCGA-HZ-7925                   TCGA-HZ-7926 
"DEL PEAK 22(17Q22) WILD-TYPE" "DEL PEAK 22(17Q22) WILD-TYPE" 
                  TCGA-HZ-8001                   TCGA-HZ-8002 
"DEL PEAK 22(17Q22) WILD-TYPE" "DEL PEAK 22(17Q22) WILD-TYPE" 
                  TCGA-HZ-8003                   TCGA-HZ-8005 
"DEL PEAK 22(17Q22) WILD-TYPE"   "DEL PEAK 22(17Q22) MUTATED" 
                  TCGA-HZ-8315                   TCGA-HZ-8317 
"DEL PEAK 22(17Q22) WILD-TYPE" "DEL PEAK 22(17Q22) WILD-TYPE" 
                  TCGA-HZ-8519                   TCGA-HZ-8636 
"DEL PEAK 22(17Q22) WILD-TYPE"   "DEL PEAK 22(17Q22) MUTATED" 
                  TCGA-HZ-8638                   TCGA-HZ-A49G 
"DEL PEAK 22(17Q22) WILD-TYPE" "DEL PEAK 22(17Q22) WILD-TYPE" 
                  TCGA-HZ-A49H                   TCGA-HZ-A4BH 
"DEL PEAK 22(17Q22) WILD-TYPE"   "DEL PEAK 22(17Q22) MUTATED" 
                  TCGA-HZ-A4BK                   TCGA-IB-7644 
"DEL PEAK 22(17Q22) WILD-TYPE"   "DEL PEAK 22(17Q22) MUTATED" 
                  TCGA-IB-7645                   TCGA-IB-7646 
"DEL PEAK 22(17Q22) WILD-TYPE"   "DEL PEAK 22(17Q22) MUTATED" 
                  TCGA-IB-7647                   TCGA-IB-7649 
"DEL PEAK 22(17Q22) WILD-TYPE" "DEL PEAK 22(17Q22) WILD-TYPE" 
                  TCGA-IB-7651                   TCGA-IB-7652 
"DEL PEAK 22(17Q22) WILD-TYPE"   "DEL PEAK 22(17Q22) MUTATED" 
                  TCGA-IB-7885                   TCGA-IB-7886 
"DEL PEAK 22(17Q22) WILD-TYPE"   "DEL PEAK 22(17Q22) MUTATED" 
                  TCGA-IB-7887                   TCGA-IB-7888 
  "DEL PEAK 22(17Q22) MUTATED"   "DEL PEAK 22(17Q22) MUTATED" 
                  TCGA-IB-7889                   TCGA-IB-7890 
"DEL PEAK 22(17Q22) WILD-TYPE" "DEL PEAK 22(17Q22) WILD-TYPE" 
                  TCGA-IB-7891                   TCGA-IB-7893 
"DEL PEAK 22(17Q22) WILD-TYPE" "DEL PEAK 22(17Q22) WILD-TYPE" 
                  TCGA-IB-7897                   TCGA-IB-8126 
"DEL PEAK 22(17Q22) WILD-TYPE" "DEL PEAK 22(17Q22) WILD-TYPE" 
                  TCGA-IB-8127                   TCGA-IB-A5SO 
  "DEL PEAK 22(17Q22) MUTATED" "DEL PEAK 22(17Q22) WILD-TYPE" 
                  TCGA-IB-A5SP                   TCGA-IB-A5SQ 
  "DEL PEAK 22(17Q22) MUTATED" "DEL PEAK 22(17Q22) WILD-TYPE" 
                  TCGA-IB-A5SS                   TCGA-IB-A5ST 
"DEL PEAK 22(17Q22) WILD-TYPE" "DEL PEAK 22(17Q22) WILD-TYPE" 
                  TCGA-F2-6879                   TCGA-F2-6880 
  "DEL PEAK 22(17Q22) MUTATED" "DEL PEAK 22(17Q22) WILD-TYPE" 
                  TCGA-F2-7273                   TCGA-F2-7276 
"DEL PEAK 22(17Q22) WILD-TYPE" "DEL PEAK 22(17Q22) WILD-TYPE" 
                  TCGA-F2-A44G                   TCGA-F2-A44H 
"DEL PEAK 22(17Q22) WILD-TYPE" "DEL PEAK 22(17Q22) WILD-TYPE" 
                  TCGA-FB-A4P5                   TCGA-FB-A545 
"DEL PEAK 22(17Q22) WILD-TYPE"   "DEL PEAK 22(17Q22) MUTATED" 
                  TCGA-H6-8124                   TCGA-H6-A45N 
"DEL PEAK 22(17Q22) WILD-TYPE" "DEL PEAK 22(17Q22) WILD-TYPE" 
                  TCGA-HZ-7289                   TCGA-HZ-7918 
  "DEL PEAK 22(17Q22) MUTATED" "DEL PEAK 22(17Q22) WILD-TYPE" 
                  TCGA-HZ-7919                   TCGA-HZ-7922 
  "DEL PEAK 22(17Q22) MUTATED"   "DEL PEAK 22(17Q22) MUTATED" 
                  TCGA-HZ-7923                   TCGA-HZ-7924 
"DEL PEAK 22(17Q22) WILD-TYPE" "DEL PEAK 22(17Q22) WILD-TYPE" 
                  TCGA-HZ-7925                   TCGA-HZ-7926 
"DEL PEAK 22(17Q22) WILD-TYPE" "DEL PEAK 22(17Q22) WILD-TYPE" 
                  TCGA-HZ-8001                   TCGA-HZ-8002 
"DEL PEAK 22(17Q22) WILD-TYPE" "DEL PEAK 22(17Q22) WILD-TYPE" 
                  TCGA-HZ-8003                   TCGA-HZ-8005 
"DEL PEAK 22(17Q22) WILD-TYPE"   "DEL PEAK 22(17Q22) MUTATED" 
                  TCGA-HZ-8315                   TCGA-HZ-8317 
"DEL PEAK 22(17Q22) WILD-TYPE" "DEL PEAK 22(17Q22) WILD-TYPE" 
                  TCGA-HZ-8519                   TCGA-HZ-8636 
"DEL PEAK 22(17Q22) WILD-TYPE"   "DEL PEAK 22(17Q22) MUTATED" 
                  TCGA-HZ-8638                   TCGA-HZ-A49G 
"DEL PEAK 22(17Q22) WILD-TYPE" "DEL PEAK 22(17Q22) WILD-TYPE" 
                  TCGA-HZ-A49H                   TCGA-HZ-A4BH 
"DEL PEAK 22(17Q22) WILD-TYPE"   "DEL PEAK 22(17Q22) MUTATED" 
                  TCGA-HZ-A4BK                   TCGA-IB-7644 
"DEL PEAK 22(17Q22) WILD-TYPE"   "DEL PEAK 22(17Q22) MUTATED" 
                  TCGA-IB-7645                   TCGA-IB-7646 
"DEL PEAK 22(17Q22) WILD-TYPE"   "DEL PEAK 22(17Q22) MUTATED" 
                  TCGA-IB-7647                   TCGA-IB-7649 
"DEL PEAK 22(17Q22) WILD-TYPE" "DEL PEAK 22(17Q22) WILD-TYPE" 
                  TCGA-IB-7651                   TCGA-IB-7652 
"DEL PEAK 22(17Q22) WILD-TYPE"   "DEL PEAK 22(17Q22) MUTATED" 
                  TCGA-IB-7885                   TCGA-IB-7886 
"DEL PEAK 22(17Q22) WILD-TYPE"   "DEL PEAK 22(17Q22) MUTATED" 
                  TCGA-IB-7887                   TCGA-IB-7888 
  "DEL PEAK 22(17Q22) MUTATED"   "DEL PEAK 22(17Q22) MUTATED" 
                  TCGA-IB-7889                   TCGA-IB-7890 
"DEL PEAK 22(17Q22) WILD-TYPE" "DEL PEAK 22(17Q22) WILD-TYPE" 
                  TCGA-IB-7891                   TCGA-IB-7893 
"DEL PEAK 22(17Q22) WILD-TYPE" "DEL PEAK 22(17Q22) WILD-TYPE" 
                  TCGA-IB-7897                   TCGA-IB-8126 
"DEL PEAK 22(17Q22) WILD-TYPE" "DEL PEAK 22(17Q22) WILD-TYPE" 
                  TCGA-IB-8127                   TCGA-IB-A5SO 
  "DEL PEAK 22(17Q22) MUTATED" "DEL PEAK 22(17Q22) WILD-TYPE" 
                  TCGA-IB-A5SP                   TCGA-IB-A5SQ 
  "DEL PEAK 22(17Q22) MUTATED" "DEL PEAK 22(17Q22) WILD-TYPE" 
                  TCGA-IB-A5SS                   TCGA-IB-A5ST 
"DEL PEAK 22(17Q22) WILD-TYPE" "DEL PEAK 22(17Q22) WILD-TYPE" 
[1] "hr=" "1.3"
D39V2, continuous
                              vv
clus                           STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III
  DEL PEAK 22(17Q22) MUTATED          0        0         2        12         0
  DEL PEAK 22(17Q22) WILD-TYPE        2        3         5        29         2
                              vv
clus                           STAGE IV
  DEL PEAK 22(17Q22) MUTATED          2
  DEL PEAK 22(17Q22) WILD-TYPE        0
D39V3, multiclass
                              vv
clus                           T1+T2 T3+T4
  DEL PEAK 22(17Q22) MUTATED       0    16
  DEL PEAK 22(17Q22) WILD-TYPE     6    35
D39V4, multiclass
       clus
vv      DEL PEAK 22(17Q22) MUTATED DEL PEAK 22(17Q22) WILD-TYPE
  T1+T2                          0                            6
  T3+T4                         16                           35
D39V5, binary
                              cls
clus                            0  1
  DEL PEAK 22(17Q22) MUTATED    3 13
  DEL PEAK 22(17Q22) WILD-TYPE 11 30
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 22(17Q22) MUTATED      3   13
  DEL PEAK 22(17Q22) WILD-TYPE   11   30
   clus
vv  DEL PEAK 22(17Q22) MUTATED DEL PEAK 22(17Q22) WILD-TYPE
  0                          3                           11
  1                         13                           30
                              vv
clus                           M0 M1 MX
  DEL PEAK 22(17Q22) MUTATED   10  2  4
  DEL PEAK 22(17Q22) WILD-TYPE 22  0 19
D39V6, multiclass
    clus
vv   DEL PEAK 22(17Q22) MUTATED DEL PEAK 22(17Q22) WILD-TYPE
  M0                         10                           22
  M1                          2                            0
  MX                          4                           19
D39V7, binary
                              cls
clus                            0  1
  DEL PEAK 22(17Q22) MUTATED    8  8
  DEL PEAK 22(17Q22) WILD-TYPE 23 18
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 22(17Q22) MUTATED      8    8
  DEL PEAK 22(17Q22) WILD-TYPE   23   18
        clus
vv       DEL PEAK 22(17Q22) MUTATED DEL PEAK 22(17Q22) WILD-TYPE
  FEMALE                          8                           23
  MALE                            8                           18
                              vv
clus                           PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  DEL PEAK 22(17Q22) MUTATED                                    14
  DEL PEAK 22(17Q22) WILD-TYPE                                  37
                              vv
clus                           PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  DEL PEAK 22(17Q22) MUTATED                                       1
  DEL PEAK 22(17Q22) WILD-TYPE                                     3
                              vv
clus                           PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  DEL PEAK 22(17Q22) MUTATED                                                  0
  DEL PEAK 22(17Q22) WILD-TYPE                                                1
D39V8, multiclass
                                                  clus
vv                                                 DEL PEAK 22(17Q22) MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                      14
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                     1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                          0
                                                  clus
vv                                                 DEL PEAK 22(17Q22) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                        37
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                       3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                            1
D39V9, continuous
D39V10, continuous
                              vv
clus                           R0 R1 RX
  DEL PEAK 22(17Q22) MUTATED    3 11  1
  DEL PEAK 22(17Q22) WILD-TYPE 29 10  1
D39V11, multiclass
    clus
vv   DEL PEAK 22(17Q22) MUTATED DEL PEAK 22(17Q22) WILD-TYPE
  R0                          3                           29
  R1                         11                           10
  RX                          1                            1
D39V12, continuous

Clustering(40) Variable = DEL PEAK 23(18Q12.1) MUTATION ANALYSIS
D40V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 23(18Q12.1) MUTATED   18  9
  DEL PEAK 23(18Q12.1) WILD-TYPE 17 10
  DEL PEAK 23(18Q12.1) MUTATED DEL PEAK 23(18Q12.1) WILD-TYPE 
                            27                             27 
  DEL PEAK 23(18Q12.1) MUTATED DEL PEAK 23(18Q12.1) WILD-TYPE 
                             9                             10 
$`DEL PEAK 23(18Q12.1) MUTATED`
TCGA-F2-6879 TCGA-F2-A44H TCGA-FB-A545 TCGA-H6-8124 TCGA-H6-A45N TCGA-HZ-7289 
       10.98         5.19         0.03        12.89         7.63         7.86 
TCGA-HZ-7919 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8315 TCGA-HZ-8636 
        0.66        12.03         0.26         0.62         0.92         0.16 
TCGA-HZ-A49G TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 
        0.76         5.98         1.51        21.86        15.35        15.65 
TCGA-IB-7885 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-8127 
       27.98        15.78        19.66        16.04         3.85        17.13 
TCGA-IB-A5SO TCGA-IB-A5SQ TCGA-IB-A5SS 
       10.82         7.20        15.12 

$`DEL PEAK 23(18Q12.1) WILD-TYPE`
TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-FB-A4P5 TCGA-HZ-7918 
        9.96        11.84         7.07         5.03         0.13         0.92 
TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8005 
        0.13         0.26        12.13         0.99         0.69         3.91 
TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8638 TCGA-HZ-A49H TCGA-IB-7644 TCGA-IB-7645 
        0.49         0.10         2.96         1.02        11.41        49.38 
TCGA-IB-7646 TCGA-IB-7651 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7897 
        4.77        19.82         4.04         3.58        43.79        15.95 
TCGA-IB-8126 TCGA-IB-A5SP TCGA-IB-A5ST 
        0.56         9.83         0.26 

  DEL PEAK 23(18Q12.1) MUTATED DEL PEAK 23(18Q12.1) WILD-TYPE 
                          0.03                           0.10 
  DEL PEAK 23(18Q12.1) MUTATED DEL PEAK 23(18Q12.1) WILD-TYPE 
                         27.98                          49.38 
  DEL PEAK 23(18Q12.1) MUTATED DEL PEAK 23(18Q12.1) WILD-TYPE 
                          7.86                           3.91 
[1] "0.0 - 28.0 (7.9)" "0.1 - 49.4 (3.9)"
                    TCGA-F2-6879                     TCGA-F2-6880 
  "DEL PEAK 23(18Q12.1) MUTATED" "DEL PEAK 23(18Q12.1) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"DEL PEAK 23(18Q12.1) WILD-TYPE" "DEL PEAK 23(18Q12.1) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
"DEL PEAK 23(18Q12.1) WILD-TYPE"   "DEL PEAK 23(18Q12.1) MUTATED" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"DEL PEAK 23(18Q12.1) WILD-TYPE"   "DEL PEAK 23(18Q12.1) MUTATED" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
  "DEL PEAK 23(18Q12.1) MUTATED"   "DEL PEAK 23(18Q12.1) MUTATED" 
                    TCGA-HZ-7289                     TCGA-HZ-7918 
  "DEL PEAK 23(18Q12.1) MUTATED" "DEL PEAK 23(18Q12.1) WILD-TYPE" 
                    TCGA-HZ-7919                     TCGA-HZ-7922 
  "DEL PEAK 23(18Q12.1) MUTATED" "DEL PEAK 23(18Q12.1) WILD-TYPE" 
                    TCGA-HZ-7923                     TCGA-HZ-7924 
"DEL PEAK 23(18Q12.1) WILD-TYPE" "DEL PEAK 23(18Q12.1) WILD-TYPE" 
                    TCGA-HZ-7925                     TCGA-HZ-7926 
  "DEL PEAK 23(18Q12.1) MUTATED"   "DEL PEAK 23(18Q12.1) MUTATED" 
                    TCGA-HZ-8001                     TCGA-HZ-8002 
  "DEL PEAK 23(18Q12.1) MUTATED" "DEL PEAK 23(18Q12.1) WILD-TYPE" 
                    TCGA-HZ-8003                     TCGA-HZ-8005 
"DEL PEAK 23(18Q12.1) WILD-TYPE" "DEL PEAK 23(18Q12.1) WILD-TYPE" 
                    TCGA-HZ-8315                     TCGA-HZ-8317 
  "DEL PEAK 23(18Q12.1) MUTATED" "DEL PEAK 23(18Q12.1) WILD-TYPE" 
                    TCGA-HZ-8519                     TCGA-HZ-8636 
"DEL PEAK 23(18Q12.1) WILD-TYPE"   "DEL PEAK 23(18Q12.1) MUTATED" 
                    TCGA-HZ-8638                     TCGA-HZ-A49G 
"DEL PEAK 23(18Q12.1) WILD-TYPE"   "DEL PEAK 23(18Q12.1) MUTATED" 
                    TCGA-HZ-A49H                     TCGA-HZ-A4BH 
"DEL PEAK 23(18Q12.1) WILD-TYPE"   "DEL PEAK 23(18Q12.1) MUTATED" 
                    TCGA-HZ-A4BK                     TCGA-IB-7644 
  "DEL PEAK 23(18Q12.1) MUTATED" "DEL PEAK 23(18Q12.1) WILD-TYPE" 
                    TCGA-IB-7645                     TCGA-IB-7646 
"DEL PEAK 23(18Q12.1) WILD-TYPE" "DEL PEAK 23(18Q12.1) WILD-TYPE" 
                    TCGA-IB-7647                     TCGA-IB-7649 
  "DEL PEAK 23(18Q12.1) MUTATED"   "DEL PEAK 23(18Q12.1) MUTATED" 
                    TCGA-IB-7651                     TCGA-IB-7652 
"DEL PEAK 23(18Q12.1) WILD-TYPE"   "DEL PEAK 23(18Q12.1) MUTATED" 
                    TCGA-IB-7885                     TCGA-IB-7886 
  "DEL PEAK 23(18Q12.1) MUTATED" "DEL PEAK 23(18Q12.1) WILD-TYPE" 
                    TCGA-IB-7887                     TCGA-IB-7888 
"DEL PEAK 23(18Q12.1) WILD-TYPE" "DEL PEAK 23(18Q12.1) WILD-TYPE" 
                    TCGA-IB-7889                     TCGA-IB-7890 
  "DEL PEAK 23(18Q12.1) MUTATED"   "DEL PEAK 23(18Q12.1) MUTATED" 
                    TCGA-IB-7891                     TCGA-IB-7893 
  "DEL PEAK 23(18Q12.1) MUTATED"   "DEL PEAK 23(18Q12.1) MUTATED" 
                    TCGA-IB-7897                     TCGA-IB-8126 
"DEL PEAK 23(18Q12.1) WILD-TYPE" "DEL PEAK 23(18Q12.1) WILD-TYPE" 
                    TCGA-IB-8127                     TCGA-IB-A5SO 
  "DEL PEAK 23(18Q12.1) MUTATED"   "DEL PEAK 23(18Q12.1) MUTATED" 
                    TCGA-IB-A5SP                     TCGA-IB-A5SQ 
"DEL PEAK 23(18Q12.1) WILD-TYPE"   "DEL PEAK 23(18Q12.1) MUTATED" 
                    TCGA-IB-A5SS                     TCGA-IB-A5ST 
  "DEL PEAK 23(18Q12.1) MUTATED" "DEL PEAK 23(18Q12.1) WILD-TYPE" 
                    TCGA-F2-6879                     TCGA-F2-6880 
  "DEL PEAK 23(18Q12.1) MUTATED" "DEL PEAK 23(18Q12.1) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"DEL PEAK 23(18Q12.1) WILD-TYPE" "DEL PEAK 23(18Q12.1) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
"DEL PEAK 23(18Q12.1) WILD-TYPE"   "DEL PEAK 23(18Q12.1) MUTATED" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"DEL PEAK 23(18Q12.1) WILD-TYPE"   "DEL PEAK 23(18Q12.1) MUTATED" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
  "DEL PEAK 23(18Q12.1) MUTATED"   "DEL PEAK 23(18Q12.1) MUTATED" 
                    TCGA-HZ-7289                     TCGA-HZ-7918 
  "DEL PEAK 23(18Q12.1) MUTATED" "DEL PEAK 23(18Q12.1) WILD-TYPE" 
                    TCGA-HZ-7919                     TCGA-HZ-7922 
  "DEL PEAK 23(18Q12.1) MUTATED" "DEL PEAK 23(18Q12.1) WILD-TYPE" 
                    TCGA-HZ-7923                     TCGA-HZ-7924 
"DEL PEAK 23(18Q12.1) WILD-TYPE" "DEL PEAK 23(18Q12.1) WILD-TYPE" 
                    TCGA-HZ-7925                     TCGA-HZ-7926 
  "DEL PEAK 23(18Q12.1) MUTATED"   "DEL PEAK 23(18Q12.1) MUTATED" 
                    TCGA-HZ-8001                     TCGA-HZ-8002 
  "DEL PEAK 23(18Q12.1) MUTATED" "DEL PEAK 23(18Q12.1) WILD-TYPE" 
                    TCGA-HZ-8003                     TCGA-HZ-8005 
"DEL PEAK 23(18Q12.1) WILD-TYPE" "DEL PEAK 23(18Q12.1) WILD-TYPE" 
                    TCGA-HZ-8315                     TCGA-HZ-8317 
  "DEL PEAK 23(18Q12.1) MUTATED" "DEL PEAK 23(18Q12.1) WILD-TYPE" 
                    TCGA-HZ-8519                     TCGA-HZ-8636 
"DEL PEAK 23(18Q12.1) WILD-TYPE"   "DEL PEAK 23(18Q12.1) MUTATED" 
                    TCGA-HZ-8638                     TCGA-HZ-A49G 
"DEL PEAK 23(18Q12.1) WILD-TYPE"   "DEL PEAK 23(18Q12.1) MUTATED" 
                    TCGA-HZ-A49H                     TCGA-HZ-A4BH 
"DEL PEAK 23(18Q12.1) WILD-TYPE"   "DEL PEAK 23(18Q12.1) MUTATED" 
                    TCGA-HZ-A4BK                     TCGA-IB-7644 
  "DEL PEAK 23(18Q12.1) MUTATED" "DEL PEAK 23(18Q12.1) WILD-TYPE" 
                    TCGA-IB-7645                     TCGA-IB-7646 
"DEL PEAK 23(18Q12.1) WILD-TYPE" "DEL PEAK 23(18Q12.1) WILD-TYPE" 
                    TCGA-IB-7647                     TCGA-IB-7649 
  "DEL PEAK 23(18Q12.1) MUTATED"   "DEL PEAK 23(18Q12.1) MUTATED" 
                    TCGA-IB-7651                     TCGA-IB-7652 
"DEL PEAK 23(18Q12.1) WILD-TYPE"   "DEL PEAK 23(18Q12.1) MUTATED" 
                    TCGA-IB-7885                     TCGA-IB-7886 
  "DEL PEAK 23(18Q12.1) MUTATED" "DEL PEAK 23(18Q12.1) WILD-TYPE" 
                    TCGA-IB-7887                     TCGA-IB-7888 
"DEL PEAK 23(18Q12.1) WILD-TYPE" "DEL PEAK 23(18Q12.1) WILD-TYPE" 
                    TCGA-IB-7889                     TCGA-IB-7890 
  "DEL PEAK 23(18Q12.1) MUTATED"   "DEL PEAK 23(18Q12.1) MUTATED" 
                    TCGA-IB-7891                     TCGA-IB-7893 
  "DEL PEAK 23(18Q12.1) MUTATED"   "DEL PEAK 23(18Q12.1) MUTATED" 
                    TCGA-IB-7897                     TCGA-IB-8126 
"DEL PEAK 23(18Q12.1) WILD-TYPE" "DEL PEAK 23(18Q12.1) WILD-TYPE" 
                    TCGA-IB-8127                     TCGA-IB-A5SO 
  "DEL PEAK 23(18Q12.1) MUTATED"   "DEL PEAK 23(18Q12.1) MUTATED" 
                    TCGA-IB-A5SP                     TCGA-IB-A5SQ 
"DEL PEAK 23(18Q12.1) WILD-TYPE"   "DEL PEAK 23(18Q12.1) MUTATED" 
                    TCGA-IB-A5SS                     TCGA-IB-A5ST 
  "DEL PEAK 23(18Q12.1) MUTATED" "DEL PEAK 23(18Q12.1) WILD-TYPE" 
                    TCGA-F2-6879                     TCGA-F2-6880 
  "DEL PEAK 23(18Q12.1) MUTATED" "DEL PEAK 23(18Q12.1) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"DEL PEAK 23(18Q12.1) WILD-TYPE" "DEL PEAK 23(18Q12.1) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
"DEL PEAK 23(18Q12.1) WILD-TYPE"   "DEL PEAK 23(18Q12.1) MUTATED" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"DEL PEAK 23(18Q12.1) WILD-TYPE"   "DEL PEAK 23(18Q12.1) MUTATED" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
  "DEL PEAK 23(18Q12.1) MUTATED"   "DEL PEAK 23(18Q12.1) MUTATED" 
                    TCGA-HZ-7289                     TCGA-HZ-7918 
  "DEL PEAK 23(18Q12.1) MUTATED" "DEL PEAK 23(18Q12.1) WILD-TYPE" 
                    TCGA-HZ-7919                     TCGA-HZ-7922 
  "DEL PEAK 23(18Q12.1) MUTATED" "DEL PEAK 23(18Q12.1) WILD-TYPE" 
                    TCGA-HZ-7923                     TCGA-HZ-7924 
"DEL PEAK 23(18Q12.1) WILD-TYPE" "DEL PEAK 23(18Q12.1) WILD-TYPE" 
                    TCGA-HZ-7925                     TCGA-HZ-7926 
  "DEL PEAK 23(18Q12.1) MUTATED"   "DEL PEAK 23(18Q12.1) MUTATED" 
                    TCGA-HZ-8001                     TCGA-HZ-8002 
  "DEL PEAK 23(18Q12.1) MUTATED" "DEL PEAK 23(18Q12.1) WILD-TYPE" 
                    TCGA-HZ-8003                     TCGA-HZ-8005 
"DEL PEAK 23(18Q12.1) WILD-TYPE" "DEL PEAK 23(18Q12.1) WILD-TYPE" 
                    TCGA-HZ-8315                     TCGA-HZ-8317 
  "DEL PEAK 23(18Q12.1) MUTATED" "DEL PEAK 23(18Q12.1) WILD-TYPE" 
                    TCGA-HZ-8519                     TCGA-HZ-8636 
"DEL PEAK 23(18Q12.1) WILD-TYPE"   "DEL PEAK 23(18Q12.1) MUTATED" 
                    TCGA-HZ-8638                     TCGA-HZ-A49G 
"DEL PEAK 23(18Q12.1) WILD-TYPE"   "DEL PEAK 23(18Q12.1) MUTATED" 
                    TCGA-HZ-A49H                     TCGA-HZ-A4BH 
"DEL PEAK 23(18Q12.1) WILD-TYPE"   "DEL PEAK 23(18Q12.1) MUTATED" 
                    TCGA-HZ-A4BK                     TCGA-IB-7644 
  "DEL PEAK 23(18Q12.1) MUTATED" "DEL PEAK 23(18Q12.1) WILD-TYPE" 
                    TCGA-IB-7645                     TCGA-IB-7646 
"DEL PEAK 23(18Q12.1) WILD-TYPE" "DEL PEAK 23(18Q12.1) WILD-TYPE" 
                    TCGA-IB-7647                     TCGA-IB-7649 
  "DEL PEAK 23(18Q12.1) MUTATED"   "DEL PEAK 23(18Q12.1) MUTATED" 
                    TCGA-IB-7651                     TCGA-IB-7652 
"DEL PEAK 23(18Q12.1) WILD-TYPE"   "DEL PEAK 23(18Q12.1) MUTATED" 
                    TCGA-IB-7885                     TCGA-IB-7886 
  "DEL PEAK 23(18Q12.1) MUTATED" "DEL PEAK 23(18Q12.1) WILD-TYPE" 
                    TCGA-IB-7887                     TCGA-IB-7888 
"DEL PEAK 23(18Q12.1) WILD-TYPE" "DEL PEAK 23(18Q12.1) WILD-TYPE" 
                    TCGA-IB-7889                     TCGA-IB-7890 
  "DEL PEAK 23(18Q12.1) MUTATED"   "DEL PEAK 23(18Q12.1) MUTATED" 
                    TCGA-IB-7891                     TCGA-IB-7893 
  "DEL PEAK 23(18Q12.1) MUTATED"   "DEL PEAK 23(18Q12.1) MUTATED" 
                    TCGA-IB-7897                     TCGA-IB-8126 
"DEL PEAK 23(18Q12.1) WILD-TYPE" "DEL PEAK 23(18Q12.1) WILD-TYPE" 
                    TCGA-IB-8127                     TCGA-IB-A5SO 
  "DEL PEAK 23(18Q12.1) MUTATED"   "DEL PEAK 23(18Q12.1) MUTATED" 
                    TCGA-IB-A5SP                     TCGA-IB-A5SQ 
"DEL PEAK 23(18Q12.1) WILD-TYPE"   "DEL PEAK 23(18Q12.1) MUTATED" 
                    TCGA-IB-A5SS                     TCGA-IB-A5ST 
  "DEL PEAK 23(18Q12.1) MUTATED" "DEL PEAK 23(18Q12.1) WILD-TYPE" 
[1] "hr=" "1.3"
D40V2, continuous
                                vv
clus                             STAGE IA STAGE IB STAGE IIA STAGE IIB
  DEL PEAK 23(18Q12.1) MUTATED          0        2         3        22
  DEL PEAK 23(18Q12.1) WILD-TYPE        2        1         4        19
                                vv
clus                             STAGE III STAGE IV
  DEL PEAK 23(18Q12.1) MUTATED           1        1
  DEL PEAK 23(18Q12.1) WILD-TYPE         1        1
D40V3, multiclass
                                vv
clus                             T1+T2 T3+T4
  DEL PEAK 23(18Q12.1) MUTATED       3    26
  DEL PEAK 23(18Q12.1) WILD-TYPE     3    25
D40V4, multiclass
       clus
vv      DEL PEAK 23(18Q12.1) MUTATED DEL PEAK 23(18Q12.1) WILD-TYPE
  T1+T2                            3                              3
  T3+T4                           26                             25
D40V5, binary
                                cls
clus                              0  1
  DEL PEAK 23(18Q12.1) MUTATED    7 22
  DEL PEAK 23(18Q12.1) WILD-TYPE  7 21
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 23(18Q12.1) MUTATED      7   22
  DEL PEAK 23(18Q12.1) WILD-TYPE    7   21
   clus
vv  DEL PEAK 23(18Q12.1) MUTATED DEL PEAK 23(18Q12.1) WILD-TYPE
  0                            7                              7
  1                           22                             21
                                vv
clus                             M0 M1 MX
  DEL PEAK 23(18Q12.1) MUTATED   17  1 11
  DEL PEAK 23(18Q12.1) WILD-TYPE 15  1 12
D40V6, multiclass
    clus
vv   DEL PEAK 23(18Q12.1) MUTATED DEL PEAK 23(18Q12.1) WILD-TYPE
  M0                           17                             15
  M1                            1                              1
  MX                           11                             12
D40V7, binary
                                cls
clus                              0  1
  DEL PEAK 23(18Q12.1) MUTATED   15 14
  DEL PEAK 23(18Q12.1) WILD-TYPE 16 12
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 23(18Q12.1) MUTATED     15   14
  DEL PEAK 23(18Q12.1) WILD-TYPE   16   12
        clus
vv       DEL PEAK 23(18Q12.1) MUTATED DEL PEAK 23(18Q12.1) WILD-TYPE
  FEMALE                           15                             16
  MALE                             14                             12
                                vv
clus                             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  DEL PEAK 23(18Q12.1) MUTATED                                    25
  DEL PEAK 23(18Q12.1) WILD-TYPE                                  26
                                vv
clus                             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  DEL PEAK 23(18Q12.1) MUTATED                                       3
  DEL PEAK 23(18Q12.1) WILD-TYPE                                     1
                                vv
clus                             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  DEL PEAK 23(18Q12.1) MUTATED                                                  0
  DEL PEAK 23(18Q12.1) WILD-TYPE                                                1
D40V8, multiclass
                                                  clus
vv                                                 DEL PEAK 23(18Q12.1) MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                        25
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                       3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                            0
                                                  clus
vv                                                 DEL PEAK 23(18Q12.1) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                          26
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                         1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                              1
D40V9, continuous
D40V10, continuous
                                vv
clus                             R0 R1 RX
  DEL PEAK 23(18Q12.1) MUTATED   14 11  2
  DEL PEAK 23(18Q12.1) WILD-TYPE 18 10  0
D40V11, multiclass
    clus
vv   DEL PEAK 23(18Q12.1) MUTATED DEL PEAK 23(18Q12.1) WILD-TYPE
  R0                           14                             18
  R1                           11                             10
  RX                            2                              0
D40V12, continuous

Clustering(41) Variable = DEL PEAK 24(18Q21.2) MUTATION ANALYSIS
D41V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 24(18Q21.2) MUTATED   23 12
  DEL PEAK 24(18Q21.2) WILD-TYPE 12  7
  DEL PEAK 24(18Q21.2) MUTATED DEL PEAK 24(18Q21.2) WILD-TYPE 
                            35                             19 
  DEL PEAK 24(18Q21.2) MUTATED DEL PEAK 24(18Q21.2) WILD-TYPE 
                            12                              7 
$`DEL PEAK 24(18Q21.2) MUTATED`
TCGA-F2-6879 TCGA-F2-A44G TCGA-F2-A44H TCGA-FB-A545 TCGA-H6-8124 TCGA-H6-A45N 
       10.98         5.03         5.19         0.03        12.89         7.63 
TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 
        7.86         0.92         0.66        12.03         0.26         0.62 
TCGA-HZ-8005 TCGA-HZ-8315 TCGA-HZ-8636 TCGA-HZ-A49G TCGA-HZ-A4BH TCGA-HZ-A4BK 
        3.91         0.92         0.16         0.76         5.98         1.51 
TCGA-IB-7644 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 
       11.41        21.86        15.35        15.65        27.98         4.04 
TCGA-IB-7887 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-8126 
        3.58        15.78        19.66        16.04         3.85         0.56 
TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS 
       17.13        10.82         9.83         7.20        15.12 

$`DEL PEAK 24(18Q21.2) WILD-TYPE`
TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-FB-A4P5 TCGA-HZ-7922 TCGA-HZ-7923 
        9.96        11.84         7.07         0.13         0.13         0.26 
TCGA-HZ-7924 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8638 
       12.13         0.99         0.69         0.49         0.10         2.96 
TCGA-HZ-A49H TCGA-IB-7645 TCGA-IB-7646 TCGA-IB-7651 TCGA-IB-7888 TCGA-IB-7897 
        1.02        49.38         4.77        19.82        43.79        15.95 
TCGA-IB-A5ST 
        0.26 

  DEL PEAK 24(18Q21.2) MUTATED DEL PEAK 24(18Q21.2) WILD-TYPE 
                          0.03                           0.10 
  DEL PEAK 24(18Q21.2) MUTATED DEL PEAK 24(18Q21.2) WILD-TYPE 
                         27.98                          49.38 
  DEL PEAK 24(18Q21.2) MUTATED DEL PEAK 24(18Q21.2) WILD-TYPE 
                          7.20                           2.96 
[1] "0.0 - 28.0 (7.2)" "0.1 - 49.4 (3.0)"
                    TCGA-F2-6879                     TCGA-F2-6880 
  "DEL PEAK 24(18Q21.2) MUTATED" "DEL PEAK 24(18Q21.2) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"DEL PEAK 24(18Q21.2) WILD-TYPE" "DEL PEAK 24(18Q21.2) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
  "DEL PEAK 24(18Q21.2) MUTATED"   "DEL PEAK 24(18Q21.2) MUTATED" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"DEL PEAK 24(18Q21.2) WILD-TYPE"   "DEL PEAK 24(18Q21.2) MUTATED" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
  "DEL PEAK 24(18Q21.2) MUTATED"   "DEL PEAK 24(18Q21.2) MUTATED" 
                    TCGA-HZ-7289                     TCGA-HZ-7918 
  "DEL PEAK 24(18Q21.2) MUTATED"   "DEL PEAK 24(18Q21.2) MUTATED" 
                    TCGA-HZ-7919                     TCGA-HZ-7922 
  "DEL PEAK 24(18Q21.2) MUTATED" "DEL PEAK 24(18Q21.2) WILD-TYPE" 
                    TCGA-HZ-7923                     TCGA-HZ-7924 
"DEL PEAK 24(18Q21.2) WILD-TYPE" "DEL PEAK 24(18Q21.2) WILD-TYPE" 
                    TCGA-HZ-7925                     TCGA-HZ-7926 
  "DEL PEAK 24(18Q21.2) MUTATED"   "DEL PEAK 24(18Q21.2) MUTATED" 
                    TCGA-HZ-8001                     TCGA-HZ-8002 
  "DEL PEAK 24(18Q21.2) MUTATED" "DEL PEAK 24(18Q21.2) WILD-TYPE" 
                    TCGA-HZ-8003                     TCGA-HZ-8005 
"DEL PEAK 24(18Q21.2) WILD-TYPE"   "DEL PEAK 24(18Q21.2) MUTATED" 
                    TCGA-HZ-8315                     TCGA-HZ-8317 
  "DEL PEAK 24(18Q21.2) MUTATED" "DEL PEAK 24(18Q21.2) WILD-TYPE" 
                    TCGA-HZ-8519                     TCGA-HZ-8636 
"DEL PEAK 24(18Q21.2) WILD-TYPE"   "DEL PEAK 24(18Q21.2) MUTATED" 
                    TCGA-HZ-8638                     TCGA-HZ-A49G 
"DEL PEAK 24(18Q21.2) WILD-TYPE"   "DEL PEAK 24(18Q21.2) MUTATED" 
                    TCGA-HZ-A49H                     TCGA-HZ-A4BH 
"DEL PEAK 24(18Q21.2) WILD-TYPE"   "DEL PEAK 24(18Q21.2) MUTATED" 
                    TCGA-HZ-A4BK                     TCGA-IB-7644 
  "DEL PEAK 24(18Q21.2) MUTATED"   "DEL PEAK 24(18Q21.2) MUTATED" 
                    TCGA-IB-7645                     TCGA-IB-7646 
"DEL PEAK 24(18Q21.2) WILD-TYPE" "DEL PEAK 24(18Q21.2) WILD-TYPE" 
                    TCGA-IB-7647                     TCGA-IB-7649 
  "DEL PEAK 24(18Q21.2) MUTATED"   "DEL PEAK 24(18Q21.2) MUTATED" 
                    TCGA-IB-7651                     TCGA-IB-7652 
"DEL PEAK 24(18Q21.2) WILD-TYPE"   "DEL PEAK 24(18Q21.2) MUTATED" 
                    TCGA-IB-7885                     TCGA-IB-7886 
  "DEL PEAK 24(18Q21.2) MUTATED"   "DEL PEAK 24(18Q21.2) MUTATED" 
                    TCGA-IB-7887                     TCGA-IB-7888 
  "DEL PEAK 24(18Q21.2) MUTATED" "DEL PEAK 24(18Q21.2) WILD-TYPE" 
                    TCGA-IB-7889                     TCGA-IB-7890 
  "DEL PEAK 24(18Q21.2) MUTATED"   "DEL PEAK 24(18Q21.2) MUTATED" 
                    TCGA-IB-7891                     TCGA-IB-7893 
  "DEL PEAK 24(18Q21.2) MUTATED"   "DEL PEAK 24(18Q21.2) MUTATED" 
                    TCGA-IB-7897                     TCGA-IB-8126 
"DEL PEAK 24(18Q21.2) WILD-TYPE"   "DEL PEAK 24(18Q21.2) MUTATED" 
                    TCGA-IB-8127                     TCGA-IB-A5SO 
  "DEL PEAK 24(18Q21.2) MUTATED"   "DEL PEAK 24(18Q21.2) MUTATED" 
                    TCGA-IB-A5SP                     TCGA-IB-A5SQ 
  "DEL PEAK 24(18Q21.2) MUTATED"   "DEL PEAK 24(18Q21.2) MUTATED" 
                    TCGA-IB-A5SS                     TCGA-IB-A5ST 
  "DEL PEAK 24(18Q21.2) MUTATED" "DEL PEAK 24(18Q21.2) WILD-TYPE" 
                    TCGA-F2-6879                     TCGA-F2-6880 
  "DEL PEAK 24(18Q21.2) MUTATED" "DEL PEAK 24(18Q21.2) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"DEL PEAK 24(18Q21.2) WILD-TYPE" "DEL PEAK 24(18Q21.2) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
  "DEL PEAK 24(18Q21.2) MUTATED"   "DEL PEAK 24(18Q21.2) MUTATED" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"DEL PEAK 24(18Q21.2) WILD-TYPE"   "DEL PEAK 24(18Q21.2) MUTATED" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
  "DEL PEAK 24(18Q21.2) MUTATED"   "DEL PEAK 24(18Q21.2) MUTATED" 
                    TCGA-HZ-7289                     TCGA-HZ-7918 
  "DEL PEAK 24(18Q21.2) MUTATED"   "DEL PEAK 24(18Q21.2) MUTATED" 
                    TCGA-HZ-7919                     TCGA-HZ-7922 
  "DEL PEAK 24(18Q21.2) MUTATED" "DEL PEAK 24(18Q21.2) WILD-TYPE" 
                    TCGA-HZ-7923                     TCGA-HZ-7924 
"DEL PEAK 24(18Q21.2) WILD-TYPE" "DEL PEAK 24(18Q21.2) WILD-TYPE" 
                    TCGA-HZ-7925                     TCGA-HZ-7926 
  "DEL PEAK 24(18Q21.2) MUTATED"   "DEL PEAK 24(18Q21.2) MUTATED" 
                    TCGA-HZ-8001                     TCGA-HZ-8002 
  "DEL PEAK 24(18Q21.2) MUTATED" "DEL PEAK 24(18Q21.2) WILD-TYPE" 
                    TCGA-HZ-8003                     TCGA-HZ-8005 
"DEL PEAK 24(18Q21.2) WILD-TYPE"   "DEL PEAK 24(18Q21.2) MUTATED" 
                    TCGA-HZ-8315                     TCGA-HZ-8317 
  "DEL PEAK 24(18Q21.2) MUTATED" "DEL PEAK 24(18Q21.2) WILD-TYPE" 
                    TCGA-HZ-8519                     TCGA-HZ-8636 
"DEL PEAK 24(18Q21.2) WILD-TYPE"   "DEL PEAK 24(18Q21.2) MUTATED" 
                    TCGA-HZ-8638                     TCGA-HZ-A49G 
"DEL PEAK 24(18Q21.2) WILD-TYPE"   "DEL PEAK 24(18Q21.2) MUTATED" 
                    TCGA-HZ-A49H                     TCGA-HZ-A4BH 
"DEL PEAK 24(18Q21.2) WILD-TYPE"   "DEL PEAK 24(18Q21.2) MUTATED" 
                    TCGA-HZ-A4BK                     TCGA-IB-7644 
  "DEL PEAK 24(18Q21.2) MUTATED"   "DEL PEAK 24(18Q21.2) MUTATED" 
                    TCGA-IB-7645                     TCGA-IB-7646 
"DEL PEAK 24(18Q21.2) WILD-TYPE" "DEL PEAK 24(18Q21.2) WILD-TYPE" 
                    TCGA-IB-7647                     TCGA-IB-7649 
  "DEL PEAK 24(18Q21.2) MUTATED"   "DEL PEAK 24(18Q21.2) MUTATED" 
                    TCGA-IB-7651                     TCGA-IB-7652 
"DEL PEAK 24(18Q21.2) WILD-TYPE"   "DEL PEAK 24(18Q21.2) MUTATED" 
                    TCGA-IB-7885                     TCGA-IB-7886 
  "DEL PEAK 24(18Q21.2) MUTATED"   "DEL PEAK 24(18Q21.2) MUTATED" 
                    TCGA-IB-7887                     TCGA-IB-7888 
  "DEL PEAK 24(18Q21.2) MUTATED" "DEL PEAK 24(18Q21.2) WILD-TYPE" 
                    TCGA-IB-7889                     TCGA-IB-7890 
  "DEL PEAK 24(18Q21.2) MUTATED"   "DEL PEAK 24(18Q21.2) MUTATED" 
                    TCGA-IB-7891                     TCGA-IB-7893 
  "DEL PEAK 24(18Q21.2) MUTATED"   "DEL PEAK 24(18Q21.2) MUTATED" 
                    TCGA-IB-7897                     TCGA-IB-8126 
"DEL PEAK 24(18Q21.2) WILD-TYPE"   "DEL PEAK 24(18Q21.2) MUTATED" 
                    TCGA-IB-8127                     TCGA-IB-A5SO 
  "DEL PEAK 24(18Q21.2) MUTATED"   "DEL PEAK 24(18Q21.2) MUTATED" 
                    TCGA-IB-A5SP                     TCGA-IB-A5SQ 
  "DEL PEAK 24(18Q21.2) MUTATED"   "DEL PEAK 24(18Q21.2) MUTATED" 
                    TCGA-IB-A5SS                     TCGA-IB-A5ST 
  "DEL PEAK 24(18Q21.2) MUTATED" "DEL PEAK 24(18Q21.2) WILD-TYPE" 
                    TCGA-F2-6879                     TCGA-F2-6880 
  "DEL PEAK 24(18Q21.2) MUTATED" "DEL PEAK 24(18Q21.2) WILD-TYPE" 
                    TCGA-F2-7273                     TCGA-F2-7276 
"DEL PEAK 24(18Q21.2) WILD-TYPE" "DEL PEAK 24(18Q21.2) WILD-TYPE" 
                    TCGA-F2-A44G                     TCGA-F2-A44H 
  "DEL PEAK 24(18Q21.2) MUTATED"   "DEL PEAK 24(18Q21.2) MUTATED" 
                    TCGA-FB-A4P5                     TCGA-FB-A545 
"DEL PEAK 24(18Q21.2) WILD-TYPE"   "DEL PEAK 24(18Q21.2) MUTATED" 
                    TCGA-H6-8124                     TCGA-H6-A45N 
  "DEL PEAK 24(18Q21.2) MUTATED"   "DEL PEAK 24(18Q21.2) MUTATED" 
                    TCGA-HZ-7289                     TCGA-HZ-7918 
  "DEL PEAK 24(18Q21.2) MUTATED"   "DEL PEAK 24(18Q21.2) MUTATED" 
                    TCGA-HZ-7919                     TCGA-HZ-7922 
  "DEL PEAK 24(18Q21.2) MUTATED" "DEL PEAK 24(18Q21.2) WILD-TYPE" 
                    TCGA-HZ-7923                     TCGA-HZ-7924 
"DEL PEAK 24(18Q21.2) WILD-TYPE" "DEL PEAK 24(18Q21.2) WILD-TYPE" 
                    TCGA-HZ-7925                     TCGA-HZ-7926 
  "DEL PEAK 24(18Q21.2) MUTATED"   "DEL PEAK 24(18Q21.2) MUTATED" 
                    TCGA-HZ-8001                     TCGA-HZ-8002 
  "DEL PEAK 24(18Q21.2) MUTATED" "DEL PEAK 24(18Q21.2) WILD-TYPE" 
                    TCGA-HZ-8003                     TCGA-HZ-8005 
"DEL PEAK 24(18Q21.2) WILD-TYPE"   "DEL PEAK 24(18Q21.2) MUTATED" 
                    TCGA-HZ-8315                     TCGA-HZ-8317 
  "DEL PEAK 24(18Q21.2) MUTATED" "DEL PEAK 24(18Q21.2) WILD-TYPE" 
                    TCGA-HZ-8519                     TCGA-HZ-8636 
"DEL PEAK 24(18Q21.2) WILD-TYPE"   "DEL PEAK 24(18Q21.2) MUTATED" 
                    TCGA-HZ-8638                     TCGA-HZ-A49G 
"DEL PEAK 24(18Q21.2) WILD-TYPE"   "DEL PEAK 24(18Q21.2) MUTATED" 
                    TCGA-HZ-A49H                     TCGA-HZ-A4BH 
"DEL PEAK 24(18Q21.2) WILD-TYPE"   "DEL PEAK 24(18Q21.2) MUTATED" 
                    TCGA-HZ-A4BK                     TCGA-IB-7644 
  "DEL PEAK 24(18Q21.2) MUTATED"   "DEL PEAK 24(18Q21.2) MUTATED" 
                    TCGA-IB-7645                     TCGA-IB-7646 
"DEL PEAK 24(18Q21.2) WILD-TYPE" "DEL PEAK 24(18Q21.2) WILD-TYPE" 
                    TCGA-IB-7647                     TCGA-IB-7649 
  "DEL PEAK 24(18Q21.2) MUTATED"   "DEL PEAK 24(18Q21.2) MUTATED" 
                    TCGA-IB-7651                     TCGA-IB-7652 
"DEL PEAK 24(18Q21.2) WILD-TYPE"   "DEL PEAK 24(18Q21.2) MUTATED" 
                    TCGA-IB-7885                     TCGA-IB-7886 
  "DEL PEAK 24(18Q21.2) MUTATED"   "DEL PEAK 24(18Q21.2) MUTATED" 
                    TCGA-IB-7887                     TCGA-IB-7888 
  "DEL PEAK 24(18Q21.2) MUTATED" "DEL PEAK 24(18Q21.2) WILD-TYPE" 
                    TCGA-IB-7889                     TCGA-IB-7890 
  "DEL PEAK 24(18Q21.2) MUTATED"   "DEL PEAK 24(18Q21.2) MUTATED" 
                    TCGA-IB-7891                     TCGA-IB-7893 
  "DEL PEAK 24(18Q21.2) MUTATED"   "DEL PEAK 24(18Q21.2) MUTATED" 
                    TCGA-IB-7897                     TCGA-IB-8126 
"DEL PEAK 24(18Q21.2) WILD-TYPE"   "DEL PEAK 24(18Q21.2) MUTATED" 
                    TCGA-IB-8127                     TCGA-IB-A5SO 
  "DEL PEAK 24(18Q21.2) MUTATED"   "DEL PEAK 24(18Q21.2) MUTATED" 
                    TCGA-IB-A5SP                     TCGA-IB-A5SQ 
  "DEL PEAK 24(18Q21.2) MUTATED"   "DEL PEAK 24(18Q21.2) MUTATED" 
                    TCGA-IB-A5SS                     TCGA-IB-A5ST 
  "DEL PEAK 24(18Q21.2) MUTATED" "DEL PEAK 24(18Q21.2) WILD-TYPE" 
[1] "hr=" "1.3"
D41V2, continuous
                                vv
clus                             STAGE IA STAGE IB STAGE IIA STAGE IIB
  DEL PEAK 24(18Q21.2) MUTATED          0        2         4        27
  DEL PEAK 24(18Q21.2) WILD-TYPE        2        1         3        14
                                vv
clus                             STAGE III STAGE IV
  DEL PEAK 24(18Q21.2) MUTATED           2        2
  DEL PEAK 24(18Q21.2) WILD-TYPE         0        0
D41V3, multiclass
                                vv
clus                             T1+T2 T3+T4
  DEL PEAK 24(18Q21.2) MUTATED       3    34
  DEL PEAK 24(18Q21.2) WILD-TYPE     3    17
D41V4, multiclass
       clus
vv      DEL PEAK 24(18Q21.2) MUTATED DEL PEAK 24(18Q21.2) WILD-TYPE
  T1+T2                            3                              3
  T3+T4                           34                             17
D41V5, binary
                                cls
clus                              0  1
  DEL PEAK 24(18Q21.2) MUTATED    8 29
  DEL PEAK 24(18Q21.2) WILD-TYPE  6 14
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 24(18Q21.2) MUTATED      8   29
  DEL PEAK 24(18Q21.2) WILD-TYPE    6   14
   clus
vv  DEL PEAK 24(18Q21.2) MUTATED DEL PEAK 24(18Q21.2) WILD-TYPE
  0                            8                              6
  1                           29                             14
                                vv
clus                             M0 M1 MX
  DEL PEAK 24(18Q21.2) MUTATED   23  2 12
  DEL PEAK 24(18Q21.2) WILD-TYPE  9  0 11
D41V6, multiclass
    clus
vv   DEL PEAK 24(18Q21.2) MUTATED DEL PEAK 24(18Q21.2) WILD-TYPE
  M0                           23                              9
  M1                            2                              0
  MX                           12                             11
D41V7, binary
                                cls
clus                              0  1
  DEL PEAK 24(18Q21.2) MUTATED   19 18
  DEL PEAK 24(18Q21.2) WILD-TYPE 12  8
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 24(18Q21.2) MUTATED     19   18
  DEL PEAK 24(18Q21.2) WILD-TYPE   12    8
        clus
vv       DEL PEAK 24(18Q21.2) MUTATED DEL PEAK 24(18Q21.2) WILD-TYPE
  FEMALE                           19                             12
  MALE                             18                              8
                                vv
clus                             PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  DEL PEAK 24(18Q21.2) MUTATED                                    33
  DEL PEAK 24(18Q21.2) WILD-TYPE                                  18
                                vv
clus                             PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  DEL PEAK 24(18Q21.2) MUTATED                                       3
  DEL PEAK 24(18Q21.2) WILD-TYPE                                     1
                                vv
clus                             PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  DEL PEAK 24(18Q21.2) MUTATED                                                  0
  DEL PEAK 24(18Q21.2) WILD-TYPE                                                1
D41V8, multiclass
                                                  clus
vv                                                 DEL PEAK 24(18Q21.2) MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                        33
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                       3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                            0
                                                  clus
vv                                                 DEL PEAK 24(18Q21.2) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                          18
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                         1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                              1
D41V9, continuous
D41V10, continuous
[1] "Remove cluster labels:"         "DEL PEAK 24(18Q21.2) WILD-TYPE"
clus
  DEL PEAK 24(18Q21.2) MUTATED DEL PEAK 24(18Q21.2) WILD-TYPE 
                             9                              2 
                  TCGA-H6-8124                   TCGA-IB-7644 
"DEL PEAK 24(18Q21.2) MUTATED" "DEL PEAK 24(18Q21.2) MUTATED" 
                  TCGA-IB-7649                   TCGA-IB-7885 
"DEL PEAK 24(18Q21.2) MUTATED" "DEL PEAK 24(18Q21.2) MUTATED" 
                  TCGA-IB-7886                   TCGA-IB-7891 
"DEL PEAK 24(18Q21.2) MUTATED" "DEL PEAK 24(18Q21.2) MUTATED" 
                  TCGA-IB-8126                   TCGA-IB-8127 
"DEL PEAK 24(18Q21.2) MUTATED" "DEL PEAK 24(18Q21.2) MUTATED" 
                  TCGA-IB-A5SS 
"DEL PEAK 24(18Q21.2) MUTATED" 
                                vv
clus                             R0 R1 RX
  DEL PEAK 24(18Q21.2) MUTATED   15 18  2
  DEL PEAK 24(18Q21.2) WILD-TYPE 17  3  0
D41V11, multiclass
    clus
vv   DEL PEAK 24(18Q21.2) MUTATED DEL PEAK 24(18Q21.2) WILD-TYPE
  R0                           15                             17
  R1                           18                              3
  RX                            2                              0
D41V12, continuous

Clustering(42) Variable = DEL PEAK 25(19Q13.42) MUTATION ANALYSIS
D42V1, survival
                                 sevent
clus2                              0  1
  DEL PEAK 25(19Q13.42) MUTATED    3  3
  DEL PEAK 25(19Q13.42) WILD-TYPE 32 16
  DEL PEAK 25(19Q13.42) MUTATED DEL PEAK 25(19Q13.42) WILD-TYPE 
                              6                              48 
  DEL PEAK 25(19Q13.42) MUTATED DEL PEAK 25(19Q13.42) WILD-TYPE 
                              3                              16 
$`DEL PEAK 25(19Q13.42) MUTATED`
TCGA-HZ-8005 TCGA-HZ-A4BH TCGA-IB-7646 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-A5SS 
        3.91         5.98         4.77        15.65        27.98        15.12 

$`DEL PEAK 25(19Q13.42) WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.96        11.84         7.07         5.03         5.19 
TCGA-FB-A4P5 TCGA-FB-A545 TCGA-H6-8124 TCGA-H6-A45N TCGA-HZ-7289 TCGA-HZ-7918 
        0.13         0.03        12.89         7.63         7.86         0.92 
TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 
        0.66         0.13         0.26        12.13        12.03         0.26 
TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8519 
        0.62         0.99         0.69         0.92         0.49         0.10 
TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-HZ-A4BK TCGA-IB-7644 
        0.16         2.96         0.76         1.02         1.51        11.41 
TCGA-IB-7645 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7886 TCGA-IB-7887 
       49.38        21.86        15.35        19.82         4.04         3.58 
TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 
       43.79        15.78        19.66        16.04         3.85        15.95 
TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5ST 
        0.56        17.13        10.82         9.83         7.20         0.26 

  DEL PEAK 25(19Q13.42) MUTATED DEL PEAK 25(19Q13.42) WILD-TYPE 
                           3.91                            0.03 
  DEL PEAK 25(19Q13.42) MUTATED DEL PEAK 25(19Q13.42) WILD-TYPE 
                          27.98                           49.38 
  DEL PEAK 25(19Q13.42) MUTATED DEL PEAK 25(19Q13.42) WILD-TYPE 
                          10.55                            5.11 
[1] "3.9 - 28.0 (10.6)" "0.0 - 49.4 (5.1)" 
                     TCGA-F2-6879                      TCGA-F2-6880 
"DEL PEAK 25(19Q13.42) WILD-TYPE" "DEL PEAK 25(19Q13.42) WILD-TYPE" 
                     TCGA-F2-7273                      TCGA-F2-7276 
"DEL PEAK 25(19Q13.42) WILD-TYPE" "DEL PEAK 25(19Q13.42) WILD-TYPE" 
                     TCGA-F2-A44G                      TCGA-F2-A44H 
"DEL PEAK 25(19Q13.42) WILD-TYPE" "DEL PEAK 25(19Q13.42) WILD-TYPE" 
                     TCGA-FB-A4P5                      TCGA-FB-A545 
"DEL PEAK 25(19Q13.42) WILD-TYPE" "DEL PEAK 25(19Q13.42) WILD-TYPE" 
                     TCGA-H6-8124                      TCGA-H6-A45N 
"DEL PEAK 25(19Q13.42) WILD-TYPE" "DEL PEAK 25(19Q13.42) WILD-TYPE" 
                     TCGA-HZ-7289                      TCGA-HZ-7918 
"DEL PEAK 25(19Q13.42) WILD-TYPE" "DEL PEAK 25(19Q13.42) WILD-TYPE" 
                     TCGA-HZ-7919                      TCGA-HZ-7922 
"DEL PEAK 25(19Q13.42) WILD-TYPE" "DEL PEAK 25(19Q13.42) WILD-TYPE" 
                     TCGA-HZ-7923                      TCGA-HZ-7924 
"DEL PEAK 25(19Q13.42) WILD-TYPE" "DEL PEAK 25(19Q13.42) WILD-TYPE" 
                     TCGA-HZ-7925                      TCGA-HZ-7926 
"DEL PEAK 25(19Q13.42) WILD-TYPE" "DEL PEAK 25(19Q13.42) WILD-TYPE" 
                     TCGA-HZ-8001                      TCGA-HZ-8002 
"DEL PEAK 25(19Q13.42) WILD-TYPE" "DEL PEAK 25(19Q13.42) WILD-TYPE" 
                     TCGA-HZ-8003                      TCGA-HZ-8005 
"DEL PEAK 25(19Q13.42) WILD-TYPE"   "DEL PEAK 25(19Q13.42) MUTATED" 
                     TCGA-HZ-8315                      TCGA-HZ-8317 
"DEL PEAK 25(19Q13.42) WILD-TYPE" "DEL PEAK 25(19Q13.42) WILD-TYPE" 
                     TCGA-HZ-8519                      TCGA-HZ-8636 
"DEL PEAK 25(19Q13.42) WILD-TYPE" "DEL PEAK 25(19Q13.42) WILD-TYPE" 
                     TCGA-HZ-8638                      TCGA-HZ-A49G 
"DEL PEAK 25(19Q13.42) WILD-TYPE" "DEL PEAK 25(19Q13.42) WILD-TYPE" 
                     TCGA-HZ-A49H                      TCGA-HZ-A4BH 
"DEL PEAK 25(19Q13.42) WILD-TYPE"   "DEL PEAK 25(19Q13.42) MUTATED" 
                     TCGA-HZ-A4BK                      TCGA-IB-7644 
"DEL PEAK 25(19Q13.42) WILD-TYPE" "DEL PEAK 25(19Q13.42) WILD-TYPE" 
                     TCGA-IB-7645                      TCGA-IB-7646 
"DEL PEAK 25(19Q13.42) WILD-TYPE"   "DEL PEAK 25(19Q13.42) MUTATED" 
                     TCGA-IB-7647                      TCGA-IB-7649 
"DEL PEAK 25(19Q13.42) WILD-TYPE" "DEL PEAK 25(19Q13.42) WILD-TYPE" 
                     TCGA-IB-7651                      TCGA-IB-7652 
"DEL PEAK 25(19Q13.42) WILD-TYPE"   "DEL PEAK 25(19Q13.42) MUTATED" 
                     TCGA-IB-7885                      TCGA-IB-7886 
  "DEL PEAK 25(19Q13.42) MUTATED" "DEL PEAK 25(19Q13.42) WILD-TYPE" 
                     TCGA-IB-7887                      TCGA-IB-7888 
"DEL PEAK 25(19Q13.42) WILD-TYPE" "DEL PEAK 25(19Q13.42) WILD-TYPE" 
                     TCGA-IB-7889                      TCGA-IB-7890 
"DEL PEAK 25(19Q13.42) WILD-TYPE" "DEL PEAK 25(19Q13.42) WILD-TYPE" 
                     TCGA-IB-7891                      TCGA-IB-7893 
"DEL PEAK 25(19Q13.42) WILD-TYPE" "DEL PEAK 25(19Q13.42) WILD-TYPE" 
                     TCGA-IB-7897                      TCGA-IB-8126 
"DEL PEAK 25(19Q13.42) WILD-TYPE" "DEL PEAK 25(19Q13.42) WILD-TYPE" 
                     TCGA-IB-8127                      TCGA-IB-A5SO 
"DEL PEAK 25(19Q13.42) WILD-TYPE" "DEL PEAK 25(19Q13.42) WILD-TYPE" 
                     TCGA-IB-A5SP                      TCGA-IB-A5SQ 
"DEL PEAK 25(19Q13.42) WILD-TYPE" "DEL PEAK 25(19Q13.42) WILD-TYPE" 
                     TCGA-IB-A5SS                      TCGA-IB-A5ST 
  "DEL PEAK 25(19Q13.42) MUTATED" "DEL PEAK 25(19Q13.42) WILD-TYPE" 
                     TCGA-F2-6879                      TCGA-F2-6880 
"DEL PEAK 25(19Q13.42) WILD-TYPE" "DEL PEAK 25(19Q13.42) WILD-TYPE" 
                     TCGA-F2-7273                      TCGA-F2-7276 
"DEL PEAK 25(19Q13.42) WILD-TYPE" "DEL PEAK 25(19Q13.42) WILD-TYPE" 
                     TCGA-F2-A44G                      TCGA-F2-A44H 
"DEL PEAK 25(19Q13.42) WILD-TYPE" "DEL PEAK 25(19Q13.42) WILD-TYPE" 
                     TCGA-FB-A4P5                      TCGA-FB-A545 
"DEL PEAK 25(19Q13.42) WILD-TYPE" "DEL PEAK 25(19Q13.42) WILD-TYPE" 
                     TCGA-H6-8124                      TCGA-H6-A45N 
"DEL PEAK 25(19Q13.42) WILD-TYPE" "DEL PEAK 25(19Q13.42) WILD-TYPE" 
                     TCGA-HZ-7289                      TCGA-HZ-7918 
"DEL PEAK 25(19Q13.42) WILD-TYPE" "DEL PEAK 25(19Q13.42) WILD-TYPE" 
                     TCGA-HZ-7919                      TCGA-HZ-7922 
"DEL PEAK 25(19Q13.42) WILD-TYPE" "DEL PEAK 25(19Q13.42) WILD-TYPE" 
                     TCGA-HZ-7923                      TCGA-HZ-7924 
"DEL PEAK 25(19Q13.42) WILD-TYPE" "DEL PEAK 25(19Q13.42) WILD-TYPE" 
                     TCGA-HZ-7925                      TCGA-HZ-7926 
"DEL PEAK 25(19Q13.42) WILD-TYPE" "DEL PEAK 25(19Q13.42) WILD-TYPE" 
                     TCGA-HZ-8001                      TCGA-HZ-8002 
"DEL PEAK 25(19Q13.42) WILD-TYPE" "DEL PEAK 25(19Q13.42) WILD-TYPE" 
                     TCGA-HZ-8003                      TCGA-HZ-8005 
"DEL PEAK 25(19Q13.42) WILD-TYPE"   "DEL PEAK 25(19Q13.42) MUTATED" 
                     TCGA-HZ-8315                      TCGA-HZ-8317 
"DEL PEAK 25(19Q13.42) WILD-TYPE" "DEL PEAK 25(19Q13.42) WILD-TYPE" 
                     TCGA-HZ-8519                      TCGA-HZ-8636 
"DEL PEAK 25(19Q13.42) WILD-TYPE" "DEL PEAK 25(19Q13.42) WILD-TYPE" 
                     TCGA-HZ-8638                      TCGA-HZ-A49G 
"DEL PEAK 25(19Q13.42) WILD-TYPE" "DEL PEAK 25(19Q13.42) WILD-TYPE" 
                     TCGA-HZ-A49H                      TCGA-HZ-A4BH 
"DEL PEAK 25(19Q13.42) WILD-TYPE"   "DEL PEAK 25(19Q13.42) MUTATED" 
                     TCGA-HZ-A4BK                      TCGA-IB-7644 
"DEL PEAK 25(19Q13.42) WILD-TYPE" "DEL PEAK 25(19Q13.42) WILD-TYPE" 
                     TCGA-IB-7645                      TCGA-IB-7646 
"DEL PEAK 25(19Q13.42) WILD-TYPE"   "DEL PEAK 25(19Q13.42) MUTATED" 
                     TCGA-IB-7647                      TCGA-IB-7649 
"DEL PEAK 25(19Q13.42) WILD-TYPE" "DEL PEAK 25(19Q13.42) WILD-TYPE" 
                     TCGA-IB-7651                      TCGA-IB-7652 
"DEL PEAK 25(19Q13.42) WILD-TYPE"   "DEL PEAK 25(19Q13.42) MUTATED" 
                     TCGA-IB-7885                      TCGA-IB-7886 
  "DEL PEAK 25(19Q13.42) MUTATED" "DEL PEAK 25(19Q13.42) WILD-TYPE" 
                     TCGA-IB-7887                      TCGA-IB-7888 
"DEL PEAK 25(19Q13.42) WILD-TYPE" "DEL PEAK 25(19Q13.42) WILD-TYPE" 
                     TCGA-IB-7889                      TCGA-IB-7890 
"DEL PEAK 25(19Q13.42) WILD-TYPE" "DEL PEAK 25(19Q13.42) WILD-TYPE" 
                     TCGA-IB-7891                      TCGA-IB-7893 
"DEL PEAK 25(19Q13.42) WILD-TYPE" "DEL PEAK 25(19Q13.42) WILD-TYPE" 
                     TCGA-IB-7897                      TCGA-IB-8126 
"DEL PEAK 25(19Q13.42) WILD-TYPE" "DEL PEAK 25(19Q13.42) WILD-TYPE" 
                     TCGA-IB-8127                      TCGA-IB-A5SO 
"DEL PEAK 25(19Q13.42) WILD-TYPE" "DEL PEAK 25(19Q13.42) WILD-TYPE" 
                     TCGA-IB-A5SP                      TCGA-IB-A5SQ 
"DEL PEAK 25(19Q13.42) WILD-TYPE" "DEL PEAK 25(19Q13.42) WILD-TYPE" 
                     TCGA-IB-A5SS                      TCGA-IB-A5ST 
  "DEL PEAK 25(19Q13.42) MUTATED" "DEL PEAK 25(19Q13.42) WILD-TYPE" 
                     TCGA-F2-6879                      TCGA-F2-6880 
"DEL PEAK 25(19Q13.42) WILD-TYPE" "DEL PEAK 25(19Q13.42) WILD-TYPE" 
                     TCGA-F2-7273                      TCGA-F2-7276 
"DEL PEAK 25(19Q13.42) WILD-TYPE" "DEL PEAK 25(19Q13.42) WILD-TYPE" 
                     TCGA-F2-A44G                      TCGA-F2-A44H 
"DEL PEAK 25(19Q13.42) WILD-TYPE" "DEL PEAK 25(19Q13.42) WILD-TYPE" 
                     TCGA-FB-A4P5                      TCGA-FB-A545 
"DEL PEAK 25(19Q13.42) WILD-TYPE" "DEL PEAK 25(19Q13.42) WILD-TYPE" 
                     TCGA-H6-8124                      TCGA-H6-A45N 
"DEL PEAK 25(19Q13.42) WILD-TYPE" "DEL PEAK 25(19Q13.42) WILD-TYPE" 
                     TCGA-HZ-7289                      TCGA-HZ-7918 
"DEL PEAK 25(19Q13.42) WILD-TYPE" "DEL PEAK 25(19Q13.42) WILD-TYPE" 
                     TCGA-HZ-7919                      TCGA-HZ-7922 
"DEL PEAK 25(19Q13.42) WILD-TYPE" "DEL PEAK 25(19Q13.42) WILD-TYPE" 
                     TCGA-HZ-7923                      TCGA-HZ-7924 
"DEL PEAK 25(19Q13.42) WILD-TYPE" "DEL PEAK 25(19Q13.42) WILD-TYPE" 
                     TCGA-HZ-7925                      TCGA-HZ-7926 
"DEL PEAK 25(19Q13.42) WILD-TYPE" "DEL PEAK 25(19Q13.42) WILD-TYPE" 
                     TCGA-HZ-8001                      TCGA-HZ-8002 
"DEL PEAK 25(19Q13.42) WILD-TYPE" "DEL PEAK 25(19Q13.42) WILD-TYPE" 
                     TCGA-HZ-8003                      TCGA-HZ-8005 
"DEL PEAK 25(19Q13.42) WILD-TYPE"   "DEL PEAK 25(19Q13.42) MUTATED" 
                     TCGA-HZ-8315                      TCGA-HZ-8317 
"DEL PEAK 25(19Q13.42) WILD-TYPE" "DEL PEAK 25(19Q13.42) WILD-TYPE" 
                     TCGA-HZ-8519                      TCGA-HZ-8636 
"DEL PEAK 25(19Q13.42) WILD-TYPE" "DEL PEAK 25(19Q13.42) WILD-TYPE" 
                     TCGA-HZ-8638                      TCGA-HZ-A49G 
"DEL PEAK 25(19Q13.42) WILD-TYPE" "DEL PEAK 25(19Q13.42) WILD-TYPE" 
                     TCGA-HZ-A49H                      TCGA-HZ-A4BH 
"DEL PEAK 25(19Q13.42) WILD-TYPE"   "DEL PEAK 25(19Q13.42) MUTATED" 
                     TCGA-HZ-A4BK                      TCGA-IB-7644 
"DEL PEAK 25(19Q13.42) WILD-TYPE" "DEL PEAK 25(19Q13.42) WILD-TYPE" 
                     TCGA-IB-7645                      TCGA-IB-7646 
"DEL PEAK 25(19Q13.42) WILD-TYPE"   "DEL PEAK 25(19Q13.42) MUTATED" 
                     TCGA-IB-7647                      TCGA-IB-7649 
"DEL PEAK 25(19Q13.42) WILD-TYPE" "DEL PEAK 25(19Q13.42) WILD-TYPE" 
                     TCGA-IB-7651                      TCGA-IB-7652 
"DEL PEAK 25(19Q13.42) WILD-TYPE"   "DEL PEAK 25(19Q13.42) MUTATED" 
                     TCGA-IB-7885                      TCGA-IB-7886 
  "DEL PEAK 25(19Q13.42) MUTATED" "DEL PEAK 25(19Q13.42) WILD-TYPE" 
                     TCGA-IB-7887                      TCGA-IB-7888 
"DEL PEAK 25(19Q13.42) WILD-TYPE" "DEL PEAK 25(19Q13.42) WILD-TYPE" 
                     TCGA-IB-7889                      TCGA-IB-7890 
"DEL PEAK 25(19Q13.42) WILD-TYPE" "DEL PEAK 25(19Q13.42) WILD-TYPE" 
                     TCGA-IB-7891                      TCGA-IB-7893 
"DEL PEAK 25(19Q13.42) WILD-TYPE" "DEL PEAK 25(19Q13.42) WILD-TYPE" 
                     TCGA-IB-7897                      TCGA-IB-8126 
"DEL PEAK 25(19Q13.42) WILD-TYPE" "DEL PEAK 25(19Q13.42) WILD-TYPE" 
                     TCGA-IB-8127                      TCGA-IB-A5SO 
"DEL PEAK 25(19Q13.42) WILD-TYPE" "DEL PEAK 25(19Q13.42) WILD-TYPE" 
                     TCGA-IB-A5SP                      TCGA-IB-A5SQ 
"DEL PEAK 25(19Q13.42) WILD-TYPE" "DEL PEAK 25(19Q13.42) WILD-TYPE" 
                     TCGA-IB-A5SS                      TCGA-IB-A5ST 
  "DEL PEAK 25(19Q13.42) MUTATED" "DEL PEAK 25(19Q13.42) WILD-TYPE" 
[1] "hr=" "1.1"
D42V2, continuous
                                 vv
clus                              STAGE IA STAGE IB STAGE IIA STAGE IIB
  DEL PEAK 25(19Q13.42) MUTATED          0        0         0         7
  DEL PEAK 25(19Q13.42) WILD-TYPE        2        3         7        34
                                 vv
clus                              STAGE III STAGE IV
  DEL PEAK 25(19Q13.42) MUTATED           0        0
  DEL PEAK 25(19Q13.42) WILD-TYPE         2        2
D42V3, multiclass
                                 vv
clus                              T1+T2 T3+T4
  DEL PEAK 25(19Q13.42) MUTATED       0     7
  DEL PEAK 25(19Q13.42) WILD-TYPE     6    44
D42V4, multiclass
       clus
vv      DEL PEAK 25(19Q13.42) MUTATED DEL PEAK 25(19Q13.42) WILD-TYPE
  T1+T2                             0                               6
  T3+T4                             7                              44
D42V5, binary
                                 cls
clus                               0  1
  DEL PEAK 25(19Q13.42) MUTATED    0  7
  DEL PEAK 25(19Q13.42) WILD-TYPE 14 36
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 25(19Q13.42) MUTATED      0    7
  DEL PEAK 25(19Q13.42) WILD-TYPE   14   36
   clus
vv  DEL PEAK 25(19Q13.42) MUTATED DEL PEAK 25(19Q13.42) WILD-TYPE
  0                             0                              14
  1                             7                              36
                                 vv
clus                              M0 M1 MX
  DEL PEAK 25(19Q13.42) MUTATED    4  0  3
  DEL PEAK 25(19Q13.42) WILD-TYPE 28  2 20
D42V6, multiclass
    clus
vv   DEL PEAK 25(19Q13.42) MUTATED DEL PEAK 25(19Q13.42) WILD-TYPE
  M0                             4                              28
  M1                             0                               2
  MX                             3                              20
D42V7, binary
                                 cls
clus                               0  1
  DEL PEAK 25(19Q13.42) MUTATED    3  4
  DEL PEAK 25(19Q13.42) WILD-TYPE 28 22
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 25(19Q13.42) MUTATED      3    4
  DEL PEAK 25(19Q13.42) WILD-TYPE   28   22
        clus
vv       DEL PEAK 25(19Q13.42) MUTATED DEL PEAK 25(19Q13.42) WILD-TYPE
  FEMALE                             3                              28
  MALE                               4                              22
                                 vv
clus                              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  DEL PEAK 25(19Q13.42) MUTATED                                     7
  DEL PEAK 25(19Q13.42) WILD-TYPE                                  44
                                 vv
clus                              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  DEL PEAK 25(19Q13.42) MUTATED                                       0
  DEL PEAK 25(19Q13.42) WILD-TYPE                                     4
                                 vv
clus                              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  DEL PEAK 25(19Q13.42) MUTATED                                                  0
  DEL PEAK 25(19Q13.42) WILD-TYPE                                                1
D42V8, multiclass
                                                  clus
vv                                                 DEL PEAK 25(19Q13.42) MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                          7
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                        0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                             0
                                                  clus
vv                                                 DEL PEAK 25(19Q13.42) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                           44
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                          4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                               1
D42V9, continuous
[1] "Remove cluster labels:"        "DEL PEAK 25(19Q13.42) MUTATED"
clus
  DEL PEAK 25(19Q13.42) MUTATED DEL PEAK 25(19Q13.42) WILD-TYPE 
                              2                              12 
                     TCGA-F2-6880                      TCGA-FB-A4P5 
"DEL PEAK 25(19Q13.42) WILD-TYPE" "DEL PEAK 25(19Q13.42) WILD-TYPE" 
                     TCGA-H6-8124                      TCGA-H6-A45N 
"DEL PEAK 25(19Q13.42) WILD-TYPE" "DEL PEAK 25(19Q13.42) WILD-TYPE" 
                     TCGA-IB-7644                      TCGA-IB-7649 
"DEL PEAK 25(19Q13.42) WILD-TYPE" "DEL PEAK 25(19Q13.42) WILD-TYPE" 
                     TCGA-IB-7651                      TCGA-IB-7886 
"DEL PEAK 25(19Q13.42) WILD-TYPE" "DEL PEAK 25(19Q13.42) WILD-TYPE" 
                     TCGA-IB-7887                      TCGA-IB-7891 
"DEL PEAK 25(19Q13.42) WILD-TYPE" "DEL PEAK 25(19Q13.42) WILD-TYPE" 
                     TCGA-IB-8126                      TCGA-IB-8127 
"DEL PEAK 25(19Q13.42) WILD-TYPE" "DEL PEAK 25(19Q13.42) WILD-TYPE" 
D42V10, continuous
[1] "Remove cluster labels:"        "DEL PEAK 25(19Q13.42) MUTATED"
clus
  DEL PEAK 25(19Q13.42) MUTATED DEL PEAK 25(19Q13.42) WILD-TYPE 
                              2                               9 
                     TCGA-FB-A4P5                      TCGA-H6-8124 
"DEL PEAK 25(19Q13.42) WILD-TYPE" "DEL PEAK 25(19Q13.42) WILD-TYPE" 
                     TCGA-IB-7644                      TCGA-IB-7649 
"DEL PEAK 25(19Q13.42) WILD-TYPE" "DEL PEAK 25(19Q13.42) WILD-TYPE" 
                     TCGA-IB-7651                      TCGA-IB-7886 
"DEL PEAK 25(19Q13.42) WILD-TYPE" "DEL PEAK 25(19Q13.42) WILD-TYPE" 
                     TCGA-IB-7891                      TCGA-IB-8126 
"DEL PEAK 25(19Q13.42) WILD-TYPE" "DEL PEAK 25(19Q13.42) WILD-TYPE" 
                     TCGA-IB-8127 
"DEL PEAK 25(19Q13.42) WILD-TYPE" 
                                 vv
clus                              R0 R1 RX
  DEL PEAK 25(19Q13.42) MUTATED    2  5  0
  DEL PEAK 25(19Q13.42) WILD-TYPE 30 16  2
D42V11, multiclass
    clus
vv   DEL PEAK 25(19Q13.42) MUTATED DEL PEAK 25(19Q13.42) WILD-TYPE
  R0                             2                              30
  R1                             5                              16
  RX                             0                               2
D42V12, continuous

Clustering(43) Variable = DEL PEAK 26(21Q22.11) MUTATION ANALYSIS
D43V1, survival
                                 sevent
clus2                              0  1
  DEL PEAK 26(21Q22.11) MUTATED   11  7
  DEL PEAK 26(21Q22.11) WILD-TYPE 24 12
  DEL PEAK 26(21Q22.11) MUTATED DEL PEAK 26(21Q22.11) WILD-TYPE 
                             18                              36 
  DEL PEAK 26(21Q22.11) MUTATED DEL PEAK 26(21Q22.11) WILD-TYPE 
                              7                              12 
$`DEL PEAK 26(21Q22.11) MUTATED`
TCGA-FB-A545 TCGA-H6-8124 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-8005 
        0.03        12.89         0.92         0.66         0.13         3.91 
TCGA-HZ-8636 TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7646 TCGA-IB-7649 
        0.16         5.98         1.51        11.41         4.77        15.35 
TCGA-IB-7651 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-A5SP TCGA-IB-A5SS 
       19.82        27.98         4.04         3.58         9.83        15.12 

$`DEL PEAK 26(21Q22.11) WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.96        11.84         7.07         5.03         5.19 
TCGA-FB-A4P5 TCGA-H6-A45N TCGA-HZ-7289 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
        0.13         7.63         7.86         0.26        12.13        12.03 
TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8315 TCGA-HZ-8317 
        0.26         0.62         0.99         0.69         0.92         0.49 
TCGA-HZ-8519 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-IB-7645 TCGA-IB-7647 
        0.10         2.96         0.76         1.02        49.38        21.86 
TCGA-IB-7652 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 
       15.65        43.79        15.78        19.66        16.04         3.85 
TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SQ TCGA-IB-A5ST 
       15.95         0.56        17.13        10.82         7.20         0.26 

  DEL PEAK 26(21Q22.11) MUTATED DEL PEAK 26(21Q22.11) WILD-TYPE 
                           0.03                            0.10 
  DEL PEAK 26(21Q22.11) MUTATED DEL PEAK 26(21Q22.11) WILD-TYPE 
                          27.98                           49.38 
  DEL PEAK 26(21Q22.11) MUTATED DEL PEAK 26(21Q22.11) WILD-TYPE 
                          4.405                           7.135 
[1] "0.0 - 28.0 (4.4)" "0.1 - 49.4 (7.1)"
                     TCGA-F2-6879                      TCGA-F2-6880 
"DEL PEAK 26(21Q22.11) WILD-TYPE" "DEL PEAK 26(21Q22.11) WILD-TYPE" 
                     TCGA-F2-7273                      TCGA-F2-7276 
"DEL PEAK 26(21Q22.11) WILD-TYPE" "DEL PEAK 26(21Q22.11) WILD-TYPE" 
                     TCGA-F2-A44G                      TCGA-F2-A44H 
"DEL PEAK 26(21Q22.11) WILD-TYPE" "DEL PEAK 26(21Q22.11) WILD-TYPE" 
                     TCGA-FB-A4P5                      TCGA-FB-A545 
"DEL PEAK 26(21Q22.11) WILD-TYPE"   "DEL PEAK 26(21Q22.11) MUTATED" 
                     TCGA-H6-8124                      TCGA-H6-A45N 
  "DEL PEAK 26(21Q22.11) MUTATED" "DEL PEAK 26(21Q22.11) WILD-TYPE" 
                     TCGA-HZ-7289                      TCGA-HZ-7918 
"DEL PEAK 26(21Q22.11) WILD-TYPE"   "DEL PEAK 26(21Q22.11) MUTATED" 
                     TCGA-HZ-7919                      TCGA-HZ-7922 
  "DEL PEAK 26(21Q22.11) MUTATED"   "DEL PEAK 26(21Q22.11) MUTATED" 
                     TCGA-HZ-7923                      TCGA-HZ-7924 
"DEL PEAK 26(21Q22.11) WILD-TYPE" "DEL PEAK 26(21Q22.11) WILD-TYPE" 
                     TCGA-HZ-7925                      TCGA-HZ-7926 
"DEL PEAK 26(21Q22.11) WILD-TYPE" "DEL PEAK 26(21Q22.11) WILD-TYPE" 
                     TCGA-HZ-8001                      TCGA-HZ-8002 
"DEL PEAK 26(21Q22.11) WILD-TYPE" "DEL PEAK 26(21Q22.11) WILD-TYPE" 
                     TCGA-HZ-8003                      TCGA-HZ-8005 
"DEL PEAK 26(21Q22.11) WILD-TYPE"   "DEL PEAK 26(21Q22.11) MUTATED" 
                     TCGA-HZ-8315                      TCGA-HZ-8317 
"DEL PEAK 26(21Q22.11) WILD-TYPE" "DEL PEAK 26(21Q22.11) WILD-TYPE" 
                     TCGA-HZ-8519                      TCGA-HZ-8636 
"DEL PEAK 26(21Q22.11) WILD-TYPE"   "DEL PEAK 26(21Q22.11) MUTATED" 
                     TCGA-HZ-8638                      TCGA-HZ-A49G 
"DEL PEAK 26(21Q22.11) WILD-TYPE" "DEL PEAK 26(21Q22.11) WILD-TYPE" 
                     TCGA-HZ-A49H                      TCGA-HZ-A4BH 
"DEL PEAK 26(21Q22.11) WILD-TYPE"   "DEL PEAK 26(21Q22.11) MUTATED" 
                     TCGA-HZ-A4BK                      TCGA-IB-7644 
  "DEL PEAK 26(21Q22.11) MUTATED"   "DEL PEAK 26(21Q22.11) MUTATED" 
                     TCGA-IB-7645                      TCGA-IB-7646 
"DEL PEAK 26(21Q22.11) WILD-TYPE"   "DEL PEAK 26(21Q22.11) MUTATED" 
                     TCGA-IB-7647                      TCGA-IB-7649 
"DEL PEAK 26(21Q22.11) WILD-TYPE"   "DEL PEAK 26(21Q22.11) MUTATED" 
                     TCGA-IB-7651                      TCGA-IB-7652 
  "DEL PEAK 26(21Q22.11) MUTATED" "DEL PEAK 26(21Q22.11) WILD-TYPE" 
                     TCGA-IB-7885                      TCGA-IB-7886 
  "DEL PEAK 26(21Q22.11) MUTATED"   "DEL PEAK 26(21Q22.11) MUTATED" 
                     TCGA-IB-7887                      TCGA-IB-7888 
  "DEL PEAK 26(21Q22.11) MUTATED" "DEL PEAK 26(21Q22.11) WILD-TYPE" 
                     TCGA-IB-7889                      TCGA-IB-7890 
"DEL PEAK 26(21Q22.11) WILD-TYPE" "DEL PEAK 26(21Q22.11) WILD-TYPE" 
                     TCGA-IB-7891                      TCGA-IB-7893 
"DEL PEAK 26(21Q22.11) WILD-TYPE" "DEL PEAK 26(21Q22.11) WILD-TYPE" 
                     TCGA-IB-7897                      TCGA-IB-8126 
"DEL PEAK 26(21Q22.11) WILD-TYPE" "DEL PEAK 26(21Q22.11) WILD-TYPE" 
                     TCGA-IB-8127                      TCGA-IB-A5SO 
"DEL PEAK 26(21Q22.11) WILD-TYPE" "DEL PEAK 26(21Q22.11) WILD-TYPE" 
                     TCGA-IB-A5SP                      TCGA-IB-A5SQ 
  "DEL PEAK 26(21Q22.11) MUTATED" "DEL PEAK 26(21Q22.11) WILD-TYPE" 
                     TCGA-IB-A5SS                      TCGA-IB-A5ST 
  "DEL PEAK 26(21Q22.11) MUTATED" "DEL PEAK 26(21Q22.11) WILD-TYPE" 
                     TCGA-F2-6879                      TCGA-F2-6880 
"DEL PEAK 26(21Q22.11) WILD-TYPE" "DEL PEAK 26(21Q22.11) WILD-TYPE" 
                     TCGA-F2-7273                      TCGA-F2-7276 
"DEL PEAK 26(21Q22.11) WILD-TYPE" "DEL PEAK 26(21Q22.11) WILD-TYPE" 
                     TCGA-F2-A44G                      TCGA-F2-A44H 
"DEL PEAK 26(21Q22.11) WILD-TYPE" "DEL PEAK 26(21Q22.11) WILD-TYPE" 
                     TCGA-FB-A4P5                      TCGA-FB-A545 
"DEL PEAK 26(21Q22.11) WILD-TYPE"   "DEL PEAK 26(21Q22.11) MUTATED" 
                     TCGA-H6-8124                      TCGA-H6-A45N 
  "DEL PEAK 26(21Q22.11) MUTATED" "DEL PEAK 26(21Q22.11) WILD-TYPE" 
                     TCGA-HZ-7289                      TCGA-HZ-7918 
"DEL PEAK 26(21Q22.11) WILD-TYPE"   "DEL PEAK 26(21Q22.11) MUTATED" 
                     TCGA-HZ-7919                      TCGA-HZ-7922 
  "DEL PEAK 26(21Q22.11) MUTATED"   "DEL PEAK 26(21Q22.11) MUTATED" 
                     TCGA-HZ-7923                      TCGA-HZ-7924 
"DEL PEAK 26(21Q22.11) WILD-TYPE" "DEL PEAK 26(21Q22.11) WILD-TYPE" 
                     TCGA-HZ-7925                      TCGA-HZ-7926 
"DEL PEAK 26(21Q22.11) WILD-TYPE" "DEL PEAK 26(21Q22.11) WILD-TYPE" 
                     TCGA-HZ-8001                      TCGA-HZ-8002 
"DEL PEAK 26(21Q22.11) WILD-TYPE" "DEL PEAK 26(21Q22.11) WILD-TYPE" 
                     TCGA-HZ-8003                      TCGA-HZ-8005 
"DEL PEAK 26(21Q22.11) WILD-TYPE"   "DEL PEAK 26(21Q22.11) MUTATED" 
                     TCGA-HZ-8315                      TCGA-HZ-8317 
"DEL PEAK 26(21Q22.11) WILD-TYPE" "DEL PEAK 26(21Q22.11) WILD-TYPE" 
                     TCGA-HZ-8519                      TCGA-HZ-8636 
"DEL PEAK 26(21Q22.11) WILD-TYPE"   "DEL PEAK 26(21Q22.11) MUTATED" 
                     TCGA-HZ-8638                      TCGA-HZ-A49G 
"DEL PEAK 26(21Q22.11) WILD-TYPE" "DEL PEAK 26(21Q22.11) WILD-TYPE" 
                     TCGA-HZ-A49H                      TCGA-HZ-A4BH 
"DEL PEAK 26(21Q22.11) WILD-TYPE"   "DEL PEAK 26(21Q22.11) MUTATED" 
                     TCGA-HZ-A4BK                      TCGA-IB-7644 
  "DEL PEAK 26(21Q22.11) MUTATED"   "DEL PEAK 26(21Q22.11) MUTATED" 
                     TCGA-IB-7645                      TCGA-IB-7646 
"DEL PEAK 26(21Q22.11) WILD-TYPE"   "DEL PEAK 26(21Q22.11) MUTATED" 
                     TCGA-IB-7647                      TCGA-IB-7649 
"DEL PEAK 26(21Q22.11) WILD-TYPE"   "DEL PEAK 26(21Q22.11) MUTATED" 
                     TCGA-IB-7651                      TCGA-IB-7652 
  "DEL PEAK 26(21Q22.11) MUTATED" "DEL PEAK 26(21Q22.11) WILD-TYPE" 
                     TCGA-IB-7885                      TCGA-IB-7886 
  "DEL PEAK 26(21Q22.11) MUTATED"   "DEL PEAK 26(21Q22.11) MUTATED" 
                     TCGA-IB-7887                      TCGA-IB-7888 
  "DEL PEAK 26(21Q22.11) MUTATED" "DEL PEAK 26(21Q22.11) WILD-TYPE" 
                     TCGA-IB-7889                      TCGA-IB-7890 
"DEL PEAK 26(21Q22.11) WILD-TYPE" "DEL PEAK 26(21Q22.11) WILD-TYPE" 
                     TCGA-IB-7891                      TCGA-IB-7893 
"DEL PEAK 26(21Q22.11) WILD-TYPE" "DEL PEAK 26(21Q22.11) WILD-TYPE" 
                     TCGA-IB-7897                      TCGA-IB-8126 
"DEL PEAK 26(21Q22.11) WILD-TYPE" "DEL PEAK 26(21Q22.11) WILD-TYPE" 
                     TCGA-IB-8127                      TCGA-IB-A5SO 
"DEL PEAK 26(21Q22.11) WILD-TYPE" "DEL PEAK 26(21Q22.11) WILD-TYPE" 
                     TCGA-IB-A5SP                      TCGA-IB-A5SQ 
  "DEL PEAK 26(21Q22.11) MUTATED" "DEL PEAK 26(21Q22.11) WILD-TYPE" 
                     TCGA-IB-A5SS                      TCGA-IB-A5ST 
  "DEL PEAK 26(21Q22.11) MUTATED" "DEL PEAK 26(21Q22.11) WILD-TYPE" 
                     TCGA-F2-6879                      TCGA-F2-6880 
"DEL PEAK 26(21Q22.11) WILD-TYPE" "DEL PEAK 26(21Q22.11) WILD-TYPE" 
                     TCGA-F2-7273                      TCGA-F2-7276 
"DEL PEAK 26(21Q22.11) WILD-TYPE" "DEL PEAK 26(21Q22.11) WILD-TYPE" 
                     TCGA-F2-A44G                      TCGA-F2-A44H 
"DEL PEAK 26(21Q22.11) WILD-TYPE" "DEL PEAK 26(21Q22.11) WILD-TYPE" 
                     TCGA-FB-A4P5                      TCGA-FB-A545 
"DEL PEAK 26(21Q22.11) WILD-TYPE"   "DEL PEAK 26(21Q22.11) MUTATED" 
                     TCGA-H6-8124                      TCGA-H6-A45N 
  "DEL PEAK 26(21Q22.11) MUTATED" "DEL PEAK 26(21Q22.11) WILD-TYPE" 
                     TCGA-HZ-7289                      TCGA-HZ-7918 
"DEL PEAK 26(21Q22.11) WILD-TYPE"   "DEL PEAK 26(21Q22.11) MUTATED" 
                     TCGA-HZ-7919                      TCGA-HZ-7922 
  "DEL PEAK 26(21Q22.11) MUTATED"   "DEL PEAK 26(21Q22.11) MUTATED" 
                     TCGA-HZ-7923                      TCGA-HZ-7924 
"DEL PEAK 26(21Q22.11) WILD-TYPE" "DEL PEAK 26(21Q22.11) WILD-TYPE" 
                     TCGA-HZ-7925                      TCGA-HZ-7926 
"DEL PEAK 26(21Q22.11) WILD-TYPE" "DEL PEAK 26(21Q22.11) WILD-TYPE" 
                     TCGA-HZ-8001                      TCGA-HZ-8002 
"DEL PEAK 26(21Q22.11) WILD-TYPE" "DEL PEAK 26(21Q22.11) WILD-TYPE" 
                     TCGA-HZ-8003                      TCGA-HZ-8005 
"DEL PEAK 26(21Q22.11) WILD-TYPE"   "DEL PEAK 26(21Q22.11) MUTATED" 
                     TCGA-HZ-8315                      TCGA-HZ-8317 
"DEL PEAK 26(21Q22.11) WILD-TYPE" "DEL PEAK 26(21Q22.11) WILD-TYPE" 
                     TCGA-HZ-8519                      TCGA-HZ-8636 
"DEL PEAK 26(21Q22.11) WILD-TYPE"   "DEL PEAK 26(21Q22.11) MUTATED" 
                     TCGA-HZ-8638                      TCGA-HZ-A49G 
"DEL PEAK 26(21Q22.11) WILD-TYPE" "DEL PEAK 26(21Q22.11) WILD-TYPE" 
                     TCGA-HZ-A49H                      TCGA-HZ-A4BH 
"DEL PEAK 26(21Q22.11) WILD-TYPE"   "DEL PEAK 26(21Q22.11) MUTATED" 
                     TCGA-HZ-A4BK                      TCGA-IB-7644 
  "DEL PEAK 26(21Q22.11) MUTATED"   "DEL PEAK 26(21Q22.11) MUTATED" 
                     TCGA-IB-7645                      TCGA-IB-7646 
"DEL PEAK 26(21Q22.11) WILD-TYPE"   "DEL PEAK 26(21Q22.11) MUTATED" 
                     TCGA-IB-7647                      TCGA-IB-7649 
"DEL PEAK 26(21Q22.11) WILD-TYPE"   "DEL PEAK 26(21Q22.11) MUTATED" 
                     TCGA-IB-7651                      TCGA-IB-7652 
  "DEL PEAK 26(21Q22.11) MUTATED" "DEL PEAK 26(21Q22.11) WILD-TYPE" 
                     TCGA-IB-7885                      TCGA-IB-7886 
  "DEL PEAK 26(21Q22.11) MUTATED"   "DEL PEAK 26(21Q22.11) MUTATED" 
                     TCGA-IB-7887                      TCGA-IB-7888 
  "DEL PEAK 26(21Q22.11) MUTATED" "DEL PEAK 26(21Q22.11) WILD-TYPE" 
                     TCGA-IB-7889                      TCGA-IB-7890 
"DEL PEAK 26(21Q22.11) WILD-TYPE" "DEL PEAK 26(21Q22.11) WILD-TYPE" 
                     TCGA-IB-7891                      TCGA-IB-7893 
"DEL PEAK 26(21Q22.11) WILD-TYPE" "DEL PEAK 26(21Q22.11) WILD-TYPE" 
                     TCGA-IB-7897                      TCGA-IB-8126 
"DEL PEAK 26(21Q22.11) WILD-TYPE" "DEL PEAK 26(21Q22.11) WILD-TYPE" 
                     TCGA-IB-8127                      TCGA-IB-A5SO 
"DEL PEAK 26(21Q22.11) WILD-TYPE" "DEL PEAK 26(21Q22.11) WILD-TYPE" 
                     TCGA-IB-A5SP                      TCGA-IB-A5SQ 
  "DEL PEAK 26(21Q22.11) MUTATED" "DEL PEAK 26(21Q22.11) WILD-TYPE" 
                     TCGA-IB-A5SS                      TCGA-IB-A5ST 
  "DEL PEAK 26(21Q22.11) MUTATED" "DEL PEAK 26(21Q22.11) WILD-TYPE" 
[1] "hr=" "1.7"
D43V2, continuous
                                 vv
clus                              STAGE IA STAGE IB STAGE IIA STAGE IIB
  DEL PEAK 26(21Q22.11) MUTATED          0        0         1        16
  DEL PEAK 26(21Q22.11) WILD-TYPE        2        3         6        25
                                 vv
clus                              STAGE III STAGE IV
  DEL PEAK 26(21Q22.11) MUTATED           0        2
  DEL PEAK 26(21Q22.11) WILD-TYPE         2        0
D43V3, multiclass
                                 vv
clus                              T1+T2 T3+T4
  DEL PEAK 26(21Q22.11) MUTATED       0    19
  DEL PEAK 26(21Q22.11) WILD-TYPE     6    32
D43V4, multiclass
       clus
vv      DEL PEAK 26(21Q22.11) MUTATED DEL PEAK 26(21Q22.11) WILD-TYPE
  T1+T2                             0                               6
  T3+T4                            19                              32
D43V5, binary
                                 cls
clus                               0  1
  DEL PEAK 26(21Q22.11) MUTATED    2 17
  DEL PEAK 26(21Q22.11) WILD-TYPE 12 26
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 26(21Q22.11) MUTATED      2   17
  DEL PEAK 26(21Q22.11) WILD-TYPE   12   26
   clus
vv  DEL PEAK 26(21Q22.11) MUTATED DEL PEAK 26(21Q22.11) WILD-TYPE
  0                             2                              12
  1                            17                              26
                                 vv
clus                              M0 M1 MX
  DEL PEAK 26(21Q22.11) MUTATED   12  2  5
  DEL PEAK 26(21Q22.11) WILD-TYPE 20  0 18
D43V6, multiclass
    clus
vv   DEL PEAK 26(21Q22.11) MUTATED DEL PEAK 26(21Q22.11) WILD-TYPE
  M0                            12                              20
  M1                             2                               0
  MX                             5                              18
D43V7, binary
                                 cls
clus                               0  1
  DEL PEAK 26(21Q22.11) MUTATED   12  7
  DEL PEAK 26(21Q22.11) WILD-TYPE 19 19
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 26(21Q22.11) MUTATED     12    7
  DEL PEAK 26(21Q22.11) WILD-TYPE   19   19
        clus
vv       DEL PEAK 26(21Q22.11) MUTATED DEL PEAK 26(21Q22.11) WILD-TYPE
  FEMALE                            12                              19
  MALE                               7                              19
                                 vv
clus                              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  DEL PEAK 26(21Q22.11) MUTATED                                    18
  DEL PEAK 26(21Q22.11) WILD-TYPE                                  33
                                 vv
clus                              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  DEL PEAK 26(21Q22.11) MUTATED                                       1
  DEL PEAK 26(21Q22.11) WILD-TYPE                                     3
                                 vv
clus                              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  DEL PEAK 26(21Q22.11) MUTATED                                                  0
  DEL PEAK 26(21Q22.11) WILD-TYPE                                                1
D43V8, multiclass
                                                  clus
vv                                                 DEL PEAK 26(21Q22.11) MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                         18
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                        1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                             0
                                                  clus
vv                                                 DEL PEAK 26(21Q22.11) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                           33
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                          3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                               1
D43V9, continuous
D43V10, continuous
                                 vv
clus                              R0 R1 RX
  DEL PEAK 26(21Q22.11) MUTATED    7 11  0
  DEL PEAK 26(21Q22.11) WILD-TYPE 25 10  2
D43V11, multiclass
    clus
vv   DEL PEAK 26(21Q22.11) MUTATED DEL PEAK 26(21Q22.11) WILD-TYPE
  R0                             7                              25
  R1                            11                              10
  RX                             0                               2
D43V12, continuous

Clustering(44) Variable = DEL PEAK 27(21Q22.11) MUTATION ANALYSIS
D44V1, survival
                                 sevent
clus2                              0  1
  DEL PEAK 27(21Q22.11) MUTATED   11  7
  DEL PEAK 27(21Q22.11) WILD-TYPE 24 12
  DEL PEAK 27(21Q22.11) MUTATED DEL PEAK 27(21Q22.11) WILD-TYPE 
                             18                              36 
  DEL PEAK 27(21Q22.11) MUTATED DEL PEAK 27(21Q22.11) WILD-TYPE 
                              7                              12 
$`DEL PEAK 27(21Q22.11) MUTATED`
TCGA-FB-A545 TCGA-H6-8124 TCGA-HZ-7918 TCGA-HZ-7919 TCGA-HZ-7922 TCGA-HZ-8005 
        0.03        12.89         0.92         0.66         0.13         3.91 
TCGA-HZ-8636 TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7646 TCGA-IB-7649 
        0.16         5.98         1.51        11.41         4.77        15.35 
TCGA-IB-7651 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-A5SP TCGA-IB-A5SS 
       19.82        27.98         4.04         3.58         9.83        15.12 

$`DEL PEAK 27(21Q22.11) WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.96        11.84         7.07         5.03         5.19 
TCGA-FB-A4P5 TCGA-H6-A45N TCGA-HZ-7289 TCGA-HZ-7923 TCGA-HZ-7924 TCGA-HZ-7925 
        0.13         7.63         7.86         0.26        12.13        12.03 
TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8315 TCGA-HZ-8317 
        0.26         0.62         0.99         0.69         0.92         0.49 
TCGA-HZ-8519 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H TCGA-IB-7645 TCGA-IB-7647 
        0.10         2.96         0.76         1.02        49.38        21.86 
TCGA-IB-7652 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 
       15.65        43.79        15.78        19.66        16.04         3.85 
TCGA-IB-7897 TCGA-IB-8126 TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SQ TCGA-IB-A5ST 
       15.95         0.56        17.13        10.82         7.20         0.26 

  DEL PEAK 27(21Q22.11) MUTATED DEL PEAK 27(21Q22.11) WILD-TYPE 
                           0.03                            0.10 
  DEL PEAK 27(21Q22.11) MUTATED DEL PEAK 27(21Q22.11) WILD-TYPE 
                          27.98                           49.38 
  DEL PEAK 27(21Q22.11) MUTATED DEL PEAK 27(21Q22.11) WILD-TYPE 
                          4.405                           7.135 
[1] "0.0 - 28.0 (4.4)" "0.1 - 49.4 (7.1)"
                     TCGA-F2-6879                      TCGA-F2-6880 
"DEL PEAK 27(21Q22.11) WILD-TYPE" "DEL PEAK 27(21Q22.11) WILD-TYPE" 
                     TCGA-F2-7273                      TCGA-F2-7276 
"DEL PEAK 27(21Q22.11) WILD-TYPE" "DEL PEAK 27(21Q22.11) WILD-TYPE" 
                     TCGA-F2-A44G                      TCGA-F2-A44H 
"DEL PEAK 27(21Q22.11) WILD-TYPE" "DEL PEAK 27(21Q22.11) WILD-TYPE" 
                     TCGA-FB-A4P5                      TCGA-FB-A545 
"DEL PEAK 27(21Q22.11) WILD-TYPE"   "DEL PEAK 27(21Q22.11) MUTATED" 
                     TCGA-H6-8124                      TCGA-H6-A45N 
  "DEL PEAK 27(21Q22.11) MUTATED" "DEL PEAK 27(21Q22.11) WILD-TYPE" 
                     TCGA-HZ-7289                      TCGA-HZ-7918 
"DEL PEAK 27(21Q22.11) WILD-TYPE"   "DEL PEAK 27(21Q22.11) MUTATED" 
                     TCGA-HZ-7919                      TCGA-HZ-7922 
  "DEL PEAK 27(21Q22.11) MUTATED"   "DEL PEAK 27(21Q22.11) MUTATED" 
                     TCGA-HZ-7923                      TCGA-HZ-7924 
"DEL PEAK 27(21Q22.11) WILD-TYPE" "DEL PEAK 27(21Q22.11) WILD-TYPE" 
                     TCGA-HZ-7925                      TCGA-HZ-7926 
"DEL PEAK 27(21Q22.11) WILD-TYPE" "DEL PEAK 27(21Q22.11) WILD-TYPE" 
                     TCGA-HZ-8001                      TCGA-HZ-8002 
"DEL PEAK 27(21Q22.11) WILD-TYPE" "DEL PEAK 27(21Q22.11) WILD-TYPE" 
                     TCGA-HZ-8003                      TCGA-HZ-8005 
"DEL PEAK 27(21Q22.11) WILD-TYPE"   "DEL PEAK 27(21Q22.11) MUTATED" 
                     TCGA-HZ-8315                      TCGA-HZ-8317 
"DEL PEAK 27(21Q22.11) WILD-TYPE" "DEL PEAK 27(21Q22.11) WILD-TYPE" 
                     TCGA-HZ-8519                      TCGA-HZ-8636 
"DEL PEAK 27(21Q22.11) WILD-TYPE"   "DEL PEAK 27(21Q22.11) MUTATED" 
                     TCGA-HZ-8638                      TCGA-HZ-A49G 
"DEL PEAK 27(21Q22.11) WILD-TYPE" "DEL PEAK 27(21Q22.11) WILD-TYPE" 
                     TCGA-HZ-A49H                      TCGA-HZ-A4BH 
"DEL PEAK 27(21Q22.11) WILD-TYPE"   "DEL PEAK 27(21Q22.11) MUTATED" 
                     TCGA-HZ-A4BK                      TCGA-IB-7644 
  "DEL PEAK 27(21Q22.11) MUTATED"   "DEL PEAK 27(21Q22.11) MUTATED" 
                     TCGA-IB-7645                      TCGA-IB-7646 
"DEL PEAK 27(21Q22.11) WILD-TYPE"   "DEL PEAK 27(21Q22.11) MUTATED" 
                     TCGA-IB-7647                      TCGA-IB-7649 
"DEL PEAK 27(21Q22.11) WILD-TYPE"   "DEL PEAK 27(21Q22.11) MUTATED" 
                     TCGA-IB-7651                      TCGA-IB-7652 
  "DEL PEAK 27(21Q22.11) MUTATED" "DEL PEAK 27(21Q22.11) WILD-TYPE" 
                     TCGA-IB-7885                      TCGA-IB-7886 
  "DEL PEAK 27(21Q22.11) MUTATED"   "DEL PEAK 27(21Q22.11) MUTATED" 
                     TCGA-IB-7887                      TCGA-IB-7888 
  "DEL PEAK 27(21Q22.11) MUTATED" "DEL PEAK 27(21Q22.11) WILD-TYPE" 
                     TCGA-IB-7889                      TCGA-IB-7890 
"DEL PEAK 27(21Q22.11) WILD-TYPE" "DEL PEAK 27(21Q22.11) WILD-TYPE" 
                     TCGA-IB-7891                      TCGA-IB-7893 
"DEL PEAK 27(21Q22.11) WILD-TYPE" "DEL PEAK 27(21Q22.11) WILD-TYPE" 
                     TCGA-IB-7897                      TCGA-IB-8126 
"DEL PEAK 27(21Q22.11) WILD-TYPE" "DEL PEAK 27(21Q22.11) WILD-TYPE" 
                     TCGA-IB-8127                      TCGA-IB-A5SO 
"DEL PEAK 27(21Q22.11) WILD-TYPE" "DEL PEAK 27(21Q22.11) WILD-TYPE" 
                     TCGA-IB-A5SP                      TCGA-IB-A5SQ 
  "DEL PEAK 27(21Q22.11) MUTATED" "DEL PEAK 27(21Q22.11) WILD-TYPE" 
                     TCGA-IB-A5SS                      TCGA-IB-A5ST 
  "DEL PEAK 27(21Q22.11) MUTATED" "DEL PEAK 27(21Q22.11) WILD-TYPE" 
                     TCGA-F2-6879                      TCGA-F2-6880 
"DEL PEAK 27(21Q22.11) WILD-TYPE" "DEL PEAK 27(21Q22.11) WILD-TYPE" 
                     TCGA-F2-7273                      TCGA-F2-7276 
"DEL PEAK 27(21Q22.11) WILD-TYPE" "DEL PEAK 27(21Q22.11) WILD-TYPE" 
                     TCGA-F2-A44G                      TCGA-F2-A44H 
"DEL PEAK 27(21Q22.11) WILD-TYPE" "DEL PEAK 27(21Q22.11) WILD-TYPE" 
                     TCGA-FB-A4P5                      TCGA-FB-A545 
"DEL PEAK 27(21Q22.11) WILD-TYPE"   "DEL PEAK 27(21Q22.11) MUTATED" 
                     TCGA-H6-8124                      TCGA-H6-A45N 
  "DEL PEAK 27(21Q22.11) MUTATED" "DEL PEAK 27(21Q22.11) WILD-TYPE" 
                     TCGA-HZ-7289                      TCGA-HZ-7918 
"DEL PEAK 27(21Q22.11) WILD-TYPE"   "DEL PEAK 27(21Q22.11) MUTATED" 
                     TCGA-HZ-7919                      TCGA-HZ-7922 
  "DEL PEAK 27(21Q22.11) MUTATED"   "DEL PEAK 27(21Q22.11) MUTATED" 
                     TCGA-HZ-7923                      TCGA-HZ-7924 
"DEL PEAK 27(21Q22.11) WILD-TYPE" "DEL PEAK 27(21Q22.11) WILD-TYPE" 
                     TCGA-HZ-7925                      TCGA-HZ-7926 
"DEL PEAK 27(21Q22.11) WILD-TYPE" "DEL PEAK 27(21Q22.11) WILD-TYPE" 
                     TCGA-HZ-8001                      TCGA-HZ-8002 
"DEL PEAK 27(21Q22.11) WILD-TYPE" "DEL PEAK 27(21Q22.11) WILD-TYPE" 
                     TCGA-HZ-8003                      TCGA-HZ-8005 
"DEL PEAK 27(21Q22.11) WILD-TYPE"   "DEL PEAK 27(21Q22.11) MUTATED" 
                     TCGA-HZ-8315                      TCGA-HZ-8317 
"DEL PEAK 27(21Q22.11) WILD-TYPE" "DEL PEAK 27(21Q22.11) WILD-TYPE" 
                     TCGA-HZ-8519                      TCGA-HZ-8636 
"DEL PEAK 27(21Q22.11) WILD-TYPE"   "DEL PEAK 27(21Q22.11) MUTATED" 
                     TCGA-HZ-8638                      TCGA-HZ-A49G 
"DEL PEAK 27(21Q22.11) WILD-TYPE" "DEL PEAK 27(21Q22.11) WILD-TYPE" 
                     TCGA-HZ-A49H                      TCGA-HZ-A4BH 
"DEL PEAK 27(21Q22.11) WILD-TYPE"   "DEL PEAK 27(21Q22.11) MUTATED" 
                     TCGA-HZ-A4BK                      TCGA-IB-7644 
  "DEL PEAK 27(21Q22.11) MUTATED"   "DEL PEAK 27(21Q22.11) MUTATED" 
                     TCGA-IB-7645                      TCGA-IB-7646 
"DEL PEAK 27(21Q22.11) WILD-TYPE"   "DEL PEAK 27(21Q22.11) MUTATED" 
                     TCGA-IB-7647                      TCGA-IB-7649 
"DEL PEAK 27(21Q22.11) WILD-TYPE"   "DEL PEAK 27(21Q22.11) MUTATED" 
                     TCGA-IB-7651                      TCGA-IB-7652 
  "DEL PEAK 27(21Q22.11) MUTATED" "DEL PEAK 27(21Q22.11) WILD-TYPE" 
                     TCGA-IB-7885                      TCGA-IB-7886 
  "DEL PEAK 27(21Q22.11) MUTATED"   "DEL PEAK 27(21Q22.11) MUTATED" 
                     TCGA-IB-7887                      TCGA-IB-7888 
  "DEL PEAK 27(21Q22.11) MUTATED" "DEL PEAK 27(21Q22.11) WILD-TYPE" 
                     TCGA-IB-7889                      TCGA-IB-7890 
"DEL PEAK 27(21Q22.11) WILD-TYPE" "DEL PEAK 27(21Q22.11) WILD-TYPE" 
                     TCGA-IB-7891                      TCGA-IB-7893 
"DEL PEAK 27(21Q22.11) WILD-TYPE" "DEL PEAK 27(21Q22.11) WILD-TYPE" 
                     TCGA-IB-7897                      TCGA-IB-8126 
"DEL PEAK 27(21Q22.11) WILD-TYPE" "DEL PEAK 27(21Q22.11) WILD-TYPE" 
                     TCGA-IB-8127                      TCGA-IB-A5SO 
"DEL PEAK 27(21Q22.11) WILD-TYPE" "DEL PEAK 27(21Q22.11) WILD-TYPE" 
                     TCGA-IB-A5SP                      TCGA-IB-A5SQ 
  "DEL PEAK 27(21Q22.11) MUTATED" "DEL PEAK 27(21Q22.11) WILD-TYPE" 
                     TCGA-IB-A5SS                      TCGA-IB-A5ST 
  "DEL PEAK 27(21Q22.11) MUTATED" "DEL PEAK 27(21Q22.11) WILD-TYPE" 
                     TCGA-F2-6879                      TCGA-F2-6880 
"DEL PEAK 27(21Q22.11) WILD-TYPE" "DEL PEAK 27(21Q22.11) WILD-TYPE" 
                     TCGA-F2-7273                      TCGA-F2-7276 
"DEL PEAK 27(21Q22.11) WILD-TYPE" "DEL PEAK 27(21Q22.11) WILD-TYPE" 
                     TCGA-F2-A44G                      TCGA-F2-A44H 
"DEL PEAK 27(21Q22.11) WILD-TYPE" "DEL PEAK 27(21Q22.11) WILD-TYPE" 
                     TCGA-FB-A4P5                      TCGA-FB-A545 
"DEL PEAK 27(21Q22.11) WILD-TYPE"   "DEL PEAK 27(21Q22.11) MUTATED" 
                     TCGA-H6-8124                      TCGA-H6-A45N 
  "DEL PEAK 27(21Q22.11) MUTATED" "DEL PEAK 27(21Q22.11) WILD-TYPE" 
                     TCGA-HZ-7289                      TCGA-HZ-7918 
"DEL PEAK 27(21Q22.11) WILD-TYPE"   "DEL PEAK 27(21Q22.11) MUTATED" 
                     TCGA-HZ-7919                      TCGA-HZ-7922 
  "DEL PEAK 27(21Q22.11) MUTATED"   "DEL PEAK 27(21Q22.11) MUTATED" 
                     TCGA-HZ-7923                      TCGA-HZ-7924 
"DEL PEAK 27(21Q22.11) WILD-TYPE" "DEL PEAK 27(21Q22.11) WILD-TYPE" 
                     TCGA-HZ-7925                      TCGA-HZ-7926 
"DEL PEAK 27(21Q22.11) WILD-TYPE" "DEL PEAK 27(21Q22.11) WILD-TYPE" 
                     TCGA-HZ-8001                      TCGA-HZ-8002 
"DEL PEAK 27(21Q22.11) WILD-TYPE" "DEL PEAK 27(21Q22.11) WILD-TYPE" 
                     TCGA-HZ-8003                      TCGA-HZ-8005 
"DEL PEAK 27(21Q22.11) WILD-TYPE"   "DEL PEAK 27(21Q22.11) MUTATED" 
                     TCGA-HZ-8315                      TCGA-HZ-8317 
"DEL PEAK 27(21Q22.11) WILD-TYPE" "DEL PEAK 27(21Q22.11) WILD-TYPE" 
                     TCGA-HZ-8519                      TCGA-HZ-8636 
"DEL PEAK 27(21Q22.11) WILD-TYPE"   "DEL PEAK 27(21Q22.11) MUTATED" 
                     TCGA-HZ-8638                      TCGA-HZ-A49G 
"DEL PEAK 27(21Q22.11) WILD-TYPE" "DEL PEAK 27(21Q22.11) WILD-TYPE" 
                     TCGA-HZ-A49H                      TCGA-HZ-A4BH 
"DEL PEAK 27(21Q22.11) WILD-TYPE"   "DEL PEAK 27(21Q22.11) MUTATED" 
                     TCGA-HZ-A4BK                      TCGA-IB-7644 
  "DEL PEAK 27(21Q22.11) MUTATED"   "DEL PEAK 27(21Q22.11) MUTATED" 
                     TCGA-IB-7645                      TCGA-IB-7646 
"DEL PEAK 27(21Q22.11) WILD-TYPE"   "DEL PEAK 27(21Q22.11) MUTATED" 
                     TCGA-IB-7647                      TCGA-IB-7649 
"DEL PEAK 27(21Q22.11) WILD-TYPE"   "DEL PEAK 27(21Q22.11) MUTATED" 
                     TCGA-IB-7651                      TCGA-IB-7652 
  "DEL PEAK 27(21Q22.11) MUTATED" "DEL PEAK 27(21Q22.11) WILD-TYPE" 
                     TCGA-IB-7885                      TCGA-IB-7886 
  "DEL PEAK 27(21Q22.11) MUTATED"   "DEL PEAK 27(21Q22.11) MUTATED" 
                     TCGA-IB-7887                      TCGA-IB-7888 
  "DEL PEAK 27(21Q22.11) MUTATED" "DEL PEAK 27(21Q22.11) WILD-TYPE" 
                     TCGA-IB-7889                      TCGA-IB-7890 
"DEL PEAK 27(21Q22.11) WILD-TYPE" "DEL PEAK 27(21Q22.11) WILD-TYPE" 
                     TCGA-IB-7891                      TCGA-IB-7893 
"DEL PEAK 27(21Q22.11) WILD-TYPE" "DEL PEAK 27(21Q22.11) WILD-TYPE" 
                     TCGA-IB-7897                      TCGA-IB-8126 
"DEL PEAK 27(21Q22.11) WILD-TYPE" "DEL PEAK 27(21Q22.11) WILD-TYPE" 
                     TCGA-IB-8127                      TCGA-IB-A5SO 
"DEL PEAK 27(21Q22.11) WILD-TYPE" "DEL PEAK 27(21Q22.11) WILD-TYPE" 
                     TCGA-IB-A5SP                      TCGA-IB-A5SQ 
  "DEL PEAK 27(21Q22.11) MUTATED" "DEL PEAK 27(21Q22.11) WILD-TYPE" 
                     TCGA-IB-A5SS                      TCGA-IB-A5ST 
  "DEL PEAK 27(21Q22.11) MUTATED" "DEL PEAK 27(21Q22.11) WILD-TYPE" 
[1] "hr=" "1.7"
D44V2, continuous
                                 vv
clus                              STAGE IA STAGE IB STAGE IIA STAGE IIB
  DEL PEAK 27(21Q22.11) MUTATED          0        0         1        16
  DEL PEAK 27(21Q22.11) WILD-TYPE        2        3         6        25
                                 vv
clus                              STAGE III STAGE IV
  DEL PEAK 27(21Q22.11) MUTATED           0        2
  DEL PEAK 27(21Q22.11) WILD-TYPE         2        0
D44V3, multiclass
                                 vv
clus                              T1+T2 T3+T4
  DEL PEAK 27(21Q22.11) MUTATED       0    19
  DEL PEAK 27(21Q22.11) WILD-TYPE     6    32
D44V4, multiclass
       clus
vv      DEL PEAK 27(21Q22.11) MUTATED DEL PEAK 27(21Q22.11) WILD-TYPE
  T1+T2                             0                               6
  T3+T4                            19                              32
D44V5, binary
                                 cls
clus                               0  1
  DEL PEAK 27(21Q22.11) MUTATED    2 17
  DEL PEAK 27(21Q22.11) WILD-TYPE 12 26
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 27(21Q22.11) MUTATED      2   17
  DEL PEAK 27(21Q22.11) WILD-TYPE   12   26
   clus
vv  DEL PEAK 27(21Q22.11) MUTATED DEL PEAK 27(21Q22.11) WILD-TYPE
  0                             2                              12
  1                            17                              26
                                 vv
clus                              M0 M1 MX
  DEL PEAK 27(21Q22.11) MUTATED   12  2  5
  DEL PEAK 27(21Q22.11) WILD-TYPE 20  0 18
D44V6, multiclass
    clus
vv   DEL PEAK 27(21Q22.11) MUTATED DEL PEAK 27(21Q22.11) WILD-TYPE
  M0                            12                              20
  M1                             2                               0
  MX                             5                              18
D44V7, binary
                                 cls
clus                               0  1
  DEL PEAK 27(21Q22.11) MUTATED   12  7
  DEL PEAK 27(21Q22.11) WILD-TYPE 19 19
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 27(21Q22.11) MUTATED     12    7
  DEL PEAK 27(21Q22.11) WILD-TYPE   19   19
        clus
vv       DEL PEAK 27(21Q22.11) MUTATED DEL PEAK 27(21Q22.11) WILD-TYPE
  FEMALE                            12                              19
  MALE                               7                              19
                                 vv
clus                              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  DEL PEAK 27(21Q22.11) MUTATED                                    18
  DEL PEAK 27(21Q22.11) WILD-TYPE                                  33
                                 vv
clus                              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  DEL PEAK 27(21Q22.11) MUTATED                                       1
  DEL PEAK 27(21Q22.11) WILD-TYPE                                     3
                                 vv
clus                              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  DEL PEAK 27(21Q22.11) MUTATED                                                  0
  DEL PEAK 27(21Q22.11) WILD-TYPE                                                1
D44V8, multiclass
                                                  clus
vv                                                 DEL PEAK 27(21Q22.11) MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                         18
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                        1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                             0
                                                  clus
vv                                                 DEL PEAK 27(21Q22.11) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                           33
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                          3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                               1
D44V9, continuous
D44V10, continuous
                                 vv
clus                              R0 R1 RX
  DEL PEAK 27(21Q22.11) MUTATED    7 11  0
  DEL PEAK 27(21Q22.11) WILD-TYPE 25 10  2
D44V11, multiclass
    clus
vv   DEL PEAK 27(21Q22.11) MUTATED DEL PEAK 27(21Q22.11) WILD-TYPE
  R0                             7                              25
  R1                            11                              10
  RX                             0                               2
D44V12, continuous

Clustering(45) Variable = DEL PEAK 28(22Q13.31) MUTATION ANALYSIS
D45V1, survival
                                 sevent
clus2                              0  1
  DEL PEAK 28(22Q13.31) MUTATED    9  4
  DEL PEAK 28(22Q13.31) WILD-TYPE 26 15
  DEL PEAK 28(22Q13.31) MUTATED DEL PEAK 28(22Q13.31) WILD-TYPE 
                             13                              41 
  DEL PEAK 28(22Q13.31) MUTATED DEL PEAK 28(22Q13.31) WILD-TYPE 
                              4                              15 
$`DEL PEAK 28(22Q13.31) MUTATED`
TCGA-F2-6879 TCGA-F2-A44H TCGA-HZ-7919 TCGA-HZ-8005 TCGA-HZ-8636 TCGA-HZ-A4BH 
       10.98         5.19         0.66         3.91         0.16         5.98 
TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7646 TCGA-IB-7886 TCGA-IB-7891 TCGA-IB-8127 
        1.51        11.41         4.77         4.04        16.04        17.13 
TCGA-IB-A5SP 
        9.83 

$`DEL PEAK 28(22Q13.31) WILD-TYPE`
TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-FB-A4P5 TCGA-FB-A545 
        9.96        11.84         7.07         5.03         0.13         0.03 
TCGA-H6-8124 TCGA-H6-A45N TCGA-HZ-7289 TCGA-HZ-7918 TCGA-HZ-7922 TCGA-HZ-7923 
       12.89         7.63         7.86         0.92         0.13         0.26 
TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8001 TCGA-HZ-8002 TCGA-HZ-8003 
       12.13        12.03         0.26         0.62         0.99         0.69 
TCGA-HZ-8315 TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H 
        0.92         0.49         0.10         2.96         0.76         1.02 
TCGA-IB-7645 TCGA-IB-7647 TCGA-IB-7649 TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 
       49.38        21.86        15.35        19.82        15.65        27.98 
TCGA-IB-7887 TCGA-IB-7888 TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7893 TCGA-IB-7897 
        3.58        43.79        15.78        19.66         3.85        15.95 
TCGA-IB-8126 TCGA-IB-A5SO TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST 
        0.56        10.82         7.20        15.12         0.26 

  DEL PEAK 28(22Q13.31) MUTATED DEL PEAK 28(22Q13.31) WILD-TYPE 
                           0.16                            0.03 
  DEL PEAK 28(22Q13.31) MUTATED DEL PEAK 28(22Q13.31) WILD-TYPE 
                          17.13                           49.38 
  DEL PEAK 28(22Q13.31) MUTATED DEL PEAK 28(22Q13.31) WILD-TYPE 
                           5.19                            7.07 
[1] "0.2 - 17.1 (5.2)" "0.0 - 49.4 (7.1)"
                     TCGA-F2-6879                      TCGA-F2-6880 
  "DEL PEAK 28(22Q13.31) MUTATED" "DEL PEAK 28(22Q13.31) WILD-TYPE" 
                     TCGA-F2-7273                      TCGA-F2-7276 
"DEL PEAK 28(22Q13.31) WILD-TYPE" "DEL PEAK 28(22Q13.31) WILD-TYPE" 
                     TCGA-F2-A44G                      TCGA-F2-A44H 
"DEL PEAK 28(22Q13.31) WILD-TYPE"   "DEL PEAK 28(22Q13.31) MUTATED" 
                     TCGA-FB-A4P5                      TCGA-FB-A545 
"DEL PEAK 28(22Q13.31) WILD-TYPE" "DEL PEAK 28(22Q13.31) WILD-TYPE" 
                     TCGA-H6-8124                      TCGA-H6-A45N 
"DEL PEAK 28(22Q13.31) WILD-TYPE" "DEL PEAK 28(22Q13.31) WILD-TYPE" 
                     TCGA-HZ-7289                      TCGA-HZ-7918 
"DEL PEAK 28(22Q13.31) WILD-TYPE" "DEL PEAK 28(22Q13.31) WILD-TYPE" 
                     TCGA-HZ-7919                      TCGA-HZ-7922 
  "DEL PEAK 28(22Q13.31) MUTATED" "DEL PEAK 28(22Q13.31) WILD-TYPE" 
                     TCGA-HZ-7923                      TCGA-HZ-7924 
"DEL PEAK 28(22Q13.31) WILD-TYPE" "DEL PEAK 28(22Q13.31) WILD-TYPE" 
                     TCGA-HZ-7925                      TCGA-HZ-7926 
"DEL PEAK 28(22Q13.31) WILD-TYPE" "DEL PEAK 28(22Q13.31) WILD-TYPE" 
                     TCGA-HZ-8001                      TCGA-HZ-8002 
"DEL PEAK 28(22Q13.31) WILD-TYPE" "DEL PEAK 28(22Q13.31) WILD-TYPE" 
                     TCGA-HZ-8003                      TCGA-HZ-8005 
"DEL PEAK 28(22Q13.31) WILD-TYPE"   "DEL PEAK 28(22Q13.31) MUTATED" 
                     TCGA-HZ-8315                      TCGA-HZ-8317 
"DEL PEAK 28(22Q13.31) WILD-TYPE" "DEL PEAK 28(22Q13.31) WILD-TYPE" 
                     TCGA-HZ-8519                      TCGA-HZ-8636 
"DEL PEAK 28(22Q13.31) WILD-TYPE"   "DEL PEAK 28(22Q13.31) MUTATED" 
                     TCGA-HZ-8638                      TCGA-HZ-A49G 
"DEL PEAK 28(22Q13.31) WILD-TYPE" "DEL PEAK 28(22Q13.31) WILD-TYPE" 
                     TCGA-HZ-A49H                      TCGA-HZ-A4BH 
"DEL PEAK 28(22Q13.31) WILD-TYPE"   "DEL PEAK 28(22Q13.31) MUTATED" 
                     TCGA-HZ-A4BK                      TCGA-IB-7644 
  "DEL PEAK 28(22Q13.31) MUTATED"   "DEL PEAK 28(22Q13.31) MUTATED" 
                     TCGA-IB-7645                      TCGA-IB-7646 
"DEL PEAK 28(22Q13.31) WILD-TYPE"   "DEL PEAK 28(22Q13.31) MUTATED" 
                     TCGA-IB-7647                      TCGA-IB-7649 
"DEL PEAK 28(22Q13.31) WILD-TYPE" "DEL PEAK 28(22Q13.31) WILD-TYPE" 
                     TCGA-IB-7651                      TCGA-IB-7652 
"DEL PEAK 28(22Q13.31) WILD-TYPE" "DEL PEAK 28(22Q13.31) WILD-TYPE" 
                     TCGA-IB-7885                      TCGA-IB-7886 
"DEL PEAK 28(22Q13.31) WILD-TYPE"   "DEL PEAK 28(22Q13.31) MUTATED" 
                     TCGA-IB-7887                      TCGA-IB-7888 
"DEL PEAK 28(22Q13.31) WILD-TYPE" "DEL PEAK 28(22Q13.31) WILD-TYPE" 
                     TCGA-IB-7889                      TCGA-IB-7890 
"DEL PEAK 28(22Q13.31) WILD-TYPE" "DEL PEAK 28(22Q13.31) WILD-TYPE" 
                     TCGA-IB-7891                      TCGA-IB-7893 
  "DEL PEAK 28(22Q13.31) MUTATED" "DEL PEAK 28(22Q13.31) WILD-TYPE" 
                     TCGA-IB-7897                      TCGA-IB-8126 
"DEL PEAK 28(22Q13.31) WILD-TYPE" "DEL PEAK 28(22Q13.31) WILD-TYPE" 
                     TCGA-IB-8127                      TCGA-IB-A5SO 
  "DEL PEAK 28(22Q13.31) MUTATED" "DEL PEAK 28(22Q13.31) WILD-TYPE" 
                     TCGA-IB-A5SP                      TCGA-IB-A5SQ 
  "DEL PEAK 28(22Q13.31) MUTATED" "DEL PEAK 28(22Q13.31) WILD-TYPE" 
                     TCGA-IB-A5SS                      TCGA-IB-A5ST 
"DEL PEAK 28(22Q13.31) WILD-TYPE" "DEL PEAK 28(22Q13.31) WILD-TYPE" 
                     TCGA-F2-6879                      TCGA-F2-6880 
  "DEL PEAK 28(22Q13.31) MUTATED" "DEL PEAK 28(22Q13.31) WILD-TYPE" 
                     TCGA-F2-7273                      TCGA-F2-7276 
"DEL PEAK 28(22Q13.31) WILD-TYPE" "DEL PEAK 28(22Q13.31) WILD-TYPE" 
                     TCGA-F2-A44G                      TCGA-F2-A44H 
"DEL PEAK 28(22Q13.31) WILD-TYPE"   "DEL PEAK 28(22Q13.31) MUTATED" 
                     TCGA-FB-A4P5                      TCGA-FB-A545 
"DEL PEAK 28(22Q13.31) WILD-TYPE" "DEL PEAK 28(22Q13.31) WILD-TYPE" 
                     TCGA-H6-8124                      TCGA-H6-A45N 
"DEL PEAK 28(22Q13.31) WILD-TYPE" "DEL PEAK 28(22Q13.31) WILD-TYPE" 
                     TCGA-HZ-7289                      TCGA-HZ-7918 
"DEL PEAK 28(22Q13.31) WILD-TYPE" "DEL PEAK 28(22Q13.31) WILD-TYPE" 
                     TCGA-HZ-7919                      TCGA-HZ-7922 
  "DEL PEAK 28(22Q13.31) MUTATED" "DEL PEAK 28(22Q13.31) WILD-TYPE" 
                     TCGA-HZ-7923                      TCGA-HZ-7924 
"DEL PEAK 28(22Q13.31) WILD-TYPE" "DEL PEAK 28(22Q13.31) WILD-TYPE" 
                     TCGA-HZ-7925                      TCGA-HZ-7926 
"DEL PEAK 28(22Q13.31) WILD-TYPE" "DEL PEAK 28(22Q13.31) WILD-TYPE" 
                     TCGA-HZ-8001                      TCGA-HZ-8002 
"DEL PEAK 28(22Q13.31) WILD-TYPE" "DEL PEAK 28(22Q13.31) WILD-TYPE" 
                     TCGA-HZ-8003                      TCGA-HZ-8005 
"DEL PEAK 28(22Q13.31) WILD-TYPE"   "DEL PEAK 28(22Q13.31) MUTATED" 
                     TCGA-HZ-8315                      TCGA-HZ-8317 
"DEL PEAK 28(22Q13.31) WILD-TYPE" "DEL PEAK 28(22Q13.31) WILD-TYPE" 
                     TCGA-HZ-8519                      TCGA-HZ-8636 
"DEL PEAK 28(22Q13.31) WILD-TYPE"   "DEL PEAK 28(22Q13.31) MUTATED" 
                     TCGA-HZ-8638                      TCGA-HZ-A49G 
"DEL PEAK 28(22Q13.31) WILD-TYPE" "DEL PEAK 28(22Q13.31) WILD-TYPE" 
                     TCGA-HZ-A49H                      TCGA-HZ-A4BH 
"DEL PEAK 28(22Q13.31) WILD-TYPE"   "DEL PEAK 28(22Q13.31) MUTATED" 
                     TCGA-HZ-A4BK                      TCGA-IB-7644 
  "DEL PEAK 28(22Q13.31) MUTATED"   "DEL PEAK 28(22Q13.31) MUTATED" 
                     TCGA-IB-7645                      TCGA-IB-7646 
"DEL PEAK 28(22Q13.31) WILD-TYPE"   "DEL PEAK 28(22Q13.31) MUTATED" 
                     TCGA-IB-7647                      TCGA-IB-7649 
"DEL PEAK 28(22Q13.31) WILD-TYPE" "DEL PEAK 28(22Q13.31) WILD-TYPE" 
                     TCGA-IB-7651                      TCGA-IB-7652 
"DEL PEAK 28(22Q13.31) WILD-TYPE" "DEL PEAK 28(22Q13.31) WILD-TYPE" 
                     TCGA-IB-7885                      TCGA-IB-7886 
"DEL PEAK 28(22Q13.31) WILD-TYPE"   "DEL PEAK 28(22Q13.31) MUTATED" 
                     TCGA-IB-7887                      TCGA-IB-7888 
"DEL PEAK 28(22Q13.31) WILD-TYPE" "DEL PEAK 28(22Q13.31) WILD-TYPE" 
                     TCGA-IB-7889                      TCGA-IB-7890 
"DEL PEAK 28(22Q13.31) WILD-TYPE" "DEL PEAK 28(22Q13.31) WILD-TYPE" 
                     TCGA-IB-7891                      TCGA-IB-7893 
  "DEL PEAK 28(22Q13.31) MUTATED" "DEL PEAK 28(22Q13.31) WILD-TYPE" 
                     TCGA-IB-7897                      TCGA-IB-8126 
"DEL PEAK 28(22Q13.31) WILD-TYPE" "DEL PEAK 28(22Q13.31) WILD-TYPE" 
                     TCGA-IB-8127                      TCGA-IB-A5SO 
  "DEL PEAK 28(22Q13.31) MUTATED" "DEL PEAK 28(22Q13.31) WILD-TYPE" 
                     TCGA-IB-A5SP                      TCGA-IB-A5SQ 
  "DEL PEAK 28(22Q13.31) MUTATED" "DEL PEAK 28(22Q13.31) WILD-TYPE" 
                     TCGA-IB-A5SS                      TCGA-IB-A5ST 
"DEL PEAK 28(22Q13.31) WILD-TYPE" "DEL PEAK 28(22Q13.31) WILD-TYPE" 
                     TCGA-F2-6879                      TCGA-F2-6880 
  "DEL PEAK 28(22Q13.31) MUTATED" "DEL PEAK 28(22Q13.31) WILD-TYPE" 
                     TCGA-F2-7273                      TCGA-F2-7276 
"DEL PEAK 28(22Q13.31) WILD-TYPE" "DEL PEAK 28(22Q13.31) WILD-TYPE" 
                     TCGA-F2-A44G                      TCGA-F2-A44H 
"DEL PEAK 28(22Q13.31) WILD-TYPE"   "DEL PEAK 28(22Q13.31) MUTATED" 
                     TCGA-FB-A4P5                      TCGA-FB-A545 
"DEL PEAK 28(22Q13.31) WILD-TYPE" "DEL PEAK 28(22Q13.31) WILD-TYPE" 
                     TCGA-H6-8124                      TCGA-H6-A45N 
"DEL PEAK 28(22Q13.31) WILD-TYPE" "DEL PEAK 28(22Q13.31) WILD-TYPE" 
                     TCGA-HZ-7289                      TCGA-HZ-7918 
"DEL PEAK 28(22Q13.31) WILD-TYPE" "DEL PEAK 28(22Q13.31) WILD-TYPE" 
                     TCGA-HZ-7919                      TCGA-HZ-7922 
  "DEL PEAK 28(22Q13.31) MUTATED" "DEL PEAK 28(22Q13.31) WILD-TYPE" 
                     TCGA-HZ-7923                      TCGA-HZ-7924 
"DEL PEAK 28(22Q13.31) WILD-TYPE" "DEL PEAK 28(22Q13.31) WILD-TYPE" 
                     TCGA-HZ-7925                      TCGA-HZ-7926 
"DEL PEAK 28(22Q13.31) WILD-TYPE" "DEL PEAK 28(22Q13.31) WILD-TYPE" 
                     TCGA-HZ-8001                      TCGA-HZ-8002 
"DEL PEAK 28(22Q13.31) WILD-TYPE" "DEL PEAK 28(22Q13.31) WILD-TYPE" 
                     TCGA-HZ-8003                      TCGA-HZ-8005 
"DEL PEAK 28(22Q13.31) WILD-TYPE"   "DEL PEAK 28(22Q13.31) MUTATED" 
                     TCGA-HZ-8315                      TCGA-HZ-8317 
"DEL PEAK 28(22Q13.31) WILD-TYPE" "DEL PEAK 28(22Q13.31) WILD-TYPE" 
                     TCGA-HZ-8519                      TCGA-HZ-8636 
"DEL PEAK 28(22Q13.31) WILD-TYPE"   "DEL PEAK 28(22Q13.31) MUTATED" 
                     TCGA-HZ-8638                      TCGA-HZ-A49G 
"DEL PEAK 28(22Q13.31) WILD-TYPE" "DEL PEAK 28(22Q13.31) WILD-TYPE" 
                     TCGA-HZ-A49H                      TCGA-HZ-A4BH 
"DEL PEAK 28(22Q13.31) WILD-TYPE"   "DEL PEAK 28(22Q13.31) MUTATED" 
                     TCGA-HZ-A4BK                      TCGA-IB-7644 
  "DEL PEAK 28(22Q13.31) MUTATED"   "DEL PEAK 28(22Q13.31) MUTATED" 
                     TCGA-IB-7645                      TCGA-IB-7646 
"DEL PEAK 28(22Q13.31) WILD-TYPE"   "DEL PEAK 28(22Q13.31) MUTATED" 
                     TCGA-IB-7647                      TCGA-IB-7649 
"DEL PEAK 28(22Q13.31) WILD-TYPE" "DEL PEAK 28(22Q13.31) WILD-TYPE" 
                     TCGA-IB-7651                      TCGA-IB-7652 
"DEL PEAK 28(22Q13.31) WILD-TYPE" "DEL PEAK 28(22Q13.31) WILD-TYPE" 
                     TCGA-IB-7885                      TCGA-IB-7886 
"DEL PEAK 28(22Q13.31) WILD-TYPE"   "DEL PEAK 28(22Q13.31) MUTATED" 
                     TCGA-IB-7887                      TCGA-IB-7888 
"DEL PEAK 28(22Q13.31) WILD-TYPE" "DEL PEAK 28(22Q13.31) WILD-TYPE" 
                     TCGA-IB-7889                      TCGA-IB-7890 
"DEL PEAK 28(22Q13.31) WILD-TYPE" "DEL PEAK 28(22Q13.31) WILD-TYPE" 
                     TCGA-IB-7891                      TCGA-IB-7893 
  "DEL PEAK 28(22Q13.31) MUTATED" "DEL PEAK 28(22Q13.31) WILD-TYPE" 
                     TCGA-IB-7897                      TCGA-IB-8126 
"DEL PEAK 28(22Q13.31) WILD-TYPE" "DEL PEAK 28(22Q13.31) WILD-TYPE" 
                     TCGA-IB-8127                      TCGA-IB-A5SO 
  "DEL PEAK 28(22Q13.31) MUTATED" "DEL PEAK 28(22Q13.31) WILD-TYPE" 
                     TCGA-IB-A5SP                      TCGA-IB-A5SQ 
  "DEL PEAK 28(22Q13.31) MUTATED" "DEL PEAK 28(22Q13.31) WILD-TYPE" 
                     TCGA-IB-A5SS                      TCGA-IB-A5ST 
"DEL PEAK 28(22Q13.31) WILD-TYPE" "DEL PEAK 28(22Q13.31) WILD-TYPE" 
[1] "hr=" "1.4"
D45V2, continuous
                                 vv
clus                              STAGE IA STAGE IB STAGE IIA STAGE IIB
  DEL PEAK 28(22Q13.31) MUTATED          0        0         2         9
  DEL PEAK 28(22Q13.31) WILD-TYPE        2        3         5        32
                                 vv
clus                              STAGE III STAGE IV
  DEL PEAK 28(22Q13.31) MUTATED           0        2
  DEL PEAK 28(22Q13.31) WILD-TYPE         2        0
D45V3, multiclass
                                 vv
clus                              T1+T2 T3+T4
  DEL PEAK 28(22Q13.31) MUTATED       0    13
  DEL PEAK 28(22Q13.31) WILD-TYPE     6    38
D45V4, multiclass
       clus
vv      DEL PEAK 28(22Q13.31) MUTATED DEL PEAK 28(22Q13.31) WILD-TYPE
  T1+T2                             0                               6
  T3+T4                            13                              38
D45V5, binary
                                 cls
clus                               0  1
  DEL PEAK 28(22Q13.31) MUTATED    3 10
  DEL PEAK 28(22Q13.31) WILD-TYPE 11 33
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 28(22Q13.31) MUTATED      3   10
  DEL PEAK 28(22Q13.31) WILD-TYPE   11   33
   clus
vv  DEL PEAK 28(22Q13.31) MUTATED DEL PEAK 28(22Q13.31) WILD-TYPE
  0                             3                              11
  1                            10                              33
                                 vv
clus                              M0 M1 MX
  DEL PEAK 28(22Q13.31) MUTATED    8  2  3
  DEL PEAK 28(22Q13.31) WILD-TYPE 24  0 20
D45V6, multiclass
    clus
vv   DEL PEAK 28(22Q13.31) MUTATED DEL PEAK 28(22Q13.31) WILD-TYPE
  M0                             8                              24
  M1                             2                               0
  MX                             3                              20
D45V7, binary
                                 cls
clus                               0  1
  DEL PEAK 28(22Q13.31) MUTATED    3 10
  DEL PEAK 28(22Q13.31) WILD-TYPE 28 16
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 28(22Q13.31) MUTATED      3   10
  DEL PEAK 28(22Q13.31) WILD-TYPE   28   16
        clus
vv       DEL PEAK 28(22Q13.31) MUTATED DEL PEAK 28(22Q13.31) WILD-TYPE
  FEMALE                             3                              28
  MALE                              10                              16
                                 vv
clus                              PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  DEL PEAK 28(22Q13.31) MUTATED                                    11
  DEL PEAK 28(22Q13.31) WILD-TYPE                                  40
                                 vv
clus                              PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  DEL PEAK 28(22Q13.31) MUTATED                                       1
  DEL PEAK 28(22Q13.31) WILD-TYPE                                     3
                                 vv
clus                              PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  DEL PEAK 28(22Q13.31) MUTATED                                                  0
  DEL PEAK 28(22Q13.31) WILD-TYPE                                                1
D45V8, multiclass
                                                  clus
vv                                                 DEL PEAK 28(22Q13.31) MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                         11
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                        1
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                             0
                                                  clus
vv                                                 DEL PEAK 28(22Q13.31) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                           40
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                          3
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                               1
D45V9, continuous
D45V10, continuous
                                 vv
clus                              R0 R1 RX
  DEL PEAK 28(22Q13.31) MUTATED    3 10  0
  DEL PEAK 28(22Q13.31) WILD-TYPE 29 11  2
D45V11, multiclass
    clus
vv   DEL PEAK 28(22Q13.31) MUTATED DEL PEAK 28(22Q13.31) WILD-TYPE
  R0                             3                              29
  R1                            10                              11
  RX                             0                               2
D45V12, continuous

Clustering(46) Variable = DEL PEAK 29(XP22.2) MUTATION ANALYSIS
D46V1, survival
                               sevent
clus2                            0  1
  DEL PEAK 29(XP22.2) MUTATED    4  2
  DEL PEAK 29(XP22.2) WILD-TYPE 31 17
  DEL PEAK 29(XP22.2) MUTATED DEL PEAK 29(XP22.2) WILD-TYPE 
                            6                            48 
  DEL PEAK 29(XP22.2) MUTATED DEL PEAK 29(XP22.2) WILD-TYPE 
                            2                            17 
$`DEL PEAK 29(XP22.2) MUTATED`
TCGA-H6-8124 TCGA-HZ-7918 TCGA-HZ-7922 TCGA-HZ-8001 TCGA-HZ-8005 TCGA-IB-7646 
       12.89         0.92         0.13         0.62         3.91         4.77 

$`DEL PEAK 29(XP22.2) WILD-TYPE`
TCGA-F2-6879 TCGA-F2-6880 TCGA-F2-7273 TCGA-F2-7276 TCGA-F2-A44G TCGA-F2-A44H 
       10.98         9.96        11.84         7.07         5.03         5.19 
TCGA-FB-A4P5 TCGA-FB-A545 TCGA-H6-A45N TCGA-HZ-7289 TCGA-HZ-7919 TCGA-HZ-7923 
        0.13         0.03         7.63         7.86         0.66         0.26 
TCGA-HZ-7924 TCGA-HZ-7925 TCGA-HZ-7926 TCGA-HZ-8002 TCGA-HZ-8003 TCGA-HZ-8315 
       12.13        12.03         0.26         0.99         0.69         0.92 
TCGA-HZ-8317 TCGA-HZ-8519 TCGA-HZ-8636 TCGA-HZ-8638 TCGA-HZ-A49G TCGA-HZ-A49H 
        0.49         0.10         0.16         2.96         0.76         1.02 
TCGA-HZ-A4BH TCGA-HZ-A4BK TCGA-IB-7644 TCGA-IB-7645 TCGA-IB-7647 TCGA-IB-7649 
        5.98         1.51        11.41        49.38        21.86        15.35 
TCGA-IB-7651 TCGA-IB-7652 TCGA-IB-7885 TCGA-IB-7886 TCGA-IB-7887 TCGA-IB-7888 
       19.82        15.65        27.98         4.04         3.58        43.79 
TCGA-IB-7889 TCGA-IB-7890 TCGA-IB-7891 TCGA-IB-7893 TCGA-IB-7897 TCGA-IB-8126 
       15.78        19.66        16.04         3.85        15.95         0.56 
TCGA-IB-8127 TCGA-IB-A5SO TCGA-IB-A5SP TCGA-IB-A5SQ TCGA-IB-A5SS TCGA-IB-A5ST 
       17.13        10.82         9.83         7.20        15.12         0.26 

  DEL PEAK 29(XP22.2) MUTATED DEL PEAK 29(XP22.2) WILD-TYPE 
                         0.13                          0.03 
  DEL PEAK 29(XP22.2) MUTATED DEL PEAK 29(XP22.2) WILD-TYPE 
                        12.89                         49.38 
  DEL PEAK 29(XP22.2) MUTATED DEL PEAK 29(XP22.2) WILD-TYPE 
                        2.415                         7.135 
[1] "0.1 - 12.9 (2.4)" "0.0 - 49.4 (7.1)"
                   TCGA-F2-6879                    TCGA-F2-6880 
"DEL PEAK 29(XP22.2) WILD-TYPE" "DEL PEAK 29(XP22.2) WILD-TYPE" 
                   TCGA-F2-7273                    TCGA-F2-7276 
"DEL PEAK 29(XP22.2) WILD-TYPE" "DEL PEAK 29(XP22.2) WILD-TYPE" 
                   TCGA-F2-A44G                    TCGA-F2-A44H 
"DEL PEAK 29(XP22.2) WILD-TYPE" "DEL PEAK 29(XP22.2) WILD-TYPE" 
                   TCGA-FB-A4P5                    TCGA-FB-A545 
"DEL PEAK 29(XP22.2) WILD-TYPE" "DEL PEAK 29(XP22.2) WILD-TYPE" 
                   TCGA-H6-8124                    TCGA-H6-A45N 
  "DEL PEAK 29(XP22.2) MUTATED" "DEL PEAK 29(XP22.2) WILD-TYPE" 
                   TCGA-HZ-7289                    TCGA-HZ-7918 
"DEL PEAK 29(XP22.2) WILD-TYPE"   "DEL PEAK 29(XP22.2) MUTATED" 
                   TCGA-HZ-7919                    TCGA-HZ-7922 
"DEL PEAK 29(XP22.2) WILD-TYPE"   "DEL PEAK 29(XP22.2) MUTATED" 
                   TCGA-HZ-7923                    TCGA-HZ-7924 
"DEL PEAK 29(XP22.2) WILD-TYPE" "DEL PEAK 29(XP22.2) WILD-TYPE" 
                   TCGA-HZ-7925                    TCGA-HZ-7926 
"DEL PEAK 29(XP22.2) WILD-TYPE" "DEL PEAK 29(XP22.2) WILD-TYPE" 
                   TCGA-HZ-8001                    TCGA-HZ-8002 
  "DEL PEAK 29(XP22.2) MUTATED" "DEL PEAK 29(XP22.2) WILD-TYPE" 
                   TCGA-HZ-8003                    TCGA-HZ-8005 
"DEL PEAK 29(XP22.2) WILD-TYPE"   "DEL PEAK 29(XP22.2) MUTATED" 
                   TCGA-HZ-8315                    TCGA-HZ-8317 
"DEL PEAK 29(XP22.2) WILD-TYPE" "DEL PEAK 29(XP22.2) WILD-TYPE" 
                   TCGA-HZ-8519                    TCGA-HZ-8636 
"DEL PEAK 29(XP22.2) WILD-TYPE" "DEL PEAK 29(XP22.2) WILD-TYPE" 
                   TCGA-HZ-8638                    TCGA-HZ-A49G 
"DEL PEAK 29(XP22.2) WILD-TYPE" "DEL PEAK 29(XP22.2) WILD-TYPE" 
                   TCGA-HZ-A49H                    TCGA-HZ-A4BH 
"DEL PEAK 29(XP22.2) WILD-TYPE" "DEL PEAK 29(XP22.2) WILD-TYPE" 
                   TCGA-HZ-A4BK                    TCGA-IB-7644 
"DEL PEAK 29(XP22.2) WILD-TYPE" "DEL PEAK 29(XP22.2) WILD-TYPE" 
                   TCGA-IB-7645                    TCGA-IB-7646 
"DEL PEAK 29(XP22.2) WILD-TYPE"   "DEL PEAK 29(XP22.2) MUTATED" 
                   TCGA-IB-7647                    TCGA-IB-7649 
"DEL PEAK 29(XP22.2) WILD-TYPE" "DEL PEAK 29(XP22.2) WILD-TYPE" 
                   TCGA-IB-7651                    TCGA-IB-7652 
"DEL PEAK 29(XP22.2) WILD-TYPE" "DEL PEAK 29(XP22.2) WILD-TYPE" 
                   TCGA-IB-7885                    TCGA-IB-7886 
"DEL PEAK 29(XP22.2) WILD-TYPE" "DEL PEAK 29(XP22.2) WILD-TYPE" 
                   TCGA-IB-7887                    TCGA-IB-7888 
"DEL PEAK 29(XP22.2) WILD-TYPE" "DEL PEAK 29(XP22.2) WILD-TYPE" 
                   TCGA-IB-7889                    TCGA-IB-7890 
"DEL PEAK 29(XP22.2) WILD-TYPE" "DEL PEAK 29(XP22.2) WILD-TYPE" 
                   TCGA-IB-7891                    TCGA-IB-7893 
"DEL PEAK 29(XP22.2) WILD-TYPE" "DEL PEAK 29(XP22.2) WILD-TYPE" 
                   TCGA-IB-7897                    TCGA-IB-8126 
"DEL PEAK 29(XP22.2) WILD-TYPE" "DEL PEAK 29(XP22.2) WILD-TYPE" 
                   TCGA-IB-8127                    TCGA-IB-A5SO 
"DEL PEAK 29(XP22.2) WILD-TYPE" "DEL PEAK 29(XP22.2) WILD-TYPE" 
                   TCGA-IB-A5SP                    TCGA-IB-A5SQ 
"DEL PEAK 29(XP22.2) WILD-TYPE" "DEL PEAK 29(XP22.2) WILD-TYPE" 
                   TCGA-IB-A5SS                    TCGA-IB-A5ST 
"DEL PEAK 29(XP22.2) WILD-TYPE" "DEL PEAK 29(XP22.2) WILD-TYPE" 
                   TCGA-F2-6879                    TCGA-F2-6880 
"DEL PEAK 29(XP22.2) WILD-TYPE" "DEL PEAK 29(XP22.2) WILD-TYPE" 
                   TCGA-F2-7273                    TCGA-F2-7276 
"DEL PEAK 29(XP22.2) WILD-TYPE" "DEL PEAK 29(XP22.2) WILD-TYPE" 
                   TCGA-F2-A44G                    TCGA-F2-A44H 
"DEL PEAK 29(XP22.2) WILD-TYPE" "DEL PEAK 29(XP22.2) WILD-TYPE" 
                   TCGA-FB-A4P5                    TCGA-FB-A545 
"DEL PEAK 29(XP22.2) WILD-TYPE" "DEL PEAK 29(XP22.2) WILD-TYPE" 
                   TCGA-H6-8124                    TCGA-H6-A45N 
  "DEL PEAK 29(XP22.2) MUTATED" "DEL PEAK 29(XP22.2) WILD-TYPE" 
                   TCGA-HZ-7289                    TCGA-HZ-7918 
"DEL PEAK 29(XP22.2) WILD-TYPE"   "DEL PEAK 29(XP22.2) MUTATED" 
                   TCGA-HZ-7919                    TCGA-HZ-7922 
"DEL PEAK 29(XP22.2) WILD-TYPE"   "DEL PEAK 29(XP22.2) MUTATED" 
                   TCGA-HZ-7923                    TCGA-HZ-7924 
"DEL PEAK 29(XP22.2) WILD-TYPE" "DEL PEAK 29(XP22.2) WILD-TYPE" 
                   TCGA-HZ-7925                    TCGA-HZ-7926 
"DEL PEAK 29(XP22.2) WILD-TYPE" "DEL PEAK 29(XP22.2) WILD-TYPE" 
                   TCGA-HZ-8001                    TCGA-HZ-8002 
  "DEL PEAK 29(XP22.2) MUTATED" "DEL PEAK 29(XP22.2) WILD-TYPE" 
                   TCGA-HZ-8003                    TCGA-HZ-8005 
"DEL PEAK 29(XP22.2) WILD-TYPE"   "DEL PEAK 29(XP22.2) MUTATED" 
                   TCGA-HZ-8315                    TCGA-HZ-8317 
"DEL PEAK 29(XP22.2) WILD-TYPE" "DEL PEAK 29(XP22.2) WILD-TYPE" 
                   TCGA-HZ-8519                    TCGA-HZ-8636 
"DEL PEAK 29(XP22.2) WILD-TYPE" "DEL PEAK 29(XP22.2) WILD-TYPE" 
                   TCGA-HZ-8638                    TCGA-HZ-A49G 
"DEL PEAK 29(XP22.2) WILD-TYPE" "DEL PEAK 29(XP22.2) WILD-TYPE" 
                   TCGA-HZ-A49H                    TCGA-HZ-A4BH 
"DEL PEAK 29(XP22.2) WILD-TYPE" "DEL PEAK 29(XP22.2) WILD-TYPE" 
                   TCGA-HZ-A4BK                    TCGA-IB-7644 
"DEL PEAK 29(XP22.2) WILD-TYPE" "DEL PEAK 29(XP22.2) WILD-TYPE" 
                   TCGA-IB-7645                    TCGA-IB-7646 
"DEL PEAK 29(XP22.2) WILD-TYPE"   "DEL PEAK 29(XP22.2) MUTATED" 
                   TCGA-IB-7647                    TCGA-IB-7649 
"DEL PEAK 29(XP22.2) WILD-TYPE" "DEL PEAK 29(XP22.2) WILD-TYPE" 
                   TCGA-IB-7651                    TCGA-IB-7652 
"DEL PEAK 29(XP22.2) WILD-TYPE" "DEL PEAK 29(XP22.2) WILD-TYPE" 
                   TCGA-IB-7885                    TCGA-IB-7886 
"DEL PEAK 29(XP22.2) WILD-TYPE" "DEL PEAK 29(XP22.2) WILD-TYPE" 
                   TCGA-IB-7887                    TCGA-IB-7888 
"DEL PEAK 29(XP22.2) WILD-TYPE" "DEL PEAK 29(XP22.2) WILD-TYPE" 
                   TCGA-IB-7889                    TCGA-IB-7890 
"DEL PEAK 29(XP22.2) WILD-TYPE" "DEL PEAK 29(XP22.2) WILD-TYPE" 
                   TCGA-IB-7891                    TCGA-IB-7893 
"DEL PEAK 29(XP22.2) WILD-TYPE" "DEL PEAK 29(XP22.2) WILD-TYPE" 
                   TCGA-IB-7897                    TCGA-IB-8126 
"DEL PEAK 29(XP22.2) WILD-TYPE" "DEL PEAK 29(XP22.2) WILD-TYPE" 
                   TCGA-IB-8127                    TCGA-IB-A5SO 
"DEL PEAK 29(XP22.2) WILD-TYPE" "DEL PEAK 29(XP22.2) WILD-TYPE" 
                   TCGA-IB-A5SP                    TCGA-IB-A5SQ 
"DEL PEAK 29(XP22.2) WILD-TYPE" "DEL PEAK 29(XP22.2) WILD-TYPE" 
                   TCGA-IB-A5SS                    TCGA-IB-A5ST 
"DEL PEAK 29(XP22.2) WILD-TYPE" "DEL PEAK 29(XP22.2) WILD-TYPE" 
                   TCGA-F2-6879                    TCGA-F2-6880 
"DEL PEAK 29(XP22.2) WILD-TYPE" "DEL PEAK 29(XP22.2) WILD-TYPE" 
                   TCGA-F2-7273                    TCGA-F2-7276 
"DEL PEAK 29(XP22.2) WILD-TYPE" "DEL PEAK 29(XP22.2) WILD-TYPE" 
                   TCGA-F2-A44G                    TCGA-F2-A44H 
"DEL PEAK 29(XP22.2) WILD-TYPE" "DEL PEAK 29(XP22.2) WILD-TYPE" 
                   TCGA-FB-A4P5                    TCGA-FB-A545 
"DEL PEAK 29(XP22.2) WILD-TYPE" "DEL PEAK 29(XP22.2) WILD-TYPE" 
                   TCGA-H6-8124                    TCGA-H6-A45N 
  "DEL PEAK 29(XP22.2) MUTATED" "DEL PEAK 29(XP22.2) WILD-TYPE" 
                   TCGA-HZ-7289                    TCGA-HZ-7918 
"DEL PEAK 29(XP22.2) WILD-TYPE"   "DEL PEAK 29(XP22.2) MUTATED" 
                   TCGA-HZ-7919                    TCGA-HZ-7922 
"DEL PEAK 29(XP22.2) WILD-TYPE"   "DEL PEAK 29(XP22.2) MUTATED" 
                   TCGA-HZ-7923                    TCGA-HZ-7924 
"DEL PEAK 29(XP22.2) WILD-TYPE" "DEL PEAK 29(XP22.2) WILD-TYPE" 
                   TCGA-HZ-7925                    TCGA-HZ-7926 
"DEL PEAK 29(XP22.2) WILD-TYPE" "DEL PEAK 29(XP22.2) WILD-TYPE" 
                   TCGA-HZ-8001                    TCGA-HZ-8002 
  "DEL PEAK 29(XP22.2) MUTATED" "DEL PEAK 29(XP22.2) WILD-TYPE" 
                   TCGA-HZ-8003                    TCGA-HZ-8005 
"DEL PEAK 29(XP22.2) WILD-TYPE"   "DEL PEAK 29(XP22.2) MUTATED" 
                   TCGA-HZ-8315                    TCGA-HZ-8317 
"DEL PEAK 29(XP22.2) WILD-TYPE" "DEL PEAK 29(XP22.2) WILD-TYPE" 
                   TCGA-HZ-8519                    TCGA-HZ-8636 
"DEL PEAK 29(XP22.2) WILD-TYPE" "DEL PEAK 29(XP22.2) WILD-TYPE" 
                   TCGA-HZ-8638                    TCGA-HZ-A49G 
"DEL PEAK 29(XP22.2) WILD-TYPE" "DEL PEAK 29(XP22.2) WILD-TYPE" 
                   TCGA-HZ-A49H                    TCGA-HZ-A4BH 
"DEL PEAK 29(XP22.2) WILD-TYPE" "DEL PEAK 29(XP22.2) WILD-TYPE" 
                   TCGA-HZ-A4BK                    TCGA-IB-7644 
"DEL PEAK 29(XP22.2) WILD-TYPE" "DEL PEAK 29(XP22.2) WILD-TYPE" 
                   TCGA-IB-7645                    TCGA-IB-7646 
"DEL PEAK 29(XP22.2) WILD-TYPE"   "DEL PEAK 29(XP22.2) MUTATED" 
                   TCGA-IB-7647                    TCGA-IB-7649 
"DEL PEAK 29(XP22.2) WILD-TYPE" "DEL PEAK 29(XP22.2) WILD-TYPE" 
                   TCGA-IB-7651                    TCGA-IB-7652 
"DEL PEAK 29(XP22.2) WILD-TYPE" "DEL PEAK 29(XP22.2) WILD-TYPE" 
                   TCGA-IB-7885                    TCGA-IB-7886 
"DEL PEAK 29(XP22.2) WILD-TYPE" "DEL PEAK 29(XP22.2) WILD-TYPE" 
                   TCGA-IB-7887                    TCGA-IB-7888 
"DEL PEAK 29(XP22.2) WILD-TYPE" "DEL PEAK 29(XP22.2) WILD-TYPE" 
                   TCGA-IB-7889                    TCGA-IB-7890 
"DEL PEAK 29(XP22.2) WILD-TYPE" "DEL PEAK 29(XP22.2) WILD-TYPE" 
                   TCGA-IB-7891                    TCGA-IB-7893 
"DEL PEAK 29(XP22.2) WILD-TYPE" "DEL PEAK 29(XP22.2) WILD-TYPE" 
                   TCGA-IB-7897                    TCGA-IB-8126 
"DEL PEAK 29(XP22.2) WILD-TYPE" "DEL PEAK 29(XP22.2) WILD-TYPE" 
                   TCGA-IB-8127                    TCGA-IB-A5SO 
"DEL PEAK 29(XP22.2) WILD-TYPE" "DEL PEAK 29(XP22.2) WILD-TYPE" 
                   TCGA-IB-A5SP                    TCGA-IB-A5SQ 
"DEL PEAK 29(XP22.2) WILD-TYPE" "DEL PEAK 29(XP22.2) WILD-TYPE" 
                   TCGA-IB-A5SS                    TCGA-IB-A5ST 
"DEL PEAK 29(XP22.2) WILD-TYPE" "DEL PEAK 29(XP22.2) WILD-TYPE" 
[1] "hr=" "3.7"
D46V2, continuous
                               vv
clus                            STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE III
  DEL PEAK 29(XP22.2) MUTATED          0        0         0         6         1
  DEL PEAK 29(XP22.2) WILD-TYPE        2        3         7        35         1
                               vv
clus                            STAGE IV
  DEL PEAK 29(XP22.2) MUTATED          0
  DEL PEAK 29(XP22.2) WILD-TYPE        2
D46V3, multiclass
                               vv
clus                            T1+T2 T3+T4
  DEL PEAK 29(XP22.2) MUTATED       0     7
  DEL PEAK 29(XP22.2) WILD-TYPE     6    44
D46V4, multiclass
       clus
vv      DEL PEAK 29(XP22.2) MUTATED DEL PEAK 29(XP22.2) WILD-TYPE
  T1+T2                           0                             6
  T3+T4                           7                            44
D46V5, binary
                               cls
clus                             0  1
  DEL PEAK 29(XP22.2) MUTATED    1  6
  DEL PEAK 29(XP22.2) WILD-TYPE 13 37
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 29(XP22.2) MUTATED      1    6
  DEL PEAK 29(XP22.2) WILD-TYPE   13   37
   clus
vv  DEL PEAK 29(XP22.2) MUTATED DEL PEAK 29(XP22.2) WILD-TYPE
  0                           1                            13
  1                           6                            37
                               vv
clus                            M0 M1 MX
  DEL PEAK 29(XP22.2) MUTATED    3  0  4
  DEL PEAK 29(XP22.2) WILD-TYPE 29  2 19
D46V6, multiclass
    clus
vv   DEL PEAK 29(XP22.2) MUTATED DEL PEAK 29(XP22.2) WILD-TYPE
  M0                           3                            29
  M1                           0                             2
  MX                           4                            19
D46V7, binary
                               cls
clus                             0  1
  DEL PEAK 29(XP22.2) MUTATED    3  4
  DEL PEAK 29(XP22.2) WILD-TYPE 28 22
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 29(XP22.2) MUTATED      3    4
  DEL PEAK 29(XP22.2) WILD-TYPE   28   22
        clus
vv       DEL PEAK 29(XP22.2) MUTATED DEL PEAK 29(XP22.2) WILD-TYPE
  FEMALE                           3                            28
  MALE                             4                            22
                               vv
clus                            PANCREAS-ADENOCARCINOMA DUCTAL TYPE
  DEL PEAK 29(XP22.2) MUTATED                                     7
  DEL PEAK 29(XP22.2) WILD-TYPE                                  44
                               vv
clus                            PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE
  DEL PEAK 29(XP22.2) MUTATED                                       0
  DEL PEAK 29(XP22.2) WILD-TYPE                                     4
                               vv
clus                            PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA
  DEL PEAK 29(XP22.2) MUTATED                                                  0
  DEL PEAK 29(XP22.2) WILD-TYPE                                                1
D46V8, multiclass
                                                  clus
vv                                                 DEL PEAK 29(XP22.2) MUTATED
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                        7
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                      0
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                           0
                                                  clus
vv                                                 DEL PEAK 29(XP22.2) WILD-TYPE
  PANCREAS-ADENOCARCINOMA DUCTAL TYPE                                         44
  PANCREAS-ADENOCARCINOMA-OTHER SUBTYPE                                        4
  PANCREAS-COLLOID (MUCINOUS NON-CYSTIC) CARCINOMA                             1
D46V9, continuous
[1] "Remove cluster labels:"      "DEL PEAK 29(XP22.2) MUTATED"
clus
  DEL PEAK 29(XP22.2) MUTATED DEL PEAK 29(XP22.2) WILD-TYPE 
                            1                            13 
                   TCGA-F2-6880                    TCGA-FB-A4P5 
"DEL PEAK 29(XP22.2) WILD-TYPE" "DEL PEAK 29(XP22.2) WILD-TYPE" 
                   TCGA-H6-A45N                    TCGA-IB-7644 
"DEL PEAK 29(XP22.2) WILD-TYPE" "DEL PEAK 29(XP22.2) WILD-TYPE" 
                   TCGA-IB-7649                    TCGA-IB-7651 
"DEL PEAK 29(XP22.2) WILD-TYPE" "DEL PEAK 29(XP22.2) WILD-TYPE" 
                   TCGA-IB-7885                    TCGA-IB-7886 
"DEL PEAK 29(XP22.2) WILD-TYPE" "DEL PEAK 29(XP22.2) WILD-TYPE" 
                   TCGA-IB-7887                    TCGA-IB-7891 
"DEL PEAK 29(XP22.2) WILD-TYPE" "DEL PEAK 29(XP22.2) WILD-TYPE" 
                   TCGA-IB-8126                    TCGA-IB-8127 
"DEL PEAK 29(XP22.2) WILD-TYPE" "DEL PEAK 29(XP22.2) WILD-TYPE" 
                   TCGA-IB-A5SS 
"DEL PEAK 29(XP22.2) WILD-TYPE" 
D46V10, continuous
[1] "Remove cluster labels:"      "DEL PEAK 29(XP22.2) MUTATED"
clus
  DEL PEAK 29(XP22.2) MUTATED DEL PEAK 29(XP22.2) WILD-TYPE 
                            1                            10 
                   TCGA-FB-A4P5                    TCGA-IB-7644 
"DEL PEAK 29(XP22.2) WILD-TYPE" "DEL PEAK 29(XP22.2) WILD-TYPE" 
                   TCGA-IB-7649                    TCGA-IB-7651 
"DEL PEAK 29(XP22.2) WILD-TYPE" "DEL PEAK 29(XP22.2) WILD-TYPE" 
                   TCGA-IB-7885                    TCGA-IB-7886 
"DEL PEAK 29(XP22.2) WILD-TYPE" "DEL PEAK 29(XP22.2) WILD-TYPE" 
                   TCGA-IB-7891                    TCGA-IB-8126 
"DEL PEAK 29(XP22.2) WILD-TYPE" "DEL PEAK 29(XP22.2) WILD-TYPE" 
                   TCGA-IB-8127                    TCGA-IB-A5SS 
"DEL PEAK 29(XP22.2) WILD-TYPE" "DEL PEAK 29(XP22.2) WILD-TYPE" 
                               vv
clus                            R0 R1 RX
  DEL PEAK 29(XP22.2) MUTATED    5  2  0
  DEL PEAK 29(XP22.2) WILD-TYPE 27 19  2
D46V11, multiclass
    clus
vv   DEL PEAK 29(XP22.2) MUTATED DEL PEAK 29(XP22.2) WILD-TYPE
  R0                           5                            27
  R1                           2                            19
  RX                           0                             2
D46V12, continuous
> q(save="no")
