
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/13/Correlate_Genomic_Events.R")
> result <- main("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/13/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-tTRUE", "-iD=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/PAAD-TP/6159735/transformed.cor.cli.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/PAAD-TP/6159668/PAAD-TP.transferedmergedcluster.txt", "-fF=", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=0.05", "-cQ=0.25", "-MF=ONLYSIG", "-oT=PAAD-TP", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "terrence_modification_tag"
[1] TRUE
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"         "-oT=PAAD-TP"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/PAAD-TP/6159668/PAAD-TP.transferedmergedcluster.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/PAAD-TP/6159735/transformed.cor.cli.txt"

nPatients in clinical file=92, in cluster file=81, common to both=81
[1] "Reduce the number of clustering variables from 80 to 68."
[1] 68 81
[1] "1P GAIN MUTATION ANALYSIS"
[1] 3
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
                6                75 
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
                6                75 
[1] "1Q GAIN MUTATION ANALYSIS"
[1] 3
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
               19                62 
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
               19                62 
[1] "2P GAIN MUTATION ANALYSIS"
[1] 3
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
                6                75 
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
                6                75 
[1] "2Q GAIN MUTATION ANALYSIS"
[1] 3
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
                7                74 
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
                7                74 
[1] "3P GAIN MUTATION ANALYSIS"
[1] 3
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
                4                77 
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
                4                77 
[1] "3Q GAIN MUTATION ANALYSIS"
[1] 3
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
                9                72 
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
                9                72 
[1] "4P GAIN MUTATION ANALYSIS"
[1] 3
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
                3                78 
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
                3                78 
[1] "4Q GAIN MUTATION ANALYSIS"
[1] 3
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
                3                78 
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
                3                78 
[1] "5P GAIN MUTATION ANALYSIS"
[1] 3
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
                9                72 
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
                9                72 
[1] "5Q GAIN MUTATION ANALYSIS"
[1] 3
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
                5                76 
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
                5                76 
[1] "7P GAIN MUTATION ANALYSIS"
[1] 3
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
               19                62 
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
               19                62 
[1] "7Q GAIN MUTATION ANALYSIS"
[1] 3
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
               17                64 
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
               17                64 
[1] "8P GAIN MUTATION ANALYSIS"
[1] 3
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
               10                71 
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
               10                71 
[1] "8Q GAIN MUTATION ANALYSIS"
[1] 3
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
               21                60 
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
               21                60 
[1] "9P GAIN MUTATION ANALYSIS"
[1] 3
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
                3                78 
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
                3                78 
[1] "9Q GAIN MUTATION ANALYSIS"
[1] 3
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
                4                77 
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
                4                77 
[1] "10Q GAIN MUTATION ANALYSIS"
[1] 3
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                 4                 77 
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                 4                 77 
[1] "11P GAIN MUTATION ANALYSIS"
[1] 3
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                 7                 74 
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                 7                 74 
[1] "11Q GAIN MUTATION ANALYSIS"
[1] 3
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                 7                 74 
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                 7                 74 
[1] "12P GAIN MUTATION ANALYSIS"
[1] 3
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
                 8                 73 
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
                 8                 73 
[1] "12Q GAIN MUTATION ANALYSIS"
[1] 3
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
                 6                 75 
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
                 6                 75 
[1] "13Q GAIN MUTATION ANALYSIS"
[1] 3
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                 6                 75 
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                 6                 75 
[1] "14Q GAIN MUTATION ANALYSIS"
[1] 3
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
                 9                 72 
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
                 9                 72 
[1] "15Q GAIN MUTATION ANALYSIS"
[1] 3
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                 6                 75 
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                 6                 75 
[1] "16P GAIN MUTATION ANALYSIS"
[1] 3
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
                 8                 73 
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
                 8                 73 
[1] "16Q GAIN MUTATION ANALYSIS"
[1] 3
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                 9                 72 
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                 9                 72 
[1] "17Q GAIN MUTATION ANALYSIS"
[1] 3
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
                 4                 77 
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
                 4                 77 
[1] "18P GAIN MUTATION ANALYSIS"
[1] 3
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                10                 71 
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                10                 71 
[1] "18Q GAIN MUTATION ANALYSIS"
[1] 3
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                 3                 78 
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                 3                 78 
[1] "19P GAIN MUTATION ANALYSIS"
[1] 3
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                 4                 77 
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                 4                 77 
[1] "19Q GAIN MUTATION ANALYSIS"
[1] 3
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
                 9                 72 
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
                 9                 72 
[1] "20P GAIN MUTATION ANALYSIS"
[1] 3
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
                13                 68 
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
                13                 68 
[1] "20Q GAIN MUTATION ANALYSIS"
[1] 3
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
                17                 64 
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
                17                 64 
[1] "22Q GAIN MUTATION ANALYSIS"
[1] 3
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                 4                 77 
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                 4                 77 
[1] "XQ GAIN MUTATION ANALYSIS"
[1] 3
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
                3                78 
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
                3                78 
[1] "1P LOSS MUTATION ANALYSIS"
[1] 3
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
               11                70 
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
               11                70 
[1] "1Q LOSS MUTATION ANALYSIS"
[1] 3
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
                3                78 
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
                3                78 
[1] "2P LOSS MUTATION ANALYSIS"
[1] 3
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
                6                75 
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
                6                75 
[1] "3P LOSS MUTATION ANALYSIS"
[1] 3
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
               12                69 
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
               12                69 
[1] "3Q LOSS MUTATION ANALYSIS"
[1] 3
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
                6                75 
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
                6                75 
[1] "4P LOSS MUTATION ANALYSIS"
[1] 3
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
                9                72 
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
                9                72 
[1] "4Q LOSS MUTATION ANALYSIS"
[1] 3
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
                8                73 
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
                8                73 
[1] "5P LOSS MUTATION ANALYSIS"
[1] 3
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
                3                78 
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
                3                78 
[1] "5Q LOSS MUTATION ANALYSIS"
[1] 3
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
                7                74 
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
                7                74 
[1] "6P LOSS MUTATION ANALYSIS"
[1] 3
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
               28                53 
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
               28                53 
[1] "6Q LOSS MUTATION ANALYSIS"
[1] 3
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
               34                47 
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
               34                47 
[1] "8P LOSS MUTATION ANALYSIS"
[1] 3
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
               11                70 
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
               11                70 
[1] "9P LOSS MUTATION ANALYSIS"
[1] 3
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
               34                47 
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
               34                47 
[1] "9Q LOSS MUTATION ANALYSIS"
[1] 3
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
               20                61 
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
               20                61 
[1] "10P LOSS MUTATION ANALYSIS"
[1] 3
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
                13                 68 
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
                13                 68 
[1] "10Q LOSS MUTATION ANALYSIS"
[1] 3
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
                12                 69 
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
                12                 69 
[1] "11P LOSS MUTATION ANALYSIS"
[1] 3
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
                 6                 75 
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
                 6                 75 
[1] "11Q LOSS MUTATION ANALYSIS"
[1] 3
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
                 6                 75 
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
                 6                 75 
[1] "12P LOSS MUTATION ANALYSIS"
[1] 3
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
                 8                 73 
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
                 8                 73 
[1] "12Q LOSS MUTATION ANALYSIS"
[1] 3
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                10                 71 
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                10                 71 
[1] "13Q LOSS MUTATION ANALYSIS"
[1] 3
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
                10                 71 
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
                10                 71 
[1] "14Q LOSS MUTATION ANALYSIS"
[1] 3
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
                 4                 77 
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
                 4                 77 
[1] "15Q LOSS MUTATION ANALYSIS"
[1] 3
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
                11                 70 
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
                11                 70 
[1] "17P LOSS MUTATION ANALYSIS"
[1] 3
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
                33                 48 
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
                33                 48 
[1] "17Q LOSS MUTATION ANALYSIS"
[1] 3
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
                11                 70 
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
                11                 70 
[1] "18P LOSS MUTATION ANALYSIS"
[1] 3
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
                29                 52 
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
                29                 52 
[1] "18Q LOSS MUTATION ANALYSIS"
[1] 3
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
                44                 37 
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
                44                 37 
[1] "19P LOSS MUTATION ANALYSIS"
[1] 3
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
                 7                 74 
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
                 7                 74 
[1] "19Q LOSS MUTATION ANALYSIS"
[1] 3
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                 5                 76 
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                 5                 76 
[1] "20P LOSS MUTATION ANALYSIS"
[1] 3
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                 7                 74 
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                 7                 74 
[1] "21Q LOSS MUTATION ANALYSIS"
[1] 3
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
                28                 53 
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
                28                 53 
[1] "22Q LOSS MUTATION ANALYSIS"
[1] 3
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
                16                 65 
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
                16                 65 
[1] "XQ LOSS MUTATION ANALYSIS"
[1] 3
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
                5                76 
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
                5                76 
[1] "terrence_modification_tag"
[1] TRUE
[1] "data2feature, selection="
[1] "CN_CNMF"                     "METHLYATION_CNMF"           
[3] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
[5] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[7] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 8 rows and 81 columns.

Variable 1:'CN_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'METHLYATION_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'MRNASEQ_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'MIRSEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MIRSEQ_MATURE_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "rownames(nsurv.mat)"
[1] "CN_CNMF"                     "METHLYATION_CNMF"           
[3] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
[5] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[7] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 81 columns, 0 survival variables, and 8 non-survival variables.
CN_CNMF, nv=3, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=4, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE

Clustering(1) Variable = 1P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P GAIN MUTATED        2      3      1
  1P GAIN WILD-TYPE     18     39     18
D1V1, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1               2                18
  CLUS_2               3                39
  CLUS_3               1                18
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P GAIN MUTATED        2      2      2
  1P GAIN WILD-TYPE     25     32     17
D1V2, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1               2                25
  CLUS_2               2                32
  CLUS_3               2                17
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1P GAIN MUTATED        3      1      1      0
  1P GAIN WILD-TYPE     18     11     11     10
D1V3, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1               3                18
  CLUS_2               1                11
  CLUS_3               1                11
  CLUS_4               0                10
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P GAIN MUTATED        0      3      2
  1P GAIN WILD-TYPE      5     19     26
D1V4, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1               0                 5
  CLUS_2               3                19
  CLUS_3               2                26
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P GAIN MUTATED        3      1      1
  1P GAIN WILD-TYPE     26     10     17
D1V5, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1               3                26
  CLUS_2               1                10
  CLUS_3               1                17
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P GAIN MUTATED        1      1      3
  1P GAIN WILD-TYPE     10     19     24
D1V6, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1               1                10
  CLUS_2               1                19
  CLUS_3               3                24
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P GAIN MUTATED        3      0      2
  1P GAIN WILD-TYPE     22     10     21
D1V7, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1               3                22
  CLUS_2               0                10
  CLUS_3               2                21
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P GAIN MUTATED        1      3      1
  1P GAIN WILD-TYPE     11     23     19
D1V8, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1               1                11
  CLUS_2               3                23
  CLUS_3               1                19

Clustering(2) Variable = 1Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q GAIN MUTATED        7      7      5
  1Q GAIN WILD-TYPE     13     35     14
D2V1, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1               7                13
  CLUS_2               7                35
  CLUS_3               5                14
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q GAIN MUTATED        8      4      7
  1Q GAIN WILD-TYPE     19     30     12
D2V2, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1               8                19
  CLUS_2               4                30
  CLUS_3               7                12
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1Q GAIN MUTATED        9      4      2      0
  1Q GAIN WILD-TYPE     12      8     10     10
D2V3, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1               9                12
  CLUS_2               4                 8
  CLUS_3               2                10
  CLUS_4               0                10
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q GAIN MUTATED        0      9      6
  1Q GAIN WILD-TYPE      5     13     22
D2V4, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1               0                 5
  CLUS_2               9                13
  CLUS_3               6                22
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q GAIN MUTATED        9      4      2
  1Q GAIN WILD-TYPE     20      7     16
D2V5, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1               9                20
  CLUS_2               4                 7
  CLUS_3               2                16
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q GAIN MUTATED        2      5      8
  1Q GAIN WILD-TYPE      9     15     19
D2V6, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1               2                 9
  CLUS_2               5                15
  CLUS_3               8                19
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q GAIN MUTATED        8      2      5
  1Q GAIN WILD-TYPE     17      8     18
D2V7, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1               8                17
  CLUS_2               2                 8
  CLUS_3               5                18
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q GAIN MUTATED        2      8      5
  1Q GAIN WILD-TYPE     10     18     15
D2V8, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1               2                10
  CLUS_2               8                18
  CLUS_3               5                15

Clustering(3) Variable = 2P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P GAIN MUTATED        1      1      4
  2P GAIN WILD-TYPE     19     41     15
D3V1, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1               1                19
  CLUS_2               1                41
  CLUS_3               4                15
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P GAIN MUTATED        3      0      3
  2P GAIN WILD-TYPE     24     34     16
D3V2, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1               3                24
  CLUS_2               0                34
  CLUS_3               3                16
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2P GAIN MUTATED        5      0      0      0
  2P GAIN WILD-TYPE     16     12     12     10
D3V3, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1               5                16
  CLUS_2               0                12
  CLUS_3               0                12
  CLUS_4               0                10
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P GAIN MUTATED        0      5      0
  2P GAIN WILD-TYPE      5     17     28
D3V4, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1               0                 5
  CLUS_2               5                17
  CLUS_3               0                28
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P GAIN MUTATED        5      0      0
  2P GAIN WILD-TYPE     24     11     18
D3V5, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1               5                24
  CLUS_2               0                11
  CLUS_3               0                18
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P GAIN MUTATED        0      1      4
  2P GAIN WILD-TYPE     11     19     23
D3V6, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1               0                11
  CLUS_2               1                19
  CLUS_3               4                23
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P GAIN MUTATED        4      1      0
  2P GAIN WILD-TYPE     21      9     23
D3V7, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1               4                21
  CLUS_2               1                 9
  CLUS_3               0                23
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P GAIN MUTATED        0      4      1
  2P GAIN WILD-TYPE     12     22     19
D3V8, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1               0                12
  CLUS_2               4                22
  CLUS_3               1                19

Clustering(4) Variable = 2Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2Q GAIN MUTATED        1      1      5
  2Q GAIN WILD-TYPE     19     41     14
D4V1, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1               1                19
  CLUS_2               1                41
  CLUS_3               5                14
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2Q GAIN MUTATED        3      0      4
  2Q GAIN WILD-TYPE     24     34     15
D4V2, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1               3                24
  CLUS_2               0                34
  CLUS_3               4                15
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2Q GAIN MUTATED        6      0      0      0
  2Q GAIN WILD-TYPE     15     12     12     10
D4V3, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1               6                15
  CLUS_2               0                12
  CLUS_3               0                12
  CLUS_4               0                10
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2Q GAIN MUTATED        0      6      0
  2Q GAIN WILD-TYPE      5     16     28
D4V4, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1               0                 5
  CLUS_2               6                16
  CLUS_3               0                28
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2Q GAIN MUTATED        6      0      0
  2Q GAIN WILD-TYPE     23     11     18
D4V5, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1               6                23
  CLUS_2               0                11
  CLUS_3               0                18
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2Q GAIN MUTATED        0      1      5
  2Q GAIN WILD-TYPE     11     19     22
D4V6, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1               0                11
  CLUS_2               1                19
  CLUS_3               5                22
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2Q GAIN MUTATED        5      1      0
  2Q GAIN WILD-TYPE     20      9     23
D4V7, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1               5                20
  CLUS_2               1                 9
  CLUS_3               0                23
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2Q GAIN MUTATED        0      5      1
  2Q GAIN WILD-TYPE     12     21     19
D4V8, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1               0                12
  CLUS_2               5                21
  CLUS_3               1                19

Clustering(5) Variable = 3P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P GAIN MUTATED        1      1      2
  3P GAIN WILD-TYPE     19     41     17
D5V1, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1               1                19
  CLUS_2               1                41
  CLUS_3               2                17
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P GAIN MUTATED        2      0      2
  3P GAIN WILD-TYPE     25     34     17
D5V2, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1               2                25
  CLUS_2               0                34
  CLUS_3               2                17
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3P GAIN MUTATED        3      0      0      0
  3P GAIN WILD-TYPE     18     12     12     10
D5V3, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1               3                18
  CLUS_2               0                12
  CLUS_3               0                12
  CLUS_4               0                10
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P GAIN MUTATED        0      3      0
  3P GAIN WILD-TYPE      5     19     28
D5V4, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1               0                 5
  CLUS_2               3                19
  CLUS_3               0                28
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P GAIN MUTATED        3      0      0
  3P GAIN WILD-TYPE     26     11     18
D5V5, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1               3                26
  CLUS_2               0                11
  CLUS_3               0                18
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P GAIN MUTATED        0      1      2
  3P GAIN WILD-TYPE     11     19     25
D5V6, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1               0                11
  CLUS_2               1                19
  CLUS_3               2                25
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P GAIN MUTATED        2      1      0
  3P GAIN WILD-TYPE     23      9     23
D5V7, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1               2                23
  CLUS_2               1                 9
  CLUS_3               0                23
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P GAIN MUTATED        0      2      1
  3P GAIN WILD-TYPE     12     24     19
D5V8, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1               0                12
  CLUS_2               2                24
  CLUS_3               1                19

Clustering(6) Variable = 3Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q GAIN MUTATED        3      2      4
  3Q GAIN WILD-TYPE     17     40     15
D6V1, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1               3                17
  CLUS_2               2                40
  CLUS_3               4                15
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q GAIN MUTATED        4      0      5
  3Q GAIN WILD-TYPE     23     34     14
D6V2, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1               4                23
  CLUS_2               0                34
  CLUS_3               5                14
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3Q GAIN MUTATED        6      0      1      0
  3Q GAIN WILD-TYPE     15     12     11     10
D6V3, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1               6                15
  CLUS_2               0                12
  CLUS_3               1                11
  CLUS_4               0                10
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q GAIN MUTATED        0      6      1
  3Q GAIN WILD-TYPE      5     16     27
D6V4, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1               0                 5
  CLUS_2               6                16
  CLUS_3               1                27
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q GAIN MUTATED        7      0      1
  3Q GAIN WILD-TYPE     22     11     17
D6V5, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1               7                22
  CLUS_2               0                11
  CLUS_3               1                17
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q GAIN MUTATED        1      1      6
  3Q GAIN WILD-TYPE     10     19     21
D6V6, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1               1                10
  CLUS_2               1                19
  CLUS_3               6                21
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q GAIN MUTATED        6      1      1
  3Q GAIN WILD-TYPE     19      9     22
D6V7, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1               6                19
  CLUS_2               1                 9
  CLUS_3               1                22
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q GAIN MUTATED        1      6      1
  3Q GAIN WILD-TYPE     11     20     19
D6V8, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1               1                11
  CLUS_2               6                20
  CLUS_3               1                19

Clustering(7) Variable = 4P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P GAIN MUTATED        1      1      1
  4P GAIN WILD-TYPE     19     41     18
D7V1, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1               1                19
  CLUS_2               1                41
  CLUS_3               1                18
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P GAIN MUTATED        2      1      0
  4P GAIN WILD-TYPE     25     33     19
D7V2, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1               2                25
  CLUS_2               1                33
  CLUS_3               0                19
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4P GAIN MUTATED        2      0      1      0
  4P GAIN WILD-TYPE     19     12     11     10
D7V3, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1               2                19
  CLUS_2               0                12
  CLUS_3               1                11
  CLUS_4               0                10
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P GAIN MUTATED        0      2      1
  4P GAIN WILD-TYPE      5     20     27
D7V4, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1               0                 5
  CLUS_2               2                20
  CLUS_3               1                27
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P GAIN MUTATED        2      0      1
  4P GAIN WILD-TYPE     27     11     17
D7V5, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1               2                27
  CLUS_2               0                11
  CLUS_3               1                17
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P GAIN MUTATED        1      1      1
  4P GAIN WILD-TYPE     10     19     26
D7V6, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1               1                10
  CLUS_2               1                19
  CLUS_3               1                26
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P GAIN MUTATED        1      1      1
  4P GAIN WILD-TYPE     24      9     22
D7V7, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1               1                24
  CLUS_2               1                 9
  CLUS_3               1                22
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P GAIN MUTATED        1      1      1
  4P GAIN WILD-TYPE     11     25     19
D7V8, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1               1                11
  CLUS_2               1                25
  CLUS_3               1                19

Clustering(8) Variable = 4Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q GAIN MUTATED        1      1      1
  4Q GAIN WILD-TYPE     19     41     18
D8V1, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1               1                19
  CLUS_2               1                41
  CLUS_3               1                18
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q GAIN MUTATED        2      1      0
  4Q GAIN WILD-TYPE     25     33     19
D8V2, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1               2                25
  CLUS_2               1                33
  CLUS_3               0                19
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4Q GAIN MUTATED        2      0      1      0
  4Q GAIN WILD-TYPE     19     12     11     10
D8V3, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1               2                19
  CLUS_2               0                12
  CLUS_3               1                11
  CLUS_4               0                10
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q GAIN MUTATED        0      2      1
  4Q GAIN WILD-TYPE      5     20     27
D8V4, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1               0                 5
  CLUS_2               2                20
  CLUS_3               1                27
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q GAIN MUTATED        2      0      1
  4Q GAIN WILD-TYPE     27     11     17
D8V5, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1               2                27
  CLUS_2               0                11
  CLUS_3               1                17
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q GAIN MUTATED        1      1      1
  4Q GAIN WILD-TYPE     10     19     26
D8V6, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1               1                10
  CLUS_2               1                19
  CLUS_3               1                26
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q GAIN MUTATED        1      1      1
  4Q GAIN WILD-TYPE     24      9     22
D8V7, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1               1                24
  CLUS_2               1                 9
  CLUS_3               1                22
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q GAIN MUTATED        1      1      1
  4Q GAIN WILD-TYPE     11     25     19
D8V8, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1               1                11
  CLUS_2               1                25
  CLUS_3               1                19

Clustering(9) Variable = 5P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P GAIN MUTATED        1      3      5
  5P GAIN WILD-TYPE     19     39     14
D9V1, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1               1                19
  CLUS_2               3                39
  CLUS_3               5                14
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P GAIN MUTATED        5      1      3
  5P GAIN WILD-TYPE     22     33     16
D9V2, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1               5                22
  CLUS_2               1                33
  CLUS_3               3                16
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5P GAIN MUTATED        4      0      1      0
  5P GAIN WILD-TYPE     17     12     11     10
D9V3, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1               4                17
  CLUS_2               0                12
  CLUS_3               1                11
  CLUS_4               0                10
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P GAIN MUTATED        0      4      1
  5P GAIN WILD-TYPE      5     18     27
D9V4, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1               0                 5
  CLUS_2               4                18
  CLUS_3               1                27
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P GAIN MUTATED        5      0      1
  5P GAIN WILD-TYPE     24     11     17
D9V5, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1               5                24
  CLUS_2               0                11
  CLUS_3               1                17
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P GAIN MUTATED        1      1      4
  5P GAIN WILD-TYPE     10     19     23
D9V6, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1               1                10
  CLUS_2               1                19
  CLUS_3               4                23
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P GAIN MUTATED        4      1      1
  5P GAIN WILD-TYPE     21      9     22
D9V7, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1               4                21
  CLUS_2               1                 9
  CLUS_3               1                22
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P GAIN MUTATED        1      4      1
  5P GAIN WILD-TYPE     11     22     19
D9V8, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1               1                11
  CLUS_2               4                22
  CLUS_3               1                19

Clustering(10) Variable = 5Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q GAIN MUTATED        1      2      2
  5Q GAIN WILD-TYPE     19     40     17
D10V1, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1               1                19
  CLUS_2               2                40
  CLUS_3               2                17
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q GAIN MUTATED        3      1      1
  5Q GAIN WILD-TYPE     24     33     18
D10V2, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1               3                24
  CLUS_2               1                33
  CLUS_3               1                18
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5Q GAIN MUTATED        3      0      1      0
  5Q GAIN WILD-TYPE     18     12     11     10
D10V3, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1               3                18
  CLUS_2               0                12
  CLUS_3               1                11
  CLUS_4               0                10
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q GAIN MUTATED        0      3      1
  5Q GAIN WILD-TYPE      5     19     27
D10V4, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1               0                 5
  CLUS_2               3                19
  CLUS_3               1                27
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q GAIN MUTATED        3      0      1
  5Q GAIN WILD-TYPE     26     11     17
D10V5, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1               3                26
  CLUS_2               0                11
  CLUS_3               1                17
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q GAIN MUTATED        1      0      3
  5Q GAIN WILD-TYPE     10     20     24
D10V6, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1               1                10
  CLUS_2               0                20
  CLUS_3               3                24
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q GAIN MUTATED        3      0      1
  5Q GAIN WILD-TYPE     22     10     22
D10V7, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1               3                22
  CLUS_2               0                10
  CLUS_3               1                22
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q GAIN MUTATED        1      3      0
  5Q GAIN WILD-TYPE     11     23     20
D10V8, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1               1                11
  CLUS_2               3                23
  CLUS_3               0                20

Clustering(11) Variable = 7P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7P GAIN MUTATED        5      6      8
  7P GAIN WILD-TYPE     15     36     11
D11V1, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1               5                15
  CLUS_2               6                36
  CLUS_3               8                11
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7P GAIN MUTATED        9      2      7
  7P GAIN WILD-TYPE     18     32     12
D11V2, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1               9                18
  CLUS_2               2                32
  CLUS_3               7                12
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7P GAIN MUTATED        8      2      0      2
  7P GAIN WILD-TYPE     13     10     12      8
D11V3, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1               8                13
  CLUS_2               2                10
  CLUS_3               0                12
  CLUS_4               2                 8
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7P GAIN MUTATED        1      8      3
  7P GAIN WILD-TYPE      4     14     25
D11V4, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1               1                 4
  CLUS_2               8                14
  CLUS_3               3                25
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7P GAIN MUTATED       11      2      1
  7P GAIN WILD-TYPE     18      9     17
D11V5, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1              11                18
  CLUS_2               2                 9
  CLUS_3               1                17
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7P GAIN MUTATED        1      3     10
  7P GAIN WILD-TYPE     10     17     17
D11V6, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1               1                10
  CLUS_2               3                17
  CLUS_3              10                17
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7P GAIN MUTATED       10      2      2
  7P GAIN WILD-TYPE     15      8     21
D11V7, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1              10                15
  CLUS_2               2                 8
  CLUS_3               2                21
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7P GAIN MUTATED        1     10      3
  7P GAIN WILD-TYPE     11     16     17
D11V8, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1               1                11
  CLUS_2              10                16
  CLUS_3               3                17

Clustering(12) Variable = 7Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q GAIN MUTATED        4      6      7
  7Q GAIN WILD-TYPE     16     36     12
D12V1, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1               4                16
  CLUS_2               6                36
  CLUS_3               7                12
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q GAIN MUTATED        7      2      7
  7Q GAIN WILD-TYPE     20     32     12
D12V2, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1               7                20
  CLUS_2               2                32
  CLUS_3               7                12
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7Q GAIN MUTATED        8      2      0      2
  7Q GAIN WILD-TYPE     13     10     12      8
D12V3, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1               8                13
  CLUS_2               2                10
  CLUS_3               0                12
  CLUS_4               2                 8
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q GAIN MUTATED        1      8      3
  7Q GAIN WILD-TYPE      4     14     25
D12V4, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1               1                 4
  CLUS_2               8                14
  CLUS_3               3                25
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q GAIN MUTATED       11      2      1
  7Q GAIN WILD-TYPE     18      9     17
D12V5, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1              11                18
  CLUS_2               2                 9
  CLUS_3               1                17
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q GAIN MUTATED        1      3     10
  7Q GAIN WILD-TYPE     10     17     17
D12V6, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1               1                10
  CLUS_2               3                17
  CLUS_3              10                17
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q GAIN MUTATED       10      2      2
  7Q GAIN WILD-TYPE     15      8     21
D12V7, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1              10                15
  CLUS_2               2                 8
  CLUS_3               2                21
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q GAIN MUTATED        1     10      3
  7Q GAIN WILD-TYPE     11     16     17
D12V8, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1               1                11
  CLUS_2              10                16
  CLUS_3               3                17

Clustering(13) Variable = 8P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P GAIN MUTATED        2      3      5
  8P GAIN WILD-TYPE     18     39     14
D13V1, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1               2                18
  CLUS_2               3                39
  CLUS_3               5                14
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P GAIN MUTATED        6      1      2
  8P GAIN WILD-TYPE     21     33     17
D13V2, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1               6                21
  CLUS_2               1                33
  CLUS_3               2                17
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8P GAIN MUTATED        7      0      1      0
  8P GAIN WILD-TYPE     14     12     11     10
D13V3, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1               7                14
  CLUS_2               0                12
  CLUS_3               1                11
  CLUS_4               0                10
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P GAIN MUTATED        0      7      1
  8P GAIN WILD-TYPE      5     15     27
D13V4, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1               0                 5
  CLUS_2               7                15
  CLUS_3               1                27
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P GAIN MUTATED        7      0      1
  8P GAIN WILD-TYPE     22     11     17
D13V5, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1               7                22
  CLUS_2               0                11
  CLUS_3               1                17
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P GAIN MUTATED        1      1      6
  8P GAIN WILD-TYPE     10     19     21
D13V6, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1               1                10
  CLUS_2               1                19
  CLUS_3               6                21
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P GAIN MUTATED        6      1      1
  8P GAIN WILD-TYPE     19      9     22
D13V7, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1               6                19
  CLUS_2               1                 9
  CLUS_3               1                22
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P GAIN MUTATED        1      6      1
  8P GAIN WILD-TYPE     11     20     19
D13V8, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1               1                11
  CLUS_2               6                20
  CLUS_3               1                19

Clustering(14) Variable = 8Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q GAIN MUTATED        7      5      9
  8Q GAIN WILD-TYPE     13     37     10
D14V1, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1               7                13
  CLUS_2               5                37
  CLUS_3               9                10
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q GAIN MUTATED       12      2      6
  8Q GAIN WILD-TYPE     15     32     13
D14V2, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1              12                15
  CLUS_2               2                32
  CLUS_3               6                13
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8Q GAIN MUTATED       13      0      2      0
  8Q GAIN WILD-TYPE      8     12     10     10
D14V3, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1              13                 8
  CLUS_2               0                12
  CLUS_3               2                10
  CLUS_4               0                10
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q GAIN MUTATED        0     13      2
  8Q GAIN WILD-TYPE      5      9     26
D14V4, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1               0                 5
  CLUS_2              13                 9
  CLUS_3               2                26
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q GAIN MUTATED       14      0      2
  8Q GAIN WILD-TYPE     15     11     16
D14V5, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1              14                15
  CLUS_2               0                11
  CLUS_3               2                16
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q GAIN MUTATED        2      1     13
  8Q GAIN WILD-TYPE      9     19     14
D14V6, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1               2                 9
  CLUS_2               1                19
  CLUS_3              13                14
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q GAIN MUTATED       13      1      2
  8Q GAIN WILD-TYPE     12      9     21
D14V7, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1              13                12
  CLUS_2               1                 9
  CLUS_3               2                21
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q GAIN MUTATED        2     13      1
  8Q GAIN WILD-TYPE     10     13     19
D14V8, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1               2                10
  CLUS_2              13                13
  CLUS_3               1                19

Clustering(15) Variable = 9P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P GAIN MUTATED        1      1      1
  9P GAIN WILD-TYPE     19     41     18
D15V1, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1               1                19
  CLUS_2               1                41
  CLUS_3               1                18
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P GAIN MUTATED        2      0      1
  9P GAIN WILD-TYPE     25     34     18
D15V2, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1               2                25
  CLUS_2               0                34
  CLUS_3               1                18
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9P GAIN MUTATED        3      0      0      0
  9P GAIN WILD-TYPE     18     12     12     10
D15V3, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1               3                18
  CLUS_2               0                12
  CLUS_3               0                12
  CLUS_4               0                10
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P GAIN MUTATED        0      3      0
  9P GAIN WILD-TYPE      5     19     28
D15V4, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1               0                 5
  CLUS_2               3                19
  CLUS_3               0                28
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P GAIN MUTATED        3      0      0
  9P GAIN WILD-TYPE     26     11     18
D15V5, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1               3                26
  CLUS_2               0                11
  CLUS_3               0                18
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P GAIN MUTATED        0      0      3
  9P GAIN WILD-TYPE     11     20     24
D15V6, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1               0                11
  CLUS_2               0                20
  CLUS_3               3                24
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P GAIN MUTATED        3      0      0
  9P GAIN WILD-TYPE     22     10     23
D15V7, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1               3                22
  CLUS_2               0                10
  CLUS_3               0                23
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P GAIN MUTATED        0      3      0
  9P GAIN WILD-TYPE     12     23     20
D15V8, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1               0                12
  CLUS_2               3                23
  CLUS_3               0                20

Clustering(16) Variable = 9Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q GAIN MUTATED        1      1      2
  9Q GAIN WILD-TYPE     19     41     17
D16V1, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1               1                19
  CLUS_2               1                41
  CLUS_3               2                17
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q GAIN MUTATED        3      0      1
  9Q GAIN WILD-TYPE     24     34     18
D16V2, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1               3                24
  CLUS_2               0                34
  CLUS_3               1                18
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9Q GAIN MUTATED        3      0      0      0
  9Q GAIN WILD-TYPE     18     12     12     10
D16V3, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1               3                18
  CLUS_2               0                12
  CLUS_3               0                12
  CLUS_4               0                10
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q GAIN MUTATED        0      3      0
  9Q GAIN WILD-TYPE      5     19     28
D16V4, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1               0                 5
  CLUS_2               3                19
  CLUS_3               0                28
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q GAIN MUTATED        3      0      0
  9Q GAIN WILD-TYPE     26     11     18
D16V5, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1               3                26
  CLUS_2               0                11
  CLUS_3               0                18
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q GAIN MUTATED        0      0      3
  9Q GAIN WILD-TYPE     11     20     24
D16V6, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1               0                11
  CLUS_2               0                20
  CLUS_3               3                24
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q GAIN MUTATED        3      0      0
  9Q GAIN WILD-TYPE     22     10     23
D16V7, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1               3                22
  CLUS_2               0                10
  CLUS_3               0                23
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q GAIN MUTATED        0      3      0
  9Q GAIN WILD-TYPE     12     23     20
D16V8, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1               0                12
  CLUS_2               3                23
  CLUS_3               0                20

Clustering(17) Variable = 10Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q GAIN MUTATED        1      0      3
  10Q GAIN WILD-TYPE     19     42     16
D17V1, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1                1                 19
  CLUS_2                0                 42
  CLUS_3                3                 16
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q GAIN MUTATED        1      0      3
  10Q GAIN WILD-TYPE     26     34     16
D17V2, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1                1                 26
  CLUS_2                0                 34
  CLUS_3                3                 16
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10Q GAIN MUTATED        1      0      0      0
  10Q GAIN WILD-TYPE     20     12     12     10
D17V3, multiclass
[1] "Remove cluster labels:" "10Q GAIN MUTATED"      
clus
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                 1                 54 
        TCGA-F2-6879         TCGA-F2-7273         TCGA-F2-7276 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-F2-A44G         TCGA-F2-A44H         TCGA-FB-A4P5 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-FB-A545         TCGA-H6-8124         TCGA-H6-A45N 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-HV-A5A3         TCGA-HV-A5A4         TCGA-HV-A5A5 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-HV-A5A6         TCGA-HZ-7918         TCGA-HZ-7919 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-HZ-7920         TCGA-HZ-7922         TCGA-HZ-7923 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-HZ-7924         TCGA-HZ-7925         TCGA-HZ-7926 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-HZ-8001         TCGA-HZ-8002         TCGA-HZ-8003 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-HZ-8315         TCGA-HZ-8317         TCGA-HZ-8519 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-HZ-8636         TCGA-HZ-8637         TCGA-HZ-8638 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-HZ-A49G         TCGA-HZ-A49H         TCGA-HZ-A49I 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-HZ-A4BH         TCGA-HZ-A4BK         TCGA-IB-7644 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-IB-7645         TCGA-IB-7646         TCGA-IB-7647 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-IB-7649         TCGA-IB-7651         TCGA-IB-7652 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-IB-7654         TCGA-IB-7885         TCGA-IB-7887 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-IB-7888         TCGA-IB-7889         TCGA-IB-7890 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-IB-7891         TCGA-IB-7893         TCGA-IB-7897 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-IB-8126         TCGA-IB-8127         TCGA-M8-A5N4 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q GAIN MUTATED        0      1      0
  10Q GAIN WILD-TYPE      5     21     28
D17V4, multiclass
[1] "Remove cluster labels:" "10Q GAIN MUTATED"      
clus
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                 1                 54 
        TCGA-F2-6879         TCGA-F2-7273         TCGA-F2-7276 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-F2-A44G         TCGA-F2-A44H         TCGA-FB-A4P5 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-FB-A545         TCGA-H6-8124         TCGA-H6-A45N 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-HV-A5A3         TCGA-HV-A5A4         TCGA-HV-A5A5 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-HV-A5A6         TCGA-HZ-7918         TCGA-HZ-7919 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-HZ-7920         TCGA-HZ-7922         TCGA-HZ-7923 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-HZ-7924         TCGA-HZ-7925         TCGA-HZ-7926 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-HZ-8001         TCGA-HZ-8002         TCGA-HZ-8003 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-HZ-8315         TCGA-HZ-8317         TCGA-HZ-8519 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-HZ-8636         TCGA-HZ-8637         TCGA-HZ-8638 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-HZ-A49G         TCGA-HZ-A49H         TCGA-HZ-A49I 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-HZ-A4BH         TCGA-HZ-A4BK         TCGA-IB-7644 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-IB-7645         TCGA-IB-7646         TCGA-IB-7647 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-IB-7649         TCGA-IB-7651         TCGA-IB-7652 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-IB-7654         TCGA-IB-7885         TCGA-IB-7887 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-IB-7888         TCGA-IB-7889         TCGA-IB-7890 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-IB-7891         TCGA-IB-7893         TCGA-IB-7897 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-IB-8126         TCGA-IB-8127         TCGA-M8-A5N4 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q GAIN MUTATED        1      0      0
  10Q GAIN WILD-TYPE     28     11     18
D17V5, multiclass
[1] "Remove cluster labels:" "10Q GAIN MUTATED"      
clus
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                 1                 57 
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A545         TCGA-H6-8124 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-H6-A45N         TCGA-HV-A5A3         TCGA-HV-A5A4 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-HV-A5A5         TCGA-HV-A5A6         TCGA-HZ-7289 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-HZ-7918         TCGA-HZ-7919         TCGA-HZ-7920 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-HZ-7922         TCGA-HZ-7923         TCGA-HZ-7924 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-HZ-7925         TCGA-HZ-7926         TCGA-HZ-8001 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-HZ-8002         TCGA-HZ-8003         TCGA-HZ-8005 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-HZ-8315         TCGA-HZ-8317         TCGA-HZ-8519 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-HZ-8636         TCGA-HZ-8637         TCGA-HZ-8638 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-HZ-A49G         TCGA-HZ-A49H         TCGA-HZ-A49I 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-HZ-A4BH         TCGA-HZ-A4BK         TCGA-IB-7644 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-IB-7645         TCGA-IB-7646         TCGA-IB-7647 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-IB-7649         TCGA-IB-7651         TCGA-IB-7652 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-IB-7654         TCGA-IB-7885         TCGA-IB-7887 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-IB-7888         TCGA-IB-7889         TCGA-IB-7890 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-IB-7891         TCGA-IB-7893         TCGA-IB-7897 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-IB-8126         TCGA-IB-8127         TCGA-M8-A5N4 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q GAIN MUTATED        0      0      1
  10Q GAIN WILD-TYPE     11     20     26
D17V6, multiclass
[1] "Remove cluster labels:" "10Q GAIN MUTATED"      
clus
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                 1                 57 
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A545         TCGA-H6-8124 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-H6-A45N         TCGA-HV-A5A3         TCGA-HV-A5A4 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-HV-A5A5         TCGA-HV-A5A6         TCGA-HZ-7289 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-HZ-7918         TCGA-HZ-7919         TCGA-HZ-7920 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-HZ-7922         TCGA-HZ-7923         TCGA-HZ-7924 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-HZ-7925         TCGA-HZ-7926         TCGA-HZ-8001 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-HZ-8002         TCGA-HZ-8003         TCGA-HZ-8005 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-HZ-8315         TCGA-HZ-8317         TCGA-HZ-8519 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-HZ-8636         TCGA-HZ-8637         TCGA-HZ-8638 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-HZ-A49G         TCGA-HZ-A49H         TCGA-HZ-A49I 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-HZ-A4BH         TCGA-HZ-A4BK         TCGA-IB-7644 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-IB-7645         TCGA-IB-7646         TCGA-IB-7647 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-IB-7649         TCGA-IB-7651         TCGA-IB-7652 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-IB-7654         TCGA-IB-7885         TCGA-IB-7887 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-IB-7888         TCGA-IB-7889         TCGA-IB-7890 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-IB-7891         TCGA-IB-7893         TCGA-IB-7897 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-IB-8126         TCGA-IB-8127         TCGA-M8-A5N4 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q GAIN MUTATED        1      0      0
  10Q GAIN WILD-TYPE     24     10     23
D17V7, multiclass
[1] "Remove cluster labels:" "10Q GAIN MUTATED"      
clus
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                 1                 57 
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A545         TCGA-H6-8124 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-H6-A45N         TCGA-HV-A5A3         TCGA-HV-A5A4 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-HV-A5A5         TCGA-HV-A5A6         TCGA-HZ-7289 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-HZ-7918         TCGA-HZ-7919         TCGA-HZ-7920 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-HZ-7922         TCGA-HZ-7923         TCGA-HZ-7924 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-HZ-7925         TCGA-HZ-7926         TCGA-HZ-8001 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-HZ-8002         TCGA-HZ-8003         TCGA-HZ-8005 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-HZ-8315         TCGA-HZ-8317         TCGA-HZ-8519 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-HZ-8636         TCGA-HZ-8637         TCGA-HZ-8638 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-HZ-A49G         TCGA-HZ-A49H         TCGA-HZ-A49I 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-HZ-A4BH         TCGA-HZ-A4BK         TCGA-IB-7644 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-IB-7645         TCGA-IB-7646         TCGA-IB-7647 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-IB-7649         TCGA-IB-7651         TCGA-IB-7652 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-IB-7654         TCGA-IB-7885         TCGA-IB-7887 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-IB-7888         TCGA-IB-7889         TCGA-IB-7890 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-IB-7891         TCGA-IB-7893         TCGA-IB-7897 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-IB-8126         TCGA-IB-8127         TCGA-M8-A5N4 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q GAIN MUTATED        0      1      0
  10Q GAIN WILD-TYPE     12     25     20
D17V8, multiclass
[1] "Remove cluster labels:" "10Q GAIN MUTATED"      
clus
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                 1                 57 
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A545         TCGA-H6-8124 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-H6-A45N         TCGA-HV-A5A3         TCGA-HV-A5A4 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-HV-A5A5         TCGA-HV-A5A6         TCGA-HZ-7289 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-HZ-7918         TCGA-HZ-7919         TCGA-HZ-7920 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-HZ-7922         TCGA-HZ-7923         TCGA-HZ-7924 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-HZ-7925         TCGA-HZ-7926         TCGA-HZ-8001 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-HZ-8002         TCGA-HZ-8003         TCGA-HZ-8005 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-HZ-8315         TCGA-HZ-8317         TCGA-HZ-8519 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-HZ-8636         TCGA-HZ-8637         TCGA-HZ-8638 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-HZ-A49G         TCGA-HZ-A49H         TCGA-HZ-A49I 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-HZ-A4BH         TCGA-HZ-A4BK         TCGA-IB-7644 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-IB-7645         TCGA-IB-7646         TCGA-IB-7647 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-IB-7649         TCGA-IB-7651         TCGA-IB-7652 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-IB-7654         TCGA-IB-7885         TCGA-IB-7887 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-IB-7888         TCGA-IB-7889         TCGA-IB-7890 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-IB-7891         TCGA-IB-7893         TCGA-IB-7897 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-IB-8126         TCGA-IB-8127         TCGA-M8-A5N4 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 

Clustering(18) Variable = 11P GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P GAIN MUTATED        1      2      4
  11P GAIN WILD-TYPE     19     40     15
D18V1, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                1                 19
  CLUS_2                2                 40
  CLUS_3                4                 15
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P GAIN MUTATED        4      0      3
  11P GAIN WILD-TYPE     23     34     16
D18V2, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                4                 23
  CLUS_2                0                 34
  CLUS_3                3                 16
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11P GAIN MUTATED        4      0      2      0
  11P GAIN WILD-TYPE     17     12     10     10
D18V3, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                4                 17
  CLUS_2                0                 12
  CLUS_3                2                 10
  CLUS_4                0                 10
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P GAIN MUTATED        0      4      2
  11P GAIN WILD-TYPE      5     18     26
D18V4, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                0                  5
  CLUS_2                4                 18
  CLUS_3                2                 26
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P GAIN MUTATED        4      0      2
  11P GAIN WILD-TYPE     25     11     16
D18V5, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                4                 25
  CLUS_2                0                 11
  CLUS_3                2                 16
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P GAIN MUTATED        2      0      4
  11P GAIN WILD-TYPE      9     20     23
D18V6, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                2                  9
  CLUS_2                0                 20
  CLUS_3                4                 23
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P GAIN MUTATED        4      0      2
  11P GAIN WILD-TYPE     21     10     21
D18V7, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                4                 21
  CLUS_2                0                 10
  CLUS_3                2                 21
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P GAIN MUTATED        2      4      0
  11P GAIN WILD-TYPE     10     22     20
D18V8, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                2                 10
  CLUS_2                4                 22
  CLUS_3                0                 20

Clustering(19) Variable = 11Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q GAIN MUTATED        1      2      4
  11Q GAIN WILD-TYPE     19     40     15
D19V1, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                1                 19
  CLUS_2                2                 40
  CLUS_3                4                 15
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q GAIN MUTATED        4      1      2
  11Q GAIN WILD-TYPE     23     33     17
D19V2, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                4                 23
  CLUS_2                1                 33
  CLUS_3                2                 17
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11Q GAIN MUTATED        5      0      1      0
  11Q GAIN WILD-TYPE     16     12     11     10
D19V3, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                5                 16
  CLUS_2                0                 12
  CLUS_3                1                 11
  CLUS_4                0                 10
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q GAIN MUTATED        0      5      1
  11Q GAIN WILD-TYPE      5     17     27
D19V4, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                0                  5
  CLUS_2                5                 17
  CLUS_3                1                 27
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q GAIN MUTATED        5      0      1
  11Q GAIN WILD-TYPE     24     11     17
D19V5, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                5                 24
  CLUS_2                0                 11
  CLUS_3                1                 17
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q GAIN MUTATED        1      0      5
  11Q GAIN WILD-TYPE     10     20     22
D19V6, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                1                 10
  CLUS_2                0                 20
  CLUS_3                5                 22
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q GAIN MUTATED        5      0      1
  11Q GAIN WILD-TYPE     20     10     22
D19V7, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                5                 20
  CLUS_2                0                 10
  CLUS_3                1                 22
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q GAIN MUTATED        1      5      0
  11Q GAIN WILD-TYPE     11     21     20
D19V8, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                1                 11
  CLUS_2                5                 21
  CLUS_3                0                 20

Clustering(20) Variable = 12P GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12P GAIN MUTATED        2      0      6
  12P GAIN WILD-TYPE     18     42     13
D20V1, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1                2                 18
  CLUS_2                0                 42
  CLUS_3                6                 13
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12P GAIN MUTATED        5      0      3
  12P GAIN WILD-TYPE     22     34     16
D20V2, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1                5                 22
  CLUS_2                0                 34
  CLUS_3                3                 16
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12P GAIN MUTATED        5      0      0      0
  12P GAIN WILD-TYPE     16     12     12     10
D20V3, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1                5                 16
  CLUS_2                0                 12
  CLUS_3                0                 12
  CLUS_4                0                 10
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12P GAIN MUTATED        1      4      0
  12P GAIN WILD-TYPE      4     18     28
D20V4, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1                1                  4
  CLUS_2                4                 18
  CLUS_3                0                 28
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12P GAIN MUTATED        7      0      0
  12P GAIN WILD-TYPE     22     11     18
D20V5, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1                7                 22
  CLUS_2                0                 11
  CLUS_3                0                 18
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12P GAIN MUTATED        0      1      6
  12P GAIN WILD-TYPE     11     19     21
D20V6, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1                0                 11
  CLUS_2                1                 19
  CLUS_3                6                 21
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12P GAIN MUTATED        6      1      0
  12P GAIN WILD-TYPE     19      9     23
D20V7, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1                6                 19
  CLUS_2                1                  9
  CLUS_3                0                 23
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12P GAIN MUTATED        0      6      1
  12P GAIN WILD-TYPE     12     20     19
D20V8, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1                0                 12
  CLUS_2                6                 20
  CLUS_3                1                 19

Clustering(21) Variable = 12Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12Q GAIN MUTATED        2      0      4
  12Q GAIN WILD-TYPE     18     42     15
D21V1, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1                2                 18
  CLUS_2                0                 42
  CLUS_3                4                 15
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12Q GAIN MUTATED        4      0      2
  12Q GAIN WILD-TYPE     23     34     17
D21V2, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1                4                 23
  CLUS_2                0                 34
  CLUS_3                2                 17
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12Q GAIN MUTATED        4      0      0      0
  12Q GAIN WILD-TYPE     17     12     12     10
D21V3, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1                4                 17
  CLUS_2                0                 12
  CLUS_3                0                 12
  CLUS_4                0                 10
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12Q GAIN MUTATED        1      3      0
  12Q GAIN WILD-TYPE      4     19     28
D21V4, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1                1                  4
  CLUS_2                3                 19
  CLUS_3                0                 28
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12Q GAIN MUTATED        6      0      0
  12Q GAIN WILD-TYPE     23     11     18
D21V5, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1                6                 23
  CLUS_2                0                 11
  CLUS_3                0                 18
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12Q GAIN MUTATED        0      1      5
  12Q GAIN WILD-TYPE     11     19     22
D21V6, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1                0                 11
  CLUS_2                1                 19
  CLUS_3                5                 22
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12Q GAIN MUTATED        5      1      0
  12Q GAIN WILD-TYPE     20      9     23
D21V7, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1                5                 20
  CLUS_2                1                  9
  CLUS_3                0                 23
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12Q GAIN MUTATED        0      5      1
  12Q GAIN WILD-TYPE     12     21     19
D21V8, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1                0                 12
  CLUS_2                5                 21
  CLUS_3                1                 19

Clustering(22) Variable = 13Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q GAIN MUTATED        1      4      1
  13Q GAIN WILD-TYPE     19     38     18
D22V1, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1                1                 19
  CLUS_2                4                 38
  CLUS_3                1                 18
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q GAIN MUTATED        1      4      0
  13Q GAIN WILD-TYPE     26     30     19
D22V2, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1                1                 26
  CLUS_2                4                 30
  CLUS_3                0                 19
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  13Q GAIN MUTATED        1      1      1      1
  13Q GAIN WILD-TYPE     20     11     11      9
D22V3, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1                1                 20
  CLUS_2                1                 11
  CLUS_3                1                 11
  CLUS_4                1                  9
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q GAIN MUTATED        0      1      3
  13Q GAIN WILD-TYPE      5     21     25
D22V4, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1                0                  5
  CLUS_2                1                 21
  CLUS_3                3                 25
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q GAIN MUTATED        1      1      2
  13Q GAIN WILD-TYPE     28     10     16
D22V5, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1                1                 28
  CLUS_2                1                 10
  CLUS_3                2                 16
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q GAIN MUTATED        2      2      0
  13Q GAIN WILD-TYPE      9     18     27
D22V6, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1                2                  9
  CLUS_2                2                 18
  CLUS_3                0                 27
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q GAIN MUTATED        0      1      3
  13Q GAIN WILD-TYPE     25      9     20
D22V7, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1                0                 25
  CLUS_2                1                  9
  CLUS_3                3                 20
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q GAIN MUTATED        2      0      2
  13Q GAIN WILD-TYPE     10     26     18
D22V8, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1                2                 10
  CLUS_2                0                 26
  CLUS_3                2                 18

Clustering(23) Variable = 14Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q GAIN MUTATED        1      3      5
  14Q GAIN WILD-TYPE     19     39     14
D23V1, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1                1                 19
  CLUS_2                3                 39
  CLUS_3                5                 14
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q GAIN MUTATED        4      2      3
  14Q GAIN WILD-TYPE     23     32     16
D23V2, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1                4                 23
  CLUS_2                2                 32
  CLUS_3                3                 16
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  14Q GAIN MUTATED        6      1      2      0
  14Q GAIN WILD-TYPE     15     11     10     10
D23V3, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1                6                 15
  CLUS_2                1                 11
  CLUS_3                2                 10
  CLUS_4                0                 10
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q GAIN MUTATED        0      6      3
  14Q GAIN WILD-TYPE      5     16     25
D23V4, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1                0                  5
  CLUS_2                6                 16
  CLUS_3                3                 25
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q GAIN MUTATED        6      1      2
  14Q GAIN WILD-TYPE     23     10     16
D23V5, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1                6                 23
  CLUS_2                1                 10
  CLUS_3                2                 16
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q GAIN MUTATED        2      2      5
  14Q GAIN WILD-TYPE      9     18     22
D23V6, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1                2                  9
  CLUS_2                2                 18
  CLUS_3                5                 22
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q GAIN MUTATED        5      1      3
  14Q GAIN WILD-TYPE     20      9     20
D23V7, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1                5                 20
  CLUS_2                1                  9
  CLUS_3                3                 20
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q GAIN MUTATED        2      5      2
  14Q GAIN WILD-TYPE     10     21     18
D23V8, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1                2                 10
  CLUS_2                5                 21
  CLUS_3                2                 18

Clustering(24) Variable = 15Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q GAIN MUTATED        1      2      3
  15Q GAIN WILD-TYPE     19     40     16
D24V1, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1                1                 19
  CLUS_2                2                 40
  CLUS_3                3                 16
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q GAIN MUTATED        1      1      3
  15Q GAIN WILD-TYPE     26     33     16
D24V2, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1                1                 26
  CLUS_2                1                 33
  CLUS_3                3                 16
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  15Q GAIN MUTATED        2      2      0      0
  15Q GAIN WILD-TYPE     19     10     12     10
D24V3, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1                2                 19
  CLUS_2                2                 10
  CLUS_3                0                 12
  CLUS_4                0                 10
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q GAIN MUTATED        0      2      2
  15Q GAIN WILD-TYPE      5     20     26
D24V4, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1                0                  5
  CLUS_2                2                 20
  CLUS_3                2                 26
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q GAIN MUTATED        3      2      0
  15Q GAIN WILD-TYPE     26      9     18
D24V5, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1                3                 26
  CLUS_2                2                  9
  CLUS_3                0                 18
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q GAIN MUTATED        0      3      2
  15Q GAIN WILD-TYPE     11     17     25
D24V6, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1                0                 11
  CLUS_2                3                 17
  CLUS_3                2                 25
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q GAIN MUTATED        2      1      2
  15Q GAIN WILD-TYPE     23      9     21
D24V7, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1                2                 23
  CLUS_2                1                  9
  CLUS_3                2                 21
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q GAIN MUTATED        0      2      3
  15Q GAIN WILD-TYPE     12     24     17
D24V8, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1                0                 12
  CLUS_2                2                 24
  CLUS_3                3                 17

Clustering(25) Variable = 16P GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P GAIN MUTATED        1      1      6
  16P GAIN WILD-TYPE     19     41     13
D25V1, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1                1                 19
  CLUS_2                1                 41
  CLUS_3                6                 13
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P GAIN MUTATED        5      0      3
  16P GAIN WILD-TYPE     22     34     16
D25V2, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1                5                 22
  CLUS_2                0                 34
  CLUS_3                3                 16
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16P GAIN MUTATED        5      1      0      0
  16P GAIN WILD-TYPE     16     11     12     10
D25V3, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1                5                 16
  CLUS_2                1                 11
  CLUS_3                0                 12
  CLUS_4                0                 10
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P GAIN MUTATED        0      5      1
  16P GAIN WILD-TYPE      5     17     27
D25V4, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1                0                  5
  CLUS_2                5                 17
  CLUS_3                1                 27
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P GAIN MUTATED        6      0      1
  16P GAIN WILD-TYPE     23     11     17
D25V5, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1                6                 23
  CLUS_2                0                 11
  CLUS_3                1                 17
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P GAIN MUTATED        0      1      6
  16P GAIN WILD-TYPE     11     19     21
D25V6, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1                0                 11
  CLUS_2                1                 19
  CLUS_3                6                 21
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P GAIN MUTATED        6      1      0
  16P GAIN WILD-TYPE     19      9     23
D25V7, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1                6                 19
  CLUS_2                1                  9
  CLUS_3                0                 23
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P GAIN MUTATED        0      6      1
  16P GAIN WILD-TYPE     12     20     19
D25V8, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1                0                 12
  CLUS_2                6                 20
  CLUS_3                1                 19

Clustering(26) Variable = 16Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q GAIN MUTATED        2      1      6
  16Q GAIN WILD-TYPE     18     41     13
D26V1, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1                2                 18
  CLUS_2                1                 41
  CLUS_3                6                 13
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q GAIN MUTATED        6      0      3
  16Q GAIN WILD-TYPE     21     34     16
D26V2, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1                6                 21
  CLUS_2                0                 34
  CLUS_3                3                 16
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16Q GAIN MUTATED        7      1      0      0
  16Q GAIN WILD-TYPE     14     11     12     10
D26V3, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1                7                 14
  CLUS_2                1                 11
  CLUS_3                0                 12
  CLUS_4                0                 10
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q GAIN MUTATED        1      6      1
  16Q GAIN WILD-TYPE      4     16     27
D26V4, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1                1                  4
  CLUS_2                6                 16
  CLUS_3                1                 27
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q GAIN MUTATED        7      0      1
  16Q GAIN WILD-TYPE     22     11     17
D26V5, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1                7                 22
  CLUS_2                0                 11
  CLUS_3                1                 17
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q GAIN MUTATED        0      1      7
  16Q GAIN WILD-TYPE     11     19     20
D26V6, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1                0                 11
  CLUS_2                1                 19
  CLUS_3                7                 20
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q GAIN MUTATED        7      1      0
  16Q GAIN WILD-TYPE     18      9     23
D26V7, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1                7                 18
  CLUS_2                1                  9
  CLUS_3                0                 23
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q GAIN MUTATED        0      7      1
  16Q GAIN WILD-TYPE     12     19     19
D26V8, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1                0                 12
  CLUS_2                7                 19
  CLUS_3                1                 19

Clustering(27) Variable = 17Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q GAIN MUTATED        1      1      2
  17Q GAIN WILD-TYPE     19     41     17
D27V1, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1                1                 19
  CLUS_2                1                 41
  CLUS_3                2                 17
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q GAIN MUTATED        3      0      1
  17Q GAIN WILD-TYPE     24     34     18
D27V2, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1                3                 24
  CLUS_2                0                 34
  CLUS_3                1                 18
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17Q GAIN MUTATED        4      0      0      0
  17Q GAIN WILD-TYPE     17     12     12     10
D27V3, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1                4                 17
  CLUS_2                0                 12
  CLUS_3                0                 12
  CLUS_4                0                 10
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q GAIN MUTATED        0      4      0
  17Q GAIN WILD-TYPE      5     18     28
D27V4, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1                0                  5
  CLUS_2                4                 18
  CLUS_3                0                 28
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q GAIN MUTATED        4      0      0
  17Q GAIN WILD-TYPE     25     11     18
D27V5, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1                4                 25
  CLUS_2                0                 11
  CLUS_3                0                 18
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q GAIN MUTATED        0      0      4
  17Q GAIN WILD-TYPE     11     20     23
D27V6, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1                0                 11
  CLUS_2                0                 20
  CLUS_3                4                 23
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q GAIN MUTATED        4      0      0
  17Q GAIN WILD-TYPE     21     10     23
D27V7, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1                4                 21
  CLUS_2                0                 10
  CLUS_3                0                 23
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q GAIN MUTATED        0      4      0
  17Q GAIN WILD-TYPE     12     22     20
D27V8, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1                0                 12
  CLUS_2                4                 22
  CLUS_3                0                 20

Clustering(28) Variable = 18P GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P GAIN MUTATED        8      0      2
  18P GAIN WILD-TYPE     12     42     17
D28V1, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1                8                 12
  CLUS_2                0                 42
  CLUS_3                2                 17
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P GAIN MUTATED        8      0      1
  18P GAIN WILD-TYPE     19     34     18
D28V2, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1                8                 19
  CLUS_2                0                 34
  CLUS_3                1                 18
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18P GAIN MUTATED        6      0      0      0
  18P GAIN WILD-TYPE     15     12     12     10
D28V3, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1                6                 15
  CLUS_2                0                 12
  CLUS_3                0                 12
  CLUS_4                0                 10
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P GAIN MUTATED        0      6      0
  18P GAIN WILD-TYPE      5     16     28
D28V4, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1                0                  5
  CLUS_2                6                 16
  CLUS_3                0                 28
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P GAIN MUTATED        7      0      0
  18P GAIN WILD-TYPE     22     11     18
D28V5, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1                7                 22
  CLUS_2                0                 11
  CLUS_3                0                 18
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P GAIN MUTATED        0      0      7
  18P GAIN WILD-TYPE     11     20     20
D28V6, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1                0                 11
  CLUS_2                0                 20
  CLUS_3                7                 20
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P GAIN MUTATED        7      0      0
  18P GAIN WILD-TYPE     18     10     23
D28V7, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1                7                 18
  CLUS_2                0                 10
  CLUS_3                0                 23
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P GAIN MUTATED        0      7      0
  18P GAIN WILD-TYPE     12     19     20
D28V8, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1                0                 12
  CLUS_2                7                 19
  CLUS_3                0                 20

Clustering(29) Variable = 18Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q GAIN MUTATED        2      0      1
  18Q GAIN WILD-TYPE     18     42     18
D29V1, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1                2                 18
  CLUS_2                0                 42
  CLUS_3                1                 18
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q GAIN MUTATED        1      0      1
  18Q GAIN WILD-TYPE     26     34     18
D29V2, multiclass
[1] "Remove cluster labels:" "18Q GAIN MUTATED"      
clus
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                 2                 78 
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A545         TCGA-FB-A5VM 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-FB-A78T         TCGA-FZ-5919         TCGA-FZ-5920 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-FZ-5922         TCGA-FZ-5923         TCGA-FZ-5924 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-FZ-5926         TCGA-H6-8124         TCGA-H6-A45N 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-H8-A6C1         TCGA-HV-A5A3         TCGA-HV-A5A4 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-HV-A5A5         TCGA-HV-A5A6         TCGA-HZ-7289 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-HZ-7918         TCGA-HZ-7919         TCGA-HZ-7920 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-HZ-7922         TCGA-HZ-7923         TCGA-HZ-7924 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-HZ-7925         TCGA-HZ-7926         TCGA-HZ-8001 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-HZ-8002         TCGA-HZ-8003         TCGA-HZ-8005 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-HZ-8315         TCGA-HZ-8317         TCGA-HZ-8519 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-HZ-8636         TCGA-HZ-8637         TCGA-HZ-8638 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-HZ-A49G         TCGA-HZ-A49H         TCGA-HZ-A49I 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-HZ-A4BH         TCGA-HZ-A4BK         TCGA-IB-7644 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-IB-7645         TCGA-IB-7646         TCGA-IB-7647 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-IB-7649         TCGA-IB-7651         TCGA-IB-7652 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-IB-7654         TCGA-IB-7885         TCGA-IB-7887 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-IB-7888         TCGA-IB-7889         TCGA-IB-7890 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-IB-7891         TCGA-IB-7897         TCGA-IB-8126 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-IB-8127         TCGA-IB-A5SO         TCGA-IB-A5SP 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-IB-A5SQ         TCGA-IB-A5SS         TCGA-IB-A5ST 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-M8-A5N4         TCGA-OE-A75W         TCGA-PZ-A5RE 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-Q3-A5QY         TCGA-US-A774         TCGA-US-A779 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-US-A77E         TCGA-US-A77G         TCGA-US-A77J 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18Q GAIN MUTATED        2      0      0      0
  18Q GAIN WILD-TYPE     19     12     12     10
D29V3, multiclass
[1] "Remove cluster labels:" "18Q GAIN MUTATED"      
clus
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                 2                 53 
        TCGA-F2-6879         TCGA-F2-7273         TCGA-F2-7276 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-F2-A44G         TCGA-F2-A44H         TCGA-FB-A4P5 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-FB-A545         TCGA-H6-8124         TCGA-H6-A45N 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-HV-A5A3         TCGA-HV-A5A4         TCGA-HV-A5A5 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-HV-A5A6         TCGA-HZ-7918         TCGA-HZ-7919 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-HZ-7920         TCGA-HZ-7922         TCGA-HZ-7923 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-HZ-7924         TCGA-HZ-7925         TCGA-HZ-7926 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-HZ-8001         TCGA-HZ-8002         TCGA-HZ-8003 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-HZ-8315         TCGA-HZ-8317         TCGA-HZ-8519 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-HZ-8636         TCGA-HZ-8637         TCGA-HZ-8638 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-HZ-A49G         TCGA-HZ-A49H         TCGA-HZ-A49I 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-HZ-A4BH         TCGA-HZ-A4BK         TCGA-IB-7644 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-IB-7645         TCGA-IB-7646         TCGA-IB-7647 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-IB-7649         TCGA-IB-7651         TCGA-IB-7652 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-IB-7654         TCGA-IB-7885         TCGA-IB-7887 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-IB-7888         TCGA-IB-7889         TCGA-IB-7890 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-IB-7891         TCGA-IB-7897         TCGA-IB-8126 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-IB-8127         TCGA-M8-A5N4 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q GAIN MUTATED        0      2      0
  18Q GAIN WILD-TYPE      5     20     28
D29V4, multiclass
[1] "Remove cluster labels:" "18Q GAIN MUTATED"      
clus
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                 2                 53 
        TCGA-F2-6879         TCGA-F2-7273         TCGA-F2-7276 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-F2-A44G         TCGA-F2-A44H         TCGA-FB-A4P5 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-FB-A545         TCGA-H6-8124         TCGA-H6-A45N 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-HV-A5A3         TCGA-HV-A5A4         TCGA-HV-A5A5 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-HV-A5A6         TCGA-HZ-7918         TCGA-HZ-7919 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-HZ-7920         TCGA-HZ-7922         TCGA-HZ-7923 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-HZ-7924         TCGA-HZ-7925         TCGA-HZ-7926 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-HZ-8001         TCGA-HZ-8002         TCGA-HZ-8003 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-HZ-8315         TCGA-HZ-8317         TCGA-HZ-8519 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-HZ-8636         TCGA-HZ-8637         TCGA-HZ-8638 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-HZ-A49G         TCGA-HZ-A49H         TCGA-HZ-A49I 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-HZ-A4BH         TCGA-HZ-A4BK         TCGA-IB-7644 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-IB-7645         TCGA-IB-7646         TCGA-IB-7647 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-IB-7649         TCGA-IB-7651         TCGA-IB-7652 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-IB-7654         TCGA-IB-7885         TCGA-IB-7887 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-IB-7888         TCGA-IB-7889         TCGA-IB-7890 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-IB-7891         TCGA-IB-7897         TCGA-IB-8126 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-IB-8127         TCGA-M8-A5N4 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q GAIN MUTATED        2      0      0
  18Q GAIN WILD-TYPE     27     11     18
D29V5, multiclass
[1] "Remove cluster labels:" "18Q GAIN MUTATED"      
clus
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                 2                 56 
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A545         TCGA-H6-8124 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-H6-A45N         TCGA-HV-A5A3         TCGA-HV-A5A4 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-HV-A5A5         TCGA-HV-A5A6         TCGA-HZ-7289 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-HZ-7918         TCGA-HZ-7919         TCGA-HZ-7920 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-HZ-7922         TCGA-HZ-7923         TCGA-HZ-7924 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-HZ-7925         TCGA-HZ-7926         TCGA-HZ-8001 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-HZ-8002         TCGA-HZ-8003         TCGA-HZ-8005 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-HZ-8315         TCGA-HZ-8317         TCGA-HZ-8519 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-HZ-8636         TCGA-HZ-8637         TCGA-HZ-8638 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-HZ-A49G         TCGA-HZ-A49H         TCGA-HZ-A49I 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-HZ-A4BH         TCGA-HZ-A4BK         TCGA-IB-7644 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-IB-7645         TCGA-IB-7646         TCGA-IB-7647 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-IB-7649         TCGA-IB-7651         TCGA-IB-7652 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-IB-7654         TCGA-IB-7885         TCGA-IB-7887 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-IB-7888         TCGA-IB-7889         TCGA-IB-7890 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-IB-7891         TCGA-IB-7897         TCGA-IB-8126 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-IB-8127         TCGA-M8-A5N4 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q GAIN MUTATED        0      0      2
  18Q GAIN WILD-TYPE     11     20     25
D29V6, multiclass
[1] "Remove cluster labels:" "18Q GAIN MUTATED"      
clus
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                 2                 56 
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A545         TCGA-H6-8124 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-H6-A45N         TCGA-HV-A5A3         TCGA-HV-A5A4 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-HV-A5A5         TCGA-HV-A5A6         TCGA-HZ-7289 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-HZ-7918         TCGA-HZ-7919         TCGA-HZ-7920 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-HZ-7922         TCGA-HZ-7923         TCGA-HZ-7924 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-HZ-7925         TCGA-HZ-7926         TCGA-HZ-8001 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-HZ-8002         TCGA-HZ-8003         TCGA-HZ-8005 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-HZ-8315         TCGA-HZ-8317         TCGA-HZ-8519 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-HZ-8636         TCGA-HZ-8637         TCGA-HZ-8638 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-HZ-A49G         TCGA-HZ-A49H         TCGA-HZ-A49I 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-HZ-A4BH         TCGA-HZ-A4BK         TCGA-IB-7644 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-IB-7645         TCGA-IB-7646         TCGA-IB-7647 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-IB-7649         TCGA-IB-7651         TCGA-IB-7652 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-IB-7654         TCGA-IB-7885         TCGA-IB-7887 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-IB-7888         TCGA-IB-7889         TCGA-IB-7890 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-IB-7891         TCGA-IB-7897         TCGA-IB-8126 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-IB-8127         TCGA-M8-A5N4 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q GAIN MUTATED        2      0      0
  18Q GAIN WILD-TYPE     23     10     23
D29V7, multiclass
[1] "Remove cluster labels:" "18Q GAIN MUTATED"      
clus
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                 2                 56 
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A545         TCGA-H6-8124 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-H6-A45N         TCGA-HV-A5A3         TCGA-HV-A5A4 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-HV-A5A5         TCGA-HV-A5A6         TCGA-HZ-7289 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-HZ-7918         TCGA-HZ-7919         TCGA-HZ-7920 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-HZ-7922         TCGA-HZ-7923         TCGA-HZ-7924 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-HZ-7925         TCGA-HZ-7926         TCGA-HZ-8001 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-HZ-8002         TCGA-HZ-8003         TCGA-HZ-8005 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-HZ-8315         TCGA-HZ-8317         TCGA-HZ-8519 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-HZ-8636         TCGA-HZ-8637         TCGA-HZ-8638 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-HZ-A49G         TCGA-HZ-A49H         TCGA-HZ-A49I 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-HZ-A4BH         TCGA-HZ-A4BK         TCGA-IB-7644 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-IB-7645         TCGA-IB-7646         TCGA-IB-7647 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-IB-7649         TCGA-IB-7651         TCGA-IB-7652 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-IB-7654         TCGA-IB-7885         TCGA-IB-7887 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-IB-7888         TCGA-IB-7889         TCGA-IB-7890 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-IB-7891         TCGA-IB-7897         TCGA-IB-8126 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-IB-8127         TCGA-M8-A5N4 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q GAIN MUTATED        0      2      0
  18Q GAIN WILD-TYPE     12     24     20
D29V8, multiclass
[1] "Remove cluster labels:" "18Q GAIN MUTATED"      
clus
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                 2                 56 
        TCGA-F2-6879         TCGA-F2-6880         TCGA-F2-7273 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-F2-7276         TCGA-F2-A44G         TCGA-F2-A44H 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-FB-A4P5         TCGA-FB-A545         TCGA-H6-8124 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-H6-A45N         TCGA-HV-A5A3         TCGA-HV-A5A4 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-HV-A5A5         TCGA-HV-A5A6         TCGA-HZ-7289 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-HZ-7918         TCGA-HZ-7919         TCGA-HZ-7920 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-HZ-7922         TCGA-HZ-7923         TCGA-HZ-7924 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-HZ-7925         TCGA-HZ-7926         TCGA-HZ-8001 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-HZ-8002         TCGA-HZ-8003         TCGA-HZ-8005 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-HZ-8315         TCGA-HZ-8317         TCGA-HZ-8519 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-HZ-8636         TCGA-HZ-8637         TCGA-HZ-8638 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-HZ-A49G         TCGA-HZ-A49H         TCGA-HZ-A49I 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-HZ-A4BH         TCGA-HZ-A4BK         TCGA-IB-7644 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-IB-7645         TCGA-IB-7646         TCGA-IB-7647 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-IB-7649         TCGA-IB-7651         TCGA-IB-7652 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-IB-7654         TCGA-IB-7885         TCGA-IB-7887 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-IB-7888         TCGA-IB-7889         TCGA-IB-7890 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-IB-7891         TCGA-IB-7897         TCGA-IB-8126 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-IB-8127         TCGA-M8-A5N4 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 

Clustering(30) Variable = 19P GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P GAIN MUTATED        0      1      3
  19P GAIN WILD-TYPE     20     41     16
D30V1, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1                0                 20
  CLUS_2                1                 41
  CLUS_3                3                 16
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P GAIN MUTATED        1      1      2
  19P GAIN WILD-TYPE     26     33     17
D30V2, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1                1                 26
  CLUS_2                1                 33
  CLUS_3                2                 17
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19P GAIN MUTATED        3      1      0      0
  19P GAIN WILD-TYPE     18     11     12     10
D30V3, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1                3                 18
  CLUS_2                1                 11
  CLUS_3                0                 12
  CLUS_4                0                 10
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P GAIN MUTATED        0      3      1
  19P GAIN WILD-TYPE      5     19     27
D30V4, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1                0                  5
  CLUS_2                3                 19
  CLUS_3                1                 27
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P GAIN MUTATED        3      1      0
  19P GAIN WILD-TYPE     26     10     18
D30V5, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1                3                 26
  CLUS_2                1                 10
  CLUS_3                0                 18
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P GAIN MUTATED        0      1      3
  19P GAIN WILD-TYPE     11     19     24
D30V6, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1                0                 11
  CLUS_2                1                 19
  CLUS_3                3                 24
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P GAIN MUTATED        3      0      1
  19P GAIN WILD-TYPE     22     10     22
D30V7, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1                3                 22
  CLUS_2                0                 10
  CLUS_3                1                 22
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P GAIN MUTATED        0      3      1
  19P GAIN WILD-TYPE     12     23     19
D30V8, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1                0                 12
  CLUS_2                3                 23
  CLUS_3                1                 19

Clustering(31) Variable = 19Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q GAIN MUTATED        2      3      4
  19Q GAIN WILD-TYPE     18     39     15
D31V1, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1                2                 18
  CLUS_2                3                 39
  CLUS_3                4                 15
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q GAIN MUTATED        4      2      3
  19Q GAIN WILD-TYPE     23     32     16
D31V2, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1                4                 23
  CLUS_2                2                 32
  CLUS_3                3                 16
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19Q GAIN MUTATED        6      2      1      0
  19Q GAIN WILD-TYPE     15     10     11     10
D31V3, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1                6                 15
  CLUS_2                2                 10
  CLUS_3                1                 11
  CLUS_4                0                 10
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q GAIN MUTATED        0      6      3
  19Q GAIN WILD-TYPE      5     16     25
D31V4, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1                0                  5
  CLUS_2                6                 16
  CLUS_3                3                 25
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q GAIN MUTATED        6      2      1
  19Q GAIN WILD-TYPE     23      9     17
D31V5, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1                6                 23
  CLUS_2                2                  9
  CLUS_3                1                 17
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q GAIN MUTATED        0      3      6
  19Q GAIN WILD-TYPE     11     17     21
D31V6, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1                0                 11
  CLUS_2                3                 17
  CLUS_3                6                 21
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q GAIN MUTATED        5      2      2
  19Q GAIN WILD-TYPE     20      8     21
D31V7, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1                5                 20
  CLUS_2                2                  8
  CLUS_3                2                 21
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q GAIN MUTATED        1      5      3
  19Q GAIN WILD-TYPE     11     21     17
D31V8, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1                1                 11
  CLUS_2                5                 21
  CLUS_3                3                 17

Clustering(32) Variable = 20P GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P GAIN MUTATED        1      3      9
  20P GAIN WILD-TYPE     19     39     10
D32V1, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1                1                 19
  CLUS_2                3                 39
  CLUS_3                9                 10
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P GAIN MUTATED        4      1      7
  20P GAIN WILD-TYPE     23     33     12
D32V2, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1                4                 23
  CLUS_2                1                 33
  CLUS_3                7                 12
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20P GAIN MUTATED        6      0      1      0
  20P GAIN WILD-TYPE     15     12     11     10
D32V3, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1                6                 15
  CLUS_2                0                 12
  CLUS_3                1                 11
  CLUS_4                0                 10
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P GAIN MUTATED        0      6      1
  20P GAIN WILD-TYPE      5     16     27
D32V4, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1                0                  5
  CLUS_2                6                 16
  CLUS_3                1                 27
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P GAIN MUTATED        8      0      1
  20P GAIN WILD-TYPE     21     11     17
D32V5, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1                8                 21
  CLUS_2                0                 11
  CLUS_3                1                 17
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P GAIN MUTATED        1      1      7
  20P GAIN WILD-TYPE     10     19     20
D32V6, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1                1                 10
  CLUS_2                1                 19
  CLUS_3                7                 20
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P GAIN MUTATED        7      1      1
  20P GAIN WILD-TYPE     18      9     22
D32V7, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1                7                 18
  CLUS_2                1                  9
  CLUS_3                1                 22
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P GAIN MUTATED        1      7      1
  20P GAIN WILD-TYPE     11     19     19
D32V8, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1                1                 11
  CLUS_2                7                 19
  CLUS_3                1                 19

Clustering(33) Variable = 20Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20Q GAIN MUTATED        2      5     10
  20Q GAIN WILD-TYPE     18     37      9
D33V1, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1                2                 18
  CLUS_2                5                 37
  CLUS_3               10                  9
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20Q GAIN MUTATED        6      3      7
  20Q GAIN WILD-TYPE     21     31     12
D33V2, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1                6                 21
  CLUS_2                3                 31
  CLUS_3                7                 12
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20Q GAIN MUTATED        8      1      1      0
  20Q GAIN WILD-TYPE     13     11     11     10
D33V3, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1                8                 13
  CLUS_2                1                 11
  CLUS_3                1                 11
  CLUS_4                0                 10
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20Q GAIN MUTATED        0      8      2
  20Q GAIN WILD-TYPE      5     14     26
D33V4, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1                0                  5
  CLUS_2                8                 14
  CLUS_3                2                 26
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20Q GAIN MUTATED       10      1      1
  20Q GAIN WILD-TYPE     19     10     17
D33V5, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1               10                 19
  CLUS_2                1                 10
  CLUS_3                1                 17
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20Q GAIN MUTATED        1      2      9
  20Q GAIN WILD-TYPE     10     18     18
D33V6, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1                1                 10
  CLUS_2                2                 18
  CLUS_3                9                 18
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20Q GAIN MUTATED        9      2      1
  20Q GAIN WILD-TYPE     16      8     22
D33V7, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1                9                 16
  CLUS_2                2                  8
  CLUS_3                1                 22
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20Q GAIN MUTATED        1      9      2
  20Q GAIN WILD-TYPE     11     17     18
D33V8, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1                1                 11
  CLUS_2                9                 17
  CLUS_3                2                 18

Clustering(34) Variable = 22Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q GAIN MUTATED        2      0      2
  22Q GAIN WILD-TYPE     18     42     17
D34V1, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1                2                 18
  CLUS_2                0                 42
  CLUS_3                2                 17
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q GAIN MUTATED        3      0      0
  22Q GAIN WILD-TYPE     24     34     19
D34V2, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1                3                 24
  CLUS_2                0                 34
  CLUS_3                0                 19
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  22Q GAIN MUTATED        3      0      0      0
  22Q GAIN WILD-TYPE     18     12     12     10
D34V3, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1                3                 18
  CLUS_2                0                 12
  CLUS_3                0                 12
  CLUS_4                0                 10
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q GAIN MUTATED        0      3      0
  22Q GAIN WILD-TYPE      5     19     28
D34V4, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1                0                  5
  CLUS_2                3                 19
  CLUS_3                0                 28
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q GAIN MUTATED        3      0      0
  22Q GAIN WILD-TYPE     26     11     18
D34V5, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1                3                 26
  CLUS_2                0                 11
  CLUS_3                0                 18
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q GAIN MUTATED        0      1      2
  22Q GAIN WILD-TYPE     11     19     25
D34V6, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1                0                 11
  CLUS_2                1                 19
  CLUS_3                2                 25
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q GAIN MUTATED        2      1      0
  22Q GAIN WILD-TYPE     23      9     23
D34V7, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1                2                 23
  CLUS_2                1                  9
  CLUS_3                0                 23
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q GAIN MUTATED        0      2      1
  22Q GAIN WILD-TYPE     12     24     19
D34V8, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1                0                 12
  CLUS_2                2                 24
  CLUS_3                1                 19

Clustering(35) Variable = XQ GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ GAIN MUTATED        1      2      0
  XQ GAIN WILD-TYPE     19     40     19
D35V1, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1               1                19
  CLUS_2               2                40
  CLUS_3               0                19
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ GAIN MUTATED        1      1      1
  XQ GAIN WILD-TYPE     26     33     18
D35V2, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1               1                26
  CLUS_2               1                33
  CLUS_3               1                18
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XQ GAIN MUTATED        0      0      2      0
  XQ GAIN WILD-TYPE     21     12     10     10
D35V3, multiclass
[1] "Remove cluster labels:" "XQ GAIN MUTATED"       
clus
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
                2                53 
       TCGA-F2-6879        TCGA-F2-7273        TCGA-F2-7276        TCGA-F2-A44G 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A545        TCGA-H6-8124 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-H6-A45N        TCGA-HV-A5A3        TCGA-HV-A5A4        TCGA-HV-A5A5 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-HV-A5A6        TCGA-HZ-7918        TCGA-HZ-7919        TCGA-HZ-7920 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924        TCGA-HZ-7925 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-HZ-7926        TCGA-HZ-8002        TCGA-HZ-8003        TCGA-HZ-8315 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-HZ-8317        TCGA-HZ-8519        TCGA-HZ-8636        TCGA-HZ-8638 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-HZ-A49G        TCGA-HZ-A49H        TCGA-HZ-A49I        TCGA-HZ-A4BH 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645        TCGA-IB-7646 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651        TCGA-IB-7652 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-IB-7654        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-M8-A5N4 
"XQ GAIN WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ GAIN MUTATED        0      0      2
  XQ GAIN WILD-TYPE      5     22     26
D35V4, multiclass
[1] "Remove cluster labels:" "XQ GAIN MUTATED"       
clus
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
                2                53 
       TCGA-F2-6879        TCGA-F2-7273        TCGA-F2-7276        TCGA-F2-A44G 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A545        TCGA-H6-8124 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-H6-A45N        TCGA-HV-A5A3        TCGA-HV-A5A4        TCGA-HV-A5A5 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-HV-A5A6        TCGA-HZ-7918        TCGA-HZ-7919        TCGA-HZ-7920 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924        TCGA-HZ-7925 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-HZ-7926        TCGA-HZ-8002        TCGA-HZ-8003        TCGA-HZ-8315 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-HZ-8317        TCGA-HZ-8519        TCGA-HZ-8636        TCGA-HZ-8638 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-HZ-A49G        TCGA-HZ-A49H        TCGA-HZ-A49I        TCGA-HZ-A4BH 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645        TCGA-IB-7646 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651        TCGA-IB-7652 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-IB-7654        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-M8-A5N4 
"XQ GAIN WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ GAIN MUTATED        0      0      2
  XQ GAIN WILD-TYPE     29     11     16
D35V5, multiclass
[1] "Remove cluster labels:" "XQ GAIN MUTATED"       
clus
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
                2                56 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A545 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-H6-8124        TCGA-H6-A45N        TCGA-HV-A5A3        TCGA-HV-A5A4 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-HV-A5A5        TCGA-HV-A5A6        TCGA-HZ-7289        TCGA-HZ-7918 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7920        TCGA-HZ-7922        TCGA-HZ-7923 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-HZ-7924        TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8002 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-HZ-8519        TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-HZ-A49H        TCGA-HZ-A49I        TCGA-HZ-A4BH        TCGA-HZ-A4BK 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-IB-7644        TCGA-IB-7645        TCGA-IB-7646        TCGA-IB-7647 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-IB-7649        TCGA-IB-7651        TCGA-IB-7652        TCGA-IB-7654 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887        TCGA-IB-7888 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891        TCGA-IB-7893 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127        TCGA-M8-A5N4 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ GAIN MUTATED        1      0      1
  XQ GAIN WILD-TYPE     10     20     26
D35V6, multiclass
[1] "Remove cluster labels:" "XQ GAIN MUTATED"       
clus
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
                2                56 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A545 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-H6-8124        TCGA-H6-A45N        TCGA-HV-A5A3        TCGA-HV-A5A4 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-HV-A5A5        TCGA-HV-A5A6        TCGA-HZ-7289        TCGA-HZ-7918 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7920        TCGA-HZ-7922        TCGA-HZ-7923 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-HZ-7924        TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8002 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-HZ-8519        TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-HZ-A49H        TCGA-HZ-A49I        TCGA-HZ-A4BH        TCGA-HZ-A4BK 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-IB-7644        TCGA-IB-7645        TCGA-IB-7646        TCGA-IB-7647 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-IB-7649        TCGA-IB-7651        TCGA-IB-7652        TCGA-IB-7654 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887        TCGA-IB-7888 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891        TCGA-IB-7893 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127        TCGA-M8-A5N4 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ GAIN MUTATED        0      0      2
  XQ GAIN WILD-TYPE     25     10     21
D35V7, multiclass
[1] "Remove cluster labels:" "XQ GAIN MUTATED"       
clus
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
                2                56 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A545 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-H6-8124        TCGA-H6-A45N        TCGA-HV-A5A3        TCGA-HV-A5A4 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-HV-A5A5        TCGA-HV-A5A6        TCGA-HZ-7289        TCGA-HZ-7918 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7920        TCGA-HZ-7922        TCGA-HZ-7923 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-HZ-7924        TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8002 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-HZ-8519        TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-HZ-A49H        TCGA-HZ-A49I        TCGA-HZ-A4BH        TCGA-HZ-A4BK 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-IB-7644        TCGA-IB-7645        TCGA-IB-7646        TCGA-IB-7647 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-IB-7649        TCGA-IB-7651        TCGA-IB-7652        TCGA-IB-7654 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887        TCGA-IB-7888 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891        TCGA-IB-7893 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127        TCGA-M8-A5N4 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ GAIN MUTATED        2      0      0
  XQ GAIN WILD-TYPE     10     26     20
D35V8, multiclass
[1] "Remove cluster labels:" "XQ GAIN MUTATED"       
clus
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
                2                56 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A545 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-H6-8124        TCGA-H6-A45N        TCGA-HV-A5A3        TCGA-HV-A5A4 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-HV-A5A5        TCGA-HV-A5A6        TCGA-HZ-7289        TCGA-HZ-7918 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7920        TCGA-HZ-7922        TCGA-HZ-7923 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-HZ-7924        TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8002 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-HZ-8519        TCGA-HZ-8636        TCGA-HZ-8638        TCGA-HZ-A49G 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-HZ-A49H        TCGA-HZ-A49I        TCGA-HZ-A4BH        TCGA-HZ-A4BK 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-IB-7644        TCGA-IB-7645        TCGA-IB-7646        TCGA-IB-7647 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-IB-7649        TCGA-IB-7651        TCGA-IB-7652        TCGA-IB-7654 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887        TCGA-IB-7888 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891        TCGA-IB-7893 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127        TCGA-M8-A5N4 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 

Clustering(36) Variable = 1P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P LOSS MUTATED        1      2      8
  1P LOSS WILD-TYPE     19     40     11
D36V1, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1               1                19
  CLUS_2               2                40
  CLUS_3               8                11
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P LOSS MUTATED        4      0      7
  1P LOSS WILD-TYPE     23     34     12
D36V2, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1               4                23
  CLUS_2               0                34
  CLUS_3               7                12
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1P LOSS MUTATED        3      1      0      0
  1P LOSS WILD-TYPE     18     11     12     10
D36V3, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1               3                18
  CLUS_2               1                11
  CLUS_3               0                12
  CLUS_4               0                10
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P LOSS MUTATED        0      3      1
  1P LOSS WILD-TYPE      5     19     27
D36V4, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1               0                 5
  CLUS_2               3                19
  CLUS_3               1                27
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P LOSS MUTATED        4      1      0
  1P LOSS WILD-TYPE     25     10     18
D36V5, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1               4                25
  CLUS_2               1                10
  CLUS_3               0                18
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P LOSS MUTATED        0      2      3
  1P LOSS WILD-TYPE     11     18     24
D36V6, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1               0                11
  CLUS_2               2                18
  CLUS_3               3                24
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P LOSS MUTATED        3      1      1
  1P LOSS WILD-TYPE     22      9     22
D36V7, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1               3                22
  CLUS_2               1                 9
  CLUS_3               1                22
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P LOSS MUTATED        0      3      2
  1P LOSS WILD-TYPE     12     23     18
D36V8, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1               0                12
  CLUS_2               3                23
  CLUS_3               2                18

Clustering(37) Variable = 1Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q LOSS MUTATED        0      0      3
  1Q LOSS WILD-TYPE     20     42     16
D37V1, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1               0                20
  CLUS_2               0                42
  CLUS_3               3                16
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q LOSS MUTATED        1      0      2
  1Q LOSS WILD-TYPE     26     34     17
D37V2, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1               1                26
  CLUS_2               0                34
  CLUS_3               2                17
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1Q LOSS MUTATED        0      0      0      0
  1Q LOSS WILD-TYPE     21     12     12     10
D37V3, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q LOSS MUTATED        0      0      0
  1Q LOSS WILD-TYPE      5     22     28
D37V4, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q LOSS MUTATED        1      0      0
  1Q LOSS WILD-TYPE     28     11     18
D37V5, multiclass
[1] "Remove cluster labels:" "1Q LOSS MUTATED"       
clus
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
                1                57 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A545 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-H6-8124        TCGA-H6-A45N        TCGA-HV-A5A3        TCGA-HV-A5A4 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-HV-A5A5        TCGA-HV-A5A6        TCGA-HZ-7289        TCGA-HZ-7918 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7920        TCGA-HZ-7922        TCGA-HZ-7923 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-HZ-7924        TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-HZ-8002        TCGA-HZ-8003        TCGA-HZ-8315        TCGA-HZ-8317 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-HZ-8519        TCGA-HZ-8636        TCGA-HZ-8637        TCGA-HZ-8638 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-HZ-A49G        TCGA-HZ-A49H        TCGA-HZ-A49I        TCGA-HZ-A4BH 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645        TCGA-IB-7646 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651        TCGA-IB-7652 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-IB-7654        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-M8-A5N4 
"1Q LOSS WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q LOSS MUTATED        0      0      1
  1Q LOSS WILD-TYPE     11     20     26
D37V6, multiclass
[1] "Remove cluster labels:" "1Q LOSS MUTATED"       
clus
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
                1                57 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A545 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-H6-8124        TCGA-H6-A45N        TCGA-HV-A5A3        TCGA-HV-A5A4 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-HV-A5A5        TCGA-HV-A5A6        TCGA-HZ-7289        TCGA-HZ-7918 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7920        TCGA-HZ-7922        TCGA-HZ-7923 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-HZ-7924        TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-HZ-8002        TCGA-HZ-8003        TCGA-HZ-8315        TCGA-HZ-8317 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-HZ-8519        TCGA-HZ-8636        TCGA-HZ-8637        TCGA-HZ-8638 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-HZ-A49G        TCGA-HZ-A49H        TCGA-HZ-A49I        TCGA-HZ-A4BH 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645        TCGA-IB-7646 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651        TCGA-IB-7652 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-IB-7654        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-M8-A5N4 
"1Q LOSS WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q LOSS MUTATED        1      0      0
  1Q LOSS WILD-TYPE     24     10     23
D37V7, multiclass
[1] "Remove cluster labels:" "1Q LOSS MUTATED"       
clus
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
                1                57 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A545 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-H6-8124        TCGA-H6-A45N        TCGA-HV-A5A3        TCGA-HV-A5A4 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-HV-A5A5        TCGA-HV-A5A6        TCGA-HZ-7289        TCGA-HZ-7918 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7920        TCGA-HZ-7922        TCGA-HZ-7923 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-HZ-7924        TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-HZ-8002        TCGA-HZ-8003        TCGA-HZ-8315        TCGA-HZ-8317 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-HZ-8519        TCGA-HZ-8636        TCGA-HZ-8637        TCGA-HZ-8638 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-HZ-A49G        TCGA-HZ-A49H        TCGA-HZ-A49I        TCGA-HZ-A4BH 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645        TCGA-IB-7646 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651        TCGA-IB-7652 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-IB-7654        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-M8-A5N4 
"1Q LOSS WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q LOSS MUTATED        0      1      0
  1Q LOSS WILD-TYPE     12     25     20
D37V8, multiclass
[1] "Remove cluster labels:" "1Q LOSS MUTATED"       
clus
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
                1                57 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-FB-A545 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-H6-8124        TCGA-H6-A45N        TCGA-HV-A5A3        TCGA-HV-A5A4 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-HV-A5A5        TCGA-HV-A5A6        TCGA-HZ-7289        TCGA-HZ-7918 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-HZ-7919        TCGA-HZ-7920        TCGA-HZ-7922        TCGA-HZ-7923 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-HZ-7924        TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-HZ-8002        TCGA-HZ-8003        TCGA-HZ-8315        TCGA-HZ-8317 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-HZ-8519        TCGA-HZ-8636        TCGA-HZ-8637        TCGA-HZ-8638 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-HZ-A49G        TCGA-HZ-A49H        TCGA-HZ-A49I        TCGA-HZ-A4BH 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645        TCGA-IB-7646 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651        TCGA-IB-7652 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-IB-7654        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-IB-8127 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-M8-A5N4 
"1Q LOSS WILD-TYPE" 

Clustering(38) Variable = 2P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P LOSS MUTATED        2      1      3
  2P LOSS WILD-TYPE     18     41     16
D38V1, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1               2                18
  CLUS_2               1                41
  CLUS_3               3                16
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P LOSS MUTATED        4      1      1
  2P LOSS WILD-TYPE     23     33     18
D38V2, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1               4                23
  CLUS_2               1                33
  CLUS_3               1                18
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2P LOSS MUTATED        2      1      1      1
  2P LOSS WILD-TYPE     19     11     11      9
D38V3, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1               2                19
  CLUS_2               1                11
  CLUS_3               1                11
  CLUS_4               1                 9
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P LOSS MUTATED        0      3      2
  2P LOSS WILD-TYPE      5     19     26
D38V4, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1               0                 5
  CLUS_2               3                19
  CLUS_3               2                26
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P LOSS MUTATED        4      1      1
  2P LOSS WILD-TYPE     25     10     17
D38V5, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1               4                25
  CLUS_2               1                10
  CLUS_3               1                17
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P LOSS MUTATED        1      1      4
  2P LOSS WILD-TYPE     10     19     23
D38V6, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1               1                10
  CLUS_2               1                19
  CLUS_3               4                23
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P LOSS MUTATED        4      1      1
  2P LOSS WILD-TYPE     21      9     22
D38V7, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1               4                21
  CLUS_2               1                 9
  CLUS_3               1                22
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P LOSS MUTATED        1      4      1
  2P LOSS WILD-TYPE     11     22     19
D38V8, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1               1                11
  CLUS_2               4                22
  CLUS_3               1                19

Clustering(39) Variable = 3P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P LOSS MUTATED        2      2      8
  3P LOSS WILD-TYPE     18     40     11
D39V1, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1               2                18
  CLUS_2               2                40
  CLUS_3               8                11
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P LOSS MUTATED        5      2      5
  3P LOSS WILD-TYPE     22     32     14
D39V2, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1               5                22
  CLUS_2               2                32
  CLUS_3               5                14
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3P LOSS MUTATED        6      2      1      0
  3P LOSS WILD-TYPE     15     10     11     10
D39V3, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1               6                15
  CLUS_2               2                10
  CLUS_3               1                11
  CLUS_4               0                10
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P LOSS MUTATED        1      5      3
  3P LOSS WILD-TYPE      4     17     25
D39V4, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1               1                 4
  CLUS_2               5                17
  CLUS_3               3                25
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P LOSS MUTATED        7      2      1
  3P LOSS WILD-TYPE     22      9     17
D39V5, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1               7                22
  CLUS_2               2                 9
  CLUS_3               1                17
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P LOSS MUTATED        1      2      7
  3P LOSS WILD-TYPE     10     18     20
D39V6, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1               1                10
  CLUS_2               2                18
  CLUS_3               7                20
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P LOSS MUTATED        7      1      2
  3P LOSS WILD-TYPE     18      9     21
D39V7, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1               7                18
  CLUS_2               1                 9
  CLUS_3               2                21
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P LOSS MUTATED        1      7      2
  3P LOSS WILD-TYPE     11     19     18
D39V8, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1               1                11
  CLUS_2               7                19
  CLUS_3               2                18

Clustering(40) Variable = 3Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q LOSS MUTATED        1      1      4
  3Q LOSS WILD-TYPE     19     41     15
D40V1, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1               1                19
  CLUS_2               1                41
  CLUS_3               4                15
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q LOSS MUTATED        2      1      3
  3Q LOSS WILD-TYPE     25     33     16
D40V2, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1               2                25
  CLUS_2               1                33
  CLUS_3               3                16
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3Q LOSS MUTATED        3      1      0      0
  3Q LOSS WILD-TYPE     18     11     12     10
D40V3, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1               3                18
  CLUS_2               1                11
  CLUS_3               0                12
  CLUS_4               0                10
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q LOSS MUTATED        0      3      1
  3Q LOSS WILD-TYPE      5     19     27
D40V4, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1               0                 5
  CLUS_2               3                19
  CLUS_3               1                27
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q LOSS MUTATED        3      1      0
  3Q LOSS WILD-TYPE     26     10     18
D40V5, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1               3                26
  CLUS_2               1                10
  CLUS_3               0                18
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q LOSS MUTATED        0      1      3
  3Q LOSS WILD-TYPE     11     19     24
D40V6, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1               0                11
  CLUS_2               1                19
  CLUS_3               3                24
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q LOSS MUTATED        3      0      1
  3Q LOSS WILD-TYPE     22     10     22
D40V7, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1               3                22
  CLUS_2               0                10
  CLUS_3               1                22
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q LOSS MUTATED        0      3      1
  3Q LOSS WILD-TYPE     12     23     19
D40V8, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1               0                12
  CLUS_2               3                23
  CLUS_3               1                19

Clustering(41) Variable = 4P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P LOSS MUTATED        3      1      5
  4P LOSS WILD-TYPE     17     41     14
D41V1, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1               3                17
  CLUS_2               1                41
  CLUS_3               5                14
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P LOSS MUTATED        5      1      3
  4P LOSS WILD-TYPE     22     33     16
D41V2, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1               5                22
  CLUS_2               1                33
  CLUS_3               3                16
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4P LOSS MUTATED        4      1      0      1
  4P LOSS WILD-TYPE     17     11     12      9
D41V3, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1               4                17
  CLUS_2               1                11
  CLUS_3               0                12
  CLUS_4               1                 9
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P LOSS MUTATED        0      5      1
  4P LOSS WILD-TYPE      5     17     27
D41V4, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1               0                 5
  CLUS_2               5                17
  CLUS_3               1                27
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P LOSS MUTATED        5      1      0
  4P LOSS WILD-TYPE     24     10     18
D41V5, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1               5                24
  CLUS_2               1                10
  CLUS_3               0                18
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P LOSS MUTATED        0      1      5
  4P LOSS WILD-TYPE     11     19     22
D41V6, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1               0                11
  CLUS_2               1                19
  CLUS_3               5                22
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P LOSS MUTATED        5      1      0
  4P LOSS WILD-TYPE     20      9     23
D41V7, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1               5                20
  CLUS_2               1                 9
  CLUS_3               0                23
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P LOSS MUTATED        0      5      1
  4P LOSS WILD-TYPE     12     21     19
D41V8, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1               0                12
  CLUS_2               5                21
  CLUS_3               1                19

Clustering(42) Variable = 4Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q LOSS MUTATED        3      1      4
  4Q LOSS WILD-TYPE     17     41     15
D42V1, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1               3                17
  CLUS_2               1                41
  CLUS_3               4                15
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q LOSS MUTATED        4      0      4
  4Q LOSS WILD-TYPE     23     34     15
D42V2, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1               4                23
  CLUS_2               0                34
  CLUS_3               4                15
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4Q LOSS MUTATED        3      0      1      1
  4Q LOSS WILD-TYPE     18     12     11      9
D42V3, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1               3                18
  CLUS_2               0                12
  CLUS_3               1                11
  CLUS_4               1                 9
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q LOSS MUTATED        0      4      1
  4Q LOSS WILD-TYPE      5     18     27
D42V4, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1               0                 5
  CLUS_2               4                18
  CLUS_3               1                27
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q LOSS MUTATED        4      0      1
  4Q LOSS WILD-TYPE     25     11     17
D42V5, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1               4                25
  CLUS_2               0                11
  CLUS_3               1                17
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q LOSS MUTATED        1      0      4
  4Q LOSS WILD-TYPE     10     20     23
D42V6, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1               1                10
  CLUS_2               0                20
  CLUS_3               4                23
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q LOSS MUTATED        4      0      1
  4Q LOSS WILD-TYPE     21     10     22
D42V7, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1               4                21
  CLUS_2               0                10
  CLUS_3               1                22
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q LOSS MUTATED        1      4      0
  4Q LOSS WILD-TYPE     11     22     20
D42V8, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1               1                11
  CLUS_2               4                22
  CLUS_3               0                20

Clustering(43) Variable = 5P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P LOSS MUTATED        0      0      3
  5P LOSS WILD-TYPE     20     42     16
D43V1, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1               0                20
  CLUS_2               0                42
  CLUS_3               3                16
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P LOSS MUTATED        2      0      1
  5P LOSS WILD-TYPE     25     34     18
D43V2, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1               2                25
  CLUS_2               0                34
  CLUS_3               1                18
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5P LOSS MUTATED        2      0      0      0
  5P LOSS WILD-TYPE     19     12     12     10
D43V3, multiclass
[1] "Remove cluster labels:" "5P LOSS MUTATED"       
clus
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
                2                53 
       TCGA-F2-6879        TCGA-F2-7273        TCGA-F2-7276        TCGA-F2-A44G 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-H6-8124        TCGA-H6-A45N 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-HV-A5A3        TCGA-HV-A5A4        TCGA-HV-A5A5        TCGA-HV-A5A6 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-HZ-7918        TCGA-HZ-7919        TCGA-HZ-7920        TCGA-HZ-7922 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-HZ-7923        TCGA-HZ-7924        TCGA-HZ-7925        TCGA-HZ-7926 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-HZ-8001        TCGA-HZ-8002        TCGA-HZ-8003        TCGA-HZ-8315 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-HZ-8317        TCGA-HZ-8519        TCGA-HZ-8636        TCGA-HZ-8637 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H        TCGA-HZ-A49I 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-IB-7652        TCGA-IB-7654        TCGA-IB-7885        TCGA-IB-7886 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-IB-7887        TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-IB-7891        TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-M8-A5N4 
"5P LOSS WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P LOSS MUTATED        0      2      0
  5P LOSS WILD-TYPE      5     20     28
D43V4, multiclass
[1] "Remove cluster labels:" "5P LOSS MUTATED"       
clus
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
                2                53 
       TCGA-F2-6879        TCGA-F2-7273        TCGA-F2-7276        TCGA-F2-A44G 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-H6-8124        TCGA-H6-A45N 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-HV-A5A3        TCGA-HV-A5A4        TCGA-HV-A5A5        TCGA-HV-A5A6 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-HZ-7918        TCGA-HZ-7919        TCGA-HZ-7920        TCGA-HZ-7922 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-HZ-7923        TCGA-HZ-7924        TCGA-HZ-7925        TCGA-HZ-7926 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-HZ-8001        TCGA-HZ-8002        TCGA-HZ-8003        TCGA-HZ-8315 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-HZ-8317        TCGA-HZ-8519        TCGA-HZ-8636        TCGA-HZ-8637 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-HZ-8638        TCGA-HZ-A49G        TCGA-HZ-A49H        TCGA-HZ-A49I 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-HZ-A4BH        TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-IB-7646        TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-IB-7652        TCGA-IB-7654        TCGA-IB-7885        TCGA-IB-7886 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-IB-7887        TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-IB-7891        TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-M8-A5N4 
"5P LOSS WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P LOSS MUTATED        2      0      0
  5P LOSS WILD-TYPE     27     11     18
D43V5, multiclass
[1] "Remove cluster labels:" "5P LOSS MUTATED"       
clus
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
                2                56 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-H6-8124 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-H6-A45N        TCGA-HV-A5A3        TCGA-HV-A5A4        TCGA-HV-A5A5 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-HV-A5A6        TCGA-HZ-7289        TCGA-HZ-7918        TCGA-HZ-7919 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-HZ-7920        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-HZ-8519        TCGA-HZ-8636        TCGA-HZ-8637        TCGA-HZ-8638 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-HZ-A49G        TCGA-HZ-A49H        TCGA-HZ-A49I        TCGA-HZ-A4BH 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645        TCGA-IB-7646 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651        TCGA-IB-7652 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-IB-7654        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-M8-A5N4 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P LOSS MUTATED        0      0      2
  5P LOSS WILD-TYPE     11     20     25
D43V6, multiclass
[1] "Remove cluster labels:" "5P LOSS MUTATED"       
clus
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
                2                56 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-H6-8124 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-H6-A45N        TCGA-HV-A5A3        TCGA-HV-A5A4        TCGA-HV-A5A5 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-HV-A5A6        TCGA-HZ-7289        TCGA-HZ-7918        TCGA-HZ-7919 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-HZ-7920        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-HZ-8519        TCGA-HZ-8636        TCGA-HZ-8637        TCGA-HZ-8638 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-HZ-A49G        TCGA-HZ-A49H        TCGA-HZ-A49I        TCGA-HZ-A4BH 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645        TCGA-IB-7646 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651        TCGA-IB-7652 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-IB-7654        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-M8-A5N4 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P LOSS MUTATED        2      0      0
  5P LOSS WILD-TYPE     23     10     23
D43V7, multiclass
[1] "Remove cluster labels:" "5P LOSS MUTATED"       
clus
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
                2                56 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-H6-8124 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-H6-A45N        TCGA-HV-A5A3        TCGA-HV-A5A4        TCGA-HV-A5A5 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-HV-A5A6        TCGA-HZ-7289        TCGA-HZ-7918        TCGA-HZ-7919 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-HZ-7920        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-HZ-8519        TCGA-HZ-8636        TCGA-HZ-8637        TCGA-HZ-8638 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-HZ-A49G        TCGA-HZ-A49H        TCGA-HZ-A49I        TCGA-HZ-A4BH 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645        TCGA-IB-7646 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651        TCGA-IB-7652 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-IB-7654        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-M8-A5N4 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P LOSS MUTATED        0      2      0
  5P LOSS WILD-TYPE     12     24     20
D43V8, multiclass
[1] "Remove cluster labels:" "5P LOSS MUTATED"       
clus
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
                2                56 
       TCGA-F2-6879        TCGA-F2-6880        TCGA-F2-7273        TCGA-F2-7276 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-F2-A44G        TCGA-F2-A44H        TCGA-FB-A4P5        TCGA-H6-8124 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-H6-A45N        TCGA-HV-A5A3        TCGA-HV-A5A4        TCGA-HV-A5A5 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-HV-A5A6        TCGA-HZ-7289        TCGA-HZ-7918        TCGA-HZ-7919 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-HZ-7920        TCGA-HZ-7922        TCGA-HZ-7923        TCGA-HZ-7924 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-HZ-7925        TCGA-HZ-7926        TCGA-HZ-8001        TCGA-HZ-8002 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-HZ-8003        TCGA-HZ-8005        TCGA-HZ-8315        TCGA-HZ-8317 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-HZ-8519        TCGA-HZ-8636        TCGA-HZ-8637        TCGA-HZ-8638 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-HZ-A49G        TCGA-HZ-A49H        TCGA-HZ-A49I        TCGA-HZ-A4BH 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-HZ-A4BK        TCGA-IB-7644        TCGA-IB-7645        TCGA-IB-7646 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-IB-7647        TCGA-IB-7649        TCGA-IB-7651        TCGA-IB-7652 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-IB-7654        TCGA-IB-7885        TCGA-IB-7886        TCGA-IB-7887 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-IB-7888        TCGA-IB-7889        TCGA-IB-7890        TCGA-IB-7891 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-IB-7893        TCGA-IB-7897        TCGA-IB-8126        TCGA-M8-A5N4 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 

Clustering(44) Variable = 5Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q LOSS MUTATED        0      1      6
  5Q LOSS WILD-TYPE     20     41     13
D44V1, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1               0                20
  CLUS_2               1                41
  CLUS_3               6                13
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q LOSS MUTATED        4      0      3
  5Q LOSS WILD-TYPE     23     34     16
D44V2, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1               4                23
  CLUS_2               0                34
  CLUS_3               3                16
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5Q LOSS MUTATED        3      0      0      0
  5Q LOSS WILD-TYPE     18     12     12     10
D44V3, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1               3                18
  CLUS_2               0                12
  CLUS_3               0                12
  CLUS_4               0                10
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q LOSS MUTATED        0      3      0
  5Q LOSS WILD-TYPE      5     19     28
D44V4, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1               0                 5
  CLUS_2               3                19
  CLUS_3               0                28
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q LOSS MUTATED        5      0      0
  5Q LOSS WILD-TYPE     24     11     18
D44V5, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1               5                24
  CLUS_2               0                11
  CLUS_3               0                18
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q LOSS MUTATED        0      1      4
  5Q LOSS WILD-TYPE     11     19     23
D44V6, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1               0                11
  CLUS_2               1                19
  CLUS_3               4                23
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q LOSS MUTATED        4      1      0
  5Q LOSS WILD-TYPE     21      9     23
D44V7, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1               4                21
  CLUS_2               1                 9
  CLUS_3               0                23
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q LOSS MUTATED        0      4      1
  5Q LOSS WILD-TYPE     12     22     19
D44V8, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1               0                12
  CLUS_2               4                22
  CLUS_3               1                19

Clustering(45) Variable = 6P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P LOSS MUTATED        9      6     13
  6P LOSS WILD-TYPE     11     36      6
D45V1, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1               9                11
  CLUS_2               6                36
  CLUS_3              13                 6
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P LOSS MUTATED       15      2     10
  6P LOSS WILD-TYPE     12     32      9
D45V2, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1              15                12
  CLUS_2               2                32
  CLUS_3              10                 9
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6P LOSS MUTATED       13      2      2      0
  6P LOSS WILD-TYPE      8     10     10     10
D45V3, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1              13                 8
  CLUS_2               2                10
  CLUS_3               2                10
  CLUS_4               0                10
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P LOSS MUTATED        1     12      4
  6P LOSS WILD-TYPE      4     10     24
D45V4, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1               1                 4
  CLUS_2              12                10
  CLUS_3               4                24
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P LOSS MUTATED       14      2      2
  6P LOSS WILD-TYPE     15      9     16
D45V5, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1              14                15
  CLUS_2               2                 9
  CLUS_3               2                16
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P LOSS MUTATED        1      2     15
  6P LOSS WILD-TYPE     10     18     12
D45V6, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1               1                10
  CLUS_2               2                18
  CLUS_3              15                12
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P LOSS MUTATED       14      0      4
  6P LOSS WILD-TYPE     11     10     19
D45V7, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1              14                11
  CLUS_2               0                10
  CLUS_3               4                19
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P LOSS MUTATED        2     14      2
  6P LOSS WILD-TYPE     10     12     18
D45V8, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1               2                10
  CLUS_2              14                12
  CLUS_3               2                18

Clustering(46) Variable = 6Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q LOSS MUTATED       11      9     14
  6Q LOSS WILD-TYPE      9     33      5
D46V1, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1              11                 9
  CLUS_2               9                33
  CLUS_3              14                 5
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q LOSS MUTATED       20      3     10
  6Q LOSS WILD-TYPE      7     31      9
D46V2, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1              20                 7
  CLUS_2               3                31
  CLUS_3              10                 9
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6Q LOSS MUTATED       16      2      2      2
  6Q LOSS WILD-TYPE      5     10     10      8
D46V3, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1              16                 5
  CLUS_2               2                10
  CLUS_3               2                10
  CLUS_4               2                 8
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q LOSS MUTATED        0     18      4
  6Q LOSS WILD-TYPE      5      4     24
D46V4, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1               0                 5
  CLUS_2              18                 4
  CLUS_3               4                24
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q LOSS MUTATED       19      2      2
  6Q LOSS WILD-TYPE     10      9     16
D46V5, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1              19                10
  CLUS_2               2                 9
  CLUS_3               2                16
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q LOSS MUTATED        1      3     19
  6Q LOSS WILD-TYPE     10     17      8
D46V6, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1               1                10
  CLUS_2               3                17
  CLUS_3              19                 8
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q LOSS MUTATED       18      1      4
  6Q LOSS WILD-TYPE      7      9     19
D46V7, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1              18                 7
  CLUS_2               1                 9
  CLUS_3               4                19
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q LOSS MUTATED        2     18      3
  6Q LOSS WILD-TYPE     10      8     17
D46V8, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1               2                10
  CLUS_2              18                 8
  CLUS_3               3                17

Clustering(47) Variable = 8P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P LOSS MUTATED        5      2      4
  8P LOSS WILD-TYPE     15     40     15
D47V1, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1               5                15
  CLUS_2               2                40
  CLUS_3               4                15
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P LOSS MUTATED        6      1      4
  8P LOSS WILD-TYPE     21     33     15
D47V2, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1               6                21
  CLUS_2               1                33
  CLUS_3               4                15
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8P LOSS MUTATED        6      0      1      0
  8P LOSS WILD-TYPE     15     12     11     10
D47V3, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1               6                15
  CLUS_2               0                12
  CLUS_3               1                11
  CLUS_4               0                10
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P LOSS MUTATED        0      6      1
  8P LOSS WILD-TYPE      5     16     27
D47V4, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1               0                 5
  CLUS_2               6                16
  CLUS_3               1                27
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P LOSS MUTATED        8      0      1
  8P LOSS WILD-TYPE     21     11     17
D47V5, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1               8                21
  CLUS_2               0                11
  CLUS_3               1                17
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P LOSS MUTATED        1      0      8
  8P LOSS WILD-TYPE     10     20     19
D47V6, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1               1                10
  CLUS_2               0                20
  CLUS_3               8                19
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P LOSS MUTATED        8      0      1
  8P LOSS WILD-TYPE     17     10     22
D47V7, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1               8                17
  CLUS_2               0                10
  CLUS_3               1                22
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P LOSS MUTATED        1      8      0
  8P LOSS WILD-TYPE     11     18     20
D47V8, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1               1                11
  CLUS_2               8                18
  CLUS_3               0                20

Clustering(48) Variable = 9P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P LOSS MUTATED       10      9     15
  9P LOSS WILD-TYPE     10     33      4
D48V1, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1              10                10
  CLUS_2               9                33
  CLUS_3              15                 4
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P LOSS MUTATED       16      9      8
  9P LOSS WILD-TYPE     11     25     11
D48V2, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1              16                11
  CLUS_2               9                25
  CLUS_3               8                11
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9P LOSS MUTATED       11      5      3      2
  9P LOSS WILD-TYPE     10      7      9      8
D48V3, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1              11                10
  CLUS_2               5                 7
  CLUS_3               3                 9
  CLUS_4               2                 8
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P LOSS MUTATED        0     12      9
  9P LOSS WILD-TYPE      5     10     19
D48V4, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1               0                 5
  CLUS_2              12                10
  CLUS_3               9                19
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P LOSS MUTATED       14      5      4
  9P LOSS WILD-TYPE     15      6     14
D48V5, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1              14                15
  CLUS_2               5                 6
  CLUS_3               4                14
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P LOSS MUTATED        4      6     13
  9P LOSS WILD-TYPE      7     14     14
D48V6, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1               4                 7
  CLUS_2               6                14
  CLUS_3              13                14
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P LOSS MUTATED       13      3      7
  9P LOSS WILD-TYPE     12      7     16
D48V7, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1              13                12
  CLUS_2               3                 7
  CLUS_3               7                16
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P LOSS MUTATED        4     13      6
  9P LOSS WILD-TYPE      8     13     14
D48V8, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1               4                 8
  CLUS_2              13                13
  CLUS_3               6                14

Clustering(49) Variable = 9Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q LOSS MUTATED        7      7      6
  9Q LOSS WILD-TYPE     13     35     13
D49V1, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1               7                13
  CLUS_2               7                35
  CLUS_3               6                13
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q LOSS MUTATED        8      8      3
  9Q LOSS WILD-TYPE     19     26     16
D49V2, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1               8                19
  CLUS_2               8                26
  CLUS_3               3                16
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9Q LOSS MUTATED        4      4      2      1
  9Q LOSS WILD-TYPE     17      8     10      9
D49V3, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1               4                17
  CLUS_2               4                 8
  CLUS_3               2                10
  CLUS_4               1                 9
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q LOSS MUTATED        1      3      7
  9Q LOSS WILD-TYPE      4     19     21
D49V4, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1               1                 4
  CLUS_2               3                19
  CLUS_3               7                21
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q LOSS MUTATED        5      4      3
  9Q LOSS WILD-TYPE     24      7     15
D49V5, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1               5                24
  CLUS_2               4                 7
  CLUS_3               3                15
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q LOSS MUTATED        3      5      4
  9Q LOSS WILD-TYPE      8     15     23
D49V6, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1               3                 8
  CLUS_2               5                15
  CLUS_3               4                23
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q LOSS MUTATED        4      2      6
  9Q LOSS WILD-TYPE     21      8     17
D49V7, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1               4                21
  CLUS_2               2                 8
  CLUS_3               6                17
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q LOSS MUTATED        3      4      5
  9Q LOSS WILD-TYPE      9     22     15
D49V8, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1               3                 9
  CLUS_2               4                22
  CLUS_3               5                15

Clustering(50) Variable = 10P LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P LOSS MUTATED        5      2      6
  10P LOSS WILD-TYPE     15     40     13
D50V1, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1                5                 15
  CLUS_2                2                 40
  CLUS_3                6                 13
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P LOSS MUTATED        5      2      5
  10P LOSS WILD-TYPE     22     32     14
D50V2, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1                5                 22
  CLUS_2                2                 32
  CLUS_3                5                 14
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10P LOSS MUTATED        7      0      0      1
  10P LOSS WILD-TYPE     14     12     12      9
D50V3, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1                7                 14
  CLUS_2                0                 12
  CLUS_3                0                 12
  CLUS_4                1                  9
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P LOSS MUTATED        0      8      0
  10P LOSS WILD-TYPE      5     14     28
D50V4, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1                0                  5
  CLUS_2                8                 14
  CLUS_3                0                 28
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P LOSS MUTATED       10      0      0
  10P LOSS WILD-TYPE     19     11     18
D50V5, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1               10                 19
  CLUS_2                0                 11
  CLUS_3                0                 18
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P LOSS MUTATED        0      0     10
  10P LOSS WILD-TYPE     11     20     17
D50V6, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1                0                 11
  CLUS_2                0                 20
  CLUS_3               10                 17
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P LOSS MUTATED       10      0      0
  10P LOSS WILD-TYPE     15     10     23
D50V7, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1               10                 15
  CLUS_2                0                 10
  CLUS_3                0                 23
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P LOSS MUTATED        0     10      0
  10P LOSS WILD-TYPE     12     16     20
D50V8, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1                0                 12
  CLUS_2               10                 16
  CLUS_3                0                 20

Clustering(51) Variable = 10Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q LOSS MUTATED        4      1      7
  10Q LOSS WILD-TYPE     16     41     12
D51V1, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1                4                 16
  CLUS_2                1                 41
  CLUS_3                7                 12
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q LOSS MUTATED        6      2      3
  10Q LOSS WILD-TYPE     21     32     16
D51V2, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1                6                 21
  CLUS_2                2                 32
  CLUS_3                3                 16
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10Q LOSS MUTATED        7      1      0      1
  10Q LOSS WILD-TYPE     14     11     12      9
D51V3, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1                7                 14
  CLUS_2                1                 11
  CLUS_3                0                 12
  CLUS_4                1                  9
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q LOSS MUTATED        0      8      1
  10Q LOSS WILD-TYPE      5     14     27
D51V4, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1                0                  5
  CLUS_2                8                 14
  CLUS_3                1                 27
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q LOSS MUTATED       10      1      0
  10Q LOSS WILD-TYPE     19     10     18
D51V5, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1               10                 19
  CLUS_2                1                 10
  CLUS_3                0                 18
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q LOSS MUTATED        0      1     10
  10Q LOSS WILD-TYPE     11     19     17
D51V6, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1                0                 11
  CLUS_2                1                 19
  CLUS_3               10                 17
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q LOSS MUTATED       10      1      0
  10Q LOSS WILD-TYPE     15      9     23
D51V7, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1               10                 15
  CLUS_2                1                  9
  CLUS_3                0                 23
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q LOSS MUTATED        0     10      1
  10Q LOSS WILD-TYPE     12     16     19
D51V8, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1                0                 12
  CLUS_2               10                 16
  CLUS_3                1                 19

Clustering(52) Variable = 11P LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P LOSS MUTATED        0      2      4
  11P LOSS WILD-TYPE     20     40     15
D52V1, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1                0                 20
  CLUS_2                2                 40
  CLUS_3                4                 15
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P LOSS MUTATED        2      2      2
  11P LOSS WILD-TYPE     25     32     17
D52V2, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1                2                 25
  CLUS_2                2                 32
  CLUS_3                2                 17
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11P LOSS MUTATED        1      4      0      0
  11P LOSS WILD-TYPE     20      8     12     10
D52V3, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1                1                 20
  CLUS_2                4                  8
  CLUS_3                0                 12
  CLUS_4                0                 10
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P LOSS MUTATED        0      1      4
  11P LOSS WILD-TYPE      5     21     24
D52V4, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1                0                  5
  CLUS_2                1                 21
  CLUS_3                4                 24
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P LOSS MUTATED        1      4      0
  11P LOSS WILD-TYPE     28      7     18
D52V5, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1                1                 28
  CLUS_2                4                  7
  CLUS_3                0                 18
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P LOSS MUTATED        0      4      1
  11P LOSS WILD-TYPE     11     16     26
D52V6, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1                0                 11
  CLUS_2                4                 16
  CLUS_3                1                 26
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P LOSS MUTATED        1      2      2
  11P LOSS WILD-TYPE     24      8     21
D52V7, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1                1                 24
  CLUS_2                2                  8
  CLUS_3                2                 21
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P LOSS MUTATED        0      1      4
  11P LOSS WILD-TYPE     12     25     16
D52V8, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1                0                 12
  CLUS_2                1                 25
  CLUS_3                4                 16

Clustering(53) Variable = 11Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q LOSS MUTATED        1      2      3
  11Q LOSS WILD-TYPE     19     40     16
D53V1, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1                1                 19
  CLUS_2                2                 40
  CLUS_3                3                 16
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q LOSS MUTATED        3      2      1
  11Q LOSS WILD-TYPE     24     32     18
D53V2, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1                3                 24
  CLUS_2                2                 32
  CLUS_3                1                 18
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11Q LOSS MUTATED        0      2      1      0
  11Q LOSS WILD-TYPE     21     10     11     10
D53V3, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1                0                 21
  CLUS_2                2                 10
  CLUS_3                1                 11
  CLUS_4                0                 10
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q LOSS MUTATED        0      0      3
  11Q LOSS WILD-TYPE      5     22     25
D53V4, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1                0                  5
  CLUS_2                0                 22
  CLUS_3                3                 25
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q LOSS MUTATED        1      2      1
  11Q LOSS WILD-TYPE     28      9     17
D53V5, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1                1                 28
  CLUS_2                2                  9
  CLUS_3                1                 17
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q LOSS MUTATED        1      2      1
  11Q LOSS WILD-TYPE     10     18     26
D53V6, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1                1                 10
  CLUS_2                2                 18
  CLUS_3                1                 26
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q LOSS MUTATED        1      1      2
  11Q LOSS WILD-TYPE     24      9     21
D53V7, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1                1                 24
  CLUS_2                1                  9
  CLUS_3                2                 21
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q LOSS MUTATED        1      1      2
  11Q LOSS WILD-TYPE     11     25     18
D53V8, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1                1                 11
  CLUS_2                1                 25
  CLUS_3                2                 18

Clustering(54) Variable = 12P LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12P LOSS MUTATED        3      1      4
  12P LOSS WILD-TYPE     17     41     15
D54V1, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1                3                 17
  CLUS_2                1                 41
  CLUS_3                4                 15
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12P LOSS MUTATED        4      1      3
  12P LOSS WILD-TYPE     23     33     16
D54V2, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1                4                 23
  CLUS_2                1                 33
  CLUS_3                3                 16
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12P LOSS MUTATED        5      0      0      0
  12P LOSS WILD-TYPE     16     12     12     10
D54V3, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1                5                 16
  CLUS_2                0                 12
  CLUS_3                0                 12
  CLUS_4                0                 10
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12P LOSS MUTATED        0      5      0
  12P LOSS WILD-TYPE      5     17     28
D54V4, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1                0                  5
  CLUS_2                5                 17
  CLUS_3                0                 28
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12P LOSS MUTATED        5      0      0
  12P LOSS WILD-TYPE     24     11     18
D54V5, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1                5                 24
  CLUS_2                0                 11
  CLUS_3                0                 18
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12P LOSS MUTATED        0      0      5
  12P LOSS WILD-TYPE     11     20     22
D54V6, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1                0                 11
  CLUS_2                0                 20
  CLUS_3                5                 22
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12P LOSS MUTATED        5      0      0
  12P LOSS WILD-TYPE     20     10     23
D54V7, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1                5                 20
  CLUS_2                0                 10
  CLUS_3                0                 23
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12P LOSS MUTATED        0      5      0
  12P LOSS WILD-TYPE     12     21     20
D54V8, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1                0                 12
  CLUS_2                5                 21
  CLUS_3                0                 20

Clustering(55) Variable = 12Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12Q LOSS MUTATED        2      1      7
  12Q LOSS WILD-TYPE     18     41     12
D55V1, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1                2                 18
  CLUS_2                1                 41
  CLUS_3                7                 12
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12Q LOSS MUTATED        5      1      4
  12Q LOSS WILD-TYPE     22     33     15
D55V2, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1                5                 22
  CLUS_2                1                 33
  CLUS_3                4                 15
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12Q LOSS MUTATED        6      1      0      0
  12Q LOSS WILD-TYPE     15     11     12     10
D55V3, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1                6                 15
  CLUS_2                1                 11
  CLUS_3                0                 12
  CLUS_4                0                 10
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12Q LOSS MUTATED        0      6      1
  12Q LOSS WILD-TYPE      5     16     27
D55V4, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1                0                  5
  CLUS_2                6                 16
  CLUS_3                1                 27
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12Q LOSS MUTATED        6      1      0
  12Q LOSS WILD-TYPE     23     10     18
D55V5, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1                6                 23
  CLUS_2                1                 10
  CLUS_3                0                 18
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12Q LOSS MUTATED        0      1      6
  12Q LOSS WILD-TYPE     11     19     21
D55V6, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1                0                 11
  CLUS_2                1                 19
  CLUS_3                6                 21
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12Q LOSS MUTATED        6      1      0
  12Q LOSS WILD-TYPE     19      9     23
D55V7, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1                6                 19
  CLUS_2                1                  9
  CLUS_3                0                 23
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12Q LOSS MUTATED        0      6      1
  12Q LOSS WILD-TYPE     12     20     19
D55V8, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1                0                 12
  CLUS_2                6                 20
  CLUS_3                1                 19

Clustering(56) Variable = 13Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q LOSS MUTATED        2      1      7
  13Q LOSS WILD-TYPE     18     41     12
D56V1, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1                2                 18
  CLUS_2                1                 41
  CLUS_3                7                 12
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q LOSS MUTATED        4      2      4
  13Q LOSS WILD-TYPE     23     32     15
D56V2, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1                4                 23
  CLUS_2                2                 32
  CLUS_3                4                 15
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  13Q LOSS MUTATED        5      1      0      1
  13Q LOSS WILD-TYPE     16     11     12      9
D56V3, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1                5                 16
  CLUS_2                1                 11
  CLUS_3                0                 12
  CLUS_4                1                  9
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q LOSS MUTATED        1      5      1
  13Q LOSS WILD-TYPE      4     17     27
D56V4, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1                1                  4
  CLUS_2                5                 17
  CLUS_3                1                 27
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q LOSS MUTATED        7      1      0
  13Q LOSS WILD-TYPE     22     10     18
D56V5, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1                7                 22
  CLUS_2                1                 10
  CLUS_3                0                 18
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q LOSS MUTATED        0      1      7
  13Q LOSS WILD-TYPE     11     19     20
D56V6, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1                0                 11
  CLUS_2                1                 19
  CLUS_3                7                 20
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q LOSS MUTATED        7      1      0
  13Q LOSS WILD-TYPE     18      9     23
D56V7, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1                7                 18
  CLUS_2                1                  9
  CLUS_3                0                 23
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q LOSS MUTATED        0      7      1
  13Q LOSS WILD-TYPE     12     19     19
D56V8, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1                0                 12
  CLUS_2                7                 19
  CLUS_3                1                 19

Clustering(57) Variable = 14Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q LOSS MUTATED        1      2      1
  14Q LOSS WILD-TYPE     19     40     18
D57V1, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1                1                 19
  CLUS_2                2                 40
  CLUS_3                1                 18
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q LOSS MUTATED        1      0      3
  14Q LOSS WILD-TYPE     26     34     16
D57V2, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1                1                 26
  CLUS_2                0                 34
  CLUS_3                3                 16
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  14Q LOSS MUTATED        1      0      1      0
  14Q LOSS WILD-TYPE     20     12     11     10
D57V3, multiclass
[1] "Remove cluster labels:" "14Q LOSS MUTATED"      
clus
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
                 2                 53 
        TCGA-F2-6879         TCGA-F2-7273         TCGA-F2-7276 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-F2-A44G         TCGA-F2-A44H         TCGA-FB-A4P5 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-FB-A545         TCGA-H6-8124         TCGA-H6-A45N 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-HV-A5A3         TCGA-HV-A5A4         TCGA-HV-A5A5 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-HZ-7918         TCGA-HZ-7919         TCGA-HZ-7920 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-HZ-7922         TCGA-HZ-7923         TCGA-HZ-7924 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-HZ-7925         TCGA-HZ-7926         TCGA-HZ-8001 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-HZ-8002         TCGA-HZ-8003         TCGA-HZ-8315 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-HZ-8317         TCGA-HZ-8519         TCGA-HZ-8636 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-HZ-8637         TCGA-HZ-8638         TCGA-HZ-A49G 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-HZ-A49H         TCGA-HZ-A49I         TCGA-HZ-A4BH 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-HZ-A4BK         TCGA-IB-7644         TCGA-IB-7645 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-IB-7646         TCGA-IB-7649         TCGA-IB-7651 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-IB-7652         TCGA-IB-7654         TCGA-IB-7885 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-IB-7886         TCGA-IB-7887         TCGA-IB-7888 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-IB-7889         TCGA-IB-7890         TCGA-IB-7891 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-IB-7893         TCGA-IB-7897         TCGA-IB-8126 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-IB-8127         TCGA-M8-A5N4 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q LOSS MUTATED        0      1      1
  14Q LOSS WILD-TYPE      5     21     27
D57V4, multiclass
[1] "Remove cluster labels:" "14Q LOSS MUTATED"      
clus
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
                 2                 53 
        TCGA-F2-6879         TCGA-F2-7273         TCGA-F2-7276 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-F2-A44G         TCGA-F2-A44H         TCGA-FB-A4P5 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-FB-A545         TCGA-H6-8124         TCGA-H6-A45N 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-HV-A5A3         TCGA-HV-A5A4         TCGA-HV-A5A5 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-HZ-7918         TCGA-HZ-7919         TCGA-HZ-7920 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-HZ-7922         TCGA-HZ-7923         TCGA-HZ-7924 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-HZ-7925         TCGA-HZ-7926         TCGA-HZ-8001 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-HZ-8002         TCGA-HZ-8003         TCGA-HZ-8315 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-HZ-8317         TCGA-HZ-8519         TCGA-HZ-8636 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-HZ-8637         TCGA-HZ-8638         TCGA-HZ-A49G 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-HZ-A49H         TCGA-HZ-A49I         TCGA-HZ-A4BH 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-HZ-A4BK         TCGA-IB-7644         TCGA-IB-7645 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-IB-7646         TCGA-IB-7649         TCGA-IB-7651 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-IB-7652         TCGA-IB-7654         TCGA-IB-7885 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-IB-7886         TCGA-IB-7887         TCGA-IB-7888 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-IB-7889         TCGA-IB-7890         TCGA-IB-7891 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-IB-7893         TCGA-IB-7897         TCGA-IB-8126 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-IB-8127         TCGA-M8-A5N4 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q LOSS MUTATED        2      0      1
  14Q LOSS WILD-TYPE     27     11     17
D57V5, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1                2                 27
  CLUS_2                0                 11
  CLUS_3                1                 17
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q LOSS MUTATED        1      0      2
  14Q LOSS WILD-TYPE     10     20     25
D57V6, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1                1                 10
  CLUS_2                0                 20
  CLUS_3                2                 25
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q LOSS MUTATED        2      0      1
  14Q LOSS WILD-TYPE     23     10     22
D57V7, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1                2                 23
  CLUS_2                0                 10
  CLUS_3                1                 22
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q LOSS MUTATED        1      2      0
  14Q LOSS WILD-TYPE     11     24     20
D57V8, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1                1                 11
  CLUS_2                2                 24
  CLUS_3                0                 20

Clustering(58) Variable = 15Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q LOSS MUTATED        6      1      4
  15Q LOSS WILD-TYPE     14     41     15
D58V1, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1                6                 14
  CLUS_2                1                 41
  CLUS_3                4                 15
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q LOSS MUTATED        9      0      2
  15Q LOSS WILD-TYPE     18     34     17
D58V2, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1                9                 18
  CLUS_2                0                 34
  CLUS_3                2                 17
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  15Q LOSS MUTATED        9      0      0      1
  15Q LOSS WILD-TYPE     12     12     12      9
D58V3, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1                9                 12
  CLUS_2                0                 12
  CLUS_3                0                 12
  CLUS_4                1                  9
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q LOSS MUTATED        1      9      0
  15Q LOSS WILD-TYPE      4     13     28
D58V4, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1                1                  4
  CLUS_2                9                 13
  CLUS_3                0                 28
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q LOSS MUTATED       10      0      0
  15Q LOSS WILD-TYPE     19     11     18
D58V5, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1               10                 19
  CLUS_2                0                 11
  CLUS_3                0                 18
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q LOSS MUTATED        0      0     10
  15Q LOSS WILD-TYPE     11     20     17
D58V6, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1                0                 11
  CLUS_2                0                 20
  CLUS_3               10                 17
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q LOSS MUTATED       10      0      0
  15Q LOSS WILD-TYPE     15     10     23
D58V7, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1               10                 15
  CLUS_2                0                 10
  CLUS_3                0                 23
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q LOSS MUTATED        0     10      0
  15Q LOSS WILD-TYPE     12     16     20
D58V8, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1                0                 12
  CLUS_2               10                 16
  CLUS_3                0                 20

Clustering(59) Variable = 17P LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P LOSS MUTATED       14      4     15
  17P LOSS WILD-TYPE      6     38      4
D59V1, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1               14                  6
  CLUS_2                4                 38
  CLUS_3               15                  4
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P LOSS MUTATED       23      1      9
  17P LOSS WILD-TYPE      4     33     10
D59V2, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1               23                  4
  CLUS_2                1                 33
  CLUS_3                9                 10
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17P LOSS MUTATED       14      3      1      2
  17P LOSS WILD-TYPE      7      9     11      8
D59V3, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1               14                  7
  CLUS_2                3                  9
  CLUS_3                1                 11
  CLUS_4                2                  8
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P LOSS MUTATED        1     15      4
  17P LOSS WILD-TYPE      4      7     24
D59V4, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1                1                  4
  CLUS_2               15                  7
  CLUS_3                4                 24
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P LOSS MUTATED       18      2      2
  17P LOSS WILD-TYPE     11      9     16
D59V5, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1               18                 11
  CLUS_2                2                  9
  CLUS_3                2                 16
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P LOSS MUTATED        1      4     17
  17P LOSS WILD-TYPE     10     16     10
D59V6, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1                1                 10
  CLUS_2                4                 16
  CLUS_3               17                 10
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P LOSS MUTATED       17      3      2
  17P LOSS WILD-TYPE      8      7     21
D59V7, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1               17                  8
  CLUS_2                3                  7
  CLUS_3                2                 21
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P LOSS MUTATED        1     17      4
  17P LOSS WILD-TYPE     11      9     16
D59V8, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1                1                 11
  CLUS_2               17                  9
  CLUS_3                4                 16

Clustering(60) Variable = 17Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q LOSS MUTATED        3      1      7
  17Q LOSS WILD-TYPE     17     41     12
D60V1, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1                3                 17
  CLUS_2                1                 41
  CLUS_3                7                 12
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q LOSS MUTATED        7      1      3
  17Q LOSS WILD-TYPE     20     33     16
D60V2, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1                7                 20
  CLUS_2                1                 33
  CLUS_3                3                 16
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17Q LOSS MUTATED        5      1      1      0
  17Q LOSS WILD-TYPE     16     11     11     10
D60V3, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1                5                 16
  CLUS_2                1                 11
  CLUS_3                1                 11
  CLUS_4                0                 10
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q LOSS MUTATED        1      4      2
  17Q LOSS WILD-TYPE      4     18     26
D60V4, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1                1                  4
  CLUS_2                4                 18
  CLUS_3                2                 26
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q LOSS MUTATED        6      1      1
  17Q LOSS WILD-TYPE     23     10     17
D60V5, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1                6                 23
  CLUS_2                1                 10
  CLUS_3                1                 17
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q LOSS MUTATED        1      2      5
  17Q LOSS WILD-TYPE     10     18     22
D60V6, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1                1                 10
  CLUS_2                2                 18
  CLUS_3                5                 22
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q LOSS MUTATED        5      2      1
  17Q LOSS WILD-TYPE     20      8     22
D60V7, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1                5                 20
  CLUS_2                2                  8
  CLUS_3                1                 22
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q LOSS MUTATED        1      5      2
  17Q LOSS WILD-TYPE     11     21     18
D60V8, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1                1                 11
  CLUS_2                5                 21
  CLUS_3                2                 18

Clustering(61) Variable = 18P LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P LOSS MUTATED        5     16      8
  18P LOSS WILD-TYPE     15     26     11
D61V1, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1                5                 15
  CLUS_2               16                 26
  CLUS_3                8                 11
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P LOSS MUTATED        9      9     11
  18P LOSS WILD-TYPE     18     25      8
D61V2, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1                9                 18
  CLUS_2                9                 25
  CLUS_3               11                  8
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18P LOSS MUTATED        6      6      5      3
  18P LOSS WILD-TYPE     15      6      7      7
D61V3, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1                6                 15
  CLUS_2                6                  6
  CLUS_3                5                  7
  CLUS_4                3                  7
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P LOSS MUTATED        2      7     11
  18P LOSS WILD-TYPE      3     15     17
D61V4, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1                2                  3
  CLUS_2                7                 15
  CLUS_3               11                 17
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P LOSS MUTATED        9      4      7
  18P LOSS WILD-TYPE     20      7     11
D61V5, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1                9                 20
  CLUS_2                4                  7
  CLUS_3                7                 11
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P LOSS MUTATED        4      7      9
  18P LOSS WILD-TYPE      7     13     18
D61V6, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1                4                  7
  CLUS_2                7                 13
  CLUS_3                9                 18
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P LOSS MUTATED        8      2     10
  18P LOSS WILD-TYPE     17      8     13
D61V7, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1                8                 17
  CLUS_2                2                  8
  CLUS_3               10                 13
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P LOSS MUTATED        5      8      7
  18P LOSS WILD-TYPE      7     18     13
D61V8, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1                5                  7
  CLUS_2                8                 18
  CLUS_3                7                 13

Clustering(62) Variable = 18Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q LOSS MUTATED       17     17     10
  18Q LOSS WILD-TYPE      3     25      9
D62V1, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1               17                  3
  CLUS_2               17                 25
  CLUS_3               10                  9
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q LOSS MUTATED       20     11     13
  18Q LOSS WILD-TYPE      7     23      6
D62V2, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1               20                  7
  CLUS_2               11                 23
  CLUS_3               13                  6
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18Q LOSS MUTATED       15      8      5      4
  18Q LOSS WILD-TYPE      6      4      7      6
D62V3, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1               15                  6
  CLUS_2                8                  4
  CLUS_3                5                  7
  CLUS_4                4                  6
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q LOSS MUTATED        2     16     14
  18Q LOSS WILD-TYPE      3      6     14
D62V4, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1                2                  3
  CLUS_2               16                  6
  CLUS_3               14                 14
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q LOSS MUTATED       19      6      7
  18Q LOSS WILD-TYPE     10      5     11
D62V5, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1               19                 10
  CLUS_2                6                  5
  CLUS_3                7                 11
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q LOSS MUTATED        4      9     19
  18Q LOSS WILD-TYPE      7     11      8
D62V6, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1                4                  7
  CLUS_2                9                 11
  CLUS_3               19                  8
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q LOSS MUTATED       18      3     11
  18Q LOSS WILD-TYPE      7      7     12
D62V7, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1               18                  7
  CLUS_2                3                  7
  CLUS_3               11                 12
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q LOSS MUTATED        5     18      9
  18Q LOSS WILD-TYPE      7      8     11
D62V8, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1                5                  7
  CLUS_2               18                  8
  CLUS_3                9                 11

Clustering(63) Variable = 19P LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P LOSS MUTATED        3      1      3
  19P LOSS WILD-TYPE     17     41     16
D63V1, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1                3                 17
  CLUS_2                1                 41
  CLUS_3                3                 16
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P LOSS MUTATED        4      1      2
  19P LOSS WILD-TYPE     23     33     17
D63V2, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1                4                 23
  CLUS_2                1                 33
  CLUS_3                2                 17
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19P LOSS MUTATED        5      0      0      1
  19P LOSS WILD-TYPE     16     12     12      9
D63V3, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1                5                 16
  CLUS_2                0                 12
  CLUS_3                0                 12
  CLUS_4                1                  9
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P LOSS MUTATED        0      6      0
  19P LOSS WILD-TYPE      5     16     28
D63V4, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1                0                  5
  CLUS_2                6                 16
  CLUS_3                0                 28
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P LOSS MUTATED        7      0      0
  19P LOSS WILD-TYPE     22     11     18
D63V5, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1                7                 22
  CLUS_2                0                 11
  CLUS_3                0                 18
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P LOSS MUTATED        0      1      6
  19P LOSS WILD-TYPE     11     19     21
D63V6, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1                0                 11
  CLUS_2                1                 19
  CLUS_3                6                 21
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P LOSS MUTATED        6      1      0
  19P LOSS WILD-TYPE     19      9     23
D63V7, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1                6                 19
  CLUS_2                1                  9
  CLUS_3                0                 23
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P LOSS MUTATED        0      6      1
  19P LOSS WILD-TYPE     12     20     19
D63V8, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1                0                 12
  CLUS_2                6                 20
  CLUS_3                1                 19

Clustering(64) Variable = 19Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q LOSS MUTATED        2      1      2
  19Q LOSS WILD-TYPE     18     41     17
D64V1, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1                2                 18
  CLUS_2                1                 41
  CLUS_3                2                 17
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q LOSS MUTATED        2      1      2
  19Q LOSS WILD-TYPE     25     33     17
D64V2, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1                2                 25
  CLUS_2                1                 33
  CLUS_3                2                 17
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19Q LOSS MUTATED        3      0      0      1
  19Q LOSS WILD-TYPE     18     12     12      9
D64V3, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1                3                 18
  CLUS_2                0                 12
  CLUS_3                0                 12
  CLUS_4                1                  9
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q LOSS MUTATED        0      4      0
  19Q LOSS WILD-TYPE      5     18     28
D64V4, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1                0                  5
  CLUS_2                4                 18
  CLUS_3                0                 28
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q LOSS MUTATED        5      0      0
  19Q LOSS WILD-TYPE     24     11     18
D64V5, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1                5                 24
  CLUS_2                0                 11
  CLUS_3                0                 18
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q LOSS MUTATED        0      0      5
  19Q LOSS WILD-TYPE     11     20     22
D64V6, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1                0                 11
  CLUS_2                0                 20
  CLUS_3                5                 22
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q LOSS MUTATED        5      0      0
  19Q LOSS WILD-TYPE     20     10     23
D64V7, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1                5                 20
  CLUS_2                0                 10
  CLUS_3                0                 23
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q LOSS MUTATED        0      5      0
  19Q LOSS WILD-TYPE     12     21     20
D64V8, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1                0                 12
  CLUS_2                5                 21
  CLUS_3                0                 20

Clustering(65) Variable = 20P LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P LOSS MUTATED        3      2      2
  20P LOSS WILD-TYPE     17     40     17
D65V1, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1                3                 17
  CLUS_2                2                 40
  CLUS_3                2                 17
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P LOSS MUTATED        5      1      1
  20P LOSS WILD-TYPE     22     33     18
D65V2, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1                5                 22
  CLUS_2                1                 33
  CLUS_3                1                 18
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20P LOSS MUTATED        3      1      0      1
  20P LOSS WILD-TYPE     18     11     12      9
D65V3, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1                3                 18
  CLUS_2                1                 11
  CLUS_3                0                 12
  CLUS_4                1                  9
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P LOSS MUTATED        1      3      1
  20P LOSS WILD-TYPE      4     19     27
D65V4, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1                1                  4
  CLUS_2                3                 19
  CLUS_3                1                 27
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P LOSS MUTATED        4      1      0
  20P LOSS WILD-TYPE     25     10     18
D65V5, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1                4                 25
  CLUS_2                1                 10
  CLUS_3                0                 18
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P LOSS MUTATED        0      1      4
  20P LOSS WILD-TYPE     11     19     23
D65V6, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1                0                 11
  CLUS_2                1                 19
  CLUS_3                4                 23
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P LOSS MUTATED        4      0      1
  20P LOSS WILD-TYPE     21     10     22
D65V7, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1                4                 21
  CLUS_2                0                 10
  CLUS_3                1                 22
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P LOSS MUTATED        0      4      1
  20P LOSS WILD-TYPE     12     22     19
D65V8, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1                0                 12
  CLUS_2                4                 22
  CLUS_3                1                 19

Clustering(66) Variable = 21Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q LOSS MUTATED       11      4     13
  21Q LOSS WILD-TYPE      9     38      6
D66V1, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1               11                  9
  CLUS_2                4                 38
  CLUS_3               13                  6
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q LOSS MUTATED       14      5      8
  21Q LOSS WILD-TYPE     13     29     11
D66V2, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1               14                 13
  CLUS_2                5                 29
  CLUS_3                8                 11
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  21Q LOSS MUTATED       11      3      2      2
  21Q LOSS WILD-TYPE     10      9     10      8
D66V3, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1               11                 10
  CLUS_2                3                  9
  CLUS_3                2                 10
  CLUS_4                2                  8
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q LOSS MUTATED        1     12      5
  21Q LOSS WILD-TYPE      4     10     23
D66V4, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1                1                  4
  CLUS_2               12                 10
  CLUS_3                5                 23
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q LOSS MUTATED       14      3      2
  21Q LOSS WILD-TYPE     15      8     16
D66V5, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1               14                 15
  CLUS_2                3                  8
  CLUS_3                2                 16
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q LOSS MUTATED        2      5     12
  21Q LOSS WILD-TYPE      9     15     15
D66V6, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1                2                  9
  CLUS_2                5                 15
  CLUS_3               12                 15
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q LOSS MUTATED       12      3      4
  21Q LOSS WILD-TYPE     13      7     19
D66V7, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1               12                 13
  CLUS_2                3                  7
  CLUS_3                4                 19
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q LOSS MUTATED        2     12      5
  21Q LOSS WILD-TYPE     10     14     15
D66V8, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1                2                 10
  CLUS_2               12                 14
  CLUS_3                5                 15

Clustering(67) Variable = 22Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q LOSS MUTATED        5      3      8
  22Q LOSS WILD-TYPE     15     39     11
D67V1, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1                5                 15
  CLUS_2                3                 39
  CLUS_3                8                 11
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q LOSS MUTATED        7      3      6
  22Q LOSS WILD-TYPE     20     31     13
D67V2, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1                7                 20
  CLUS_2                3                 31
  CLUS_3                6                 13
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  22Q LOSS MUTATED        6      2      1      0
  22Q LOSS WILD-TYPE     15     10     11     10
D67V3, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1                6                 15
  CLUS_2                2                 10
  CLUS_3                1                 11
  CLUS_4                0                 10
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q LOSS MUTATED        1      5      3
  22Q LOSS WILD-TYPE      4     17     25
D67V4, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1                1                  4
  CLUS_2                5                 17
  CLUS_3                3                 25
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q LOSS MUTATED        6      2      1
  22Q LOSS WILD-TYPE     23      9     17
D67V5, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1                6                 23
  CLUS_2                2                  9
  CLUS_3                1                 17
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q LOSS MUTATED        1      2      6
  22Q LOSS WILD-TYPE     10     18     21
D67V6, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1                1                 10
  CLUS_2                2                 18
  CLUS_3                6                 21
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q LOSS MUTATED        6      0      3
  22Q LOSS WILD-TYPE     19     10     20
D67V7, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1                6                 19
  CLUS_2                0                 10
  CLUS_3                3                 20
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q LOSS MUTATED        1      6      2
  22Q LOSS WILD-TYPE     11     20     18
D67V8, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1                1                 11
  CLUS_2                6                 20
  CLUS_3                2                 18

Clustering(68) Variable = XQ LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ LOSS MUTATED        1      0      4
  XQ LOSS WILD-TYPE     19     42     15
D68V1, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1               1                19
  CLUS_2               0                42
  CLUS_3               4                15
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ LOSS MUTATED        3      1      1
  XQ LOSS WILD-TYPE     24     33     18
D68V2, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1               3                24
  CLUS_2               1                33
  CLUS_3               1                18
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XQ LOSS MUTATED        1      2      0      0
  XQ LOSS WILD-TYPE     20     10     12     10
D68V3, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1               1                20
  CLUS_2               2                10
  CLUS_3               0                12
  CLUS_4               0                10
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ LOSS MUTATED        0      1      2
  XQ LOSS WILD-TYPE      5     21     26
D68V4, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1               0                 5
  CLUS_2               1                21
  CLUS_3               2                26
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ LOSS MUTATED        1      2      0
  XQ LOSS WILD-TYPE     28      9     18
D68V5, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1               1                28
  CLUS_2               2                 9
  CLUS_3               0                18
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ LOSS MUTATED        0      2      1
  XQ LOSS WILD-TYPE     11     18     26
D68V6, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1               0                11
  CLUS_2               2                18
  CLUS_3               1                26
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ LOSS MUTATED        1      2      0
  XQ LOSS WILD-TYPE     24      8     23
D68V7, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1               1                24
  CLUS_2               2                 8
  CLUS_3               0                23
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ LOSS MUTATED        0      1      2
  XQ LOSS WILD-TYPE     12     25     18
D68V8, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1               0                12
  CLUS_2               1                25
  CLUS_3               2                18
> q(save="no")
