Correlation between gene mutation status and molecular subtypes
Overview
Introduction

This pipeline computes the correlation between significantly recurrent gene mutations and molecular subtypes.

Summary

Testing the association between mutation status of 106 genes and 8 molecular subtypes across 57 patients, no significant finding detected with P value < 0.05 and Q value < 0.25.

  • No gene mutations related to molecuar subtypes.

Results
Overview of the results

Table 1.  Get Full Table Overview of the association between mutation status of 106 genes and 8 molecular subtypes. Shown in the table are P values (Q values). Thresholded by P value < 0.05 and Q value < 0.25, no significant finding detected.

Clinical
Features 		CN
CNMF 		METHLYATION
CNMF 		MRNASEQ
CNMF 		MRNASEQ
CHIERARCHICAL 		MIRSEQ
CNMF 		MIRSEQ
CHIERARCHICAL 		MIRSEQ
MATURE
CNMF 		MIRSEQ
MATURE
CHIERARCHICAL
nMutated (%) nWild-Type Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test
C15ORF24 6 (11%) 51 0.238
(1.00) 		0.748
(1.00) 		0.622
(1.00) 		0.248
(1.00) 		0.621
(1.00) 		0.848
(1.00) 		0.214
(1.00) 		0.261
(1.00)
IRS1 5 (9%) 52 0.336
(1.00) 		0.506
(1.00) 		0.741
(1.00) 		1
(1.00) 		0.833
(1.00) 		1
(1.00) 		0.711
(1.00) 		1
(1.00)
FYN 5 (9%) 52 0.126
(1.00) 		0.244
(1.00) 		0.0383
(1.00) 		0.0972
(1.00) 		0.164
(1.00) 		0.451
(1.00) 		0.0919
(1.00) 		0.0693
(1.00)
FADS2 5 (9%) 52 1
(1.00) 		0.712
(1.00) 		0.412
(1.00) 		1
(1.00) 		0.215
(1.00) 		0.0964
(1.00) 		0.711
(1.00) 		0.0239
(1.00)
C14ORF49 9 (16%) 48 0.31
(1.00) 		0.117
(1.00) 		0.259
(1.00) 		0.233
(1.00) 		0.149
(1.00) 		0.191
(1.00) 		0.441
(1.00) 		0.239
(1.00)
FGF10 6 (11%) 51 1
(1.00) 		0.103
(1.00) 		0.622
(1.00) 		0.423
(1.00) 		0.155
(1.00) 		0.848
(1.00) 		0.0911
(1.00) 		0.261
(1.00)
CEL 4 (7%) 53 0.66
(1.00) 		1
(1.00) 		0.0397
(1.00) 		0.743
(1.00) 		0.112
(1.00) 		0.812
(1.00) 		0.391
(1.00) 		0.29
(1.00)
CCR3 5 (9%) 52 0.7
(1.00) 		0.712
(1.00) 		0.738
(1.00) 		1
(1.00) 		0.582
(1.00) 		0.694
(1.00) 		0.831
(1.00) 		0.832
(1.00)
OR10A2 6 (11%) 51 0.339
(1.00) 		0.08
(1.00) 		0.0383
(1.00) 		0.132
(1.00) 		0.057
(1.00) 		0.0482
(1.00) 		0.272
(1.00) 		0.109
(1.00)
OR10A7 9 (16%) 48 0.718
(1.00) 		0.342
(1.00) 		0.0971
(1.00) 		0.415
(1.00) 		0.396
(1.00) 		0.786
(1.00) 		0.622
(1.00) 		0.49
(1.00)
POP5 5 (9%) 52 0.126
(1.00) 		0.155
(1.00) 		0.0199
(1.00) 		0.132
(1.00) 		0.029
(1.00) 		0.451
(1.00) 		0.0919
(1.00) 		0.0693
(1.00)
SRP14 7 (12%) 50 1
(1.00) 		1
(1.00) 		0.932
(1.00) 		0.514
(1.00) 		0.758
(1.00) 		0.492
(1.00) 		0.204
(1.00) 		0.426
(1.00)
WRN 5 (9%) 52 0.329
(1.00) 		0.845
(1.00) 		0.914
(1.00) 		0.611
(1.00) 		0.691
(1.00) 		1
(1.00) 		1
(1.00) 		1
(1.00)
TMEM40 9 (16%) 48 0.691
(1.00) 		0.342
(1.00) 		0.567
(1.00) 		1
(1.00) 		0.561
(1.00) 		0.786
(1.00) 		0.317
(1.00) 		1
(1.00)
KRAS 33 (58%) 24 0.0479
(1.00) 		0.000979
(0.82) 		0.0506
(1.00) 		0.0158
(1.00) 		0.0805
(1.00) 		0.133
(1.00) 		0.207
(1.00) 		0.286
(1.00)
TP53 37 (65%) 20 0.0713
(1.00) 		0.00522
(1.00) 		0.125
(1.00) 		0.0992
(1.00) 		0.419
(1.00) 		0.389
(1.00) 		0.302
(1.00) 		0.497
(1.00)
QRICH1 7 (12%) 50 0.0687
(1.00) 		0.123
(1.00) 		0.386
(1.00) 		0.0845
(1.00) 		0.426
(1.00) 		0.12
(1.00) 		0.00445
(1.00) 		0.11
(1.00)
ST6GALNAC5 6 (11%) 51 1
(1.00) 		0.356
(1.00) 		0.655
(1.00) 		0.82
(1.00) 		1
(1.00) 		1
(1.00) 		0.721
(1.00) 		1
(1.00)
TNFSF9 6 (11%) 51 0.238
(1.00) 		0.748
(1.00) 		0.169
(1.00) 		0.135
(1.00) 		0.451
(1.00) 		0.848
(1.00) 		0.112
(1.00) 		0.851
(1.00)
CDKN2A 13 (23%) 44 0.413
(1.00) 		0.11
(1.00) 		0.599
(1.00) 		0.876
(1.00) 		0.213
(1.00) 		0.82
(1.00) 		0.906
(1.00) 		0.753
(1.00)
SEH1L 8 (14%) 49 0.405
(1.00) 		0.388
(1.00) 		0.589
(1.00) 		0.608
(1.00) 		0.689
(1.00) 		0.0889
(1.00) 		0.0339
(1.00) 		0.104
(1.00)
SCD 8 (14%) 49 0.405
(1.00) 		0.388
(1.00) 		0.093
(1.00) 		1
(1.00) 		0.357
(1.00) 		0.77
(1.00) 		0.6
(1.00) 		0.275
(1.00)
TMC4 9 (16%) 48 0.889
(1.00) 		0.214
(1.00) 		0.39
(1.00) 		0.153
(1.00) 		0.136
(1.00) 		0.516
(1.00) 		0.676
(1.00) 		0.462
(1.00)
MED15 9 (16%) 48 1
(1.00) 		0.816
(1.00) 		0.665
(1.00) 		0.375
(1.00) 		0.632
(1.00) 		1
(1.00) 		0.492
(1.00) 		1
(1.00)
TNFRSF9 6 (11%) 51 1
(1.00) 		0.549
(1.00) 		0.595
(1.00) 		0.611
(1.00) 		0.527
(1.00) 		0.436
(1.00) 		0.857
(1.00) 		0.63
(1.00)
BRDT 8 (14%) 49 0.405
(1.00) 		0.388
(1.00) 		0.479
(1.00) 		0.836
(1.00) 		0.0503
(1.00) 		0.391
(1.00) 		0.467
(1.00) 		0.522
(1.00)
CXXC4 6 (11%) 51 0.7
(1.00) 		0.748
(1.00) 		0.932
(1.00) 		0.645
(1.00) 		0.855
(1.00) 		0.521
(1.00) 		1
(1.00) 		0.541
(1.00)
MBD3 6 (11%) 51 1
(1.00) 		0.866
(1.00) 		0.689
(1.00) 		0.771
(1.00) 		0.451
(1.00) 		1
(1.00) 		1
(1.00) 		1
(1.00)
TULP1 6 (11%) 51 0.238
(1.00) 		0.549
(1.00) 		0.227
(1.00) 		0.423
(1.00) 		0.057
(1.00) 		0.115
(1.00) 		0.272
(1.00) 		0.00854
(1.00)
PHF13 4 (7%) 53 0.66
(1.00) 		0.0816
(1.00) 		0.236
(1.00) 		0.118
(1.00) 		0.323
(1.00) 		0.499
(1.00) 		0.0922
(1.00) 		0.657
(1.00)
BHLHB9 5 (9%) 52 0.255
(1.00) 		0.0507
(1.00) 		0.118
(1.00) 		0.0485
(1.00) 		0.0892
(1.00) 		0.073
(1.00) 		0.0353
(1.00) 		0.0364
(1.00)
PRDM8 6 (11%) 51 0.238
(1.00) 		0.748
(1.00) 		0.914
(1.00) 		1
(1.00) 		0.235
(1.00) 		0.0806
(1.00) 		0.214
(1.00) 		0.0729
(1.00)
SMAD4 10 (18%) 47 0.113
(1.00) 		0.0402
(1.00) 		0.235
(1.00) 		0.182
(1.00) 		0.0725
(1.00) 		0.335
(1.00) 		0.134
(1.00) 		0.209
(1.00)
C14ORF43 7 (12%) 50 0.655
(1.00) 		0.145
(1.00) 		0.355
(1.00) 		0.584
(1.00) 		1
(1.00) 		1
(1.00) 		0.578
(1.00) 		0.658
(1.00)
MEPCE 7 (12%) 50 0.147
(1.00) 		0.592
(1.00) 		0.479
(1.00) 		0.836
(1.00) 		0.233
(1.00) 		0.0603
(1.00) 		0.138
(1.00) 		0.0871
(1.00)
HVCN1 4 (7%) 53 0.66
(1.00) 		1
(1.00) 		0.0397
(1.00) 		0.743
(1.00) 		0.112
(1.00) 		0.0789
(1.00) 		0.391
(1.00) 		0.0155
(1.00)
FOXP2 8 (14%) 49 0.782
(1.00) 		0.625
(1.00) 		0.479
(1.00) 		0.836
(1.00) 		0.0503
(1.00) 		0.192
(1.00) 		0.275
(1.00) 		0.316
(1.00)
GRIN1 5 (9%) 52 0.41
(1.00) 		0.712
(1.00) 		0.0932
(1.00) 		1
(1.00) 		0.215
(1.00) 		1
(1.00) 		0.485
(1.00) 		0.247
(1.00)
MAGEA10 4 (7%) 53 0.164
(1.00) 		0.349
(1.00) 		0.0843
(1.00) 		0.189
(1.00) 		0.0728
(1.00) 		0.499
(1.00) 		0.17
(1.00) 		0.0591
(1.00)
C16ORF79 4 (7%) 53 1
(1.00) 		1
(1.00) 		1
(1.00) 		1
(1.00) 		1
(1.00) 		1
(1.00) 		1
(1.00) 		1
(1.00)
ERF 6 (11%) 51 0.339
(1.00) 		0.182
(1.00) 		0.138
(1.00) 		0.611
(1.00) 		0.0759
(1.00) 		0.154
(1.00) 		0.272
(1.00) 		0.261
(1.00)
IFNGR2 4 (7%) 53 0.66
(1.00) 		0.272
(1.00) 		0.209
(1.00) 		0.511
(1.00) 		0.66
(1.00) 		0.499
(1.00) 		0.663
(1.00) 		0.657
(1.00)
OLIG3 5 (9%) 52 0.7
(1.00) 		0.593
(1.00) 		0.181
(1.00) 		0.0191
(1.00) 		0.0892
(1.00) 		0.367
(1.00) 		0.114
(1.00) 		0.313
(1.00)
NDEL1 4 (7%) 53 0.66
(1.00) 		1
(1.00) 		0.0397
(1.00) 		0.743
(1.00) 		0.112
(1.00) 		0.812
(1.00) 		0.391
(1.00) 		0.29
(1.00)
EGR1 8 (14%) 49 0.691
(1.00) 		0.705
(1.00) 		0.817
(1.00) 		0.82
(1.00) 		0.462
(1.00) 		0.872
(1.00) 		0.315
(1.00) 		0.881
(1.00)
CDH3 4 (7%) 53 0.799
(1.00) 		0.272
(1.00) 		0.0222
(1.00) 		0.431
(1.00) 		0.0511
(1.00) 		0.362
(1.00) 		0.391
(1.00) 		0.383
(1.00)
PCDHAC2 9 (16%) 48 0.272
(1.00) 		0.0367
(1.00) 		0.82
(1.00) 		0.329
(1.00) 		0.882
(1.00) 		1
(1.00) 		0.676
(1.00) 		1
(1.00)
ZFP36 4 (7%) 53 0.799
(1.00) 		0.349
(1.00) 		0.103
(1.00) 		0.431
(1.00) 		0.431
(1.00) 		0.362
(1.00) 		0.391
(1.00) 		0.383
(1.00)
NR4A3 5 (9%) 52 0.329
(1.00) 		0.0507
(1.00) 		0.855
(1.00) 		0.771
(1.00) 		1
(1.00) 		0.837
(1.00) 		1
(1.00) 		1
(1.00)
RAB11FIP5 5 (9%) 52 0.584
(1.00) 		0.244
(1.00) 		0.451
(1.00) 		0.743
(1.00) 		0.833
(1.00) 		1
(1.00) 		0.711
(1.00) 		1
(1.00)
OTUD4 7 (12%) 50 0.205
(1.00) 		1
(1.00) 		0.298
(1.00) 		1
(1.00) 		0.66
(1.00) 		1
(1.00) 		0.761
(1.00) 		0.658
(1.00)
PPARGC1B 7 (12%) 50 1
(1.00) 		0.592
(1.00) 		0.938
(1.00) 		0.707
(1.00) 		0.873
(1.00) 		0.492
(1.00) 		0.086
(1.00) 		0.658
(1.00)
PDZD2 9 (16%) 48 0.57
(1.00) 		0.462
(1.00) 		0.513
(1.00) 		0.534
(1.00) 		0.506
(1.00) 		0.191
(1.00) 		0.0688
(1.00) 		0.0558
(1.00)
NPNT 4 (7%) 53 0.336
(1.00) 		1
(1.00) 		0.738
(1.00) 		0.743
(1.00) 		0.66
(1.00) 		0.812
(1.00) 		1
(1.00) 		1
(1.00)
MED9 3 (5%) 54 0.282
(1.00) 		0.0131
(1.00) 		0.589
(1.00) 		1
(1.00) 		1
(1.00) 		1
(1.00)
BCL2L1 3 (5%) 54 0.795
(1.00) 		0.782
(1.00) 		0.767
(1.00) 		0.289
(1.00) 		0.589
(1.00) 		1
(1.00) 		0.582
(1.00) 		1
(1.00)
CPLX3 3 (5%) 54 0.414
(1.00) 		0.603
(1.00) 		0.203
(1.00) 		0.431
(1.00) 		0.0663
(1.00) 		0.112
(1.00) 		0.138
(1.00) 		0.129
(1.00)
IRX4 3 (5%) 54 0.795
(1.00) 		0.782
(1.00) 		0.243
(1.00) 		1
(1.00) 		0.304
(1.00) 		0.554
(1.00) 		0.786
(1.00) 		0.776
(1.00)
NFAT5 8 (14%) 49 0.782
(1.00) 		0.388
(1.00) 		0.567
(1.00) 		0.862
(1.00) 		0.783
(1.00) 		0.516
(1.00) 		0.886
(1.00) 		0.881
(1.00)
WASF3 5 (9%) 52 0.584
(1.00) 		0.244
(1.00) 		0.209
(1.00) 		0.511
(1.00) 		0.582
(1.00) 		0.694
(1.00) 		1
(1.00) 		0.832
(1.00)
ABCC2 6 (11%) 51 0.238
(1.00) 		0.182
(1.00) 		0.255
(1.00) 		0.423
(1.00) 		0.527
(1.00) 		0.154
(1.00) 		0.272
(1.00) 		0.261
(1.00)
ATP13A3 4 (7%) 53 0.53
(1.00) 		0.272
(1.00) 		1
(1.00) 		1
(1.00) 		1
(1.00) 		1
(1.00) 		0.827
(1.00) 		1
(1.00)
ARHGAP18 4 (7%) 53 0.414
(1.00) 		0.349
(1.00) 		0.071
(1.00) 		0.189
(1.00) 		0.0728
(1.00) 		0.362
(1.00) 		0.17
(1.00) 		0.165
(1.00)
CIR1 3 (5%) 54 1
(1.00) 		0.603
(1.00) 		0.188
(1.00) 		0.755
(1.00) 		0.582
(1.00) 		0.776
(1.00)
KIAA0020 4 (7%) 53 0.799
(1.00) 		0.272
(1.00) 		0.103
(1.00) 		0.431
(1.00) 		0.431
(1.00) 		1
(1.00) 		0.391
(1.00) 		0.657
(1.00)
ZNF608 6 (11%) 51 0.0687
(1.00) 		0.103
(1.00) 		0.622
(1.00) 		0.423
(1.00) 		0.155
(1.00) 		0.154
(1.00) 		0.0455
(1.00) 		0.0184
(1.00)
NEDD4L 6 (11%) 51 1
(1.00) 		0.466
(1.00) 		0.817
(1.00) 		0.82
(1.00) 		0.733
(1.00) 		0.36
(1.00) 		0.857
(1.00) 		0.317
(1.00)
THBS4 6 (11%) 51 0.339
(1.00) 		0.103
(1.00) 		0.138
(1.00) 		0.611
(1.00) 		0.527
(1.00) 		0.848
(1.00) 		0.214
(1.00) 		0.261
(1.00)
MMRN1 6 (11%) 51 1
(1.00) 		0.748
(1.00) 		0.914
(1.00) 		1
(1.00) 		0.733
(1.00) 		0.848
(1.00) 		0.626
(1.00) 		0.851
(1.00)
GPR25 3 (5%) 54 0.414
(1.00) 		0.603
(1.00) 		1
(1.00) 		1
(1.00) 		0.786
(1.00) 		0.112
(1.00) 		0.293
(1.00) 		0.129
(1.00)
SORBS2 6 (11%) 51 0.522
(1.00) 		0.0307
(1.00) 		1
(1.00) 		1
(1.00) 		1
(1.00) 		1
(1.00) 		1
(1.00) 		1
(1.00)
SULT1C3 3 (5%) 54 0.795
(1.00) 		0.102
(1.00) 		0.88
(1.00) 		0.667
(1.00) 		0.589
(1.00) 		1
(1.00) 		1
(1.00) 		1
(1.00)
ECSIT 4 (7%) 53 0.66
(1.00) 		1
(1.00) 		0.0397
(1.00) 		0.743
(1.00) 		0.112
(1.00) 		0.812
(1.00) 		0.391
(1.00) 		0.29
(1.00)
ZNF326 4 (7%) 53 0.799
(1.00) 		0.272
(1.00) 		0.243
(1.00) 		1
(1.00) 		0.66
(1.00) 		0.499
(1.00) 		0.663
(1.00) 		0.657
(1.00)
C15ORF52 3 (5%) 54 1
(1.00) 		0.603
(1.00) 		0.786
(1.00) 		0.554
(1.00) 		0.786
(1.00) 		0.776
(1.00)
SLC39A5 3 (5%) 54 0.795
(1.00) 		0.782
(1.00) 		1
(1.00) 		1
(1.00) 		0.786
(1.00) 		0.755
(1.00) 		0.582
(1.00) 		0.776
(1.00)
SLC24A1 4 (7%) 53 0.164
(1.00) 		0.349
(1.00) 		0.451
(1.00) 		0.743
(1.00) 		0.431
(1.00) 		0.113
(1.00) 		0.17
(1.00) 		0.165
(1.00)
PUM2 5 (9%) 52 0.41
(1.00) 		0.712
(1.00) 		0.638
(1.00) 		1
(1.00) 		0.833
(1.00) 		1
(1.00) 		0.312
(1.00) 		0.247
(1.00)
SYT2 5 (9%) 52 0.126
(1.00) 		0.0249
(1.00) 		0.15
(1.00) 		0.132
(1.00) 		0.029
(1.00) 		0.0425
(1.00) 		0.0919
(1.00) 		0.0693
(1.00)
SLITRK5 6 (11%) 51 0.238
(1.00) 		0.748
(1.00) 		0.255
(1.00) 		1
(1.00) 		0.527
(1.00) 		0.848
(1.00) 		0.214
(1.00) 		0.261
(1.00)
NAP1L3 3 (5%) 54 1
(1.00) 		0.782
(1.00) 		0.243
(1.00) 		1
(1.00) 		0.304
(1.00) 		0.554
(1.00) 		0.786
(1.00) 		0.776
(1.00)
PHF14 3 (5%) 54 0.795
(1.00) 		0.782
(1.00) 		1
(1.00) 		1
(1.00) 		0.786
(1.00) 		0.554
(1.00) 		0.786
(1.00) 		0.776
(1.00)
CCDC28B 4 (7%) 53 0.164
(1.00) 		0.349
(1.00) 		0.0142
(1.00) 		0.118
(1.00) 		0.112
(1.00) 		0.812
(1.00) 		0.17
(1.00) 		0.29
(1.00)
PDE12 3 (5%) 54 0.603
(1.00) 		0.786
(1.00) 		0.755
(1.00) 		0.786
(1.00) 		0.776
(1.00)
FLAD1 3 (5%) 54 0.414
(1.00) 		0.175
(1.00) 		0.103
(1.00) 		0.431
(1.00) 		0.117
(1.00) 		0.182
(1.00) 		0.138
(1.00) 		0.208
(1.00)
ENG 3 (5%) 54 0.414
(1.00) 		0.175
(1.00) 		0.103
(1.00) 		0.431
(1.00) 		0.117
(1.00) 		0.03
(1.00) 		0.293
(1.00) 		0.0392
(1.00)
PABPC1 4 (7%) 53 0.53
(1.00) 		0.556
(1.00) 		0.767
(1.00) 		1
(1.00) 		1
(1.00) 		1
(1.00) 		1
(1.00) 		1
(1.00)
ATG16L2 3 (5%) 54 1
(1.00) 		0.331
(1.00) 		0.243
(1.00) 		1
(1.00) 		0.304
(1.00) 		0.376
(1.00) 		0.786
(1.00) 		0.0796
(1.00)
LRCH1 7 (12%) 50 0.655
(1.00) 		0.451
(1.00) 		0.298
(1.00) 		1
(1.00) 		0.66
(1.00) 		0.655
(1.00) 		0.761
(1.00) 		0.226
(1.00)
PLCZ1 3 (5%) 54 1
(1.00) 		0.331
(1.00) 		0.243
(1.00) 		1
(1.00) 		0.304
(1.00) 		1
(1.00) 		0.786
(1.00) 		0.776
(1.00)
TAOK2 6 (11%) 51 1
(1.00) 		1
(1.00) 		1
(1.00) 		0.645
(1.00) 		1
(1.00) 		0.848
(1.00) 		0.112
(1.00) 		0.851
(1.00)
ZMIZ1 6 (11%) 51 0.149
(1.00) 		0.866
(1.00) 		0.554
(1.00) 		0.463
(1.00) 		0.855
(1.00) 		1
(1.00) 		0.332
(1.00) 		1
(1.00)
SYT15 6 (11%) 51 1
(1.00) 		0.0617
(1.00) 		0.817
(1.00) 		0.82
(1.00) 		1
(1.00) 		0.724
(1.00) 		0.857
(1.00) 		0.851
(1.00)
LRTM1 3 (5%) 54 0.414
(1.00) 		0.175
(1.00) 		0.00345
(1.00) 		0.289
(1.00) 		1
(1.00) 		0.376
(1.00) 		0.582
(1.00) 		0.392
(1.00)
TIMM50 4 (7%) 53 0.336
(1.00) 		0.556
(1.00) 		0.408
(1.00) 		1
(1.00) 		0.799
(1.00) 		0.812
(1.00) 		0.827
(1.00) 		1
(1.00)
CCNK 4 (7%) 53 0.66
(1.00) 		1
(1.00) 		0.296
(1.00) 		1
(1.00) 		0.66
(1.00) 		0.499
(1.00) 		0.663
(1.00) 		0.657
(1.00)
TTK 5 (9%) 52 0.126
(1.00) 		0.244
(1.00) 		0.595
(1.00) 		0.343
(1.00) 		0.833
(1.00) 		0.224
(1.00) 		0.0713
(1.00) 		0.247
(1.00)
TMEM175 4 (7%) 53 0.66
(1.00) 		0.349
(1.00) 		0.676
(1.00) 		0.743
(1.00) 		0.323
(1.00) 		0.0273
(1.00) 		0.17
(1.00) 		0.0323
(1.00)
CD93 5 (9%) 52 1
(1.00) 		0.00748
(1.00) 		0.554
(1.00) 		0.235
(1.00) 		0.483
(1.00) 		0.837
(1.00) 		0.384
(1.00) 		1
(1.00)
C19ORF55 4 (7%) 53 0.53
(1.00) 		0.0289
(1.00) 		0.88
(1.00) 		0.667
(1.00) 		0.541
(1.00) 		1
(1.00) 		0.827
(1.00) 		1
(1.00)
MRPL48 3 (5%) 54 1
(1.00) 		0.603
(1.00) 		1
(1.00) 		1
(1.00) 		0.786
(1.00) 		0.112
(1.00) 		0.041
(1.00) 		0.129
(1.00)
PVRL1 5 (9%) 52 0.41
(1.00) 		0.845
(1.00) 		0.0932
(1.00) 		1
(1.00) 		0.215
(1.00) 		0.451
(1.00) 		0.485
(1.00) 		0.478
(1.00)
ACIN1 3 (5%) 54 1
(1.00) 		0.331
(1.00) 		0.589
(1.00) 		0.755
(1.00) 		0.582
(1.00) 		0.776
(1.00)
MAML3 7 (12%) 50 0.879
(1.00) 		0.145
(1.00) 		0.5
(1.00) 		0.464
(1.00) 		0.325
(1.00) 		0.741
(1.00) 		1
(1.00) 		1
(1.00)
EDC4 5 (9%) 52 1
(1.00) 		0.712
(1.00) 		0.495
(1.00) 		0.667
(1.00) 		1
(1.00) 		1
(1.00) 		0.384
(1.00) 		1
(1.00)
SETD1A 3 (5%) 54 0.795
(1.00) 		1
(1.00) 		1
(1.00) 		1
(1.00) 		0.786
(1.00) 		1
(1.00) 		0.582
(1.00) 		0.776
(1.00)
'C15ORF24 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.238 (Fisher's exact test), Q value = 1

Table S1.  Gene #1: 'C15ORF24 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
C15ORF24 MUTATED 1 5 0
C15ORF24 WILD-TYPE 12 24 14
'C15ORF24 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.748 (Fisher's exact test), Q value = 1

Table S2.  Gene #1: 'C15ORF24 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
C15ORF24 MUTATED 1 3 2
C15ORF24 WILD-TYPE 17 21 12
'C15ORF24 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.622 (Fisher's exact test), Q value = 1

Table S3.  Gene #1: 'C15ORF24 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
C15ORF24 MUTATED 1 2 2 1
C15ORF24 WILD-TYPE 17 10 7 7
'C15ORF24 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.248 (Fisher's exact test), Q value = 1

Table S4.  Gene #1: 'C15ORF24 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
C15ORF24 MUTATED 1 1 4
C15ORF24 WILD-TYPE 3 17 21
'C15ORF24 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.621 (Fisher's exact test), Q value = 1

Table S5.  Gene #1: 'C15ORF24 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
C15ORF24 MUTATED 2 2 2
C15ORF24 WILD-TYPE 23 9 12
'C15ORF24 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.848 (Fisher's exact test), Q value = 1

Table S6.  Gene #1: 'C15ORF24 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
C15ORF24 MUTATED 1 3 2
C15ORF24 WILD-TYPE 7 16 21
'C15ORF24 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.214 (Fisher's exact test), Q value = 1

Table S7.  Gene #1: 'C15ORF24 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
C15ORF24 MUTATED 1 2 3
C15ORF24 WILD-TYPE 20 7 17
'C15ORF24 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.261 (Fisher's exact test), Q value = 1

Table S8.  Gene #1: 'C15ORF24 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
C15ORF24 MUTATED 2 1 3
C15ORF24 WILD-TYPE 7 21 16
'IRS1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.336 (Fisher's exact test), Q value = 1

Table S9.  Gene #2: 'IRS1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
IRS1 MUTATED 2 2 0
IRS1 WILD-TYPE 11 27 14
'IRS1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.506 (Fisher's exact test), Q value = 1

Table S10.  Gene #2: 'IRS1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
IRS1 MUTATED 2 3 0
IRS1 WILD-TYPE 16 21 14
'IRS1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.741 (Fisher's exact test), Q value = 1

Table S11.  Gene #2: 'IRS1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
IRS1 MUTATED 2 2 0 1
IRS1 WILD-TYPE 16 10 9 7
'IRS1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S12.  Gene #2: 'IRS1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
IRS1 MUTATED 0 2 3
IRS1 WILD-TYPE 4 16 22
'IRS1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.833 (Fisher's exact test), Q value = 1

Table S13.  Gene #2: 'IRS1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
IRS1 MUTATED 2 1 2
IRS1 WILD-TYPE 23 10 12
'IRS1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S14.  Gene #2: 'IRS1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
IRS1 MUTATED 1 2 2
IRS1 WILD-TYPE 7 17 21
'IRS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.711 (Fisher's exact test), Q value = 1

Table S15.  Gene #2: 'IRS1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
IRS1 MUTATED 2 0 3
IRS1 WILD-TYPE 19 9 17
'IRS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S16.  Gene #2: 'IRS1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
IRS1 MUTATED 1 2 2
IRS1 WILD-TYPE 8 20 17
'FYN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.126 (Fisher's exact test), Q value = 1

Table S17.  Gene #3: 'FYN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
FYN MUTATED 0 5 0
FYN WILD-TYPE 13 24 14
'FYN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.244 (Fisher's exact test), Q value = 1

Table S18.  Gene #3: 'FYN MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
FYN MUTATED 0 3 2
FYN WILD-TYPE 18 21 12
'FYN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0383 (Fisher's exact test), Q value = 1

Table S19.  Gene #3: 'FYN MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
FYN MUTATED 0 1 3 1
FYN WILD-TYPE 18 11 6 7

Figure S1.  Get High-res Image Gene #3: 'FYN MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

'FYN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0972 (Fisher's exact test), Q value = 1

Table S20.  Gene #3: 'FYN MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
FYN MUTATED 1 0 4
FYN WILD-TYPE 3 18 21
'FYN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.164 (Fisher's exact test), Q value = 1

Table S21.  Gene #3: 'FYN MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
FYN MUTATED 1 1 3
FYN WILD-TYPE 24 10 11
'FYN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.451 (Fisher's exact test), Q value = 1

Table S22.  Gene #3: 'FYN MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
FYN MUTATED 1 3 1
FYN WILD-TYPE 7 16 22
'FYN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0919 (Fisher's exact test), Q value = 1

Table S23.  Gene #3: 'FYN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
FYN MUTATED 0 1 4
FYN WILD-TYPE 21 8 16
'FYN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0693 (Fisher's exact test), Q value = 1

Table S24.  Gene #3: 'FYN MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
FYN MUTATED 2 0 3
FYN WILD-TYPE 7 22 16
'FADS2 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S25.  Gene #4: 'FADS2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
FADS2 MUTATED 1 3 1
FADS2 WILD-TYPE 12 26 13
'FADS2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.712 (Fisher's exact test), Q value = 1

Table S26.  Gene #4: 'FADS2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
FADS2 MUTATED 1 2 2
FADS2 WILD-TYPE 17 22 12
'FADS2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.412 (Fisher's exact test), Q value = 1

Table S27.  Gene #4: 'FADS2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
FADS2 MUTATED 2 0 2 1
FADS2 WILD-TYPE 16 12 7 7
'FADS2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S28.  Gene #4: 'FADS2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
FADS2 MUTATED 0 2 3
FADS2 WILD-TYPE 4 16 22
'FADS2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.215 (Fisher's exact test), Q value = 1

Table S29.  Gene #4: 'FADS2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
FADS2 MUTATED 2 0 3
FADS2 WILD-TYPE 23 11 11
'FADS2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0964 (Fisher's exact test), Q value = 1

Table S30.  Gene #4: 'FADS2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
FADS2 MUTATED 2 0 3
FADS2 WILD-TYPE 6 19 20
'FADS2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.711 (Fisher's exact test), Q value = 1

Table S31.  Gene #4: 'FADS2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
FADS2 MUTATED 2 0 3
FADS2 WILD-TYPE 19 9 17
'FADS2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0239 (Fisher's exact test), Q value = 1

Table S32.  Gene #4: 'FADS2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
FADS2 MUTATED 3 2 0
FADS2 WILD-TYPE 6 20 19

Figure S2.  Get High-res Image Gene #4: 'FADS2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'C14ORF49 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.31 (Fisher's exact test), Q value = 1

Table S33.  Gene #5: 'C14ORF49 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
C14ORF49 MUTATED 1 7 1
C14ORF49 WILD-TYPE 12 22 13
'C14ORF49 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.117 (Fisher's exact test), Q value = 1

Table S34.  Gene #5: 'C14ORF49 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
C14ORF49 MUTATED 1 7 1
C14ORF49 WILD-TYPE 17 17 13
'C14ORF49 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.259 (Fisher's exact test), Q value = 1

Table S35.  Gene #5: 'C14ORF49 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
C14ORF49 MUTATED 1 2 3 1
C14ORF49 WILD-TYPE 17 10 6 7
'C14ORF49 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.233 (Fisher's exact test), Q value = 1

Table S36.  Gene #5: 'C14ORF49 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
C14ORF49 MUTATED 0 1 6
C14ORF49 WILD-TYPE 4 17 19
'C14ORF49 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.149 (Fisher's exact test), Q value = 1

Table S37.  Gene #5: 'C14ORF49 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
C14ORF49 MUTATED 2 3 4
C14ORF49 WILD-TYPE 23 8 10
'C14ORF49 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.191 (Fisher's exact test), Q value = 1

Table S38.  Gene #5: 'C14ORF49 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
C14ORF49 MUTATED 3 4 2
C14ORF49 WILD-TYPE 5 15 21
'C14ORF49 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.441 (Fisher's exact test), Q value = 1

Table S39.  Gene #5: 'C14ORF49 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
C14ORF49 MUTATED 2 2 5
C14ORF49 WILD-TYPE 19 7 15
'C14ORF49 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.239 (Fisher's exact test), Q value = 1

Table S40.  Gene #5: 'C14ORF49 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
C14ORF49 MUTATED 3 2 4
C14ORF49 WILD-TYPE 6 20 15
'FGF10 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S41.  Gene #6: 'FGF10 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
FGF10 MUTATED 1 4 1
FGF10 WILD-TYPE 12 25 13
'FGF10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 1

Table S42.  Gene #6: 'FGF10 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
FGF10 MUTATED 0 3 3
FGF10 WILD-TYPE 18 21 11
'FGF10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.622 (Fisher's exact test), Q value = 1

Table S43.  Gene #6: 'FGF10 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
FGF10 MUTATED 1 2 2 1
FGF10 WILD-TYPE 17 10 7 7
'FGF10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.423 (Fisher's exact test), Q value = 1

Table S44.  Gene #6: 'FGF10 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
FGF10 MUTATED 0 1 5
FGF10 WILD-TYPE 4 17 20
'FGF10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.155 (Fisher's exact test), Q value = 1

Table S45.  Gene #6: 'FGF10 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
FGF10 MUTATED 1 2 3
FGF10 WILD-TYPE 24 9 11
'FGF10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.848 (Fisher's exact test), Q value = 1

Table S46.  Gene #6: 'FGF10 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
FGF10 MUTATED 1 3 2
FGF10 WILD-TYPE 7 16 21
'FGF10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0911 (Fisher's exact test), Q value = 1

Table S47.  Gene #6: 'FGF10 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
FGF10 MUTATED 1 0 5
FGF10 WILD-TYPE 20 9 15
'FGF10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.261 (Fisher's exact test), Q value = 1

Table S48.  Gene #6: 'FGF10 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
FGF10 MUTATED 2 1 3
FGF10 WILD-TYPE 7 21 16
'CEL MUTATION STATUS' versus 'CN_CNMF'

P value = 0.66 (Fisher's exact test), Q value = 1

Table S49.  Gene #7: 'CEL MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
CEL MUTATED 1 3 0
CEL WILD-TYPE 12 26 14
'CEL MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S50.  Gene #7: 'CEL MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
CEL MUTATED 1 2 1
CEL WILD-TYPE 17 22 13
'CEL MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0397 (Fisher's exact test), Q value = 1

Table S51.  Gene #7: 'CEL MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
CEL MUTATED 1 0 3 0
CEL WILD-TYPE 17 12 6 8

Figure S3.  Get High-res Image Gene #7: 'CEL MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

'CEL MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.743 (Fisher's exact test), Q value = 1

Table S52.  Gene #7: 'CEL MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
CEL MUTATED 0 1 3
CEL WILD-TYPE 4 17 22
'CEL MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 1

Table S53.  Gene #7: 'CEL MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
CEL MUTATED 1 0 3
CEL WILD-TYPE 24 11 11
'CEL MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.812 (Fisher's exact test), Q value = 1

Table S54.  Gene #7: 'CEL MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
CEL MUTATED 1 1 2
CEL WILD-TYPE 7 18 21
'CEL MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.391 (Fisher's exact test), Q value = 1

Table S55.  Gene #7: 'CEL MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
CEL MUTATED 1 0 3
CEL WILD-TYPE 20 9 17
'CEL MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.29 (Fisher's exact test), Q value = 1

Table S56.  Gene #7: 'CEL MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
CEL MUTATED 2 1 1
CEL WILD-TYPE 7 21 18
'CCR3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.7 (Fisher's exact test), Q value = 1

Table S57.  Gene #8: 'CCR3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
CCR3 MUTATED 2 2 1
CCR3 WILD-TYPE 11 27 13
'CCR3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.712 (Fisher's exact test), Q value = 1

Table S58.  Gene #8: 'CCR3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
CCR3 MUTATED 1 2 2
CCR3 WILD-TYPE 17 22 12
'CCR3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.738 (Fisher's exact test), Q value = 1

Table S59.  Gene #8: 'CCR3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
CCR3 MUTATED 2 0 1 1
CCR3 WILD-TYPE 16 12 8 7
'CCR3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S60.  Gene #8: 'CCR3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
CCR3 MUTATED 0 2 2
CCR3 WILD-TYPE 4 16 23
'CCR3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.582 (Fisher's exact test), Q value = 1

Table S61.  Gene #8: 'CCR3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
CCR3 MUTATED 3 0 2
CCR3 WILD-TYPE 22 11 12
'CCR3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.694 (Fisher's exact test), Q value = 1

Table S62.  Gene #8: 'CCR3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
CCR3 MUTATED 1 1 3
CCR3 WILD-TYPE 7 18 20
'CCR3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.831 (Fisher's exact test), Q value = 1

Table S63.  Gene #8: 'CCR3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
CCR3 MUTATED 3 0 2
CCR3 WILD-TYPE 18 9 18
'CCR3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.832 (Fisher's exact test), Q value = 1

Table S64.  Gene #8: 'CCR3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
CCR3 MUTATED 1 3 1
CCR3 WILD-TYPE 8 19 18
'OR10A2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.339 (Fisher's exact test), Q value = 1

Table S65.  Gene #9: 'OR10A2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
OR10A2 MUTATED 0 5 1
OR10A2 WILD-TYPE 13 24 13
'OR10A2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.08 (Fisher's exact test), Q value = 1

Table S66.  Gene #9: 'OR10A2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
OR10A2 MUTATED 0 5 1
OR10A2 WILD-TYPE 18 19 13
'OR10A2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0383 (Fisher's exact test), Q value = 1

Table S67.  Gene #9: 'OR10A2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
OR10A2 MUTATED 0 1 3 1
OR10A2 WILD-TYPE 18 11 6 7

Figure S4.  Get High-res Image Gene #9: 'OR10A2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

'OR10A2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.132 (Fisher's exact test), Q value = 1

Table S68.  Gene #9: 'OR10A2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
OR10A2 MUTATED 0 0 5
OR10A2 WILD-TYPE 4 18 20
'OR10A2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.057 (Fisher's exact test), Q value = 1

Table S69.  Gene #9: 'OR10A2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
OR10A2 MUTATED 1 1 4
OR10A2 WILD-TYPE 24 10 10
'OR10A2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0482 (Fisher's exact test), Q value = 1

Table S70.  Gene #9: 'OR10A2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
OR10A2 MUTATED 3 2 1
OR10A2 WILD-TYPE 5 17 22

Figure S5.  Get High-res Image Gene #9: 'OR10A2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'OR10A2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.272 (Fisher's exact test), Q value = 1

Table S71.  Gene #9: 'OR10A2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
OR10A2 MUTATED 1 1 4
OR10A2 WILD-TYPE 20 8 16
'OR10A2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.109 (Fisher's exact test), Q value = 1

Table S72.  Gene #9: 'OR10A2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
OR10A2 MUTATED 3 1 2
OR10A2 WILD-TYPE 6 21 17
'OR10A7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.718 (Fisher's exact test), Q value = 1

Table S73.  Gene #10: 'OR10A7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
OR10A7 MUTATED 1 6 2
OR10A7 WILD-TYPE 12 23 12
'OR10A7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.342 (Fisher's exact test), Q value = 1

Table S74.  Gene #10: 'OR10A7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
OR10A7 MUTATED 1 5 3
OR10A7 WILD-TYPE 17 19 11
'OR10A7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0971 (Fisher's exact test), Q value = 1

Table S75.  Gene #10: 'OR10A7 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
OR10A7 MUTATED 2 2 4 0
OR10A7 WILD-TYPE 16 10 5 8
'OR10A7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.415 (Fisher's exact test), Q value = 1

Table S76.  Gene #10: 'OR10A7 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
OR10A7 MUTATED 0 2 6
OR10A7 WILD-TYPE 4 16 19
'OR10A7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.396 (Fisher's exact test), Q value = 1

Table S77.  Gene #10: 'OR10A7 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
OR10A7 MUTATED 3 2 4
OR10A7 WILD-TYPE 22 9 10
'OR10A7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.786 (Fisher's exact test), Q value = 1

Table S78.  Gene #10: 'OR10A7 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
OR10A7 MUTATED 2 3 4
OR10A7 WILD-TYPE 6 16 19
'OR10A7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.622 (Fisher's exact test), Q value = 1

Table S79.  Gene #10: 'OR10A7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
OR10A7 MUTATED 3 1 5
OR10A7 WILD-TYPE 18 8 15
'OR10A7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.49 (Fisher's exact test), Q value = 1

Table S80.  Gene #10: 'OR10A7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
OR10A7 MUTATED 3 3 3
OR10A7 WILD-TYPE 6 19 16
'POP5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.126 (Fisher's exact test), Q value = 1

Table S81.  Gene #11: 'POP5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
POP5 MUTATED 0 5 0
POP5 WILD-TYPE 13 24 14
'POP5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.155 (Fisher's exact test), Q value = 1

Table S82.  Gene #11: 'POP5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
POP5 MUTATED 0 4 1
POP5 WILD-TYPE 18 20 13
'POP5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0199 (Fisher's exact test), Q value = 1

Table S83.  Gene #11: 'POP5 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
POP5 MUTATED 0 2 3 0
POP5 WILD-TYPE 18 10 6 8

Figure S6.  Get High-res Image Gene #11: 'POP5 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

'POP5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.132 (Fisher's exact test), Q value = 1

Table S84.  Gene #11: 'POP5 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
POP5 MUTATED 0 0 5
POP5 WILD-TYPE 4 18 20
'POP5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.029 (Fisher's exact test), Q value = 1

Table S85.  Gene #11: 'POP5 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
POP5 MUTATED 0 2 3
POP5 WILD-TYPE 25 9 11

Figure S7.  Get High-res Image Gene #11: 'POP5 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'POP5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.451 (Fisher's exact test), Q value = 1

Table S86.  Gene #11: 'POP5 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
POP5 MUTATED 1 3 1
POP5 WILD-TYPE 7 16 22
'POP5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0919 (Fisher's exact test), Q value = 1

Table S87.  Gene #11: 'POP5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
POP5 MUTATED 0 1 4
POP5 WILD-TYPE 21 8 16
'POP5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0693 (Fisher's exact test), Q value = 1

Table S88.  Gene #11: 'POP5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
POP5 MUTATED 2 0 3
POP5 WILD-TYPE 7 22 16
'SRP14 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S89.  Gene #12: 'SRP14 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
SRP14 MUTATED 1 4 2
SRP14 WILD-TYPE 12 25 12
'SRP14 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S90.  Gene #12: 'SRP14 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
SRP14 MUTATED 2 3 2
SRP14 WILD-TYPE 16 21 12
'SRP14 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.932 (Fisher's exact test), Q value = 1

Table S91.  Gene #12: 'SRP14 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
SRP14 MUTATED 3 1 1 1
SRP14 WILD-TYPE 15 11 8 7
'SRP14 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.514 (Fisher's exact test), Q value = 1

Table S92.  Gene #12: 'SRP14 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
SRP14 MUTATED 1 3 2
SRP14 WILD-TYPE 3 15 23
'SRP14 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.758 (Fisher's exact test), Q value = 1

Table S93.  Gene #12: 'SRP14 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
SRP14 MUTATED 4 2 1
SRP14 WILD-TYPE 21 9 13
'SRP14 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.492 (Fisher's exact test), Q value = 1

Table S94.  Gene #12: 'SRP14 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
SRP14 MUTATED 0 4 3
SRP14 WILD-TYPE 8 15 20
'SRP14 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.204 (Fisher's exact test), Q value = 1

Table S95.  Gene #12: 'SRP14 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
SRP14 MUTATED 2 3 2
SRP14 WILD-TYPE 19 6 18
'SRP14 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.426 (Fisher's exact test), Q value = 1

Table S96.  Gene #12: 'SRP14 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
SRP14 MUTATED 0 3 4
SRP14 WILD-TYPE 9 19 15
'WRN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.329 (Fisher's exact test), Q value = 1

Table S97.  Gene #13: 'WRN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
WRN MUTATED 2 3 0
WRN WILD-TYPE 11 26 14
'WRN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.845 (Fisher's exact test), Q value = 1

Table S98.  Gene #13: 'WRN MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
WRN MUTATED 1 3 1
WRN WILD-TYPE 17 21 13
'WRN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.914 (Fisher's exact test), Q value = 1

Table S99.  Gene #13: 'WRN MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
WRN MUTATED 2 2 1 0
WRN WILD-TYPE 16 10 8 8
'WRN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.611 (Fisher's exact test), Q value = 1

Table S100.  Gene #13: 'WRN MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
WRN MUTATED 0 1 4
WRN WILD-TYPE 4 17 21
'WRN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.691 (Fisher's exact test), Q value = 1

Table S101.  Gene #13: 'WRN MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
WRN MUTATED 2 2 1
WRN WILD-TYPE 23 9 13
'WRN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S102.  Gene #13: 'WRN MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
WRN MUTATED 1 2 2
WRN WILD-TYPE 7 17 21
'WRN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S103.  Gene #13: 'WRN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
WRN MUTATED 2 1 2
WRN WILD-TYPE 19 8 18
'WRN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S104.  Gene #13: 'WRN MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
WRN MUTATED 1 2 2
WRN WILD-TYPE 8 20 17
'TMEM40 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.691 (Fisher's exact test), Q value = 1

Table S105.  Gene #14: 'TMEM40 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
TMEM40 MUTATED 1 4 3
TMEM40 WILD-TYPE 12 25 11
'TMEM40 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.342 (Fisher's exact test), Q value = 1

Table S106.  Gene #14: 'TMEM40 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
TMEM40 MUTATED 1 5 3
TMEM40 WILD-TYPE 17 19 11
'TMEM40 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.567 (Fisher's exact test), Q value = 1

Table S107.  Gene #14: 'TMEM40 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
TMEM40 MUTATED 3 1 3 1
TMEM40 WILD-TYPE 15 11 6 7
'TMEM40 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S108.  Gene #14: 'TMEM40 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
TMEM40 MUTATED 0 3 5
TMEM40 WILD-TYPE 4 15 20
'TMEM40 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.561 (Fisher's exact test), Q value = 1

Table S109.  Gene #14: 'TMEM40 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
TMEM40 MUTATED 4 1 4
TMEM40 WILD-TYPE 21 10 10
'TMEM40 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.786 (Fisher's exact test), Q value = 1

Table S110.  Gene #14: 'TMEM40 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
TMEM40 MUTATED 2 3 4
TMEM40 WILD-TYPE 6 16 19
'TMEM40 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.317 (Fisher's exact test), Q value = 1

Table S111.  Gene #14: 'TMEM40 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
TMEM40 MUTATED 4 0 5
TMEM40 WILD-TYPE 17 9 15
'TMEM40 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S112.  Gene #14: 'TMEM40 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
TMEM40 MUTATED 2 4 3
TMEM40 WILD-TYPE 7 18 16
'KRAS MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0479 (Fisher's exact test), Q value = 1

Table S113.  Gene #15: 'KRAS MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
KRAS MUTATED 11 13 9
KRAS WILD-TYPE 2 16 5

Figure S8.  Get High-res Image Gene #15: 'KRAS MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'KRAS MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.000979 (Fisher's exact test), Q value = 0.82

Table S114.  Gene #15: 'KRAS MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
KRAS MUTATED 13 7 12
KRAS WILD-TYPE 5 17 2

Figure S9.  Get High-res Image Gene #15: 'KRAS MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'KRAS MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0506 (Fisher's exact test), Q value = 1

Table S115.  Gene #15: 'KRAS MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
KRAS MUTATED 14 4 3 4
KRAS WILD-TYPE 4 8 6 4
'KRAS MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0158 (Fisher's exact test), Q value = 1

Table S116.  Gene #15: 'KRAS MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
KRAS MUTATED 2 14 9
KRAS WILD-TYPE 2 4 16

Figure S10.  Get High-res Image Gene #15: 'KRAS MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'KRAS MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0805 (Fisher's exact test), Q value = 1

Table S117.  Gene #15: 'KRAS MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
KRAS MUTATED 17 4 5
KRAS WILD-TYPE 8 7 9
'KRAS MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.133 (Fisher's exact test), Q value = 1

Table S118.  Gene #15: 'KRAS MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
KRAS MUTATED 2 9 15
KRAS WILD-TYPE 6 10 8
'KRAS MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.207 (Fisher's exact test), Q value = 1

Table S119.  Gene #15: 'KRAS MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
KRAS MUTATED 14 4 8
KRAS WILD-TYPE 7 5 12
'KRAS MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.286 (Fisher's exact test), Q value = 1

Table S120.  Gene #15: 'KRAS MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
KRAS MUTATED 3 14 9
KRAS WILD-TYPE 6 8 10
'TP53 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0713 (Fisher's exact test), Q value = 1

Table S121.  Gene #16: 'TP53 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
TP53 MUTATED 10 15 12
TP53 WILD-TYPE 3 14 2
'TP53 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00522 (Fisher's exact test), Q value = 1

Table S122.  Gene #16: 'TP53 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
TP53 MUTATED 16 10 10
TP53 WILD-TYPE 2 14 4

Figure S11.  Get High-res Image Gene #16: 'TP53 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'TP53 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.125 (Fisher's exact test), Q value = 1

Table S123.  Gene #16: 'TP53 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
TP53 MUTATED 15 8 5 3
TP53 WILD-TYPE 3 4 4 5
'TP53 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0992 (Fisher's exact test), Q value = 1

Table S124.  Gene #16: 'TP53 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
TP53 MUTATED 2 15 14
TP53 WILD-TYPE 2 3 11
'TP53 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.419 (Fisher's exact test), Q value = 1

Table S125.  Gene #16: 'TP53 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
TP53 MUTATED 18 7 7
TP53 WILD-TYPE 7 4 7
'TP53 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.389 (Fisher's exact test), Q value = 1

Table S126.  Gene #16: 'TP53 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
TP53 MUTATED 4 11 17
TP53 WILD-TYPE 4 8 6
'TP53 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.302 (Fisher's exact test), Q value = 1

Table S127.  Gene #16: 'TP53 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
TP53 MUTATED 16 5 11
TP53 WILD-TYPE 5 4 9
'TP53 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.497 (Fisher's exact test), Q value = 1

Table S128.  Gene #16: 'TP53 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
TP53 MUTATED 5 16 11
TP53 WILD-TYPE 4 6 8
'QRICH1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0687 (Fisher's exact test), Q value = 1

Table S129.  Gene #17: 'QRICH1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
QRICH1 MUTATED 0 6 0
QRICH1 WILD-TYPE 13 23 14
'QRICH1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.123 (Fisher's exact test), Q value = 1

Table S130.  Gene #17: 'QRICH1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
QRICH1 MUTATED 0 4 3
QRICH1 WILD-TYPE 18 20 11
'QRICH1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.386 (Fisher's exact test), Q value = 1

Table S131.  Gene #17: 'QRICH1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
QRICH1 MUTATED 1 3 1 2
QRICH1 WILD-TYPE 17 9 8 6
'QRICH1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0845 (Fisher's exact test), Q value = 1

Table S132.  Gene #17: 'QRICH1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
QRICH1 MUTATED 2 1 4
QRICH1 WILD-TYPE 2 17 21
'QRICH1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.426 (Fisher's exact test), Q value = 1

Table S133.  Gene #17: 'QRICH1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
QRICH1 MUTATED 3 3 1
QRICH1 WILD-TYPE 22 8 13
'QRICH1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.12 (Fisher's exact test), Q value = 1

Table S134.  Gene #17: 'QRICH1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
QRICH1 MUTATED 1 5 1
QRICH1 WILD-TYPE 7 14 22
'QRICH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00445 (Fisher's exact test), Q value = 1

Table S135.  Gene #17: 'QRICH1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
QRICH1 MUTATED 0 4 3
QRICH1 WILD-TYPE 21 5 17

Figure S12.  Get High-res Image Gene #17: 'QRICH1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'QRICH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.11 (Fisher's exact test), Q value = 1

Table S136.  Gene #17: 'QRICH1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
QRICH1 MUTATED 1 1 5
QRICH1 WILD-TYPE 8 21 14
'ST6GALNAC5 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S137.  Gene #18: 'ST6GALNAC5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
ST6GALNAC5 MUTATED 1 4 1
ST6GALNAC5 WILD-TYPE 12 25 13
'ST6GALNAC5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.356 (Fisher's exact test), Q value = 1

Table S138.  Gene #18: 'ST6GALNAC5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
ST6GALNAC5 MUTATED 3 3 0
ST6GALNAC5 WILD-TYPE 15 21 14
'ST6GALNAC5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.655 (Fisher's exact test), Q value = 1

Table S139.  Gene #18: 'ST6GALNAC5 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
ST6GALNAC5 MUTATED 3 1 2 0
ST6GALNAC5 WILD-TYPE 15 11 7 8
'ST6GALNAC5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.82 (Fisher's exact test), Q value = 1

Table S140.  Gene #18: 'ST6GALNAC5 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
ST6GALNAC5 MUTATED 0 3 3
ST6GALNAC5 WILD-TYPE 4 15 22
'ST6GALNAC5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S141.  Gene #18: 'ST6GALNAC5 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
ST6GALNAC5 MUTATED 3 1 2
ST6GALNAC5 WILD-TYPE 22 10 12
'ST6GALNAC5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S142.  Gene #18: 'ST6GALNAC5 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
ST6GALNAC5 MUTATED 1 2 3
ST6GALNAC5 WILD-TYPE 7 17 20
'ST6GALNAC5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.721 (Fisher's exact test), Q value = 1

Table S143.  Gene #18: 'ST6GALNAC5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
ST6GALNAC5 MUTATED 3 0 3
ST6GALNAC5 WILD-TYPE 18 9 17
'ST6GALNAC5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S144.  Gene #18: 'ST6GALNAC5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
ST6GALNAC5 MUTATED 1 3 2
ST6GALNAC5 WILD-TYPE 8 19 17
'TNFSF9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.238 (Fisher's exact test), Q value = 1

Table S145.  Gene #19: 'TNFSF9 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
TNFSF9 MUTATED 1 5 0
TNFSF9 WILD-TYPE 12 24 14
'TNFSF9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.748 (Fisher's exact test), Q value = 1

Table S146.  Gene #19: 'TNFSF9 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
TNFSF9 MUTATED 1 3 2
TNFSF9 WILD-TYPE 17 21 12
'TNFSF9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.169 (Fisher's exact test), Q value = 1

Table S147.  Gene #19: 'TNFSF9 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
TNFSF9 MUTATED 2 1 0 3
TNFSF9 WILD-TYPE 16 11 9 5
'TNFSF9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.135 (Fisher's exact test), Q value = 1

Table S148.  Gene #19: 'TNFSF9 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
TNFSF9 MUTATED 2 2 2
TNFSF9 WILD-TYPE 2 16 23
'TNFSF9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.451 (Fisher's exact test), Q value = 1

Table S149.  Gene #19: 'TNFSF9 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
TNFSF9 MUTATED 4 0 2
TNFSF9 WILD-TYPE 21 11 12
'TNFSF9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.848 (Fisher's exact test), Q value = 1

Table S150.  Gene #19: 'TNFSF9 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
TNFSF9 MUTATED 1 3 2
TNFSF9 WILD-TYPE 7 16 21
'TNFSF9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 1

Table S151.  Gene #19: 'TNFSF9 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
TNFSF9 MUTATED 1 3 2
TNFSF9 WILD-TYPE 20 6 18
'TNFSF9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.851 (Fisher's exact test), Q value = 1

Table S152.  Gene #19: 'TNFSF9 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
TNFSF9 MUTATED 1 2 3
TNFSF9 WILD-TYPE 8 20 16
'CDKN2A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.413 (Fisher's exact test), Q value = 1

Table S153.  Gene #20: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
CDKN2A MUTATED 3 5 5
CDKN2A WILD-TYPE 10 24 9
'CDKN2A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.11 (Fisher's exact test), Q value = 1

Table S154.  Gene #20: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
CDKN2A MUTATED 4 3 6
CDKN2A WILD-TYPE 14 21 8
'CDKN2A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.599 (Fisher's exact test), Q value = 1

Table S155.  Gene #20: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
CDKN2A MUTATED 5 4 1 1
CDKN2A WILD-TYPE 13 8 8 7
'CDKN2A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.876 (Fisher's exact test), Q value = 1

Table S156.  Gene #20: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
CDKN2A MUTATED 1 5 5
CDKN2A WILD-TYPE 3 13 20
'CDKN2A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.213 (Fisher's exact test), Q value = 1

Table S157.  Gene #20: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
CDKN2A MUTATED 7 4 1
CDKN2A WILD-TYPE 18 7 13
'CDKN2A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.82 (Fisher's exact test), Q value = 1

Table S158.  Gene #20: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
CDKN2A MUTATED 1 5 6
CDKN2A WILD-TYPE 7 14 17
'CDKN2A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.906 (Fisher's exact test), Q value = 1

Table S159.  Gene #20: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
CDKN2A MUTATED 6 2 4
CDKN2A WILD-TYPE 15 7 16
'CDKN2A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.753 (Fisher's exact test), Q value = 1

Table S160.  Gene #20: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
CDKN2A MUTATED 1 6 5
CDKN2A WILD-TYPE 8 16 14
'SEH1L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.405 (Fisher's exact test), Q value = 1

Table S161.  Gene #21: 'SEH1L MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
SEH1L MUTATED 1 6 1
SEH1L WILD-TYPE 12 23 13
'SEH1L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.388 (Fisher's exact test), Q value = 1

Table S162.  Gene #21: 'SEH1L MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
SEH1L MUTATED 1 5 2
SEH1L WILD-TYPE 17 19 12
'SEH1L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.589 (Fisher's exact test), Q value = 1

Table S163.  Gene #21: 'SEH1L MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
SEH1L MUTATED 2 2 3 1
SEH1L WILD-TYPE 16 10 6 7
'SEH1L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.608 (Fisher's exact test), Q value = 1

Table S164.  Gene #21: 'SEH1L MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
SEH1L MUTATED 1 2 5
SEH1L WILD-TYPE 3 16 20
'SEH1L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.689 (Fisher's exact test), Q value = 1

Table S165.  Gene #21: 'SEH1L MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
SEH1L MUTATED 3 2 3
SEH1L WILD-TYPE 22 9 11
'SEH1L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0889 (Fisher's exact test), Q value = 1

Table S166.  Gene #21: 'SEH1L MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
SEH1L MUTATED 2 5 1
SEH1L WILD-TYPE 6 14 22
'SEH1L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0339 (Fisher's exact test), Q value = 1

Table S167.  Gene #21: 'SEH1L MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
SEH1L MUTATED 1 4 3
SEH1L WILD-TYPE 20 5 17

Figure S13.  Get High-res Image Gene #21: 'SEH1L MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'SEH1L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.104 (Fisher's exact test), Q value = 1

Table S168.  Gene #21: 'SEH1L MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
SEH1L MUTATED 2 1 5
SEH1L WILD-TYPE 7 21 14
'SCD MUTATION STATUS' versus 'CN_CNMF'

P value = 0.405 (Fisher's exact test), Q value = 1

Table S169.  Gene #22: 'SCD MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
SCD MUTATED 1 6 1
SCD WILD-TYPE 12 23 13
'SCD MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.388 (Fisher's exact test), Q value = 1

Table S170.  Gene #22: 'SCD MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
SCD MUTATED 1 4 3
SCD WILD-TYPE 17 20 11
'SCD MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.093 (Fisher's exact test), Q value = 1

Table S171.  Gene #22: 'SCD MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
SCD MUTATED 3 1 4 0
SCD WILD-TYPE 15 11 5 8
'SCD MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S172.  Gene #22: 'SCD MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
SCD MUTATED 0 3 5
SCD WILD-TYPE 4 15 20
'SCD MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.357 (Fisher's exact test), Q value = 1

Table S173.  Gene #22: 'SCD MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
SCD MUTATED 3 1 4
SCD WILD-TYPE 22 10 10
'SCD MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.77 (Fisher's exact test), Q value = 1

Table S174.  Gene #22: 'SCD MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
SCD MUTATED 2 3 3
SCD WILD-TYPE 6 16 20
'SCD MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.6 (Fisher's exact test), Q value = 1

Table S175.  Gene #22: 'SCD MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
SCD MUTATED 2 2 4
SCD WILD-TYPE 19 7 16
'SCD MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.275 (Fisher's exact test), Q value = 1

Table S176.  Gene #22: 'SCD MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
SCD MUTATED 3 2 3
SCD WILD-TYPE 6 20 16
'TMC4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.889 (Fisher's exact test), Q value = 1

Table S177.  Gene #23: 'TMC4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
TMC4 MUTATED 2 4 3
TMC4 WILD-TYPE 11 25 11
'TMC4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.214 (Fisher's exact test), Q value = 1

Table S178.  Gene #23: 'TMC4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
TMC4 MUTATED 5 2 2
TMC4 WILD-TYPE 13 22 12
'TMC4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.39 (Fisher's exact test), Q value = 1

Table S179.  Gene #23: 'TMC4 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
TMC4 MUTATED 5 2 0 1
TMC4 WILD-TYPE 13 10 9 7
'TMC4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.153 (Fisher's exact test), Q value = 1

Table S180.  Gene #23: 'TMC4 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
TMC4 MUTATED 1 5 2
TMC4 WILD-TYPE 3 13 23
'TMC4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.136 (Fisher's exact test), Q value = 1

Table S181.  Gene #23: 'TMC4 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
TMC4 MUTATED 6 2 0
TMC4 WILD-TYPE 19 9 14
'TMC4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.516 (Fisher's exact test), Q value = 1

Table S182.  Gene #23: 'TMC4 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
TMC4 MUTATED 0 4 4
TMC4 WILD-TYPE 8 15 19
'TMC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.676 (Fisher's exact test), Q value = 1

Table S183.  Gene #23: 'TMC4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
TMC4 MUTATED 4 2 2
TMC4 WILD-TYPE 17 7 18
'TMC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.462 (Fisher's exact test), Q value = 1

Table S184.  Gene #23: 'TMC4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
TMC4 MUTATED 0 4 4
TMC4 WILD-TYPE 9 18 15
'MED15 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S185.  Gene #24: 'MED15 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
MED15 MUTATED 2 5 2
MED15 WILD-TYPE 11 24 12
'MED15 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.816 (Fisher's exact test), Q value = 1

Table S186.  Gene #24: 'MED15 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
MED15 MUTATED 2 4 3
MED15 WILD-TYPE 16 20 11
'MED15 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.665 (Fisher's exact test), Q value = 1

Table S187.  Gene #24: 'MED15 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
MED15 MUTATED 5 1 2 1
MED15 WILD-TYPE 13 11 7 7
'MED15 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.375 (Fisher's exact test), Q value = 1

Table S188.  Gene #24: 'MED15 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
MED15 MUTATED 1 5 3
MED15 WILD-TYPE 3 13 22
'MED15 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.632 (Fisher's exact test), Q value = 1

Table S189.  Gene #24: 'MED15 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
MED15 MUTATED 6 1 2
MED15 WILD-TYPE 19 10 12
'MED15 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S190.  Gene #24: 'MED15 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
MED15 MUTATED 1 4 4
MED15 WILD-TYPE 7 15 19
'MED15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.492 (Fisher's exact test), Q value = 1

Table S191.  Gene #24: 'MED15 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
MED15 MUTATED 3 3 3
MED15 WILD-TYPE 18 6 17
'MED15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S192.  Gene #24: 'MED15 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
MED15 MUTATED 1 4 4
MED15 WILD-TYPE 8 18 15
'TNFRSF9 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S193.  Gene #25: 'TNFRSF9 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
TNFRSF9 MUTATED 1 4 1
TNFRSF9 WILD-TYPE 12 25 13
'TNFRSF9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.549 (Fisher's exact test), Q value = 1

Table S194.  Gene #25: 'TNFRSF9 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
TNFRSF9 MUTATED 1 4 1
TNFRSF9 WILD-TYPE 17 20 13
'TNFRSF9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.595 (Fisher's exact test), Q value = 1

Table S195.  Gene #25: 'TNFRSF9 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
TNFRSF9 MUTATED 1 1 2 1
TNFRSF9 WILD-TYPE 17 11 7 7
'TNFRSF9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.611 (Fisher's exact test), Q value = 1

Table S196.  Gene #25: 'TNFRSF9 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
TNFRSF9 MUTATED 0 1 4
TNFRSF9 WILD-TYPE 4 17 21
'TNFRSF9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.527 (Fisher's exact test), Q value = 1

Table S197.  Gene #25: 'TNFRSF9 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
TNFRSF9 MUTATED 2 1 3
TNFRSF9 WILD-TYPE 23 10 11
'TNFRSF9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.436 (Fisher's exact test), Q value = 1

Table S198.  Gene #25: 'TNFRSF9 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
TNFRSF9 MUTATED 2 2 2
TNFRSF9 WILD-TYPE 6 17 21
'TNFRSF9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.857 (Fisher's exact test), Q value = 1

Table S199.  Gene #25: 'TNFRSF9 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
TNFRSF9 MUTATED 2 1 3
TNFRSF9 WILD-TYPE 19 8 17
'TNFRSF9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.63 (Fisher's exact test), Q value = 1

Table S200.  Gene #25: 'TNFRSF9 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
TNFRSF9 MUTATED 2 2 2
TNFRSF9 WILD-TYPE 7 20 17
'BRDT MUTATION STATUS' versus 'CN_CNMF'

P value = 0.405 (Fisher's exact test), Q value = 1

Table S201.  Gene #26: 'BRDT MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
BRDT MUTATED 1 6 1
BRDT WILD-TYPE 12 23 13
'BRDT MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.388 (Fisher's exact test), Q value = 1

Table S202.  Gene #26: 'BRDT MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
BRDT MUTATED 1 5 2
BRDT WILD-TYPE 17 19 12
'BRDT MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.479 (Fisher's exact test), Q value = 1

Table S203.  Gene #26: 'BRDT MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
BRDT MUTATED 2 1 3 1
BRDT WILD-TYPE 16 11 6 7
'BRDT MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.836 (Fisher's exact test), Q value = 1

Table S204.  Gene #26: 'BRDT MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
BRDT MUTATED 0 2 5
BRDT WILD-TYPE 4 16 20
'BRDT MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0503 (Fisher's exact test), Q value = 1

Table S205.  Gene #26: 'BRDT MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
BRDT MUTATED 3 0 5
BRDT WILD-TYPE 22 11 9
'BRDT MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.391 (Fisher's exact test), Q value = 1

Table S206.  Gene #26: 'BRDT MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
BRDT MUTATED 2 4 2
BRDT WILD-TYPE 6 15 21
'BRDT MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.467 (Fisher's exact test), Q value = 1

Table S207.  Gene #26: 'BRDT MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
BRDT MUTATED 2 1 5
BRDT WILD-TYPE 19 8 15
'BRDT MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.522 (Fisher's exact test), Q value = 1

Table S208.  Gene #26: 'BRDT MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
BRDT MUTATED 2 2 4
BRDT WILD-TYPE 7 20 15
'CXXC4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.7 (Fisher's exact test), Q value = 1

Table S209.  Gene #27: 'CXXC4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
CXXC4 MUTATED 2 2 1
CXXC4 WILD-TYPE 11 27 13
'CXXC4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.748 (Fisher's exact test), Q value = 1

Table S210.  Gene #27: 'CXXC4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
CXXC4 MUTATED 1 3 2
CXXC4 WILD-TYPE 17 21 12
'CXXC4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.932 (Fisher's exact test), Q value = 1

Table S211.  Gene #27: 'CXXC4 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
CXXC4 MUTATED 3 1 1 1
CXXC4 WILD-TYPE 15 11 8 7
'CXXC4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.645 (Fisher's exact test), Q value = 1

Table S212.  Gene #27: 'CXXC4 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
CXXC4 MUTATED 1 2 3
CXXC4 WILD-TYPE 3 16 22
'CXXC4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.855 (Fisher's exact test), Q value = 1

Table S213.  Gene #27: 'CXXC4 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
CXXC4 MUTATED 4 1 1
CXXC4 WILD-TYPE 21 10 13
'CXXC4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.521 (Fisher's exact test), Q value = 1

Table S214.  Gene #27: 'CXXC4 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
CXXC4 MUTATED 1 1 4
CXXC4 WILD-TYPE 7 18 19
'CXXC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S215.  Gene #27: 'CXXC4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
CXXC4 MUTATED 3 1 2
CXXC4 WILD-TYPE 18 8 18
'CXXC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.541 (Fisher's exact test), Q value = 1

Table S216.  Gene #27: 'CXXC4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
CXXC4 MUTATED 1 4 1
CXXC4 WILD-TYPE 8 18 18
'MBD3 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S217.  Gene #28: 'MBD3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
MBD3 MUTATED 1 3 2
MBD3 WILD-TYPE 12 26 12
'MBD3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.866 (Fisher's exact test), Q value = 1

Table S218.  Gene #28: 'MBD3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
MBD3 MUTATED 2 2 2
MBD3 WILD-TYPE 16 22 12
'MBD3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.689 (Fisher's exact test), Q value = 1

Table S219.  Gene #28: 'MBD3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
MBD3 MUTATED 3 1 0 1
MBD3 WILD-TYPE 15 11 9 7
'MBD3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.771 (Fisher's exact test), Q value = 1

Table S220.  Gene #28: 'MBD3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
MBD3 MUTATED 0 3 2
MBD3 WILD-TYPE 4 15 23
'MBD3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.451 (Fisher's exact test), Q value = 1

Table S221.  Gene #28: 'MBD3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
MBD3 MUTATED 4 0 2
MBD3 WILD-TYPE 21 11 12
'MBD3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S222.  Gene #28: 'MBD3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
MBD3 MUTATED 1 2 3
MBD3 WILD-TYPE 7 17 20
'MBD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S223.  Gene #28: 'MBD3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
MBD3 MUTATED 3 1 2
MBD3 WILD-TYPE 18 8 18
'MBD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S224.  Gene #28: 'MBD3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
MBD3 MUTATED 1 3 2
MBD3 WILD-TYPE 8 19 17
'TULP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.238 (Fisher's exact test), Q value = 1

Table S225.  Gene #29: 'TULP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
TULP1 MUTATED 1 5 0
TULP1 WILD-TYPE 12 24 14
'TULP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.549 (Fisher's exact test), Q value = 1

Table S226.  Gene #29: 'TULP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
TULP1 MUTATED 1 4 1
TULP1 WILD-TYPE 17 20 13
'TULP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.227 (Fisher's exact test), Q value = 1

Table S227.  Gene #29: 'TULP1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
TULP1 MUTATED 1 1 3 1
TULP1 WILD-TYPE 17 11 6 7
'TULP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.423 (Fisher's exact test), Q value = 1

Table S228.  Gene #29: 'TULP1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
TULP1 MUTATED 0 1 5
TULP1 WILD-TYPE 4 17 20
'TULP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.057 (Fisher's exact test), Q value = 1

Table S229.  Gene #29: 'TULP1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
TULP1 MUTATED 1 1 4
TULP1 WILD-TYPE 24 10 10
'TULP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.115 (Fisher's exact test), Q value = 1

Table S230.  Gene #29: 'TULP1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
TULP1 MUTATED 3 1 2
TULP1 WILD-TYPE 5 18 21
'TULP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.272 (Fisher's exact test), Q value = 1

Table S231.  Gene #29: 'TULP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
TULP1 MUTATED 1 1 4
TULP1 WILD-TYPE 20 8 16
'TULP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00854 (Fisher's exact test), Q value = 1

Table S232.  Gene #29: 'TULP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
TULP1 MUTATED 4 1 1
TULP1 WILD-TYPE 5 21 18

Figure S14.  Get High-res Image Gene #29: 'TULP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'PHF13 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.66 (Fisher's exact test), Q value = 1

Table S233.  Gene #30: 'PHF13 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
PHF13 MUTATED 1 3 0
PHF13 WILD-TYPE 12 26 14
'PHF13 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0816 (Fisher's exact test), Q value = 1

Table S234.  Gene #30: 'PHF13 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
PHF13 MUTATED 0 4 0
PHF13 WILD-TYPE 18 20 14
'PHF13 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.236 (Fisher's exact test), Q value = 1

Table S235.  Gene #30: 'PHF13 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
PHF13 MUTATED 0 2 1 1
PHF13 WILD-TYPE 18 10 8 7
'PHF13 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.118 (Fisher's exact test), Q value = 1

Table S236.  Gene #30: 'PHF13 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
PHF13 MUTATED 1 0 3
PHF13 WILD-TYPE 3 18 22
'PHF13 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.323 (Fisher's exact test), Q value = 1

Table S237.  Gene #30: 'PHF13 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
PHF13 MUTATED 1 2 1
PHF13 WILD-TYPE 24 9 13
'PHF13 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.499 (Fisher's exact test), Q value = 1

Table S238.  Gene #30: 'PHF13 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
PHF13 MUTATED 1 2 1
PHF13 WILD-TYPE 7 17 22
'PHF13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0922 (Fisher's exact test), Q value = 1

Table S239.  Gene #30: 'PHF13 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
PHF13 MUTATED 0 2 2
PHF13 WILD-TYPE 21 7 18
'PHF13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.657 (Fisher's exact test), Q value = 1

Table S240.  Gene #30: 'PHF13 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
PHF13 MUTATED 1 1 2
PHF13 WILD-TYPE 8 21 17
'BHLHB9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.255 (Fisher's exact test), Q value = 1

Table S241.  Gene #31: 'BHLHB9 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
BHLHB9 MUTATED 2 1 2
BHLHB9 WILD-TYPE 11 28 12
'BHLHB9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0507 (Fisher's exact test), Q value = 1

Table S242.  Gene #31: 'BHLHB9 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
BHLHB9 MUTATED 2 0 3
BHLHB9 WILD-TYPE 16 24 11
'BHLHB9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.118 (Fisher's exact test), Q value = 1

Table S243.  Gene #31: 'BHLHB9 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
BHLHB9 MUTATED 4 0 0 0
BHLHB9 WILD-TYPE 14 12 9 8
'BHLHB9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0485 (Fisher's exact test), Q value = 1

Table S244.  Gene #31: 'BHLHB9 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
BHLHB9 MUTATED 0 4 0
BHLHB9 WILD-TYPE 4 14 25

Figure S15.  Get High-res Image Gene #31: 'BHLHB9 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'BHLHB9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0892 (Fisher's exact test), Q value = 1

Table S245.  Gene #31: 'BHLHB9 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
BHLHB9 MUTATED 5 0 0
BHLHB9 WILD-TYPE 20 11 14
'BHLHB9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.073 (Fisher's exact test), Q value = 1

Table S246.  Gene #31: 'BHLHB9 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
BHLHB9 MUTATED 0 0 5
BHLHB9 WILD-TYPE 8 19 18
'BHLHB9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0353 (Fisher's exact test), Q value = 1

Table S247.  Gene #31: 'BHLHB9 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
BHLHB9 MUTATED 5 0 0
BHLHB9 WILD-TYPE 16 9 20

Figure S16.  Get High-res Image Gene #31: 'BHLHB9 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'BHLHB9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0364 (Fisher's exact test), Q value = 1

Table S248.  Gene #31: 'BHLHB9 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
BHLHB9 MUTATED 0 5 0
BHLHB9 WILD-TYPE 9 17 19

Figure S17.  Get High-res Image Gene #31: 'BHLHB9 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'PRDM8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.238 (Fisher's exact test), Q value = 1

Table S249.  Gene #32: 'PRDM8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
PRDM8 MUTATED 1 5 0
PRDM8 WILD-TYPE 12 24 14
'PRDM8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.748 (Fisher's exact test), Q value = 1

Table S250.  Gene #32: 'PRDM8 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
PRDM8 MUTATED 1 3 2
PRDM8 WILD-TYPE 17 21 12
'PRDM8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.914 (Fisher's exact test), Q value = 1

Table S251.  Gene #32: 'PRDM8 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
PRDM8 MUTATED 2 2 1 0
PRDM8 WILD-TYPE 16 10 8 8
'PRDM8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S252.  Gene #32: 'PRDM8 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
PRDM8 MUTATED 0 2 3
PRDM8 WILD-TYPE 4 16 22
'PRDM8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.235 (Fisher's exact test), Q value = 1

Table S253.  Gene #32: 'PRDM8 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
PRDM8 MUTATED 2 3 1
PRDM8 WILD-TYPE 23 8 13
'PRDM8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0806 (Fisher's exact test), Q value = 1

Table S254.  Gene #32: 'PRDM8 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
PRDM8 MUTATED 0 5 1
PRDM8 WILD-TYPE 8 14 22
'PRDM8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.214 (Fisher's exact test), Q value = 1

Table S255.  Gene #32: 'PRDM8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
PRDM8 MUTATED 1 2 3
PRDM8 WILD-TYPE 20 7 17
'PRDM8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0729 (Fisher's exact test), Q value = 1

Table S256.  Gene #32: 'PRDM8 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
PRDM8 MUTATED 0 1 5
PRDM8 WILD-TYPE 9 21 14
'SMAD4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.113 (Fisher's exact test), Q value = 1

Table S257.  Gene #33: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
SMAD4 MUTATED 5 4 1
SMAD4 WILD-TYPE 8 25 13
'SMAD4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0402 (Fisher's exact test), Q value = 1

Table S258.  Gene #33: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
SMAD4 MUTATED 4 1 5
SMAD4 WILD-TYPE 14 23 9

Figure S18.  Get High-res Image Gene #33: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SMAD4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.235 (Fisher's exact test), Q value = 1

Table S259.  Gene #33: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
SMAD4 MUTATED 6 2 0 1
SMAD4 WILD-TYPE 12 10 9 7
'SMAD4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.182 (Fisher's exact test), Q value = 1

Table S260.  Gene #33: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
SMAD4 MUTATED 0 6 3
SMAD4 WILD-TYPE 4 12 22
'SMAD4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0725 (Fisher's exact test), Q value = 1

Table S261.  Gene #33: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
SMAD4 MUTATED 7 2 0
SMAD4 WILD-TYPE 18 9 14
'SMAD4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.335 (Fisher's exact test), Q value = 1

Table S262.  Gene #33: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
SMAD4 MUTATED 0 3 6
SMAD4 WILD-TYPE 8 16 17
'SMAD4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.134 (Fisher's exact test), Q value = 1

Table S263.  Gene #33: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
SMAD4 MUTATED 6 2 1
SMAD4 WILD-TYPE 15 7 19
'SMAD4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.209 (Fisher's exact test), Q value = 1

Table S264.  Gene #33: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
SMAD4 MUTATED 0 6 3
SMAD4 WILD-TYPE 9 16 16
'C14ORF43 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.655 (Fisher's exact test), Q value = 1

Table S265.  Gene #34: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
C14ORF43 MUTATED 1 5 1
C14ORF43 WILD-TYPE 12 24 13
'C14ORF43 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.145 (Fisher's exact test), Q value = 1

Table S266.  Gene #34: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
C14ORF43 MUTATED 1 2 4
C14ORF43 WILD-TYPE 17 22 10
'C14ORF43 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.355 (Fisher's exact test), Q value = 1

Table S267.  Gene #34: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
C14ORF43 MUTATED 2 1 1 3
C14ORF43 WILD-TYPE 16 11 8 5
'C14ORF43 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.584 (Fisher's exact test), Q value = 1

Table S268.  Gene #34: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
C14ORF43 MUTATED 1 3 3
C14ORF43 WILD-TYPE 3 15 22
'C14ORF43 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S269.  Gene #34: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
C14ORF43 MUTATED 4 1 2
C14ORF43 WILD-TYPE 21 10 12
'C14ORF43 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S270.  Gene #34: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
C14ORF43 MUTATED 1 3 3
C14ORF43 WILD-TYPE 7 16 20
'C14ORF43 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.578 (Fisher's exact test), Q value = 1

Table S271.  Gene #34: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
C14ORF43 MUTATED 2 2 3
C14ORF43 WILD-TYPE 19 7 17
'C14ORF43 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.658 (Fisher's exact test), Q value = 1

Table S272.  Gene #34: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
C14ORF43 MUTATED 2 2 3
C14ORF43 WILD-TYPE 7 20 16
'MEPCE MUTATION STATUS' versus 'CN_CNMF'

P value = 0.147 (Fisher's exact test), Q value = 1

Table S273.  Gene #35: 'MEPCE MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
MEPCE MUTATED 1 6 0
MEPCE WILD-TYPE 12 23 14
'MEPCE MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.592 (Fisher's exact test), Q value = 1

Table S274.  Gene #35: 'MEPCE MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
MEPCE MUTATED 1 4 2
MEPCE WILD-TYPE 17 20 12
'MEPCE MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.479 (Fisher's exact test), Q value = 1

Table S275.  Gene #35: 'MEPCE MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
MEPCE MUTATED 2 1 3 1
MEPCE WILD-TYPE 16 11 6 7
'MEPCE MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.836 (Fisher's exact test), Q value = 1

Table S276.  Gene #35: 'MEPCE MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
MEPCE MUTATED 0 2 5
MEPCE WILD-TYPE 4 16 20
'MEPCE MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.233 (Fisher's exact test), Q value = 1

Table S277.  Gene #35: 'MEPCE MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
MEPCE MUTATED 2 1 4
MEPCE WILD-TYPE 23 10 10
'MEPCE MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0603 (Fisher's exact test), Q value = 1

Table S278.  Gene #35: 'MEPCE MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
MEPCE MUTATED 3 3 1
MEPCE WILD-TYPE 5 16 22
'MEPCE MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.138 (Fisher's exact test), Q value = 1

Table S279.  Gene #35: 'MEPCE MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
MEPCE MUTATED 1 1 5
MEPCE WILD-TYPE 20 8 15
'MEPCE MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0871 (Fisher's exact test), Q value = 1

Table S280.  Gene #35: 'MEPCE MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
MEPCE MUTATED 3 1 3
MEPCE WILD-TYPE 6 21 16
'HVCN1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.66 (Fisher's exact test), Q value = 1

Table S281.  Gene #36: 'HVCN1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
HVCN1 MUTATED 1 3 0
HVCN1 WILD-TYPE 12 26 14
'HVCN1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S282.  Gene #36: 'HVCN1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
HVCN1 MUTATED 1 2 1
HVCN1 WILD-TYPE 17 22 13
'HVCN1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0397 (Fisher's exact test), Q value = 1

Table S283.  Gene #36: 'HVCN1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
HVCN1 MUTATED 1 0 3 0
HVCN1 WILD-TYPE 17 12 6 8

Figure S19.  Get High-res Image Gene #36: 'HVCN1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

'HVCN1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.743 (Fisher's exact test), Q value = 1

Table S284.  Gene #36: 'HVCN1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
HVCN1 MUTATED 0 1 3
HVCN1 WILD-TYPE 4 17 22
'HVCN1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 1

Table S285.  Gene #36: 'HVCN1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
HVCN1 MUTATED 1 0 3
HVCN1 WILD-TYPE 24 11 11
'HVCN1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0789 (Fisher's exact test), Q value = 1

Table S286.  Gene #36: 'HVCN1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
HVCN1 MUTATED 2 0 2
HVCN1 WILD-TYPE 6 19 21
'HVCN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.391 (Fisher's exact test), Q value = 1

Table S287.  Gene #36: 'HVCN1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
HVCN1 MUTATED 1 0 3
HVCN1 WILD-TYPE 20 9 17
'HVCN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0155 (Fisher's exact test), Q value = 1

Table S288.  Gene #36: 'HVCN1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
HVCN1 MUTATED 3 1 0
HVCN1 WILD-TYPE 6 21 19

Figure S20.  Get High-res Image Gene #36: 'HVCN1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'FOXP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.782 (Fisher's exact test), Q value = 1

Table S289.  Gene #37: 'FOXP2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
FOXP2 MUTATED 2 5 1
FOXP2 WILD-TYPE 11 24 13
'FOXP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.625 (Fisher's exact test), Q value = 1

Table S290.  Gene #37: 'FOXP2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
FOXP2 MUTATED 2 5 1
FOXP2 WILD-TYPE 16 19 13
'FOXP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.479 (Fisher's exact test), Q value = 1

Table S291.  Gene #37: 'FOXP2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
FOXP2 MUTATED 2 1 3 1
FOXP2 WILD-TYPE 16 11 6 7
'FOXP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.836 (Fisher's exact test), Q value = 1

Table S292.  Gene #37: 'FOXP2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
FOXP2 MUTATED 0 2 5
FOXP2 WILD-TYPE 4 16 20
'FOXP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0503 (Fisher's exact test), Q value = 1

Table S293.  Gene #37: 'FOXP2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
FOXP2 MUTATED 3 0 5
FOXP2 WILD-TYPE 22 11 9
'FOXP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.192 (Fisher's exact test), Q value = 1

Table S294.  Gene #37: 'FOXP2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
FOXP2 MUTATED 3 2 3
FOXP2 WILD-TYPE 5 17 20
'FOXP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.275 (Fisher's exact test), Q value = 1

Table S295.  Gene #37: 'FOXP2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
FOXP2 MUTATED 3 0 5
FOXP2 WILD-TYPE 18 9 15
'FOXP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.316 (Fisher's exact test), Q value = 1

Table S296.  Gene #37: 'FOXP2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
FOXP2 MUTATED 3 3 2
FOXP2 WILD-TYPE 6 19 17
'GRIN1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.41 (Fisher's exact test), Q value = 1

Table S297.  Gene #38: 'GRIN1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
GRIN1 MUTATED 1 4 0
GRIN1 WILD-TYPE 12 25 14
'GRIN1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.712 (Fisher's exact test), Q value = 1

Table S298.  Gene #38: 'GRIN1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
GRIN1 MUTATED 1 2 2
GRIN1 WILD-TYPE 17 22 12
'GRIN1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0932 (Fisher's exact test), Q value = 1

Table S299.  Gene #38: 'GRIN1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
GRIN1 MUTATED 2 0 3 0
GRIN1 WILD-TYPE 16 12 6 8
'GRIN1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S300.  Gene #38: 'GRIN1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
GRIN1 MUTATED 0 2 3
GRIN1 WILD-TYPE 4 16 22
'GRIN1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.215 (Fisher's exact test), Q value = 1

Table S301.  Gene #38: 'GRIN1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
GRIN1 MUTATED 2 0 3
GRIN1 WILD-TYPE 23 11 11
'GRIN1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S302.  Gene #38: 'GRIN1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
GRIN1 MUTATED 1 2 2
GRIN1 WILD-TYPE 7 17 21
'GRIN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.485 (Fisher's exact test), Q value = 1

Table S303.  Gene #38: 'GRIN1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
GRIN1 MUTATED 1 1 3
GRIN1 WILD-TYPE 20 8 17
'GRIN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.247 (Fisher's exact test), Q value = 1

Table S304.  Gene #38: 'GRIN1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
GRIN1 MUTATED 2 1 2
GRIN1 WILD-TYPE 7 21 17
'MAGEA10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.164 (Fisher's exact test), Q value = 1

Table S305.  Gene #39: 'MAGEA10 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
MAGEA10 MUTATED 0 4 0
MAGEA10 WILD-TYPE 13 25 14
'MAGEA10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.349 (Fisher's exact test), Q value = 1

Table S306.  Gene #39: 'MAGEA10 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
MAGEA10 MUTATED 0 3 1
MAGEA10 WILD-TYPE 18 21 13
'MAGEA10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0843 (Fisher's exact test), Q value = 1

Table S307.  Gene #39: 'MAGEA10 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
MAGEA10 MUTATED 0 2 2 0
MAGEA10 WILD-TYPE 18 10 7 8
'MAGEA10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.189 (Fisher's exact test), Q value = 1

Table S308.  Gene #39: 'MAGEA10 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
MAGEA10 MUTATED 0 0 4
MAGEA10 WILD-TYPE 4 18 21
'MAGEA10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0728 (Fisher's exact test), Q value = 1

Table S309.  Gene #39: 'MAGEA10 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
MAGEA10 MUTATED 0 2 2
MAGEA10 WILD-TYPE 25 9 12
'MAGEA10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.499 (Fisher's exact test), Q value = 1

Table S310.  Gene #39: 'MAGEA10 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
MAGEA10 MUTATED 1 2 1
MAGEA10 WILD-TYPE 7 17 22
'MAGEA10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.17 (Fisher's exact test), Q value = 1

Table S311.  Gene #39: 'MAGEA10 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
MAGEA10 MUTATED 0 1 3
MAGEA10 WILD-TYPE 21 8 17
'MAGEA10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0591 (Fisher's exact test), Q value = 1

Table S312.  Gene #39: 'MAGEA10 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
MAGEA10 MUTATED 2 0 2
MAGEA10 WILD-TYPE 7 22 17
'C16ORF79 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S313.  Gene #40: 'C16ORF79 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
C16ORF79 MUTATED 1 2 1
C16ORF79 WILD-TYPE 12 27 13
'C16ORF79 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S314.  Gene #40: 'C16ORF79 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
C16ORF79 MUTATED 1 2 1
C16ORF79 WILD-TYPE 17 22 13
'C16ORF79 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S315.  Gene #40: 'C16ORF79 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
C16ORF79 MUTATED 2 1 1 0
C16ORF79 WILD-TYPE 16 11 8 8
'C16ORF79 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S316.  Gene #40: 'C16ORF79 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
C16ORF79 MUTATED 0 2 2
C16ORF79 WILD-TYPE 4 16 23
'C16ORF79 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S317.  Gene #40: 'C16ORF79 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
C16ORF79 MUTATED 2 1 1
C16ORF79 WILD-TYPE 23 10 13
'C16ORF79 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S318.  Gene #40: 'C16ORF79 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
C16ORF79 MUTATED 0 2 2
C16ORF79 WILD-TYPE 8 17 21
'C16ORF79 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S319.  Gene #40: 'C16ORF79 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
C16ORF79 MUTATED 2 0 2
C16ORF79 WILD-TYPE 19 9 18
'C16ORF79 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S320.  Gene #40: 'C16ORF79 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
C16ORF79 MUTATED 0 2 2
C16ORF79 WILD-TYPE 9 20 17
'ERF MUTATION STATUS' versus 'CN_CNMF'

P value = 0.339 (Fisher's exact test), Q value = 1

Table S321.  Gene #41: 'ERF MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
ERF MUTATED 0 5 1
ERF WILD-TYPE 13 24 13
'ERF MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.182 (Fisher's exact test), Q value = 1

Table S322.  Gene #41: 'ERF MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
ERF MUTATED 0 4 2
ERF WILD-TYPE 18 20 12
'ERF MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.138 (Fisher's exact test), Q value = 1

Table S323.  Gene #41: 'ERF MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
ERF MUTATED 1 1 3 0
ERF WILD-TYPE 17 11 6 8
'ERF MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.611 (Fisher's exact test), Q value = 1

Table S324.  Gene #41: 'ERF MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
ERF MUTATED 0 1 4
ERF WILD-TYPE 4 17 21
'ERF MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0759 (Fisher's exact test), Q value = 1

Table S325.  Gene #41: 'ERF MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
ERF MUTATED 2 0 4
ERF WILD-TYPE 23 11 10
'ERF MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.154 (Fisher's exact test), Q value = 1

Table S326.  Gene #41: 'ERF MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
ERF MUTATED 2 3 1
ERF WILD-TYPE 6 16 22
'ERF MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.272 (Fisher's exact test), Q value = 1

Table S327.  Gene #41: 'ERF MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
ERF MUTATED 1 1 4
ERF WILD-TYPE 20 8 16
'ERF MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.261 (Fisher's exact test), Q value = 1

Table S328.  Gene #41: 'ERF MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
ERF MUTATED 2 1 3
ERF WILD-TYPE 7 21 16
'IFNGR2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.66 (Fisher's exact test), Q value = 1

Table S329.  Gene #42: 'IFNGR2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
IFNGR2 MUTATED 1 3 0
IFNGR2 WILD-TYPE 12 26 14
'IFNGR2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.272 (Fisher's exact test), Q value = 1

Table S330.  Gene #42: 'IFNGR2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
IFNGR2 MUTATED 0 2 2
IFNGR2 WILD-TYPE 18 22 12
'IFNGR2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.209 (Fisher's exact test), Q value = 1

Table S331.  Gene #42: 'IFNGR2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
IFNGR2 MUTATED 1 0 1 2
IFNGR2 WILD-TYPE 17 12 8 6
'IFNGR2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.511 (Fisher's exact test), Q value = 1

Table S332.  Gene #42: 'IFNGR2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
IFNGR2 MUTATED 1 1 2
IFNGR2 WILD-TYPE 3 17 23
'IFNGR2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.66 (Fisher's exact test), Q value = 1

Table S333.  Gene #42: 'IFNGR2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
IFNGR2 MUTATED 2 0 2
IFNGR2 WILD-TYPE 23 11 12
'IFNGR2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.499 (Fisher's exact test), Q value = 1

Table S334.  Gene #42: 'IFNGR2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
IFNGR2 MUTATED 1 2 1
IFNGR2 WILD-TYPE 7 17 22
'IFNGR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.663 (Fisher's exact test), Q value = 1

Table S335.  Gene #42: 'IFNGR2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
IFNGR2 MUTATED 1 1 2
IFNGR2 WILD-TYPE 20 8 18
'IFNGR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.657 (Fisher's exact test), Q value = 1

Table S336.  Gene #42: 'IFNGR2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
IFNGR2 MUTATED 1 1 2
IFNGR2 WILD-TYPE 8 21 17
'OLIG3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.7 (Fisher's exact test), Q value = 1

Table S337.  Gene #43: 'OLIG3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
OLIG3 MUTATED 2 2 1
OLIG3 WILD-TYPE 11 27 13
'OLIG3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.593 (Fisher's exact test), Q value = 1

Table S338.  Gene #43: 'OLIG3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
OLIG3 MUTATED 2 1 2
OLIG3 WILD-TYPE 16 23 12
'OLIG3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.181 (Fisher's exact test), Q value = 1

Table S339.  Gene #43: 'OLIG3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
OLIG3 MUTATED 4 0 0 1
OLIG3 WILD-TYPE 14 12 9 7
'OLIG3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0191 (Fisher's exact test), Q value = 1

Table S340.  Gene #43: 'OLIG3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
OLIG3 MUTATED 1 4 0
OLIG3 WILD-TYPE 3 14 25

Figure S21.  Get High-res Image Gene #43: 'OLIG3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'OLIG3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0892 (Fisher's exact test), Q value = 1

Table S341.  Gene #43: 'OLIG3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
OLIG3 MUTATED 5 0 0
OLIG3 WILD-TYPE 20 11 14
'OLIG3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.367 (Fisher's exact test), Q value = 1

Table S342.  Gene #43: 'OLIG3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
OLIG3 MUTATED 0 1 4
OLIG3 WILD-TYPE 8 18 19
'OLIG3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.114 (Fisher's exact test), Q value = 1

Table S343.  Gene #43: 'OLIG3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
OLIG3 MUTATED 3 2 0
OLIG3 WILD-TYPE 18 7 20
'OLIG3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.313 (Fisher's exact test), Q value = 1

Table S344.  Gene #43: 'OLIG3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
OLIG3 MUTATED 0 4 1
OLIG3 WILD-TYPE 9 18 18
'NDEL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.66 (Fisher's exact test), Q value = 1

Table S345.  Gene #44: 'NDEL1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
NDEL1 MUTATED 1 3 0
NDEL1 WILD-TYPE 12 26 14
'NDEL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S346.  Gene #44: 'NDEL1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
NDEL1 MUTATED 1 2 1
NDEL1 WILD-TYPE 17 22 13
'NDEL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0397 (Fisher's exact test), Q value = 1

Table S347.  Gene #44: 'NDEL1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
NDEL1 MUTATED 1 0 3 0
NDEL1 WILD-TYPE 17 12 6 8

Figure S22.  Get High-res Image Gene #44: 'NDEL1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

'NDEL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.743 (Fisher's exact test), Q value = 1

Table S348.  Gene #44: 'NDEL1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
NDEL1 MUTATED 0 1 3
NDEL1 WILD-TYPE 4 17 22
'NDEL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 1

Table S349.  Gene #44: 'NDEL1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
NDEL1 MUTATED 1 0 3
NDEL1 WILD-TYPE 24 11 11
'NDEL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.812 (Fisher's exact test), Q value = 1

Table S350.  Gene #44: 'NDEL1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
NDEL1 MUTATED 1 1 2
NDEL1 WILD-TYPE 7 18 21
'NDEL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.391 (Fisher's exact test), Q value = 1

Table S351.  Gene #44: 'NDEL1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
NDEL1 MUTATED 1 0 3
NDEL1 WILD-TYPE 20 9 17
'NDEL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.29 (Fisher's exact test), Q value = 1

Table S352.  Gene #44: 'NDEL1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
NDEL1 MUTATED 2 1 1
NDEL1 WILD-TYPE 7 21 18
'EGR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.691 (Fisher's exact test), Q value = 1

Table S353.  Gene #45: 'EGR1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
EGR1 MUTATED 1 4 3
EGR1 WILD-TYPE 12 25 11
'EGR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.705 (Fisher's exact test), Q value = 1

Table S354.  Gene #45: 'EGR1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
EGR1 MUTATED 2 3 3
EGR1 WILD-TYPE 16 21 11
'EGR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.817 (Fisher's exact test), Q value = 1

Table S355.  Gene #45: 'EGR1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
EGR1 MUTATED 3 2 1 0
EGR1 WILD-TYPE 15 10 8 8
'EGR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.82 (Fisher's exact test), Q value = 1

Table S356.  Gene #45: 'EGR1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
EGR1 MUTATED 0 3 3
EGR1 WILD-TYPE 4 15 22
'EGR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.462 (Fisher's exact test), Q value = 1

Table S357.  Gene #45: 'EGR1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
EGR1 MUTATED 4 3 1
EGR1 WILD-TYPE 21 8 13
'EGR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.872 (Fisher's exact test), Q value = 1

Table S358.  Gene #45: 'EGR1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
EGR1 MUTATED 1 4 3
EGR1 WILD-TYPE 7 15 20
'EGR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.315 (Fisher's exact test), Q value = 1

Table S359.  Gene #45: 'EGR1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
EGR1 MUTATED 3 3 2
EGR1 WILD-TYPE 18 6 18
'EGR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.881 (Fisher's exact test), Q value = 1

Table S360.  Gene #45: 'EGR1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
EGR1 MUTATED 1 3 4
EGR1 WILD-TYPE 8 19 15
'CDH3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.799 (Fisher's exact test), Q value = 1

Table S361.  Gene #46: 'CDH3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
CDH3 MUTATED 0 3 1
CDH3 WILD-TYPE 13 26 13
'CDH3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.272 (Fisher's exact test), Q value = 1

Table S362.  Gene #46: 'CDH3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
CDH3 MUTATED 0 2 2
CDH3 WILD-TYPE 18 22 12
'CDH3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0222 (Fisher's exact test), Q value = 1

Table S363.  Gene #46: 'CDH3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
CDH3 MUTATED 0 3 0 0
CDH3 WILD-TYPE 18 9 9 8

Figure S23.  Get High-res Image Gene #46: 'CDH3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

'CDH3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.431 (Fisher's exact test), Q value = 1

Table S364.  Gene #46: 'CDH3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
CDH3 MUTATED 0 0 3
CDH3 WILD-TYPE 4 18 22
'CDH3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0511 (Fisher's exact test), Q value = 1

Table S365.  Gene #46: 'CDH3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
CDH3 MUTATED 1 3 0
CDH3 WILD-TYPE 24 8 14
'CDH3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.362 (Fisher's exact test), Q value = 1

Table S366.  Gene #46: 'CDH3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
CDH3 MUTATED 0 3 1
CDH3 WILD-TYPE 8 16 22
'CDH3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.391 (Fisher's exact test), Q value = 1

Table S367.  Gene #46: 'CDH3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
CDH3 MUTATED 1 0 3
CDH3 WILD-TYPE 20 9 17
'CDH3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.383 (Fisher's exact test), Q value = 1

Table S368.  Gene #46: 'CDH3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
CDH3 MUTATED 0 1 3
CDH3 WILD-TYPE 9 21 16
'PCDHAC2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.272 (Fisher's exact test), Q value = 1

Table S369.  Gene #47: 'PCDHAC2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
PCDHAC2 MUTATED 4 3 2
PCDHAC2 WILD-TYPE 9 26 12
'PCDHAC2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0367 (Fisher's exact test), Q value = 1

Table S370.  Gene #47: 'PCDHAC2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
PCDHAC2 MUTATED 6 1 2
PCDHAC2 WILD-TYPE 12 23 12

Figure S24.  Get High-res Image Gene #47: 'PCDHAC2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PCDHAC2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.82 (Fisher's exact test), Q value = 1

Table S371.  Gene #47: 'PCDHAC2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
PCDHAC2 MUTATED 4 1 2 1
PCDHAC2 WILD-TYPE 14 11 7 7
'PCDHAC2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.329 (Fisher's exact test), Q value = 1

Table S372.  Gene #47: 'PCDHAC2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
PCDHAC2 MUTATED 0 5 3
PCDHAC2 WILD-TYPE 4 13 22
'PCDHAC2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.882 (Fisher's exact test), Q value = 1

Table S373.  Gene #47: 'PCDHAC2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
PCDHAC2 MUTATED 5 1 2
PCDHAC2 WILD-TYPE 20 10 12
'PCDHAC2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S374.  Gene #47: 'PCDHAC2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
PCDHAC2 MUTATED 1 3 4
PCDHAC2 WILD-TYPE 7 16 19
'PCDHAC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.676 (Fisher's exact test), Q value = 1

Table S375.  Gene #47: 'PCDHAC2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
PCDHAC2 MUTATED 4 2 2
PCDHAC2 WILD-TYPE 17 7 18
'PCDHAC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S376.  Gene #47: 'PCDHAC2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
PCDHAC2 MUTATED 1 4 3
PCDHAC2 WILD-TYPE 8 18 16
'ZFP36 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.799 (Fisher's exact test), Q value = 1

Table S377.  Gene #48: 'ZFP36 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
ZFP36 MUTATED 0 3 1
ZFP36 WILD-TYPE 13 26 13
'ZFP36 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.349 (Fisher's exact test), Q value = 1

Table S378.  Gene #48: 'ZFP36 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
ZFP36 MUTATED 0 3 1
ZFP36 WILD-TYPE 18 21 13
'ZFP36 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 1

Table S379.  Gene #48: 'ZFP36 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
ZFP36 MUTATED 0 1 2 0
ZFP36 WILD-TYPE 18 11 7 8
'ZFP36 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.431 (Fisher's exact test), Q value = 1

Table S380.  Gene #48: 'ZFP36 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
ZFP36 MUTATED 0 0 3
ZFP36 WILD-TYPE 4 18 22
'ZFP36 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.431 (Fisher's exact test), Q value = 1

Table S381.  Gene #48: 'ZFP36 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
ZFP36 MUTATED 1 1 2
ZFP36 WILD-TYPE 24 10 12
'ZFP36 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.362 (Fisher's exact test), Q value = 1

Table S382.  Gene #48: 'ZFP36 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
ZFP36 MUTATED 0 3 1
ZFP36 WILD-TYPE 8 16 22
'ZFP36 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.391 (Fisher's exact test), Q value = 1

Table S383.  Gene #48: 'ZFP36 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
ZFP36 MUTATED 1 0 3
ZFP36 WILD-TYPE 20 9 17
'ZFP36 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.383 (Fisher's exact test), Q value = 1

Table S384.  Gene #48: 'ZFP36 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
ZFP36 MUTATED 0 1 3
ZFP36 WILD-TYPE 9 21 16
'NR4A3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.329 (Fisher's exact test), Q value = 1

Table S385.  Gene #49: 'NR4A3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
NR4A3 MUTATED 2 3 0
NR4A3 WILD-TYPE 11 26 14
'NR4A3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0507 (Fisher's exact test), Q value = 1

Table S386.  Gene #49: 'NR4A3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
NR4A3 MUTATED 2 0 3
NR4A3 WILD-TYPE 16 24 11
'NR4A3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.855 (Fisher's exact test), Q value = 1

Table S387.  Gene #49: 'NR4A3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
NR4A3 MUTATED 3 1 1 0
NR4A3 WILD-TYPE 15 11 8 8
'NR4A3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.771 (Fisher's exact test), Q value = 1

Table S388.  Gene #49: 'NR4A3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
NR4A3 MUTATED 0 3 2
NR4A3 WILD-TYPE 4 15 23
'NR4A3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S389.  Gene #49: 'NR4A3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
NR4A3 MUTATED 3 1 1
NR4A3 WILD-TYPE 22 10 13
'NR4A3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.837 (Fisher's exact test), Q value = 1

Table S390.  Gene #49: 'NR4A3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
NR4A3 MUTATED 0 2 3
NR4A3 WILD-TYPE 8 17 20
'NR4A3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S391.  Gene #49: 'NR4A3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
NR4A3 MUTATED 2 1 2
NR4A3 WILD-TYPE 19 8 18
'NR4A3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S392.  Gene #49: 'NR4A3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
NR4A3 MUTATED 1 2 2
NR4A3 WILD-TYPE 8 20 17
'RAB11FIP5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.584 (Fisher's exact test), Q value = 1

Table S393.  Gene #50: 'RAB11FIP5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
RAB11FIP5 MUTATED 0 3 2
RAB11FIP5 WILD-TYPE 13 26 12
'RAB11FIP5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.244 (Fisher's exact test), Q value = 1

Table S394.  Gene #50: 'RAB11FIP5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
RAB11FIP5 MUTATED 0 3 2
RAB11FIP5 WILD-TYPE 18 21 12
'RAB11FIP5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.451 (Fisher's exact test), Q value = 1

Table S395.  Gene #50: 'RAB11FIP5 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
RAB11FIP5 MUTATED 1 1 2 0
RAB11FIP5 WILD-TYPE 17 11 7 8
'RAB11FIP5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.743 (Fisher's exact test), Q value = 1

Table S396.  Gene #50: 'RAB11FIP5 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
RAB11FIP5 MUTATED 0 1 3
RAB11FIP5 WILD-TYPE 4 17 22
'RAB11FIP5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.833 (Fisher's exact test), Q value = 1

Table S397.  Gene #50: 'RAB11FIP5 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
RAB11FIP5 MUTATED 2 1 2
RAB11FIP5 WILD-TYPE 23 10 12
'RAB11FIP5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S398.  Gene #50: 'RAB11FIP5 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
RAB11FIP5 MUTATED 1 2 2
RAB11FIP5 WILD-TYPE 7 17 21
'RAB11FIP5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.711 (Fisher's exact test), Q value = 1

Table S399.  Gene #50: 'RAB11FIP5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
RAB11FIP5 MUTATED 2 0 3
RAB11FIP5 WILD-TYPE 19 9 17
'RAB11FIP5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S400.  Gene #50: 'RAB11FIP5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
RAB11FIP5 MUTATED 1 2 2
RAB11FIP5 WILD-TYPE 8 20 17
'OTUD4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.205 (Fisher's exact test), Q value = 1

Table S401.  Gene #51: 'OTUD4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
OTUD4 MUTATED 3 4 0
OTUD4 WILD-TYPE 10 25 14
'OTUD4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S402.  Gene #51: 'OTUD4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
OTUD4 MUTATED 2 3 2
OTUD4 WILD-TYPE 16 21 12
'OTUD4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.298 (Fisher's exact test), Q value = 1

Table S403.  Gene #51: 'OTUD4 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
OTUD4 MUTATED 3 1 3 0
OTUD4 WILD-TYPE 15 11 6 8
'OTUD4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S404.  Gene #51: 'OTUD4 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
OTUD4 MUTATED 0 3 4
OTUD4 WILD-TYPE 4 15 21
'OTUD4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.66 (Fisher's exact test), Q value = 1

Table S405.  Gene #51: 'OTUD4 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
OTUD4 MUTATED 3 1 3
OTUD4 WILD-TYPE 22 10 11
'OTUD4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S406.  Gene #51: 'OTUD4 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
OTUD4 MUTATED 1 3 3
OTUD4 WILD-TYPE 7 16 20
'OTUD4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.761 (Fisher's exact test), Q value = 1

Table S407.  Gene #51: 'OTUD4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
OTUD4 MUTATED 2 1 4
OTUD4 WILD-TYPE 19 8 16
'OTUD4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.658 (Fisher's exact test), Q value = 1

Table S408.  Gene #51: 'OTUD4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
OTUD4 MUTATED 2 2 3
OTUD4 WILD-TYPE 7 20 16
'PPARGC1B MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S409.  Gene #52: 'PPARGC1B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
PPARGC1B MUTATED 1 4 1
PPARGC1B WILD-TYPE 12 25 13
'PPARGC1B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.592 (Fisher's exact test), Q value = 1

Table S410.  Gene #52: 'PPARGC1B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
PPARGC1B MUTATED 1 4 2
PPARGC1B WILD-TYPE 17 20 12
'PPARGC1B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.938 (Fisher's exact test), Q value = 1

Table S411.  Gene #52: 'PPARGC1B MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
PPARGC1B MUTATED 2 2 2 1
PPARGC1B WILD-TYPE 16 10 7 7
'PPARGC1B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.707 (Fisher's exact test), Q value = 1

Table S412.  Gene #52: 'PPARGC1B MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
PPARGC1B MUTATED 1 2 4
PPARGC1B WILD-TYPE 3 16 21
'PPARGC1B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.873 (Fisher's exact test), Q value = 1

Table S413.  Gene #52: 'PPARGC1B MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
PPARGC1B MUTATED 3 2 2
PPARGC1B WILD-TYPE 22 9 12
'PPARGC1B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.492 (Fisher's exact test), Q value = 1

Table S414.  Gene #52: 'PPARGC1B MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
PPARGC1B MUTATED 0 4 3
PPARGC1B WILD-TYPE 8 15 20
'PPARGC1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.086 (Fisher's exact test), Q value = 1

Table S415.  Gene #52: 'PPARGC1B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
PPARGC1B MUTATED 1 3 3
PPARGC1B WILD-TYPE 20 6 17
'PPARGC1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.658 (Fisher's exact test), Q value = 1

Table S416.  Gene #52: 'PPARGC1B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
PPARGC1B MUTATED 1 2 4
PPARGC1B WILD-TYPE 8 20 15
'PDZD2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.57 (Fisher's exact test), Q value = 1

Table S417.  Gene #53: 'PDZD2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
PDZD2 MUTATED 2 6 1
PDZD2 WILD-TYPE 11 23 13
'PDZD2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.462 (Fisher's exact test), Q value = 1

Table S418.  Gene #53: 'PDZD2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
PDZD2 MUTATED 2 3 4
PDZD2 WILD-TYPE 16 21 10
'PDZD2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.513 (Fisher's exact test), Q value = 1

Table S419.  Gene #53: 'PDZD2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
PDZD2 MUTATED 2 3 3 1
PDZD2 WILD-TYPE 16 9 6 7
'PDZD2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.534 (Fisher's exact test), Q value = 1

Table S420.  Gene #53: 'PDZD2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
PDZD2 MUTATED 1 2 6
PDZD2 WILD-TYPE 3 16 19
'PDZD2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.506 (Fisher's exact test), Q value = 1

Table S421.  Gene #53: 'PDZD2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
PDZD2 MUTATED 3 3 3
PDZD2 WILD-TYPE 22 8 11
'PDZD2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.191 (Fisher's exact test), Q value = 1

Table S422.  Gene #53: 'PDZD2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
PDZD2 MUTATED 1 6 2
PDZD2 WILD-TYPE 7 13 21
'PDZD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0688 (Fisher's exact test), Q value = 1

Table S423.  Gene #53: 'PDZD2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
PDZD2 MUTATED 1 3 5
PDZD2 WILD-TYPE 20 6 15
'PDZD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0558 (Fisher's exact test), Q value = 1

Table S424.  Gene #53: 'PDZD2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
PDZD2 MUTATED 2 1 6
PDZD2 WILD-TYPE 7 21 13
'NPNT MUTATION STATUS' versus 'CN_CNMF'

P value = 0.336 (Fisher's exact test), Q value = 1

Table S425.  Gene #54: 'NPNT MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
NPNT MUTATED 2 2 0
NPNT WILD-TYPE 11 27 14
'NPNT MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S426.  Gene #54: 'NPNT MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
NPNT MUTATED 1 2 1
NPNT WILD-TYPE 17 22 13
'NPNT MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.738 (Fisher's exact test), Q value = 1

Table S427.  Gene #54: 'NPNT MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
NPNT MUTATED 2 0 1 1
NPNT WILD-TYPE 16 12 8 7
'NPNT MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.743 (Fisher's exact test), Q value = 1

Table S428.  Gene #54: 'NPNT MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
NPNT MUTATED 0 1 3
NPNT WILD-TYPE 4 17 22
'NPNT MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.66 (Fisher's exact test), Q value = 1

Table S429.  Gene #54: 'NPNT MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
NPNT MUTATED 2 0 2
NPNT WILD-TYPE 23 11 12
'NPNT MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.812 (Fisher's exact test), Q value = 1

Table S430.  Gene #54: 'NPNT MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
NPNT MUTATED 1 1 2
NPNT WILD-TYPE 7 18 21
'NPNT MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S431.  Gene #54: 'NPNT MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
NPNT MUTATED 2 0 2
NPNT WILD-TYPE 19 9 18
'NPNT MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S432.  Gene #54: 'NPNT MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
NPNT MUTATED 1 2 1
NPNT WILD-TYPE 8 20 18
'MED9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.282 (Fisher's exact test), Q value = 1

Table S433.  Gene #55: 'MED9 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
MED9 MUTATED 0 1 2
MED9 WILD-TYPE 13 28 12
'MED9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0131 (Fisher's exact test), Q value = 1

Table S434.  Gene #55: 'MED9 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
MED9 MUTATED 0 0 3
MED9 WILD-TYPE 18 24 11

Figure S25.  Get High-res Image Gene #55: 'MED9 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'MED9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.589 (Fisher's exact test), Q value = 1

Table S435.  Gene #55: 'MED9 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
MED9 MUTATED 2 1 0
MED9 WILD-TYPE 23 10 14
'MED9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S436.  Gene #55: 'MED9 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
MED9 MUTATED 0 1 2
MED9 WILD-TYPE 8 18 21
'MED9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S437.  Gene #55: 'MED9 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
MED9 MUTATED 2 0 1
MED9 WILD-TYPE 19 9 19
'MED9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S438.  Gene #55: 'MED9 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
MED9 MUTATED 0 2 1
MED9 WILD-TYPE 9 20 18
'BCL2L1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.795 (Fisher's exact test), Q value = 1

Table S439.  Gene #56: 'BCL2L1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
BCL2L1 MUTATED 1 2 0
BCL2L1 WILD-TYPE 12 27 14
'BCL2L1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.782 (Fisher's exact test), Q value = 1

Table S440.  Gene #56: 'BCL2L1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
BCL2L1 MUTATED 1 2 0
BCL2L1 WILD-TYPE 17 22 14
'BCL2L1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.767 (Fisher's exact test), Q value = 1

Table S441.  Gene #56: 'BCL2L1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
BCL2L1 MUTATED 1 1 0 1
BCL2L1 WILD-TYPE 17 11 9 7
'BCL2L1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.289 (Fisher's exact test), Q value = 1

Table S442.  Gene #56: 'BCL2L1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
BCL2L1 MUTATED 1 1 1
BCL2L1 WILD-TYPE 3 17 24
'BCL2L1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.589 (Fisher's exact test), Q value = 1

Table S443.  Gene #56: 'BCL2L1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
BCL2L1 MUTATED 2 1 0
BCL2L1 WILD-TYPE 23 10 14
'BCL2L1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S444.  Gene #56: 'BCL2L1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
BCL2L1 MUTATED 0 1 2
BCL2L1 WILD-TYPE 8 18 21
'BCL2L1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.582 (Fisher's exact test), Q value = 1

Table S445.  Gene #56: 'BCL2L1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
BCL2L1 MUTATED 1 1 1
BCL2L1 WILD-TYPE 20 8 19
'BCL2L1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S446.  Gene #56: 'BCL2L1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
BCL2L1 MUTATED 0 2 1
BCL2L1 WILD-TYPE 9 20 18
'CPLX3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.414 (Fisher's exact test), Q value = 1

Table S447.  Gene #57: 'CPLX3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
CPLX3 MUTATED 0 3 0
CPLX3 WILD-TYPE 13 26 14
'CPLX3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.603 (Fisher's exact test), Q value = 1

Table S448.  Gene #57: 'CPLX3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
CPLX3 MUTATED 0 2 1
CPLX3 WILD-TYPE 18 22 13
'CPLX3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.203 (Fisher's exact test), Q value = 1

Table S449.  Gene #57: 'CPLX3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
CPLX3 MUTATED 0 2 1 0
CPLX3 WILD-TYPE 18 10 8 8
'CPLX3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.431 (Fisher's exact test), Q value = 1

Table S450.  Gene #57: 'CPLX3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
CPLX3 MUTATED 0 0 3
CPLX3 WILD-TYPE 4 18 22
'CPLX3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0663 (Fisher's exact test), Q value = 1

Table S451.  Gene #57: 'CPLX3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
CPLX3 MUTATED 0 2 1
CPLX3 WILD-TYPE 25 9 13
'CPLX3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.112 (Fisher's exact test), Q value = 1

Table S452.  Gene #57: 'CPLX3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
CPLX3 MUTATED 0 3 0
CPLX3 WILD-TYPE 8 16 23
'CPLX3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.138 (Fisher's exact test), Q value = 1

Table S453.  Gene #57: 'CPLX3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
CPLX3 MUTATED 0 0 3
CPLX3 WILD-TYPE 21 9 17
'CPLX3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.129 (Fisher's exact test), Q value = 1

Table S454.  Gene #57: 'CPLX3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
CPLX3 MUTATED 0 0 3
CPLX3 WILD-TYPE 9 22 16
'IRX4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.795 (Fisher's exact test), Q value = 1

Table S455.  Gene #58: 'IRX4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
IRX4 MUTATED 1 2 0
IRX4 WILD-TYPE 12 27 14
'IRX4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.782 (Fisher's exact test), Q value = 1

Table S456.  Gene #58: 'IRX4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
IRX4 MUTATED 1 2 0
IRX4 WILD-TYPE 17 22 14
'IRX4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.243 (Fisher's exact test), Q value = 1

Table S457.  Gene #58: 'IRX4 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
IRX4 MUTATED 1 0 2 0
IRX4 WILD-TYPE 17 12 7 8
'IRX4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S458.  Gene #58: 'IRX4 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
IRX4 MUTATED 0 1 2
IRX4 WILD-TYPE 4 17 23
'IRX4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.304 (Fisher's exact test), Q value = 1

Table S459.  Gene #58: 'IRX4 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
IRX4 MUTATED 1 0 2
IRX4 WILD-TYPE 24 11 12
'IRX4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.554 (Fisher's exact test), Q value = 1

Table S460.  Gene #58: 'IRX4 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
IRX4 MUTATED 1 1 1
IRX4 WILD-TYPE 7 18 22
'IRX4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.786 (Fisher's exact test), Q value = 1

Table S461.  Gene #58: 'IRX4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
IRX4 MUTATED 1 0 2
IRX4 WILD-TYPE 20 9 18
'IRX4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.776 (Fisher's exact test), Q value = 1

Table S462.  Gene #58: 'IRX4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
IRX4 MUTATED 1 1 1
IRX4 WILD-TYPE 8 21 18
'NFAT5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.782 (Fisher's exact test), Q value = 1

Table S463.  Gene #59: 'NFAT5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
NFAT5 MUTATED 2 5 1
NFAT5 WILD-TYPE 11 24 13
'NFAT5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.388 (Fisher's exact test), Q value = 1

Table S464.  Gene #59: 'NFAT5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
NFAT5 MUTATED 1 4 3
NFAT5 WILD-TYPE 17 20 11
'NFAT5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.567 (Fisher's exact test), Q value = 1

Table S465.  Gene #59: 'NFAT5 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
NFAT5 MUTATED 3 1 3 1
NFAT5 WILD-TYPE 15 11 6 7
'NFAT5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.862 (Fisher's exact test), Q value = 1

Table S466.  Gene #59: 'NFAT5 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
NFAT5 MUTATED 1 3 4
NFAT5 WILD-TYPE 3 15 21
'NFAT5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.783 (Fisher's exact test), Q value = 1

Table S467.  Gene #59: 'NFAT5 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
NFAT5 MUTATED 4 1 3
NFAT5 WILD-TYPE 21 10 11
'NFAT5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.516 (Fisher's exact test), Q value = 1

Table S468.  Gene #59: 'NFAT5 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
NFAT5 MUTATED 0 4 4
NFAT5 WILD-TYPE 8 15 19
'NFAT5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.886 (Fisher's exact test), Q value = 1

Table S469.  Gene #59: 'NFAT5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
NFAT5 MUTATED 3 1 4
NFAT5 WILD-TYPE 18 8 16
'NFAT5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.881 (Fisher's exact test), Q value = 1

Table S470.  Gene #59: 'NFAT5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
NFAT5 MUTATED 1 3 4
NFAT5 WILD-TYPE 8 19 15
'WASF3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.584 (Fisher's exact test), Q value = 1

Table S471.  Gene #60: 'WASF3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
WASF3 MUTATED 0 3 2
WASF3 WILD-TYPE 13 26 12
'WASF3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.244 (Fisher's exact test), Q value = 1

Table S472.  Gene #60: 'WASF3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
WASF3 MUTATED 0 3 2
WASF3 WILD-TYPE 18 21 12
'WASF3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.209 (Fisher's exact test), Q value = 1

Table S473.  Gene #60: 'WASF3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
WASF3 MUTATED 1 0 1 2
WASF3 WILD-TYPE 17 12 8 6
'WASF3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.511 (Fisher's exact test), Q value = 1

Table S474.  Gene #60: 'WASF3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
WASF3 MUTATED 1 1 2
WASF3 WILD-TYPE 3 17 23
'WASF3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.582 (Fisher's exact test), Q value = 1

Table S475.  Gene #60: 'WASF3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
WASF3 MUTATED 3 0 2
WASF3 WILD-TYPE 22 11 12
'WASF3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.694 (Fisher's exact test), Q value = 1

Table S476.  Gene #60: 'WASF3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
WASF3 MUTATED 1 1 3
WASF3 WILD-TYPE 7 18 20
'WASF3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S477.  Gene #60: 'WASF3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
WASF3 MUTATED 2 1 2
WASF3 WILD-TYPE 19 8 18
'WASF3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.832 (Fisher's exact test), Q value = 1

Table S478.  Gene #60: 'WASF3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
WASF3 MUTATED 1 3 1
WASF3 WILD-TYPE 8 19 18
'ABCC2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.238 (Fisher's exact test), Q value = 1

Table S479.  Gene #61: 'ABCC2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
ABCC2 MUTATED 1 5 0
ABCC2 WILD-TYPE 12 24 14
'ABCC2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.182 (Fisher's exact test), Q value = 1

Table S480.  Gene #61: 'ABCC2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
ABCC2 MUTATED 0 4 2
ABCC2 WILD-TYPE 18 20 12
'ABCC2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.255 (Fisher's exact test), Q value = 1

Table S481.  Gene #61: 'ABCC2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
ABCC2 MUTATED 2 1 3 0
ABCC2 WILD-TYPE 16 11 6 8
'ABCC2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.423 (Fisher's exact test), Q value = 1

Table S482.  Gene #61: 'ABCC2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
ABCC2 MUTATED 0 1 5
ABCC2 WILD-TYPE 4 17 20
'ABCC2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.527 (Fisher's exact test), Q value = 1

Table S483.  Gene #61: 'ABCC2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
ABCC2 MUTATED 2 1 3
ABCC2 WILD-TYPE 23 10 11
'ABCC2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.154 (Fisher's exact test), Q value = 1

Table S484.  Gene #61: 'ABCC2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
ABCC2 MUTATED 2 3 1
ABCC2 WILD-TYPE 6 16 22
'ABCC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.272 (Fisher's exact test), Q value = 1

Table S485.  Gene #61: 'ABCC2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
ABCC2 MUTATED 1 1 4
ABCC2 WILD-TYPE 20 8 16
'ABCC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.261 (Fisher's exact test), Q value = 1

Table S486.  Gene #61: 'ABCC2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
ABCC2 MUTATED 2 1 3
ABCC2 WILD-TYPE 7 21 16
'ATP13A3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.53 (Fisher's exact test), Q value = 1

Table S487.  Gene #62: 'ATP13A3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
ATP13A3 MUTATED 0 2 2
ATP13A3 WILD-TYPE 13 27 12
'ATP13A3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.272 (Fisher's exact test), Q value = 1

Table S488.  Gene #62: 'ATP13A3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
ATP13A3 MUTATED 0 2 2
ATP13A3 WILD-TYPE 18 22 12
'ATP13A3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S489.  Gene #62: 'ATP13A3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
ATP13A3 MUTATED 1 1 1 0
ATP13A3 WILD-TYPE 17 11 8 8
'ATP13A3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S490.  Gene #62: 'ATP13A3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
ATP13A3 MUTATED 0 1 2
ATP13A3 WILD-TYPE 4 17 23
'ATP13A3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S491.  Gene #62: 'ATP13A3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
ATP13A3 MUTATED 2 1 1
ATP13A3 WILD-TYPE 23 10 13
'ATP13A3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S492.  Gene #62: 'ATP13A3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
ATP13A3 MUTATED 0 2 2
ATP13A3 WILD-TYPE 8 17 21
'ATP13A3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.827 (Fisher's exact test), Q value = 1

Table S493.  Gene #62: 'ATP13A3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
ATP13A3 MUTATED 2 1 1
ATP13A3 WILD-TYPE 19 8 19
'ATP13A3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S494.  Gene #62: 'ATP13A3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
ATP13A3 MUTATED 0 2 2
ATP13A3 WILD-TYPE 9 20 17
'ARHGAP18 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.414 (Fisher's exact test), Q value = 1

Table S495.  Gene #63: 'ARHGAP18 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
ARHGAP18 MUTATED 0 3 0
ARHGAP18 WILD-TYPE 13 26 14
'ARHGAP18 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.349 (Fisher's exact test), Q value = 1

Table S496.  Gene #63: 'ARHGAP18 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
ARHGAP18 MUTATED 0 3 1
ARHGAP18 WILD-TYPE 18 21 13
'ARHGAP18 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.071 (Fisher's exact test), Q value = 1

Table S497.  Gene #63: 'ARHGAP18 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
ARHGAP18 MUTATED 0 3 1 0
ARHGAP18 WILD-TYPE 18 9 8 8
'ARHGAP18 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.189 (Fisher's exact test), Q value = 1

Table S498.  Gene #63: 'ARHGAP18 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
ARHGAP18 MUTATED 0 0 4
ARHGAP18 WILD-TYPE 4 18 21
'ARHGAP18 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0728 (Fisher's exact test), Q value = 1

Table S499.  Gene #63: 'ARHGAP18 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
ARHGAP18 MUTATED 0 2 2
ARHGAP18 WILD-TYPE 25 9 12
'ARHGAP18 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.362 (Fisher's exact test), Q value = 1

Table S500.  Gene #63: 'ARHGAP18 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
ARHGAP18 MUTATED 0 3 1
ARHGAP18 WILD-TYPE 8 16 22
'ARHGAP18 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.17 (Fisher's exact test), Q value = 1

Table S501.  Gene #63: 'ARHGAP18 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
ARHGAP18 MUTATED 0 1 3
ARHGAP18 WILD-TYPE 21 8 17
'ARHGAP18 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.165 (Fisher's exact test), Q value = 1

Table S502.  Gene #63: 'ARHGAP18 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
ARHGAP18 MUTATED 1 0 3
ARHGAP18 WILD-TYPE 8 22 16
'CIR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S503.  Gene #64: 'CIR1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
CIR1 MUTATED 0 2 1
CIR1 WILD-TYPE 13 27 13
'CIR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.603 (Fisher's exact test), Q value = 1

Table S504.  Gene #64: 'CIR1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
CIR1 MUTATED 0 2 1
CIR1 WILD-TYPE 18 22 13
'CIR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.188 (Fisher's exact test), Q value = 1

Table S505.  Gene #64: 'CIR1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
CIR1 MUTATED 1 2 0
CIR1 WILD-TYPE 24 9 14
'CIR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.755 (Fisher's exact test), Q value = 1

Table S506.  Gene #64: 'CIR1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
CIR1 MUTATED 0 2 1
CIR1 WILD-TYPE 8 17 22
'CIR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.582 (Fisher's exact test), Q value = 1

Table S507.  Gene #64: 'CIR1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
CIR1 MUTATED 1 1 1
CIR1 WILD-TYPE 20 8 19
'CIR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.776 (Fisher's exact test), Q value = 1

Table S508.  Gene #64: 'CIR1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
CIR1 MUTATED 0 1 2
CIR1 WILD-TYPE 9 21 17
'KIAA0020 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.799 (Fisher's exact test), Q value = 1

Table S509.  Gene #65: 'KIAA0020 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
KIAA0020 MUTATED 0 3 1
KIAA0020 WILD-TYPE 13 26 13
'KIAA0020 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.272 (Fisher's exact test), Q value = 1

Table S510.  Gene #65: 'KIAA0020 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
KIAA0020 MUTATED 0 2 2
KIAA0020 WILD-TYPE 18 22 12
'KIAA0020 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 1

Table S511.  Gene #65: 'KIAA0020 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
KIAA0020 MUTATED 0 1 2 0
KIAA0020 WILD-TYPE 18 11 7 8
'KIAA0020 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.431 (Fisher's exact test), Q value = 1

Table S512.  Gene #65: 'KIAA0020 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
KIAA0020 MUTATED 0 0 3
KIAA0020 WILD-TYPE 4 18 22
'KIAA0020 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.431 (Fisher's exact test), Q value = 1

Table S513.  Gene #65: 'KIAA0020 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
KIAA0020 MUTATED 1 1 2
KIAA0020 WILD-TYPE 24 10 12
'KIAA0020 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S514.  Gene #65: 'KIAA0020 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
KIAA0020 MUTATED 0 2 2
KIAA0020 WILD-TYPE 8 17 21
'KIAA0020 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.391 (Fisher's exact test), Q value = 1

Table S515.  Gene #65: 'KIAA0020 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
KIAA0020 MUTATED 1 0 3
KIAA0020 WILD-TYPE 20 9 17
'KIAA0020 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.657 (Fisher's exact test), Q value = 1

Table S516.  Gene #65: 'KIAA0020 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
KIAA0020 MUTATED 1 1 2
KIAA0020 WILD-TYPE 8 21 17
'ZNF608 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0687 (Fisher's exact test), Q value = 1

Table S517.  Gene #66: 'ZNF608 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
ZNF608 MUTATED 0 6 0
ZNF608 WILD-TYPE 13 23 14
'ZNF608 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 1

Table S518.  Gene #66: 'ZNF608 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
ZNF608 MUTATED 0 3 3
ZNF608 WILD-TYPE 18 21 11
'ZNF608 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.622 (Fisher's exact test), Q value = 1

Table S519.  Gene #66: 'ZNF608 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
ZNF608 MUTATED 1 2 2 1
ZNF608 WILD-TYPE 17 10 7 7
'ZNF608 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.423 (Fisher's exact test), Q value = 1

Table S520.  Gene #66: 'ZNF608 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
ZNF608 MUTATED 0 1 5
ZNF608 WILD-TYPE 4 17 20
'ZNF608 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.155 (Fisher's exact test), Q value = 1

Table S521.  Gene #66: 'ZNF608 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
ZNF608 MUTATED 1 2 3
ZNF608 WILD-TYPE 24 9 11
'ZNF608 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.154 (Fisher's exact test), Q value = 1

Table S522.  Gene #66: 'ZNF608 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
ZNF608 MUTATED 2 3 1
ZNF608 WILD-TYPE 6 16 22
'ZNF608 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0455 (Fisher's exact test), Q value = 1

Table S523.  Gene #66: 'ZNF608 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
ZNF608 MUTATED 0 2 4
ZNF608 WILD-TYPE 21 7 16

Figure S26.  Get High-res Image Gene #66: 'ZNF608 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'ZNF608 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0184 (Fisher's exact test), Q value = 1

Table S524.  Gene #66: 'ZNF608 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
ZNF608 MUTATED 3 0 3
ZNF608 WILD-TYPE 6 22 16

Figure S27.  Get High-res Image Gene #66: 'ZNF608 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'NEDD4L MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S525.  Gene #67: 'NEDD4L MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
NEDD4L MUTATED 1 4 1
NEDD4L WILD-TYPE 12 25 13
'NEDD4L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.466 (Fisher's exact test), Q value = 1

Table S526.  Gene #67: 'NEDD4L MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
NEDD4L MUTATED 1 2 3
NEDD4L WILD-TYPE 17 22 11
'NEDD4L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.817 (Fisher's exact test), Q value = 1

Table S527.  Gene #67: 'NEDD4L MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
NEDD4L MUTATED 3 2 1 0
NEDD4L WILD-TYPE 15 10 8 8
'NEDD4L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.82 (Fisher's exact test), Q value = 1

Table S528.  Gene #67: 'NEDD4L MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
NEDD4L MUTATED 0 3 3
NEDD4L WILD-TYPE 4 15 22
'NEDD4L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.733 (Fisher's exact test), Q value = 1

Table S529.  Gene #67: 'NEDD4L MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
NEDD4L MUTATED 3 2 1
NEDD4L WILD-TYPE 22 9 13
'NEDD4L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.36 (Fisher's exact test), Q value = 1

Table S530.  Gene #67: 'NEDD4L MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
NEDD4L MUTATED 0 4 2
NEDD4L WILD-TYPE 8 15 21
'NEDD4L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.857 (Fisher's exact test), Q value = 1

Table S531.  Gene #67: 'NEDD4L MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
NEDD4L MUTATED 2 1 3
NEDD4L WILD-TYPE 19 8 17
'NEDD4L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.317 (Fisher's exact test), Q value = 1

Table S532.  Gene #67: 'NEDD4L MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
NEDD4L MUTATED 0 2 4
NEDD4L WILD-TYPE 9 20 15
'THBS4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.339 (Fisher's exact test), Q value = 1

Table S533.  Gene #68: 'THBS4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
THBS4 MUTATED 0 5 1
THBS4 WILD-TYPE 13 24 13
'THBS4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 1

Table S534.  Gene #68: 'THBS4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
THBS4 MUTATED 0 3 3
THBS4 WILD-TYPE 18 21 11
'THBS4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.138 (Fisher's exact test), Q value = 1

Table S535.  Gene #68: 'THBS4 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
THBS4 MUTATED 1 1 3 0
THBS4 WILD-TYPE 17 11 6 8
'THBS4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.611 (Fisher's exact test), Q value = 1

Table S536.  Gene #68: 'THBS4 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
THBS4 MUTATED 0 1 4
THBS4 WILD-TYPE 4 17 21
'THBS4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.527 (Fisher's exact test), Q value = 1

Table S537.  Gene #68: 'THBS4 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
THBS4 MUTATED 2 1 3
THBS4 WILD-TYPE 23 10 11
'THBS4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.848 (Fisher's exact test), Q value = 1

Table S538.  Gene #68: 'THBS4 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
THBS4 MUTATED 1 3 2
THBS4 WILD-TYPE 7 16 21
'THBS4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.214 (Fisher's exact test), Q value = 1

Table S539.  Gene #68: 'THBS4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
THBS4 MUTATED 1 2 3
THBS4 WILD-TYPE 20 7 17
'THBS4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.261 (Fisher's exact test), Q value = 1

Table S540.  Gene #68: 'THBS4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
THBS4 MUTATED 2 1 3
THBS4 WILD-TYPE 7 21 16
'MMRN1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S541.  Gene #69: 'MMRN1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
MMRN1 MUTATED 1 4 1
MMRN1 WILD-TYPE 12 25 13
'MMRN1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.748 (Fisher's exact test), Q value = 1

Table S542.  Gene #69: 'MMRN1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
MMRN1 MUTATED 1 3 2
MMRN1 WILD-TYPE 17 21 12
'MMRN1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.914 (Fisher's exact test), Q value = 1

Table S543.  Gene #69: 'MMRN1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
MMRN1 MUTATED 2 2 1 0
MMRN1 WILD-TYPE 16 10 8 8
'MMRN1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S544.  Gene #69: 'MMRN1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
MMRN1 MUTATED 0 2 3
MMRN1 WILD-TYPE 4 16 22
'MMRN1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.733 (Fisher's exact test), Q value = 1

Table S545.  Gene #69: 'MMRN1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
MMRN1 MUTATED 3 2 1
MMRN1 WILD-TYPE 22 9 13
'MMRN1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.848 (Fisher's exact test), Q value = 1

Table S546.  Gene #69: 'MMRN1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
MMRN1 MUTATED 1 3 2
MMRN1 WILD-TYPE 7 16 21
'MMRN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.626 (Fisher's exact test), Q value = 1

Table S547.  Gene #69: 'MMRN1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
MMRN1 MUTATED 2 2 2
MMRN1 WILD-TYPE 19 7 18
'MMRN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.851 (Fisher's exact test), Q value = 1

Table S548.  Gene #69: 'MMRN1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
MMRN1 MUTATED 1 2 3
MMRN1 WILD-TYPE 8 20 16
'GPR25 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.414 (Fisher's exact test), Q value = 1

Table S549.  Gene #70: 'GPR25 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
GPR25 MUTATED 0 3 0
GPR25 WILD-TYPE 13 26 14
'GPR25 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.603 (Fisher's exact test), Q value = 1

Table S550.  Gene #70: 'GPR25 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
GPR25 MUTATED 0 2 1
GPR25 WILD-TYPE 18 22 13
'GPR25 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S551.  Gene #70: 'GPR25 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
GPR25 MUTATED 1 1 1 0
GPR25 WILD-TYPE 17 11 8 8
'GPR25 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S552.  Gene #70: 'GPR25 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
GPR25 MUTATED 0 1 2
GPR25 WILD-TYPE 4 17 23
'GPR25 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.786 (Fisher's exact test), Q value = 1

Table S553.  Gene #70: 'GPR25 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
GPR25 MUTATED 1 1 1
GPR25 WILD-TYPE 24 10 13
'GPR25 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.112 (Fisher's exact test), Q value = 1

Table S554.  Gene #70: 'GPR25 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
GPR25 MUTATED 0 3 0
GPR25 WILD-TYPE 8 16 23
'GPR25 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.293 (Fisher's exact test), Q value = 1

Table S555.  Gene #70: 'GPR25 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
GPR25 MUTATED 0 1 2
GPR25 WILD-TYPE 21 8 18
'GPR25 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.129 (Fisher's exact test), Q value = 1

Table S556.  Gene #70: 'GPR25 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
GPR25 MUTATED 0 0 3
GPR25 WILD-TYPE 9 22 16
'SORBS2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.522 (Fisher's exact test), Q value = 1

Table S557.  Gene #71: 'SORBS2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
SORBS2 MUTATED 0 4 2
SORBS2 WILD-TYPE 13 25 12
'SORBS2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0307 (Fisher's exact test), Q value = 1

Table S558.  Gene #71: 'SORBS2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
SORBS2 MUTATED 0 2 4
SORBS2 WILD-TYPE 18 22 10

Figure S28.  Get High-res Image Gene #71: 'SORBS2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SORBS2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S559.  Gene #71: 'SORBS2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
SORBS2 MUTATED 2 1 1 0
SORBS2 WILD-TYPE 16 11 8 8
'SORBS2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S560.  Gene #71: 'SORBS2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
SORBS2 MUTATED 0 2 2
SORBS2 WILD-TYPE 4 16 23
'SORBS2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S561.  Gene #71: 'SORBS2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
SORBS2 MUTATED 3 1 1
SORBS2 WILD-TYPE 22 10 13
'SORBS2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S562.  Gene #71: 'SORBS2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
SORBS2 MUTATED 1 2 2
SORBS2 WILD-TYPE 7 17 21
'SORBS2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S563.  Gene #71: 'SORBS2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
SORBS2 MUTATED 2 1 2
SORBS2 WILD-TYPE 19 8 18
'SORBS2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S564.  Gene #71: 'SORBS2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
SORBS2 MUTATED 1 2 2
SORBS2 WILD-TYPE 8 20 17
'SULT1C3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.795 (Fisher's exact test), Q value = 1

Table S565.  Gene #72: 'SULT1C3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
SULT1C3 MUTATED 1 1 1
SULT1C3 WILD-TYPE 12 28 13
'SULT1C3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.102 (Fisher's exact test), Q value = 1

Table S566.  Gene #72: 'SULT1C3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
SULT1C3 MUTATED 1 0 2
SULT1C3 WILD-TYPE 17 24 12
'SULT1C3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.88 (Fisher's exact test), Q value = 1

Table S567.  Gene #72: 'SULT1C3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
SULT1C3 MUTATED 2 1 0 0
SULT1C3 WILD-TYPE 16 11 9 8
'SULT1C3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.667 (Fisher's exact test), Q value = 1

Table S568.  Gene #72: 'SULT1C3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
SULT1C3 MUTATED 0 2 1
SULT1C3 WILD-TYPE 4 16 24
'SULT1C3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.589 (Fisher's exact test), Q value = 1

Table S569.  Gene #72: 'SULT1C3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
SULT1C3 MUTATED 2 1 0
SULT1C3 WILD-TYPE 23 10 14
'SULT1C3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S570.  Gene #72: 'SULT1C3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
SULT1C3 MUTATED 0 1 2
SULT1C3 WILD-TYPE 8 18 21
'SULT1C3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S571.  Gene #72: 'SULT1C3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
SULT1C3 MUTATED 2 0 1
SULT1C3 WILD-TYPE 19 9 19
'SULT1C3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S572.  Gene #72: 'SULT1C3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
SULT1C3 MUTATED 0 2 1
SULT1C3 WILD-TYPE 9 20 18
'ECSIT MUTATION STATUS' versus 'CN_CNMF'

P value = 0.66 (Fisher's exact test), Q value = 1

Table S573.  Gene #73: 'ECSIT MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
ECSIT MUTATED 1 3 0
ECSIT WILD-TYPE 12 26 14
'ECSIT MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S574.  Gene #73: 'ECSIT MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
ECSIT MUTATED 1 2 1
ECSIT WILD-TYPE 17 22 13
'ECSIT MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0397 (Fisher's exact test), Q value = 1

Table S575.  Gene #73: 'ECSIT MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
ECSIT MUTATED 1 0 3 0
ECSIT WILD-TYPE 17 12 6 8

Figure S29.  Get High-res Image Gene #73: 'ECSIT MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

'ECSIT MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.743 (Fisher's exact test), Q value = 1

Table S576.  Gene #73: 'ECSIT MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
ECSIT MUTATED 0 1 3
ECSIT WILD-TYPE 4 17 22
'ECSIT MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 1

Table S577.  Gene #73: 'ECSIT MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
ECSIT MUTATED 1 0 3
ECSIT WILD-TYPE 24 11 11
'ECSIT MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.812 (Fisher's exact test), Q value = 1

Table S578.  Gene #73: 'ECSIT MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
ECSIT MUTATED 1 1 2
ECSIT WILD-TYPE 7 18 21
'ECSIT MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.391 (Fisher's exact test), Q value = 1

Table S579.  Gene #73: 'ECSIT MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
ECSIT MUTATED 1 0 3
ECSIT WILD-TYPE 20 9 17
'ECSIT MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.29 (Fisher's exact test), Q value = 1

Table S580.  Gene #73: 'ECSIT MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
ECSIT MUTATED 2 1 1
ECSIT WILD-TYPE 7 21 18
'ZNF326 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.799 (Fisher's exact test), Q value = 1

Table S581.  Gene #74: 'ZNF326 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
ZNF326 MUTATED 0 3 1
ZNF326 WILD-TYPE 13 26 13
'ZNF326 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.272 (Fisher's exact test), Q value = 1

Table S582.  Gene #74: 'ZNF326 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
ZNF326 MUTATED 0 2 2
ZNF326 WILD-TYPE 18 22 12
'ZNF326 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.243 (Fisher's exact test), Q value = 1

Table S583.  Gene #74: 'ZNF326 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
ZNF326 MUTATED 1 0 2 0
ZNF326 WILD-TYPE 17 12 7 8
'ZNF326 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S584.  Gene #74: 'ZNF326 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
ZNF326 MUTATED 0 1 2
ZNF326 WILD-TYPE 4 17 23
'ZNF326 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.66 (Fisher's exact test), Q value = 1

Table S585.  Gene #74: 'ZNF326 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
ZNF326 MUTATED 2 0 2
ZNF326 WILD-TYPE 23 11 12
'ZNF326 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.499 (Fisher's exact test), Q value = 1

Table S586.  Gene #74: 'ZNF326 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
ZNF326 MUTATED 1 2 1
ZNF326 WILD-TYPE 7 17 22
'ZNF326 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.663 (Fisher's exact test), Q value = 1

Table S587.  Gene #74: 'ZNF326 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
ZNF326 MUTATED 1 1 2
ZNF326 WILD-TYPE 20 8 18
'ZNF326 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.657 (Fisher's exact test), Q value = 1

Table S588.  Gene #74: 'ZNF326 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
ZNF326 MUTATED 1 1 2
ZNF326 WILD-TYPE 8 21 17
'C15ORF52 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S589.  Gene #75: 'C15ORF52 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
C15ORF52 MUTATED 0 2 1
C15ORF52 WILD-TYPE 13 27 13
'C15ORF52 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.603 (Fisher's exact test), Q value = 1

Table S590.  Gene #75: 'C15ORF52 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
C15ORF52 MUTATED 0 2 1
C15ORF52 WILD-TYPE 18 22 13
'C15ORF52 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.786 (Fisher's exact test), Q value = 1

Table S591.  Gene #75: 'C15ORF52 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
C15ORF52 MUTATED 1 1 1
C15ORF52 WILD-TYPE 24 10 13
'C15ORF52 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.554 (Fisher's exact test), Q value = 1

Table S592.  Gene #75: 'C15ORF52 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
C15ORF52 MUTATED 1 1 1
C15ORF52 WILD-TYPE 7 18 22
'C15ORF52 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.786 (Fisher's exact test), Q value = 1

Table S593.  Gene #75: 'C15ORF52 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
C15ORF52 MUTATED 1 0 2
C15ORF52 WILD-TYPE 20 9 18
'C15ORF52 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.776 (Fisher's exact test), Q value = 1

Table S594.  Gene #75: 'C15ORF52 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
C15ORF52 MUTATED 1 1 1
C15ORF52 WILD-TYPE 8 21 18
'SLC39A5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.795 (Fisher's exact test), Q value = 1

Table S595.  Gene #76: 'SLC39A5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
SLC39A5 MUTATED 1 2 0
SLC39A5 WILD-TYPE 12 27 14
'SLC39A5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.782 (Fisher's exact test), Q value = 1

Table S596.  Gene #76: 'SLC39A5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
SLC39A5 MUTATED 1 2 0
SLC39A5 WILD-TYPE 17 22 14
'SLC39A5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S597.  Gene #76: 'SLC39A5 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
SLC39A5 MUTATED 1 1 1 0
SLC39A5 WILD-TYPE 17 11 8 8
'SLC39A5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S598.  Gene #76: 'SLC39A5 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
SLC39A5 MUTATED 0 1 2
SLC39A5 WILD-TYPE 4 17 23
'SLC39A5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.786 (Fisher's exact test), Q value = 1

Table S599.  Gene #76: 'SLC39A5 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
SLC39A5 MUTATED 1 1 1
SLC39A5 WILD-TYPE 24 10 13
'SLC39A5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.755 (Fisher's exact test), Q value = 1

Table S600.  Gene #76: 'SLC39A5 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
SLC39A5 MUTATED 0 2 1
SLC39A5 WILD-TYPE 8 17 22
'SLC39A5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.582 (Fisher's exact test), Q value = 1

Table S601.  Gene #76: 'SLC39A5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
SLC39A5 MUTATED 1 1 1
SLC39A5 WILD-TYPE 20 8 19
'SLC39A5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.776 (Fisher's exact test), Q value = 1

Table S602.  Gene #76: 'SLC39A5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
SLC39A5 MUTATED 0 1 2
SLC39A5 WILD-TYPE 9 21 17
'SLC24A1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.164 (Fisher's exact test), Q value = 1

Table S603.  Gene #77: 'SLC24A1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
SLC24A1 MUTATED 0 4 0
SLC24A1 WILD-TYPE 13 25 14
'SLC24A1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.349 (Fisher's exact test), Q value = 1

Table S604.  Gene #77: 'SLC24A1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
SLC24A1 MUTATED 0 3 1
SLC24A1 WILD-TYPE 18 21 13
'SLC24A1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.451 (Fisher's exact test), Q value = 1

Table S605.  Gene #77: 'SLC24A1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
SLC24A1 MUTATED 1 1 2 0
SLC24A1 WILD-TYPE 17 11 7 8
'SLC24A1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.743 (Fisher's exact test), Q value = 1

Table S606.  Gene #77: 'SLC24A1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
SLC24A1 MUTATED 0 1 3
SLC24A1 WILD-TYPE 4 17 22
'SLC24A1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.431 (Fisher's exact test), Q value = 1

Table S607.  Gene #77: 'SLC24A1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
SLC24A1 MUTATED 1 1 2
SLC24A1 WILD-TYPE 24 10 12
'SLC24A1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.113 (Fisher's exact test), Q value = 1

Table S608.  Gene #77: 'SLC24A1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
SLC24A1 MUTATED 1 3 0
SLC24A1 WILD-TYPE 7 16 23
'SLC24A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.17 (Fisher's exact test), Q value = 1

Table S609.  Gene #77: 'SLC24A1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
SLC24A1 MUTATED 0 1 3
SLC24A1 WILD-TYPE 21 8 17
'SLC24A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.165 (Fisher's exact test), Q value = 1

Table S610.  Gene #77: 'SLC24A1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
SLC24A1 MUTATED 1 0 3
SLC24A1 WILD-TYPE 8 22 16
'PUM2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.41 (Fisher's exact test), Q value = 1

Table S611.  Gene #78: 'PUM2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
PUM2 MUTATED 1 4 0
PUM2 WILD-TYPE 12 25 14
'PUM2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.712 (Fisher's exact test), Q value = 1

Table S612.  Gene #78: 'PUM2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
PUM2 MUTATED 1 2 2
PUM2 WILD-TYPE 17 22 12
'PUM2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.638 (Fisher's exact test), Q value = 1

Table S613.  Gene #78: 'PUM2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
PUM2 MUTATED 2 1 2 0
PUM2 WILD-TYPE 16 11 7 8
'PUM2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S614.  Gene #78: 'PUM2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
PUM2 MUTATED 0 2 3
PUM2 WILD-TYPE 4 16 22
'PUM2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.833 (Fisher's exact test), Q value = 1

Table S615.  Gene #78: 'PUM2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
PUM2 MUTATED 2 1 2
PUM2 WILD-TYPE 23 10 12
'PUM2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S616.  Gene #78: 'PUM2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
PUM2 MUTATED 1 2 2
PUM2 WILD-TYPE 7 17 21
'PUM2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.312 (Fisher's exact test), Q value = 1

Table S617.  Gene #78: 'PUM2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
PUM2 MUTATED 1 2 2
PUM2 WILD-TYPE 20 7 18
'PUM2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.247 (Fisher's exact test), Q value = 1

Table S618.  Gene #78: 'PUM2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
PUM2 MUTATED 2 1 2
PUM2 WILD-TYPE 7 21 17
'SYT2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.126 (Fisher's exact test), Q value = 1

Table S619.  Gene #79: 'SYT2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
SYT2 MUTATED 0 5 0
SYT2 WILD-TYPE 13 24 14
'SYT2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0249 (Fisher's exact test), Q value = 1

Table S620.  Gene #79: 'SYT2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
SYT2 MUTATED 0 5 0
SYT2 WILD-TYPE 18 19 14

Figure S30.  Get High-res Image Gene #79: 'SYT2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SYT2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.15 (Fisher's exact test), Q value = 1

Table S621.  Gene #79: 'SYT2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
SYT2 MUTATED 0 2 2 1
SYT2 WILD-TYPE 18 10 7 7
'SYT2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.132 (Fisher's exact test), Q value = 1

Table S622.  Gene #79: 'SYT2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
SYT2 MUTATED 0 0 5
SYT2 WILD-TYPE 4 18 20
'SYT2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.029 (Fisher's exact test), Q value = 1

Table S623.  Gene #79: 'SYT2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
SYT2 MUTATED 0 2 3
SYT2 WILD-TYPE 25 9 11

Figure S31.  Get High-res Image Gene #79: 'SYT2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'SYT2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0425 (Fisher's exact test), Q value = 1

Table S624.  Gene #79: 'SYT2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
SYT2 MUTATED 2 3 0
SYT2 WILD-TYPE 6 16 23

Figure S32.  Get High-res Image Gene #79: 'SYT2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'SYT2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0919 (Fisher's exact test), Q value = 1

Table S625.  Gene #79: 'SYT2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
SYT2 MUTATED 0 1 4
SYT2 WILD-TYPE 21 8 16
'SYT2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0693 (Fisher's exact test), Q value = 1

Table S626.  Gene #79: 'SYT2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
SYT2 MUTATED 2 0 3
SYT2 WILD-TYPE 7 22 16
'SLITRK5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.238 (Fisher's exact test), Q value = 1

Table S627.  Gene #80: 'SLITRK5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
SLITRK5 MUTATED 1 5 0
SLITRK5 WILD-TYPE 12 24 14
'SLITRK5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.748 (Fisher's exact test), Q value = 1

Table S628.  Gene #80: 'SLITRK5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
SLITRK5 MUTATED 1 3 2
SLITRK5 WILD-TYPE 17 21 12
'SLITRK5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.255 (Fisher's exact test), Q value = 1

Table S629.  Gene #80: 'SLITRK5 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
SLITRK5 MUTATED 2 1 3 0
SLITRK5 WILD-TYPE 16 11 6 8
'SLITRK5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S630.  Gene #80: 'SLITRK5 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
SLITRK5 MUTATED 0 2 4
SLITRK5 WILD-TYPE 4 16 21
'SLITRK5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.527 (Fisher's exact test), Q value = 1

Table S631.  Gene #80: 'SLITRK5 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
SLITRK5 MUTATED 2 1 3
SLITRK5 WILD-TYPE 23 10 11
'SLITRK5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.848 (Fisher's exact test), Q value = 1

Table S632.  Gene #80: 'SLITRK5 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
SLITRK5 MUTATED 1 3 2
SLITRK5 WILD-TYPE 7 16 21
'SLITRK5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.214 (Fisher's exact test), Q value = 1

Table S633.  Gene #80: 'SLITRK5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
SLITRK5 MUTATED 1 2 3
SLITRK5 WILD-TYPE 20 7 17
'SLITRK5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.261 (Fisher's exact test), Q value = 1

Table S634.  Gene #80: 'SLITRK5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
SLITRK5 MUTATED 2 1 3
SLITRK5 WILD-TYPE 7 21 16
'NAP1L3 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S635.  Gene #81: 'NAP1L3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
NAP1L3 MUTATED 0 2 1
NAP1L3 WILD-TYPE 13 27 13
'NAP1L3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.782 (Fisher's exact test), Q value = 1

Table S636.  Gene #81: 'NAP1L3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
NAP1L3 MUTATED 1 2 0
NAP1L3 WILD-TYPE 17 22 14
'NAP1L3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.243 (Fisher's exact test), Q value = 1

Table S637.  Gene #81: 'NAP1L3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
NAP1L3 MUTATED 1 0 2 0
NAP1L3 WILD-TYPE 17 12 7 8
'NAP1L3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S638.  Gene #81: 'NAP1L3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
NAP1L3 MUTATED 0 1 2
NAP1L3 WILD-TYPE 4 17 23
'NAP1L3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.304 (Fisher's exact test), Q value = 1

Table S639.  Gene #81: 'NAP1L3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
NAP1L3 MUTATED 1 0 2
NAP1L3 WILD-TYPE 24 11 12
'NAP1L3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.554 (Fisher's exact test), Q value = 1

Table S640.  Gene #81: 'NAP1L3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
NAP1L3 MUTATED 1 1 1
NAP1L3 WILD-TYPE 7 18 22
'NAP1L3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.786 (Fisher's exact test), Q value = 1

Table S641.  Gene #81: 'NAP1L3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
NAP1L3 MUTATED 1 0 2
NAP1L3 WILD-TYPE 20 9 18
'NAP1L3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.776 (Fisher's exact test), Q value = 1

Table S642.  Gene #81: 'NAP1L3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
NAP1L3 MUTATED 1 1 1
NAP1L3 WILD-TYPE 8 21 18
'PHF14 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.795 (Fisher's exact test), Q value = 1

Table S643.  Gene #82: 'PHF14 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
PHF14 MUTATED 1 2 0
PHF14 WILD-TYPE 12 27 14
'PHF14 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.782 (Fisher's exact test), Q value = 1

Table S644.  Gene #82: 'PHF14 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
PHF14 MUTATED 1 2 0
PHF14 WILD-TYPE 17 22 14
'PHF14 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S645.  Gene #82: 'PHF14 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
PHF14 MUTATED 1 1 1 0
PHF14 WILD-TYPE 17 11 8 8
'PHF14 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S646.  Gene #82: 'PHF14 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
PHF14 MUTATED 0 1 2
PHF14 WILD-TYPE 4 17 23
'PHF14 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.786 (Fisher's exact test), Q value = 1

Table S647.  Gene #82: 'PHF14 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
PHF14 MUTATED 1 1 1
PHF14 WILD-TYPE 24 10 13
'PHF14 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.554 (Fisher's exact test), Q value = 1

Table S648.  Gene #82: 'PHF14 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
PHF14 MUTATED 1 1 1
PHF14 WILD-TYPE 7 18 22
'PHF14 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.786 (Fisher's exact test), Q value = 1

Table S649.  Gene #82: 'PHF14 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
PHF14 MUTATED 1 0 2
PHF14 WILD-TYPE 20 9 18
'PHF14 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.776 (Fisher's exact test), Q value = 1

Table S650.  Gene #82: 'PHF14 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
PHF14 MUTATED 1 1 1
PHF14 WILD-TYPE 8 21 18
'CCDC28B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.164 (Fisher's exact test), Q value = 1

Table S651.  Gene #83: 'CCDC28B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
CCDC28B MUTATED 0 4 0
CCDC28B WILD-TYPE 13 25 14
'CCDC28B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.349 (Fisher's exact test), Q value = 1

Table S652.  Gene #83: 'CCDC28B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
CCDC28B MUTATED 0 3 1
CCDC28B WILD-TYPE 18 21 13
'CCDC28B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0142 (Fisher's exact test), Q value = 1

Table S653.  Gene #83: 'CCDC28B MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
CCDC28B MUTATED 0 0 3 1
CCDC28B WILD-TYPE 18 12 6 7

Figure S33.  Get High-res Image Gene #83: 'CCDC28B MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

'CCDC28B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.118 (Fisher's exact test), Q value = 1

Table S654.  Gene #83: 'CCDC28B MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
CCDC28B MUTATED 1 0 3
CCDC28B WILD-TYPE 3 18 22
'CCDC28B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 1

Table S655.  Gene #83: 'CCDC28B MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
CCDC28B MUTATED 1 0 3
CCDC28B WILD-TYPE 24 11 11
'CCDC28B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.812 (Fisher's exact test), Q value = 1

Table S656.  Gene #83: 'CCDC28B MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
CCDC28B MUTATED 1 1 2
CCDC28B WILD-TYPE 7 18 21
'CCDC28B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.17 (Fisher's exact test), Q value = 1

Table S657.  Gene #83: 'CCDC28B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
CCDC28B MUTATED 0 1 3
CCDC28B WILD-TYPE 21 8 17
'CCDC28B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.29 (Fisher's exact test), Q value = 1

Table S658.  Gene #83: 'CCDC28B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
CCDC28B MUTATED 2 1 1
CCDC28B WILD-TYPE 7 21 18
'PDE12 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.603 (Fisher's exact test), Q value = 1

Table S659.  Gene #84: 'PDE12 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
PDE12 MUTATED 0 2 1
PDE12 WILD-TYPE 18 22 13
'PDE12 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.786 (Fisher's exact test), Q value = 1

Table S660.  Gene #84: 'PDE12 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
PDE12 MUTATED 1 1 1
PDE12 WILD-TYPE 24 10 13
'PDE12 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.755 (Fisher's exact test), Q value = 1

Table S661.  Gene #84: 'PDE12 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
PDE12 MUTATED 0 2 1
PDE12 WILD-TYPE 8 17 22
'PDE12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.786 (Fisher's exact test), Q value = 1

Table S662.  Gene #84: 'PDE12 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
PDE12 MUTATED 1 0 2
PDE12 WILD-TYPE 20 9 18
'PDE12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.776 (Fisher's exact test), Q value = 1

Table S663.  Gene #84: 'PDE12 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
PDE12 MUTATED 0 1 2
PDE12 WILD-TYPE 9 21 17
'FLAD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.414 (Fisher's exact test), Q value = 1

Table S664.  Gene #85: 'FLAD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
FLAD1 MUTATED 0 3 0
FLAD1 WILD-TYPE 13 26 14
'FLAD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.175 (Fisher's exact test), Q value = 1

Table S665.  Gene #85: 'FLAD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
FLAD1 MUTATED 0 3 0
FLAD1 WILD-TYPE 18 21 14
'FLAD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 1

Table S666.  Gene #85: 'FLAD1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
FLAD1 MUTATED 0 1 2 0
FLAD1 WILD-TYPE 18 11 7 8
'FLAD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.431 (Fisher's exact test), Q value = 1

Table S667.  Gene #85: 'FLAD1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
FLAD1 MUTATED 0 0 3
FLAD1 WILD-TYPE 4 18 22
'FLAD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.117 (Fisher's exact test), Q value = 1

Table S668.  Gene #85: 'FLAD1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
FLAD1 MUTATED 0 1 2
FLAD1 WILD-TYPE 25 10 12
'FLAD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.182 (Fisher's exact test), Q value = 1

Table S669.  Gene #85: 'FLAD1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
FLAD1 MUTATED 1 2 0
FLAD1 WILD-TYPE 7 17 23
'FLAD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.138 (Fisher's exact test), Q value = 1

Table S670.  Gene #85: 'FLAD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
FLAD1 MUTATED 0 0 3
FLAD1 WILD-TYPE 21 9 17
'FLAD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.208 (Fisher's exact test), Q value = 1

Table S671.  Gene #85: 'FLAD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
FLAD1 MUTATED 1 0 2
FLAD1 WILD-TYPE 8 22 17
'ENG MUTATION STATUS' versus 'CN_CNMF'

P value = 0.414 (Fisher's exact test), Q value = 1

Table S672.  Gene #86: 'ENG MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
ENG MUTATED 0 3 0
ENG WILD-TYPE 13 26 14
'ENG MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.175 (Fisher's exact test), Q value = 1

Table S673.  Gene #86: 'ENG MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
ENG MUTATED 0 3 0
ENG WILD-TYPE 18 21 14
'ENG MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 1

Table S674.  Gene #86: 'ENG MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
ENG MUTATED 0 1 2 0
ENG WILD-TYPE 18 11 7 8
'ENG MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.431 (Fisher's exact test), Q value = 1

Table S675.  Gene #86: 'ENG MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
ENG MUTATED 0 0 3
ENG WILD-TYPE 4 18 22
'ENG MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.117 (Fisher's exact test), Q value = 1

Table S676.  Gene #86: 'ENG MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
ENG MUTATED 0 1 2
ENG WILD-TYPE 25 10 12
'ENG MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.03 (Fisher's exact test), Q value = 1

Table S677.  Gene #86: 'ENG MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
ENG MUTATED 2 1 0
ENG WILD-TYPE 6 18 23

Figure S34.  Get High-res Image Gene #86: 'ENG MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'ENG MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.293 (Fisher's exact test), Q value = 1

Table S678.  Gene #86: 'ENG MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
ENG MUTATED 0 1 2
ENG WILD-TYPE 21 8 18
'ENG MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0392 (Fisher's exact test), Q value = 1

Table S679.  Gene #86: 'ENG MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
ENG MUTATED 2 0 1
ENG WILD-TYPE 7 22 18

Figure S35.  Get High-res Image Gene #86: 'ENG MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'PABPC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.53 (Fisher's exact test), Q value = 1

Table S680.  Gene #87: 'PABPC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
PABPC1 MUTATED 0 2 2
PABPC1 WILD-TYPE 13 27 12
'PABPC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.556 (Fisher's exact test), Q value = 1

Table S681.  Gene #87: 'PABPC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
PABPC1 MUTATED 1 1 2
PABPC1 WILD-TYPE 17 23 12
'PABPC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.767 (Fisher's exact test), Q value = 1

Table S682.  Gene #87: 'PABPC1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
PABPC1 MUTATED 1 1 0 1
PABPC1 WILD-TYPE 17 11 9 7
'PABPC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S683.  Gene #87: 'PABPC1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
PABPC1 MUTATED 0 1 2
PABPC1 WILD-TYPE 4 17 23
'PABPC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S684.  Gene #87: 'PABPC1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
PABPC1 MUTATED 2 1 1
PABPC1 WILD-TYPE 23 10 13
'PABPC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S685.  Gene #87: 'PABPC1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
PABPC1 MUTATED 0 2 2
PABPC1 WILD-TYPE 8 17 21
'PABPC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S686.  Gene #87: 'PABPC1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
PABPC1 MUTATED 2 0 2
PABPC1 WILD-TYPE 19 9 18
'PABPC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S687.  Gene #87: 'PABPC1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
PABPC1 MUTATED 0 2 2
PABPC1 WILD-TYPE 9 20 17
'ATG16L2 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S688.  Gene #88: 'ATG16L2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
ATG16L2 MUTATED 0 2 1
ATG16L2 WILD-TYPE 13 27 13
'ATG16L2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.331 (Fisher's exact test), Q value = 1

Table S689.  Gene #88: 'ATG16L2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
ATG16L2 MUTATED 0 1 2
ATG16L2 WILD-TYPE 18 23 12
'ATG16L2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.243 (Fisher's exact test), Q value = 1

Table S690.  Gene #88: 'ATG16L2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
ATG16L2 MUTATED 1 0 2 0
ATG16L2 WILD-TYPE 17 12 7 8
'ATG16L2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S691.  Gene #88: 'ATG16L2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
ATG16L2 MUTATED 0 1 2
ATG16L2 WILD-TYPE 4 17 23
'ATG16L2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.304 (Fisher's exact test), Q value = 1

Table S692.  Gene #88: 'ATG16L2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
ATG16L2 MUTATED 1 0 2
ATG16L2 WILD-TYPE 24 11 12
'ATG16L2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.376 (Fisher's exact test), Q value = 1

Table S693.  Gene #88: 'ATG16L2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
ATG16L2 MUTATED 1 0 2
ATG16L2 WILD-TYPE 7 19 21
'ATG16L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.786 (Fisher's exact test), Q value = 1

Table S694.  Gene #88: 'ATG16L2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
ATG16L2 MUTATED 1 0 2
ATG16L2 WILD-TYPE 20 9 18
'ATG16L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0796 (Fisher's exact test), Q value = 1

Table S695.  Gene #88: 'ATG16L2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
ATG16L2 MUTATED 2 1 0
ATG16L2 WILD-TYPE 7 21 19
'LRCH1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.655 (Fisher's exact test), Q value = 1

Table S696.  Gene #89: 'LRCH1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
LRCH1 MUTATED 1 5 1
LRCH1 WILD-TYPE 12 24 13
'LRCH1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.451 (Fisher's exact test), Q value = 1

Table S697.  Gene #89: 'LRCH1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
LRCH1 MUTATED 1 3 3
LRCH1 WILD-TYPE 17 21 11
'LRCH1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.298 (Fisher's exact test), Q value = 1

Table S698.  Gene #89: 'LRCH1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
LRCH1 MUTATED 3 1 3 0
LRCH1 WILD-TYPE 15 11 6 8
'LRCH1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S699.  Gene #89: 'LRCH1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
LRCH1 MUTATED 0 3 4
LRCH1 WILD-TYPE 4 15 21
'LRCH1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.66 (Fisher's exact test), Q value = 1

Table S700.  Gene #89: 'LRCH1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
LRCH1 MUTATED 3 1 3
LRCH1 WILD-TYPE 22 10 11
'LRCH1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.655 (Fisher's exact test), Q value = 1

Table S701.  Gene #89: 'LRCH1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
LRCH1 MUTATED 2 2 3
LRCH1 WILD-TYPE 6 17 20
'LRCH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.761 (Fisher's exact test), Q value = 1

Table S702.  Gene #89: 'LRCH1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
LRCH1 MUTATED 2 1 4
LRCH1 WILD-TYPE 19 8 16
'LRCH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.226 (Fisher's exact test), Q value = 1

Table S703.  Gene #89: 'LRCH1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
LRCH1 MUTATED 3 2 2
LRCH1 WILD-TYPE 6 20 17
'PLCZ1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S704.  Gene #90: 'PLCZ1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
PLCZ1 MUTATED 0 2 1
PLCZ1 WILD-TYPE 13 27 13
'PLCZ1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.331 (Fisher's exact test), Q value = 1

Table S705.  Gene #90: 'PLCZ1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
PLCZ1 MUTATED 0 1 2
PLCZ1 WILD-TYPE 18 23 12
'PLCZ1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.243 (Fisher's exact test), Q value = 1

Table S706.  Gene #90: 'PLCZ1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
PLCZ1 MUTATED 1 0 2 0
PLCZ1 WILD-TYPE 17 12 7 8
'PLCZ1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S707.  Gene #90: 'PLCZ1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
PLCZ1 MUTATED 0 1 2
PLCZ1 WILD-TYPE 4 17 23
'PLCZ1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.304 (Fisher's exact test), Q value = 1

Table S708.  Gene #90: 'PLCZ1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
PLCZ1 MUTATED 1 0 2
PLCZ1 WILD-TYPE 24 11 12
'PLCZ1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S709.  Gene #90: 'PLCZ1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
PLCZ1 MUTATED 0 1 2
PLCZ1 WILD-TYPE 8 18 21
'PLCZ1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.786 (Fisher's exact test), Q value = 1

Table S710.  Gene #90: 'PLCZ1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
PLCZ1 MUTATED 1 0 2
PLCZ1 WILD-TYPE 20 9 18
'PLCZ1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.776 (Fisher's exact test), Q value = 1

Table S711.  Gene #90: 'PLCZ1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
PLCZ1 MUTATED 1 1 1
PLCZ1 WILD-TYPE 8 21 18
'TAOK2 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S712.  Gene #91: 'TAOK2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
TAOK2 MUTATED 1 4 1
TAOK2 WILD-TYPE 12 25 13
'TAOK2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S713.  Gene #91: 'TAOK2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
TAOK2 MUTATED 2 3 1
TAOK2 WILD-TYPE 16 21 13
'TAOK2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S714.  Gene #91: 'TAOK2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
TAOK2 MUTATED 2 2 1 1
TAOK2 WILD-TYPE 16 10 8 7
'TAOK2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.645 (Fisher's exact test), Q value = 1

Table S715.  Gene #91: 'TAOK2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
TAOK2 MUTATED 1 2 3
TAOK2 WILD-TYPE 3 16 22
'TAOK2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S716.  Gene #91: 'TAOK2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
TAOK2 MUTATED 3 1 2
TAOK2 WILD-TYPE 22 10 12
'TAOK2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.848 (Fisher's exact test), Q value = 1

Table S717.  Gene #91: 'TAOK2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
TAOK2 MUTATED 1 3 2
TAOK2 WILD-TYPE 7 16 21
'TAOK2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 1

Table S718.  Gene #91: 'TAOK2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
TAOK2 MUTATED 1 3 2
TAOK2 WILD-TYPE 20 6 18
'TAOK2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.851 (Fisher's exact test), Q value = 1

Table S719.  Gene #91: 'TAOK2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
TAOK2 MUTATED 1 2 3
TAOK2 WILD-TYPE 8 20 16
'ZMIZ1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.149 (Fisher's exact test), Q value = 1

Table S720.  Gene #92: 'ZMIZ1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
ZMIZ1 MUTATED 3 3 0
ZMIZ1 WILD-TYPE 10 26 14
'ZMIZ1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.866 (Fisher's exact test), Q value = 1

Table S721.  Gene #92: 'ZMIZ1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
ZMIZ1 MUTATED 2 2 2
ZMIZ1 WILD-TYPE 16 22 12
'ZMIZ1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.554 (Fisher's exact test), Q value = 1

Table S722.  Gene #92: 'ZMIZ1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
ZMIZ1 MUTATED 3 0 1 1
ZMIZ1 WILD-TYPE 15 12 8 7
'ZMIZ1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.463 (Fisher's exact test), Q value = 1

Table S723.  Gene #92: 'ZMIZ1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
ZMIZ1 MUTATED 1 2 2
ZMIZ1 WILD-TYPE 3 16 23
'ZMIZ1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.855 (Fisher's exact test), Q value = 1

Table S724.  Gene #92: 'ZMIZ1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
ZMIZ1 MUTATED 4 1 1
ZMIZ1 WILD-TYPE 21 10 13
'ZMIZ1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S725.  Gene #92: 'ZMIZ1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
ZMIZ1 MUTATED 1 2 3
ZMIZ1 WILD-TYPE 7 17 20
'ZMIZ1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.332 (Fisher's exact test), Q value = 1

Table S726.  Gene #92: 'ZMIZ1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
ZMIZ1 MUTATED 3 2 1
ZMIZ1 WILD-TYPE 18 7 19
'ZMIZ1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S727.  Gene #92: 'ZMIZ1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
ZMIZ1 MUTATED 1 3 2
ZMIZ1 WILD-TYPE 8 19 17
'SYT15 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S728.  Gene #93: 'SYT15 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
SYT15 MUTATED 1 4 1
SYT15 WILD-TYPE 12 25 13
'SYT15 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0617 (Fisher's exact test), Q value = 1

Table S729.  Gene #93: 'SYT15 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
SYT15 MUTATED 1 1 4
SYT15 WILD-TYPE 17 23 10
'SYT15 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.817 (Fisher's exact test), Q value = 1

Table S730.  Gene #93: 'SYT15 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
SYT15 MUTATED 3 2 1 0
SYT15 WILD-TYPE 15 10 8 8
'SYT15 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.82 (Fisher's exact test), Q value = 1

Table S731.  Gene #93: 'SYT15 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
SYT15 MUTATED 0 3 3
SYT15 WILD-TYPE 4 15 22
'SYT15 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S732.  Gene #93: 'SYT15 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
SYT15 MUTATED 3 1 2
SYT15 WILD-TYPE 22 10 12
'SYT15 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.724 (Fisher's exact test), Q value = 1

Table S733.  Gene #93: 'SYT15 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
SYT15 MUTATED 0 3 3
SYT15 WILD-TYPE 8 16 20
'SYT15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.857 (Fisher's exact test), Q value = 1

Table S734.  Gene #93: 'SYT15 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
SYT15 MUTATED 2 1 3
SYT15 WILD-TYPE 19 8 17
'SYT15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.851 (Fisher's exact test), Q value = 1

Table S735.  Gene #93: 'SYT15 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
SYT15 MUTATED 1 2 3
SYT15 WILD-TYPE 8 20 16
'LRTM1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.414 (Fisher's exact test), Q value = 1

Table S736.  Gene #94: 'LRTM1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
LRTM1 MUTATED 0 3 0
LRTM1 WILD-TYPE 13 26 14
'LRTM1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.175 (Fisher's exact test), Q value = 1

Table S737.  Gene #94: 'LRTM1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
LRTM1 MUTATED 0 3 0
LRTM1 WILD-TYPE 18 21 14
'LRTM1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00345 (Fisher's exact test), Q value = 1

Table S738.  Gene #94: 'LRTM1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
LRTM1 MUTATED 0 0 0 3
LRTM1 WILD-TYPE 18 12 9 5

Figure S36.  Get High-res Image Gene #94: 'LRTM1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

'LRTM1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.289 (Fisher's exact test), Q value = 1

Table S739.  Gene #94: 'LRTM1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
LRTM1 MUTATED 1 1 1
LRTM1 WILD-TYPE 3 17 24
'LRTM1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S740.  Gene #94: 'LRTM1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
LRTM1 MUTATED 2 0 1
LRTM1 WILD-TYPE 23 11 13
'LRTM1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.376 (Fisher's exact test), Q value = 1

Table S741.  Gene #94: 'LRTM1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
LRTM1 MUTATED 1 0 2
LRTM1 WILD-TYPE 7 19 21
'LRTM1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.582 (Fisher's exact test), Q value = 1

Table S742.  Gene #94: 'LRTM1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
LRTM1 MUTATED 1 1 1
LRTM1 WILD-TYPE 20 8 19
'LRTM1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.392 (Fisher's exact test), Q value = 1

Table S743.  Gene #94: 'LRTM1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
LRTM1 MUTATED 1 2 0
LRTM1 WILD-TYPE 8 20 19
'TIMM50 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.336 (Fisher's exact test), Q value = 1

Table S744.  Gene #95: 'TIMM50 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
TIMM50 MUTATED 2 2 0
TIMM50 WILD-TYPE 11 27 14
'TIMM50 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.556 (Fisher's exact test), Q value = 1

Table S745.  Gene #95: 'TIMM50 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
TIMM50 MUTATED 1 1 2
TIMM50 WILD-TYPE 17 23 12
'TIMM50 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.408 (Fisher's exact test), Q value = 1

Table S746.  Gene #95: 'TIMM50 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
TIMM50 MUTATED 3 0 1 0
TIMM50 WILD-TYPE 15 12 8 8
'TIMM50 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S747.  Gene #95: 'TIMM50 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
TIMM50 MUTATED 0 2 2
TIMM50 WILD-TYPE 4 16 23
'TIMM50 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.799 (Fisher's exact test), Q value = 1

Table S748.  Gene #95: 'TIMM50 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
TIMM50 MUTATED 3 0 1
TIMM50 WILD-TYPE 22 11 13
'TIMM50 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.812 (Fisher's exact test), Q value = 1

Table S749.  Gene #95: 'TIMM50 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
TIMM50 MUTATED 1 1 2
TIMM50 WILD-TYPE 7 18 21
'TIMM50 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.827 (Fisher's exact test), Q value = 1

Table S750.  Gene #95: 'TIMM50 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
TIMM50 MUTATED 2 1 1
TIMM50 WILD-TYPE 19 8 19
'TIMM50 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S751.  Gene #95: 'TIMM50 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
TIMM50 MUTATED 1 2 1
TIMM50 WILD-TYPE 8 20 18
'CCNK MUTATION STATUS' versus 'CN_CNMF'

P value = 0.66 (Fisher's exact test), Q value = 1

Table S752.  Gene #96: 'CCNK MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
CCNK MUTATED 1 3 0
CCNK WILD-TYPE 12 26 14
'CCNK MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S753.  Gene #96: 'CCNK MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
CCNK MUTATED 1 2 1
CCNK WILD-TYPE 17 22 13
'CCNK MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.296 (Fisher's exact test), Q value = 1

Table S754.  Gene #96: 'CCNK MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
CCNK MUTATED 2 0 2 0
CCNK WILD-TYPE 16 12 7 8
'CCNK MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S755.  Gene #96: 'CCNK MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
CCNK MUTATED 0 2 2
CCNK WILD-TYPE 4 16 23
'CCNK MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.66 (Fisher's exact test), Q value = 1

Table S756.  Gene #96: 'CCNK MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
CCNK MUTATED 2 0 2
CCNK WILD-TYPE 23 11 12
'CCNK MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.499 (Fisher's exact test), Q value = 1

Table S757.  Gene #96: 'CCNK MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
CCNK MUTATED 1 2 1
CCNK WILD-TYPE 7 17 22
'CCNK MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.663 (Fisher's exact test), Q value = 1

Table S758.  Gene #96: 'CCNK MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
CCNK MUTATED 1 1 2
CCNK WILD-TYPE 20 8 18
'CCNK MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.657 (Fisher's exact test), Q value = 1

Table S759.  Gene #96: 'CCNK MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
CCNK MUTATED 1 1 2
CCNK WILD-TYPE 8 21 17
'TTK MUTATION STATUS' versus 'CN_CNMF'

P value = 0.126 (Fisher's exact test), Q value = 1

Table S760.  Gene #97: 'TTK MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
TTK MUTATED 0 5 0
TTK WILD-TYPE 13 24 14
'TTK MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.244 (Fisher's exact test), Q value = 1

Table S761.  Gene #97: 'TTK MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
TTK MUTATED 0 3 2
TTK WILD-TYPE 18 21 12
'TTK MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.595 (Fisher's exact test), Q value = 1

Table S762.  Gene #97: 'TTK MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
TTK MUTATED 1 1 2 1
TTK WILD-TYPE 17 11 7 7
'TTK MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.343 (Fisher's exact test), Q value = 1

Table S763.  Gene #97: 'TTK MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
TTK MUTATED 1 1 3
TTK WILD-TYPE 3 17 22
'TTK MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.833 (Fisher's exact test), Q value = 1

Table S764.  Gene #97: 'TTK MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
TTK MUTATED 2 1 2
TTK WILD-TYPE 23 10 12
'TTK MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.224 (Fisher's exact test), Q value = 1

Table S765.  Gene #97: 'TTK MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
TTK MUTATED 2 2 1
TTK WILD-TYPE 6 17 22
'TTK MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0713 (Fisher's exact test), Q value = 1

Table S766.  Gene #97: 'TTK MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
TTK MUTATED 0 2 3
TTK WILD-TYPE 21 7 17
'TTK MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.247 (Fisher's exact test), Q value = 1

Table S767.  Gene #97: 'TTK MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
TTK MUTATED 2 1 2
TTK WILD-TYPE 7 21 17
'TMEM175 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.66 (Fisher's exact test), Q value = 1

Table S768.  Gene #98: 'TMEM175 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
TMEM175 MUTATED 1 3 0
TMEM175 WILD-TYPE 12 26 14
'TMEM175 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.349 (Fisher's exact test), Q value = 1

Table S769.  Gene #98: 'TMEM175 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
TMEM175 MUTATED 0 3 1
TMEM175 WILD-TYPE 18 21 13
'TMEM175 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.676 (Fisher's exact test), Q value = 1

Table S770.  Gene #98: 'TMEM175 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
TMEM175 MUTATED 1 2 1 0
TMEM175 WILD-TYPE 17 10 8 8
'TMEM175 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.743 (Fisher's exact test), Q value = 1

Table S771.  Gene #98: 'TMEM175 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
TMEM175 MUTATED 0 1 3
TMEM175 WILD-TYPE 4 17 22
'TMEM175 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.323 (Fisher's exact test), Q value = 1

Table S772.  Gene #98: 'TMEM175 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
TMEM175 MUTATED 1 2 1
TMEM175 WILD-TYPE 24 9 13
'TMEM175 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0273 (Fisher's exact test), Q value = 1

Table S773.  Gene #98: 'TMEM175 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
TMEM175 MUTATED 0 4 0
TMEM175 WILD-TYPE 8 15 23

Figure S37.  Get High-res Image Gene #98: 'TMEM175 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'TMEM175 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.17 (Fisher's exact test), Q value = 1

Table S774.  Gene #98: 'TMEM175 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
TMEM175 MUTATED 0 1 3
TMEM175 WILD-TYPE 21 8 17
'TMEM175 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0323 (Fisher's exact test), Q value = 1

Table S775.  Gene #98: 'TMEM175 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
TMEM175 MUTATED 0 0 4
TMEM175 WILD-TYPE 9 22 15

Figure S38.  Get High-res Image Gene #98: 'TMEM175 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'CD93 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S776.  Gene #99: 'CD93 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
CD93 MUTATED 1 3 1
CD93 WILD-TYPE 12 26 13
'CD93 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00748 (Fisher's exact test), Q value = 1

Table S777.  Gene #99: 'CD93 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
CD93 MUTATED 1 0 4
CD93 WILD-TYPE 17 24 10

Figure S39.  Get High-res Image Gene #99: 'CD93 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CD93 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.554 (Fisher's exact test), Q value = 1

Table S778.  Gene #99: 'CD93 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
CD93 MUTATED 3 0 1 1
CD93 WILD-TYPE 15 12 8 7
'CD93 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.235 (Fisher's exact test), Q value = 1

Table S779.  Gene #99: 'CD93 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
CD93 MUTATED 1 3 1
CD93 WILD-TYPE 3 15 24
'CD93 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.483 (Fisher's exact test), Q value = 1

Table S780.  Gene #99: 'CD93 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
CD93 MUTATED 4 0 1
CD93 WILD-TYPE 21 11 13
'CD93 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.837 (Fisher's exact test), Q value = 1

Table S781.  Gene #99: 'CD93 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
CD93 MUTATED 0 2 3
CD93 WILD-TYPE 8 17 20
'CD93 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.384 (Fisher's exact test), Q value = 1

Table S782.  Gene #99: 'CD93 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
CD93 MUTATED 2 2 1
CD93 WILD-TYPE 19 7 19
'CD93 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S783.  Gene #99: 'CD93 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
CD93 MUTATED 1 2 2
CD93 WILD-TYPE 8 20 17
'C19ORF55 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.53 (Fisher's exact test), Q value = 1

Table S784.  Gene #100: 'C19ORF55 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
C19ORF55 MUTATED 0 2 2
C19ORF55 WILD-TYPE 13 27 12
'C19ORF55 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0289 (Fisher's exact test), Q value = 1

Table S785.  Gene #100: 'C19ORF55 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
C19ORF55 MUTATED 1 0 3
C19ORF55 WILD-TYPE 17 24 11

Figure S40.  Get High-res Image Gene #100: 'C19ORF55 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'C19ORF55 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.88 (Fisher's exact test), Q value = 1

Table S786.  Gene #100: 'C19ORF55 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
C19ORF55 MUTATED 2 1 0 0
C19ORF55 WILD-TYPE 16 11 9 8
'C19ORF55 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.667 (Fisher's exact test), Q value = 1

Table S787.  Gene #100: 'C19ORF55 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
C19ORF55 MUTATED 0 2 1
C19ORF55 WILD-TYPE 4 16 24
'C19ORF55 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.541 (Fisher's exact test), Q value = 1

Table S788.  Gene #100: 'C19ORF55 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
C19ORF55 MUTATED 3 1 0
C19ORF55 WILD-TYPE 22 10 14
'C19ORF55 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S789.  Gene #100: 'C19ORF55 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
C19ORF55 MUTATED 0 2 2
C19ORF55 WILD-TYPE 8 17 21
'C19ORF55 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.827 (Fisher's exact test), Q value = 1

Table S790.  Gene #100: 'C19ORF55 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
C19ORF55 MUTATED 2 1 1
C19ORF55 WILD-TYPE 19 8 19
'C19ORF55 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S791.  Gene #100: 'C19ORF55 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
C19ORF55 MUTATED 0 2 2
C19ORF55 WILD-TYPE 9 20 17
'MRPL48 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S792.  Gene #101: 'MRPL48 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
MRPL48 MUTATED 0 2 1
MRPL48 WILD-TYPE 13 27 13
'MRPL48 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.603 (Fisher's exact test), Q value = 1

Table S793.  Gene #101: 'MRPL48 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
MRPL48 MUTATED 0 2 1
MRPL48 WILD-TYPE 18 22 13
'MRPL48 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S794.  Gene #101: 'MRPL48 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
MRPL48 MUTATED 1 1 1 0
MRPL48 WILD-TYPE 17 11 8 8
'MRPL48 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S795.  Gene #101: 'MRPL48 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
MRPL48 MUTATED 0 1 2
MRPL48 WILD-TYPE 4 17 23
'MRPL48 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.786 (Fisher's exact test), Q value = 1

Table S796.  Gene #101: 'MRPL48 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
MRPL48 MUTATED 1 1 1
MRPL48 WILD-TYPE 24 10 13
'MRPL48 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.112 (Fisher's exact test), Q value = 1

Table S797.  Gene #101: 'MRPL48 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
MRPL48 MUTATED 0 3 0
MRPL48 WILD-TYPE 8 16 23
'MRPL48 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.041 (Fisher's exact test), Q value = 1

Table S798.  Gene #101: 'MRPL48 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
MRPL48 MUTATED 0 2 1
MRPL48 WILD-TYPE 21 7 19

Figure S41.  Get High-res Image Gene #101: 'MRPL48 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'MRPL48 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.129 (Fisher's exact test), Q value = 1

Table S799.  Gene #101: 'MRPL48 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
MRPL48 MUTATED 0 0 3
MRPL48 WILD-TYPE 9 22 16
'PVRL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.41 (Fisher's exact test), Q value = 1

Table S800.  Gene #102: 'PVRL1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
PVRL1 MUTATED 1 4 0
PVRL1 WILD-TYPE 12 25 14
'PVRL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.845 (Fisher's exact test), Q value = 1

Table S801.  Gene #102: 'PVRL1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
PVRL1 MUTATED 1 3 1
PVRL1 WILD-TYPE 17 21 13
'PVRL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0932 (Fisher's exact test), Q value = 1

Table S802.  Gene #102: 'PVRL1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
PVRL1 MUTATED 2 0 3 0
PVRL1 WILD-TYPE 16 12 6 8
'PVRL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S803.  Gene #102: 'PVRL1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
PVRL1 MUTATED 0 2 3
PVRL1 WILD-TYPE 4 16 22
'PVRL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.215 (Fisher's exact test), Q value = 1

Table S804.  Gene #102: 'PVRL1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
PVRL1 MUTATED 2 0 3
PVRL1 WILD-TYPE 23 11 11
'PVRL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.451 (Fisher's exact test), Q value = 1

Table S805.  Gene #102: 'PVRL1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
PVRL1 MUTATED 1 3 1
PVRL1 WILD-TYPE 7 16 22
'PVRL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.485 (Fisher's exact test), Q value = 1

Table S806.  Gene #102: 'PVRL1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
PVRL1 MUTATED 1 1 3
PVRL1 WILD-TYPE 20 8 17
'PVRL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.478 (Fisher's exact test), Q value = 1

Table S807.  Gene #102: 'PVRL1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
PVRL1 MUTATED 1 1 3
PVRL1 WILD-TYPE 8 21 16
'ACIN1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S808.  Gene #103: 'ACIN1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
ACIN1 MUTATED 0 2 1
ACIN1 WILD-TYPE 13 27 13
'ACIN1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.331 (Fisher's exact test), Q value = 1

Table S809.  Gene #103: 'ACIN1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
ACIN1 MUTATED 0 1 2
ACIN1 WILD-TYPE 18 23 12
'ACIN1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.589 (Fisher's exact test), Q value = 1

Table S810.  Gene #103: 'ACIN1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
ACIN1 MUTATED 2 1 0
ACIN1 WILD-TYPE 23 10 14
'ACIN1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.755 (Fisher's exact test), Q value = 1

Table S811.  Gene #103: 'ACIN1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
ACIN1 MUTATED 0 2 1
ACIN1 WILD-TYPE 8 17 22
'ACIN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.582 (Fisher's exact test), Q value = 1

Table S812.  Gene #103: 'ACIN1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
ACIN1 MUTATED 1 1 1
ACIN1 WILD-TYPE 20 8 19
'ACIN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.776 (Fisher's exact test), Q value = 1

Table S813.  Gene #103: 'ACIN1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
ACIN1 MUTATED 0 1 2
ACIN1 WILD-TYPE 9 21 17
'MAML3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.879 (Fisher's exact test), Q value = 1

Table S814.  Gene #104: 'MAML3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
MAML3 MUTATED 2 4 1
MAML3 WILD-TYPE 11 25 13
'MAML3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.145 (Fisher's exact test), Q value = 1

Table S815.  Gene #104: 'MAML3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
MAML3 MUTATED 1 2 4
MAML3 WILD-TYPE 17 22 10
'MAML3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.5 (Fisher's exact test), Q value = 1

Table S816.  Gene #104: 'MAML3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
MAML3 MUTATED 4 1 2 0
MAML3 WILD-TYPE 14 11 7 8
'MAML3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.464 (Fisher's exact test), Q value = 1

Table S817.  Gene #104: 'MAML3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
MAML3 MUTATED 0 4 3
MAML3 WILD-TYPE 4 14 22
'MAML3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.325 (Fisher's exact test), Q value = 1

Table S818.  Gene #104: 'MAML3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
MAML3 MUTATED 4 0 3
MAML3 WILD-TYPE 21 11 11
'MAML3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.741 (Fisher's exact test), Q value = 1

Table S819.  Gene #104: 'MAML3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
MAML3 MUTATED 0 3 4
MAML3 WILD-TYPE 8 16 19
'MAML3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S820.  Gene #104: 'MAML3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
MAML3 MUTATED 3 1 3
MAML3 WILD-TYPE 18 8 17
'MAML3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S821.  Gene #104: 'MAML3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
MAML3 MUTATED 1 3 3
MAML3 WILD-TYPE 8 19 16
'EDC4 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S822.  Gene #105: 'EDC4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
EDC4 MUTATED 1 3 1
EDC4 WILD-TYPE 12 26 13
'EDC4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.712 (Fisher's exact test), Q value = 1

Table S823.  Gene #105: 'EDC4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
EDC4 MUTATED 1 2 2
EDC4 WILD-TYPE 17 22 12
'EDC4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.495 (Fisher's exact test), Q value = 1

Table S824.  Gene #105: 'EDC4 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
EDC4 MUTATED 2 0 0 1
EDC4 WILD-TYPE 16 12 9 7
'EDC4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.667 (Fisher's exact test), Q value = 1

Table S825.  Gene #105: 'EDC4 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
EDC4 MUTATED 0 2 1
EDC4 WILD-TYPE 4 16 24
'EDC4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S826.  Gene #105: 'EDC4 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
EDC4 MUTATED 3 1 1
EDC4 WILD-TYPE 22 10 13
'EDC4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S827.  Gene #105: 'EDC4 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
EDC4 MUTATED 1 2 2
EDC4 WILD-TYPE 7 17 21
'EDC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.384 (Fisher's exact test), Q value = 1

Table S828.  Gene #105: 'EDC4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
EDC4 MUTATED 2 2 1
EDC4 WILD-TYPE 19 7 19
'EDC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S829.  Gene #105: 'EDC4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
EDC4 MUTATED 1 2 2
EDC4 WILD-TYPE 8 20 17
'SETD1A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.795 (Fisher's exact test), Q value = 1

Table S830.  Gene #106: 'SETD1A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 13 29 14
SETD1A MUTATED 1 2 0
SETD1A WILD-TYPE 12 27 14
'SETD1A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S831.  Gene #106: 'SETD1A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 18 24 14
SETD1A MUTATED 1 1 1
SETD1A WILD-TYPE 17 23 13
'SETD1A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S832.  Gene #106: 'SETD1A MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 18 12 9 8
SETD1A MUTATED 1 1 1 0
SETD1A WILD-TYPE 17 11 8 8
'SETD1A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S833.  Gene #106: 'SETD1A MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 4 18 25
SETD1A MUTATED 0 1 2
SETD1A WILD-TYPE 4 17 23
'SETD1A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.786 (Fisher's exact test), Q value = 1

Table S834.  Gene #106: 'SETD1A MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 25 11 14
SETD1A MUTATED 1 1 1
SETD1A WILD-TYPE 24 10 13
'SETD1A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S835.  Gene #106: 'SETD1A MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 8 19 23
SETD1A MUTATED 0 1 2
SETD1A WILD-TYPE 8 18 21
'SETD1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.582 (Fisher's exact test), Q value = 1

Table S836.  Gene #106: 'SETD1A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 9 20
SETD1A MUTATED 1 1 1
SETD1A WILD-TYPE 20 8 19
'SETD1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.776 (Fisher's exact test), Q value = 1

Table S837.  Gene #106: 'SETD1A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 9 22 19
SETD1A MUTATED 1 1 1
SETD1A WILD-TYPE 8 21 18
Methods & Data
Input

  • Mutation data file = transformed.cor.cli.txt

  • Molecular subtypes file = PAAD-TP.transferedmergedcluster.txt

  • Number of patients = 57

  • Number of significantly mutated genes = 106

  • Number of Molecular subtypes = 8

  • Exclude genes that fewer than K tumors have mutations, K = 3

Fisher's exact test

For binary or multi-class clinical features (nominal or ordinal), two-tailed Fisher's exact tests (Fisher 1922) were used to estimate the P values using the 'fisher.test' function in R

Q value calculation

For multiple hypothesis correction, Q value is the False Discovery Rate (FDR) analogue of the P value (Benjamini and Hochberg 1995), defined as the minimum FDR at which the test may be called significant. We used the 'Benjamini and Hochberg' method of 'p.adjust' function in R to convert P values into Q values.

References
[1] Fisher, R.A., On the interpretation of chi-square from contingency tables, and the calculation of P, Journal of the Royal Statistical Society 85(1):87-94 (1922)
[2] Benjamini and Hochberg, Controlling the false discovery rate: a practical and powerful approach to multiple testing, Journal of the Royal Statistical Society Series B 59:289-300 (1995)
Made with Nozzle