
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/13/Correlate_Genomic_Events.R")
> result <- main("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/13/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-tTRUE", "-iD=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/PAAD-TP/6068710/transformed.cor.cli.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/PAAD-TP/6159668/PAAD-TP.transferedmergedcluster.txt", "-fF=", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=0.05", "-cQ=0.25", "-MF=ALL", "-oT=PAAD-TP", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "terrence_modification_tag"
[1] TRUE
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"         "-oT=PAAD-TP"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/PAAD-TP/6159668/PAAD-TP.transferedmergedcluster.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/PAAD-TP/6068710/transformed.cor.cli.txt"

nPatients in clinical file=92, in cluster file=57, common to both=57
[1] "Reduce the number of clustering variables from 108 to 106."
[1] 106  57
[1] "C15ORF24 MUTATION ANALYSIS"
[1] 3
  C15ORF24 MUTATED C15ORF24 WILD-TYPE 
                 6                 51 
  C15ORF24 MUTATED C15ORF24 WILD-TYPE 
                 6                 51 
[1] "IRS1 MUTATION ANALYSIS"
[1] 3
  IRS1 MUTATED IRS1 WILD-TYPE 
             5             52 
  IRS1 MUTATED IRS1 WILD-TYPE 
             5             52 
[1] "FYN MUTATION ANALYSIS"
[1] 3
  FYN MUTATED FYN WILD-TYPE 
            5            52 
  FYN MUTATED FYN WILD-TYPE 
            5            52 
[1] "FADS2 MUTATION ANALYSIS"
[1] 3
  FADS2 MUTATED FADS2 WILD-TYPE 
              5              52 
  FADS2 MUTATED FADS2 WILD-TYPE 
              5              52 
[1] "C14ORF49 MUTATION ANALYSIS"
[1] 3
  C14ORF49 MUTATED C14ORF49 WILD-TYPE 
                 9                 48 
  C14ORF49 MUTATED C14ORF49 WILD-TYPE 
                 9                 48 
[1] "FGF10 MUTATION ANALYSIS"
[1] 3
  FGF10 MUTATED FGF10 WILD-TYPE 
              6              51 
  FGF10 MUTATED FGF10 WILD-TYPE 
              6              51 
[1] "CEL MUTATION ANALYSIS"
[1] 3
  CEL MUTATED CEL WILD-TYPE 
            4            53 
  CEL MUTATED CEL WILD-TYPE 
            4            53 
[1] "CCR3 MUTATION ANALYSIS"
[1] 3
  CCR3 MUTATED CCR3 WILD-TYPE 
             5             52 
  CCR3 MUTATED CCR3 WILD-TYPE 
             5             52 
[1] "OR10A2 MUTATION ANALYSIS"
[1] 3
  OR10A2 MUTATED OR10A2 WILD-TYPE 
               6               51 
  OR10A2 MUTATED OR10A2 WILD-TYPE 
               6               51 
[1] "OR10A7 MUTATION ANALYSIS"
[1] 3
  OR10A7 MUTATED OR10A7 WILD-TYPE 
               9               48 
  OR10A7 MUTATED OR10A7 WILD-TYPE 
               9               48 
[1] "POP5 MUTATION ANALYSIS"
[1] 3
  POP5 MUTATED POP5 WILD-TYPE 
             5             52 
  POP5 MUTATED POP5 WILD-TYPE 
             5             52 
[1] "SRP14 MUTATION ANALYSIS"
[1] 3
  SRP14 MUTATED SRP14 WILD-TYPE 
              7              50 
  SRP14 MUTATED SRP14 WILD-TYPE 
              7              50 
[1] "WRN MUTATION ANALYSIS"
[1] 3
  WRN MUTATED WRN WILD-TYPE 
            5            52 
  WRN MUTATED WRN WILD-TYPE 
            5            52 
[1] "TMEM40 MUTATION ANALYSIS"
[1] 3
  TMEM40 MUTATED TMEM40 WILD-TYPE 
               9               48 
  TMEM40 MUTATED TMEM40 WILD-TYPE 
               9               48 
[1] "KRAS MUTATION ANALYSIS"
[1] 3
  KRAS MUTATED KRAS WILD-TYPE 
            33             24 
  KRAS MUTATED KRAS WILD-TYPE 
            33             24 
[1] "TP53 MUTATION ANALYSIS"
[1] 3
  TP53 MUTATED TP53 WILD-TYPE 
            37             20 
  TP53 MUTATED TP53 WILD-TYPE 
            37             20 
[1] "QRICH1 MUTATION ANALYSIS"
[1] 3
  QRICH1 MUTATED QRICH1 WILD-TYPE 
               7               50 
  QRICH1 MUTATED QRICH1 WILD-TYPE 
               7               50 
[1] "ST6GALNAC5 MUTATION ANALYSIS"
[1] 3
  ST6GALNAC5 MUTATED ST6GALNAC5 WILD-TYPE 
                   6                   51 
  ST6GALNAC5 MUTATED ST6GALNAC5 WILD-TYPE 
                   6                   51 
[1] "TNFSF9 MUTATION ANALYSIS"
[1] 3
  TNFSF9 MUTATED TNFSF9 WILD-TYPE 
               6               51 
  TNFSF9 MUTATED TNFSF9 WILD-TYPE 
               6               51 
[1] "CDKN2A MUTATION ANALYSIS"
[1] 3
  CDKN2A MUTATED CDKN2A WILD-TYPE 
              13               44 
  CDKN2A MUTATED CDKN2A WILD-TYPE 
              13               44 
[1] "SEH1L MUTATION ANALYSIS"
[1] 3
  SEH1L MUTATED SEH1L WILD-TYPE 
              8              49 
  SEH1L MUTATED SEH1L WILD-TYPE 
              8              49 
[1] "SCD MUTATION ANALYSIS"
[1] 3
  SCD MUTATED SCD WILD-TYPE 
            8            49 
  SCD MUTATED SCD WILD-TYPE 
            8            49 
[1] "TMC4 MUTATION ANALYSIS"
[1] 3
  TMC4 MUTATED TMC4 WILD-TYPE 
             9             48 
  TMC4 MUTATED TMC4 WILD-TYPE 
             9             48 
[1] "MED15 MUTATION ANALYSIS"
[1] 3
  MED15 MUTATED MED15 WILD-TYPE 
              9              48 
  MED15 MUTATED MED15 WILD-TYPE 
              9              48 
[1] "TNFRSF9 MUTATION ANALYSIS"
[1] 3
  TNFRSF9 MUTATED TNFRSF9 WILD-TYPE 
                6                51 
  TNFRSF9 MUTATED TNFRSF9 WILD-TYPE 
                6                51 
[1] "BRDT MUTATION ANALYSIS"
[1] 3
  BRDT MUTATED BRDT WILD-TYPE 
             8             49 
  BRDT MUTATED BRDT WILD-TYPE 
             8             49 
[1] "CXXC4 MUTATION ANALYSIS"
[1] 3
  CXXC4 MUTATED CXXC4 WILD-TYPE 
              6              51 
  CXXC4 MUTATED CXXC4 WILD-TYPE 
              6              51 
[1] "MBD3 MUTATION ANALYSIS"
[1] 3
  MBD3 MUTATED MBD3 WILD-TYPE 
             6             51 
  MBD3 MUTATED MBD3 WILD-TYPE 
             6             51 
[1] "TULP1 MUTATION ANALYSIS"
[1] 3
  TULP1 MUTATED TULP1 WILD-TYPE 
              6              51 
  TULP1 MUTATED TULP1 WILD-TYPE 
              6              51 
[1] "PHF13 MUTATION ANALYSIS"
[1] 3
  PHF13 MUTATED PHF13 WILD-TYPE 
              4              53 
  PHF13 MUTATED PHF13 WILD-TYPE 
              4              53 
[1] "BHLHB9 MUTATION ANALYSIS"
[1] 3
  BHLHB9 MUTATED BHLHB9 WILD-TYPE 
               5               52 
  BHLHB9 MUTATED BHLHB9 WILD-TYPE 
               5               52 
[1] "PRDM8 MUTATION ANALYSIS"
[1] 3
  PRDM8 MUTATED PRDM8 WILD-TYPE 
              6              51 
  PRDM8 MUTATED PRDM8 WILD-TYPE 
              6              51 
[1] "SMAD4 MUTATION ANALYSIS"
[1] 3
  SMAD4 MUTATED SMAD4 WILD-TYPE 
             10              47 
  SMAD4 MUTATED SMAD4 WILD-TYPE 
             10              47 
[1] "C14ORF43 MUTATION ANALYSIS"
[1] 3
  C14ORF43 MUTATED C14ORF43 WILD-TYPE 
                 7                 50 
  C14ORF43 MUTATED C14ORF43 WILD-TYPE 
                 7                 50 
[1] "MEPCE MUTATION ANALYSIS"
[1] 3
  MEPCE MUTATED MEPCE WILD-TYPE 
              7              50 
  MEPCE MUTATED MEPCE WILD-TYPE 
              7              50 
[1] "HVCN1 MUTATION ANALYSIS"
[1] 3
  HVCN1 MUTATED HVCN1 WILD-TYPE 
              4              53 
  HVCN1 MUTATED HVCN1 WILD-TYPE 
              4              53 
[1] "FOXP2 MUTATION ANALYSIS"
[1] 3
  FOXP2 MUTATED FOXP2 WILD-TYPE 
              8              49 
  FOXP2 MUTATED FOXP2 WILD-TYPE 
              8              49 
[1] "GRIN1 MUTATION ANALYSIS"
[1] 3
  GRIN1 MUTATED GRIN1 WILD-TYPE 
              5              52 
  GRIN1 MUTATED GRIN1 WILD-TYPE 
              5              52 
[1] "MAGEA10 MUTATION ANALYSIS"
[1] 3
  MAGEA10 MUTATED MAGEA10 WILD-TYPE 
                4                53 
  MAGEA10 MUTATED MAGEA10 WILD-TYPE 
                4                53 
[1] "C16ORF79 MUTATION ANALYSIS"
[1] 3
  C16ORF79 MUTATED C16ORF79 WILD-TYPE 
                 4                 53 
  C16ORF79 MUTATED C16ORF79 WILD-TYPE 
                 4                 53 
[1] "ERF MUTATION ANALYSIS"
[1] 3
  ERF MUTATED ERF WILD-TYPE 
            6            51 
  ERF MUTATED ERF WILD-TYPE 
            6            51 
[1] "IFNGR2 MUTATION ANALYSIS"
[1] 3
  IFNGR2 MUTATED IFNGR2 WILD-TYPE 
               4               53 
  IFNGR2 MUTATED IFNGR2 WILD-TYPE 
               4               53 
[1] "OLIG3 MUTATION ANALYSIS"
[1] 3
  OLIG3 MUTATED OLIG3 WILD-TYPE 
              5              52 
  OLIG3 MUTATED OLIG3 WILD-TYPE 
              5              52 
[1] "NDEL1 MUTATION ANALYSIS"
[1] 3
  NDEL1 MUTATED NDEL1 WILD-TYPE 
              4              53 
  NDEL1 MUTATED NDEL1 WILD-TYPE 
              4              53 
[1] "EGR1 MUTATION ANALYSIS"
[1] 3
  EGR1 MUTATED EGR1 WILD-TYPE 
             8             49 
  EGR1 MUTATED EGR1 WILD-TYPE 
             8             49 
[1] "CDH3 MUTATION ANALYSIS"
[1] 3
  CDH3 MUTATED CDH3 WILD-TYPE 
             4             53 
  CDH3 MUTATED CDH3 WILD-TYPE 
             4             53 
[1] "PCDHAC2 MUTATION ANALYSIS"
[1] 3
  PCDHAC2 MUTATED PCDHAC2 WILD-TYPE 
                9                48 
  PCDHAC2 MUTATED PCDHAC2 WILD-TYPE 
                9                48 
[1] "ZFP36 MUTATION ANALYSIS"
[1] 3
  ZFP36 MUTATED ZFP36 WILD-TYPE 
              4              53 
  ZFP36 MUTATED ZFP36 WILD-TYPE 
              4              53 
[1] "NR4A3 MUTATION ANALYSIS"
[1] 3
  NR4A3 MUTATED NR4A3 WILD-TYPE 
              5              52 
  NR4A3 MUTATED NR4A3 WILD-TYPE 
              5              52 
[1] "RAB11FIP5 MUTATION ANALYSIS"
[1] 3
  RAB11FIP5 MUTATED RAB11FIP5 WILD-TYPE 
                  5                  52 
  RAB11FIP5 MUTATED RAB11FIP5 WILD-TYPE 
                  5                  52 
[1] "OTUD4 MUTATION ANALYSIS"
[1] 3
  OTUD4 MUTATED OTUD4 WILD-TYPE 
              7              50 
  OTUD4 MUTATED OTUD4 WILD-TYPE 
              7              50 
[1] "PPARGC1B MUTATION ANALYSIS"
[1] 3
  PPARGC1B MUTATED PPARGC1B WILD-TYPE 
                 7                 50 
  PPARGC1B MUTATED PPARGC1B WILD-TYPE 
                 7                 50 
[1] "PDZD2 MUTATION ANALYSIS"
[1] 3
  PDZD2 MUTATED PDZD2 WILD-TYPE 
              9              48 
  PDZD2 MUTATED PDZD2 WILD-TYPE 
              9              48 
[1] "NPNT MUTATION ANALYSIS"
[1] 3
  NPNT MUTATED NPNT WILD-TYPE 
             4             53 
  NPNT MUTATED NPNT WILD-TYPE 
             4             53 
[1] "MED9 MUTATION ANALYSIS"
[1] 3
  MED9 MUTATED MED9 WILD-TYPE 
             3             54 
  MED9 MUTATED MED9 WILD-TYPE 
             3             54 
[1] "BCL2L1 MUTATION ANALYSIS"
[1] 3
  BCL2L1 MUTATED BCL2L1 WILD-TYPE 
               3               54 
  BCL2L1 MUTATED BCL2L1 WILD-TYPE 
               3               54 
[1] "CPLX3 MUTATION ANALYSIS"
[1] 3
  CPLX3 MUTATED CPLX3 WILD-TYPE 
              3              54 
  CPLX3 MUTATED CPLX3 WILD-TYPE 
              3              54 
[1] "IRX4 MUTATION ANALYSIS"
[1] 3
  IRX4 MUTATED IRX4 WILD-TYPE 
             3             54 
  IRX4 MUTATED IRX4 WILD-TYPE 
             3             54 
[1] "NFAT5 MUTATION ANALYSIS"
[1] 3
  NFAT5 MUTATED NFAT5 WILD-TYPE 
              8              49 
  NFAT5 MUTATED NFAT5 WILD-TYPE 
              8              49 
[1] "WASF3 MUTATION ANALYSIS"
[1] 3
  WASF3 MUTATED WASF3 WILD-TYPE 
              5              52 
  WASF3 MUTATED WASF3 WILD-TYPE 
              5              52 
[1] "ABCC2 MUTATION ANALYSIS"
[1] 3
  ABCC2 MUTATED ABCC2 WILD-TYPE 
              6              51 
  ABCC2 MUTATED ABCC2 WILD-TYPE 
              6              51 
[1] "ATP13A3 MUTATION ANALYSIS"
[1] 3
  ATP13A3 MUTATED ATP13A3 WILD-TYPE 
                4                53 
  ATP13A3 MUTATED ATP13A3 WILD-TYPE 
                4                53 
[1] "ARHGAP18 MUTATION ANALYSIS"
[1] 3
  ARHGAP18 MUTATED ARHGAP18 WILD-TYPE 
                 4                 53 
  ARHGAP18 MUTATED ARHGAP18 WILD-TYPE 
                 4                 53 
[1] "CIR1 MUTATION ANALYSIS"
[1] 3
  CIR1 MUTATED CIR1 WILD-TYPE 
             3             54 
  CIR1 MUTATED CIR1 WILD-TYPE 
             3             54 
[1] "KIAA0020 MUTATION ANALYSIS"
[1] 3
  KIAA0020 MUTATED KIAA0020 WILD-TYPE 
                 4                 53 
  KIAA0020 MUTATED KIAA0020 WILD-TYPE 
                 4                 53 
[1] "ZNF608 MUTATION ANALYSIS"
[1] 3
  ZNF608 MUTATED ZNF608 WILD-TYPE 
               6               51 
  ZNF608 MUTATED ZNF608 WILD-TYPE 
               6               51 
[1] "NEDD4L MUTATION ANALYSIS"
[1] 3
  NEDD4L MUTATED NEDD4L WILD-TYPE 
               6               51 
  NEDD4L MUTATED NEDD4L WILD-TYPE 
               6               51 
[1] "THBS4 MUTATION ANALYSIS"
[1] 3
  THBS4 MUTATED THBS4 WILD-TYPE 
              6              51 
  THBS4 MUTATED THBS4 WILD-TYPE 
              6              51 
[1] "MMRN1 MUTATION ANALYSIS"
[1] 3
  MMRN1 MUTATED MMRN1 WILD-TYPE 
              6              51 
  MMRN1 MUTATED MMRN1 WILD-TYPE 
              6              51 
[1] "GPR25 MUTATION ANALYSIS"
[1] 3
  GPR25 MUTATED GPR25 WILD-TYPE 
              3              54 
  GPR25 MUTATED GPR25 WILD-TYPE 
              3              54 
[1] "SORBS2 MUTATION ANALYSIS"
[1] 3
  SORBS2 MUTATED SORBS2 WILD-TYPE 
               6               51 
  SORBS2 MUTATED SORBS2 WILD-TYPE 
               6               51 
[1] "SULT1C3 MUTATION ANALYSIS"
[1] 3
  SULT1C3 MUTATED SULT1C3 WILD-TYPE 
                3                54 
  SULT1C3 MUTATED SULT1C3 WILD-TYPE 
                3                54 
[1] "ECSIT MUTATION ANALYSIS"
[1] 3
  ECSIT MUTATED ECSIT WILD-TYPE 
              4              53 
  ECSIT MUTATED ECSIT WILD-TYPE 
              4              53 
[1] "ZNF326 MUTATION ANALYSIS"
[1] 3
  ZNF326 MUTATED ZNF326 WILD-TYPE 
               4               53 
  ZNF326 MUTATED ZNF326 WILD-TYPE 
               4               53 
[1] "C15ORF52 MUTATION ANALYSIS"
[1] 3
  C15ORF52 MUTATED C15ORF52 WILD-TYPE 
                 3                 54 
  C15ORF52 MUTATED C15ORF52 WILD-TYPE 
                 3                 54 
[1] "SLC39A5 MUTATION ANALYSIS"
[1] 3
  SLC39A5 MUTATED SLC39A5 WILD-TYPE 
                3                54 
  SLC39A5 MUTATED SLC39A5 WILD-TYPE 
                3                54 
[1] "SLC24A1 MUTATION ANALYSIS"
[1] 3
  SLC24A1 MUTATED SLC24A1 WILD-TYPE 
                4                53 
  SLC24A1 MUTATED SLC24A1 WILD-TYPE 
                4                53 
[1] "PUM2 MUTATION ANALYSIS"
[1] 3
  PUM2 MUTATED PUM2 WILD-TYPE 
             5             52 
  PUM2 MUTATED PUM2 WILD-TYPE 
             5             52 
[1] "SYT2 MUTATION ANALYSIS"
[1] 3
  SYT2 MUTATED SYT2 WILD-TYPE 
             5             52 
  SYT2 MUTATED SYT2 WILD-TYPE 
             5             52 
[1] "SLITRK5 MUTATION ANALYSIS"
[1] 3
  SLITRK5 MUTATED SLITRK5 WILD-TYPE 
                6                51 
  SLITRK5 MUTATED SLITRK5 WILD-TYPE 
                6                51 
[1] "NAP1L3 MUTATION ANALYSIS"
[1] 3
  NAP1L3 MUTATED NAP1L3 WILD-TYPE 
               3               54 
  NAP1L3 MUTATED NAP1L3 WILD-TYPE 
               3               54 
[1] "PHF14 MUTATION ANALYSIS"
[1] 3
  PHF14 MUTATED PHF14 WILD-TYPE 
              3              54 
  PHF14 MUTATED PHF14 WILD-TYPE 
              3              54 
[1] "CCDC28B MUTATION ANALYSIS"
[1] 3
  CCDC28B MUTATED CCDC28B WILD-TYPE 
                4                53 
  CCDC28B MUTATED CCDC28B WILD-TYPE 
                4                53 
[1] "PDE12 MUTATION ANALYSIS"
[1] 3
  PDE12 MUTATED PDE12 WILD-TYPE 
              3              54 
  PDE12 MUTATED PDE12 WILD-TYPE 
              3              54 
[1] "FLAD1 MUTATION ANALYSIS"
[1] 3
  FLAD1 MUTATED FLAD1 WILD-TYPE 
              3              54 
  FLAD1 MUTATED FLAD1 WILD-TYPE 
              3              54 
[1] "ENG MUTATION ANALYSIS"
[1] 3
  ENG MUTATED ENG WILD-TYPE 
            3            54 
  ENG MUTATED ENG WILD-TYPE 
            3            54 
[1] "PABPC1 MUTATION ANALYSIS"
[1] 3
  PABPC1 MUTATED PABPC1 WILD-TYPE 
               4               53 
  PABPC1 MUTATED PABPC1 WILD-TYPE 
               4               53 
[1] "ATG16L2 MUTATION ANALYSIS"
[1] 3
  ATG16L2 MUTATED ATG16L2 WILD-TYPE 
                3                54 
  ATG16L2 MUTATED ATG16L2 WILD-TYPE 
                3                54 
[1] "LRCH1 MUTATION ANALYSIS"
[1] 3
  LRCH1 MUTATED LRCH1 WILD-TYPE 
              7              50 
  LRCH1 MUTATED LRCH1 WILD-TYPE 
              7              50 
[1] "PLCZ1 MUTATION ANALYSIS"
[1] 3
  PLCZ1 MUTATED PLCZ1 WILD-TYPE 
              3              54 
  PLCZ1 MUTATED PLCZ1 WILD-TYPE 
              3              54 
[1] "TAOK2 MUTATION ANALYSIS"
[1] 3
  TAOK2 MUTATED TAOK2 WILD-TYPE 
              6              51 
  TAOK2 MUTATED TAOK2 WILD-TYPE 
              6              51 
[1] "ZMIZ1 MUTATION ANALYSIS"
[1] 3
  ZMIZ1 MUTATED ZMIZ1 WILD-TYPE 
              6              51 
  ZMIZ1 MUTATED ZMIZ1 WILD-TYPE 
              6              51 
[1] "SYT15 MUTATION ANALYSIS"
[1] 3
  SYT15 MUTATED SYT15 WILD-TYPE 
              6              51 
  SYT15 MUTATED SYT15 WILD-TYPE 
              6              51 
[1] "LRTM1 MUTATION ANALYSIS"
[1] 3
  LRTM1 MUTATED LRTM1 WILD-TYPE 
              3              54 
  LRTM1 MUTATED LRTM1 WILD-TYPE 
              3              54 
[1] "TIMM50 MUTATION ANALYSIS"
[1] 3
  TIMM50 MUTATED TIMM50 WILD-TYPE 
               4               53 
  TIMM50 MUTATED TIMM50 WILD-TYPE 
               4               53 
[1] "CCNK MUTATION ANALYSIS"
[1] 3
  CCNK MUTATED CCNK WILD-TYPE 
             4             53 
  CCNK MUTATED CCNK WILD-TYPE 
             4             53 
[1] "TTK MUTATION ANALYSIS"
[1] 3
  TTK MUTATED TTK WILD-TYPE 
            5            52 
  TTK MUTATED TTK WILD-TYPE 
            5            52 
[1] "TMEM175 MUTATION ANALYSIS"
[1] 3
  TMEM175 MUTATED TMEM175 WILD-TYPE 
                4                53 
  TMEM175 MUTATED TMEM175 WILD-TYPE 
                4                53 
[1] "CD93 MUTATION ANALYSIS"
[1] 3
  CD93 MUTATED CD93 WILD-TYPE 
             5             52 
  CD93 MUTATED CD93 WILD-TYPE 
             5             52 
[1] "C19ORF55 MUTATION ANALYSIS"
[1] 3
  C19ORF55 MUTATED C19ORF55 WILD-TYPE 
                 4                 53 
  C19ORF55 MUTATED C19ORF55 WILD-TYPE 
                 4                 53 
[1] "MRPL48 MUTATION ANALYSIS"
[1] 3
  MRPL48 MUTATED MRPL48 WILD-TYPE 
               3               54 
  MRPL48 MUTATED MRPL48 WILD-TYPE 
               3               54 
[1] "PVRL1 MUTATION ANALYSIS"
[1] 3
  PVRL1 MUTATED PVRL1 WILD-TYPE 
              5              52 
  PVRL1 MUTATED PVRL1 WILD-TYPE 
              5              52 
[1] "ACIN1 MUTATION ANALYSIS"
[1] 3
  ACIN1 MUTATED ACIN1 WILD-TYPE 
              3              54 
  ACIN1 MUTATED ACIN1 WILD-TYPE 
              3              54 
[1] "MAML3 MUTATION ANALYSIS"
[1] 3
  MAML3 MUTATED MAML3 WILD-TYPE 
              7              50 
  MAML3 MUTATED MAML3 WILD-TYPE 
              7              50 
[1] "EDC4 MUTATION ANALYSIS"
[1] 3
  EDC4 MUTATED EDC4 WILD-TYPE 
             5             52 
  EDC4 MUTATED EDC4 WILD-TYPE 
             5             52 
[1] "SETD1A MUTATION ANALYSIS"
[1] 3
  SETD1A MUTATED SETD1A WILD-TYPE 
               3               54 
  SETD1A MUTATED SETD1A WILD-TYPE 
               3               54 
[1] "terrence_modification_tag"
[1] TRUE
[1] "data2feature, selection="
[1] "CN_CNMF"                     "METHLYATION_CNMF"           
[3] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
[5] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[7] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 8 rows and 57 columns.

Variable 1:'CN_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'METHLYATION_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'MRNASEQ_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'MIRSEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MIRSEQ_MATURE_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "rownames(nsurv.mat)"
[1] "CN_CNMF"                     "METHLYATION_CNMF"           
[3] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
[5] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[7] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 57 columns, 0 survival variables, and 8 non-survival variables.
CN_CNMF, nv=3, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=4, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE

Clustering(1) Variable = C15ORF24 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C15ORF24 MUTATED        1      5      0
  C15ORF24 WILD-TYPE     12     24     14
D1V1, multiclass
        clus
vv       C15ORF24 MUTATED C15ORF24 WILD-TYPE
  CLUS_1                1                 12
  CLUS_2                5                 24
  CLUS_3                0                 14
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C15ORF24 MUTATED        1      3      2
  C15ORF24 WILD-TYPE     17     21     12
D1V2, multiclass
        clus
vv       C15ORF24 MUTATED C15ORF24 WILD-TYPE
  CLUS_1                1                 17
  CLUS_2                3                 21
  CLUS_3                2                 12
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C15ORF24 MUTATED        1      2      2      1
  C15ORF24 WILD-TYPE     17     10      7      7
D1V3, multiclass
        clus
vv       C15ORF24 MUTATED C15ORF24 WILD-TYPE
  CLUS_1                1                 17
  CLUS_2                2                 10
  CLUS_3                2                  7
  CLUS_4                1                  7
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C15ORF24 MUTATED        1      1      4
  C15ORF24 WILD-TYPE      3     17     21
D1V4, multiclass
        clus
vv       C15ORF24 MUTATED C15ORF24 WILD-TYPE
  CLUS_1                1                  3
  CLUS_2                1                 17
  CLUS_3                4                 21
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C15ORF24 MUTATED        2      2      2
  C15ORF24 WILD-TYPE     23      9     12
D1V5, multiclass
        clus
vv       C15ORF24 MUTATED C15ORF24 WILD-TYPE
  CLUS_1                2                 23
  CLUS_2                2                  9
  CLUS_3                2                 12
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C15ORF24 MUTATED        1      3      2
  C15ORF24 WILD-TYPE      7     16     21
D1V6, multiclass
        clus
vv       C15ORF24 MUTATED C15ORF24 WILD-TYPE
  CLUS_1                1                  7
  CLUS_2                3                 16
  CLUS_3                2                 21
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C15ORF24 MUTATED        1      2      3
  C15ORF24 WILD-TYPE     20      7     17
D1V7, multiclass
        clus
vv       C15ORF24 MUTATED C15ORF24 WILD-TYPE
  CLUS_1                1                 20
  CLUS_2                2                  7
  CLUS_3                3                 17
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C15ORF24 MUTATED        2      1      3
  C15ORF24 WILD-TYPE      7     21     16
D1V8, multiclass
        clus
vv       C15ORF24 MUTATED C15ORF24 WILD-TYPE
  CLUS_1                2                  7
  CLUS_2                1                 21
  CLUS_3                3                 16

Clustering(2) Variable = IRS1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IRS1 MUTATED        2      2      0
  IRS1 WILD-TYPE     11     27     14
D2V1, multiclass
        clus
vv       IRS1 MUTATED IRS1 WILD-TYPE
  CLUS_1            2             11
  CLUS_2            2             27
  CLUS_3            0             14
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IRS1 MUTATED        2      3      0
  IRS1 WILD-TYPE     16     21     14
D2V2, multiclass
        clus
vv       IRS1 MUTATED IRS1 WILD-TYPE
  CLUS_1            2             16
  CLUS_2            3             21
  CLUS_3            0             14
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IRS1 MUTATED        2      2      0      1
  IRS1 WILD-TYPE     16     10      9      7
D2V3, multiclass
        clus
vv       IRS1 MUTATED IRS1 WILD-TYPE
  CLUS_1            2             16
  CLUS_2            2             10
  CLUS_3            0              9
  CLUS_4            1              7
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IRS1 MUTATED        0      2      3
  IRS1 WILD-TYPE      4     16     22
D2V4, multiclass
        clus
vv       IRS1 MUTATED IRS1 WILD-TYPE
  CLUS_1            0              4
  CLUS_2            2             16
  CLUS_3            3             22
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IRS1 MUTATED        2      1      2
  IRS1 WILD-TYPE     23     10     12
D2V5, multiclass
        clus
vv       IRS1 MUTATED IRS1 WILD-TYPE
  CLUS_1            2             23
  CLUS_2            1             10
  CLUS_3            2             12
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IRS1 MUTATED        1      2      2
  IRS1 WILD-TYPE      7     17     21
D2V6, multiclass
        clus
vv       IRS1 MUTATED IRS1 WILD-TYPE
  CLUS_1            1              7
  CLUS_2            2             17
  CLUS_3            2             21
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IRS1 MUTATED        2      0      3
  IRS1 WILD-TYPE     19      9     17
D2V7, multiclass
        clus
vv       IRS1 MUTATED IRS1 WILD-TYPE
  CLUS_1            2             19
  CLUS_2            0              9
  CLUS_3            3             17
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IRS1 MUTATED        1      2      2
  IRS1 WILD-TYPE      8     20     17
D2V8, multiclass
        clus
vv       IRS1 MUTATED IRS1 WILD-TYPE
  CLUS_1            1              8
  CLUS_2            2             20
  CLUS_3            2             17

Clustering(3) Variable = FYN MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  FYN MUTATED        0      5      0
  FYN WILD-TYPE     13     24     14
D3V1, multiclass
        clus
vv       FYN MUTATED FYN WILD-TYPE
  CLUS_1           0            13
  CLUS_2           5            24
  CLUS_3           0            14
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  FYN MUTATED        0      3      2
  FYN WILD-TYPE     18     21     12
D3V2, multiclass
        clus
vv       FYN MUTATED FYN WILD-TYPE
  CLUS_1           0            18
  CLUS_2           3            21
  CLUS_3           2            12
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FYN MUTATED        0      1      3      1
  FYN WILD-TYPE     18     11      6      7
D3V3, multiclass
        clus
vv       FYN MUTATED FYN WILD-TYPE
  CLUS_1           0            18
  CLUS_2           1            11
  CLUS_3           3             6
  CLUS_4           1             7
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  FYN MUTATED        1      0      4
  FYN WILD-TYPE      3     18     21
D3V4, multiclass
        clus
vv       FYN MUTATED FYN WILD-TYPE
  CLUS_1           1             3
  CLUS_2           0            18
  CLUS_3           4            21
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  FYN MUTATED        1      1      3
  FYN WILD-TYPE     24     10     11
D3V5, multiclass
        clus
vv       FYN MUTATED FYN WILD-TYPE
  CLUS_1           1            24
  CLUS_2           1            10
  CLUS_3           3            11
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  FYN MUTATED        1      3      1
  FYN WILD-TYPE      7     16     22
D3V6, multiclass
        clus
vv       FYN MUTATED FYN WILD-TYPE
  CLUS_1           1             7
  CLUS_2           3            16
  CLUS_3           1            22
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  FYN MUTATED        0      1      4
  FYN WILD-TYPE     21      8     16
D3V7, multiclass
        clus
vv       FYN MUTATED FYN WILD-TYPE
  CLUS_1           0            21
  CLUS_2           1             8
  CLUS_3           4            16
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  FYN MUTATED        2      0      3
  FYN WILD-TYPE      7     22     16
D3V8, multiclass
        clus
vv       FYN MUTATED FYN WILD-TYPE
  CLUS_1           2             7
  CLUS_2           0            22
  CLUS_3           3            16

Clustering(4) Variable = FADS2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FADS2 MUTATED        1      3      1
  FADS2 WILD-TYPE     12     26     13
D4V1, multiclass
        clus
vv       FADS2 MUTATED FADS2 WILD-TYPE
  CLUS_1             1              12
  CLUS_2             3              26
  CLUS_3             1              13
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FADS2 MUTATED        1      2      2
  FADS2 WILD-TYPE     17     22     12
D4V2, multiclass
        clus
vv       FADS2 MUTATED FADS2 WILD-TYPE
  CLUS_1             1              17
  CLUS_2             2              22
  CLUS_3             2              12
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FADS2 MUTATED        2      0      2      1
  FADS2 WILD-TYPE     16     12      7      7
D4V3, multiclass
        clus
vv       FADS2 MUTATED FADS2 WILD-TYPE
  CLUS_1             2              16
  CLUS_2             0              12
  CLUS_3             2               7
  CLUS_4             1               7
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FADS2 MUTATED        0      2      3
  FADS2 WILD-TYPE      4     16     22
D4V4, multiclass
        clus
vv       FADS2 MUTATED FADS2 WILD-TYPE
  CLUS_1             0               4
  CLUS_2             2              16
  CLUS_3             3              22
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FADS2 MUTATED        2      0      3
  FADS2 WILD-TYPE     23     11     11
D4V5, multiclass
        clus
vv       FADS2 MUTATED FADS2 WILD-TYPE
  CLUS_1             2              23
  CLUS_2             0              11
  CLUS_3             3              11
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FADS2 MUTATED        2      0      3
  FADS2 WILD-TYPE      6     19     20
D4V6, multiclass
        clus
vv       FADS2 MUTATED FADS2 WILD-TYPE
  CLUS_1             2               6
  CLUS_2             0              19
  CLUS_3             3              20
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FADS2 MUTATED        2      0      3
  FADS2 WILD-TYPE     19      9     17
D4V7, multiclass
        clus
vv       FADS2 MUTATED FADS2 WILD-TYPE
  CLUS_1             2              19
  CLUS_2             0               9
  CLUS_3             3              17
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FADS2 MUTATED        3      2      0
  FADS2 WILD-TYPE      6     20     19
D4V8, multiclass
        clus
vv       FADS2 MUTATED FADS2 WILD-TYPE
  CLUS_1             3               6
  CLUS_2             2              20
  CLUS_3             0              19

Clustering(5) Variable = C14ORF49 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C14ORF49 MUTATED        1      7      1
  C14ORF49 WILD-TYPE     12     22     13
D5V1, multiclass
        clus
vv       C14ORF49 MUTATED C14ORF49 WILD-TYPE
  CLUS_1                1                 12
  CLUS_2                7                 22
  CLUS_3                1                 13
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C14ORF49 MUTATED        1      7      1
  C14ORF49 WILD-TYPE     17     17     13
D5V2, multiclass
        clus
vv       C14ORF49 MUTATED C14ORF49 WILD-TYPE
  CLUS_1                1                 17
  CLUS_2                7                 17
  CLUS_3                1                 13
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C14ORF49 MUTATED        1      2      3      1
  C14ORF49 WILD-TYPE     17     10      6      7
D5V3, multiclass
        clus
vv       C14ORF49 MUTATED C14ORF49 WILD-TYPE
  CLUS_1                1                 17
  CLUS_2                2                 10
  CLUS_3                3                  6
  CLUS_4                1                  7
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C14ORF49 MUTATED        0      1      6
  C14ORF49 WILD-TYPE      4     17     19
D5V4, multiclass
        clus
vv       C14ORF49 MUTATED C14ORF49 WILD-TYPE
  CLUS_1                0                  4
  CLUS_2                1                 17
  CLUS_3                6                 19
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C14ORF49 MUTATED        2      3      4
  C14ORF49 WILD-TYPE     23      8     10
D5V5, multiclass
        clus
vv       C14ORF49 MUTATED C14ORF49 WILD-TYPE
  CLUS_1                2                 23
  CLUS_2                3                  8
  CLUS_3                4                 10
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C14ORF49 MUTATED        3      4      2
  C14ORF49 WILD-TYPE      5     15     21
D5V6, multiclass
        clus
vv       C14ORF49 MUTATED C14ORF49 WILD-TYPE
  CLUS_1                3                  5
  CLUS_2                4                 15
  CLUS_3                2                 21
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C14ORF49 MUTATED        2      2      5
  C14ORF49 WILD-TYPE     19      7     15
D5V7, multiclass
        clus
vv       C14ORF49 MUTATED C14ORF49 WILD-TYPE
  CLUS_1                2                 19
  CLUS_2                2                  7
  CLUS_3                5                 15
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C14ORF49 MUTATED        3      2      4
  C14ORF49 WILD-TYPE      6     20     15
D5V8, multiclass
        clus
vv       C14ORF49 MUTATED C14ORF49 WILD-TYPE
  CLUS_1                3                  6
  CLUS_2                2                 20
  CLUS_3                4                 15

Clustering(6) Variable = FGF10 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FGF10 MUTATED        1      4      1
  FGF10 WILD-TYPE     12     25     13
D6V1, multiclass
        clus
vv       FGF10 MUTATED FGF10 WILD-TYPE
  CLUS_1             1              12
  CLUS_2             4              25
  CLUS_3             1              13
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FGF10 MUTATED        0      3      3
  FGF10 WILD-TYPE     18     21     11
D6V2, multiclass
        clus
vv       FGF10 MUTATED FGF10 WILD-TYPE
  CLUS_1             0              18
  CLUS_2             3              21
  CLUS_3             3              11
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FGF10 MUTATED        1      2      2      1
  FGF10 WILD-TYPE     17     10      7      7
D6V3, multiclass
        clus
vv       FGF10 MUTATED FGF10 WILD-TYPE
  CLUS_1             1              17
  CLUS_2             2              10
  CLUS_3             2               7
  CLUS_4             1               7
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FGF10 MUTATED        0      1      5
  FGF10 WILD-TYPE      4     17     20
D6V4, multiclass
        clus
vv       FGF10 MUTATED FGF10 WILD-TYPE
  CLUS_1             0               4
  CLUS_2             1              17
  CLUS_3             5              20
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FGF10 MUTATED        1      2      3
  FGF10 WILD-TYPE     24      9     11
D6V5, multiclass
        clus
vv       FGF10 MUTATED FGF10 WILD-TYPE
  CLUS_1             1              24
  CLUS_2             2               9
  CLUS_3             3              11
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FGF10 MUTATED        1      3      2
  FGF10 WILD-TYPE      7     16     21
D6V6, multiclass
        clus
vv       FGF10 MUTATED FGF10 WILD-TYPE
  CLUS_1             1               7
  CLUS_2             3              16
  CLUS_3             2              21
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FGF10 MUTATED        1      0      5
  FGF10 WILD-TYPE     20      9     15
D6V7, multiclass
        clus
vv       FGF10 MUTATED FGF10 WILD-TYPE
  CLUS_1             1              20
  CLUS_2             0               9
  CLUS_3             5              15
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FGF10 MUTATED        2      1      3
  FGF10 WILD-TYPE      7     21     16
D6V8, multiclass
        clus
vv       FGF10 MUTATED FGF10 WILD-TYPE
  CLUS_1             2               7
  CLUS_2             1              21
  CLUS_3             3              16

Clustering(7) Variable = CEL MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  CEL MUTATED        1      3      0
  CEL WILD-TYPE     12     26     14
D7V1, multiclass
        clus
vv       CEL MUTATED CEL WILD-TYPE
  CLUS_1           1            12
  CLUS_2           3            26
  CLUS_3           0            14
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  CEL MUTATED        1      2      1
  CEL WILD-TYPE     17     22     13
D7V2, multiclass
        clus
vv       CEL MUTATED CEL WILD-TYPE
  CLUS_1           1            17
  CLUS_2           2            22
  CLUS_3           1            13
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CEL MUTATED        1      0      3      0
  CEL WILD-TYPE     17     12      6      8
D7V3, multiclass
        clus
vv       CEL MUTATED CEL WILD-TYPE
  CLUS_1           1            17
  CLUS_2           0            12
  CLUS_3           3             6
  CLUS_4           0             8
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  CEL MUTATED        0      1      3
  CEL WILD-TYPE      4     17     22
D7V4, multiclass
        clus
vv       CEL MUTATED CEL WILD-TYPE
  CLUS_1           0             4
  CLUS_2           1            17
  CLUS_3           3            22
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  CEL MUTATED        1      0      3
  CEL WILD-TYPE     24     11     11
D7V5, multiclass
        clus
vv       CEL MUTATED CEL WILD-TYPE
  CLUS_1           1            24
  CLUS_2           0            11
  CLUS_3           3            11
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  CEL MUTATED        1      1      2
  CEL WILD-TYPE      7     18     21
D7V6, multiclass
        clus
vv       CEL MUTATED CEL WILD-TYPE
  CLUS_1           1             7
  CLUS_2           1            18
  CLUS_3           2            21
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  CEL MUTATED        1      0      3
  CEL WILD-TYPE     20      9     17
D7V7, multiclass
        clus
vv       CEL MUTATED CEL WILD-TYPE
  CLUS_1           1            20
  CLUS_2           0             9
  CLUS_3           3            17
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  CEL MUTATED        2      1      1
  CEL WILD-TYPE      7     21     18
D7V8, multiclass
        clus
vv       CEL MUTATED CEL WILD-TYPE
  CLUS_1           2             7
  CLUS_2           1            21
  CLUS_3           1            18

Clustering(8) Variable = CCR3 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CCR3 MUTATED        2      2      1
  CCR3 WILD-TYPE     11     27     13
D8V1, multiclass
        clus
vv       CCR3 MUTATED CCR3 WILD-TYPE
  CLUS_1            2             11
  CLUS_2            2             27
  CLUS_3            1             13
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CCR3 MUTATED        1      2      2
  CCR3 WILD-TYPE     17     22     12
D8V2, multiclass
        clus
vv       CCR3 MUTATED CCR3 WILD-TYPE
  CLUS_1            1             17
  CLUS_2            2             22
  CLUS_3            2             12
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCR3 MUTATED        2      0      1      1
  CCR3 WILD-TYPE     16     12      8      7
D8V3, multiclass
        clus
vv       CCR3 MUTATED CCR3 WILD-TYPE
  CLUS_1            2             16
  CLUS_2            0             12
  CLUS_3            1              8
  CLUS_4            1              7
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CCR3 MUTATED        0      2      2
  CCR3 WILD-TYPE      4     16     23
D8V4, multiclass
        clus
vv       CCR3 MUTATED CCR3 WILD-TYPE
  CLUS_1            0              4
  CLUS_2            2             16
  CLUS_3            2             23
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CCR3 MUTATED        3      0      2
  CCR3 WILD-TYPE     22     11     12
D8V5, multiclass
        clus
vv       CCR3 MUTATED CCR3 WILD-TYPE
  CLUS_1            3             22
  CLUS_2            0             11
  CLUS_3            2             12
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CCR3 MUTATED        1      1      3
  CCR3 WILD-TYPE      7     18     20
D8V6, multiclass
        clus
vv       CCR3 MUTATED CCR3 WILD-TYPE
  CLUS_1            1              7
  CLUS_2            1             18
  CLUS_3            3             20
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CCR3 MUTATED        3      0      2
  CCR3 WILD-TYPE     18      9     18
D8V7, multiclass
        clus
vv       CCR3 MUTATED CCR3 WILD-TYPE
  CLUS_1            3             18
  CLUS_2            0              9
  CLUS_3            2             18
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CCR3 MUTATED        1      3      1
  CCR3 WILD-TYPE      8     19     18
D8V8, multiclass
        clus
vv       CCR3 MUTATED CCR3 WILD-TYPE
  CLUS_1            1              8
  CLUS_2            3             19
  CLUS_3            1             18

Clustering(9) Variable = OR10A2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  OR10A2 MUTATED        0      5      1
  OR10A2 WILD-TYPE     13     24     13
D9V1, multiclass
        clus
vv       OR10A2 MUTATED OR10A2 WILD-TYPE
  CLUS_1              0               13
  CLUS_2              5               24
  CLUS_3              1               13
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  OR10A2 MUTATED        0      5      1
  OR10A2 WILD-TYPE     18     19     13
D9V2, multiclass
        clus
vv       OR10A2 MUTATED OR10A2 WILD-TYPE
  CLUS_1              0               18
  CLUS_2              5               19
  CLUS_3              1               13
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR10A2 MUTATED        0      1      3      1
  OR10A2 WILD-TYPE     18     11      6      7
D9V3, multiclass
        clus
vv       OR10A2 MUTATED OR10A2 WILD-TYPE
  CLUS_1              0               18
  CLUS_2              1               11
  CLUS_3              3                6
  CLUS_4              1                7
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  OR10A2 MUTATED        0      0      5
  OR10A2 WILD-TYPE      4     18     20
D9V4, multiclass
        clus
vv       OR10A2 MUTATED OR10A2 WILD-TYPE
  CLUS_1              0                4
  CLUS_2              0               18
  CLUS_3              5               20
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  OR10A2 MUTATED        1      1      4
  OR10A2 WILD-TYPE     24     10     10
D9V5, multiclass
        clus
vv       OR10A2 MUTATED OR10A2 WILD-TYPE
  CLUS_1              1               24
  CLUS_2              1               10
  CLUS_3              4               10
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  OR10A2 MUTATED        3      2      1
  OR10A2 WILD-TYPE      5     17     22
D9V6, multiclass
        clus
vv       OR10A2 MUTATED OR10A2 WILD-TYPE
  CLUS_1              3                5
  CLUS_2              2               17
  CLUS_3              1               22
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  OR10A2 MUTATED        1      1      4
  OR10A2 WILD-TYPE     20      8     16
D9V7, multiclass
        clus
vv       OR10A2 MUTATED OR10A2 WILD-TYPE
  CLUS_1              1               20
  CLUS_2              1                8
  CLUS_3              4               16
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  OR10A2 MUTATED        3      1      2
  OR10A2 WILD-TYPE      6     21     17
D9V8, multiclass
        clus
vv       OR10A2 MUTATED OR10A2 WILD-TYPE
  CLUS_1              3                6
  CLUS_2              1               21
  CLUS_3              2               17

Clustering(10) Variable = OR10A7 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  OR10A7 MUTATED        1      6      2
  OR10A7 WILD-TYPE     12     23     12
D10V1, multiclass
        clus
vv       OR10A7 MUTATED OR10A7 WILD-TYPE
  CLUS_1              1               12
  CLUS_2              6               23
  CLUS_3              2               12
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  OR10A7 MUTATED        1      5      3
  OR10A7 WILD-TYPE     17     19     11
D10V2, multiclass
        clus
vv       OR10A7 MUTATED OR10A7 WILD-TYPE
  CLUS_1              1               17
  CLUS_2              5               19
  CLUS_3              3               11
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR10A7 MUTATED        2      2      4      0
  OR10A7 WILD-TYPE     16     10      5      8
D10V3, multiclass
        clus
vv       OR10A7 MUTATED OR10A7 WILD-TYPE
  CLUS_1              2               16
  CLUS_2              2               10
  CLUS_3              4                5
  CLUS_4              0                8
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  OR10A7 MUTATED        0      2      6
  OR10A7 WILD-TYPE      4     16     19
D10V4, multiclass
        clus
vv       OR10A7 MUTATED OR10A7 WILD-TYPE
  CLUS_1              0                4
  CLUS_2              2               16
  CLUS_3              6               19
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  OR10A7 MUTATED        3      2      4
  OR10A7 WILD-TYPE     22      9     10
D10V5, multiclass
        clus
vv       OR10A7 MUTATED OR10A7 WILD-TYPE
  CLUS_1              3               22
  CLUS_2              2                9
  CLUS_3              4               10
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  OR10A7 MUTATED        2      3      4
  OR10A7 WILD-TYPE      6     16     19
D10V6, multiclass
        clus
vv       OR10A7 MUTATED OR10A7 WILD-TYPE
  CLUS_1              2                6
  CLUS_2              3               16
  CLUS_3              4               19
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  OR10A7 MUTATED        3      1      5
  OR10A7 WILD-TYPE     18      8     15
D10V7, multiclass
        clus
vv       OR10A7 MUTATED OR10A7 WILD-TYPE
  CLUS_1              3               18
  CLUS_2              1                8
  CLUS_3              5               15
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  OR10A7 MUTATED        3      3      3
  OR10A7 WILD-TYPE      6     19     16
D10V8, multiclass
        clus
vv       OR10A7 MUTATED OR10A7 WILD-TYPE
  CLUS_1              3                6
  CLUS_2              3               19
  CLUS_3              3               16

Clustering(11) Variable = POP5 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  POP5 MUTATED        0      5      0
  POP5 WILD-TYPE     13     24     14
D11V1, multiclass
        clus
vv       POP5 MUTATED POP5 WILD-TYPE
  CLUS_1            0             13
  CLUS_2            5             24
  CLUS_3            0             14
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  POP5 MUTATED        0      4      1
  POP5 WILD-TYPE     18     20     13
D11V2, multiclass
        clus
vv       POP5 MUTATED POP5 WILD-TYPE
  CLUS_1            0             18
  CLUS_2            4             20
  CLUS_3            1             13
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  POP5 MUTATED        0      2      3      0
  POP5 WILD-TYPE     18     10      6      8
D11V3, multiclass
        clus
vv       POP5 MUTATED POP5 WILD-TYPE
  CLUS_1            0             18
  CLUS_2            2             10
  CLUS_3            3              6
  CLUS_4            0              8
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  POP5 MUTATED        0      0      5
  POP5 WILD-TYPE      4     18     20
D11V4, multiclass
        clus
vv       POP5 MUTATED POP5 WILD-TYPE
  CLUS_1            0              4
  CLUS_2            0             18
  CLUS_3            5             20
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  POP5 MUTATED        0      2      3
  POP5 WILD-TYPE     25      9     11
D11V5, multiclass
        clus
vv       POP5 MUTATED POP5 WILD-TYPE
  CLUS_1            0             25
  CLUS_2            2              9
  CLUS_3            3             11
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  POP5 MUTATED        1      3      1
  POP5 WILD-TYPE      7     16     22
D11V6, multiclass
        clus
vv       POP5 MUTATED POP5 WILD-TYPE
  CLUS_1            1              7
  CLUS_2            3             16
  CLUS_3            1             22
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  POP5 MUTATED        0      1      4
  POP5 WILD-TYPE     21      8     16
D11V7, multiclass
        clus
vv       POP5 MUTATED POP5 WILD-TYPE
  CLUS_1            0             21
  CLUS_2            1              8
  CLUS_3            4             16
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  POP5 MUTATED        2      0      3
  POP5 WILD-TYPE      7     22     16
D11V8, multiclass
        clus
vv       POP5 MUTATED POP5 WILD-TYPE
  CLUS_1            2              7
  CLUS_2            0             22
  CLUS_3            3             16

Clustering(12) Variable = SRP14 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SRP14 MUTATED        1      4      2
  SRP14 WILD-TYPE     12     25     12
D12V1, multiclass
        clus
vv       SRP14 MUTATED SRP14 WILD-TYPE
  CLUS_1             1              12
  CLUS_2             4              25
  CLUS_3             2              12
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SRP14 MUTATED        2      3      2
  SRP14 WILD-TYPE     16     21     12
D12V2, multiclass
        clus
vv       SRP14 MUTATED SRP14 WILD-TYPE
  CLUS_1             2              16
  CLUS_2             3              21
  CLUS_3             2              12
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SRP14 MUTATED        3      1      1      1
  SRP14 WILD-TYPE     15     11      8      7
D12V3, multiclass
        clus
vv       SRP14 MUTATED SRP14 WILD-TYPE
  CLUS_1             3              15
  CLUS_2             1              11
  CLUS_3             1               8
  CLUS_4             1               7
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SRP14 MUTATED        1      3      2
  SRP14 WILD-TYPE      3     15     23
D12V4, multiclass
        clus
vv       SRP14 MUTATED SRP14 WILD-TYPE
  CLUS_1             1               3
  CLUS_2             3              15
  CLUS_3             2              23
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SRP14 MUTATED        4      2      1
  SRP14 WILD-TYPE     21      9     13
D12V5, multiclass
        clus
vv       SRP14 MUTATED SRP14 WILD-TYPE
  CLUS_1             4              21
  CLUS_2             2               9
  CLUS_3             1              13
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SRP14 MUTATED        0      4      3
  SRP14 WILD-TYPE      8     15     20
D12V6, multiclass
        clus
vv       SRP14 MUTATED SRP14 WILD-TYPE
  CLUS_1             0               8
  CLUS_2             4              15
  CLUS_3             3              20
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SRP14 MUTATED        2      3      2
  SRP14 WILD-TYPE     19      6     18
D12V7, multiclass
        clus
vv       SRP14 MUTATED SRP14 WILD-TYPE
  CLUS_1             2              19
  CLUS_2             3               6
  CLUS_3             2              18
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SRP14 MUTATED        0      3      4
  SRP14 WILD-TYPE      9     19     15
D12V8, multiclass
        clus
vv       SRP14 MUTATED SRP14 WILD-TYPE
  CLUS_1             0               9
  CLUS_2             3              19
  CLUS_3             4              15

Clustering(13) Variable = WRN MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  WRN MUTATED        2      3      0
  WRN WILD-TYPE     11     26     14
D13V1, multiclass
        clus
vv       WRN MUTATED WRN WILD-TYPE
  CLUS_1           2            11
  CLUS_2           3            26
  CLUS_3           0            14
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  WRN MUTATED        1      3      1
  WRN WILD-TYPE     17     21     13
D13V2, multiclass
        clus
vv       WRN MUTATED WRN WILD-TYPE
  CLUS_1           1            17
  CLUS_2           3            21
  CLUS_3           1            13
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WRN MUTATED        2      2      1      0
  WRN WILD-TYPE     16     10      8      8
D13V3, multiclass
        clus
vv       WRN MUTATED WRN WILD-TYPE
  CLUS_1           2            16
  CLUS_2           2            10
  CLUS_3           1             8
  CLUS_4           0             8
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  WRN MUTATED        0      1      4
  WRN WILD-TYPE      4     17     21
D13V4, multiclass
        clus
vv       WRN MUTATED WRN WILD-TYPE
  CLUS_1           0             4
  CLUS_2           1            17
  CLUS_3           4            21
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  WRN MUTATED        2      2      1
  WRN WILD-TYPE     23      9     13
D13V5, multiclass
        clus
vv       WRN MUTATED WRN WILD-TYPE
  CLUS_1           2            23
  CLUS_2           2             9
  CLUS_3           1            13
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  WRN MUTATED        1      2      2
  WRN WILD-TYPE      7     17     21
D13V6, multiclass
        clus
vv       WRN MUTATED WRN WILD-TYPE
  CLUS_1           1             7
  CLUS_2           2            17
  CLUS_3           2            21
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  WRN MUTATED        2      1      2
  WRN WILD-TYPE     19      8     18
D13V7, multiclass
        clus
vv       WRN MUTATED WRN WILD-TYPE
  CLUS_1           2            19
  CLUS_2           1             8
  CLUS_3           2            18
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  WRN MUTATED        1      2      2
  WRN WILD-TYPE      8     20     17
D13V8, multiclass
        clus
vv       WRN MUTATED WRN WILD-TYPE
  CLUS_1           1             8
  CLUS_2           2            20
  CLUS_3           2            17

Clustering(14) Variable = TMEM40 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TMEM40 MUTATED        1      4      3
  TMEM40 WILD-TYPE     12     25     11
D14V1, multiclass
        clus
vv       TMEM40 MUTATED TMEM40 WILD-TYPE
  CLUS_1              1               12
  CLUS_2              4               25
  CLUS_3              3               11
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TMEM40 MUTATED        1      5      3
  TMEM40 WILD-TYPE     17     19     11
D14V2, multiclass
        clus
vv       TMEM40 MUTATED TMEM40 WILD-TYPE
  CLUS_1              1               17
  CLUS_2              5               19
  CLUS_3              3               11
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM40 MUTATED        3      1      3      1
  TMEM40 WILD-TYPE     15     11      6      7
D14V3, multiclass
        clus
vv       TMEM40 MUTATED TMEM40 WILD-TYPE
  CLUS_1              3               15
  CLUS_2              1               11
  CLUS_3              3                6
  CLUS_4              1                7
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TMEM40 MUTATED        0      3      5
  TMEM40 WILD-TYPE      4     15     20
D14V4, multiclass
        clus
vv       TMEM40 MUTATED TMEM40 WILD-TYPE
  CLUS_1              0                4
  CLUS_2              3               15
  CLUS_3              5               20
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TMEM40 MUTATED        4      1      4
  TMEM40 WILD-TYPE     21     10     10
D14V5, multiclass
        clus
vv       TMEM40 MUTATED TMEM40 WILD-TYPE
  CLUS_1              4               21
  CLUS_2              1               10
  CLUS_3              4               10
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TMEM40 MUTATED        2      3      4
  TMEM40 WILD-TYPE      6     16     19
D14V6, multiclass
        clus
vv       TMEM40 MUTATED TMEM40 WILD-TYPE
  CLUS_1              2                6
  CLUS_2              3               16
  CLUS_3              4               19
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TMEM40 MUTATED        4      0      5
  TMEM40 WILD-TYPE     17      9     15
D14V7, multiclass
        clus
vv       TMEM40 MUTATED TMEM40 WILD-TYPE
  CLUS_1              4               17
  CLUS_2              0                9
  CLUS_3              5               15
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TMEM40 MUTATED        2      4      3
  TMEM40 WILD-TYPE      7     18     16
D14V8, multiclass
        clus
vv       TMEM40 MUTATED TMEM40 WILD-TYPE
  CLUS_1              2                7
  CLUS_2              4               18
  CLUS_3              3               16

Clustering(15) Variable = KRAS MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  KRAS MUTATED       11     13      9
  KRAS WILD-TYPE      2     16      5
D15V1, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1           11              2
  CLUS_2           13             16
  CLUS_3            9              5
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  KRAS MUTATED       13      7     12
  KRAS WILD-TYPE      5     17      2
D15V2, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1           13              5
  CLUS_2            7             17
  CLUS_3           12              2
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRAS MUTATED       14      4      3      4
  KRAS WILD-TYPE      4      8      6      4
D15V3, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1           14              4
  CLUS_2            4              8
  CLUS_3            3              6
  CLUS_4            4              4
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  KRAS MUTATED        2     14      9
  KRAS WILD-TYPE      2      4     16
D15V4, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1            2              2
  CLUS_2           14              4
  CLUS_3            9             16
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  KRAS MUTATED       17      4      5
  KRAS WILD-TYPE      8      7      9
D15V5, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1           17              8
  CLUS_2            4              7
  CLUS_3            5              9
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  KRAS MUTATED        2      9     15
  KRAS WILD-TYPE      6     10      8
D15V6, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1            2              6
  CLUS_2            9             10
  CLUS_3           15              8
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  KRAS MUTATED       14      4      8
  KRAS WILD-TYPE      7      5     12
D15V7, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1           14              7
  CLUS_2            4              5
  CLUS_3            8             12
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  KRAS MUTATED        3     14      9
  KRAS WILD-TYPE      6      8     10
D15V8, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1            3              6
  CLUS_2           14              8
  CLUS_3            9             10

Clustering(16) Variable = TP53 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TP53 MUTATED       10     15     12
  TP53 WILD-TYPE      3     14      2
D16V1, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           10              3
  CLUS_2           15             14
  CLUS_3           12              2
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TP53 MUTATED       16     10     10
  TP53 WILD-TYPE      2     14      4
D16V2, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           16              2
  CLUS_2           10             14
  CLUS_3           10              4
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TP53 MUTATED       15      8      5      3
  TP53 WILD-TYPE      3      4      4      5
D16V3, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           15              3
  CLUS_2            8              4
  CLUS_3            5              4
  CLUS_4            3              5
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TP53 MUTATED        2     15     14
  TP53 WILD-TYPE      2      3     11
D16V4, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1            2              2
  CLUS_2           15              3
  CLUS_3           14             11
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TP53 MUTATED       18      7      7
  TP53 WILD-TYPE      7      4      7
D16V5, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           18              7
  CLUS_2            7              4
  CLUS_3            7              7
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TP53 MUTATED        4     11     17
  TP53 WILD-TYPE      4      8      6
D16V6, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1            4              4
  CLUS_2           11              8
  CLUS_3           17              6
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TP53 MUTATED       16      5     11
  TP53 WILD-TYPE      5      4      9
D16V7, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           16              5
  CLUS_2            5              4
  CLUS_3           11              9
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TP53 MUTATED        5     16     11
  TP53 WILD-TYPE      4      6      8
D16V8, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1            5              4
  CLUS_2           16              6
  CLUS_3           11              8

Clustering(17) Variable = QRICH1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  QRICH1 MUTATED        0      6      0
  QRICH1 WILD-TYPE     13     23     14
D17V1, multiclass
        clus
vv       QRICH1 MUTATED QRICH1 WILD-TYPE
  CLUS_1              0               13
  CLUS_2              6               23
  CLUS_3              0               14
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  QRICH1 MUTATED        0      4      3
  QRICH1 WILD-TYPE     18     20     11
D17V2, multiclass
        clus
vv       QRICH1 MUTATED QRICH1 WILD-TYPE
  CLUS_1              0               18
  CLUS_2              4               20
  CLUS_3              3               11
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  QRICH1 MUTATED        1      3      1      2
  QRICH1 WILD-TYPE     17      9      8      6
D17V3, multiclass
        clus
vv       QRICH1 MUTATED QRICH1 WILD-TYPE
  CLUS_1              1               17
  CLUS_2              3                9
  CLUS_3              1                8
  CLUS_4              2                6
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  QRICH1 MUTATED        2      1      4
  QRICH1 WILD-TYPE      2     17     21
D17V4, multiclass
        clus
vv       QRICH1 MUTATED QRICH1 WILD-TYPE
  CLUS_1              2                2
  CLUS_2              1               17
  CLUS_3              4               21
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  QRICH1 MUTATED        3      3      1
  QRICH1 WILD-TYPE     22      8     13
D17V5, multiclass
        clus
vv       QRICH1 MUTATED QRICH1 WILD-TYPE
  CLUS_1              3               22
  CLUS_2              3                8
  CLUS_3              1               13
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  QRICH1 MUTATED        1      5      1
  QRICH1 WILD-TYPE      7     14     22
D17V6, multiclass
        clus
vv       QRICH1 MUTATED QRICH1 WILD-TYPE
  CLUS_1              1                7
  CLUS_2              5               14
  CLUS_3              1               22
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  QRICH1 MUTATED        0      4      3
  QRICH1 WILD-TYPE     21      5     17
D17V7, multiclass
        clus
vv       QRICH1 MUTATED QRICH1 WILD-TYPE
  CLUS_1              0               21
  CLUS_2              4                5
  CLUS_3              3               17
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  QRICH1 MUTATED        1      1      5
  QRICH1 WILD-TYPE      8     21     14
D17V8, multiclass
        clus
vv       QRICH1 MUTATED QRICH1 WILD-TYPE
  CLUS_1              1                8
  CLUS_2              1               21
  CLUS_3              5               14

Clustering(18) Variable = ST6GALNAC5 MUTATION ANALYSIS
                      vv
clus                   CLUS_1 CLUS_2 CLUS_3
  ST6GALNAC5 MUTATED        1      4      1
  ST6GALNAC5 WILD-TYPE     12     25     13
D18V1, multiclass
        clus
vv       ST6GALNAC5 MUTATED ST6GALNAC5 WILD-TYPE
  CLUS_1                  1                   12
  CLUS_2                  4                   25
  CLUS_3                  1                   13
                      vv
clus                   CLUS_1 CLUS_2 CLUS_3
  ST6GALNAC5 MUTATED        3      3      0
  ST6GALNAC5 WILD-TYPE     15     21     14
D18V2, multiclass
        clus
vv       ST6GALNAC5 MUTATED ST6GALNAC5 WILD-TYPE
  CLUS_1                  3                   15
  CLUS_2                  3                   21
  CLUS_3                  0                   14
                      vv
clus                   CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ST6GALNAC5 MUTATED        3      1      2      0
  ST6GALNAC5 WILD-TYPE     15     11      7      8
D18V3, multiclass
        clus
vv       ST6GALNAC5 MUTATED ST6GALNAC5 WILD-TYPE
  CLUS_1                  3                   15
  CLUS_2                  1                   11
  CLUS_3                  2                    7
  CLUS_4                  0                    8
                      vv
clus                   CLUS_1 CLUS_2 CLUS_3
  ST6GALNAC5 MUTATED        0      3      3
  ST6GALNAC5 WILD-TYPE      4     15     22
D18V4, multiclass
        clus
vv       ST6GALNAC5 MUTATED ST6GALNAC5 WILD-TYPE
  CLUS_1                  0                    4
  CLUS_2                  3                   15
  CLUS_3                  3                   22
                      vv
clus                   CLUS_1 CLUS_2 CLUS_3
  ST6GALNAC5 MUTATED        3      1      2
  ST6GALNAC5 WILD-TYPE     22     10     12
D18V5, multiclass
        clus
vv       ST6GALNAC5 MUTATED ST6GALNAC5 WILD-TYPE
  CLUS_1                  3                   22
  CLUS_2                  1                   10
  CLUS_3                  2                   12
                      vv
clus                   CLUS_1 CLUS_2 CLUS_3
  ST6GALNAC5 MUTATED        1      2      3
  ST6GALNAC5 WILD-TYPE      7     17     20
D18V6, multiclass
        clus
vv       ST6GALNAC5 MUTATED ST6GALNAC5 WILD-TYPE
  CLUS_1                  1                    7
  CLUS_2                  2                   17
  CLUS_3                  3                   20
                      vv
clus                   CLUS_1 CLUS_2 CLUS_3
  ST6GALNAC5 MUTATED        3      0      3
  ST6GALNAC5 WILD-TYPE     18      9     17
D18V7, multiclass
        clus
vv       ST6GALNAC5 MUTATED ST6GALNAC5 WILD-TYPE
  CLUS_1                  3                   18
  CLUS_2                  0                    9
  CLUS_3                  3                   17
                      vv
clus                   CLUS_1 CLUS_2 CLUS_3
  ST6GALNAC5 MUTATED        1      3      2
  ST6GALNAC5 WILD-TYPE      8     19     17
D18V8, multiclass
        clus
vv       ST6GALNAC5 MUTATED ST6GALNAC5 WILD-TYPE
  CLUS_1                  1                    8
  CLUS_2                  3                   19
  CLUS_3                  2                   17

Clustering(19) Variable = TNFSF9 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TNFSF9 MUTATED        1      5      0
  TNFSF9 WILD-TYPE     12     24     14
D19V1, multiclass
        clus
vv       TNFSF9 MUTATED TNFSF9 WILD-TYPE
  CLUS_1              1               12
  CLUS_2              5               24
  CLUS_3              0               14
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TNFSF9 MUTATED        1      3      2
  TNFSF9 WILD-TYPE     17     21     12
D19V2, multiclass
        clus
vv       TNFSF9 MUTATED TNFSF9 WILD-TYPE
  CLUS_1              1               17
  CLUS_2              3               21
  CLUS_3              2               12
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNFSF9 MUTATED        2      1      0      3
  TNFSF9 WILD-TYPE     16     11      9      5
D19V3, multiclass
        clus
vv       TNFSF9 MUTATED TNFSF9 WILD-TYPE
  CLUS_1              2               16
  CLUS_2              1               11
  CLUS_3              0                9
  CLUS_4              3                5
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TNFSF9 MUTATED        2      2      2
  TNFSF9 WILD-TYPE      2     16     23
D19V4, multiclass
        clus
vv       TNFSF9 MUTATED TNFSF9 WILD-TYPE
  CLUS_1              2                2
  CLUS_2              2               16
  CLUS_3              2               23
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TNFSF9 MUTATED        4      0      2
  TNFSF9 WILD-TYPE     21     11     12
D19V5, multiclass
        clus
vv       TNFSF9 MUTATED TNFSF9 WILD-TYPE
  CLUS_1              4               21
  CLUS_2              0               11
  CLUS_3              2               12
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TNFSF9 MUTATED        1      3      2
  TNFSF9 WILD-TYPE      7     16     21
D19V6, multiclass
        clus
vv       TNFSF9 MUTATED TNFSF9 WILD-TYPE
  CLUS_1              1                7
  CLUS_2              3               16
  CLUS_3              2               21
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TNFSF9 MUTATED        1      3      2
  TNFSF9 WILD-TYPE     20      6     18
D19V7, multiclass
        clus
vv       TNFSF9 MUTATED TNFSF9 WILD-TYPE
  CLUS_1              1               20
  CLUS_2              3                6
  CLUS_3              2               18
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TNFSF9 MUTATED        1      2      3
  TNFSF9 WILD-TYPE      8     20     16
D19V8, multiclass
        clus
vv       TNFSF9 MUTATED TNFSF9 WILD-TYPE
  CLUS_1              1                8
  CLUS_2              2               20
  CLUS_3              3               16

Clustering(20) Variable = CDKN2A MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CDKN2A MUTATED        3      5      5
  CDKN2A WILD-TYPE     10     24      9
D20V1, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1              3               10
  CLUS_2              5               24
  CLUS_3              5                9
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CDKN2A MUTATED        4      3      6
  CDKN2A WILD-TYPE     14     21      8
D20V2, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1              4               14
  CLUS_2              3               21
  CLUS_3              6                8
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDKN2A MUTATED        5      4      1      1
  CDKN2A WILD-TYPE     13      8      8      7
D20V3, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1              5               13
  CLUS_2              4                8
  CLUS_3              1                8
  CLUS_4              1                7
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CDKN2A MUTATED        1      5      5
  CDKN2A WILD-TYPE      3     13     20
D20V4, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1              1                3
  CLUS_2              5               13
  CLUS_3              5               20
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CDKN2A MUTATED        7      4      1
  CDKN2A WILD-TYPE     18      7     13
D20V5, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1              7               18
  CLUS_2              4                7
  CLUS_3              1               13
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CDKN2A MUTATED        1      5      6
  CDKN2A WILD-TYPE      7     14     17
D20V6, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1              1                7
  CLUS_2              5               14
  CLUS_3              6               17
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CDKN2A MUTATED        6      2      4
  CDKN2A WILD-TYPE     15      7     16
D20V7, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1              6               15
  CLUS_2              2                7
  CLUS_3              4               16
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CDKN2A MUTATED        1      6      5
  CDKN2A WILD-TYPE      8     16     14
D20V8, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1              1                8
  CLUS_2              6               16
  CLUS_3              5               14

Clustering(21) Variable = SEH1L MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SEH1L MUTATED        1      6      1
  SEH1L WILD-TYPE     12     23     13
D21V1, multiclass
        clus
vv       SEH1L MUTATED SEH1L WILD-TYPE
  CLUS_1             1              12
  CLUS_2             6              23
  CLUS_3             1              13
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SEH1L MUTATED        1      5      2
  SEH1L WILD-TYPE     17     19     12
D21V2, multiclass
        clus
vv       SEH1L MUTATED SEH1L WILD-TYPE
  CLUS_1             1              17
  CLUS_2             5              19
  CLUS_3             2              12
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SEH1L MUTATED        2      2      3      1
  SEH1L WILD-TYPE     16     10      6      7
D21V3, multiclass
        clus
vv       SEH1L MUTATED SEH1L WILD-TYPE
  CLUS_1             2              16
  CLUS_2             2              10
  CLUS_3             3               6
  CLUS_4             1               7
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SEH1L MUTATED        1      2      5
  SEH1L WILD-TYPE      3     16     20
D21V4, multiclass
        clus
vv       SEH1L MUTATED SEH1L WILD-TYPE
  CLUS_1             1               3
  CLUS_2             2              16
  CLUS_3             5              20
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SEH1L MUTATED        3      2      3
  SEH1L WILD-TYPE     22      9     11
D21V5, multiclass
        clus
vv       SEH1L MUTATED SEH1L WILD-TYPE
  CLUS_1             3              22
  CLUS_2             2               9
  CLUS_3             3              11
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SEH1L MUTATED        2      5      1
  SEH1L WILD-TYPE      6     14     22
D21V6, multiclass
        clus
vv       SEH1L MUTATED SEH1L WILD-TYPE
  CLUS_1             2               6
  CLUS_2             5              14
  CLUS_3             1              22
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SEH1L MUTATED        1      4      3
  SEH1L WILD-TYPE     20      5     17
D21V7, multiclass
        clus
vv       SEH1L MUTATED SEH1L WILD-TYPE
  CLUS_1             1              20
  CLUS_2             4               5
  CLUS_3             3              17
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SEH1L MUTATED        2      1      5
  SEH1L WILD-TYPE      7     21     14
D21V8, multiclass
        clus
vv       SEH1L MUTATED SEH1L WILD-TYPE
  CLUS_1             2               7
  CLUS_2             1              21
  CLUS_3             5              14

Clustering(22) Variable = SCD MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  SCD MUTATED        1      6      1
  SCD WILD-TYPE     12     23     13
D22V1, multiclass
        clus
vv       SCD MUTATED SCD WILD-TYPE
  CLUS_1           1            12
  CLUS_2           6            23
  CLUS_3           1            13
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  SCD MUTATED        1      4      3
  SCD WILD-TYPE     17     20     11
D22V2, multiclass
        clus
vv       SCD MUTATED SCD WILD-TYPE
  CLUS_1           1            17
  CLUS_2           4            20
  CLUS_3           3            11
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SCD MUTATED        3      1      4      0
  SCD WILD-TYPE     15     11      5      8
D22V3, multiclass
        clus
vv       SCD MUTATED SCD WILD-TYPE
  CLUS_1           3            15
  CLUS_2           1            11
  CLUS_3           4             5
  CLUS_4           0             8
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  SCD MUTATED        0      3      5
  SCD WILD-TYPE      4     15     20
D22V4, multiclass
        clus
vv       SCD MUTATED SCD WILD-TYPE
  CLUS_1           0             4
  CLUS_2           3            15
  CLUS_3           5            20
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  SCD MUTATED        3      1      4
  SCD WILD-TYPE     22     10     10
D22V5, multiclass
        clus
vv       SCD MUTATED SCD WILD-TYPE
  CLUS_1           3            22
  CLUS_2           1            10
  CLUS_3           4            10
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  SCD MUTATED        2      3      3
  SCD WILD-TYPE      6     16     20
D22V6, multiclass
        clus
vv       SCD MUTATED SCD WILD-TYPE
  CLUS_1           2             6
  CLUS_2           3            16
  CLUS_3           3            20
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  SCD MUTATED        2      2      4
  SCD WILD-TYPE     19      7     16
D22V7, multiclass
        clus
vv       SCD MUTATED SCD WILD-TYPE
  CLUS_1           2            19
  CLUS_2           2             7
  CLUS_3           4            16
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  SCD MUTATED        3      2      3
  SCD WILD-TYPE      6     20     16
D22V8, multiclass
        clus
vv       SCD MUTATED SCD WILD-TYPE
  CLUS_1           3             6
  CLUS_2           2            20
  CLUS_3           3            16

Clustering(23) Variable = TMC4 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TMC4 MUTATED        2      4      3
  TMC4 WILD-TYPE     11     25     11
D23V1, multiclass
        clus
vv       TMC4 MUTATED TMC4 WILD-TYPE
  CLUS_1            2             11
  CLUS_2            4             25
  CLUS_3            3             11
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TMC4 MUTATED        5      2      2
  TMC4 WILD-TYPE     13     22     12
D23V2, multiclass
        clus
vv       TMC4 MUTATED TMC4 WILD-TYPE
  CLUS_1            5             13
  CLUS_2            2             22
  CLUS_3            2             12
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMC4 MUTATED        5      2      0      1
  TMC4 WILD-TYPE     13     10      9      7
D23V3, multiclass
        clus
vv       TMC4 MUTATED TMC4 WILD-TYPE
  CLUS_1            5             13
  CLUS_2            2             10
  CLUS_3            0              9
  CLUS_4            1              7
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TMC4 MUTATED        1      5      2
  TMC4 WILD-TYPE      3     13     23
D23V4, multiclass
        clus
vv       TMC4 MUTATED TMC4 WILD-TYPE
  CLUS_1            1              3
  CLUS_2            5             13
  CLUS_3            2             23
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TMC4 MUTATED        6      2      0
  TMC4 WILD-TYPE     19      9     14
D23V5, multiclass
        clus
vv       TMC4 MUTATED TMC4 WILD-TYPE
  CLUS_1            6             19
  CLUS_2            2              9
  CLUS_3            0             14
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TMC4 MUTATED        0      4      4
  TMC4 WILD-TYPE      8     15     19
D23V6, multiclass
        clus
vv       TMC4 MUTATED TMC4 WILD-TYPE
  CLUS_1            0              8
  CLUS_2            4             15
  CLUS_3            4             19
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TMC4 MUTATED        4      2      2
  TMC4 WILD-TYPE     17      7     18
D23V7, multiclass
        clus
vv       TMC4 MUTATED TMC4 WILD-TYPE
  CLUS_1            4             17
  CLUS_2            2              7
  CLUS_3            2             18
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TMC4 MUTATED        0      4      4
  TMC4 WILD-TYPE      9     18     15
D23V8, multiclass
        clus
vv       TMC4 MUTATED TMC4 WILD-TYPE
  CLUS_1            0              9
  CLUS_2            4             18
  CLUS_3            4             15

Clustering(24) Variable = MED15 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MED15 MUTATED        2      5      2
  MED15 WILD-TYPE     11     24     12
D24V1, multiclass
        clus
vv       MED15 MUTATED MED15 WILD-TYPE
  CLUS_1             2              11
  CLUS_2             5              24
  CLUS_3             2              12
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MED15 MUTATED        2      4      3
  MED15 WILD-TYPE     16     20     11
D24V2, multiclass
        clus
vv       MED15 MUTATED MED15 WILD-TYPE
  CLUS_1             2              16
  CLUS_2             4              20
  CLUS_3             3              11
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MED15 MUTATED        5      1      2      1
  MED15 WILD-TYPE     13     11      7      7
D24V3, multiclass
        clus
vv       MED15 MUTATED MED15 WILD-TYPE
  CLUS_1             5              13
  CLUS_2             1              11
  CLUS_3             2               7
  CLUS_4             1               7
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MED15 MUTATED        1      5      3
  MED15 WILD-TYPE      3     13     22
D24V4, multiclass
        clus
vv       MED15 MUTATED MED15 WILD-TYPE
  CLUS_1             1               3
  CLUS_2             5              13
  CLUS_3             3              22
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MED15 MUTATED        6      1      2
  MED15 WILD-TYPE     19     10     12
D24V5, multiclass
        clus
vv       MED15 MUTATED MED15 WILD-TYPE
  CLUS_1             6              19
  CLUS_2             1              10
  CLUS_3             2              12
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MED15 MUTATED        1      4      4
  MED15 WILD-TYPE      7     15     19
D24V6, multiclass
        clus
vv       MED15 MUTATED MED15 WILD-TYPE
  CLUS_1             1               7
  CLUS_2             4              15
  CLUS_3             4              19
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MED15 MUTATED        3      3      3
  MED15 WILD-TYPE     18      6     17
D24V7, multiclass
        clus
vv       MED15 MUTATED MED15 WILD-TYPE
  CLUS_1             3              18
  CLUS_2             3               6
  CLUS_3             3              17
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MED15 MUTATED        1      4      4
  MED15 WILD-TYPE      8     18     15
D24V8, multiclass
        clus
vv       MED15 MUTATED MED15 WILD-TYPE
  CLUS_1             1               8
  CLUS_2             4              18
  CLUS_3             4              15

Clustering(25) Variable = TNFRSF9 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TNFRSF9 MUTATED        1      4      1
  TNFRSF9 WILD-TYPE     12     25     13
D25V1, multiclass
        clus
vv       TNFRSF9 MUTATED TNFRSF9 WILD-TYPE
  CLUS_1               1                12
  CLUS_2               4                25
  CLUS_3               1                13
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TNFRSF9 MUTATED        1      4      1
  TNFRSF9 WILD-TYPE     17     20     13
D25V2, multiclass
        clus
vv       TNFRSF9 MUTATED TNFRSF9 WILD-TYPE
  CLUS_1               1                17
  CLUS_2               4                20
  CLUS_3               1                13
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNFRSF9 MUTATED        1      1      2      1
  TNFRSF9 WILD-TYPE     17     11      7      7
D25V3, multiclass
        clus
vv       TNFRSF9 MUTATED TNFRSF9 WILD-TYPE
  CLUS_1               1                17
  CLUS_2               1                11
  CLUS_3               2                 7
  CLUS_4               1                 7
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TNFRSF9 MUTATED        0      1      4
  TNFRSF9 WILD-TYPE      4     17     21
D25V4, multiclass
        clus
vv       TNFRSF9 MUTATED TNFRSF9 WILD-TYPE
  CLUS_1               0                 4
  CLUS_2               1                17
  CLUS_3               4                21
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TNFRSF9 MUTATED        2      1      3
  TNFRSF9 WILD-TYPE     23     10     11
D25V5, multiclass
        clus
vv       TNFRSF9 MUTATED TNFRSF9 WILD-TYPE
  CLUS_1               2                23
  CLUS_2               1                10
  CLUS_3               3                11
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TNFRSF9 MUTATED        2      2      2
  TNFRSF9 WILD-TYPE      6     17     21
D25V6, multiclass
        clus
vv       TNFRSF9 MUTATED TNFRSF9 WILD-TYPE
  CLUS_1               2                 6
  CLUS_2               2                17
  CLUS_3               2                21
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TNFRSF9 MUTATED        2      1      3
  TNFRSF9 WILD-TYPE     19      8     17
D25V7, multiclass
        clus
vv       TNFRSF9 MUTATED TNFRSF9 WILD-TYPE
  CLUS_1               2                19
  CLUS_2               1                 8
  CLUS_3               3                17
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TNFRSF9 MUTATED        2      2      2
  TNFRSF9 WILD-TYPE      7     20     17
D25V8, multiclass
        clus
vv       TNFRSF9 MUTATED TNFRSF9 WILD-TYPE
  CLUS_1               2                 7
  CLUS_2               2                20
  CLUS_3               2                17

Clustering(26) Variable = BRDT MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BRDT MUTATED        1      6      1
  BRDT WILD-TYPE     12     23     13
D26V1, multiclass
        clus
vv       BRDT MUTATED BRDT WILD-TYPE
  CLUS_1            1             12
  CLUS_2            6             23
  CLUS_3            1             13
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BRDT MUTATED        1      5      2
  BRDT WILD-TYPE     17     19     12
D26V2, multiclass
        clus
vv       BRDT MUTATED BRDT WILD-TYPE
  CLUS_1            1             17
  CLUS_2            5             19
  CLUS_3            2             12
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BRDT MUTATED        2      1      3      1
  BRDT WILD-TYPE     16     11      6      7
D26V3, multiclass
        clus
vv       BRDT MUTATED BRDT WILD-TYPE
  CLUS_1            2             16
  CLUS_2            1             11
  CLUS_3            3              6
  CLUS_4            1              7
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BRDT MUTATED        0      2      5
  BRDT WILD-TYPE      4     16     20
D26V4, multiclass
        clus
vv       BRDT MUTATED BRDT WILD-TYPE
  CLUS_1            0              4
  CLUS_2            2             16
  CLUS_3            5             20
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BRDT MUTATED        3      0      5
  BRDT WILD-TYPE     22     11      9
D26V5, multiclass
        clus
vv       BRDT MUTATED BRDT WILD-TYPE
  CLUS_1            3             22
  CLUS_2            0             11
  CLUS_3            5              9
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BRDT MUTATED        2      4      2
  BRDT WILD-TYPE      6     15     21
D26V6, multiclass
        clus
vv       BRDT MUTATED BRDT WILD-TYPE
  CLUS_1            2              6
  CLUS_2            4             15
  CLUS_3            2             21
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BRDT MUTATED        2      1      5
  BRDT WILD-TYPE     19      8     15
D26V7, multiclass
        clus
vv       BRDT MUTATED BRDT WILD-TYPE
  CLUS_1            2             19
  CLUS_2            1              8
  CLUS_3            5             15
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BRDT MUTATED        2      2      4
  BRDT WILD-TYPE      7     20     15
D26V8, multiclass
        clus
vv       BRDT MUTATED BRDT WILD-TYPE
  CLUS_1            2              7
  CLUS_2            2             20
  CLUS_3            4             15

Clustering(27) Variable = CXXC4 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CXXC4 MUTATED        2      2      1
  CXXC4 WILD-TYPE     11     27     13
D27V1, multiclass
        clus
vv       CXXC4 MUTATED CXXC4 WILD-TYPE
  CLUS_1             2              11
  CLUS_2             2              27
  CLUS_3             1              13
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CXXC4 MUTATED        1      3      2
  CXXC4 WILD-TYPE     17     21     12
D27V2, multiclass
        clus
vv       CXXC4 MUTATED CXXC4 WILD-TYPE
  CLUS_1             1              17
  CLUS_2             3              21
  CLUS_3             2              12
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CXXC4 MUTATED        3      1      1      1
  CXXC4 WILD-TYPE     15     11      8      7
D27V3, multiclass
        clus
vv       CXXC4 MUTATED CXXC4 WILD-TYPE
  CLUS_1             3              15
  CLUS_2             1              11
  CLUS_3             1               8
  CLUS_4             1               7
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CXXC4 MUTATED        1      2      3
  CXXC4 WILD-TYPE      3     16     22
D27V4, multiclass
        clus
vv       CXXC4 MUTATED CXXC4 WILD-TYPE
  CLUS_1             1               3
  CLUS_2             2              16
  CLUS_3             3              22
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CXXC4 MUTATED        4      1      1
  CXXC4 WILD-TYPE     21     10     13
D27V5, multiclass
        clus
vv       CXXC4 MUTATED CXXC4 WILD-TYPE
  CLUS_1             4              21
  CLUS_2             1              10
  CLUS_3             1              13
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CXXC4 MUTATED        1      1      4
  CXXC4 WILD-TYPE      7     18     19
D27V6, multiclass
        clus
vv       CXXC4 MUTATED CXXC4 WILD-TYPE
  CLUS_1             1               7
  CLUS_2             1              18
  CLUS_3             4              19
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CXXC4 MUTATED        3      1      2
  CXXC4 WILD-TYPE     18      8     18
D27V7, multiclass
        clus
vv       CXXC4 MUTATED CXXC4 WILD-TYPE
  CLUS_1             3              18
  CLUS_2             1               8
  CLUS_3             2              18
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CXXC4 MUTATED        1      4      1
  CXXC4 WILD-TYPE      8     18     18
D27V8, multiclass
        clus
vv       CXXC4 MUTATED CXXC4 WILD-TYPE
  CLUS_1             1               8
  CLUS_2             4              18
  CLUS_3             1              18

Clustering(28) Variable = MBD3 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MBD3 MUTATED        1      3      2
  MBD3 WILD-TYPE     12     26     12
D28V1, multiclass
        clus
vv       MBD3 MUTATED MBD3 WILD-TYPE
  CLUS_1            1             12
  CLUS_2            3             26
  CLUS_3            2             12
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MBD3 MUTATED        2      2      2
  MBD3 WILD-TYPE     16     22     12
D28V2, multiclass
        clus
vv       MBD3 MUTATED MBD3 WILD-TYPE
  CLUS_1            2             16
  CLUS_2            2             22
  CLUS_3            2             12
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MBD3 MUTATED        3      1      0      1
  MBD3 WILD-TYPE     15     11      9      7
D28V3, multiclass
        clus
vv       MBD3 MUTATED MBD3 WILD-TYPE
  CLUS_1            3             15
  CLUS_2            1             11
  CLUS_3            0              9
  CLUS_4            1              7
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MBD3 MUTATED        0      3      2
  MBD3 WILD-TYPE      4     15     23
D28V4, multiclass
        clus
vv       MBD3 MUTATED MBD3 WILD-TYPE
  CLUS_1            0              4
  CLUS_2            3             15
  CLUS_3            2             23
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MBD3 MUTATED        4      0      2
  MBD3 WILD-TYPE     21     11     12
D28V5, multiclass
        clus
vv       MBD3 MUTATED MBD3 WILD-TYPE
  CLUS_1            4             21
  CLUS_2            0             11
  CLUS_3            2             12
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MBD3 MUTATED        1      2      3
  MBD3 WILD-TYPE      7     17     20
D28V6, multiclass
        clus
vv       MBD3 MUTATED MBD3 WILD-TYPE
  CLUS_1            1              7
  CLUS_2            2             17
  CLUS_3            3             20
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MBD3 MUTATED        3      1      2
  MBD3 WILD-TYPE     18      8     18
D28V7, multiclass
        clus
vv       MBD3 MUTATED MBD3 WILD-TYPE
  CLUS_1            3             18
  CLUS_2            1              8
  CLUS_3            2             18
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MBD3 MUTATED        1      3      2
  MBD3 WILD-TYPE      8     19     17
D28V8, multiclass
        clus
vv       MBD3 MUTATED MBD3 WILD-TYPE
  CLUS_1            1              8
  CLUS_2            3             19
  CLUS_3            2             17

Clustering(29) Variable = TULP1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TULP1 MUTATED        1      5      0
  TULP1 WILD-TYPE     12     24     14
D29V1, multiclass
        clus
vv       TULP1 MUTATED TULP1 WILD-TYPE
  CLUS_1             1              12
  CLUS_2             5              24
  CLUS_3             0              14
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TULP1 MUTATED        1      4      1
  TULP1 WILD-TYPE     17     20     13
D29V2, multiclass
        clus
vv       TULP1 MUTATED TULP1 WILD-TYPE
  CLUS_1             1              17
  CLUS_2             4              20
  CLUS_3             1              13
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TULP1 MUTATED        1      1      3      1
  TULP1 WILD-TYPE     17     11      6      7
D29V3, multiclass
        clus
vv       TULP1 MUTATED TULP1 WILD-TYPE
  CLUS_1             1              17
  CLUS_2             1              11
  CLUS_3             3               6
  CLUS_4             1               7
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TULP1 MUTATED        0      1      5
  TULP1 WILD-TYPE      4     17     20
D29V4, multiclass
        clus
vv       TULP1 MUTATED TULP1 WILD-TYPE
  CLUS_1             0               4
  CLUS_2             1              17
  CLUS_3             5              20
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TULP1 MUTATED        1      1      4
  TULP1 WILD-TYPE     24     10     10
D29V5, multiclass
        clus
vv       TULP1 MUTATED TULP1 WILD-TYPE
  CLUS_1             1              24
  CLUS_2             1              10
  CLUS_3             4              10
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TULP1 MUTATED        3      1      2
  TULP1 WILD-TYPE      5     18     21
D29V6, multiclass
        clus
vv       TULP1 MUTATED TULP1 WILD-TYPE
  CLUS_1             3               5
  CLUS_2             1              18
  CLUS_3             2              21
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TULP1 MUTATED        1      1      4
  TULP1 WILD-TYPE     20      8     16
D29V7, multiclass
        clus
vv       TULP1 MUTATED TULP1 WILD-TYPE
  CLUS_1             1              20
  CLUS_2             1               8
  CLUS_3             4              16
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TULP1 MUTATED        4      1      1
  TULP1 WILD-TYPE      5     21     18
D29V8, multiclass
        clus
vv       TULP1 MUTATED TULP1 WILD-TYPE
  CLUS_1             4               5
  CLUS_2             1              21
  CLUS_3             1              18

Clustering(30) Variable = PHF13 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PHF13 MUTATED        1      3      0
  PHF13 WILD-TYPE     12     26     14
D30V1, multiclass
        clus
vv       PHF13 MUTATED PHF13 WILD-TYPE
  CLUS_1             1              12
  CLUS_2             3              26
  CLUS_3             0              14
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PHF13 MUTATED        0      4      0
  PHF13 WILD-TYPE     18     20     14
D30V2, multiclass
        clus
vv       PHF13 MUTATED PHF13 WILD-TYPE
  CLUS_1             0              18
  CLUS_2             4              20
  CLUS_3             0              14
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PHF13 MUTATED        0      2      1      1
  PHF13 WILD-TYPE     18     10      8      7
D30V3, multiclass
        clus
vv       PHF13 MUTATED PHF13 WILD-TYPE
  CLUS_1             0              18
  CLUS_2             2              10
  CLUS_3             1               8
  CLUS_4             1               7
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PHF13 MUTATED        1      0      3
  PHF13 WILD-TYPE      3     18     22
D30V4, multiclass
        clus
vv       PHF13 MUTATED PHF13 WILD-TYPE
  CLUS_1             1               3
  CLUS_2             0              18
  CLUS_3             3              22
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PHF13 MUTATED        1      2      1
  PHF13 WILD-TYPE     24      9     13
D30V5, multiclass
        clus
vv       PHF13 MUTATED PHF13 WILD-TYPE
  CLUS_1             1              24
  CLUS_2             2               9
  CLUS_3             1              13
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PHF13 MUTATED        1      2      1
  PHF13 WILD-TYPE      7     17     22
D30V6, multiclass
        clus
vv       PHF13 MUTATED PHF13 WILD-TYPE
  CLUS_1             1               7
  CLUS_2             2              17
  CLUS_3             1              22
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PHF13 MUTATED        0      2      2
  PHF13 WILD-TYPE     21      7     18
D30V7, multiclass
        clus
vv       PHF13 MUTATED PHF13 WILD-TYPE
  CLUS_1             0              21
  CLUS_2             2               7
  CLUS_3             2              18
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PHF13 MUTATED        1      1      2
  PHF13 WILD-TYPE      8     21     17
D30V8, multiclass
        clus
vv       PHF13 MUTATED PHF13 WILD-TYPE
  CLUS_1             1               8
  CLUS_2             1              21
  CLUS_3             2              17

Clustering(31) Variable = BHLHB9 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  BHLHB9 MUTATED        2      1      2
  BHLHB9 WILD-TYPE     11     28     12
D31V1, multiclass
        clus
vv       BHLHB9 MUTATED BHLHB9 WILD-TYPE
  CLUS_1              2               11
  CLUS_2              1               28
  CLUS_3              2               12
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  BHLHB9 MUTATED        2      0      3
  BHLHB9 WILD-TYPE     16     24     11
D31V2, multiclass
        clus
vv       BHLHB9 MUTATED BHLHB9 WILD-TYPE
  CLUS_1              2               16
  CLUS_2              0               24
  CLUS_3              3               11
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BHLHB9 MUTATED        4      0      0      0
  BHLHB9 WILD-TYPE     14     12      9      8
D31V3, multiclass
        clus
vv       BHLHB9 MUTATED BHLHB9 WILD-TYPE
  CLUS_1              4               14
  CLUS_2              0               12
  CLUS_3              0                9
  CLUS_4              0                8
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  BHLHB9 MUTATED        0      4      0
  BHLHB9 WILD-TYPE      4     14     25
D31V4, multiclass
        clus
vv       BHLHB9 MUTATED BHLHB9 WILD-TYPE
  CLUS_1              0                4
  CLUS_2              4               14
  CLUS_3              0               25
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  BHLHB9 MUTATED        5      0      0
  BHLHB9 WILD-TYPE     20     11     14
D31V5, multiclass
        clus
vv       BHLHB9 MUTATED BHLHB9 WILD-TYPE
  CLUS_1              5               20
  CLUS_2              0               11
  CLUS_3              0               14
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  BHLHB9 MUTATED        0      0      5
  BHLHB9 WILD-TYPE      8     19     18
D31V6, multiclass
        clus
vv       BHLHB9 MUTATED BHLHB9 WILD-TYPE
  CLUS_1              0                8
  CLUS_2              0               19
  CLUS_3              5               18
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  BHLHB9 MUTATED        5      0      0
  BHLHB9 WILD-TYPE     16      9     20
D31V7, multiclass
        clus
vv       BHLHB9 MUTATED BHLHB9 WILD-TYPE
  CLUS_1              5               16
  CLUS_2              0                9
  CLUS_3              0               20
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  BHLHB9 MUTATED        0      5      0
  BHLHB9 WILD-TYPE      9     17     19
D31V8, multiclass
        clus
vv       BHLHB9 MUTATED BHLHB9 WILD-TYPE
  CLUS_1              0                9
  CLUS_2              5               17
  CLUS_3              0               19

Clustering(32) Variable = PRDM8 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PRDM8 MUTATED        1      5      0
  PRDM8 WILD-TYPE     12     24     14
D32V1, multiclass
        clus
vv       PRDM8 MUTATED PRDM8 WILD-TYPE
  CLUS_1             1              12
  CLUS_2             5              24
  CLUS_3             0              14
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PRDM8 MUTATED        1      3      2
  PRDM8 WILD-TYPE     17     21     12
D32V2, multiclass
        clus
vv       PRDM8 MUTATED PRDM8 WILD-TYPE
  CLUS_1             1              17
  CLUS_2             3              21
  CLUS_3             2              12
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRDM8 MUTATED        2      2      1      0
  PRDM8 WILD-TYPE     16     10      8      8
D32V3, multiclass
        clus
vv       PRDM8 MUTATED PRDM8 WILD-TYPE
  CLUS_1             2              16
  CLUS_2             2              10
  CLUS_3             1               8
  CLUS_4             0               8
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PRDM8 MUTATED        0      2      3
  PRDM8 WILD-TYPE      4     16     22
D32V4, multiclass
        clus
vv       PRDM8 MUTATED PRDM8 WILD-TYPE
  CLUS_1             0               4
  CLUS_2             2              16
  CLUS_3             3              22
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PRDM8 MUTATED        2      3      1
  PRDM8 WILD-TYPE     23      8     13
D32V5, multiclass
        clus
vv       PRDM8 MUTATED PRDM8 WILD-TYPE
  CLUS_1             2              23
  CLUS_2             3               8
  CLUS_3             1              13
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PRDM8 MUTATED        0      5      1
  PRDM8 WILD-TYPE      8     14     22
D32V6, multiclass
        clus
vv       PRDM8 MUTATED PRDM8 WILD-TYPE
  CLUS_1             0               8
  CLUS_2             5              14
  CLUS_3             1              22
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PRDM8 MUTATED        1      2      3
  PRDM8 WILD-TYPE     20      7     17
D32V7, multiclass
        clus
vv       PRDM8 MUTATED PRDM8 WILD-TYPE
  CLUS_1             1              20
  CLUS_2             2               7
  CLUS_3             3              17
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PRDM8 MUTATED        0      1      5
  PRDM8 WILD-TYPE      9     21     14
D32V8, multiclass
        clus
vv       PRDM8 MUTATED PRDM8 WILD-TYPE
  CLUS_1             0               9
  CLUS_2             1              21
  CLUS_3             5              14

Clustering(33) Variable = SMAD4 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SMAD4 MUTATED        5      4      1
  SMAD4 WILD-TYPE      8     25     13
D33V1, multiclass
        clus
vv       SMAD4 MUTATED SMAD4 WILD-TYPE
  CLUS_1             5               8
  CLUS_2             4              25
  CLUS_3             1              13
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SMAD4 MUTATED        4      1      5
  SMAD4 WILD-TYPE     14     23      9
D33V2, multiclass
        clus
vv       SMAD4 MUTATED SMAD4 WILD-TYPE
  CLUS_1             4              14
  CLUS_2             1              23
  CLUS_3             5               9
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMAD4 MUTATED        6      2      0      1
  SMAD4 WILD-TYPE     12     10      9      7
D33V3, multiclass
        clus
vv       SMAD4 MUTATED SMAD4 WILD-TYPE
  CLUS_1             6              12
  CLUS_2             2              10
  CLUS_3             0               9
  CLUS_4             1               7
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SMAD4 MUTATED        0      6      3
  SMAD4 WILD-TYPE      4     12     22
D33V4, multiclass
        clus
vv       SMAD4 MUTATED SMAD4 WILD-TYPE
  CLUS_1             0               4
  CLUS_2             6              12
  CLUS_3             3              22
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SMAD4 MUTATED        7      2      0
  SMAD4 WILD-TYPE     18      9     14
D33V5, multiclass
        clus
vv       SMAD4 MUTATED SMAD4 WILD-TYPE
  CLUS_1             7              18
  CLUS_2             2               9
  CLUS_3             0              14
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SMAD4 MUTATED        0      3      6
  SMAD4 WILD-TYPE      8     16     17
D33V6, multiclass
        clus
vv       SMAD4 MUTATED SMAD4 WILD-TYPE
  CLUS_1             0               8
  CLUS_2             3              16
  CLUS_3             6              17
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SMAD4 MUTATED        6      2      1
  SMAD4 WILD-TYPE     15      7     19
D33V7, multiclass
        clus
vv       SMAD4 MUTATED SMAD4 WILD-TYPE
  CLUS_1             6              15
  CLUS_2             2               7
  CLUS_3             1              19
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SMAD4 MUTATED        0      6      3
  SMAD4 WILD-TYPE      9     16     16
D33V8, multiclass
        clus
vv       SMAD4 MUTATED SMAD4 WILD-TYPE
  CLUS_1             0               9
  CLUS_2             6              16
  CLUS_3             3              16

Clustering(34) Variable = C14ORF43 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C14ORF43 MUTATED        1      5      1
  C14ORF43 WILD-TYPE     12     24     13
D34V1, multiclass
        clus
vv       C14ORF43 MUTATED C14ORF43 WILD-TYPE
  CLUS_1                1                 12
  CLUS_2                5                 24
  CLUS_3                1                 13
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C14ORF43 MUTATED        1      2      4
  C14ORF43 WILD-TYPE     17     22     10
D34V2, multiclass
        clus
vv       C14ORF43 MUTATED C14ORF43 WILD-TYPE
  CLUS_1                1                 17
  CLUS_2                2                 22
  CLUS_3                4                 10
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C14ORF43 MUTATED        2      1      1      3
  C14ORF43 WILD-TYPE     16     11      8      5
D34V3, multiclass
        clus
vv       C14ORF43 MUTATED C14ORF43 WILD-TYPE
  CLUS_1                2                 16
  CLUS_2                1                 11
  CLUS_3                1                  8
  CLUS_4                3                  5
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C14ORF43 MUTATED        1      3      3
  C14ORF43 WILD-TYPE      3     15     22
D34V4, multiclass
        clus
vv       C14ORF43 MUTATED C14ORF43 WILD-TYPE
  CLUS_1                1                  3
  CLUS_2                3                 15
  CLUS_3                3                 22
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C14ORF43 MUTATED        4      1      2
  C14ORF43 WILD-TYPE     21     10     12
D34V5, multiclass
        clus
vv       C14ORF43 MUTATED C14ORF43 WILD-TYPE
  CLUS_1                4                 21
  CLUS_2                1                 10
  CLUS_3                2                 12
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C14ORF43 MUTATED        1      3      3
  C14ORF43 WILD-TYPE      7     16     20
D34V6, multiclass
        clus
vv       C14ORF43 MUTATED C14ORF43 WILD-TYPE
  CLUS_1                1                  7
  CLUS_2                3                 16
  CLUS_3                3                 20
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C14ORF43 MUTATED        2      2      3
  C14ORF43 WILD-TYPE     19      7     17
D34V7, multiclass
        clus
vv       C14ORF43 MUTATED C14ORF43 WILD-TYPE
  CLUS_1                2                 19
  CLUS_2                2                  7
  CLUS_3                3                 17
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C14ORF43 MUTATED        2      2      3
  C14ORF43 WILD-TYPE      7     20     16
D34V8, multiclass
        clus
vv       C14ORF43 MUTATED C14ORF43 WILD-TYPE
  CLUS_1                2                  7
  CLUS_2                2                 20
  CLUS_3                3                 16

Clustering(35) Variable = MEPCE MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MEPCE MUTATED        1      6      0
  MEPCE WILD-TYPE     12     23     14
D35V1, multiclass
        clus
vv       MEPCE MUTATED MEPCE WILD-TYPE
  CLUS_1             1              12
  CLUS_2             6              23
  CLUS_3             0              14
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MEPCE MUTATED        1      4      2
  MEPCE WILD-TYPE     17     20     12
D35V2, multiclass
        clus
vv       MEPCE MUTATED MEPCE WILD-TYPE
  CLUS_1             1              17
  CLUS_2             4              20
  CLUS_3             2              12
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MEPCE MUTATED        2      1      3      1
  MEPCE WILD-TYPE     16     11      6      7
D35V3, multiclass
        clus
vv       MEPCE MUTATED MEPCE WILD-TYPE
  CLUS_1             2              16
  CLUS_2             1              11
  CLUS_3             3               6
  CLUS_4             1               7
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MEPCE MUTATED        0      2      5
  MEPCE WILD-TYPE      4     16     20
D35V4, multiclass
        clus
vv       MEPCE MUTATED MEPCE WILD-TYPE
  CLUS_1             0               4
  CLUS_2             2              16
  CLUS_3             5              20
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MEPCE MUTATED        2      1      4
  MEPCE WILD-TYPE     23     10     10
D35V5, multiclass
        clus
vv       MEPCE MUTATED MEPCE WILD-TYPE
  CLUS_1             2              23
  CLUS_2             1              10
  CLUS_3             4              10
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MEPCE MUTATED        3      3      1
  MEPCE WILD-TYPE      5     16     22
D35V6, multiclass
        clus
vv       MEPCE MUTATED MEPCE WILD-TYPE
  CLUS_1             3               5
  CLUS_2             3              16
  CLUS_3             1              22
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MEPCE MUTATED        1      1      5
  MEPCE WILD-TYPE     20      8     15
D35V7, multiclass
        clus
vv       MEPCE MUTATED MEPCE WILD-TYPE
  CLUS_1             1              20
  CLUS_2             1               8
  CLUS_3             5              15
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MEPCE MUTATED        3      1      3
  MEPCE WILD-TYPE      6     21     16
D35V8, multiclass
        clus
vv       MEPCE MUTATED MEPCE WILD-TYPE
  CLUS_1             3               6
  CLUS_2             1              21
  CLUS_3             3              16

Clustering(36) Variable = HVCN1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HVCN1 MUTATED        1      3      0
  HVCN1 WILD-TYPE     12     26     14
D36V1, multiclass
        clus
vv       HVCN1 MUTATED HVCN1 WILD-TYPE
  CLUS_1             1              12
  CLUS_2             3              26
  CLUS_3             0              14
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HVCN1 MUTATED        1      2      1
  HVCN1 WILD-TYPE     17     22     13
D36V2, multiclass
        clus
vv       HVCN1 MUTATED HVCN1 WILD-TYPE
  CLUS_1             1              17
  CLUS_2             2              22
  CLUS_3             1              13
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HVCN1 MUTATED        1      0      3      0
  HVCN1 WILD-TYPE     17     12      6      8
D36V3, multiclass
        clus
vv       HVCN1 MUTATED HVCN1 WILD-TYPE
  CLUS_1             1              17
  CLUS_2             0              12
  CLUS_3             3               6
  CLUS_4             0               8
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HVCN1 MUTATED        0      1      3
  HVCN1 WILD-TYPE      4     17     22
D36V4, multiclass
        clus
vv       HVCN1 MUTATED HVCN1 WILD-TYPE
  CLUS_1             0               4
  CLUS_2             1              17
  CLUS_3             3              22
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HVCN1 MUTATED        1      0      3
  HVCN1 WILD-TYPE     24     11     11
D36V5, multiclass
        clus
vv       HVCN1 MUTATED HVCN1 WILD-TYPE
  CLUS_1             1              24
  CLUS_2             0              11
  CLUS_3             3              11
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HVCN1 MUTATED        2      0      2
  HVCN1 WILD-TYPE      6     19     21
D36V6, multiclass
        clus
vv       HVCN1 MUTATED HVCN1 WILD-TYPE
  CLUS_1             2               6
  CLUS_2             0              19
  CLUS_3             2              21
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HVCN1 MUTATED        1      0      3
  HVCN1 WILD-TYPE     20      9     17
D36V7, multiclass
        clus
vv       HVCN1 MUTATED HVCN1 WILD-TYPE
  CLUS_1             1              20
  CLUS_2             0               9
  CLUS_3             3              17
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HVCN1 MUTATED        3      1      0
  HVCN1 WILD-TYPE      6     21     19
D36V8, multiclass
        clus
vv       HVCN1 MUTATED HVCN1 WILD-TYPE
  CLUS_1             3               6
  CLUS_2             1              21
  CLUS_3             0              19

Clustering(37) Variable = FOXP2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FOXP2 MUTATED        2      5      1
  FOXP2 WILD-TYPE     11     24     13
D37V1, multiclass
        clus
vv       FOXP2 MUTATED FOXP2 WILD-TYPE
  CLUS_1             2              11
  CLUS_2             5              24
  CLUS_3             1              13
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FOXP2 MUTATED        2      5      1
  FOXP2 WILD-TYPE     16     19     13
D37V2, multiclass
        clus
vv       FOXP2 MUTATED FOXP2 WILD-TYPE
  CLUS_1             2              16
  CLUS_2             5              19
  CLUS_3             1              13
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FOXP2 MUTATED        2      1      3      1
  FOXP2 WILD-TYPE     16     11      6      7
D37V3, multiclass
        clus
vv       FOXP2 MUTATED FOXP2 WILD-TYPE
  CLUS_1             2              16
  CLUS_2             1              11
  CLUS_3             3               6
  CLUS_4             1               7
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FOXP2 MUTATED        0      2      5
  FOXP2 WILD-TYPE      4     16     20
D37V4, multiclass
        clus
vv       FOXP2 MUTATED FOXP2 WILD-TYPE
  CLUS_1             0               4
  CLUS_2             2              16
  CLUS_3             5              20
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FOXP2 MUTATED        3      0      5
  FOXP2 WILD-TYPE     22     11      9
D37V5, multiclass
        clus
vv       FOXP2 MUTATED FOXP2 WILD-TYPE
  CLUS_1             3              22
  CLUS_2             0              11
  CLUS_3             5               9
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FOXP2 MUTATED        3      2      3
  FOXP2 WILD-TYPE      5     17     20
D37V6, multiclass
        clus
vv       FOXP2 MUTATED FOXP2 WILD-TYPE
  CLUS_1             3               5
  CLUS_2             2              17
  CLUS_3             3              20
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FOXP2 MUTATED        3      0      5
  FOXP2 WILD-TYPE     18      9     15
D37V7, multiclass
        clus
vv       FOXP2 MUTATED FOXP2 WILD-TYPE
  CLUS_1             3              18
  CLUS_2             0               9
  CLUS_3             5              15
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FOXP2 MUTATED        3      3      2
  FOXP2 WILD-TYPE      6     19     17
D37V8, multiclass
        clus
vv       FOXP2 MUTATED FOXP2 WILD-TYPE
  CLUS_1             3               6
  CLUS_2             3              19
  CLUS_3             2              17

Clustering(38) Variable = GRIN1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GRIN1 MUTATED        1      4      0
  GRIN1 WILD-TYPE     12     25     14
D38V1, multiclass
        clus
vv       GRIN1 MUTATED GRIN1 WILD-TYPE
  CLUS_1             1              12
  CLUS_2             4              25
  CLUS_3             0              14
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GRIN1 MUTATED        1      2      2
  GRIN1 WILD-TYPE     17     22     12
D38V2, multiclass
        clus
vv       GRIN1 MUTATED GRIN1 WILD-TYPE
  CLUS_1             1              17
  CLUS_2             2              22
  CLUS_3             2              12
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GRIN1 MUTATED        2      0      3      0
  GRIN1 WILD-TYPE     16     12      6      8
D38V3, multiclass
        clus
vv       GRIN1 MUTATED GRIN1 WILD-TYPE
  CLUS_1             2              16
  CLUS_2             0              12
  CLUS_3             3               6
  CLUS_4             0               8
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GRIN1 MUTATED        0      2      3
  GRIN1 WILD-TYPE      4     16     22
D38V4, multiclass
        clus
vv       GRIN1 MUTATED GRIN1 WILD-TYPE
  CLUS_1             0               4
  CLUS_2             2              16
  CLUS_3             3              22
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GRIN1 MUTATED        2      0      3
  GRIN1 WILD-TYPE     23     11     11
D38V5, multiclass
        clus
vv       GRIN1 MUTATED GRIN1 WILD-TYPE
  CLUS_1             2              23
  CLUS_2             0              11
  CLUS_3             3              11
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GRIN1 MUTATED        1      2      2
  GRIN1 WILD-TYPE      7     17     21
D38V6, multiclass
        clus
vv       GRIN1 MUTATED GRIN1 WILD-TYPE
  CLUS_1             1               7
  CLUS_2             2              17
  CLUS_3             2              21
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GRIN1 MUTATED        1      1      3
  GRIN1 WILD-TYPE     20      8     17
D38V7, multiclass
        clus
vv       GRIN1 MUTATED GRIN1 WILD-TYPE
  CLUS_1             1              20
  CLUS_2             1               8
  CLUS_3             3              17
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GRIN1 MUTATED        2      1      2
  GRIN1 WILD-TYPE      7     21     17
D38V8, multiclass
        clus
vv       GRIN1 MUTATED GRIN1 WILD-TYPE
  CLUS_1             2               7
  CLUS_2             1              21
  CLUS_3             2              17

Clustering(39) Variable = MAGEA10 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  MAGEA10 MUTATED        0      4      0
  MAGEA10 WILD-TYPE     13     25     14
D39V1, multiclass
        clus
vv       MAGEA10 MUTATED MAGEA10 WILD-TYPE
  CLUS_1               0                13
  CLUS_2               4                25
  CLUS_3               0                14
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  MAGEA10 MUTATED        0      3      1
  MAGEA10 WILD-TYPE     18     21     13
D39V2, multiclass
        clus
vv       MAGEA10 MUTATED MAGEA10 WILD-TYPE
  CLUS_1               0                18
  CLUS_2               3                21
  CLUS_3               1                13
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAGEA10 MUTATED        0      2      2      0
  MAGEA10 WILD-TYPE     18     10      7      8
D39V3, multiclass
        clus
vv       MAGEA10 MUTATED MAGEA10 WILD-TYPE
  CLUS_1               0                18
  CLUS_2               2                10
  CLUS_3               2                 7
  CLUS_4               0                 8
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  MAGEA10 MUTATED        0      0      4
  MAGEA10 WILD-TYPE      4     18     21
D39V4, multiclass
        clus
vv       MAGEA10 MUTATED MAGEA10 WILD-TYPE
  CLUS_1               0                 4
  CLUS_2               0                18
  CLUS_3               4                21
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  MAGEA10 MUTATED        0      2      2
  MAGEA10 WILD-TYPE     25      9     12
D39V5, multiclass
        clus
vv       MAGEA10 MUTATED MAGEA10 WILD-TYPE
  CLUS_1               0                25
  CLUS_2               2                 9
  CLUS_3               2                12
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  MAGEA10 MUTATED        1      2      1
  MAGEA10 WILD-TYPE      7     17     22
D39V6, multiclass
        clus
vv       MAGEA10 MUTATED MAGEA10 WILD-TYPE
  CLUS_1               1                 7
  CLUS_2               2                17
  CLUS_3               1                22
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  MAGEA10 MUTATED        0      1      3
  MAGEA10 WILD-TYPE     21      8     17
D39V7, multiclass
        clus
vv       MAGEA10 MUTATED MAGEA10 WILD-TYPE
  CLUS_1               0                21
  CLUS_2               1                 8
  CLUS_3               3                17
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  MAGEA10 MUTATED        2      0      2
  MAGEA10 WILD-TYPE      7     22     17
D39V8, multiclass
        clus
vv       MAGEA10 MUTATED MAGEA10 WILD-TYPE
  CLUS_1               2                 7
  CLUS_2               0                22
  CLUS_3               2                17

Clustering(40) Variable = C16ORF79 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C16ORF79 MUTATED        1      2      1
  C16ORF79 WILD-TYPE     12     27     13
D40V1, multiclass
        clus
vv       C16ORF79 MUTATED C16ORF79 WILD-TYPE
  CLUS_1                1                 12
  CLUS_2                2                 27
  CLUS_3                1                 13
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C16ORF79 MUTATED        1      2      1
  C16ORF79 WILD-TYPE     17     22     13
D40V2, multiclass
        clus
vv       C16ORF79 MUTATED C16ORF79 WILD-TYPE
  CLUS_1                1                 17
  CLUS_2                2                 22
  CLUS_3                1                 13
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C16ORF79 MUTATED        2      1      1      0
  C16ORF79 WILD-TYPE     16     11      8      8
D40V3, multiclass
        clus
vv       C16ORF79 MUTATED C16ORF79 WILD-TYPE
  CLUS_1                2                 16
  CLUS_2                1                 11
  CLUS_3                1                  8
  CLUS_4                0                  8
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C16ORF79 MUTATED        0      2      2
  C16ORF79 WILD-TYPE      4     16     23
D40V4, multiclass
        clus
vv       C16ORF79 MUTATED C16ORF79 WILD-TYPE
  CLUS_1                0                  4
  CLUS_2                2                 16
  CLUS_3                2                 23
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C16ORF79 MUTATED        2      1      1
  C16ORF79 WILD-TYPE     23     10     13
D40V5, multiclass
        clus
vv       C16ORF79 MUTATED C16ORF79 WILD-TYPE
  CLUS_1                2                 23
  CLUS_2                1                 10
  CLUS_3                1                 13
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C16ORF79 MUTATED        0      2      2
  C16ORF79 WILD-TYPE      8     17     21
D40V6, multiclass
        clus
vv       C16ORF79 MUTATED C16ORF79 WILD-TYPE
  CLUS_1                0                  8
  CLUS_2                2                 17
  CLUS_3                2                 21
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C16ORF79 MUTATED        2      0      2
  C16ORF79 WILD-TYPE     19      9     18
D40V7, multiclass
        clus
vv       C16ORF79 MUTATED C16ORF79 WILD-TYPE
  CLUS_1                2                 19
  CLUS_2                0                  9
  CLUS_3                2                 18
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C16ORF79 MUTATED        0      2      2
  C16ORF79 WILD-TYPE      9     20     17
D40V8, multiclass
        clus
vv       C16ORF79 MUTATED C16ORF79 WILD-TYPE
  CLUS_1                0                  9
  CLUS_2                2                 20
  CLUS_3                2                 17

Clustering(41) Variable = ERF MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  ERF MUTATED        0      5      1
  ERF WILD-TYPE     13     24     13
D41V1, multiclass
        clus
vv       ERF MUTATED ERF WILD-TYPE
  CLUS_1           0            13
  CLUS_2           5            24
  CLUS_3           1            13
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  ERF MUTATED        0      4      2
  ERF WILD-TYPE     18     20     12
D41V2, multiclass
        clus
vv       ERF MUTATED ERF WILD-TYPE
  CLUS_1           0            18
  CLUS_2           4            20
  CLUS_3           2            12
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ERF MUTATED        1      1      3      0
  ERF WILD-TYPE     17     11      6      8
D41V3, multiclass
        clus
vv       ERF MUTATED ERF WILD-TYPE
  CLUS_1           1            17
  CLUS_2           1            11
  CLUS_3           3             6
  CLUS_4           0             8
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  ERF MUTATED        0      1      4
  ERF WILD-TYPE      4     17     21
D41V4, multiclass
        clus
vv       ERF MUTATED ERF WILD-TYPE
  CLUS_1           0             4
  CLUS_2           1            17
  CLUS_3           4            21
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  ERF MUTATED        2      0      4
  ERF WILD-TYPE     23     11     10
D41V5, multiclass
        clus
vv       ERF MUTATED ERF WILD-TYPE
  CLUS_1           2            23
  CLUS_2           0            11
  CLUS_3           4            10
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  ERF MUTATED        2      3      1
  ERF WILD-TYPE      6     16     22
D41V6, multiclass
        clus
vv       ERF MUTATED ERF WILD-TYPE
  CLUS_1           2             6
  CLUS_2           3            16
  CLUS_3           1            22
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  ERF MUTATED        1      1      4
  ERF WILD-TYPE     20      8     16
D41V7, multiclass
        clus
vv       ERF MUTATED ERF WILD-TYPE
  CLUS_1           1            20
  CLUS_2           1             8
  CLUS_3           4            16
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  ERF MUTATED        2      1      3
  ERF WILD-TYPE      7     21     16
D41V8, multiclass
        clus
vv       ERF MUTATED ERF WILD-TYPE
  CLUS_1           2             7
  CLUS_2           1            21
  CLUS_3           3            16

Clustering(42) Variable = IFNGR2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  IFNGR2 MUTATED        1      3      0
  IFNGR2 WILD-TYPE     12     26     14
D42V1, multiclass
        clus
vv       IFNGR2 MUTATED IFNGR2 WILD-TYPE
  CLUS_1              1               12
  CLUS_2              3               26
  CLUS_3              0               14
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  IFNGR2 MUTATED        0      2      2
  IFNGR2 WILD-TYPE     18     22     12
D42V2, multiclass
        clus
vv       IFNGR2 MUTATED IFNGR2 WILD-TYPE
  CLUS_1              0               18
  CLUS_2              2               22
  CLUS_3              2               12
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IFNGR2 MUTATED        1      0      1      2
  IFNGR2 WILD-TYPE     17     12      8      6
D42V3, multiclass
        clus
vv       IFNGR2 MUTATED IFNGR2 WILD-TYPE
  CLUS_1              1               17
  CLUS_2              0               12
  CLUS_3              1                8
  CLUS_4              2                6
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  IFNGR2 MUTATED        1      1      2
  IFNGR2 WILD-TYPE      3     17     23
D42V4, multiclass
        clus
vv       IFNGR2 MUTATED IFNGR2 WILD-TYPE
  CLUS_1              1                3
  CLUS_2              1               17
  CLUS_3              2               23
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  IFNGR2 MUTATED        2      0      2
  IFNGR2 WILD-TYPE     23     11     12
D42V5, multiclass
        clus
vv       IFNGR2 MUTATED IFNGR2 WILD-TYPE
  CLUS_1              2               23
  CLUS_2              0               11
  CLUS_3              2               12
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  IFNGR2 MUTATED        1      2      1
  IFNGR2 WILD-TYPE      7     17     22
D42V6, multiclass
        clus
vv       IFNGR2 MUTATED IFNGR2 WILD-TYPE
  CLUS_1              1                7
  CLUS_2              2               17
  CLUS_3              1               22
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  IFNGR2 MUTATED        1      1      2
  IFNGR2 WILD-TYPE     20      8     18
D42V7, multiclass
        clus
vv       IFNGR2 MUTATED IFNGR2 WILD-TYPE
  CLUS_1              1               20
  CLUS_2              1                8
  CLUS_3              2               18
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  IFNGR2 MUTATED        1      1      2
  IFNGR2 WILD-TYPE      8     21     17
D42V8, multiclass
        clus
vv       IFNGR2 MUTATED IFNGR2 WILD-TYPE
  CLUS_1              1                8
  CLUS_2              1               21
  CLUS_3              2               17

Clustering(43) Variable = OLIG3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OLIG3 MUTATED        2      2      1
  OLIG3 WILD-TYPE     11     27     13
D43V1, multiclass
        clus
vv       OLIG3 MUTATED OLIG3 WILD-TYPE
  CLUS_1             2              11
  CLUS_2             2              27
  CLUS_3             1              13
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OLIG3 MUTATED        2      1      2
  OLIG3 WILD-TYPE     16     23     12
D43V2, multiclass
        clus
vv       OLIG3 MUTATED OLIG3 WILD-TYPE
  CLUS_1             2              16
  CLUS_2             1              23
  CLUS_3             2              12
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OLIG3 MUTATED        4      0      0      1
  OLIG3 WILD-TYPE     14     12      9      7
D43V3, multiclass
        clus
vv       OLIG3 MUTATED OLIG3 WILD-TYPE
  CLUS_1             4              14
  CLUS_2             0              12
  CLUS_3             0               9
  CLUS_4             1               7
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OLIG3 MUTATED        1      4      0
  OLIG3 WILD-TYPE      3     14     25
D43V4, multiclass
        clus
vv       OLIG3 MUTATED OLIG3 WILD-TYPE
  CLUS_1             1               3
  CLUS_2             4              14
  CLUS_3             0              25
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OLIG3 MUTATED        5      0      0
  OLIG3 WILD-TYPE     20     11     14
D43V5, multiclass
        clus
vv       OLIG3 MUTATED OLIG3 WILD-TYPE
  CLUS_1             5              20
  CLUS_2             0              11
  CLUS_3             0              14
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OLIG3 MUTATED        0      1      4
  OLIG3 WILD-TYPE      8     18     19
D43V6, multiclass
        clus
vv       OLIG3 MUTATED OLIG3 WILD-TYPE
  CLUS_1             0               8
  CLUS_2             1              18
  CLUS_3             4              19
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OLIG3 MUTATED        3      2      0
  OLIG3 WILD-TYPE     18      7     20
D43V7, multiclass
        clus
vv       OLIG3 MUTATED OLIG3 WILD-TYPE
  CLUS_1             3              18
  CLUS_2             2               7
  CLUS_3             0              20
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OLIG3 MUTATED        0      4      1
  OLIG3 WILD-TYPE      9     18     18
D43V8, multiclass
        clus
vv       OLIG3 MUTATED OLIG3 WILD-TYPE
  CLUS_1             0               9
  CLUS_2             4              18
  CLUS_3             1              18

Clustering(44) Variable = NDEL1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NDEL1 MUTATED        1      3      0
  NDEL1 WILD-TYPE     12     26     14
D44V1, multiclass
        clus
vv       NDEL1 MUTATED NDEL1 WILD-TYPE
  CLUS_1             1              12
  CLUS_2             3              26
  CLUS_3             0              14
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NDEL1 MUTATED        1      2      1
  NDEL1 WILD-TYPE     17     22     13
D44V2, multiclass
        clus
vv       NDEL1 MUTATED NDEL1 WILD-TYPE
  CLUS_1             1              17
  CLUS_2             2              22
  CLUS_3             1              13
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NDEL1 MUTATED        1      0      3      0
  NDEL1 WILD-TYPE     17     12      6      8
D44V3, multiclass
        clus
vv       NDEL1 MUTATED NDEL1 WILD-TYPE
  CLUS_1             1              17
  CLUS_2             0              12
  CLUS_3             3               6
  CLUS_4             0               8
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NDEL1 MUTATED        0      1      3
  NDEL1 WILD-TYPE      4     17     22
D44V4, multiclass
        clus
vv       NDEL1 MUTATED NDEL1 WILD-TYPE
  CLUS_1             0               4
  CLUS_2             1              17
  CLUS_3             3              22
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NDEL1 MUTATED        1      0      3
  NDEL1 WILD-TYPE     24     11     11
D44V5, multiclass
        clus
vv       NDEL1 MUTATED NDEL1 WILD-TYPE
  CLUS_1             1              24
  CLUS_2             0              11
  CLUS_3             3              11
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NDEL1 MUTATED        1      1      2
  NDEL1 WILD-TYPE      7     18     21
D44V6, multiclass
        clus
vv       NDEL1 MUTATED NDEL1 WILD-TYPE
  CLUS_1             1               7
  CLUS_2             1              18
  CLUS_3             2              21
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NDEL1 MUTATED        1      0      3
  NDEL1 WILD-TYPE     20      9     17
D44V7, multiclass
        clus
vv       NDEL1 MUTATED NDEL1 WILD-TYPE
  CLUS_1             1              20
  CLUS_2             0               9
  CLUS_3             3              17
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NDEL1 MUTATED        2      1      1
  NDEL1 WILD-TYPE      7     21     18
D44V8, multiclass
        clus
vv       NDEL1 MUTATED NDEL1 WILD-TYPE
  CLUS_1             2               7
  CLUS_2             1              21
  CLUS_3             1              18

Clustering(45) Variable = EGR1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EGR1 MUTATED        1      4      3
  EGR1 WILD-TYPE     12     25     11
D45V1, multiclass
        clus
vv       EGR1 MUTATED EGR1 WILD-TYPE
  CLUS_1            1             12
  CLUS_2            4             25
  CLUS_3            3             11
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EGR1 MUTATED        2      3      3
  EGR1 WILD-TYPE     16     21     11
D45V2, multiclass
        clus
vv       EGR1 MUTATED EGR1 WILD-TYPE
  CLUS_1            2             16
  CLUS_2            3             21
  CLUS_3            3             11
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EGR1 MUTATED        3      2      1      0
  EGR1 WILD-TYPE     15     10      8      8
D45V3, multiclass
        clus
vv       EGR1 MUTATED EGR1 WILD-TYPE
  CLUS_1            3             15
  CLUS_2            2             10
  CLUS_3            1              8
  CLUS_4            0              8
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EGR1 MUTATED        0      3      3
  EGR1 WILD-TYPE      4     15     22
D45V4, multiclass
        clus
vv       EGR1 MUTATED EGR1 WILD-TYPE
  CLUS_1            0              4
  CLUS_2            3             15
  CLUS_3            3             22
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EGR1 MUTATED        4      3      1
  EGR1 WILD-TYPE     21      8     13
D45V5, multiclass
        clus
vv       EGR1 MUTATED EGR1 WILD-TYPE
  CLUS_1            4             21
  CLUS_2            3              8
  CLUS_3            1             13
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EGR1 MUTATED        1      4      3
  EGR1 WILD-TYPE      7     15     20
D45V6, multiclass
        clus
vv       EGR1 MUTATED EGR1 WILD-TYPE
  CLUS_1            1              7
  CLUS_2            4             15
  CLUS_3            3             20
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EGR1 MUTATED        3      3      2
  EGR1 WILD-TYPE     18      6     18
D45V7, multiclass
        clus
vv       EGR1 MUTATED EGR1 WILD-TYPE
  CLUS_1            3             18
  CLUS_2            3              6
  CLUS_3            2             18
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EGR1 MUTATED        1      3      4
  EGR1 WILD-TYPE      8     19     15
D45V8, multiclass
        clus
vv       EGR1 MUTATED EGR1 WILD-TYPE
  CLUS_1            1              8
  CLUS_2            3             19
  CLUS_3            4             15

Clustering(46) Variable = CDH3 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CDH3 MUTATED        0      3      1
  CDH3 WILD-TYPE     13     26     13
D46V1, multiclass
        clus
vv       CDH3 MUTATED CDH3 WILD-TYPE
  CLUS_1            0             13
  CLUS_2            3             26
  CLUS_3            1             13
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CDH3 MUTATED        0      2      2
  CDH3 WILD-TYPE     18     22     12
D46V2, multiclass
        clus
vv       CDH3 MUTATED CDH3 WILD-TYPE
  CLUS_1            0             18
  CLUS_2            2             22
  CLUS_3            2             12
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDH3 MUTATED        0      3      0      0
  CDH3 WILD-TYPE     18      9      9      8
D46V3, multiclass
        clus
vv       CDH3 MUTATED CDH3 WILD-TYPE
  CLUS_1            0             18
  CLUS_2            3              9
  CLUS_3            0              9
  CLUS_4            0              8
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CDH3 MUTATED        0      0      3
  CDH3 WILD-TYPE      4     18     22
D46V4, multiclass
        clus
vv       CDH3 MUTATED CDH3 WILD-TYPE
  CLUS_1            0              4
  CLUS_2            0             18
  CLUS_3            3             22
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CDH3 MUTATED        1      3      0
  CDH3 WILD-TYPE     24      8     14
D46V5, multiclass
        clus
vv       CDH3 MUTATED CDH3 WILD-TYPE
  CLUS_1            1             24
  CLUS_2            3              8
  CLUS_3            0             14
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CDH3 MUTATED        0      3      1
  CDH3 WILD-TYPE      8     16     22
D46V6, multiclass
        clus
vv       CDH3 MUTATED CDH3 WILD-TYPE
  CLUS_1            0              8
  CLUS_2            3             16
  CLUS_3            1             22
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CDH3 MUTATED        1      0      3
  CDH3 WILD-TYPE     20      9     17
D46V7, multiclass
        clus
vv       CDH3 MUTATED CDH3 WILD-TYPE
  CLUS_1            1             20
  CLUS_2            0              9
  CLUS_3            3             17
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CDH3 MUTATED        0      1      3
  CDH3 WILD-TYPE      9     21     16
D46V8, multiclass
        clus
vv       CDH3 MUTATED CDH3 WILD-TYPE
  CLUS_1            0              9
  CLUS_2            1             21
  CLUS_3            3             16

Clustering(47) Variable = PCDHAC2 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PCDHAC2 MUTATED        4      3      2
  PCDHAC2 WILD-TYPE      9     26     12
D47V1, multiclass
        clus
vv       PCDHAC2 MUTATED PCDHAC2 WILD-TYPE
  CLUS_1               4                 9
  CLUS_2               3                26
  CLUS_3               2                12
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PCDHAC2 MUTATED        6      1      2
  PCDHAC2 WILD-TYPE     12     23     12
D47V2, multiclass
        clus
vv       PCDHAC2 MUTATED PCDHAC2 WILD-TYPE
  CLUS_1               6                12
  CLUS_2               1                23
  CLUS_3               2                12
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PCDHAC2 MUTATED        4      1      2      1
  PCDHAC2 WILD-TYPE     14     11      7      7
D47V3, multiclass
        clus
vv       PCDHAC2 MUTATED PCDHAC2 WILD-TYPE
  CLUS_1               4                14
  CLUS_2               1                11
  CLUS_3               2                 7
  CLUS_4               1                 7
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PCDHAC2 MUTATED        0      5      3
  PCDHAC2 WILD-TYPE      4     13     22
D47V4, multiclass
        clus
vv       PCDHAC2 MUTATED PCDHAC2 WILD-TYPE
  CLUS_1               0                 4
  CLUS_2               5                13
  CLUS_3               3                22
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PCDHAC2 MUTATED        5      1      2
  PCDHAC2 WILD-TYPE     20     10     12
D47V5, multiclass
        clus
vv       PCDHAC2 MUTATED PCDHAC2 WILD-TYPE
  CLUS_1               5                20
  CLUS_2               1                10
  CLUS_3               2                12
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PCDHAC2 MUTATED        1      3      4
  PCDHAC2 WILD-TYPE      7     16     19
D47V6, multiclass
        clus
vv       PCDHAC2 MUTATED PCDHAC2 WILD-TYPE
  CLUS_1               1                 7
  CLUS_2               3                16
  CLUS_3               4                19
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PCDHAC2 MUTATED        4      2      2
  PCDHAC2 WILD-TYPE     17      7     18
D47V7, multiclass
        clus
vv       PCDHAC2 MUTATED PCDHAC2 WILD-TYPE
  CLUS_1               4                17
  CLUS_2               2                 7
  CLUS_3               2                18
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PCDHAC2 MUTATED        1      4      3
  PCDHAC2 WILD-TYPE      8     18     16
D47V8, multiclass
        clus
vv       PCDHAC2 MUTATED PCDHAC2 WILD-TYPE
  CLUS_1               1                 8
  CLUS_2               4                18
  CLUS_3               3                16

Clustering(48) Variable = ZFP36 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZFP36 MUTATED        0      3      1
  ZFP36 WILD-TYPE     13     26     13
D48V1, multiclass
        clus
vv       ZFP36 MUTATED ZFP36 WILD-TYPE
  CLUS_1             0              13
  CLUS_2             3              26
  CLUS_3             1              13
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZFP36 MUTATED        0      3      1
  ZFP36 WILD-TYPE     18     21     13
D48V2, multiclass
        clus
vv       ZFP36 MUTATED ZFP36 WILD-TYPE
  CLUS_1             0              18
  CLUS_2             3              21
  CLUS_3             1              13
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZFP36 MUTATED        0      1      2      0
  ZFP36 WILD-TYPE     18     11      7      8
D48V3, multiclass
        clus
vv       ZFP36 MUTATED ZFP36 WILD-TYPE
  CLUS_1             0              18
  CLUS_2             1              11
  CLUS_3             2               7
  CLUS_4             0               8
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZFP36 MUTATED        0      0      3
  ZFP36 WILD-TYPE      4     18     22
D48V4, multiclass
        clus
vv       ZFP36 MUTATED ZFP36 WILD-TYPE
  CLUS_1             0               4
  CLUS_2             0              18
  CLUS_3             3              22
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZFP36 MUTATED        1      1      2
  ZFP36 WILD-TYPE     24     10     12
D48V5, multiclass
        clus
vv       ZFP36 MUTATED ZFP36 WILD-TYPE
  CLUS_1             1              24
  CLUS_2             1              10
  CLUS_3             2              12
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZFP36 MUTATED        0      3      1
  ZFP36 WILD-TYPE      8     16     22
D48V6, multiclass
        clus
vv       ZFP36 MUTATED ZFP36 WILD-TYPE
  CLUS_1             0               8
  CLUS_2             3              16
  CLUS_3             1              22
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZFP36 MUTATED        1      0      3
  ZFP36 WILD-TYPE     20      9     17
D48V7, multiclass
        clus
vv       ZFP36 MUTATED ZFP36 WILD-TYPE
  CLUS_1             1              20
  CLUS_2             0               9
  CLUS_3             3              17
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZFP36 MUTATED        0      1      3
  ZFP36 WILD-TYPE      9     21     16
D48V8, multiclass
        clus
vv       ZFP36 MUTATED ZFP36 WILD-TYPE
  CLUS_1             0               9
  CLUS_2             1              21
  CLUS_3             3              16

Clustering(49) Variable = NR4A3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NR4A3 MUTATED        2      3      0
  NR4A3 WILD-TYPE     11     26     14
D49V1, multiclass
        clus
vv       NR4A3 MUTATED NR4A3 WILD-TYPE
  CLUS_1             2              11
  CLUS_2             3              26
  CLUS_3             0              14
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NR4A3 MUTATED        2      0      3
  NR4A3 WILD-TYPE     16     24     11
D49V2, multiclass
        clus
vv       NR4A3 MUTATED NR4A3 WILD-TYPE
  CLUS_1             2              16
  CLUS_2             0              24
  CLUS_3             3              11
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NR4A3 MUTATED        3      1      1      0
  NR4A3 WILD-TYPE     15     11      8      8
D49V3, multiclass
        clus
vv       NR4A3 MUTATED NR4A3 WILD-TYPE
  CLUS_1             3              15
  CLUS_2             1              11
  CLUS_3             1               8
  CLUS_4             0               8
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NR4A3 MUTATED        0      3      2
  NR4A3 WILD-TYPE      4     15     23
D49V4, multiclass
        clus
vv       NR4A3 MUTATED NR4A3 WILD-TYPE
  CLUS_1             0               4
  CLUS_2             3              15
  CLUS_3             2              23
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NR4A3 MUTATED        3      1      1
  NR4A3 WILD-TYPE     22     10     13
D49V5, multiclass
        clus
vv       NR4A3 MUTATED NR4A3 WILD-TYPE
  CLUS_1             3              22
  CLUS_2             1              10
  CLUS_3             1              13
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NR4A3 MUTATED        0      2      3
  NR4A3 WILD-TYPE      8     17     20
D49V6, multiclass
        clus
vv       NR4A3 MUTATED NR4A3 WILD-TYPE
  CLUS_1             0               8
  CLUS_2             2              17
  CLUS_3             3              20
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NR4A3 MUTATED        2      1      2
  NR4A3 WILD-TYPE     19      8     18
D49V7, multiclass
        clus
vv       NR4A3 MUTATED NR4A3 WILD-TYPE
  CLUS_1             2              19
  CLUS_2             1               8
  CLUS_3             2              18
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NR4A3 MUTATED        1      2      2
  NR4A3 WILD-TYPE      8     20     17
D49V8, multiclass
        clus
vv       NR4A3 MUTATED NR4A3 WILD-TYPE
  CLUS_1             1               8
  CLUS_2             2              20
  CLUS_3             2              17

Clustering(50) Variable = RAB11FIP5 MUTATION ANALYSIS
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  RAB11FIP5 MUTATED        0      3      2
  RAB11FIP5 WILD-TYPE     13     26     12
D50V1, multiclass
        clus
vv       RAB11FIP5 MUTATED RAB11FIP5 WILD-TYPE
  CLUS_1                 0                  13
  CLUS_2                 3                  26
  CLUS_3                 2                  12
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  RAB11FIP5 MUTATED        0      3      2
  RAB11FIP5 WILD-TYPE     18     21     12
D50V2, multiclass
        clus
vv       RAB11FIP5 MUTATED RAB11FIP5 WILD-TYPE
  CLUS_1                 0                  18
  CLUS_2                 3                  21
  CLUS_3                 2                  12
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAB11FIP5 MUTATED        1      1      2      0
  RAB11FIP5 WILD-TYPE     17     11      7      8
D50V3, multiclass
        clus
vv       RAB11FIP5 MUTATED RAB11FIP5 WILD-TYPE
  CLUS_1                 1                  17
  CLUS_2                 1                  11
  CLUS_3                 2                   7
  CLUS_4                 0                   8
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  RAB11FIP5 MUTATED        0      1      3
  RAB11FIP5 WILD-TYPE      4     17     22
D50V4, multiclass
        clus
vv       RAB11FIP5 MUTATED RAB11FIP5 WILD-TYPE
  CLUS_1                 0                   4
  CLUS_2                 1                  17
  CLUS_3                 3                  22
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  RAB11FIP5 MUTATED        2      1      2
  RAB11FIP5 WILD-TYPE     23     10     12
D50V5, multiclass
        clus
vv       RAB11FIP5 MUTATED RAB11FIP5 WILD-TYPE
  CLUS_1                 2                  23
  CLUS_2                 1                  10
  CLUS_3                 2                  12
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  RAB11FIP5 MUTATED        1      2      2
  RAB11FIP5 WILD-TYPE      7     17     21
D50V6, multiclass
        clus
vv       RAB11FIP5 MUTATED RAB11FIP5 WILD-TYPE
  CLUS_1                 1                   7
  CLUS_2                 2                  17
  CLUS_3                 2                  21
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  RAB11FIP5 MUTATED        2      0      3
  RAB11FIP5 WILD-TYPE     19      9     17
D50V7, multiclass
        clus
vv       RAB11FIP5 MUTATED RAB11FIP5 WILD-TYPE
  CLUS_1                 2                  19
  CLUS_2                 0                   9
  CLUS_3                 3                  17
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  RAB11FIP5 MUTATED        1      2      2
  RAB11FIP5 WILD-TYPE      8     20     17
D50V8, multiclass
        clus
vv       RAB11FIP5 MUTATED RAB11FIP5 WILD-TYPE
  CLUS_1                 1                   8
  CLUS_2                 2                  20
  CLUS_3                 2                  17

Clustering(51) Variable = OTUD4 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OTUD4 MUTATED        3      4      0
  OTUD4 WILD-TYPE     10     25     14
D51V1, multiclass
        clus
vv       OTUD4 MUTATED OTUD4 WILD-TYPE
  CLUS_1             3              10
  CLUS_2             4              25
  CLUS_3             0              14
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OTUD4 MUTATED        2      3      2
  OTUD4 WILD-TYPE     16     21     12
D51V2, multiclass
        clus
vv       OTUD4 MUTATED OTUD4 WILD-TYPE
  CLUS_1             2              16
  CLUS_2             3              21
  CLUS_3             2              12
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OTUD4 MUTATED        3      1      3      0
  OTUD4 WILD-TYPE     15     11      6      8
D51V3, multiclass
        clus
vv       OTUD4 MUTATED OTUD4 WILD-TYPE
  CLUS_1             3              15
  CLUS_2             1              11
  CLUS_3             3               6
  CLUS_4             0               8
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OTUD4 MUTATED        0      3      4
  OTUD4 WILD-TYPE      4     15     21
D51V4, multiclass
        clus
vv       OTUD4 MUTATED OTUD4 WILD-TYPE
  CLUS_1             0               4
  CLUS_2             3              15
  CLUS_3             4              21
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OTUD4 MUTATED        3      1      3
  OTUD4 WILD-TYPE     22     10     11
D51V5, multiclass
        clus
vv       OTUD4 MUTATED OTUD4 WILD-TYPE
  CLUS_1             3              22
  CLUS_2             1              10
  CLUS_3             3              11
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OTUD4 MUTATED        1      3      3
  OTUD4 WILD-TYPE      7     16     20
D51V6, multiclass
        clus
vv       OTUD4 MUTATED OTUD4 WILD-TYPE
  CLUS_1             1               7
  CLUS_2             3              16
  CLUS_3             3              20
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OTUD4 MUTATED        2      1      4
  OTUD4 WILD-TYPE     19      8     16
D51V7, multiclass
        clus
vv       OTUD4 MUTATED OTUD4 WILD-TYPE
  CLUS_1             2              19
  CLUS_2             1               8
  CLUS_3             4              16
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OTUD4 MUTATED        2      2      3
  OTUD4 WILD-TYPE      7     20     16
D51V8, multiclass
        clus
vv       OTUD4 MUTATED OTUD4 WILD-TYPE
  CLUS_1             2               7
  CLUS_2             2              20
  CLUS_3             3              16

Clustering(52) Variable = PPARGC1B MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  PPARGC1B MUTATED        1      4      1
  PPARGC1B WILD-TYPE     12     25     13
D52V1, multiclass
        clus
vv       PPARGC1B MUTATED PPARGC1B WILD-TYPE
  CLUS_1                1                 12
  CLUS_2                4                 25
  CLUS_3                1                 13
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  PPARGC1B MUTATED        1      4      2
  PPARGC1B WILD-TYPE     17     20     12
D52V2, multiclass
        clus
vv       PPARGC1B MUTATED PPARGC1B WILD-TYPE
  CLUS_1                1                 17
  CLUS_2                4                 20
  CLUS_3                2                 12
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PPARGC1B MUTATED        2      2      2      1
  PPARGC1B WILD-TYPE     16     10      7      7
D52V3, multiclass
        clus
vv       PPARGC1B MUTATED PPARGC1B WILD-TYPE
  CLUS_1                2                 16
  CLUS_2                2                 10
  CLUS_3                2                  7
  CLUS_4                1                  7
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  PPARGC1B MUTATED        1      2      4
  PPARGC1B WILD-TYPE      3     16     21
D52V4, multiclass
        clus
vv       PPARGC1B MUTATED PPARGC1B WILD-TYPE
  CLUS_1                1                  3
  CLUS_2                2                 16
  CLUS_3                4                 21
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  PPARGC1B MUTATED        3      2      2
  PPARGC1B WILD-TYPE     22      9     12
D52V5, multiclass
        clus
vv       PPARGC1B MUTATED PPARGC1B WILD-TYPE
  CLUS_1                3                 22
  CLUS_2                2                  9
  CLUS_3                2                 12
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  PPARGC1B MUTATED        0      4      3
  PPARGC1B WILD-TYPE      8     15     20
D52V6, multiclass
        clus
vv       PPARGC1B MUTATED PPARGC1B WILD-TYPE
  CLUS_1                0                  8
  CLUS_2                4                 15
  CLUS_3                3                 20
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  PPARGC1B MUTATED        1      3      3
  PPARGC1B WILD-TYPE     20      6     17
D52V7, multiclass
        clus
vv       PPARGC1B MUTATED PPARGC1B WILD-TYPE
  CLUS_1                1                 20
  CLUS_2                3                  6
  CLUS_3                3                 17
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  PPARGC1B MUTATED        1      2      4
  PPARGC1B WILD-TYPE      8     20     15
D52V8, multiclass
        clus
vv       PPARGC1B MUTATED PPARGC1B WILD-TYPE
  CLUS_1                1                  8
  CLUS_2                2                 20
  CLUS_3                4                 15

Clustering(53) Variable = PDZD2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PDZD2 MUTATED        2      6      1
  PDZD2 WILD-TYPE     11     23     13
D53V1, multiclass
        clus
vv       PDZD2 MUTATED PDZD2 WILD-TYPE
  CLUS_1             2              11
  CLUS_2             6              23
  CLUS_3             1              13
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PDZD2 MUTATED        2      3      4
  PDZD2 WILD-TYPE     16     21     10
D53V2, multiclass
        clus
vv       PDZD2 MUTATED PDZD2 WILD-TYPE
  CLUS_1             2              16
  CLUS_2             3              21
  CLUS_3             4              10
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PDZD2 MUTATED        2      3      3      1
  PDZD2 WILD-TYPE     16      9      6      7
D53V3, multiclass
        clus
vv       PDZD2 MUTATED PDZD2 WILD-TYPE
  CLUS_1             2              16
  CLUS_2             3               9
  CLUS_3             3               6
  CLUS_4             1               7
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PDZD2 MUTATED        1      2      6
  PDZD2 WILD-TYPE      3     16     19
D53V4, multiclass
        clus
vv       PDZD2 MUTATED PDZD2 WILD-TYPE
  CLUS_1             1               3
  CLUS_2             2              16
  CLUS_3             6              19
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PDZD2 MUTATED        3      3      3
  PDZD2 WILD-TYPE     22      8     11
D53V5, multiclass
        clus
vv       PDZD2 MUTATED PDZD2 WILD-TYPE
  CLUS_1             3              22
  CLUS_2             3               8
  CLUS_3             3              11
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PDZD2 MUTATED        1      6      2
  PDZD2 WILD-TYPE      7     13     21
D53V6, multiclass
        clus
vv       PDZD2 MUTATED PDZD2 WILD-TYPE
  CLUS_1             1               7
  CLUS_2             6              13
  CLUS_3             2              21
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PDZD2 MUTATED        1      3      5
  PDZD2 WILD-TYPE     20      6     15
D53V7, multiclass
        clus
vv       PDZD2 MUTATED PDZD2 WILD-TYPE
  CLUS_1             1              20
  CLUS_2             3               6
  CLUS_3             5              15
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PDZD2 MUTATED        2      1      6
  PDZD2 WILD-TYPE      7     21     13
D53V8, multiclass
        clus
vv       PDZD2 MUTATED PDZD2 WILD-TYPE
  CLUS_1             2               7
  CLUS_2             1              21
  CLUS_3             6              13

Clustering(54) Variable = NPNT MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NPNT MUTATED        2      2      0
  NPNT WILD-TYPE     11     27     14
D54V1, multiclass
        clus
vv       NPNT MUTATED NPNT WILD-TYPE
  CLUS_1            2             11
  CLUS_2            2             27
  CLUS_3            0             14
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NPNT MUTATED        1      2      1
  NPNT WILD-TYPE     17     22     13
D54V2, multiclass
        clus
vv       NPNT MUTATED NPNT WILD-TYPE
  CLUS_1            1             17
  CLUS_2            2             22
  CLUS_3            1             13
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NPNT MUTATED        2      0      1      1
  NPNT WILD-TYPE     16     12      8      7
D54V3, multiclass
        clus
vv       NPNT MUTATED NPNT WILD-TYPE
  CLUS_1            2             16
  CLUS_2            0             12
  CLUS_3            1              8
  CLUS_4            1              7
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NPNT MUTATED        0      1      3
  NPNT WILD-TYPE      4     17     22
D54V4, multiclass
        clus
vv       NPNT MUTATED NPNT WILD-TYPE
  CLUS_1            0              4
  CLUS_2            1             17
  CLUS_3            3             22
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NPNT MUTATED        2      0      2
  NPNT WILD-TYPE     23     11     12
D54V5, multiclass
        clus
vv       NPNT MUTATED NPNT WILD-TYPE
  CLUS_1            2             23
  CLUS_2            0             11
  CLUS_3            2             12
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NPNT MUTATED        1      1      2
  NPNT WILD-TYPE      7     18     21
D54V6, multiclass
        clus
vv       NPNT MUTATED NPNT WILD-TYPE
  CLUS_1            1              7
  CLUS_2            1             18
  CLUS_3            2             21
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NPNT MUTATED        2      0      2
  NPNT WILD-TYPE     19      9     18
D54V7, multiclass
        clus
vv       NPNT MUTATED NPNT WILD-TYPE
  CLUS_1            2             19
  CLUS_2            0              9
  CLUS_3            2             18
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NPNT MUTATED        1      2      1
  NPNT WILD-TYPE      8     20     18
D54V8, multiclass
        clus
vv       NPNT MUTATED NPNT WILD-TYPE
  CLUS_1            1              8
  CLUS_2            2             20
  CLUS_3            1             18

Clustering(55) Variable = MED9 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MED9 MUTATED        0      1      2
  MED9 WILD-TYPE     13     28     12
D55V1, multiclass
        clus
vv       MED9 MUTATED MED9 WILD-TYPE
  CLUS_1            0             13
  CLUS_2            1             28
  CLUS_3            2             12
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MED9 MUTATED        0      0      3
  MED9 WILD-TYPE     18     24     11
D55V2, multiclass
        clus
vv       MED9 MUTATED MED9 WILD-TYPE
  CLUS_1            0             18
  CLUS_2            0             24
  CLUS_3            3             11
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MED9 MUTATED        1      1      0      0
  MED9 WILD-TYPE     17     11      9      8
D55V3, multiclass
[1] "Remove cluster labels:" "MED9 MUTATED"          
clus
  MED9 MUTATED MED9 WILD-TYPE 
             2             45 
    TCGA-F2-6879     TCGA-F2-7273     TCGA-F2-7276     TCGA-F2-A44G 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6     TCGA-FB-A545 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-H6-A45N     TCGA-HV-A5A3     TCGA-HV-A5A4     TCGA-HV-A5A5 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-HV-A5A6     TCGA-HZ-7918     TCGA-HZ-7920     TCGA-HZ-7922 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-HZ-7923     TCGA-HZ-7924     TCGA-HZ-7925     TCGA-HZ-7926 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-HZ-8001     TCGA-HZ-8002     TCGA-HZ-8003     TCGA-HZ-8315 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-IB-7652     TCGA-IB-7654     TCGA-IB-7885     TCGA-IB-7886 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-IB-7887     TCGA-IB-7891     TCGA-IB-7893     TCGA-IB-7897 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-M8-A5N4 
"MED9 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MED9 MUTATED        0      1      1
  MED9 WILD-TYPE      4     17     24
D55V4, multiclass
[1] "Remove cluster labels:" "MED9 MUTATED"          
clus
  MED9 MUTATED MED9 WILD-TYPE 
             2             45 
    TCGA-F2-6879     TCGA-F2-7273     TCGA-F2-7276     TCGA-F2-A44G 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-F2-A44H     TCGA-FB-A4P5     TCGA-FB-A4P6     TCGA-FB-A545 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-H6-A45N     TCGA-HV-A5A3     TCGA-HV-A5A4     TCGA-HV-A5A5 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-HV-A5A6     TCGA-HZ-7918     TCGA-HZ-7920     TCGA-HZ-7922 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-HZ-7923     TCGA-HZ-7924     TCGA-HZ-7925     TCGA-HZ-7926 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-HZ-8001     TCGA-HZ-8002     TCGA-HZ-8003     TCGA-HZ-8315 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-HZ-8636     TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-HZ-A4BH     TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-IB-7646     TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-IB-7652     TCGA-IB-7654     TCGA-IB-7885     TCGA-IB-7886 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-IB-7887     TCGA-IB-7891     TCGA-IB-7893     TCGA-IB-7897 
"MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" "MED9 WILD-TYPE" 
    TCGA-M8-A5N4 
"MED9 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MED9 MUTATED        2      1      0
  MED9 WILD-TYPE     23     10     14
D55V5, multiclass
        clus
vv       MED9 MUTATED MED9 WILD-TYPE
  CLUS_1            2             23
  CLUS_2            1             10
  CLUS_3            0             14
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MED9 MUTATED        0      1      2
  MED9 WILD-TYPE      8     18     21
D55V6, multiclass
        clus
vv       MED9 MUTATED MED9 WILD-TYPE
  CLUS_1            0              8
  CLUS_2            1             18
  CLUS_3            2             21
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MED9 MUTATED        2      0      1
  MED9 WILD-TYPE     19      9     19
D55V7, multiclass
        clus
vv       MED9 MUTATED MED9 WILD-TYPE
  CLUS_1            2             19
  CLUS_2            0              9
  CLUS_3            1             19
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MED9 MUTATED        0      2      1
  MED9 WILD-TYPE      9     20     18
D55V8, multiclass
        clus
vv       MED9 MUTATED MED9 WILD-TYPE
  CLUS_1            0              9
  CLUS_2            2             20
  CLUS_3            1             18

Clustering(56) Variable = BCL2L1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  BCL2L1 MUTATED        1      2      0
  BCL2L1 WILD-TYPE     12     27     14
D56V1, multiclass
        clus
vv       BCL2L1 MUTATED BCL2L1 WILD-TYPE
  CLUS_1              1               12
  CLUS_2              2               27
  CLUS_3              0               14
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  BCL2L1 MUTATED        1      2      0
  BCL2L1 WILD-TYPE     17     22     14
D56V2, multiclass
        clus
vv       BCL2L1 MUTATED BCL2L1 WILD-TYPE
  CLUS_1              1               17
  CLUS_2              2               22
  CLUS_3              0               14
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BCL2L1 MUTATED        1      1      0      1
  BCL2L1 WILD-TYPE     17     11      9      7
D56V3, multiclass
        clus
vv       BCL2L1 MUTATED BCL2L1 WILD-TYPE
  CLUS_1              1               17
  CLUS_2              1               11
  CLUS_3              0                9
  CLUS_4              1                7
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  BCL2L1 MUTATED        1      1      1
  BCL2L1 WILD-TYPE      3     17     24
D56V4, multiclass
        clus
vv       BCL2L1 MUTATED BCL2L1 WILD-TYPE
  CLUS_1              1                3
  CLUS_2              1               17
  CLUS_3              1               24
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  BCL2L1 MUTATED        2      1      0
  BCL2L1 WILD-TYPE     23     10     14
D56V5, multiclass
        clus
vv       BCL2L1 MUTATED BCL2L1 WILD-TYPE
  CLUS_1              2               23
  CLUS_2              1               10
  CLUS_3              0               14
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  BCL2L1 MUTATED        0      1      2
  BCL2L1 WILD-TYPE      8     18     21
D56V6, multiclass
        clus
vv       BCL2L1 MUTATED BCL2L1 WILD-TYPE
  CLUS_1              0                8
  CLUS_2              1               18
  CLUS_3              2               21
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  BCL2L1 MUTATED        1      1      1
  BCL2L1 WILD-TYPE     20      8     19
D56V7, multiclass
        clus
vv       BCL2L1 MUTATED BCL2L1 WILD-TYPE
  CLUS_1              1               20
  CLUS_2              1                8
  CLUS_3              1               19
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  BCL2L1 MUTATED        0      2      1
  BCL2L1 WILD-TYPE      9     20     18
D56V8, multiclass
        clus
vv       BCL2L1 MUTATED BCL2L1 WILD-TYPE
  CLUS_1              0                9
  CLUS_2              2               20
  CLUS_3              1               18

Clustering(57) Variable = CPLX3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CPLX3 MUTATED        0      3      0
  CPLX3 WILD-TYPE     13     26     14
D57V1, multiclass
        clus
vv       CPLX3 MUTATED CPLX3 WILD-TYPE
  CLUS_1             0              13
  CLUS_2             3              26
  CLUS_3             0              14
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CPLX3 MUTATED        0      2      1
  CPLX3 WILD-TYPE     18     22     13
D57V2, multiclass
        clus
vv       CPLX3 MUTATED CPLX3 WILD-TYPE
  CLUS_1             0              18
  CLUS_2             2              22
  CLUS_3             1              13
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CPLX3 MUTATED        0      2      1      0
  CPLX3 WILD-TYPE     18     10      8      8
D57V3, multiclass
        clus
vv       CPLX3 MUTATED CPLX3 WILD-TYPE
  CLUS_1             0              18
  CLUS_2             2              10
  CLUS_3             1               8
  CLUS_4             0               8
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CPLX3 MUTATED        0      0      3
  CPLX3 WILD-TYPE      4     18     22
D57V4, multiclass
        clus
vv       CPLX3 MUTATED CPLX3 WILD-TYPE
  CLUS_1             0               4
  CLUS_2             0              18
  CLUS_3             3              22
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CPLX3 MUTATED        0      2      1
  CPLX3 WILD-TYPE     25      9     13
D57V5, multiclass
        clus
vv       CPLX3 MUTATED CPLX3 WILD-TYPE
  CLUS_1             0              25
  CLUS_2             2               9
  CLUS_3             1              13
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CPLX3 MUTATED        0      3      0
  CPLX3 WILD-TYPE      8     16     23
D57V6, multiclass
        clus
vv       CPLX3 MUTATED CPLX3 WILD-TYPE
  CLUS_1             0               8
  CLUS_2             3              16
  CLUS_3             0              23
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CPLX3 MUTATED        0      0      3
  CPLX3 WILD-TYPE     21      9     17
D57V7, multiclass
        clus
vv       CPLX3 MUTATED CPLX3 WILD-TYPE
  CLUS_1             0              21
  CLUS_2             0               9
  CLUS_3             3              17
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CPLX3 MUTATED        0      0      3
  CPLX3 WILD-TYPE      9     22     16
D57V8, multiclass
        clus
vv       CPLX3 MUTATED CPLX3 WILD-TYPE
  CLUS_1             0               9
  CLUS_2             0              22
  CLUS_3             3              16

Clustering(58) Variable = IRX4 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IRX4 MUTATED        1      2      0
  IRX4 WILD-TYPE     12     27     14
D58V1, multiclass
        clus
vv       IRX4 MUTATED IRX4 WILD-TYPE
  CLUS_1            1             12
  CLUS_2            2             27
  CLUS_3            0             14
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IRX4 MUTATED        1      2      0
  IRX4 WILD-TYPE     17     22     14
D58V2, multiclass
        clus
vv       IRX4 MUTATED IRX4 WILD-TYPE
  CLUS_1            1             17
  CLUS_2            2             22
  CLUS_3            0             14
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IRX4 MUTATED        1      0      2      0
  IRX4 WILD-TYPE     17     12      7      8
D58V3, multiclass
        clus
vv       IRX4 MUTATED IRX4 WILD-TYPE
  CLUS_1            1             17
  CLUS_2            0             12
  CLUS_3            2              7
  CLUS_4            0              8
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IRX4 MUTATED        0      1      2
  IRX4 WILD-TYPE      4     17     23
D58V4, multiclass
        clus
vv       IRX4 MUTATED IRX4 WILD-TYPE
  CLUS_1            0              4
  CLUS_2            1             17
  CLUS_3            2             23
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IRX4 MUTATED        1      0      2
  IRX4 WILD-TYPE     24     11     12
D58V5, multiclass
        clus
vv       IRX4 MUTATED IRX4 WILD-TYPE
  CLUS_1            1             24
  CLUS_2            0             11
  CLUS_3            2             12
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IRX4 MUTATED        1      1      1
  IRX4 WILD-TYPE      7     18     22
D58V6, multiclass
        clus
vv       IRX4 MUTATED IRX4 WILD-TYPE
  CLUS_1            1              7
  CLUS_2            1             18
  CLUS_3            1             22
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IRX4 MUTATED        1      0      2
  IRX4 WILD-TYPE     20      9     18
D58V7, multiclass
        clus
vv       IRX4 MUTATED IRX4 WILD-TYPE
  CLUS_1            1             20
  CLUS_2            0              9
  CLUS_3            2             18
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IRX4 MUTATED        1      1      1
  IRX4 WILD-TYPE      8     21     18
D58V8, multiclass
        clus
vv       IRX4 MUTATED IRX4 WILD-TYPE
  CLUS_1            1              8
  CLUS_2            1             21
  CLUS_3            1             18

Clustering(59) Variable = NFAT5 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NFAT5 MUTATED        2      5      1
  NFAT5 WILD-TYPE     11     24     13
D59V1, multiclass
        clus
vv       NFAT5 MUTATED NFAT5 WILD-TYPE
  CLUS_1             2              11
  CLUS_2             5              24
  CLUS_3             1              13
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NFAT5 MUTATED        1      4      3
  NFAT5 WILD-TYPE     17     20     11
D59V2, multiclass
        clus
vv       NFAT5 MUTATED NFAT5 WILD-TYPE
  CLUS_1             1              17
  CLUS_2             4              20
  CLUS_3             3              11
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NFAT5 MUTATED        3      1      3      1
  NFAT5 WILD-TYPE     15     11      6      7
D59V3, multiclass
        clus
vv       NFAT5 MUTATED NFAT5 WILD-TYPE
  CLUS_1             3              15
  CLUS_2             1              11
  CLUS_3             3               6
  CLUS_4             1               7
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NFAT5 MUTATED        1      3      4
  NFAT5 WILD-TYPE      3     15     21
D59V4, multiclass
        clus
vv       NFAT5 MUTATED NFAT5 WILD-TYPE
  CLUS_1             1               3
  CLUS_2             3              15
  CLUS_3             4              21
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NFAT5 MUTATED        4      1      3
  NFAT5 WILD-TYPE     21     10     11
D59V5, multiclass
        clus
vv       NFAT5 MUTATED NFAT5 WILD-TYPE
  CLUS_1             4              21
  CLUS_2             1              10
  CLUS_3             3              11
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NFAT5 MUTATED        0      4      4
  NFAT5 WILD-TYPE      8     15     19
D59V6, multiclass
        clus
vv       NFAT5 MUTATED NFAT5 WILD-TYPE
  CLUS_1             0               8
  CLUS_2             4              15
  CLUS_3             4              19
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NFAT5 MUTATED        3      1      4
  NFAT5 WILD-TYPE     18      8     16
D59V7, multiclass
        clus
vv       NFAT5 MUTATED NFAT5 WILD-TYPE
  CLUS_1             3              18
  CLUS_2             1               8
  CLUS_3             4              16
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NFAT5 MUTATED        1      3      4
  NFAT5 WILD-TYPE      8     19     15
D59V8, multiclass
        clus
vv       NFAT5 MUTATED NFAT5 WILD-TYPE
  CLUS_1             1               8
  CLUS_2             3              19
  CLUS_3             4              15

Clustering(60) Variable = WASF3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  WASF3 MUTATED        0      3      2
  WASF3 WILD-TYPE     13     26     12
D60V1, multiclass
        clus
vv       WASF3 MUTATED WASF3 WILD-TYPE
  CLUS_1             0              13
  CLUS_2             3              26
  CLUS_3             2              12
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  WASF3 MUTATED        0      3      2
  WASF3 WILD-TYPE     18     21     12
D60V2, multiclass
        clus
vv       WASF3 MUTATED WASF3 WILD-TYPE
  CLUS_1             0              18
  CLUS_2             3              21
  CLUS_3             2              12
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WASF3 MUTATED        1      0      1      2
  WASF3 WILD-TYPE     17     12      8      6
D60V3, multiclass
        clus
vv       WASF3 MUTATED WASF3 WILD-TYPE
  CLUS_1             1              17
  CLUS_2             0              12
  CLUS_3             1               8
  CLUS_4             2               6
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  WASF3 MUTATED        1      1      2
  WASF3 WILD-TYPE      3     17     23
D60V4, multiclass
        clus
vv       WASF3 MUTATED WASF3 WILD-TYPE
  CLUS_1             1               3
  CLUS_2             1              17
  CLUS_3             2              23
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  WASF3 MUTATED        3      0      2
  WASF3 WILD-TYPE     22     11     12
D60V5, multiclass
        clus
vv       WASF3 MUTATED WASF3 WILD-TYPE
  CLUS_1             3              22
  CLUS_2             0              11
  CLUS_3             2              12
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  WASF3 MUTATED        1      1      3
  WASF3 WILD-TYPE      7     18     20
D60V6, multiclass
        clus
vv       WASF3 MUTATED WASF3 WILD-TYPE
  CLUS_1             1               7
  CLUS_2             1              18
  CLUS_3             3              20
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  WASF3 MUTATED        2      1      2
  WASF3 WILD-TYPE     19      8     18
D60V7, multiclass
        clus
vv       WASF3 MUTATED WASF3 WILD-TYPE
  CLUS_1             2              19
  CLUS_2             1               8
  CLUS_3             2              18
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  WASF3 MUTATED        1      3      1
  WASF3 WILD-TYPE      8     19     18
D60V8, multiclass
        clus
vv       WASF3 MUTATED WASF3 WILD-TYPE
  CLUS_1             1               8
  CLUS_2             3              19
  CLUS_3             1              18

Clustering(61) Variable = ABCC2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ABCC2 MUTATED        1      5      0
  ABCC2 WILD-TYPE     12     24     14
D61V1, multiclass
        clus
vv       ABCC2 MUTATED ABCC2 WILD-TYPE
  CLUS_1             1              12
  CLUS_2             5              24
  CLUS_3             0              14
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ABCC2 MUTATED        0      4      2
  ABCC2 WILD-TYPE     18     20     12
D61V2, multiclass
        clus
vv       ABCC2 MUTATED ABCC2 WILD-TYPE
  CLUS_1             0              18
  CLUS_2             4              20
  CLUS_3             2              12
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ABCC2 MUTATED        2      1      3      0
  ABCC2 WILD-TYPE     16     11      6      8
D61V3, multiclass
        clus
vv       ABCC2 MUTATED ABCC2 WILD-TYPE
  CLUS_1             2              16
  CLUS_2             1              11
  CLUS_3             3               6
  CLUS_4             0               8
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ABCC2 MUTATED        0      1      5
  ABCC2 WILD-TYPE      4     17     20
D61V4, multiclass
        clus
vv       ABCC2 MUTATED ABCC2 WILD-TYPE
  CLUS_1             0               4
  CLUS_2             1              17
  CLUS_3             5              20
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ABCC2 MUTATED        2      1      3
  ABCC2 WILD-TYPE     23     10     11
D61V5, multiclass
        clus
vv       ABCC2 MUTATED ABCC2 WILD-TYPE
  CLUS_1             2              23
  CLUS_2             1              10
  CLUS_3             3              11
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ABCC2 MUTATED        2      3      1
  ABCC2 WILD-TYPE      6     16     22
D61V6, multiclass
        clus
vv       ABCC2 MUTATED ABCC2 WILD-TYPE
  CLUS_1             2               6
  CLUS_2             3              16
  CLUS_3             1              22
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ABCC2 MUTATED        1      1      4
  ABCC2 WILD-TYPE     20      8     16
D61V7, multiclass
        clus
vv       ABCC2 MUTATED ABCC2 WILD-TYPE
  CLUS_1             1              20
  CLUS_2             1               8
  CLUS_3             4              16
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ABCC2 MUTATED        2      1      3
  ABCC2 WILD-TYPE      7     21     16
D61V8, multiclass
        clus
vv       ABCC2 MUTATED ABCC2 WILD-TYPE
  CLUS_1             2               7
  CLUS_2             1              21
  CLUS_3             3              16

Clustering(62) Variable = ATP13A3 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ATP13A3 MUTATED        0      2      2
  ATP13A3 WILD-TYPE     13     27     12
D62V1, multiclass
        clus
vv       ATP13A3 MUTATED ATP13A3 WILD-TYPE
  CLUS_1               0                13
  CLUS_2               2                27
  CLUS_3               2                12
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ATP13A3 MUTATED        0      2      2
  ATP13A3 WILD-TYPE     18     22     12
D62V2, multiclass
        clus
vv       ATP13A3 MUTATED ATP13A3 WILD-TYPE
  CLUS_1               0                18
  CLUS_2               2                22
  CLUS_3               2                12
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATP13A3 MUTATED        1      1      1      0
  ATP13A3 WILD-TYPE     17     11      8      8
D62V3, multiclass
        clus
vv       ATP13A3 MUTATED ATP13A3 WILD-TYPE
  CLUS_1               1                17
  CLUS_2               1                11
  CLUS_3               1                 8
  CLUS_4               0                 8
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ATP13A3 MUTATED        0      1      2
  ATP13A3 WILD-TYPE      4     17     23
D62V4, multiclass
        clus
vv       ATP13A3 MUTATED ATP13A3 WILD-TYPE
  CLUS_1               0                 4
  CLUS_2               1                17
  CLUS_3               2                23
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ATP13A3 MUTATED        2      1      1
  ATP13A3 WILD-TYPE     23     10     13
D62V5, multiclass
        clus
vv       ATP13A3 MUTATED ATP13A3 WILD-TYPE
  CLUS_1               2                23
  CLUS_2               1                10
  CLUS_3               1                13
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ATP13A3 MUTATED        0      2      2
  ATP13A3 WILD-TYPE      8     17     21
D62V6, multiclass
        clus
vv       ATP13A3 MUTATED ATP13A3 WILD-TYPE
  CLUS_1               0                 8
  CLUS_2               2                17
  CLUS_3               2                21
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ATP13A3 MUTATED        2      1      1
  ATP13A3 WILD-TYPE     19      8     19
D62V7, multiclass
        clus
vv       ATP13A3 MUTATED ATP13A3 WILD-TYPE
  CLUS_1               2                19
  CLUS_2               1                 8
  CLUS_3               1                19
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ATP13A3 MUTATED        0      2      2
  ATP13A3 WILD-TYPE      9     20     17
D62V8, multiclass
        clus
vv       ATP13A3 MUTATED ATP13A3 WILD-TYPE
  CLUS_1               0                 9
  CLUS_2               2                20
  CLUS_3               2                17

Clustering(63) Variable = ARHGAP18 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  ARHGAP18 MUTATED        0      3      0
  ARHGAP18 WILD-TYPE     13     26     14
D63V1, multiclass
        clus
vv       ARHGAP18 MUTATED ARHGAP18 WILD-TYPE
  CLUS_1                0                 13
  CLUS_2                3                 26
  CLUS_3                0                 14
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  ARHGAP18 MUTATED        0      3      1
  ARHGAP18 WILD-TYPE     18     21     13
D63V2, multiclass
        clus
vv       ARHGAP18 MUTATED ARHGAP18 WILD-TYPE
  CLUS_1                0                 18
  CLUS_2                3                 21
  CLUS_3                1                 13
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARHGAP18 MUTATED        0      3      1      0
  ARHGAP18 WILD-TYPE     18      9      8      8
D63V3, multiclass
        clus
vv       ARHGAP18 MUTATED ARHGAP18 WILD-TYPE
  CLUS_1                0                 18
  CLUS_2                3                  9
  CLUS_3                1                  8
  CLUS_4                0                  8
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  ARHGAP18 MUTATED        0      0      4
  ARHGAP18 WILD-TYPE      4     18     21
D63V4, multiclass
        clus
vv       ARHGAP18 MUTATED ARHGAP18 WILD-TYPE
  CLUS_1                0                  4
  CLUS_2                0                 18
  CLUS_3                4                 21
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  ARHGAP18 MUTATED        0      2      2
  ARHGAP18 WILD-TYPE     25      9     12
D63V5, multiclass
        clus
vv       ARHGAP18 MUTATED ARHGAP18 WILD-TYPE
  CLUS_1                0                 25
  CLUS_2                2                  9
  CLUS_3                2                 12
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  ARHGAP18 MUTATED        0      3      1
  ARHGAP18 WILD-TYPE      8     16     22
D63V6, multiclass
        clus
vv       ARHGAP18 MUTATED ARHGAP18 WILD-TYPE
  CLUS_1                0                  8
  CLUS_2                3                 16
  CLUS_3                1                 22
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  ARHGAP18 MUTATED        0      1      3
  ARHGAP18 WILD-TYPE     21      8     17
D63V7, multiclass
        clus
vv       ARHGAP18 MUTATED ARHGAP18 WILD-TYPE
  CLUS_1                0                 21
  CLUS_2                1                  8
  CLUS_3                3                 17
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  ARHGAP18 MUTATED        1      0      3
  ARHGAP18 WILD-TYPE      8     22     16
D63V8, multiclass
        clus
vv       ARHGAP18 MUTATED ARHGAP18 WILD-TYPE
  CLUS_1                1                  8
  CLUS_2                0                 22
  CLUS_3                3                 16

Clustering(64) Variable = CIR1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CIR1 MUTATED        0      2      1
  CIR1 WILD-TYPE     13     27     13
D64V1, multiclass
        clus
vv       CIR1 MUTATED CIR1 WILD-TYPE
  CLUS_1            0             13
  CLUS_2            2             27
  CLUS_3            1             13
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CIR1 MUTATED        0      2      1
  CIR1 WILD-TYPE     18     22     13
D64V2, multiclass
        clus
vv       CIR1 MUTATED CIR1 WILD-TYPE
  CLUS_1            0             18
  CLUS_2            2             22
  CLUS_3            1             13
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CIR1 MUTATED        0      2      0      0
  CIR1 WILD-TYPE     18     10      9      8
D64V3, multiclass
[1] "Remove cluster labels:" "CIR1 MUTATED"          
clus
  CIR1 MUTATED CIR1 WILD-TYPE 
             2             45 
    TCGA-F2-6879     TCGA-F2-7273     TCGA-F2-7276     TCGA-F2-A44G 
"CIR1 WILD-TYPE" "CIR1 WILD-TYPE" "CIR1 WILD-TYPE" "CIR1 WILD-TYPE" 
    TCGA-FB-A4P5     TCGA-FB-A4P6     TCGA-FB-A545     TCGA-H6-A45N 
"CIR1 WILD-TYPE" "CIR1 WILD-TYPE" "CIR1 WILD-TYPE" "CIR1 WILD-TYPE" 
    TCGA-HV-A5A3     TCGA-HV-A5A4     TCGA-HV-A5A5     TCGA-HV-A5A6 
"CIR1 WILD-TYPE" "CIR1 WILD-TYPE" "CIR1 WILD-TYPE" "CIR1 WILD-TYPE" 
    TCGA-HZ-7918     TCGA-HZ-7920     TCGA-HZ-7922     TCGA-HZ-7923 
"CIR1 WILD-TYPE" "CIR1 WILD-TYPE" "CIR1 WILD-TYPE" "CIR1 WILD-TYPE" 
    TCGA-HZ-7924     TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001 
"CIR1 WILD-TYPE" "CIR1 WILD-TYPE" "CIR1 WILD-TYPE" "CIR1 WILD-TYPE" 
    TCGA-HZ-8002     TCGA-HZ-8003     TCGA-HZ-8315     TCGA-HZ-8636 
"CIR1 WILD-TYPE" "CIR1 WILD-TYPE" "CIR1 WILD-TYPE" "CIR1 WILD-TYPE" 
    TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H     TCGA-HZ-A4BH 
"CIR1 WILD-TYPE" "CIR1 WILD-TYPE" "CIR1 WILD-TYPE" "CIR1 WILD-TYPE" 
    TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645     TCGA-IB-7646 
"CIR1 WILD-TYPE" "CIR1 WILD-TYPE" "CIR1 WILD-TYPE" "CIR1 WILD-TYPE" 
    TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651     TCGA-IB-7652 
"CIR1 WILD-TYPE" "CIR1 WILD-TYPE" "CIR1 WILD-TYPE" "CIR1 WILD-TYPE" 
    TCGA-IB-7654     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"CIR1 WILD-TYPE" "CIR1 WILD-TYPE" "CIR1 WILD-TYPE" "CIR1 WILD-TYPE" 
    TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7893     TCGA-IB-7897 
"CIR1 WILD-TYPE" "CIR1 WILD-TYPE" "CIR1 WILD-TYPE" "CIR1 WILD-TYPE" 
    TCGA-M8-A5N4 
"CIR1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CIR1 MUTATED        0      0      2
  CIR1 WILD-TYPE      4     18     23
D64V4, multiclass
[1] "Remove cluster labels:" "CIR1 MUTATED"          
clus
  CIR1 MUTATED CIR1 WILD-TYPE 
             2             45 
    TCGA-F2-6879     TCGA-F2-7273     TCGA-F2-7276     TCGA-F2-A44G 
"CIR1 WILD-TYPE" "CIR1 WILD-TYPE" "CIR1 WILD-TYPE" "CIR1 WILD-TYPE" 
    TCGA-FB-A4P5     TCGA-FB-A4P6     TCGA-FB-A545     TCGA-H6-A45N 
"CIR1 WILD-TYPE" "CIR1 WILD-TYPE" "CIR1 WILD-TYPE" "CIR1 WILD-TYPE" 
    TCGA-HV-A5A3     TCGA-HV-A5A4     TCGA-HV-A5A5     TCGA-HV-A5A6 
"CIR1 WILD-TYPE" "CIR1 WILD-TYPE" "CIR1 WILD-TYPE" "CIR1 WILD-TYPE" 
    TCGA-HZ-7918     TCGA-HZ-7920     TCGA-HZ-7922     TCGA-HZ-7923 
"CIR1 WILD-TYPE" "CIR1 WILD-TYPE" "CIR1 WILD-TYPE" "CIR1 WILD-TYPE" 
    TCGA-HZ-7924     TCGA-HZ-7925     TCGA-HZ-7926     TCGA-HZ-8001 
"CIR1 WILD-TYPE" "CIR1 WILD-TYPE" "CIR1 WILD-TYPE" "CIR1 WILD-TYPE" 
    TCGA-HZ-8002     TCGA-HZ-8003     TCGA-HZ-8315     TCGA-HZ-8636 
"CIR1 WILD-TYPE" "CIR1 WILD-TYPE" "CIR1 WILD-TYPE" "CIR1 WILD-TYPE" 
    TCGA-HZ-8638     TCGA-HZ-A49G     TCGA-HZ-A49H     TCGA-HZ-A4BH 
"CIR1 WILD-TYPE" "CIR1 WILD-TYPE" "CIR1 WILD-TYPE" "CIR1 WILD-TYPE" 
    TCGA-HZ-A4BK     TCGA-IB-7644     TCGA-IB-7645     TCGA-IB-7646 
"CIR1 WILD-TYPE" "CIR1 WILD-TYPE" "CIR1 WILD-TYPE" "CIR1 WILD-TYPE" 
    TCGA-IB-7647     TCGA-IB-7649     TCGA-IB-7651     TCGA-IB-7652 
"CIR1 WILD-TYPE" "CIR1 WILD-TYPE" "CIR1 WILD-TYPE" "CIR1 WILD-TYPE" 
    TCGA-IB-7654     TCGA-IB-7885     TCGA-IB-7886     TCGA-IB-7887 
"CIR1 WILD-TYPE" "CIR1 WILD-TYPE" "CIR1 WILD-TYPE" "CIR1 WILD-TYPE" 
    TCGA-IB-7889     TCGA-IB-7890     TCGA-IB-7893     TCGA-IB-7897 
"CIR1 WILD-TYPE" "CIR1 WILD-TYPE" "CIR1 WILD-TYPE" "CIR1 WILD-TYPE" 
    TCGA-M8-A5N4 
"CIR1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CIR1 MUTATED        1      2      0
  CIR1 WILD-TYPE     24      9     14
D64V5, multiclass
        clus
vv       CIR1 MUTATED CIR1 WILD-TYPE
  CLUS_1            1             24
  CLUS_2            2              9
  CLUS_3            0             14
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CIR1 MUTATED        0      2      1
  CIR1 WILD-TYPE      8     17     22
D64V6, multiclass
        clus
vv       CIR1 MUTATED CIR1 WILD-TYPE
  CLUS_1            0              8
  CLUS_2            2             17
  CLUS_3            1             22
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CIR1 MUTATED        1      1      1
  CIR1 WILD-TYPE     20      8     19
D64V7, multiclass
        clus
vv       CIR1 MUTATED CIR1 WILD-TYPE
  CLUS_1            1             20
  CLUS_2            1              8
  CLUS_3            1             19
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CIR1 MUTATED        0      1      2
  CIR1 WILD-TYPE      9     21     17
D64V8, multiclass
        clus
vv       CIR1 MUTATED CIR1 WILD-TYPE
  CLUS_1            0              9
  CLUS_2            1             21
  CLUS_3            2             17

Clustering(65) Variable = KIAA0020 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA0020 MUTATED        0      3      1
  KIAA0020 WILD-TYPE     13     26     13
D65V1, multiclass
        clus
vv       KIAA0020 MUTATED KIAA0020 WILD-TYPE
  CLUS_1                0                 13
  CLUS_2                3                 26
  CLUS_3                1                 13
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA0020 MUTATED        0      2      2
  KIAA0020 WILD-TYPE     18     22     12
D65V2, multiclass
        clus
vv       KIAA0020 MUTATED KIAA0020 WILD-TYPE
  CLUS_1                0                 18
  CLUS_2                2                 22
  CLUS_3                2                 12
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA0020 MUTATED        0      1      2      0
  KIAA0020 WILD-TYPE     18     11      7      8
D65V3, multiclass
        clus
vv       KIAA0020 MUTATED KIAA0020 WILD-TYPE
  CLUS_1                0                 18
  CLUS_2                1                 11
  CLUS_3                2                  7
  CLUS_4                0                  8
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA0020 MUTATED        0      0      3
  KIAA0020 WILD-TYPE      4     18     22
D65V4, multiclass
        clus
vv       KIAA0020 MUTATED KIAA0020 WILD-TYPE
  CLUS_1                0                  4
  CLUS_2                0                 18
  CLUS_3                3                 22
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA0020 MUTATED        1      1      2
  KIAA0020 WILD-TYPE     24     10     12
D65V5, multiclass
        clus
vv       KIAA0020 MUTATED KIAA0020 WILD-TYPE
  CLUS_1                1                 24
  CLUS_2                1                 10
  CLUS_3                2                 12
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA0020 MUTATED        0      2      2
  KIAA0020 WILD-TYPE      8     17     21
D65V6, multiclass
        clus
vv       KIAA0020 MUTATED KIAA0020 WILD-TYPE
  CLUS_1                0                  8
  CLUS_2                2                 17
  CLUS_3                2                 21
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA0020 MUTATED        1      0      3
  KIAA0020 WILD-TYPE     20      9     17
D65V7, multiclass
        clus
vv       KIAA0020 MUTATED KIAA0020 WILD-TYPE
  CLUS_1                1                 20
  CLUS_2                0                  9
  CLUS_3                3                 17
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA0020 MUTATED        1      1      2
  KIAA0020 WILD-TYPE      8     21     17
D65V8, multiclass
        clus
vv       KIAA0020 MUTATED KIAA0020 WILD-TYPE
  CLUS_1                1                  8
  CLUS_2                1                 21
  CLUS_3                2                 17

Clustering(66) Variable = ZNF608 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF608 MUTATED        0      6      0
  ZNF608 WILD-TYPE     13     23     14
D66V1, multiclass
        clus
vv       ZNF608 MUTATED ZNF608 WILD-TYPE
  CLUS_1              0               13
  CLUS_2              6               23
  CLUS_3              0               14
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF608 MUTATED        0      3      3
  ZNF608 WILD-TYPE     18     21     11
D66V2, multiclass
        clus
vv       ZNF608 MUTATED ZNF608 WILD-TYPE
  CLUS_1              0               18
  CLUS_2              3               21
  CLUS_3              3               11
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF608 MUTATED        1      2      2      1
  ZNF608 WILD-TYPE     17     10      7      7
D66V3, multiclass
        clus
vv       ZNF608 MUTATED ZNF608 WILD-TYPE
  CLUS_1              1               17
  CLUS_2              2               10
  CLUS_3              2                7
  CLUS_4              1                7
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF608 MUTATED        0      1      5
  ZNF608 WILD-TYPE      4     17     20
D66V4, multiclass
        clus
vv       ZNF608 MUTATED ZNF608 WILD-TYPE
  CLUS_1              0                4
  CLUS_2              1               17
  CLUS_3              5               20
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF608 MUTATED        1      2      3
  ZNF608 WILD-TYPE     24      9     11
D66V5, multiclass
        clus
vv       ZNF608 MUTATED ZNF608 WILD-TYPE
  CLUS_1              1               24
  CLUS_2              2                9
  CLUS_3              3               11
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF608 MUTATED        2      3      1
  ZNF608 WILD-TYPE      6     16     22
D66V6, multiclass
        clus
vv       ZNF608 MUTATED ZNF608 WILD-TYPE
  CLUS_1              2                6
  CLUS_2              3               16
  CLUS_3              1               22
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF608 MUTATED        0      2      4
  ZNF608 WILD-TYPE     21      7     16
D66V7, multiclass
        clus
vv       ZNF608 MUTATED ZNF608 WILD-TYPE
  CLUS_1              0               21
  CLUS_2              2                7
  CLUS_3              4               16
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF608 MUTATED        3      0      3
  ZNF608 WILD-TYPE      6     22     16
D66V8, multiclass
        clus
vv       ZNF608 MUTATED ZNF608 WILD-TYPE
  CLUS_1              3                6
  CLUS_2              0               22
  CLUS_3              3               16

Clustering(67) Variable = NEDD4L MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NEDD4L MUTATED        1      4      1
  NEDD4L WILD-TYPE     12     25     13
D67V1, multiclass
        clus
vv       NEDD4L MUTATED NEDD4L WILD-TYPE
  CLUS_1              1               12
  CLUS_2              4               25
  CLUS_3              1               13
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NEDD4L MUTATED        1      2      3
  NEDD4L WILD-TYPE     17     22     11
D67V2, multiclass
        clus
vv       NEDD4L MUTATED NEDD4L WILD-TYPE
  CLUS_1              1               17
  CLUS_2              2               22
  CLUS_3              3               11
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NEDD4L MUTATED        3      2      1      0
  NEDD4L WILD-TYPE     15     10      8      8
D67V3, multiclass
        clus
vv       NEDD4L MUTATED NEDD4L WILD-TYPE
  CLUS_1              3               15
  CLUS_2              2               10
  CLUS_3              1                8
  CLUS_4              0                8
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NEDD4L MUTATED        0      3      3
  NEDD4L WILD-TYPE      4     15     22
D67V4, multiclass
        clus
vv       NEDD4L MUTATED NEDD4L WILD-TYPE
  CLUS_1              0                4
  CLUS_2              3               15
  CLUS_3              3               22
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NEDD4L MUTATED        3      2      1
  NEDD4L WILD-TYPE     22      9     13
D67V5, multiclass
        clus
vv       NEDD4L MUTATED NEDD4L WILD-TYPE
  CLUS_1              3               22
  CLUS_2              2                9
  CLUS_3              1               13
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NEDD4L MUTATED        0      4      2
  NEDD4L WILD-TYPE      8     15     21
D67V6, multiclass
        clus
vv       NEDD4L MUTATED NEDD4L WILD-TYPE
  CLUS_1              0                8
  CLUS_2              4               15
  CLUS_3              2               21
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NEDD4L MUTATED        2      1      3
  NEDD4L WILD-TYPE     19      8     17
D67V7, multiclass
        clus
vv       NEDD4L MUTATED NEDD4L WILD-TYPE
  CLUS_1              2               19
  CLUS_2              1                8
  CLUS_3              3               17
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NEDD4L MUTATED        0      2      4
  NEDD4L WILD-TYPE      9     20     15
D67V8, multiclass
        clus
vv       NEDD4L MUTATED NEDD4L WILD-TYPE
  CLUS_1              0                9
  CLUS_2              2               20
  CLUS_3              4               15

Clustering(68) Variable = THBS4 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  THBS4 MUTATED        0      5      1
  THBS4 WILD-TYPE     13     24     13
D68V1, multiclass
        clus
vv       THBS4 MUTATED THBS4 WILD-TYPE
  CLUS_1             0              13
  CLUS_2             5              24
  CLUS_3             1              13
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  THBS4 MUTATED        0      3      3
  THBS4 WILD-TYPE     18     21     11
D68V2, multiclass
        clus
vv       THBS4 MUTATED THBS4 WILD-TYPE
  CLUS_1             0              18
  CLUS_2             3              21
  CLUS_3             3              11
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  THBS4 MUTATED        1      1      3      0
  THBS4 WILD-TYPE     17     11      6      8
D68V3, multiclass
        clus
vv       THBS4 MUTATED THBS4 WILD-TYPE
  CLUS_1             1              17
  CLUS_2             1              11
  CLUS_3             3               6
  CLUS_4             0               8
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  THBS4 MUTATED        0      1      4
  THBS4 WILD-TYPE      4     17     21
D68V4, multiclass
        clus
vv       THBS4 MUTATED THBS4 WILD-TYPE
  CLUS_1             0               4
  CLUS_2             1              17
  CLUS_3             4              21
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  THBS4 MUTATED        2      1      3
  THBS4 WILD-TYPE     23     10     11
D68V5, multiclass
        clus
vv       THBS4 MUTATED THBS4 WILD-TYPE
  CLUS_1             2              23
  CLUS_2             1              10
  CLUS_3             3              11
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  THBS4 MUTATED        1      3      2
  THBS4 WILD-TYPE      7     16     21
D68V6, multiclass
        clus
vv       THBS4 MUTATED THBS4 WILD-TYPE
  CLUS_1             1               7
  CLUS_2             3              16
  CLUS_3             2              21
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  THBS4 MUTATED        1      2      3
  THBS4 WILD-TYPE     20      7     17
D68V7, multiclass
        clus
vv       THBS4 MUTATED THBS4 WILD-TYPE
  CLUS_1             1              20
  CLUS_2             2               7
  CLUS_3             3              17
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  THBS4 MUTATED        2      1      3
  THBS4 WILD-TYPE      7     21     16
D68V8, multiclass
        clus
vv       THBS4 MUTATED THBS4 WILD-TYPE
  CLUS_1             2               7
  CLUS_2             1              21
  CLUS_3             3              16

Clustering(69) Variable = MMRN1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MMRN1 MUTATED        1      4      1
  MMRN1 WILD-TYPE     12     25     13
D69V1, multiclass
        clus
vv       MMRN1 MUTATED MMRN1 WILD-TYPE
  CLUS_1             1              12
  CLUS_2             4              25
  CLUS_3             1              13
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MMRN1 MUTATED        1      3      2
  MMRN1 WILD-TYPE     17     21     12
D69V2, multiclass
        clus
vv       MMRN1 MUTATED MMRN1 WILD-TYPE
  CLUS_1             1              17
  CLUS_2             3              21
  CLUS_3             2              12
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MMRN1 MUTATED        2      2      1      0
  MMRN1 WILD-TYPE     16     10      8      8
D69V3, multiclass
        clus
vv       MMRN1 MUTATED MMRN1 WILD-TYPE
  CLUS_1             2              16
  CLUS_2             2              10
  CLUS_3             1               8
  CLUS_4             0               8
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MMRN1 MUTATED        0      2      3
  MMRN1 WILD-TYPE      4     16     22
D69V4, multiclass
        clus
vv       MMRN1 MUTATED MMRN1 WILD-TYPE
  CLUS_1             0               4
  CLUS_2             2              16
  CLUS_3             3              22
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MMRN1 MUTATED        3      2      1
  MMRN1 WILD-TYPE     22      9     13
D69V5, multiclass
        clus
vv       MMRN1 MUTATED MMRN1 WILD-TYPE
  CLUS_1             3              22
  CLUS_2             2               9
  CLUS_3             1              13
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MMRN1 MUTATED        1      3      2
  MMRN1 WILD-TYPE      7     16     21
D69V6, multiclass
        clus
vv       MMRN1 MUTATED MMRN1 WILD-TYPE
  CLUS_1             1               7
  CLUS_2             3              16
  CLUS_3             2              21
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MMRN1 MUTATED        2      2      2
  MMRN1 WILD-TYPE     19      7     18
D69V7, multiclass
        clus
vv       MMRN1 MUTATED MMRN1 WILD-TYPE
  CLUS_1             2              19
  CLUS_2             2               7
  CLUS_3             2              18
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MMRN1 MUTATED        1      2      3
  MMRN1 WILD-TYPE      8     20     16
D69V8, multiclass
        clus
vv       MMRN1 MUTATED MMRN1 WILD-TYPE
  CLUS_1             1               8
  CLUS_2             2              20
  CLUS_3             3              16

Clustering(70) Variable = GPR25 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GPR25 MUTATED        0      3      0
  GPR25 WILD-TYPE     13     26     14
D70V1, multiclass
        clus
vv       GPR25 MUTATED GPR25 WILD-TYPE
  CLUS_1             0              13
  CLUS_2             3              26
  CLUS_3             0              14
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GPR25 MUTATED        0      2      1
  GPR25 WILD-TYPE     18     22     13
D70V2, multiclass
        clus
vv       GPR25 MUTATED GPR25 WILD-TYPE
  CLUS_1             0              18
  CLUS_2             2              22
  CLUS_3             1              13
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR25 MUTATED        1      1      1      0
  GPR25 WILD-TYPE     17     11      8      8
D70V3, multiclass
        clus
vv       GPR25 MUTATED GPR25 WILD-TYPE
  CLUS_1             1              17
  CLUS_2             1              11
  CLUS_3             1               8
  CLUS_4             0               8
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GPR25 MUTATED        0      1      2
  GPR25 WILD-TYPE      4     17     23
D70V4, multiclass
        clus
vv       GPR25 MUTATED GPR25 WILD-TYPE
  CLUS_1             0               4
  CLUS_2             1              17
  CLUS_3             2              23
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GPR25 MUTATED        1      1      1
  GPR25 WILD-TYPE     24     10     13
D70V5, multiclass
        clus
vv       GPR25 MUTATED GPR25 WILD-TYPE
  CLUS_1             1              24
  CLUS_2             1              10
  CLUS_3             1              13
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GPR25 MUTATED        0      3      0
  GPR25 WILD-TYPE      8     16     23
D70V6, multiclass
        clus
vv       GPR25 MUTATED GPR25 WILD-TYPE
  CLUS_1             0               8
  CLUS_2             3              16
  CLUS_3             0              23
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GPR25 MUTATED        0      1      2
  GPR25 WILD-TYPE     21      8     18
D70V7, multiclass
        clus
vv       GPR25 MUTATED GPR25 WILD-TYPE
  CLUS_1             0              21
  CLUS_2             1               8
  CLUS_3             2              18
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GPR25 MUTATED        0      0      3
  GPR25 WILD-TYPE      9     22     16
D70V8, multiclass
        clus
vv       GPR25 MUTATED GPR25 WILD-TYPE
  CLUS_1             0               9
  CLUS_2             0              22
  CLUS_3             3              16

Clustering(71) Variable = SORBS2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SORBS2 MUTATED        0      4      2
  SORBS2 WILD-TYPE     13     25     12
D71V1, multiclass
        clus
vv       SORBS2 MUTATED SORBS2 WILD-TYPE
  CLUS_1              0               13
  CLUS_2              4               25
  CLUS_3              2               12
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SORBS2 MUTATED        0      2      4
  SORBS2 WILD-TYPE     18     22     10
D71V2, multiclass
        clus
vv       SORBS2 MUTATED SORBS2 WILD-TYPE
  CLUS_1              0               18
  CLUS_2              2               22
  CLUS_3              4               10
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SORBS2 MUTATED        2      1      1      0
  SORBS2 WILD-TYPE     16     11      8      8
D71V3, multiclass
        clus
vv       SORBS2 MUTATED SORBS2 WILD-TYPE
  CLUS_1              2               16
  CLUS_2              1               11
  CLUS_3              1                8
  CLUS_4              0                8
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SORBS2 MUTATED        0      2      2
  SORBS2 WILD-TYPE      4     16     23
D71V4, multiclass
        clus
vv       SORBS2 MUTATED SORBS2 WILD-TYPE
  CLUS_1              0                4
  CLUS_2              2               16
  CLUS_3              2               23
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SORBS2 MUTATED        3      1      1
  SORBS2 WILD-TYPE     22     10     13
D71V5, multiclass
        clus
vv       SORBS2 MUTATED SORBS2 WILD-TYPE
  CLUS_1              3               22
  CLUS_2              1               10
  CLUS_3              1               13
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SORBS2 MUTATED        1      2      2
  SORBS2 WILD-TYPE      7     17     21
D71V6, multiclass
        clus
vv       SORBS2 MUTATED SORBS2 WILD-TYPE
  CLUS_1              1                7
  CLUS_2              2               17
  CLUS_3              2               21
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SORBS2 MUTATED        2      1      2
  SORBS2 WILD-TYPE     19      8     18
D71V7, multiclass
        clus
vv       SORBS2 MUTATED SORBS2 WILD-TYPE
  CLUS_1              2               19
  CLUS_2              1                8
  CLUS_3              2               18
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SORBS2 MUTATED        1      2      2
  SORBS2 WILD-TYPE      8     20     17
D71V8, multiclass
        clus
vv       SORBS2 MUTATED SORBS2 WILD-TYPE
  CLUS_1              1                8
  CLUS_2              2               20
  CLUS_3              2               17

Clustering(72) Variable = SULT1C3 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SULT1C3 MUTATED        1      1      1
  SULT1C3 WILD-TYPE     12     28     13
D72V1, multiclass
        clus
vv       SULT1C3 MUTATED SULT1C3 WILD-TYPE
  CLUS_1               1                12
  CLUS_2               1                28
  CLUS_3               1                13
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SULT1C3 MUTATED        1      0      2
  SULT1C3 WILD-TYPE     17     24     12
D72V2, multiclass
        clus
vv       SULT1C3 MUTATED SULT1C3 WILD-TYPE
  CLUS_1               1                17
  CLUS_2               0                24
  CLUS_3               2                12
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SULT1C3 MUTATED        2      1      0      0
  SULT1C3 WILD-TYPE     16     11      9      8
D72V3, multiclass
        clus
vv       SULT1C3 MUTATED SULT1C3 WILD-TYPE
  CLUS_1               2                16
  CLUS_2               1                11
  CLUS_3               0                 9
  CLUS_4               0                 8
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SULT1C3 MUTATED        0      2      1
  SULT1C3 WILD-TYPE      4     16     24
D72V4, multiclass
        clus
vv       SULT1C3 MUTATED SULT1C3 WILD-TYPE
  CLUS_1               0                 4
  CLUS_2               2                16
  CLUS_3               1                24
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SULT1C3 MUTATED        2      1      0
  SULT1C3 WILD-TYPE     23     10     14
D72V5, multiclass
        clus
vv       SULT1C3 MUTATED SULT1C3 WILD-TYPE
  CLUS_1               2                23
  CLUS_2               1                10
  CLUS_3               0                14
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SULT1C3 MUTATED        0      1      2
  SULT1C3 WILD-TYPE      8     18     21
D72V6, multiclass
        clus
vv       SULT1C3 MUTATED SULT1C3 WILD-TYPE
  CLUS_1               0                 8
  CLUS_2               1                18
  CLUS_3               2                21
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SULT1C3 MUTATED        2      0      1
  SULT1C3 WILD-TYPE     19      9     19
D72V7, multiclass
        clus
vv       SULT1C3 MUTATED SULT1C3 WILD-TYPE
  CLUS_1               2                19
  CLUS_2               0                 9
  CLUS_3               1                19
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SULT1C3 MUTATED        0      2      1
  SULT1C3 WILD-TYPE      9     20     18
D72V8, multiclass
        clus
vv       SULT1C3 MUTATED SULT1C3 WILD-TYPE
  CLUS_1               0                 9
  CLUS_2               2                20
  CLUS_3               1                18

Clustering(73) Variable = ECSIT MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ECSIT MUTATED        1      3      0
  ECSIT WILD-TYPE     12     26     14
D73V1, multiclass
        clus
vv       ECSIT MUTATED ECSIT WILD-TYPE
  CLUS_1             1              12
  CLUS_2             3              26
  CLUS_3             0              14
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ECSIT MUTATED        1      2      1
  ECSIT WILD-TYPE     17     22     13
D73V2, multiclass
        clus
vv       ECSIT MUTATED ECSIT WILD-TYPE
  CLUS_1             1              17
  CLUS_2             2              22
  CLUS_3             1              13
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ECSIT MUTATED        1      0      3      0
  ECSIT WILD-TYPE     17     12      6      8
D73V3, multiclass
        clus
vv       ECSIT MUTATED ECSIT WILD-TYPE
  CLUS_1             1              17
  CLUS_2             0              12
  CLUS_3             3               6
  CLUS_4             0               8
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ECSIT MUTATED        0      1      3
  ECSIT WILD-TYPE      4     17     22
D73V4, multiclass
        clus
vv       ECSIT MUTATED ECSIT WILD-TYPE
  CLUS_1             0               4
  CLUS_2             1              17
  CLUS_3             3              22
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ECSIT MUTATED        1      0      3
  ECSIT WILD-TYPE     24     11     11
D73V5, multiclass
        clus
vv       ECSIT MUTATED ECSIT WILD-TYPE
  CLUS_1             1              24
  CLUS_2             0              11
  CLUS_3             3              11
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ECSIT MUTATED        1      1      2
  ECSIT WILD-TYPE      7     18     21
D73V6, multiclass
        clus
vv       ECSIT MUTATED ECSIT WILD-TYPE
  CLUS_1             1               7
  CLUS_2             1              18
  CLUS_3             2              21
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ECSIT MUTATED        1      0      3
  ECSIT WILD-TYPE     20      9     17
D73V7, multiclass
        clus
vv       ECSIT MUTATED ECSIT WILD-TYPE
  CLUS_1             1              20
  CLUS_2             0               9
  CLUS_3             3              17
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ECSIT MUTATED        2      1      1
  ECSIT WILD-TYPE      7     21     18
D73V8, multiclass
        clus
vv       ECSIT MUTATED ECSIT WILD-TYPE
  CLUS_1             2               7
  CLUS_2             1              21
  CLUS_3             1              18

Clustering(74) Variable = ZNF326 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF326 MUTATED        0      3      1
  ZNF326 WILD-TYPE     13     26     13
D74V1, multiclass
        clus
vv       ZNF326 MUTATED ZNF326 WILD-TYPE
  CLUS_1              0               13
  CLUS_2              3               26
  CLUS_3              1               13
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF326 MUTATED        0      2      2
  ZNF326 WILD-TYPE     18     22     12
D74V2, multiclass
        clus
vv       ZNF326 MUTATED ZNF326 WILD-TYPE
  CLUS_1              0               18
  CLUS_2              2               22
  CLUS_3              2               12
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF326 MUTATED        1      0      2      0
  ZNF326 WILD-TYPE     17     12      7      8
D74V3, multiclass
        clus
vv       ZNF326 MUTATED ZNF326 WILD-TYPE
  CLUS_1              1               17
  CLUS_2              0               12
  CLUS_3              2                7
  CLUS_4              0                8
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF326 MUTATED        0      1      2
  ZNF326 WILD-TYPE      4     17     23
D74V4, multiclass
        clus
vv       ZNF326 MUTATED ZNF326 WILD-TYPE
  CLUS_1              0                4
  CLUS_2              1               17
  CLUS_3              2               23
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF326 MUTATED        2      0      2
  ZNF326 WILD-TYPE     23     11     12
D74V5, multiclass
        clus
vv       ZNF326 MUTATED ZNF326 WILD-TYPE
  CLUS_1              2               23
  CLUS_2              0               11
  CLUS_3              2               12
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF326 MUTATED        1      2      1
  ZNF326 WILD-TYPE      7     17     22
D74V6, multiclass
        clus
vv       ZNF326 MUTATED ZNF326 WILD-TYPE
  CLUS_1              1                7
  CLUS_2              2               17
  CLUS_3              1               22
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF326 MUTATED        1      1      2
  ZNF326 WILD-TYPE     20      8     18
D74V7, multiclass
        clus
vv       ZNF326 MUTATED ZNF326 WILD-TYPE
  CLUS_1              1               20
  CLUS_2              1                8
  CLUS_3              2               18
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF326 MUTATED        1      1      2
  ZNF326 WILD-TYPE      8     21     17
D74V8, multiclass
        clus
vv       ZNF326 MUTATED ZNF326 WILD-TYPE
  CLUS_1              1                8
  CLUS_2              1               21
  CLUS_3              2               17

Clustering(75) Variable = C15ORF52 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C15ORF52 MUTATED        0      2      1
  C15ORF52 WILD-TYPE     13     27     13
D75V1, multiclass
        clus
vv       C15ORF52 MUTATED C15ORF52 WILD-TYPE
  CLUS_1                0                 13
  CLUS_2                2                 27
  CLUS_3                1                 13
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C15ORF52 MUTATED        0      2      1
  C15ORF52 WILD-TYPE     18     22     13
D75V2, multiclass
        clus
vv       C15ORF52 MUTATED C15ORF52 WILD-TYPE
  CLUS_1                0                 18
  CLUS_2                2                 22
  CLUS_3                1                 13
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C15ORF52 MUTATED        0      1      1      0
  C15ORF52 WILD-TYPE     18     11      8      8
D75V3, multiclass
[1] "Remove cluster labels:" "C15ORF52 MUTATED"      
clus
  C15ORF52 MUTATED C15ORF52 WILD-TYPE 
                 2                 45 
        TCGA-F2-6879         TCGA-F2-7273         TCGA-F2-7276 
"C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" 
        TCGA-F2-A44G         TCGA-F2-A44H         TCGA-FB-A4P5 
"C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" 
        TCGA-FB-A4P6         TCGA-FB-A545         TCGA-H6-A45N 
"C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" 
        TCGA-HV-A5A3         TCGA-HV-A5A4         TCGA-HV-A5A5 
"C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" 
        TCGA-HV-A5A6         TCGA-HZ-7918         TCGA-HZ-7920 
"C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" 
        TCGA-HZ-7922         TCGA-HZ-7923         TCGA-HZ-7924 
"C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" 
        TCGA-HZ-7925         TCGA-HZ-7926         TCGA-HZ-8001 
"C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" 
        TCGA-HZ-8003         TCGA-HZ-8315         TCGA-HZ-8636 
"C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" 
        TCGA-HZ-8638         TCGA-HZ-A49G         TCGA-HZ-A49H 
"C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" 
        TCGA-HZ-A4BH         TCGA-HZ-A4BK         TCGA-IB-7644 
"C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" 
        TCGA-IB-7645         TCGA-IB-7646         TCGA-IB-7647 
"C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" 
        TCGA-IB-7649         TCGA-IB-7651         TCGA-IB-7652 
"C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" 
        TCGA-IB-7654         TCGA-IB-7885         TCGA-IB-7886 
"C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" 
        TCGA-IB-7887         TCGA-IB-7889         TCGA-IB-7890 
"C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" 
        TCGA-IB-7891         TCGA-IB-7893         TCGA-M8-A5N4 
"C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C15ORF52 MUTATED        0      0      2
  C15ORF52 WILD-TYPE      4     18     23
D75V4, multiclass
[1] "Remove cluster labels:" "C15ORF52 MUTATED"      
clus
  C15ORF52 MUTATED C15ORF52 WILD-TYPE 
                 2                 45 
        TCGA-F2-6879         TCGA-F2-7273         TCGA-F2-7276 
"C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" 
        TCGA-F2-A44G         TCGA-F2-A44H         TCGA-FB-A4P5 
"C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" 
        TCGA-FB-A4P6         TCGA-FB-A545         TCGA-H6-A45N 
"C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" 
        TCGA-HV-A5A3         TCGA-HV-A5A4         TCGA-HV-A5A5 
"C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" 
        TCGA-HV-A5A6         TCGA-HZ-7918         TCGA-HZ-7920 
"C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" 
        TCGA-HZ-7922         TCGA-HZ-7923         TCGA-HZ-7924 
"C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" 
        TCGA-HZ-7925         TCGA-HZ-7926         TCGA-HZ-8001 
"C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" 
        TCGA-HZ-8003         TCGA-HZ-8315         TCGA-HZ-8636 
"C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" 
        TCGA-HZ-8638         TCGA-HZ-A49G         TCGA-HZ-A49H 
"C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" 
        TCGA-HZ-A4BH         TCGA-HZ-A4BK         TCGA-IB-7644 
"C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" 
        TCGA-IB-7645         TCGA-IB-7646         TCGA-IB-7647 
"C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" 
        TCGA-IB-7649         TCGA-IB-7651         TCGA-IB-7652 
"C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" 
        TCGA-IB-7654         TCGA-IB-7885         TCGA-IB-7886 
"C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" 
        TCGA-IB-7887         TCGA-IB-7889         TCGA-IB-7890 
"C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" 
        TCGA-IB-7891         TCGA-IB-7893         TCGA-M8-A5N4 
"C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" "C15ORF52 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C15ORF52 MUTATED        1      1      1
  C15ORF52 WILD-TYPE     24     10     13
D75V5, multiclass
        clus
vv       C15ORF52 MUTATED C15ORF52 WILD-TYPE
  CLUS_1                1                 24
  CLUS_2                1                 10
  CLUS_3                1                 13
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C15ORF52 MUTATED        1      1      1
  C15ORF52 WILD-TYPE      7     18     22
D75V6, multiclass
        clus
vv       C15ORF52 MUTATED C15ORF52 WILD-TYPE
  CLUS_1                1                  7
  CLUS_2                1                 18
  CLUS_3                1                 22
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C15ORF52 MUTATED        1      0      2
  C15ORF52 WILD-TYPE     20      9     18
D75V7, multiclass
        clus
vv       C15ORF52 MUTATED C15ORF52 WILD-TYPE
  CLUS_1                1                 20
  CLUS_2                0                  9
  CLUS_3                2                 18
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C15ORF52 MUTATED        1      1      1
  C15ORF52 WILD-TYPE      8     21     18
D75V8, multiclass
        clus
vv       C15ORF52 MUTATED C15ORF52 WILD-TYPE
  CLUS_1                1                  8
  CLUS_2                1                 21
  CLUS_3                1                 18

Clustering(76) Variable = SLC39A5 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC39A5 MUTATED        1      2      0
  SLC39A5 WILD-TYPE     12     27     14
D76V1, multiclass
        clus
vv       SLC39A5 MUTATED SLC39A5 WILD-TYPE
  CLUS_1               1                12
  CLUS_2               2                27
  CLUS_3               0                14
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC39A5 MUTATED        1      2      0
  SLC39A5 WILD-TYPE     17     22     14
D76V2, multiclass
        clus
vv       SLC39A5 MUTATED SLC39A5 WILD-TYPE
  CLUS_1               1                17
  CLUS_2               2                22
  CLUS_3               0                14
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC39A5 MUTATED        1      1      1      0
  SLC39A5 WILD-TYPE     17     11      8      8
D76V3, multiclass
        clus
vv       SLC39A5 MUTATED SLC39A5 WILD-TYPE
  CLUS_1               1                17
  CLUS_2               1                11
  CLUS_3               1                 8
  CLUS_4               0                 8
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC39A5 MUTATED        0      1      2
  SLC39A5 WILD-TYPE      4     17     23
D76V4, multiclass
        clus
vv       SLC39A5 MUTATED SLC39A5 WILD-TYPE
  CLUS_1               0                 4
  CLUS_2               1                17
  CLUS_3               2                23
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC39A5 MUTATED        1      1      1
  SLC39A5 WILD-TYPE     24     10     13
D76V5, multiclass
        clus
vv       SLC39A5 MUTATED SLC39A5 WILD-TYPE
  CLUS_1               1                24
  CLUS_2               1                10
  CLUS_3               1                13
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC39A5 MUTATED        0      2      1
  SLC39A5 WILD-TYPE      8     17     22
D76V6, multiclass
        clus
vv       SLC39A5 MUTATED SLC39A5 WILD-TYPE
  CLUS_1               0                 8
  CLUS_2               2                17
  CLUS_3               1                22
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC39A5 MUTATED        1      1      1
  SLC39A5 WILD-TYPE     20      8     19
D76V7, multiclass
        clus
vv       SLC39A5 MUTATED SLC39A5 WILD-TYPE
  CLUS_1               1                20
  CLUS_2               1                 8
  CLUS_3               1                19
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC39A5 MUTATED        0      1      2
  SLC39A5 WILD-TYPE      9     21     17
D76V8, multiclass
        clus
vv       SLC39A5 MUTATED SLC39A5 WILD-TYPE
  CLUS_1               0                 9
  CLUS_2               1                21
  CLUS_3               2                17

Clustering(77) Variable = SLC24A1 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC24A1 MUTATED        0      4      0
  SLC24A1 WILD-TYPE     13     25     14
D77V1, multiclass
        clus
vv       SLC24A1 MUTATED SLC24A1 WILD-TYPE
  CLUS_1               0                13
  CLUS_2               4                25
  CLUS_3               0                14
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC24A1 MUTATED        0      3      1
  SLC24A1 WILD-TYPE     18     21     13
D77V2, multiclass
        clus
vv       SLC24A1 MUTATED SLC24A1 WILD-TYPE
  CLUS_1               0                18
  CLUS_2               3                21
  CLUS_3               1                13
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC24A1 MUTATED        1      1      2      0
  SLC24A1 WILD-TYPE     17     11      7      8
D77V3, multiclass
        clus
vv       SLC24A1 MUTATED SLC24A1 WILD-TYPE
  CLUS_1               1                17
  CLUS_2               1                11
  CLUS_3               2                 7
  CLUS_4               0                 8
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC24A1 MUTATED        0      1      3
  SLC24A1 WILD-TYPE      4     17     22
D77V4, multiclass
        clus
vv       SLC24A1 MUTATED SLC24A1 WILD-TYPE
  CLUS_1               0                 4
  CLUS_2               1                17
  CLUS_3               3                22
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC24A1 MUTATED        1      1      2
  SLC24A1 WILD-TYPE     24     10     12
D77V5, multiclass
        clus
vv       SLC24A1 MUTATED SLC24A1 WILD-TYPE
  CLUS_1               1                24
  CLUS_2               1                10
  CLUS_3               2                12
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC24A1 MUTATED        1      3      0
  SLC24A1 WILD-TYPE      7     16     23
D77V6, multiclass
        clus
vv       SLC24A1 MUTATED SLC24A1 WILD-TYPE
  CLUS_1               1                 7
  CLUS_2               3                16
  CLUS_3               0                23
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC24A1 MUTATED        0      1      3
  SLC24A1 WILD-TYPE     21      8     17
D77V7, multiclass
        clus
vv       SLC24A1 MUTATED SLC24A1 WILD-TYPE
  CLUS_1               0                21
  CLUS_2               1                 8
  CLUS_3               3                17
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC24A1 MUTATED        1      0      3
  SLC24A1 WILD-TYPE      8     22     16
D77V8, multiclass
        clus
vv       SLC24A1 MUTATED SLC24A1 WILD-TYPE
  CLUS_1               1                 8
  CLUS_2               0                22
  CLUS_3               3                16

Clustering(78) Variable = PUM2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PUM2 MUTATED        1      4      0
  PUM2 WILD-TYPE     12     25     14
D78V1, multiclass
        clus
vv       PUM2 MUTATED PUM2 WILD-TYPE
  CLUS_1            1             12
  CLUS_2            4             25
  CLUS_3            0             14
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PUM2 MUTATED        1      2      2
  PUM2 WILD-TYPE     17     22     12
D78V2, multiclass
        clus
vv       PUM2 MUTATED PUM2 WILD-TYPE
  CLUS_1            1             17
  CLUS_2            2             22
  CLUS_3            2             12
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PUM2 MUTATED        2      1      2      0
  PUM2 WILD-TYPE     16     11      7      8
D78V3, multiclass
        clus
vv       PUM2 MUTATED PUM2 WILD-TYPE
  CLUS_1            2             16
  CLUS_2            1             11
  CLUS_3            2              7
  CLUS_4            0              8
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PUM2 MUTATED        0      2      3
  PUM2 WILD-TYPE      4     16     22
D78V4, multiclass
        clus
vv       PUM2 MUTATED PUM2 WILD-TYPE
  CLUS_1            0              4
  CLUS_2            2             16
  CLUS_3            3             22
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PUM2 MUTATED        2      1      2
  PUM2 WILD-TYPE     23     10     12
D78V5, multiclass
        clus
vv       PUM2 MUTATED PUM2 WILD-TYPE
  CLUS_1            2             23
  CLUS_2            1             10
  CLUS_3            2             12
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PUM2 MUTATED        1      2      2
  PUM2 WILD-TYPE      7     17     21
D78V6, multiclass
        clus
vv       PUM2 MUTATED PUM2 WILD-TYPE
  CLUS_1            1              7
  CLUS_2            2             17
  CLUS_3            2             21
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PUM2 MUTATED        1      2      2
  PUM2 WILD-TYPE     20      7     18
D78V7, multiclass
        clus
vv       PUM2 MUTATED PUM2 WILD-TYPE
  CLUS_1            1             20
  CLUS_2            2              7
  CLUS_3            2             18
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PUM2 MUTATED        2      1      2
  PUM2 WILD-TYPE      7     21     17
D78V8, multiclass
        clus
vv       PUM2 MUTATED PUM2 WILD-TYPE
  CLUS_1            2              7
  CLUS_2            1             21
  CLUS_3            2             17

Clustering(79) Variable = SYT2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SYT2 MUTATED        0      5      0
  SYT2 WILD-TYPE     13     24     14
D79V1, multiclass
        clus
vv       SYT2 MUTATED SYT2 WILD-TYPE
  CLUS_1            0             13
  CLUS_2            5             24
  CLUS_3            0             14
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SYT2 MUTATED        0      5      0
  SYT2 WILD-TYPE     18     19     14
D79V2, multiclass
        clus
vv       SYT2 MUTATED SYT2 WILD-TYPE
  CLUS_1            0             18
  CLUS_2            5             19
  CLUS_3            0             14
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SYT2 MUTATED        0      2      2      1
  SYT2 WILD-TYPE     18     10      7      7
D79V3, multiclass
        clus
vv       SYT2 MUTATED SYT2 WILD-TYPE
  CLUS_1            0             18
  CLUS_2            2             10
  CLUS_3            2              7
  CLUS_4            1              7
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SYT2 MUTATED        0      0      5
  SYT2 WILD-TYPE      4     18     20
D79V4, multiclass
        clus
vv       SYT2 MUTATED SYT2 WILD-TYPE
  CLUS_1            0              4
  CLUS_2            0             18
  CLUS_3            5             20
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SYT2 MUTATED        0      2      3
  SYT2 WILD-TYPE     25      9     11
D79V5, multiclass
        clus
vv       SYT2 MUTATED SYT2 WILD-TYPE
  CLUS_1            0             25
  CLUS_2            2              9
  CLUS_3            3             11
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SYT2 MUTATED        2      3      0
  SYT2 WILD-TYPE      6     16     23
D79V6, multiclass
        clus
vv       SYT2 MUTATED SYT2 WILD-TYPE
  CLUS_1            2              6
  CLUS_2            3             16
  CLUS_3            0             23
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SYT2 MUTATED        0      1      4
  SYT2 WILD-TYPE     21      8     16
D79V7, multiclass
        clus
vv       SYT2 MUTATED SYT2 WILD-TYPE
  CLUS_1            0             21
  CLUS_2            1              8
  CLUS_3            4             16
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SYT2 MUTATED        2      0      3
  SYT2 WILD-TYPE      7     22     16
D79V8, multiclass
        clus
vv       SYT2 MUTATED SYT2 WILD-TYPE
  CLUS_1            2              7
  CLUS_2            0             22
  CLUS_3            3             16

Clustering(80) Variable = SLITRK5 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLITRK5 MUTATED        1      5      0
  SLITRK5 WILD-TYPE     12     24     14
D80V1, multiclass
        clus
vv       SLITRK5 MUTATED SLITRK5 WILD-TYPE
  CLUS_1               1                12
  CLUS_2               5                24
  CLUS_3               0                14
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLITRK5 MUTATED        1      3      2
  SLITRK5 WILD-TYPE     17     21     12
D80V2, multiclass
        clus
vv       SLITRK5 MUTATED SLITRK5 WILD-TYPE
  CLUS_1               1                17
  CLUS_2               3                21
  CLUS_3               2                12
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLITRK5 MUTATED        2      1      3      0
  SLITRK5 WILD-TYPE     16     11      6      8
D80V3, multiclass
        clus
vv       SLITRK5 MUTATED SLITRK5 WILD-TYPE
  CLUS_1               2                16
  CLUS_2               1                11
  CLUS_3               3                 6
  CLUS_4               0                 8
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLITRK5 MUTATED        0      2      4
  SLITRK5 WILD-TYPE      4     16     21
D80V4, multiclass
        clus
vv       SLITRK5 MUTATED SLITRK5 WILD-TYPE
  CLUS_1               0                 4
  CLUS_2               2                16
  CLUS_3               4                21
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLITRK5 MUTATED        2      1      3
  SLITRK5 WILD-TYPE     23     10     11
D80V5, multiclass
        clus
vv       SLITRK5 MUTATED SLITRK5 WILD-TYPE
  CLUS_1               2                23
  CLUS_2               1                10
  CLUS_3               3                11
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLITRK5 MUTATED        1      3      2
  SLITRK5 WILD-TYPE      7     16     21
D80V6, multiclass
        clus
vv       SLITRK5 MUTATED SLITRK5 WILD-TYPE
  CLUS_1               1                 7
  CLUS_2               3                16
  CLUS_3               2                21
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLITRK5 MUTATED        1      2      3
  SLITRK5 WILD-TYPE     20      7     17
D80V7, multiclass
        clus
vv       SLITRK5 MUTATED SLITRK5 WILD-TYPE
  CLUS_1               1                20
  CLUS_2               2                 7
  CLUS_3               3                17
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLITRK5 MUTATED        2      1      3
  SLITRK5 WILD-TYPE      7     21     16
D80V8, multiclass
        clus
vv       SLITRK5 MUTATED SLITRK5 WILD-TYPE
  CLUS_1               2                 7
  CLUS_2               1                21
  CLUS_3               3                16

Clustering(81) Variable = NAP1L3 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NAP1L3 MUTATED        0      2      1
  NAP1L3 WILD-TYPE     13     27     13
D81V1, multiclass
        clus
vv       NAP1L3 MUTATED NAP1L3 WILD-TYPE
  CLUS_1              0               13
  CLUS_2              2               27
  CLUS_3              1               13
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NAP1L3 MUTATED        1      2      0
  NAP1L3 WILD-TYPE     17     22     14
D81V2, multiclass
        clus
vv       NAP1L3 MUTATED NAP1L3 WILD-TYPE
  CLUS_1              1               17
  CLUS_2              2               22
  CLUS_3              0               14
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NAP1L3 MUTATED        1      0      2      0
  NAP1L3 WILD-TYPE     17     12      7      8
D81V3, multiclass
        clus
vv       NAP1L3 MUTATED NAP1L3 WILD-TYPE
  CLUS_1              1               17
  CLUS_2              0               12
  CLUS_3              2                7
  CLUS_4              0                8
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NAP1L3 MUTATED        0      1      2
  NAP1L3 WILD-TYPE      4     17     23
D81V4, multiclass
        clus
vv       NAP1L3 MUTATED NAP1L3 WILD-TYPE
  CLUS_1              0                4
  CLUS_2              1               17
  CLUS_3              2               23
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NAP1L3 MUTATED        1      0      2
  NAP1L3 WILD-TYPE     24     11     12
D81V5, multiclass
        clus
vv       NAP1L3 MUTATED NAP1L3 WILD-TYPE
  CLUS_1              1               24
  CLUS_2              0               11
  CLUS_3              2               12
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NAP1L3 MUTATED        1      1      1
  NAP1L3 WILD-TYPE      7     18     22
D81V6, multiclass
        clus
vv       NAP1L3 MUTATED NAP1L3 WILD-TYPE
  CLUS_1              1                7
  CLUS_2              1               18
  CLUS_3              1               22
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NAP1L3 MUTATED        1      0      2
  NAP1L3 WILD-TYPE     20      9     18
D81V7, multiclass
        clus
vv       NAP1L3 MUTATED NAP1L3 WILD-TYPE
  CLUS_1              1               20
  CLUS_2              0                9
  CLUS_3              2               18
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NAP1L3 MUTATED        1      1      1
  NAP1L3 WILD-TYPE      8     21     18
D81V8, multiclass
        clus
vv       NAP1L3 MUTATED NAP1L3 WILD-TYPE
  CLUS_1              1                8
  CLUS_2              1               21
  CLUS_3              1               18

Clustering(82) Variable = PHF14 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PHF14 MUTATED        1      2      0
  PHF14 WILD-TYPE     12     27     14
D82V1, multiclass
        clus
vv       PHF14 MUTATED PHF14 WILD-TYPE
  CLUS_1             1              12
  CLUS_2             2              27
  CLUS_3             0              14
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PHF14 MUTATED        1      2      0
  PHF14 WILD-TYPE     17     22     14
D82V2, multiclass
        clus
vv       PHF14 MUTATED PHF14 WILD-TYPE
  CLUS_1             1              17
  CLUS_2             2              22
  CLUS_3             0              14
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PHF14 MUTATED        1      1      1      0
  PHF14 WILD-TYPE     17     11      8      8
D82V3, multiclass
        clus
vv       PHF14 MUTATED PHF14 WILD-TYPE
  CLUS_1             1              17
  CLUS_2             1              11
  CLUS_3             1               8
  CLUS_4             0               8
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PHF14 MUTATED        0      1      2
  PHF14 WILD-TYPE      4     17     23
D82V4, multiclass
        clus
vv       PHF14 MUTATED PHF14 WILD-TYPE
  CLUS_1             0               4
  CLUS_2             1              17
  CLUS_3             2              23
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PHF14 MUTATED        1      1      1
  PHF14 WILD-TYPE     24     10     13
D82V5, multiclass
        clus
vv       PHF14 MUTATED PHF14 WILD-TYPE
  CLUS_1             1              24
  CLUS_2             1              10
  CLUS_3             1              13
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PHF14 MUTATED        1      1      1
  PHF14 WILD-TYPE      7     18     22
D82V6, multiclass
        clus
vv       PHF14 MUTATED PHF14 WILD-TYPE
  CLUS_1             1               7
  CLUS_2             1              18
  CLUS_3             1              22
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PHF14 MUTATED        1      0      2
  PHF14 WILD-TYPE     20      9     18
D82V7, multiclass
        clus
vv       PHF14 MUTATED PHF14 WILD-TYPE
  CLUS_1             1              20
  CLUS_2             0               9
  CLUS_3             2              18
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PHF14 MUTATED        1      1      1
  PHF14 WILD-TYPE      8     21     18
D82V8, multiclass
        clus
vv       PHF14 MUTATED PHF14 WILD-TYPE
  CLUS_1             1               8
  CLUS_2             1              21
  CLUS_3             1              18

Clustering(83) Variable = CCDC28B MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CCDC28B MUTATED        0      4      0
  CCDC28B WILD-TYPE     13     25     14
D83V1, multiclass
        clus
vv       CCDC28B MUTATED CCDC28B WILD-TYPE
  CLUS_1               0                13
  CLUS_2               4                25
  CLUS_3               0                14
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CCDC28B MUTATED        0      3      1
  CCDC28B WILD-TYPE     18     21     13
D83V2, multiclass
        clus
vv       CCDC28B MUTATED CCDC28B WILD-TYPE
  CLUS_1               0                18
  CLUS_2               3                21
  CLUS_3               1                13
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC28B MUTATED        0      0      3      1
  CCDC28B WILD-TYPE     18     12      6      7
D83V3, multiclass
        clus
vv       CCDC28B MUTATED CCDC28B WILD-TYPE
  CLUS_1               0                18
  CLUS_2               0                12
  CLUS_3               3                 6
  CLUS_4               1                 7
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CCDC28B MUTATED        1      0      3
  CCDC28B WILD-TYPE      3     18     22
D83V4, multiclass
        clus
vv       CCDC28B MUTATED CCDC28B WILD-TYPE
  CLUS_1               1                 3
  CLUS_2               0                18
  CLUS_3               3                22
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CCDC28B MUTATED        1      0      3
  CCDC28B WILD-TYPE     24     11     11
D83V5, multiclass
        clus
vv       CCDC28B MUTATED CCDC28B WILD-TYPE
  CLUS_1               1                24
  CLUS_2               0                11
  CLUS_3               3                11
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CCDC28B MUTATED        1      1      2
  CCDC28B WILD-TYPE      7     18     21
D83V6, multiclass
        clus
vv       CCDC28B MUTATED CCDC28B WILD-TYPE
  CLUS_1               1                 7
  CLUS_2               1                18
  CLUS_3               2                21
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CCDC28B MUTATED        0      1      3
  CCDC28B WILD-TYPE     21      8     17
D83V7, multiclass
        clus
vv       CCDC28B MUTATED CCDC28B WILD-TYPE
  CLUS_1               0                21
  CLUS_2               1                 8
  CLUS_3               3                17
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CCDC28B MUTATED        2      1      1
  CCDC28B WILD-TYPE      7     21     18
D83V8, multiclass
        clus
vv       CCDC28B MUTATED CCDC28B WILD-TYPE
  CLUS_1               2                 7
  CLUS_2               1                21
  CLUS_3               1                18

Clustering(84) Variable = PDE12 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PDE12 MUTATED        0      1      1
  PDE12 WILD-TYPE     13     28     13
D84V1, multiclass
[1] "Remove cluster labels:" "PDE12 MUTATED"         
clus
  PDE12 MUTATED PDE12 WILD-TYPE 
              2              54 
     TCGA-F2-6879      TCGA-F2-6880      TCGA-F2-7273      TCGA-F2-7276 
"PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" 
     TCGA-F2-A44G      TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A545 
"PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" 
     TCGA-FZ-5919      TCGA-FZ-5920      TCGA-FZ-5921      TCGA-FZ-5922 
"PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" 
     TCGA-FZ-5923      TCGA-FZ-5924      TCGA-FZ-5926      TCGA-H6-A45N 
"PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" 
     TCGA-HV-A5A3      TCGA-HV-A5A4      TCGA-HV-A5A5      TCGA-HV-A5A6 
"PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" 
     TCGA-HZ-7289      TCGA-HZ-7918      TCGA-HZ-7920      TCGA-HZ-7922 
"PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" 
     TCGA-HZ-7923      TCGA-HZ-7924      TCGA-HZ-7925      TCGA-HZ-7926 
"PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" 
     TCGA-HZ-8001      TCGA-HZ-8002      TCGA-HZ-8315      TCGA-HZ-8636 
"PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" 
     TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H      TCGA-HZ-A4BH 
"PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" 
     TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645      TCGA-IB-7646 
"PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" 
     TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7651      TCGA-IB-7652 
"PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" 
     TCGA-IB-7654      TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887 
"PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" 
     TCGA-IB-7889      TCGA-IB-7890      TCGA-IB-7891      TCGA-IB-7893 
"PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" 
     TCGA-IB-7897      TCGA-M8-A5N4 
"PDE12 WILD-TYPE" "PDE12 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PDE12 MUTATED        0      2      1
  PDE12 WILD-TYPE     18     22     13
D84V2, multiclass
        clus
vv       PDE12 MUTATED PDE12 WILD-TYPE
  CLUS_1             0              18
  CLUS_2             2              22
  CLUS_3             1              13
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PDE12 MUTATED        0      1      1      0
  PDE12 WILD-TYPE     18     11      8      8
D84V3, multiclass
[1] "Remove cluster labels:" "PDE12 MUTATED"         
clus
  PDE12 MUTATED PDE12 WILD-TYPE 
              2              45 
     TCGA-F2-6879      TCGA-F2-7273      TCGA-F2-7276      TCGA-F2-A44G 
"PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" 
     TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A545      TCGA-H6-A45N 
"PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" 
     TCGA-HV-A5A3      TCGA-HV-A5A4      TCGA-HV-A5A5      TCGA-HV-A5A6 
"PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" 
     TCGA-HZ-7918      TCGA-HZ-7920      TCGA-HZ-7922      TCGA-HZ-7923 
"PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" 
     TCGA-HZ-7924      TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001 
"PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" 
     TCGA-HZ-8002      TCGA-HZ-8315      TCGA-HZ-8636      TCGA-HZ-8638 
"PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" 
     TCGA-HZ-A49G      TCGA-HZ-A49H      TCGA-HZ-A4BH      TCGA-HZ-A4BK 
"PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" 
     TCGA-IB-7644      TCGA-IB-7645      TCGA-IB-7646      TCGA-IB-7647 
"PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" 
     TCGA-IB-7649      TCGA-IB-7651      TCGA-IB-7652      TCGA-IB-7654 
"PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" 
     TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887      TCGA-IB-7889 
"PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" 
     TCGA-IB-7890      TCGA-IB-7891      TCGA-IB-7893      TCGA-IB-7897 
"PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" 
     TCGA-M8-A5N4 
"PDE12 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PDE12 MUTATED        0      0      2
  PDE12 WILD-TYPE      4     18     23
D84V4, multiclass
[1] "Remove cluster labels:" "PDE12 MUTATED"         
clus
  PDE12 MUTATED PDE12 WILD-TYPE 
              2              45 
     TCGA-F2-6879      TCGA-F2-7273      TCGA-F2-7276      TCGA-F2-A44G 
"PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" 
     TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A545      TCGA-H6-A45N 
"PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" 
     TCGA-HV-A5A3      TCGA-HV-A5A4      TCGA-HV-A5A5      TCGA-HV-A5A6 
"PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" 
     TCGA-HZ-7918      TCGA-HZ-7920      TCGA-HZ-7922      TCGA-HZ-7923 
"PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" 
     TCGA-HZ-7924      TCGA-HZ-7925      TCGA-HZ-7926      TCGA-HZ-8001 
"PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" 
     TCGA-HZ-8002      TCGA-HZ-8315      TCGA-HZ-8636      TCGA-HZ-8638 
"PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" 
     TCGA-HZ-A49G      TCGA-HZ-A49H      TCGA-HZ-A4BH      TCGA-HZ-A4BK 
"PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" 
     TCGA-IB-7644      TCGA-IB-7645      TCGA-IB-7646      TCGA-IB-7647 
"PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" 
     TCGA-IB-7649      TCGA-IB-7651      TCGA-IB-7652      TCGA-IB-7654 
"PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" 
     TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887      TCGA-IB-7889 
"PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" 
     TCGA-IB-7890      TCGA-IB-7891      TCGA-IB-7893      TCGA-IB-7897 
"PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" "PDE12 WILD-TYPE" 
     TCGA-M8-A5N4 
"PDE12 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PDE12 MUTATED        1      1      1
  PDE12 WILD-TYPE     24     10     13
D84V5, multiclass
        clus
vv       PDE12 MUTATED PDE12 WILD-TYPE
  CLUS_1             1              24
  CLUS_2             1              10
  CLUS_3             1              13
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PDE12 MUTATED        0      2      1
  PDE12 WILD-TYPE      8     17     22
D84V6, multiclass
        clus
vv       PDE12 MUTATED PDE12 WILD-TYPE
  CLUS_1             0               8
  CLUS_2             2              17
  CLUS_3             1              22
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PDE12 MUTATED        1      0      2
  PDE12 WILD-TYPE     20      9     18
D84V7, multiclass
        clus
vv       PDE12 MUTATED PDE12 WILD-TYPE
  CLUS_1             1              20
  CLUS_2             0               9
  CLUS_3             2              18
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PDE12 MUTATED        0      1      2
  PDE12 WILD-TYPE      9     21     17
D84V8, multiclass
        clus
vv       PDE12 MUTATED PDE12 WILD-TYPE
  CLUS_1             0               9
  CLUS_2             1              21
  CLUS_3             2              17

Clustering(85) Variable = FLAD1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FLAD1 MUTATED        0      3      0
  FLAD1 WILD-TYPE     13     26     14
D85V1, multiclass
        clus
vv       FLAD1 MUTATED FLAD1 WILD-TYPE
  CLUS_1             0              13
  CLUS_2             3              26
  CLUS_3             0              14
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FLAD1 MUTATED        0      3      0
  FLAD1 WILD-TYPE     18     21     14
D85V2, multiclass
        clus
vv       FLAD1 MUTATED FLAD1 WILD-TYPE
  CLUS_1             0              18
  CLUS_2             3              21
  CLUS_3             0              14
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FLAD1 MUTATED        0      1      2      0
  FLAD1 WILD-TYPE     18     11      7      8
D85V3, multiclass
        clus
vv       FLAD1 MUTATED FLAD1 WILD-TYPE
  CLUS_1             0              18
  CLUS_2             1              11
  CLUS_3             2               7
  CLUS_4             0               8
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FLAD1 MUTATED        0      0      3
  FLAD1 WILD-TYPE      4     18     22
D85V4, multiclass
        clus
vv       FLAD1 MUTATED FLAD1 WILD-TYPE
  CLUS_1             0               4
  CLUS_2             0              18
  CLUS_3             3              22
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FLAD1 MUTATED        0      1      2
  FLAD1 WILD-TYPE     25     10     12
D85V5, multiclass
        clus
vv       FLAD1 MUTATED FLAD1 WILD-TYPE
  CLUS_1             0              25
  CLUS_2             1              10
  CLUS_3             2              12
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FLAD1 MUTATED        1      2      0
  FLAD1 WILD-TYPE      7     17     23
D85V6, multiclass
        clus
vv       FLAD1 MUTATED FLAD1 WILD-TYPE
  CLUS_1             1               7
  CLUS_2             2              17
  CLUS_3             0              23
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FLAD1 MUTATED        0      0      3
  FLAD1 WILD-TYPE     21      9     17
D85V7, multiclass
        clus
vv       FLAD1 MUTATED FLAD1 WILD-TYPE
  CLUS_1             0              21
  CLUS_2             0               9
  CLUS_3             3              17
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FLAD1 MUTATED        1      0      2
  FLAD1 WILD-TYPE      8     22     17
D85V8, multiclass
        clus
vv       FLAD1 MUTATED FLAD1 WILD-TYPE
  CLUS_1             1               8
  CLUS_2             0              22
  CLUS_3             2              17

Clustering(86) Variable = ENG MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  ENG MUTATED        0      3      0
  ENG WILD-TYPE     13     26     14
D86V1, multiclass
        clus
vv       ENG MUTATED ENG WILD-TYPE
  CLUS_1           0            13
  CLUS_2           3            26
  CLUS_3           0            14
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  ENG MUTATED        0      3      0
  ENG WILD-TYPE     18     21     14
D86V2, multiclass
        clus
vv       ENG MUTATED ENG WILD-TYPE
  CLUS_1           0            18
  CLUS_2           3            21
  CLUS_3           0            14
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ENG MUTATED        0      1      2      0
  ENG WILD-TYPE     18     11      7      8
D86V3, multiclass
        clus
vv       ENG MUTATED ENG WILD-TYPE
  CLUS_1           0            18
  CLUS_2           1            11
  CLUS_3           2             7
  CLUS_4           0             8
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  ENG MUTATED        0      0      3
  ENG WILD-TYPE      4     18     22
D86V4, multiclass
        clus
vv       ENG MUTATED ENG WILD-TYPE
  CLUS_1           0             4
  CLUS_2           0            18
  CLUS_3           3            22
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  ENG MUTATED        0      1      2
  ENG WILD-TYPE     25     10     12
D86V5, multiclass
        clus
vv       ENG MUTATED ENG WILD-TYPE
  CLUS_1           0            25
  CLUS_2           1            10
  CLUS_3           2            12
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  ENG MUTATED        2      1      0
  ENG WILD-TYPE      6     18     23
D86V6, multiclass
        clus
vv       ENG MUTATED ENG WILD-TYPE
  CLUS_1           2             6
  CLUS_2           1            18
  CLUS_3           0            23
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  ENG MUTATED        0      1      2
  ENG WILD-TYPE     21      8     18
D86V7, multiclass
        clus
vv       ENG MUTATED ENG WILD-TYPE
  CLUS_1           0            21
  CLUS_2           1             8
  CLUS_3           2            18
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  ENG MUTATED        2      0      1
  ENG WILD-TYPE      7     22     18
D86V8, multiclass
        clus
vv       ENG MUTATED ENG WILD-TYPE
  CLUS_1           2             7
  CLUS_2           0            22
  CLUS_3           1            18

Clustering(87) Variable = PABPC1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PABPC1 MUTATED        0      2      2
  PABPC1 WILD-TYPE     13     27     12
D87V1, multiclass
        clus
vv       PABPC1 MUTATED PABPC1 WILD-TYPE
  CLUS_1              0               13
  CLUS_2              2               27
  CLUS_3              2               12
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PABPC1 MUTATED        1      1      2
  PABPC1 WILD-TYPE     17     23     12
D87V2, multiclass
        clus
vv       PABPC1 MUTATED PABPC1 WILD-TYPE
  CLUS_1              1               17
  CLUS_2              1               23
  CLUS_3              2               12
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PABPC1 MUTATED        1      1      0      1
  PABPC1 WILD-TYPE     17     11      9      7
D87V3, multiclass
        clus
vv       PABPC1 MUTATED PABPC1 WILD-TYPE
  CLUS_1              1               17
  CLUS_2              1               11
  CLUS_3              0                9
  CLUS_4              1                7
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PABPC1 MUTATED        0      1      2
  PABPC1 WILD-TYPE      4     17     23
D87V4, multiclass
        clus
vv       PABPC1 MUTATED PABPC1 WILD-TYPE
  CLUS_1              0                4
  CLUS_2              1               17
  CLUS_3              2               23
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PABPC1 MUTATED        2      1      1
  PABPC1 WILD-TYPE     23     10     13
D87V5, multiclass
        clus
vv       PABPC1 MUTATED PABPC1 WILD-TYPE
  CLUS_1              2               23
  CLUS_2              1               10
  CLUS_3              1               13
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PABPC1 MUTATED        0      2      2
  PABPC1 WILD-TYPE      8     17     21
D87V6, multiclass
        clus
vv       PABPC1 MUTATED PABPC1 WILD-TYPE
  CLUS_1              0                8
  CLUS_2              2               17
  CLUS_3              2               21
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PABPC1 MUTATED        2      0      2
  PABPC1 WILD-TYPE     19      9     18
D87V7, multiclass
        clus
vv       PABPC1 MUTATED PABPC1 WILD-TYPE
  CLUS_1              2               19
  CLUS_2              0                9
  CLUS_3              2               18
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PABPC1 MUTATED        0      2      2
  PABPC1 WILD-TYPE      9     20     17
D87V8, multiclass
        clus
vv       PABPC1 MUTATED PABPC1 WILD-TYPE
  CLUS_1              0                9
  CLUS_2              2               20
  CLUS_3              2               17

Clustering(88) Variable = ATG16L2 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ATG16L2 MUTATED        0      2      1
  ATG16L2 WILD-TYPE     13     27     13
D88V1, multiclass
        clus
vv       ATG16L2 MUTATED ATG16L2 WILD-TYPE
  CLUS_1               0                13
  CLUS_2               2                27
  CLUS_3               1                13
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ATG16L2 MUTATED        0      1      2
  ATG16L2 WILD-TYPE     18     23     12
D88V2, multiclass
        clus
vv       ATG16L2 MUTATED ATG16L2 WILD-TYPE
  CLUS_1               0                18
  CLUS_2               1                23
  CLUS_3               2                12
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATG16L2 MUTATED        1      0      2      0
  ATG16L2 WILD-TYPE     17     12      7      8
D88V3, multiclass
        clus
vv       ATG16L2 MUTATED ATG16L2 WILD-TYPE
  CLUS_1               1                17
  CLUS_2               0                12
  CLUS_3               2                 7
  CLUS_4               0                 8
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ATG16L2 MUTATED        0      1      2
  ATG16L2 WILD-TYPE      4     17     23
D88V4, multiclass
        clus
vv       ATG16L2 MUTATED ATG16L2 WILD-TYPE
  CLUS_1               0                 4
  CLUS_2               1                17
  CLUS_3               2                23
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ATG16L2 MUTATED        1      0      2
  ATG16L2 WILD-TYPE     24     11     12
D88V5, multiclass
        clus
vv       ATG16L2 MUTATED ATG16L2 WILD-TYPE
  CLUS_1               1                24
  CLUS_2               0                11
  CLUS_3               2                12
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ATG16L2 MUTATED        1      0      2
  ATG16L2 WILD-TYPE      7     19     21
D88V6, multiclass
        clus
vv       ATG16L2 MUTATED ATG16L2 WILD-TYPE
  CLUS_1               1                 7
  CLUS_2               0                19
  CLUS_3               2                21
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ATG16L2 MUTATED        1      0      2
  ATG16L2 WILD-TYPE     20      9     18
D88V7, multiclass
        clus
vv       ATG16L2 MUTATED ATG16L2 WILD-TYPE
  CLUS_1               1                20
  CLUS_2               0                 9
  CLUS_3               2                18
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ATG16L2 MUTATED        2      1      0
  ATG16L2 WILD-TYPE      7     21     19
D88V8, multiclass
        clus
vv       ATG16L2 MUTATED ATG16L2 WILD-TYPE
  CLUS_1               2                 7
  CLUS_2               1                21
  CLUS_3               0                19

Clustering(89) Variable = LRCH1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LRCH1 MUTATED        1      5      1
  LRCH1 WILD-TYPE     12     24     13
D89V1, multiclass
        clus
vv       LRCH1 MUTATED LRCH1 WILD-TYPE
  CLUS_1             1              12
  CLUS_2             5              24
  CLUS_3             1              13
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LRCH1 MUTATED        1      3      3
  LRCH1 WILD-TYPE     17     21     11
D89V2, multiclass
        clus
vv       LRCH1 MUTATED LRCH1 WILD-TYPE
  CLUS_1             1              17
  CLUS_2             3              21
  CLUS_3             3              11
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LRCH1 MUTATED        3      1      3      0
  LRCH1 WILD-TYPE     15     11      6      8
D89V3, multiclass
        clus
vv       LRCH1 MUTATED LRCH1 WILD-TYPE
  CLUS_1             3              15
  CLUS_2             1              11
  CLUS_3             3               6
  CLUS_4             0               8
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LRCH1 MUTATED        0      3      4
  LRCH1 WILD-TYPE      4     15     21
D89V4, multiclass
        clus
vv       LRCH1 MUTATED LRCH1 WILD-TYPE
  CLUS_1             0               4
  CLUS_2             3              15
  CLUS_3             4              21
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LRCH1 MUTATED        3      1      3
  LRCH1 WILD-TYPE     22     10     11
D89V5, multiclass
        clus
vv       LRCH1 MUTATED LRCH1 WILD-TYPE
  CLUS_1             3              22
  CLUS_2             1              10
  CLUS_3             3              11
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LRCH1 MUTATED        2      2      3
  LRCH1 WILD-TYPE      6     17     20
D89V6, multiclass
        clus
vv       LRCH1 MUTATED LRCH1 WILD-TYPE
  CLUS_1             2               6
  CLUS_2             2              17
  CLUS_3             3              20
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LRCH1 MUTATED        2      1      4
  LRCH1 WILD-TYPE     19      8     16
D89V7, multiclass
        clus
vv       LRCH1 MUTATED LRCH1 WILD-TYPE
  CLUS_1             2              19
  CLUS_2             1               8
  CLUS_3             4              16
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LRCH1 MUTATED        3      2      2
  LRCH1 WILD-TYPE      6     20     17
D89V8, multiclass
        clus
vv       LRCH1 MUTATED LRCH1 WILD-TYPE
  CLUS_1             3               6
  CLUS_2             2              20
  CLUS_3             2              17

Clustering(90) Variable = PLCZ1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PLCZ1 MUTATED        0      2      1
  PLCZ1 WILD-TYPE     13     27     13
D90V1, multiclass
        clus
vv       PLCZ1 MUTATED PLCZ1 WILD-TYPE
  CLUS_1             0              13
  CLUS_2             2              27
  CLUS_3             1              13
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PLCZ1 MUTATED        0      1      2
  PLCZ1 WILD-TYPE     18     23     12
D90V2, multiclass
        clus
vv       PLCZ1 MUTATED PLCZ1 WILD-TYPE
  CLUS_1             0              18
  CLUS_2             1              23
  CLUS_3             2              12
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLCZ1 MUTATED        1      0      2      0
  PLCZ1 WILD-TYPE     17     12      7      8
D90V3, multiclass
        clus
vv       PLCZ1 MUTATED PLCZ1 WILD-TYPE
  CLUS_1             1              17
  CLUS_2             0              12
  CLUS_3             2               7
  CLUS_4             0               8
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PLCZ1 MUTATED        0      1      2
  PLCZ1 WILD-TYPE      4     17     23
D90V4, multiclass
        clus
vv       PLCZ1 MUTATED PLCZ1 WILD-TYPE
  CLUS_1             0               4
  CLUS_2             1              17
  CLUS_3             2              23
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PLCZ1 MUTATED        1      0      2
  PLCZ1 WILD-TYPE     24     11     12
D90V5, multiclass
        clus
vv       PLCZ1 MUTATED PLCZ1 WILD-TYPE
  CLUS_1             1              24
  CLUS_2             0              11
  CLUS_3             2              12
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PLCZ1 MUTATED        0      1      2
  PLCZ1 WILD-TYPE      8     18     21
D90V6, multiclass
        clus
vv       PLCZ1 MUTATED PLCZ1 WILD-TYPE
  CLUS_1             0               8
  CLUS_2             1              18
  CLUS_3             2              21
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PLCZ1 MUTATED        1      0      2
  PLCZ1 WILD-TYPE     20      9     18
D90V7, multiclass
        clus
vv       PLCZ1 MUTATED PLCZ1 WILD-TYPE
  CLUS_1             1              20
  CLUS_2             0               9
  CLUS_3             2              18
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PLCZ1 MUTATED        1      1      1
  PLCZ1 WILD-TYPE      8     21     18
D90V8, multiclass
        clus
vv       PLCZ1 MUTATED PLCZ1 WILD-TYPE
  CLUS_1             1               8
  CLUS_2             1              21
  CLUS_3             1              18

Clustering(91) Variable = TAOK2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TAOK2 MUTATED        1      4      1
  TAOK2 WILD-TYPE     12     25     13
D91V1, multiclass
        clus
vv       TAOK2 MUTATED TAOK2 WILD-TYPE
  CLUS_1             1              12
  CLUS_2             4              25
  CLUS_3             1              13
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TAOK2 MUTATED        2      3      1
  TAOK2 WILD-TYPE     16     21     13
D91V2, multiclass
        clus
vv       TAOK2 MUTATED TAOK2 WILD-TYPE
  CLUS_1             2              16
  CLUS_2             3              21
  CLUS_3             1              13
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TAOK2 MUTATED        2      2      1      1
  TAOK2 WILD-TYPE     16     10      8      7
D91V3, multiclass
        clus
vv       TAOK2 MUTATED TAOK2 WILD-TYPE
  CLUS_1             2              16
  CLUS_2             2              10
  CLUS_3             1               8
  CLUS_4             1               7
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TAOK2 MUTATED        1      2      3
  TAOK2 WILD-TYPE      3     16     22
D91V4, multiclass
        clus
vv       TAOK2 MUTATED TAOK2 WILD-TYPE
  CLUS_1             1               3
  CLUS_2             2              16
  CLUS_3             3              22
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TAOK2 MUTATED        3      1      2
  TAOK2 WILD-TYPE     22     10     12
D91V5, multiclass
        clus
vv       TAOK2 MUTATED TAOK2 WILD-TYPE
  CLUS_1             3              22
  CLUS_2             1              10
  CLUS_3             2              12
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TAOK2 MUTATED        1      3      2
  TAOK2 WILD-TYPE      7     16     21
D91V6, multiclass
        clus
vv       TAOK2 MUTATED TAOK2 WILD-TYPE
  CLUS_1             1               7
  CLUS_2             3              16
  CLUS_3             2              21
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TAOK2 MUTATED        1      3      2
  TAOK2 WILD-TYPE     20      6     18
D91V7, multiclass
        clus
vv       TAOK2 MUTATED TAOK2 WILD-TYPE
  CLUS_1             1              20
  CLUS_2             3               6
  CLUS_3             2              18
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TAOK2 MUTATED        1      2      3
  TAOK2 WILD-TYPE      8     20     16
D91V8, multiclass
        clus
vv       TAOK2 MUTATED TAOK2 WILD-TYPE
  CLUS_1             1               8
  CLUS_2             2              20
  CLUS_3             3              16

Clustering(92) Variable = ZMIZ1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZMIZ1 MUTATED        3      3      0
  ZMIZ1 WILD-TYPE     10     26     14
D92V1, multiclass
        clus
vv       ZMIZ1 MUTATED ZMIZ1 WILD-TYPE
  CLUS_1             3              10
  CLUS_2             3              26
  CLUS_3             0              14
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZMIZ1 MUTATED        2      2      2
  ZMIZ1 WILD-TYPE     16     22     12
D92V2, multiclass
        clus
vv       ZMIZ1 MUTATED ZMIZ1 WILD-TYPE
  CLUS_1             2              16
  CLUS_2             2              22
  CLUS_3             2              12
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZMIZ1 MUTATED        3      0      1      1
  ZMIZ1 WILD-TYPE     15     12      8      7
D92V3, multiclass
        clus
vv       ZMIZ1 MUTATED ZMIZ1 WILD-TYPE
  CLUS_1             3              15
  CLUS_2             0              12
  CLUS_3             1               8
  CLUS_4             1               7
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZMIZ1 MUTATED        1      2      2
  ZMIZ1 WILD-TYPE      3     16     23
D92V4, multiclass
        clus
vv       ZMIZ1 MUTATED ZMIZ1 WILD-TYPE
  CLUS_1             1               3
  CLUS_2             2              16
  CLUS_3             2              23
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZMIZ1 MUTATED        4      1      1
  ZMIZ1 WILD-TYPE     21     10     13
D92V5, multiclass
        clus
vv       ZMIZ1 MUTATED ZMIZ1 WILD-TYPE
  CLUS_1             4              21
  CLUS_2             1              10
  CLUS_3             1              13
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZMIZ1 MUTATED        1      2      3
  ZMIZ1 WILD-TYPE      7     17     20
D92V6, multiclass
        clus
vv       ZMIZ1 MUTATED ZMIZ1 WILD-TYPE
  CLUS_1             1               7
  CLUS_2             2              17
  CLUS_3             3              20
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZMIZ1 MUTATED        3      2      1
  ZMIZ1 WILD-TYPE     18      7     19
D92V7, multiclass
        clus
vv       ZMIZ1 MUTATED ZMIZ1 WILD-TYPE
  CLUS_1             3              18
  CLUS_2             2               7
  CLUS_3             1              19
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZMIZ1 MUTATED        1      3      2
  ZMIZ1 WILD-TYPE      8     19     17
D92V8, multiclass
        clus
vv       ZMIZ1 MUTATED ZMIZ1 WILD-TYPE
  CLUS_1             1               8
  CLUS_2             3              19
  CLUS_3             2              17

Clustering(93) Variable = SYT15 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SYT15 MUTATED        1      4      1
  SYT15 WILD-TYPE     12     25     13
D93V1, multiclass
        clus
vv       SYT15 MUTATED SYT15 WILD-TYPE
  CLUS_1             1              12
  CLUS_2             4              25
  CLUS_3             1              13
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SYT15 MUTATED        1      1      4
  SYT15 WILD-TYPE     17     23     10
D93V2, multiclass
        clus
vv       SYT15 MUTATED SYT15 WILD-TYPE
  CLUS_1             1              17
  CLUS_2             1              23
  CLUS_3             4              10
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SYT15 MUTATED        3      2      1      0
  SYT15 WILD-TYPE     15     10      8      8
D93V3, multiclass
        clus
vv       SYT15 MUTATED SYT15 WILD-TYPE
  CLUS_1             3              15
  CLUS_2             2              10
  CLUS_3             1               8
  CLUS_4             0               8
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SYT15 MUTATED        0      3      3
  SYT15 WILD-TYPE      4     15     22
D93V4, multiclass
        clus
vv       SYT15 MUTATED SYT15 WILD-TYPE
  CLUS_1             0               4
  CLUS_2             3              15
  CLUS_3             3              22
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SYT15 MUTATED        3      1      2
  SYT15 WILD-TYPE     22     10     12
D93V5, multiclass
        clus
vv       SYT15 MUTATED SYT15 WILD-TYPE
  CLUS_1             3              22
  CLUS_2             1              10
  CLUS_3             2              12
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SYT15 MUTATED        0      3      3
  SYT15 WILD-TYPE      8     16     20
D93V6, multiclass
        clus
vv       SYT15 MUTATED SYT15 WILD-TYPE
  CLUS_1             0               8
  CLUS_2             3              16
  CLUS_3             3              20
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SYT15 MUTATED        2      1      3
  SYT15 WILD-TYPE     19      8     17
D93V7, multiclass
        clus
vv       SYT15 MUTATED SYT15 WILD-TYPE
  CLUS_1             2              19
  CLUS_2             1               8
  CLUS_3             3              17
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SYT15 MUTATED        1      2      3
  SYT15 WILD-TYPE      8     20     16
D93V8, multiclass
        clus
vv       SYT15 MUTATED SYT15 WILD-TYPE
  CLUS_1             1               8
  CLUS_2             2              20
  CLUS_3             3              16

Clustering(94) Variable = LRTM1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LRTM1 MUTATED        0      3      0
  LRTM1 WILD-TYPE     13     26     14
D94V1, multiclass
        clus
vv       LRTM1 MUTATED LRTM1 WILD-TYPE
  CLUS_1             0              13
  CLUS_2             3              26
  CLUS_3             0              14
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LRTM1 MUTATED        0      3      0
  LRTM1 WILD-TYPE     18     21     14
D94V2, multiclass
        clus
vv       LRTM1 MUTATED LRTM1 WILD-TYPE
  CLUS_1             0              18
  CLUS_2             3              21
  CLUS_3             0              14
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LRTM1 MUTATED        0      0      0      3
  LRTM1 WILD-TYPE     18     12      9      5
D94V3, multiclass
        clus
vv       LRTM1 MUTATED LRTM1 WILD-TYPE
  CLUS_1             0              18
  CLUS_2             0              12
  CLUS_3             0               9
  CLUS_4             3               5
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LRTM1 MUTATED        1      1      1
  LRTM1 WILD-TYPE      3     17     24
D94V4, multiclass
        clus
vv       LRTM1 MUTATED LRTM1 WILD-TYPE
  CLUS_1             1               3
  CLUS_2             1              17
  CLUS_3             1              24
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LRTM1 MUTATED        2      0      1
  LRTM1 WILD-TYPE     23     11     13
D94V5, multiclass
        clus
vv       LRTM1 MUTATED LRTM1 WILD-TYPE
  CLUS_1             2              23
  CLUS_2             0              11
  CLUS_3             1              13
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LRTM1 MUTATED        1      0      2
  LRTM1 WILD-TYPE      7     19     21
D94V6, multiclass
        clus
vv       LRTM1 MUTATED LRTM1 WILD-TYPE
  CLUS_1             1               7
  CLUS_2             0              19
  CLUS_3             2              21
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LRTM1 MUTATED        1      1      1
  LRTM1 WILD-TYPE     20      8     19
D94V7, multiclass
        clus
vv       LRTM1 MUTATED LRTM1 WILD-TYPE
  CLUS_1             1              20
  CLUS_2             1               8
  CLUS_3             1              19
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LRTM1 MUTATED        1      2      0
  LRTM1 WILD-TYPE      8     20     19
D94V8, multiclass
        clus
vv       LRTM1 MUTATED LRTM1 WILD-TYPE
  CLUS_1             1               8
  CLUS_2             2              20
  CLUS_3             0              19

Clustering(95) Variable = TIMM50 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TIMM50 MUTATED        2      2      0
  TIMM50 WILD-TYPE     11     27     14
D95V1, multiclass
        clus
vv       TIMM50 MUTATED TIMM50 WILD-TYPE
  CLUS_1              2               11
  CLUS_2              2               27
  CLUS_3              0               14
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TIMM50 MUTATED        1      1      2
  TIMM50 WILD-TYPE     17     23     12
D95V2, multiclass
        clus
vv       TIMM50 MUTATED TIMM50 WILD-TYPE
  CLUS_1              1               17
  CLUS_2              1               23
  CLUS_3              2               12
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TIMM50 MUTATED        3      0      1      0
  TIMM50 WILD-TYPE     15     12      8      8
D95V3, multiclass
        clus
vv       TIMM50 MUTATED TIMM50 WILD-TYPE
  CLUS_1              3               15
  CLUS_2              0               12
  CLUS_3              1                8
  CLUS_4              0                8
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TIMM50 MUTATED        0      2      2
  TIMM50 WILD-TYPE      4     16     23
D95V4, multiclass
        clus
vv       TIMM50 MUTATED TIMM50 WILD-TYPE
  CLUS_1              0                4
  CLUS_2              2               16
  CLUS_3              2               23
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TIMM50 MUTATED        3      0      1
  TIMM50 WILD-TYPE     22     11     13
D95V5, multiclass
        clus
vv       TIMM50 MUTATED TIMM50 WILD-TYPE
  CLUS_1              3               22
  CLUS_2              0               11
  CLUS_3              1               13
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TIMM50 MUTATED        1      1      2
  TIMM50 WILD-TYPE      7     18     21
D95V6, multiclass
        clus
vv       TIMM50 MUTATED TIMM50 WILD-TYPE
  CLUS_1              1                7
  CLUS_2              1               18
  CLUS_3              2               21
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TIMM50 MUTATED        2      1      1
  TIMM50 WILD-TYPE     19      8     19
D95V7, multiclass
        clus
vv       TIMM50 MUTATED TIMM50 WILD-TYPE
  CLUS_1              2               19
  CLUS_2              1                8
  CLUS_3              1               19
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TIMM50 MUTATED        1      2      1
  TIMM50 WILD-TYPE      8     20     18
D95V8, multiclass
        clus
vv       TIMM50 MUTATED TIMM50 WILD-TYPE
  CLUS_1              1                8
  CLUS_2              2               20
  CLUS_3              1               18

Clustering(96) Variable = CCNK MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CCNK MUTATED        1      3      0
  CCNK WILD-TYPE     12     26     14
D96V1, multiclass
        clus
vv       CCNK MUTATED CCNK WILD-TYPE
  CLUS_1            1             12
  CLUS_2            3             26
  CLUS_3            0             14
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CCNK MUTATED        1      2      1
  CCNK WILD-TYPE     17     22     13
D96V2, multiclass
        clus
vv       CCNK MUTATED CCNK WILD-TYPE
  CLUS_1            1             17
  CLUS_2            2             22
  CLUS_3            1             13
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCNK MUTATED        2      0      2      0
  CCNK WILD-TYPE     16     12      7      8
D96V3, multiclass
        clus
vv       CCNK MUTATED CCNK WILD-TYPE
  CLUS_1            2             16
  CLUS_2            0             12
  CLUS_3            2              7
  CLUS_4            0              8
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CCNK MUTATED        0      2      2
  CCNK WILD-TYPE      4     16     23
D96V4, multiclass
        clus
vv       CCNK MUTATED CCNK WILD-TYPE
  CLUS_1            0              4
  CLUS_2            2             16
  CLUS_3            2             23
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CCNK MUTATED        2      0      2
  CCNK WILD-TYPE     23     11     12
D96V5, multiclass
        clus
vv       CCNK MUTATED CCNK WILD-TYPE
  CLUS_1            2             23
  CLUS_2            0             11
  CLUS_3            2             12
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CCNK MUTATED        1      2      1
  CCNK WILD-TYPE      7     17     22
D96V6, multiclass
        clus
vv       CCNK MUTATED CCNK WILD-TYPE
  CLUS_1            1              7
  CLUS_2            2             17
  CLUS_3            1             22
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CCNK MUTATED        1      1      2
  CCNK WILD-TYPE     20      8     18
D96V7, multiclass
        clus
vv       CCNK MUTATED CCNK WILD-TYPE
  CLUS_1            1             20
  CLUS_2            1              8
  CLUS_3            2             18
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CCNK MUTATED        1      1      2
  CCNK WILD-TYPE      8     21     17
D96V8, multiclass
        clus
vv       CCNK MUTATED CCNK WILD-TYPE
  CLUS_1            1              8
  CLUS_2            1             21
  CLUS_3            2             17

Clustering(97) Variable = TTK MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  TTK MUTATED        0      5      0
  TTK WILD-TYPE     13     24     14
D97V1, multiclass
        clus
vv       TTK MUTATED TTK WILD-TYPE
  CLUS_1           0            13
  CLUS_2           5            24
  CLUS_3           0            14
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  TTK MUTATED        0      3      2
  TTK WILD-TYPE     18     21     12
D97V2, multiclass
        clus
vv       TTK MUTATED TTK WILD-TYPE
  CLUS_1           0            18
  CLUS_2           3            21
  CLUS_3           2            12
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TTK MUTATED        1      1      2      1
  TTK WILD-TYPE     17     11      7      7
D97V3, multiclass
        clus
vv       TTK MUTATED TTK WILD-TYPE
  CLUS_1           1            17
  CLUS_2           1            11
  CLUS_3           2             7
  CLUS_4           1             7
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  TTK MUTATED        1      1      3
  TTK WILD-TYPE      3     17     22
D97V4, multiclass
        clus
vv       TTK MUTATED TTK WILD-TYPE
  CLUS_1           1             3
  CLUS_2           1            17
  CLUS_3           3            22
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  TTK MUTATED        2      1      2
  TTK WILD-TYPE     23     10     12
D97V5, multiclass
        clus
vv       TTK MUTATED TTK WILD-TYPE
  CLUS_1           2            23
  CLUS_2           1            10
  CLUS_3           2            12
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  TTK MUTATED        2      2      1
  TTK WILD-TYPE      6     17     22
D97V6, multiclass
        clus
vv       TTK MUTATED TTK WILD-TYPE
  CLUS_1           2             6
  CLUS_2           2            17
  CLUS_3           1            22
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  TTK MUTATED        0      2      3
  TTK WILD-TYPE     21      7     17
D97V7, multiclass
        clus
vv       TTK MUTATED TTK WILD-TYPE
  CLUS_1           0            21
  CLUS_2           2             7
  CLUS_3           3            17
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  TTK MUTATED        2      1      2
  TTK WILD-TYPE      7     21     17
D97V8, multiclass
        clus
vv       TTK MUTATED TTK WILD-TYPE
  CLUS_1           2             7
  CLUS_2           1            21
  CLUS_3           2            17

Clustering(98) Variable = TMEM175 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TMEM175 MUTATED        1      3      0
  TMEM175 WILD-TYPE     12     26     14
D98V1, multiclass
        clus
vv       TMEM175 MUTATED TMEM175 WILD-TYPE
  CLUS_1               1                12
  CLUS_2               3                26
  CLUS_3               0                14
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TMEM175 MUTATED        0      3      1
  TMEM175 WILD-TYPE     18     21     13
D98V2, multiclass
        clus
vv       TMEM175 MUTATED TMEM175 WILD-TYPE
  CLUS_1               0                18
  CLUS_2               3                21
  CLUS_3               1                13
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM175 MUTATED        1      2      1      0
  TMEM175 WILD-TYPE     17     10      8      8
D98V3, multiclass
        clus
vv       TMEM175 MUTATED TMEM175 WILD-TYPE
  CLUS_1               1                17
  CLUS_2               2                10
  CLUS_3               1                 8
  CLUS_4               0                 8
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TMEM175 MUTATED        0      1      3
  TMEM175 WILD-TYPE      4     17     22
D98V4, multiclass
        clus
vv       TMEM175 MUTATED TMEM175 WILD-TYPE
  CLUS_1               0                 4
  CLUS_2               1                17
  CLUS_3               3                22
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TMEM175 MUTATED        1      2      1
  TMEM175 WILD-TYPE     24      9     13
D98V5, multiclass
        clus
vv       TMEM175 MUTATED TMEM175 WILD-TYPE
  CLUS_1               1                24
  CLUS_2               2                 9
  CLUS_3               1                13
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TMEM175 MUTATED        0      4      0
  TMEM175 WILD-TYPE      8     15     23
D98V6, multiclass
        clus
vv       TMEM175 MUTATED TMEM175 WILD-TYPE
  CLUS_1               0                 8
  CLUS_2               4                15
  CLUS_3               0                23
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TMEM175 MUTATED        0      1      3
  TMEM175 WILD-TYPE     21      8     17
D98V7, multiclass
        clus
vv       TMEM175 MUTATED TMEM175 WILD-TYPE
  CLUS_1               0                21
  CLUS_2               1                 8
  CLUS_3               3                17
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TMEM175 MUTATED        0      0      4
  TMEM175 WILD-TYPE      9     22     15
D98V8, multiclass
        clus
vv       TMEM175 MUTATED TMEM175 WILD-TYPE
  CLUS_1               0                 9
  CLUS_2               0                22
  CLUS_3               4                15

Clustering(99) Variable = CD93 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CD93 MUTATED        1      3      1
  CD93 WILD-TYPE     12     26     13
D99V1, multiclass
        clus
vv       CD93 MUTATED CD93 WILD-TYPE
  CLUS_1            1             12
  CLUS_2            3             26
  CLUS_3            1             13
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CD93 MUTATED        1      0      4
  CD93 WILD-TYPE     17     24     10
D99V2, multiclass
        clus
vv       CD93 MUTATED CD93 WILD-TYPE
  CLUS_1            1             17
  CLUS_2            0             24
  CLUS_3            4             10
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CD93 MUTATED        3      0      1      1
  CD93 WILD-TYPE     15     12      8      7
D99V3, multiclass
        clus
vv       CD93 MUTATED CD93 WILD-TYPE
  CLUS_1            3             15
  CLUS_2            0             12
  CLUS_3            1              8
  CLUS_4            1              7
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CD93 MUTATED        1      3      1
  CD93 WILD-TYPE      3     15     24
D99V4, multiclass
        clus
vv       CD93 MUTATED CD93 WILD-TYPE
  CLUS_1            1              3
  CLUS_2            3             15
  CLUS_3            1             24
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CD93 MUTATED        4      0      1
  CD93 WILD-TYPE     21     11     13
D99V5, multiclass
        clus
vv       CD93 MUTATED CD93 WILD-TYPE
  CLUS_1            4             21
  CLUS_2            0             11
  CLUS_3            1             13
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CD93 MUTATED        0      2      3
  CD93 WILD-TYPE      8     17     20
D99V6, multiclass
        clus
vv       CD93 MUTATED CD93 WILD-TYPE
  CLUS_1            0              8
  CLUS_2            2             17
  CLUS_3            3             20
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CD93 MUTATED        2      2      1
  CD93 WILD-TYPE     19      7     19
D99V7, multiclass
        clus
vv       CD93 MUTATED CD93 WILD-TYPE
  CLUS_1            2             19
  CLUS_2            2              7
  CLUS_3            1             19
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CD93 MUTATED        1      2      2
  CD93 WILD-TYPE      8     20     17
D99V8, multiclass
        clus
vv       CD93 MUTATED CD93 WILD-TYPE
  CLUS_1            1              8
  CLUS_2            2             20
  CLUS_3            2             17

Clustering(100) Variable = C19ORF55 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C19ORF55 MUTATED        0      2      2
  C19ORF55 WILD-TYPE     13     27     12
D100V1, multiclass
        clus
vv       C19ORF55 MUTATED C19ORF55 WILD-TYPE
  CLUS_1                0                 13
  CLUS_2                2                 27
  CLUS_3                2                 12
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C19ORF55 MUTATED        1      0      3
  C19ORF55 WILD-TYPE     17     24     11
D100V2, multiclass
        clus
vv       C19ORF55 MUTATED C19ORF55 WILD-TYPE
  CLUS_1                1                 17
  CLUS_2                0                 24
  CLUS_3                3                 11
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C19ORF55 MUTATED        2      1      0      0
  C19ORF55 WILD-TYPE     16     11      9      8
D100V3, multiclass
        clus
vv       C19ORF55 MUTATED C19ORF55 WILD-TYPE
  CLUS_1                2                 16
  CLUS_2                1                 11
  CLUS_3                0                  9
  CLUS_4                0                  8
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C19ORF55 MUTATED        0      2      1
  C19ORF55 WILD-TYPE      4     16     24
D100V4, multiclass
        clus
vv       C19ORF55 MUTATED C19ORF55 WILD-TYPE
  CLUS_1                0                  4
  CLUS_2                2                 16
  CLUS_3                1                 24
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C19ORF55 MUTATED        3      1      0
  C19ORF55 WILD-TYPE     22     10     14
D100V5, multiclass
        clus
vv       C19ORF55 MUTATED C19ORF55 WILD-TYPE
  CLUS_1                3                 22
  CLUS_2                1                 10
  CLUS_3                0                 14
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C19ORF55 MUTATED        0      2      2
  C19ORF55 WILD-TYPE      8     17     21
D100V6, multiclass
        clus
vv       C19ORF55 MUTATED C19ORF55 WILD-TYPE
  CLUS_1                0                  8
  CLUS_2                2                 17
  CLUS_3                2                 21
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C19ORF55 MUTATED        2      1      1
  C19ORF55 WILD-TYPE     19      8     19
D100V7, multiclass
        clus
vv       C19ORF55 MUTATED C19ORF55 WILD-TYPE
  CLUS_1                2                 19
  CLUS_2                1                  8
  CLUS_3                1                 19
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C19ORF55 MUTATED        0      2      2
  C19ORF55 WILD-TYPE      9     20     17
D100V8, multiclass
        clus
vv       C19ORF55 MUTATED C19ORF55 WILD-TYPE
  CLUS_1                0                  9
  CLUS_2                2                 20
  CLUS_3                2                 17

Clustering(101) Variable = MRPL48 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MRPL48 MUTATED        0      2      1
  MRPL48 WILD-TYPE     13     27     13
D101V1, multiclass
        clus
vv       MRPL48 MUTATED MRPL48 WILD-TYPE
  CLUS_1              0               13
  CLUS_2              2               27
  CLUS_3              1               13
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MRPL48 MUTATED        0      2      1
  MRPL48 WILD-TYPE     18     22     13
D101V2, multiclass
        clus
vv       MRPL48 MUTATED MRPL48 WILD-TYPE
  CLUS_1              0               18
  CLUS_2              2               22
  CLUS_3              1               13
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MRPL48 MUTATED        1      1      1      0
  MRPL48 WILD-TYPE     17     11      8      8
D101V3, multiclass
        clus
vv       MRPL48 MUTATED MRPL48 WILD-TYPE
  CLUS_1              1               17
  CLUS_2              1               11
  CLUS_3              1                8
  CLUS_4              0                8
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MRPL48 MUTATED        0      1      2
  MRPL48 WILD-TYPE      4     17     23
D101V4, multiclass
        clus
vv       MRPL48 MUTATED MRPL48 WILD-TYPE
  CLUS_1              0                4
  CLUS_2              1               17
  CLUS_3              2               23
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MRPL48 MUTATED        1      1      1
  MRPL48 WILD-TYPE     24     10     13
D101V5, multiclass
        clus
vv       MRPL48 MUTATED MRPL48 WILD-TYPE
  CLUS_1              1               24
  CLUS_2              1               10
  CLUS_3              1               13
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MRPL48 MUTATED        0      3      0
  MRPL48 WILD-TYPE      8     16     23
D101V6, multiclass
        clus
vv       MRPL48 MUTATED MRPL48 WILD-TYPE
  CLUS_1              0                8
  CLUS_2              3               16
  CLUS_3              0               23
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MRPL48 MUTATED        0      2      1
  MRPL48 WILD-TYPE     21      7     19
D101V7, multiclass
        clus
vv       MRPL48 MUTATED MRPL48 WILD-TYPE
  CLUS_1              0               21
  CLUS_2              2                7
  CLUS_3              1               19
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MRPL48 MUTATED        0      0      3
  MRPL48 WILD-TYPE      9     22     16
D101V8, multiclass
        clus
vv       MRPL48 MUTATED MRPL48 WILD-TYPE
  CLUS_1              0                9
  CLUS_2              0               22
  CLUS_3              3               16

Clustering(102) Variable = PVRL1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PVRL1 MUTATED        1      4      0
  PVRL1 WILD-TYPE     12     25     14
D102V1, multiclass
        clus
vv       PVRL1 MUTATED PVRL1 WILD-TYPE
  CLUS_1             1              12
  CLUS_2             4              25
  CLUS_3             0              14
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PVRL1 MUTATED        1      3      1
  PVRL1 WILD-TYPE     17     21     13
D102V2, multiclass
        clus
vv       PVRL1 MUTATED PVRL1 WILD-TYPE
  CLUS_1             1              17
  CLUS_2             3              21
  CLUS_3             1              13
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PVRL1 MUTATED        2      0      3      0
  PVRL1 WILD-TYPE     16     12      6      8
D102V3, multiclass
        clus
vv       PVRL1 MUTATED PVRL1 WILD-TYPE
  CLUS_1             2              16
  CLUS_2             0              12
  CLUS_3             3               6
  CLUS_4             0               8
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PVRL1 MUTATED        0      2      3
  PVRL1 WILD-TYPE      4     16     22
D102V4, multiclass
        clus
vv       PVRL1 MUTATED PVRL1 WILD-TYPE
  CLUS_1             0               4
  CLUS_2             2              16
  CLUS_3             3              22
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PVRL1 MUTATED        2      0      3
  PVRL1 WILD-TYPE     23     11     11
D102V5, multiclass
        clus
vv       PVRL1 MUTATED PVRL1 WILD-TYPE
  CLUS_1             2              23
  CLUS_2             0              11
  CLUS_3             3              11
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PVRL1 MUTATED        1      3      1
  PVRL1 WILD-TYPE      7     16     22
D102V6, multiclass
        clus
vv       PVRL1 MUTATED PVRL1 WILD-TYPE
  CLUS_1             1               7
  CLUS_2             3              16
  CLUS_3             1              22
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PVRL1 MUTATED        1      1      3
  PVRL1 WILD-TYPE     20      8     17
D102V7, multiclass
        clus
vv       PVRL1 MUTATED PVRL1 WILD-TYPE
  CLUS_1             1              20
  CLUS_2             1               8
  CLUS_3             3              17
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PVRL1 MUTATED        1      1      3
  PVRL1 WILD-TYPE      8     21     16
D102V8, multiclass
        clus
vv       PVRL1 MUTATED PVRL1 WILD-TYPE
  CLUS_1             1               8
  CLUS_2             1              21
  CLUS_3             3              16

Clustering(103) Variable = ACIN1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ACIN1 MUTATED        0      2      1
  ACIN1 WILD-TYPE     13     27     13
D103V1, multiclass
        clus
vv       ACIN1 MUTATED ACIN1 WILD-TYPE
  CLUS_1             0              13
  CLUS_2             2              27
  CLUS_3             1              13
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ACIN1 MUTATED        0      1      2
  ACIN1 WILD-TYPE     18     23     12
D103V2, multiclass
        clus
vv       ACIN1 MUTATED ACIN1 WILD-TYPE
  CLUS_1             0              18
  CLUS_2             1              23
  CLUS_3             2              12
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACIN1 MUTATED        1      1      0      0
  ACIN1 WILD-TYPE     17     11      9      8
D103V3, multiclass
[1] "Remove cluster labels:" "ACIN1 MUTATED"         
clus
  ACIN1 MUTATED ACIN1 WILD-TYPE 
              2              45 
     TCGA-F2-6879      TCGA-F2-7273      TCGA-F2-7276      TCGA-F2-A44G 
"ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" 
     TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A545 
"ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-HV-A5A3      TCGA-HV-A5A4      TCGA-HV-A5A5 
"ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" 
     TCGA-HV-A5A6      TCGA-HZ-7918      TCGA-HZ-7920      TCGA-HZ-7922 
"ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" 
     TCGA-HZ-7923      TCGA-HZ-7924      TCGA-HZ-7925      TCGA-HZ-7926 
"ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" 
     TCGA-HZ-8001      TCGA-HZ-8003      TCGA-HZ-8315      TCGA-HZ-8636 
"ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" 
     TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H      TCGA-HZ-A4BH 
"ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" 
     TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645      TCGA-IB-7646 
"ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" 
     TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7652      TCGA-IB-7654 
"ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" 
     TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887      TCGA-IB-7889 
"ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" 
     TCGA-IB-7890      TCGA-IB-7891      TCGA-IB-7893      TCGA-IB-7897 
"ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" 
     TCGA-M8-A5N4 
"ACIN1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ACIN1 MUTATED        0      1      1
  ACIN1 WILD-TYPE      4     17     24
D103V4, multiclass
[1] "Remove cluster labels:" "ACIN1 MUTATED"         
clus
  ACIN1 MUTATED ACIN1 WILD-TYPE 
              2              45 
     TCGA-F2-6879      TCGA-F2-7273      TCGA-F2-7276      TCGA-F2-A44G 
"ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" 
     TCGA-F2-A44H      TCGA-FB-A4P5      TCGA-FB-A4P6      TCGA-FB-A545 
"ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" 
     TCGA-H6-A45N      TCGA-HV-A5A3      TCGA-HV-A5A4      TCGA-HV-A5A5 
"ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" 
     TCGA-HV-A5A6      TCGA-HZ-7918      TCGA-HZ-7920      TCGA-HZ-7922 
"ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" 
     TCGA-HZ-7923      TCGA-HZ-7924      TCGA-HZ-7925      TCGA-HZ-7926 
"ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" 
     TCGA-HZ-8001      TCGA-HZ-8003      TCGA-HZ-8315      TCGA-HZ-8636 
"ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" 
     TCGA-HZ-8638      TCGA-HZ-A49G      TCGA-HZ-A49H      TCGA-HZ-A4BH 
"ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" 
     TCGA-HZ-A4BK      TCGA-IB-7644      TCGA-IB-7645      TCGA-IB-7646 
"ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" 
     TCGA-IB-7647      TCGA-IB-7649      TCGA-IB-7652      TCGA-IB-7654 
"ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" 
     TCGA-IB-7885      TCGA-IB-7886      TCGA-IB-7887      TCGA-IB-7889 
"ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" 
     TCGA-IB-7890      TCGA-IB-7891      TCGA-IB-7893      TCGA-IB-7897 
"ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" "ACIN1 WILD-TYPE" 
     TCGA-M8-A5N4 
"ACIN1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ACIN1 MUTATED        2      1      0
  ACIN1 WILD-TYPE     23     10     14
D103V5, multiclass
        clus
vv       ACIN1 MUTATED ACIN1 WILD-TYPE
  CLUS_1             2              23
  CLUS_2             1              10
  CLUS_3             0              14
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ACIN1 MUTATED        0      2      1
  ACIN1 WILD-TYPE      8     17     22
D103V6, multiclass
        clus
vv       ACIN1 MUTATED ACIN1 WILD-TYPE
  CLUS_1             0               8
  CLUS_2             2              17
  CLUS_3             1              22
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ACIN1 MUTATED        1      1      1
  ACIN1 WILD-TYPE     20      8     19
D103V7, multiclass
        clus
vv       ACIN1 MUTATED ACIN1 WILD-TYPE
  CLUS_1             1              20
  CLUS_2             1               8
  CLUS_3             1              19
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ACIN1 MUTATED        0      1      2
  ACIN1 WILD-TYPE      9     21     17
D103V8, multiclass
        clus
vv       ACIN1 MUTATED ACIN1 WILD-TYPE
  CLUS_1             0               9
  CLUS_2             1              21
  CLUS_3             2              17

Clustering(104) Variable = MAML3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MAML3 MUTATED        2      4      1
  MAML3 WILD-TYPE     11     25     13
D104V1, multiclass
        clus
vv       MAML3 MUTATED MAML3 WILD-TYPE
  CLUS_1             2              11
  CLUS_2             4              25
  CLUS_3             1              13
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MAML3 MUTATED        1      2      4
  MAML3 WILD-TYPE     17     22     10
D104V2, multiclass
        clus
vv       MAML3 MUTATED MAML3 WILD-TYPE
  CLUS_1             1              17
  CLUS_2             2              22
  CLUS_3             4              10
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAML3 MUTATED        4      1      2      0
  MAML3 WILD-TYPE     14     11      7      8
D104V3, multiclass
        clus
vv       MAML3 MUTATED MAML3 WILD-TYPE
  CLUS_1             4              14
  CLUS_2             1              11
  CLUS_3             2               7
  CLUS_4             0               8
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MAML3 MUTATED        0      4      3
  MAML3 WILD-TYPE      4     14     22
D104V4, multiclass
        clus
vv       MAML3 MUTATED MAML3 WILD-TYPE
  CLUS_1             0               4
  CLUS_2             4              14
  CLUS_3             3              22
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MAML3 MUTATED        4      0      3
  MAML3 WILD-TYPE     21     11     11
D104V5, multiclass
        clus
vv       MAML3 MUTATED MAML3 WILD-TYPE
  CLUS_1             4              21
  CLUS_2             0              11
  CLUS_3             3              11
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MAML3 MUTATED        0      3      4
  MAML3 WILD-TYPE      8     16     19
D104V6, multiclass
        clus
vv       MAML3 MUTATED MAML3 WILD-TYPE
  CLUS_1             0               8
  CLUS_2             3              16
  CLUS_3             4              19
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MAML3 MUTATED        3      1      3
  MAML3 WILD-TYPE     18      8     17
D104V7, multiclass
        clus
vv       MAML3 MUTATED MAML3 WILD-TYPE
  CLUS_1             3              18
  CLUS_2             1               8
  CLUS_3             3              17
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MAML3 MUTATED        1      3      3
  MAML3 WILD-TYPE      8     19     16
D104V8, multiclass
        clus
vv       MAML3 MUTATED MAML3 WILD-TYPE
  CLUS_1             1               8
  CLUS_2             3              19
  CLUS_3             3              16

Clustering(105) Variable = EDC4 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EDC4 MUTATED        1      3      1
  EDC4 WILD-TYPE     12     26     13
D105V1, multiclass
        clus
vv       EDC4 MUTATED EDC4 WILD-TYPE
  CLUS_1            1             12
  CLUS_2            3             26
  CLUS_3            1             13
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EDC4 MUTATED        1      2      2
  EDC4 WILD-TYPE     17     22     12
D105V2, multiclass
        clus
vv       EDC4 MUTATED EDC4 WILD-TYPE
  CLUS_1            1             17
  CLUS_2            2             22
  CLUS_3            2             12
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EDC4 MUTATED        2      0      0      1
  EDC4 WILD-TYPE     16     12      9      7
D105V3, multiclass
        clus
vv       EDC4 MUTATED EDC4 WILD-TYPE
  CLUS_1            2             16
  CLUS_2            0             12
  CLUS_3            0              9
  CLUS_4            1              7
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EDC4 MUTATED        0      2      1
  EDC4 WILD-TYPE      4     16     24
D105V4, multiclass
        clus
vv       EDC4 MUTATED EDC4 WILD-TYPE
  CLUS_1            0              4
  CLUS_2            2             16
  CLUS_3            1             24
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EDC4 MUTATED        3      1      1
  EDC4 WILD-TYPE     22     10     13
D105V5, multiclass
        clus
vv       EDC4 MUTATED EDC4 WILD-TYPE
  CLUS_1            3             22
  CLUS_2            1             10
  CLUS_3            1             13
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EDC4 MUTATED        1      2      2
  EDC4 WILD-TYPE      7     17     21
D105V6, multiclass
        clus
vv       EDC4 MUTATED EDC4 WILD-TYPE
  CLUS_1            1              7
  CLUS_2            2             17
  CLUS_3            2             21
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EDC4 MUTATED        2      2      1
  EDC4 WILD-TYPE     19      7     19
D105V7, multiclass
        clus
vv       EDC4 MUTATED EDC4 WILD-TYPE
  CLUS_1            2             19
  CLUS_2            2              7
  CLUS_3            1             19
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EDC4 MUTATED        1      2      2
  EDC4 WILD-TYPE      8     20     17
D105V8, multiclass
        clus
vv       EDC4 MUTATED EDC4 WILD-TYPE
  CLUS_1            1              8
  CLUS_2            2             20
  CLUS_3            2             17

Clustering(106) Variable = SETD1A MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SETD1A MUTATED        1      2      0
  SETD1A WILD-TYPE     12     27     14
D106V1, multiclass
        clus
vv       SETD1A MUTATED SETD1A WILD-TYPE
  CLUS_1              1               12
  CLUS_2              2               27
  CLUS_3              0               14
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SETD1A MUTATED        1      1      1
  SETD1A WILD-TYPE     17     23     13
D106V2, multiclass
        clus
vv       SETD1A MUTATED SETD1A WILD-TYPE
  CLUS_1              1               17
  CLUS_2              1               23
  CLUS_3              1               13
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SETD1A MUTATED        1      1      1      0
  SETD1A WILD-TYPE     17     11      8      8
D106V3, multiclass
        clus
vv       SETD1A MUTATED SETD1A WILD-TYPE
  CLUS_1              1               17
  CLUS_2              1               11
  CLUS_3              1                8
  CLUS_4              0                8
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SETD1A MUTATED        0      1      2
  SETD1A WILD-TYPE      4     17     23
D106V4, multiclass
        clus
vv       SETD1A MUTATED SETD1A WILD-TYPE
  CLUS_1              0                4
  CLUS_2              1               17
  CLUS_3              2               23
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SETD1A MUTATED        1      1      1
  SETD1A WILD-TYPE     24     10     13
D106V5, multiclass
        clus
vv       SETD1A MUTATED SETD1A WILD-TYPE
  CLUS_1              1               24
  CLUS_2              1               10
  CLUS_3              1               13
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SETD1A MUTATED        0      1      2
  SETD1A WILD-TYPE      8     18     21
D106V6, multiclass
        clus
vv       SETD1A MUTATED SETD1A WILD-TYPE
  CLUS_1              0                8
  CLUS_2              1               18
  CLUS_3              2               21
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SETD1A MUTATED        1      1      1
  SETD1A WILD-TYPE     20      8     19
D106V7, multiclass
        clus
vv       SETD1A MUTATED SETD1A WILD-TYPE
  CLUS_1              1               20
  CLUS_2              1                8
  CLUS_3              1               19
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SETD1A MUTATED        1      1      1
  SETD1A WILD-TYPE      8     21     18
D106V8, multiclass
        clus
vv       SETD1A MUTATED SETD1A WILD-TYPE
  CLUS_1              1                8
  CLUS_2              1               21
  CLUS_3              1               18
> q(save="no")
