
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/13/Correlate_Genomic_Events.R")
> result <- main("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/13/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-tTRUE", "-iD=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/PRAD-TP/6159714/PRAD-TP.mergedcluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/Append_Data/PRAD-TP/6154773/PRAD-TP.merged_data.txt", "-fF=", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=.05", "-cQ=0.25", "-MF=ALL", "-oT=PRAD-TP", "-nV=Nozzle.R1", "-OP=AGGREGRATED_CLUSTER", "-iT=", "-iX=")
[1] "terrence_modification_tag"
[1] TRUE
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"         "-oT=PRAD-TP"
[1] "opt"                     "-OP=AGGREGRATED_CLUSTER"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"                 "AGGREGRATED_CLUSTER"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/Append_Data/PRAD-TP/6154773/PRAD-TP.merged_data.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/PRAD-TP/6159714/PRAD-TP.mergedcluster.txt"

nPatients in clinical file=186, in cluster file=300, common to both=185
[1]  10 185
[1] "CN_CNMF"
[1] 3
 1  2  3 
31 98 55 
 1  2  3 
31 98 55 
[1] "METHLYATION_CNMF"
[1] 3
 1  2  3 
52 63 70 
 1  2  3 
52 63 70 
[1] "RPPA_CNMF"
[1] 3
 1  2  3 
41 50 52 
 1  2  3 
41 50 52 
[1] "RPPA_CHIERARCHICAL"
[1] 3
 1  2  3 
50 53 40 
 1  2  3 
50 53 40 
[1] "MRNASEQ_CNMF"
[1] 3
 1  2  3  4 
38 63 46 38 
 1  2  3  4 
38 63 46 38 
[1] "MRNASEQ_CHIERARCHICAL"
[1] 3
 1  2  3  4 
69 61 46  9 
 1  2  3  4 
69 61 46  9 
[1] "MIRSEQ_CNMF"
[1] 3
 1  2  3  4  5 
66 21 10 15 67 
 1  2  3  4  5 
66 21 10 15 67 
[1] "MIRSEQ_CHIERARCHICAL"
[1] 3
 1  2  3 
68 96 15 
 1  2  3 
68 96 15 
[1] "MIRSEQ_MATURE_CNMF"
[1] 3
 1  2  3 
82 79 18 
 1  2  3 
82 79 18 
[1] "MIRSEQ_MATURE_CHIERARCHICAL"
[1] 3
 1  2  3 
80 81 18 
 1  2  3 
80 81 18 
[1] "terrence_modification_tag"
[1] TRUE
[1] "data2feature, selection="
 [1] "YEARSTOBIRTH"                          
 [2] "VITALSTATUS"                           
 [3] "DAYSTODEATH"                           
 [4] "DAYSTOLASTFOLLOWUP"                    
 [5] "PRIMARYSITEOFDESEASE"                  
 [6] "NEOPLASM.DISEASESTAGE"                 
 [7] "PATHOLOGY.T.STAGE"                     
 [8] "PATHOLOGY.N.STAGE"                     
 [9] "PATHOLOGY.M.STAGE"                     
[10] "DCCUPLOADDATE"                         
[11] "GENDER"                                
[12] "DATEOFINITIALPATHOLOGICDIAGNOSIS"      
[13] "RADIATIONTHERAPY"                      
[14] "HISTOLOGICALTYPE"                      
[15] "RADIATIONS.RADIATION.REGIMENINDICATION"
[16] "COMPLETENESS.OF.RESECTION"             
[17] "NUMBER.OF.LYMPH.NODES"                 
[18] "GLEASON_SCORE_COMBINED"                
[19] "GLEASON_SCORE_PRIMARY"                 
[20] "GLEASON_SCORE_SECONDARY"               
[21] "HIGHEST_GLEASON_SCORE"                 
[22] "GLEASON_SCORE"                         
[23] "PSA_RESULT_PREOP"                      
[24] "DAYS_TO_PREOP_PSA"                     
[25] "PSA_VALUE"                             
[26] "DAYS_TO_PSA"                           
[27] "BATCHNUMBER"                           

Input Data has 27 rows and 185 columns.

[1] "Batch" "27"   
[1] "Last Follow UP"
TCGA-CH-5737 TCGA-CH-5738 TCGA-CH-5739 TCGA-CH-5740 TCGA-CH-5741 TCGA-CH-5743 
          91          212          671           31          395          424 
TCGA-CH-5744 TCGA-CH-5745 TCGA-CH-5746 TCGA-CH-5748 TCGA-CH-5750 TCGA-CH-5751 
          60           91          731           31          395         1065 
TCGA-CH-5752 TCGA-CH-5753 TCGA-CH-5754 TCGA-CH-5761 TCGA-CH-5762 TCGA-CH-5763 
         942           31           62           28         1339          365 
TCGA-CH-5764 TCGA-CH-5765 TCGA-CH-5766 TCGA-CH-5767 TCGA-CH-5768 TCGA-CH-5769 
          31          700           31          458          731           62 
TCGA-CH-5771 TCGA-CH-5772 TCGA-CH-5788 TCGA-CH-5789 TCGA-CH-5790 TCGA-CH-5791 
         395          485          820          303          974         1004 
TCGA-CH-5792 TCGA-CH-5794 TCGA-EJ-5494 TCGA-EJ-5495 TCGA-EJ-5496 TCGA-EJ-5497 
          91          881          825         1006          594          396 
TCGA-EJ-5498 TCGA-EJ-5499 TCGA-EJ-5501 TCGA-EJ-5502 TCGA-EJ-5503 TCGA-EJ-5504 
         905          532          936          244          716          880 
TCGA-EJ-5505 TCGA-EJ-5506 TCGA-EJ-5507 TCGA-EJ-5508 TCGA-EJ-5509 TCGA-EJ-5510 
         921          827          727         1184         1096         1115 
TCGA-EJ-5511 TCGA-EJ-5512 TCGA-EJ-5514 TCGA-EJ-5515 TCGA-EJ-5516 TCGA-EJ-5517 
         974         1172         1102         1240         1416         1454 
TCGA-EJ-5518 TCGA-EJ-5519 TCGA-EJ-5521 TCGA-EJ-5522 TCGA-EJ-5524 TCGA-EJ-5525 
        1590         1335         1578         1462         1310         1115 
TCGA-EJ-5526 TCGA-EJ-5527 TCGA-EJ-5530 TCGA-EJ-5531 TCGA-EJ-5532 TCGA-EJ-5542 
        1179         1209         1272          920         1461          884 
TCGA-EJ-7115 TCGA-EJ-7123 TCGA-EJ-7125 TCGA-EJ-7314 TCGA-EJ-7315 TCGA-EJ-7317 
         821         1490         1860          295          289          285 
TCGA-EJ-7321 TCGA-EJ-7327 TCGA-EJ-7328 TCGA-EJ-7330 TCGA-EJ-7331 TCGA-EJ-7781 
         233          175          170          191            9          169 
TCGA-EJ-7782 TCGA-EJ-7783 TCGA-EJ-7784 TCGA-EJ-7785 TCGA-EJ-7786 TCGA-EJ-7788 
          64          131          167          258          442           52 
TCGA-EJ-7789 TCGA-EJ-7791 TCGA-EJ-7792 TCGA-EJ-7793 TCGA-EJ-7794 TCGA-EJ-7797 
         552          596          526           43          700          369 
TCGA-EJ-8469 TCGA-EJ-8470 TCGA-EJ-8472 TCGA-EJ-8474 TCGA-EJ-A46B TCGA-EJ-A46D 
        1946          821           NA          314          162          128 
TCGA-EJ-A46E TCGA-EJ-A46F TCGA-EJ-A46H TCGA-EJ-A46I TCGA-FC-7708 TCGA-FC-7961 
         519          299          228          672           32           70 
TCGA-FC-A5OB TCGA-FC-A66V TCGA-FC-A6HD TCGA-G9-6329 TCGA-G9-6332 TCGA-G9-6333 
         273          122           54         1266         2657         2465 
TCGA-G9-6336 TCGA-G9-6338 TCGA-G9-6342 TCGA-G9-6343 TCGA-G9-6348 TCGA-G9-6351 
        2068         2028         1696          554         1515         1403 
TCGA-G9-6353 TCGA-G9-6356 TCGA-G9-6361 TCGA-G9-6362 TCGA-G9-6363 TCGA-G9-6364 
        1541         1434         1415         1443         1378         1198 
TCGA-G9-6365 TCGA-G9-6366 TCGA-G9-6367 TCGA-G9-6369 TCGA-G9-6370 TCGA-G9-6371 
        1363          101         1222         1215         1156         1226 
TCGA-G9-6373 TCGA-G9-6377 TCGA-G9-6378 TCGA-G9-6384 TCGA-G9-6385 TCGA-G9-6494 
         811          958         1155          765          830         1771 
TCGA-G9-6496 TCGA-G9-6499 TCGA-G9-7510 TCGA-G9-7519 TCGA-G9-7521 TCGA-G9-7522 
        1726         1543         1185          849          486          648 
TCGA-G9-7523 TCGA-G9-7525 TCGA-H9-7775 TCGA-HC-7075 TCGA-HC-7077 TCGA-HC-7078 
         856          512          184           61           NA          162 
TCGA-HC-7079 TCGA-HC-7080 TCGA-HC-7209 TCGA-HC-7211 TCGA-HC-7212 TCGA-HC-7213 
          89           61           31           30          881           60 
TCGA-HC-7230 TCGA-HC-7231 TCGA-HC-7233 TCGA-HC-7736 TCGA-HC-7737 TCGA-HC-7740 
          51           72           52           30           63           53 
TCGA-HC-7742 TCGA-HC-7744 TCGA-HC-7747 TCGA-HC-7748 TCGA-HC-7749 TCGA-HC-7750 
          45           51           57          792           61           34 
TCGA-HC-7752 TCGA-HC-7817 TCGA-HC-7818 TCGA-HC-7821 TCGA-HC-8216 TCGA-HC-8265 
          98           32           45           56          682          486 
TCGA-HC-A48F TCGA-HC-A4ZV TCGA-HC-A6AL TCGA-HC-A6AS TCGA-HC-A6HX TCGA-HI-7168 
          46           23           67           44           37         2391 
TCGA-HI-7169 TCGA-HI-7170 TCGA-HI-7171 TCGA-J4-8198 TCGA-J4-8200 TCGA-J4-A67N 
        1949         1899           NA           98          374          502 
TCGA-M7-A71Y TCGA-M7-A71Z TCGA-M7-A720 TCGA-M7-A721 TCGA-M7-A724 
         157          209          302          204          483 
Variable 1:'AGE':	nDistinctValues=31,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=TRUE.
Variable 3:'DAYSTODEATH':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 4:'DAYSTOLASTFOLLOWUP':	nDistinctValues=156,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 5:'PRIMARY.SITE.OF.DISEASE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 6:'NEOPLASM.DISEASESTAGE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 7:'PATHOLOGY.T.STAGE':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'PATHOLOGY.N.STAGE':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'PATHOLOGY.M.STAGE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 10:'DCCUPLOADDAY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 11:'GENDER':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 12:'DAYOFINITIALPATHOLOGICDIAGNOSIS':	nDistinctValues=9,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 13:'RADIATION.THERAPY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 14:'HISTOLOGICAL.TYPE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 15:'RADIATIONS.RADIATION.REGIMENINDICATION':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 16:'COMPLETENESS.OF.RESECTION':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 17:'NUMBER.OF.LYMPH.NODES':	nDistinctValues=7,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 18:'GLEASON_SCORE_COMBINED':	nDistinctValues=5,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 19:'GLEASON_SCORE_PRIMARY':	nDistinctValues=4,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 20:'GLEASON_SCORE_SECONDARY':	nDistinctValues=3,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 21:'HIGHEST_GLEASON_SCORE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 22:'GLEASON_SCORE':	nDistinctValues=5,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 23:'PSA_RESULT_PREOP':	nDistinctValues=116,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 24:'DAYS_TO_PREOP_PSA':	nDistinctValues=91,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 25:'PSA_VALUE':	nDistinctValues=52,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 26:'DAYS_TO_PSA':	nDistinctValues=150,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 27:'BATCH.NUMBER':	nDistinctValues=18,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
 [1] "AGE"                       "PATHOLOGY.T.STAGE"        
 [3] "PATHOLOGY.N.STAGE"         "COMPLETENESS.OF.RESECTION"
 [5] "NUMBER.OF.LYMPH.NODES"     "GLEASON_SCORE_COMBINED"   
 [7] "GLEASON_SCORE_PRIMARY"     "GLEASON_SCORE_SECONDARY"  
 [9] "GLEASON_SCORE"             "PSA_RESULT_PREOP"         
[11] "DAYS_TO_PREOP_PSA"         "PSA_VALUE"                
[13] "DAYS_TO_PSA"              
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T" "2"          
[1] "PATHOLOGY.N" "3"          
Output Data has 185 columns, 1 survival variables, and 13 non-survival variables.
AGE, nv=31, binary=FALSE, numeric=TRUE
PATHOLOGY.T.STAGE, nv=3, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.T',vnm)"
vv
T2 T3 T4 
80 98  5 
[1] "table(vv)"
vv
T2 T3 T4 
80 98  5 
$ClinVariableName
[1] "PATHOLOGY.T.STAGE"

$Table
vv
T2 T3 T4 
80 98  5 

$nClasses
[1] 3

$ClinVariableType
[1] "multiclass(3)"


T2 T3 T4 
80 98  5 
PATHOLOGY.N.STAGE, nv=2, binary=FALSE, numeric=TRUE
COMPLETENESS.OF.RESECTION, nv=3, binary=FALSE, numeric=FALSE
NUMBER.OF.LYMPH.NODES, nv=7, binary=FALSE, numeric=TRUE
GLEASON_SCORE_COMBINED, nv=5, binary=FALSE, numeric=TRUE
GLEASON_SCORE_PRIMARY, nv=4, binary=FALSE, numeric=TRUE
GLEASON_SCORE_SECONDARY, nv=3, binary=FALSE, numeric=TRUE
GLEASON_SCORE, nv=5, binary=FALSE, numeric=TRUE
PSA_RESULT_PREOP, nv=116, binary=FALSE, numeric=TRUE
DAYS_TO_PREOP_PSA, nv=91, binary=FALSE, numeric=TRUE
PSA_VALUE, nv=52, binary=FALSE, numeric=TRUE
DAYS_TO_PSA, nv=150, binary=FALSE, numeric=TRUE

Clustering(1) Variable = CN_CNMF
D1V1, survival
          sevent
clus2       0  1
  subtype1 31  0
  subtype2 98  0
  subtype3 54  1
subtype1 subtype2 subtype3 
      31       98       55 
subtype1 subtype2 subtype3 
       0        0        1 
$subtype1
TCGA-CH-5737 TCGA-CH-5740 TCGA-CH-5748 TCGA-CH-5767 TCGA-CH-5772 TCGA-CH-5792 
        2.99         1.02         1.02        15.06        15.95         2.99 
TCGA-EJ-5504 TCGA-EJ-5505 TCGA-EJ-5509 TCGA-EJ-5516 TCGA-EJ-5531 TCGA-EJ-7125 
       28.93        30.28        36.03        46.55        30.25        61.15 
TCGA-EJ-7317 TCGA-EJ-7331 TCGA-EJ-7782 TCGA-EJ-7786 TCGA-EJ-7794 TCGA-FC-7961 
        9.37         0.30         2.10        14.53        23.01         2.30 
TCGA-FC-A5OB TCGA-G9-6329 TCGA-G9-6348 TCGA-G9-6365 TCGA-G9-6378 TCGA-G9-6496 
        8.98        41.62        49.81        44.81        37.97        56.75 
TCGA-HC-7080 TCGA-HC-7736 TCGA-HC-7737 TCGA-HC-7744 TCGA-HC-A6AS TCGA-J4-8198 
        2.01         0.99         2.07         1.68         1.45         3.22 
TCGA-M7-A721 
        6.71 

$subtype2
TCGA-CH-5738 TCGA-CH-5741 TCGA-CH-5743 TCGA-CH-5744 TCGA-CH-5746 TCGA-CH-5750 
        6.97        12.99        13.94         1.97        24.03        12.99 
TCGA-CH-5752 TCGA-CH-5763 TCGA-CH-5765 TCGA-CH-5768 TCGA-CH-5769 TCGA-CH-5771 
       30.97        12.00        23.01        24.03         2.04        12.99 
TCGA-CH-5789 TCGA-CH-5790 TCGA-CH-5794 TCGA-EJ-5494 TCGA-EJ-5496 TCGA-EJ-5497 
        9.96        32.02        28.96        27.12        19.53        13.02 
TCGA-EJ-5498 TCGA-EJ-5499 TCGA-EJ-5501 TCGA-EJ-5502 TCGA-EJ-5503 TCGA-EJ-5506 
       29.75        17.49        30.77         8.02        23.54        27.19 
TCGA-EJ-5508 TCGA-EJ-5510 TCGA-EJ-5512 TCGA-EJ-5515 TCGA-EJ-5517 TCGA-EJ-5519 
       38.93        36.66        38.53        40.77        47.80        43.89 
TCGA-EJ-5522 TCGA-EJ-5530 TCGA-EJ-5532 TCGA-EJ-5542 TCGA-EJ-7115 TCGA-EJ-7314 
       48.07        41.82        48.03        29.06        26.99         9.70 
TCGA-EJ-7321 TCGA-EJ-7327 TCGA-EJ-7328 TCGA-EJ-7783 TCGA-EJ-7785 TCGA-EJ-7788 
        7.66         5.75         5.59         4.31         8.48         1.71 
TCGA-EJ-7791 TCGA-EJ-7792 TCGA-EJ-7793 TCGA-EJ-7797 TCGA-EJ-8474 TCGA-EJ-A46B 
       19.59        17.29         1.41        12.13        10.32         5.33 
TCGA-EJ-A46D TCGA-EJ-A46E TCGA-EJ-A46H TCGA-EJ-A46I TCGA-FC-7708 TCGA-FC-A66V 
        4.21        17.06         7.50        22.09         1.05         4.01 
TCGA-FC-A6HD TCGA-G9-6332 TCGA-G9-6333 TCGA-G9-6336 TCGA-G9-6343 TCGA-G9-6351 
        1.78        65.92        65.95        65.98        18.21        46.13 
TCGA-G9-6353 TCGA-G9-6356 TCGA-G9-6361 TCGA-G9-6362 TCGA-G9-6363 TCGA-G9-6364 
       50.66        47.15        46.52        47.44        45.30        39.39 
TCGA-G9-6367 TCGA-G9-6369 TCGA-G9-6370 TCGA-G9-6371 TCGA-G9-6385 TCGA-G9-7519 
       40.18        39.95        38.01        40.31        27.29        27.91 
TCGA-G9-7522 TCGA-G9-7523 TCGA-G9-7525 TCGA-H9-7775 TCGA-HC-7075 TCGA-HC-7077 
       21.30        28.14        16.83         6.05         2.01        65.98 
TCGA-HC-7079 TCGA-HC-7209 TCGA-HC-7211 TCGA-HC-7230 TCGA-HC-7233 TCGA-HC-7740 
        2.93         1.02         0.99         1.68         1.71         1.74 
TCGA-HC-7747 TCGA-HC-7748 TCGA-HC-7750 TCGA-HC-7752 TCGA-HC-7817 TCGA-HC-7818 
        1.87        26.04         1.12         3.22         1.05         1.48 
TCGA-HC-A6AL TCGA-HC-A6HX TCGA-HI-7169 TCGA-HI-7170 TCGA-J4-8200 TCGA-M7-A71Y 
        2.20         1.22        64.08        62.43        12.30         5.16 
TCGA-M7-A71Z TCGA-M7-A720 
        6.87         9.93 

$subtype3
TCGA-CH-5739 TCGA-CH-5751 TCGA-CH-5753 TCGA-CH-5754 TCGA-CH-5761 TCGA-CH-5762 
       22.06        35.01         1.02         2.04         0.92        44.02 
TCGA-CH-5764 TCGA-CH-5766 TCGA-CH-5788 TCGA-CH-5791 TCGA-EJ-5495 TCGA-EJ-5507 
        1.02         1.02        26.96        33.01        33.07        23.90 
TCGA-EJ-5511 TCGA-EJ-5514 TCGA-EJ-5518 TCGA-EJ-5521 TCGA-EJ-5524 TCGA-EJ-5525 
       32.02        36.23        52.27        51.88        43.07        36.66 
TCGA-EJ-5526 TCGA-EJ-5527 TCGA-EJ-7123 TCGA-EJ-7315 TCGA-EJ-7330 TCGA-EJ-7781 
       38.76        39.75        48.99         9.50         6.28         5.56 
TCGA-EJ-7784 TCGA-EJ-7789 TCGA-EJ-8469 TCGA-EJ-8470 TCGA-EJ-8472 TCGA-EJ-A46F 
        5.49        18.15        63.98        26.99        66.12         9.83 
TCGA-G9-6338 TCGA-G9-6342 TCGA-G9-6366 TCGA-G9-6373 TCGA-G9-6377 TCGA-G9-6384 
       65.98        55.76         3.32        26.66        31.50        25.15 
TCGA-G9-6494 TCGA-G9-6499 TCGA-G9-7510 TCGA-G9-7521 TCGA-HC-7078 TCGA-HC-7212 
       58.22        50.73        38.96        15.98         5.33        28.96 
TCGA-HC-7213 TCGA-HC-7231 TCGA-HC-7742 TCGA-HC-7749 TCGA-HC-7821 TCGA-HC-8216 
        1.97         2.37         1.48         2.01         1.84        22.42 
TCGA-HC-8265 TCGA-HC-A48F TCGA-HC-A4ZV TCGA-HI-7168 TCGA-HI-7171 TCGA-J4-A67N 
       15.98         1.51         0.76        65.92        66.02        16.50 
TCGA-M7-A724 
       15.88 

subtype1 subtype2 subtype3 
    0.30     0.99     0.76 
subtype1 subtype2 subtype3 
   61.15    65.98    66.12 
subtype1 subtype2 subtype3 
    9.37    17.39    25.15 
[1] "0.3 - 61.1 (9.4)"  "1.0 - 66.0 (17.4)" "0.8 - 66.1 (25.1)"
  [1] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype2"
  [7] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
 [13] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
 [19] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
 [25] "subtype1" "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
 [31] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
 [37] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
 [43] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype3"
 [49] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype3"
 [55] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
 [61] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
 [67] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
 [73] "subtype2" "subtype2" "subtype3" "subtype1" "subtype3" "subtype1"
 [79] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype3"
 [85] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
 [91] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
 [97] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
[103] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[109] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
[115] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[121] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[127] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype1"
[133] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
[139] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[145] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[151] "subtype3" "subtype2" "subtype1" "subtype1" "subtype2" "subtype3"
[157] "subtype1" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[163] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[169] "subtype3" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
[175] "subtype2" "subtype3" "subtype1" "subtype2" "subtype3" "subtype2"
[181] "subtype2" "subtype2" "subtype1" "subtype3"
  [1] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype2"
  [7] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
 [13] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
 [19] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
 [25] "subtype1" "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
 [31] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
 [37] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
 [43] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype3"
 [49] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype3"
 [55] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
 [61] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
 [67] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
 [73] "subtype2" "subtype2" "subtype3" "subtype1" "subtype3" "subtype1"
 [79] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype3"
 [85] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
 [91] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
 [97] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
[103] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[109] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
[115] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[121] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[127] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype1"
[133] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
[139] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[145] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[151] "subtype3" "subtype2" "subtype1" "subtype1" "subtype2" "subtype3"
[157] "subtype1" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[163] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[169] "subtype3" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
[175] "subtype2" "subtype3" "subtype1" "subtype2" "subtype3" "subtype2"
[181] "subtype2" "subtype2" "subtype1" "subtype3"
  [1] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype2"
  [7] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
 [13] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
 [19] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
 [25] "subtype1" "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
 [31] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
 [37] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
 [43] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype3"
 [49] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype3"
 [55] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
 [61] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
 [67] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
 [73] "subtype2" "subtype2" "subtype3" "subtype1" "subtype3" "subtype1"
 [79] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype3"
 [85] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
 [91] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
 [97] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
[103] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[109] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
[115] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[121] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[127] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype1"
[133] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
[139] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[145] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[151] "subtype3" "subtype2" "subtype1" "subtype1" "subtype2" "subtype3"
[157] "subtype1" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[163] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[169] "subtype3" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
[175] "subtype2" "subtype3" "subtype1" "subtype2" "subtype3" "subtype2"
[181] "subtype2" "subtype2" "subtype1" "subtype3"
D1V2, continuous
          vv
clus       T2 T3 T4
  subtype1 20 10  1
  subtype2 50 45  1
  subtype3 10 42  3
D1V3, multiclass
D1V4, binary
          cls
clus        0  1
  subtype1 25  2
  subtype2 80  3
  subtype3 39 12
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   25    2
  subtype2   80    3
  subtype3   39   12
   clus
vv  subtype1 subtype2 subtype3
  0       25       80       39
  1        2        3       12
          vv
clus       R0 R1 RX
  subtype1 19  9  0
  subtype2 78 14  2
  subtype3 37 14  1
D1V5, multiclass
D1V6, continuous
D1V7, continuous
D1V8, continuous
D1V9, continuous
D1V10, continuous
D1V11, continuous
D1V12, continuous
D1V13, continuous
D1V14, continuous

Clustering(2) Variable = METHLYATION_CNMF
D2V1, survival
          sevent
clus2       0  1
  subtype1 52  0
  subtype2 63  0
  subtype3 69  1
subtype1 subtype2 subtype3 
      52       63       70 
subtype1 subtype2 subtype3 
       0        0        1 
$subtype1
TCGA-CH-5737 TCGA-CH-5748 TCGA-CH-5751 TCGA-CH-5761 TCGA-CH-5767 TCGA-CH-5772 
        2.99         1.02        35.01         0.92        15.06        15.95 
TCGA-CH-5792 TCGA-EJ-5494 TCGA-EJ-5504 TCGA-EJ-5509 TCGA-EJ-5514 TCGA-EJ-5518 
        2.99        27.12        28.93        36.03        36.23        52.27 
TCGA-EJ-5519 TCGA-EJ-5532 TCGA-EJ-7115 TCGA-EJ-7123 TCGA-EJ-7125 TCGA-EJ-7315 
       43.89        48.03        26.99        48.99        61.15         9.50 
TCGA-EJ-7317 TCGA-EJ-7330 TCGA-EJ-7331 TCGA-EJ-7782 TCGA-EJ-7786 TCGA-EJ-7789 
        9.37         6.28         0.30         2.10        14.53        18.15 
TCGA-EJ-7794 TCGA-EJ-8470 TCGA-FC-7961 TCGA-FC-A5OB TCGA-FC-A6HD TCGA-G9-6333 
       23.01        26.99         2.30         8.98         1.78        65.95 
TCGA-G9-6338 TCGA-G9-6343 TCGA-G9-6369 TCGA-G9-6371 TCGA-G9-6494 TCGA-G9-6496 
       65.98        18.21        39.95        40.31        58.22        56.75 
TCGA-G9-6499 TCGA-G9-7510 TCGA-G9-7521 TCGA-G9-7523 TCGA-HC-7075 TCGA-HC-7078 
       50.73        38.96        15.98        28.14         2.01         5.33 
TCGA-HC-7080 TCGA-HC-7211 TCGA-HC-7736 TCGA-HC-7737 TCGA-HC-8265 TCGA-HC-A4ZV 
        2.01         0.99         0.99         2.07        15.98         0.76 
TCGA-HC-A6AL TCGA-HI-7168 TCGA-M7-A721 TCGA-M7-A724 
        2.20        65.92         6.71        15.88 

$subtype2
TCGA-CH-5738 TCGA-CH-5743 TCGA-CH-5746 TCGA-CH-5762 TCGA-CH-5763 TCGA-CH-5771 
        6.97        13.94        24.03        44.02        12.00        12.99 
TCGA-CH-5789 TCGA-EJ-5497 TCGA-EJ-5498 TCGA-EJ-5501 TCGA-EJ-5502 TCGA-EJ-5503 
        9.96        13.02        29.75        30.77         8.02        23.54 
TCGA-EJ-5505 TCGA-EJ-5506 TCGA-EJ-5510 TCGA-EJ-5512 TCGA-EJ-5515 TCGA-EJ-5516 
       30.28        27.19        36.66        38.53        40.77        46.55 
TCGA-EJ-5517 TCGA-EJ-5527 TCGA-EJ-5531 TCGA-EJ-7328 TCGA-EJ-7781 TCGA-EJ-7785 
       47.80        39.75        30.25         5.59         5.56         8.48 
TCGA-EJ-7791 TCGA-EJ-7792 TCGA-EJ-7793 TCGA-EJ-7797 TCGA-EJ-A46B TCGA-EJ-A46D 
       19.59        17.29         1.41        12.13         5.33         4.21 
TCGA-EJ-A46E TCGA-EJ-A46H TCGA-EJ-A46I TCGA-FC-7708 TCGA-FC-A66V TCGA-G9-6329 
       17.06         7.50        22.09         1.05         4.01        41.62 
TCGA-G9-6336 TCGA-G9-6348 TCGA-G9-6351 TCGA-G9-6353 TCGA-G9-6356 TCGA-G9-6366 
       65.98        49.81        46.13        50.66        47.15         3.32 
TCGA-G9-6367 TCGA-G9-6370 TCGA-G9-6378 TCGA-G9-6384 TCGA-G9-6385 TCGA-G9-7519 
       40.18        38.01        37.97        25.15        27.29        27.91 
TCGA-G9-7522 TCGA-HC-7079 TCGA-HC-7233 TCGA-HC-7740 TCGA-HC-7742 TCGA-HC-7747 
       21.30         2.93         1.71         1.74         1.48         1.87 
TCGA-HC-7750 TCGA-HC-7817 TCGA-HC-8216 TCGA-HC-A6AS TCGA-HC-A6HX TCGA-HI-7170 
        1.12         1.05        22.42         1.45         1.22        62.43 
TCGA-J4-8200 TCGA-M7-A71Y TCGA-M7-A720 
       12.30         5.16         9.93 

$subtype3
TCGA-CH-5739 TCGA-CH-5740 TCGA-CH-5741 TCGA-CH-5744 TCGA-CH-5745 TCGA-CH-5750 
       22.06         1.02        12.99         1.97         2.99        12.99 
TCGA-CH-5752 TCGA-CH-5753 TCGA-CH-5754 TCGA-CH-5764 TCGA-CH-5765 TCGA-CH-5766 
       30.97         1.02         2.04         1.02        23.01         1.02 
TCGA-CH-5768 TCGA-CH-5769 TCGA-CH-5788 TCGA-CH-5790 TCGA-CH-5791 TCGA-CH-5794 
       24.03         2.04        26.96        32.02        33.01        28.96 
TCGA-EJ-5495 TCGA-EJ-5496 TCGA-EJ-5499 TCGA-EJ-5507 TCGA-EJ-5508 TCGA-EJ-5511 
       33.07        19.53        17.49        23.90        38.93        32.02 
TCGA-EJ-5521 TCGA-EJ-5522 TCGA-EJ-5524 TCGA-EJ-5525 TCGA-EJ-5526 TCGA-EJ-5530 
       51.88        48.07        43.07        36.66        38.76        41.82 
TCGA-EJ-5542 TCGA-EJ-7314 TCGA-EJ-7321 TCGA-EJ-7327 TCGA-EJ-7783 TCGA-EJ-7784 
       29.06         9.70         7.66         5.75         4.31         5.49 
TCGA-EJ-7788 TCGA-EJ-8469 TCGA-EJ-8472 TCGA-EJ-8474 TCGA-EJ-A46F TCGA-G9-6332 
        1.71        63.98        66.12        10.32         9.83        65.92 
TCGA-G9-6342 TCGA-G9-6361 TCGA-G9-6362 TCGA-G9-6363 TCGA-G9-6364 TCGA-G9-6365 
       55.76        46.52        47.44        45.30        39.39        44.81 
TCGA-G9-6373 TCGA-G9-6377 TCGA-G9-7525 TCGA-H9-7775 TCGA-HC-7077 TCGA-HC-7209 
       26.66        31.50        16.83         6.05        65.98         1.02 
TCGA-HC-7212 TCGA-HC-7213 TCGA-HC-7230 TCGA-HC-7231 TCGA-HC-7744 TCGA-HC-7748 
       28.96         1.97         1.68         2.37         1.68        26.04 
TCGA-HC-7749 TCGA-HC-7752 TCGA-HC-7818 TCGA-HC-7821 TCGA-HC-A48F TCGA-HI-7169 
        2.01         3.22         1.48         1.84         1.51        64.08 
TCGA-HI-7171 TCGA-J4-8198 TCGA-J4-A67N TCGA-M7-A71Z 
       66.02         3.22        16.50         6.87 

subtype1 subtype2 subtype3 
    0.30     1.05     1.02 
subtype1 subtype2 subtype3 
   65.98    65.98    66.12 
subtype1 subtype2 subtype3 
  15.980   17.290   20.795 
[1] "0.3 - 66.0 (16.0)" "1.1 - 66.0 (17.3)" "1.0 - 66.1 (20.8)"
  [1] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
  [7] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype1"
 [13] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype2"
 [19] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
 [25] "subtype2" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
 [31] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
 [37] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype1"
 [43] "subtype2" "subtype2" "subtype3" "subtype3" "subtype1" "subtype2"
 [49] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
 [55] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
 [61] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
 [67] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
 [73] "subtype3" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
 [79] "subtype1" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
 [85] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
 [91] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
 [97] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype1"
[103] "subtype1" "subtype2" "subtype1" "subtype2" "subtype3" "subtype1"
[109] "subtype2" "subtype1" "subtype3" "subtype1" "subtype2" "subtype2"
[115] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[121] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
[127] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype1"
[133] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[139] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
[145] "subtype2" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[151] "subtype3" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
[157] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
[163] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype1"
[169] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
[175] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[181] "subtype2" "subtype3" "subtype2" "subtype1" "subtype1"
  [1] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
  [7] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype1"
 [13] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype2"
 [19] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
 [25] "subtype2" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
 [31] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
 [37] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype1"
 [43] "subtype2" "subtype2" "subtype3" "subtype3" "subtype1" "subtype2"
 [49] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
 [55] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
 [61] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
 [67] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
 [73] "subtype3" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
 [79] "subtype1" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
 [85] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
 [91] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
 [97] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype1"
[103] "subtype1" "subtype2" "subtype1" "subtype2" "subtype3" "subtype1"
[109] "subtype2" "subtype1" "subtype3" "subtype1" "subtype2" "subtype2"
[115] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[121] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
[127] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype1"
[133] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[139] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
[145] "subtype2" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[151] "subtype3" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
[157] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
[163] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype1"
[169] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
[175] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[181] "subtype2" "subtype3" "subtype2" "subtype1" "subtype1"
  [1] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
  [7] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype1"
 [13] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype2"
 [19] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
 [25] "subtype2" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
 [31] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
 [37] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype1"
 [43] "subtype2" "subtype2" "subtype3" "subtype3" "subtype1" "subtype2"
 [49] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
 [55] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
 [61] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
 [67] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
 [73] "subtype3" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
 [79] "subtype1" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
 [85] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
 [91] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
 [97] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype1"
[103] "subtype1" "subtype2" "subtype1" "subtype2" "subtype3" "subtype1"
[109] "subtype2" "subtype1" "subtype3" "subtype1" "subtype2" "subtype2"
[115] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[121] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
[127] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype1"
[133] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[139] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
[145] "subtype2" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[151] "subtype3" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
[157] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
[163] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype1"
[169] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
[175] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[181] "subtype2" "subtype3" "subtype2" "subtype1" "subtype1"
D2V2, continuous
          vv
clus       T2 T3 T4
  subtype1 24 25  3
  subtype2 35 26  0
  subtype3 21 47  2
D2V3, multiclass
D2V4, binary
          cls
clus        0  1
  subtype1 43  5
  subtype2 49  1
  subtype3 53 11
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   43    5
  subtype2   49    1
  subtype3   53   11
   clus
vv  subtype1 subtype2 subtype3
  0       43       49       53
  1        5        1       11
          vv
clus       R0 R1 RX
  subtype1 33 16  0
  subtype2 49  9  2
  subtype3 53 12  1
D2V5, multiclass
D2V6, continuous
D2V7, continuous
D2V8, continuous
D2V9, continuous
D2V10, continuous
D2V11, continuous
D2V12, continuous
D2V13, continuous
D2V14, continuous

Clustering(3) Variable = RPPA_CNMF
D3V1, survival
          sevent
clus2       0  1
  subtype1 41  0
  subtype2 50  0
  subtype3 51  1
subtype1 subtype2 subtype3 
      41       50       52 
subtype1 subtype2 subtype3 
       0        0        1 
$subtype1
TCGA-CH-5737 TCGA-CH-5739 TCGA-CH-5740 TCGA-CH-5743 TCGA-CH-5744 TCGA-CH-5745 
        2.99        22.06         1.02        13.94         1.97         2.99 
TCGA-CH-5748 TCGA-CH-5750 TCGA-CH-5753 TCGA-CH-5762 TCGA-CH-5763 TCGA-CH-5767 
        1.02        12.99         1.02        44.02        12.00        15.06 
TCGA-CH-5768 TCGA-CH-5789 TCGA-CH-5790 TCGA-CH-5791 TCGA-CH-5794 TCGA-EJ-5495 
       24.03         9.96        32.02        33.01        28.96        33.07 
TCGA-EJ-5496 TCGA-EJ-5497 TCGA-EJ-5502 TCGA-EJ-5504 TCGA-EJ-5505 TCGA-EJ-5506 
       19.53        13.02         8.02        28.93        30.28        27.19 
TCGA-EJ-5508 TCGA-EJ-5509 TCGA-EJ-5515 TCGA-EJ-5516 TCGA-EJ-5517 TCGA-EJ-5524 
       38.93        36.03        40.77        46.55        47.80        43.07 
TCGA-EJ-5527 TCGA-EJ-5532 TCGA-EJ-5542 TCGA-EJ-7330 TCGA-EJ-7783 TCGA-EJ-7785 
       39.75        48.03        29.06         6.28         4.31         8.48 
TCGA-EJ-7786 TCGA-EJ-7791 TCGA-EJ-A46E TCGA-HC-7736 TCGA-HC-7748 
       14.53        19.59        17.06         0.99        26.04 

$subtype2
TCGA-CH-5738 TCGA-CH-5764 TCGA-CH-5771 TCGA-CH-5772 TCGA-EJ-5498 TCGA-EJ-5499 
        6.97         1.02        12.99        15.95        29.75        17.49 
TCGA-EJ-5501 TCGA-EJ-5503 TCGA-EJ-5510 TCGA-EJ-5511 TCGA-EJ-5512 TCGA-EJ-7115 
       30.77        23.54        36.66        32.02        38.53        26.99 
TCGA-EJ-7125 TCGA-EJ-7314 TCGA-EJ-7315 TCGA-EJ-7317 TCGA-EJ-7328 TCGA-EJ-7331 
       61.15         9.70         9.50         9.37         5.59         0.30 
TCGA-EJ-7781 TCGA-EJ-7792 TCGA-EJ-7793 TCGA-EJ-7794 TCGA-EJ-7797 TCGA-EJ-8470 
        5.56        17.29         1.41        23.01        12.13        26.99 
TCGA-EJ-A46B TCGA-EJ-A46D TCGA-EJ-A46F TCGA-FC-7708 TCGA-G9-6329 TCGA-G9-6342 
        5.33         4.21         9.83         1.05        41.62        55.76 
TCGA-G9-6343 TCGA-G9-6351 TCGA-G9-6353 TCGA-G9-6364 TCGA-G9-6367 TCGA-G9-6370 
       18.21        46.13        50.66        39.39        40.18        38.01 
TCGA-G9-6371 TCGA-G9-6384 TCGA-G9-6494 TCGA-G9-6499 TCGA-G9-7522 TCGA-G9-7523 
       40.31        25.15        58.22        50.73        21.30        28.14 
TCGA-H9-7775 TCGA-HC-7079 TCGA-HC-7233 TCGA-HC-7740 TCGA-HI-7168 TCGA-HI-7169 
        6.05         2.93         1.71         1.74        65.92        64.08 
TCGA-HI-7170 TCGA-J4-8200 
       62.43        12.30 

$subtype3
TCGA-CH-5741 TCGA-CH-5751 TCGA-CH-5752 TCGA-CH-5754 TCGA-CH-5761 TCGA-CH-5765 
       12.99        35.01        30.97         2.04         0.92        23.01 
TCGA-CH-5766 TCGA-CH-5769 TCGA-CH-5788 TCGA-CH-5792 TCGA-EJ-5494 TCGA-EJ-5507 
        1.02         2.04        26.96         2.99        27.12        23.90 
TCGA-EJ-5514 TCGA-EJ-5518 TCGA-EJ-5519 TCGA-EJ-5521 TCGA-EJ-5522 TCGA-EJ-5525 
       36.23        52.27        43.89        51.88        48.07        36.66 
TCGA-EJ-5526 TCGA-EJ-5530 TCGA-EJ-5531 TCGA-EJ-7321 TCGA-EJ-7782 TCGA-EJ-7784 
       38.76        41.82        30.25         7.66         2.10         5.49 
TCGA-EJ-7788 TCGA-EJ-7789 TCGA-EJ-8469 TCGA-EJ-8474 TCGA-FC-7961 TCGA-FC-A5OB 
        1.71        18.15        63.98        10.32         2.30         8.98 
TCGA-G9-6338 TCGA-G9-6356 TCGA-G9-6361 TCGA-G9-6362 TCGA-G9-6363 TCGA-G9-6365 
       65.98        47.15        46.52        47.44        45.30        44.81 
TCGA-G9-6366 TCGA-G9-6373 TCGA-G9-6377 TCGA-G9-6378 TCGA-G9-6496 TCGA-G9-7510 
        3.32        26.66        31.50        37.97        56.75        38.96 
TCGA-G9-7521 TCGA-G9-7525 TCGA-HC-7077 TCGA-HC-7211 TCGA-HC-7212 TCGA-HC-7213 
       15.98        16.83        65.98         0.99        28.96         1.97 
TCGA-HC-7744 TCGA-HC-7817 TCGA-HI-7171 TCGA-J4-8198 
        1.68         1.05        66.02         3.22 

subtype1 subtype2 subtype3 
    0.99     0.30     0.92 
subtype1 subtype2 subtype3 
   48.03    65.92    66.02 
subtype1 subtype2 subtype3 
  19.590   22.155   27.040 
[1] "1.0 - 48.0 (19.6)" "0.3 - 65.9 (22.2)" "0.9 - 66.0 (27.0)"
  [1] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype1"
  [7] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
 [13] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
 [19] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype2"
 [25] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
 [31] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
 [37] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
 [43] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
 [49] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
 [55] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
 [61] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
 [67] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
 [73] "subtype1" "subtype2" "subtype2" "subtype3" "subtype1" "subtype3"
 [79] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype2"
 [85] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
 [91] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
 [97] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[103] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[109] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[115] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[121] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[127] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[133] "subtype1" "subtype2" "subtype3" "subtype1" "subtype3" "subtype2"
[139] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
  [1] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype1"
  [7] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
 [13] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
 [19] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype2"
 [25] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
 [31] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
 [37] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
 [43] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
 [49] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
 [55] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
 [61] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
 [67] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
 [73] "subtype1" "subtype2" "subtype2" "subtype3" "subtype1" "subtype3"
 [79] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype2"
 [85] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
 [91] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
 [97] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[103] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[109] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[115] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[121] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[127] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[133] "subtype1" "subtype2" "subtype3" "subtype1" "subtype3" "subtype2"
[139] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
  [1] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype1"
  [7] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
 [13] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
 [19] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype2"
 [25] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
 [31] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
 [37] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
 [43] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
 [49] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
 [55] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
 [61] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
 [67] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
 [73] "subtype1" "subtype2" "subtype2" "subtype3" "subtype1" "subtype3"
 [79] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype2"
 [85] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
 [91] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
 [97] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[103] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[109] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[115] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[121] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[127] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[133] "subtype1" "subtype2" "subtype3" "subtype1" "subtype3" "subtype2"
[139] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
D3V2, continuous
          vv
clus       T2 T3 T4
  subtype1 18 22  0
  subtype2 25 24  1
  subtype3 12 36  4
D3V3, multiclass
D3V4, binary
          cls
clus        0  1
  subtype1 37  4
  subtype2 40  1
  subtype3 37  9
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   37    4
  subtype2   40    1
  subtype3   37    9
   clus
vv  subtype1 subtype2 subtype3
  0       37       40       37
  1        4        1        9
          vv
clus       R0 R1 RX
  subtype1 34  5  1
  subtype2 37  9  1
  subtype3 31 16  1
D3V5, multiclass
D3V6, continuous
D3V7, continuous
D3V8, continuous
D3V9, continuous
D3V10, continuous
D3V11, continuous
D3V12, continuous
D3V13, continuous
D3V14, continuous

Clustering(4) Variable = RPPA_CHIERARCHICAL
D4V1, survival
          sevent
clus2       0  1
  subtype1 50  0
  subtype2 52  1
  subtype3 40  0
subtype1 subtype2 subtype3 
      50       53       40 
subtype1 subtype2 subtype3 
       0        1        0 
$subtype1
TCGA-CH-5737 TCGA-CH-5738 TCGA-CH-5739 TCGA-CH-5740 TCGA-CH-5743 TCGA-CH-5744 
        2.99         6.97        22.06         1.02        13.94         1.97 
TCGA-CH-5745 TCGA-CH-5748 TCGA-CH-5750 TCGA-CH-5753 TCGA-CH-5762 TCGA-CH-5763 
        2.99         1.02        12.99         1.02        44.02        12.00 
TCGA-CH-5764 TCGA-CH-5765 TCGA-CH-5766 TCGA-CH-5767 TCGA-CH-5768 TCGA-CH-5771 
        1.02        23.01         1.02        15.06        24.03        12.99 
TCGA-CH-5789 TCGA-CH-5790 TCGA-CH-5791 TCGA-CH-5794 TCGA-EJ-5495 TCGA-EJ-5496 
        9.96        32.02        33.01        28.96        33.07        19.53 
TCGA-EJ-5497 TCGA-EJ-5501 TCGA-EJ-5502 TCGA-EJ-5504 TCGA-EJ-5505 TCGA-EJ-5508 
       13.02        30.77         8.02        28.93        30.28        38.93 
TCGA-EJ-5509 TCGA-EJ-5512 TCGA-EJ-5515 TCGA-EJ-5516 TCGA-EJ-5517 TCGA-EJ-5524 
       36.03        38.53        40.77        46.55        47.80        43.07 
TCGA-EJ-5531 TCGA-EJ-5532 TCGA-EJ-7314 TCGA-EJ-7317 TCGA-EJ-7330 TCGA-EJ-7781 
       30.25        48.03         9.70         9.37         6.28         5.56 
TCGA-EJ-7783 TCGA-EJ-7785 TCGA-EJ-7786 TCGA-EJ-7791 TCGA-EJ-A46E TCGA-HC-7736 
        4.31         8.48        14.53        19.59        17.06         0.99 
TCGA-HC-7740 TCGA-HC-7748 
        1.74        26.04 

$subtype2
TCGA-CH-5741 TCGA-CH-5751 TCGA-CH-5752 TCGA-CH-5754 TCGA-CH-5761 TCGA-CH-5769 
       12.99        35.01        30.97         2.04         0.92         2.04 
TCGA-CH-5788 TCGA-CH-5792 TCGA-EJ-5494 TCGA-EJ-5506 TCGA-EJ-5507 TCGA-EJ-5514 
       26.96         2.99        27.12        27.19        23.90        36.23 
TCGA-EJ-5518 TCGA-EJ-5519 TCGA-EJ-5521 TCGA-EJ-5522 TCGA-EJ-5525 TCGA-EJ-5526 
       52.27        43.89        51.88        48.07        36.66        38.76 
TCGA-EJ-5530 TCGA-EJ-7321 TCGA-EJ-7782 TCGA-EJ-7784 TCGA-EJ-7788 TCGA-EJ-7789 
       41.82         7.66         2.10         5.49         1.71        18.15 
TCGA-EJ-8469 TCGA-EJ-8470 TCGA-EJ-8474 TCGA-FC-A5OB TCGA-G9-6338 TCGA-G9-6343 
       63.98        26.99        10.32         8.98        65.98        18.21 
TCGA-G9-6356 TCGA-G9-6361 TCGA-G9-6362 TCGA-G9-6363 TCGA-G9-6365 TCGA-G9-6366 
       47.15        46.52        47.44        45.30        44.81         3.32 
TCGA-G9-6373 TCGA-G9-6377 TCGA-G9-6378 TCGA-G9-6496 TCGA-G9-7510 TCGA-G9-7521 
       26.66        31.50        37.97        56.75        38.96        15.98 
TCGA-G9-7525 TCGA-H9-7775 TCGA-HC-7077 TCGA-HC-7079 TCGA-HC-7211 TCGA-HC-7212 
       16.83         6.05        65.98         2.93         0.99        28.96 
TCGA-HC-7213 TCGA-HC-7744 TCGA-HC-7817 TCGA-HI-7171 TCGA-J4-8198 
        1.97         1.68         1.05        66.02         3.22 

$subtype3
TCGA-CH-5772 TCGA-EJ-5498 TCGA-EJ-5499 TCGA-EJ-5503 TCGA-EJ-5510 TCGA-EJ-5511 
       15.95        29.75        17.49        23.54        36.66        32.02 
TCGA-EJ-5527 TCGA-EJ-5542 TCGA-EJ-7115 TCGA-EJ-7125 TCGA-EJ-7315 TCGA-EJ-7328 
       39.75        29.06        26.99        61.15         9.50         5.59 
TCGA-EJ-7331 TCGA-EJ-7792 TCGA-EJ-7793 TCGA-EJ-7794 TCGA-EJ-7797 TCGA-EJ-A46B 
        0.30        17.29         1.41        23.01        12.13         5.33 
TCGA-EJ-A46D TCGA-EJ-A46F TCGA-FC-7708 TCGA-FC-7961 TCGA-G9-6329 TCGA-G9-6342 
        4.21         9.83         1.05         2.30        41.62        55.76 
TCGA-G9-6351 TCGA-G9-6353 TCGA-G9-6364 TCGA-G9-6367 TCGA-G9-6370 TCGA-G9-6371 
       46.13        50.66        39.39        40.18        38.01        40.31 
TCGA-G9-6384 TCGA-G9-6494 TCGA-G9-6499 TCGA-G9-7522 TCGA-G9-7523 TCGA-HC-7233 
       25.15        58.22        50.73        21.30        28.14         1.71 
TCGA-HI-7168 TCGA-HI-7169 TCGA-HI-7170 TCGA-J4-8200 
       65.92        64.08        62.43        12.30 

subtype1 subtype2 subtype3 
    0.99     0.92     0.30 
subtype1 subtype2 subtype3 
   48.03    66.02    65.92 
subtype1 subtype2 subtype3 
  14.795   26.990   27.565 
[1] "1.0 - 48.0 (14.8)" "0.9 - 66.0 (27.0)" "0.3 - 65.9 (27.6)"
  [1] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
  [7] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
 [13] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
 [19] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
 [25] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
 [31] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
 [37] "subtype3" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
 [43] "subtype2" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
 [49] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
 [55] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
 [61] "subtype3" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
 [67] "subtype3" "subtype1" "subtype3" "subtype1" "subtype2" "subtype3"
 [73] "subtype1" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
 [79] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype3"
 [85] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
 [91] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
 [97] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[103] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[109] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[115] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[121] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[127] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[133] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype3"
[139] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
  [1] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
  [7] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
 [13] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
 [19] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
 [25] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
 [31] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
 [37] "subtype3" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
 [43] "subtype2" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
 [49] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
 [55] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
 [61] "subtype3" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
 [67] "subtype3" "subtype1" "subtype3" "subtype1" "subtype2" "subtype3"
 [73] "subtype1" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
 [79] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype3"
 [85] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
 [91] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
 [97] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[103] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[109] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[115] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[121] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[127] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[133] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype3"
[139] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
  [1] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
  [7] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
 [13] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
 [19] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
 [25] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
 [31] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
 [37] "subtype3" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
 [43] "subtype2" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
 [49] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
 [55] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
 [61] "subtype3" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
 [67] "subtype3" "subtype1" "subtype3" "subtype1" "subtype2" "subtype3"
 [73] "subtype1" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
 [79] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype3"
 [85] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
 [91] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
 [97] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[103] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[109] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[115] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[121] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[127] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[133] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype3"
[139] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
D4V2, continuous
          vv
clus       T2 T3 T4
  subtype1 24 25  0
  subtype2 15 34  4
  subtype3 16 23  1
D4V3, multiclass
D4V4, binary
          cls
clus        0  1
  subtype1 45  4
  subtype2 36  9
  subtype3 33  1
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   45    4
  subtype2   36    9
  subtype3   33    1
   clus
vv  subtype1 subtype2 subtype3
  0       45       36       33
  1        4        9        1
          vv
clus       R0 R1 RX
  subtype1 44  5  0
  subtype2 30 16  2
  subtype3 28  9  1
D4V5, multiclass
D4V6, continuous
D4V7, continuous
D4V8, continuous
D4V9, continuous
D4V10, continuous
D4V11, continuous
D4V12, continuous
D4V13, continuous
D4V14, continuous

Clustering(5) Variable = MRNASEQ_CNMF
D5V1, survival
          sevent
clus2       0  1
  subtype1 38  0
  subtype2 63  0
  subtype3 45  1
  subtype4 38  0
subtype1 subtype2 subtype3 subtype4 
      38       63       46       38 
subtype1 subtype2 subtype3 subtype4 
       0        0        1        0 
$subtype1
TCGA-CH-5737 TCGA-CH-5751 TCGA-CH-5767 TCGA-CH-5772 TCGA-CH-5788 TCGA-EJ-5494 
        2.99        35.01        15.06        15.95        26.96        27.12 
TCGA-EJ-7123 TCGA-EJ-7125 TCGA-EJ-7317 TCGA-EJ-7789 TCGA-EJ-A46B TCGA-FC-7961 
       48.99        61.15         9.37        18.15         5.33         2.30 
TCGA-FC-A5OB TCGA-FC-A6HD TCGA-G9-6333 TCGA-G9-6338 TCGA-G9-6343 TCGA-G9-6366 
        8.98         1.78        65.95        65.98        18.21         3.32 
TCGA-G9-6369 TCGA-G9-6378 TCGA-G9-6496 TCGA-G9-6499 TCGA-G9-7519 TCGA-G9-7523 
       39.95        37.97        56.75        50.73        27.91        28.14 
TCGA-HC-7075 TCGA-HC-7078 TCGA-HC-7080 TCGA-HC-7750 TCGA-HC-7752 TCGA-HC-8216 
        2.01         5.33         2.01         1.12         3.22        22.42 
TCGA-HC-8265 TCGA-HC-A4ZV TCGA-HC-A6AL TCGA-HI-7168 TCGA-HI-7169 TCGA-J4-8200 
       15.98         0.76         2.20        65.92        64.08        12.30 
TCGA-M7-A721 TCGA-M7-A724 
        6.71        15.88 

$subtype2
TCGA-CH-5738 TCGA-CH-5739 TCGA-CH-5745 TCGA-CH-5748 TCGA-CH-5750 TCGA-CH-5762 
        6.97        22.06         2.99         1.02        12.99        44.02 
TCGA-CH-5764 TCGA-CH-5768 TCGA-CH-5789 TCGA-CH-5792 TCGA-EJ-5495 TCGA-EJ-5496 
        1.02        24.03         9.96         2.99        33.07        19.53 
TCGA-EJ-5497 TCGA-EJ-5501 TCGA-EJ-5502 TCGA-EJ-5504 TCGA-EJ-5505 TCGA-EJ-5508 
       13.02        30.77         8.02        28.93        30.28        38.93 
TCGA-EJ-5509 TCGA-EJ-5511 TCGA-EJ-5512 TCGA-EJ-5514 TCGA-EJ-5515 TCGA-EJ-5516 
       36.03        32.02        38.53        36.23        40.77        46.55 
TCGA-EJ-5517 TCGA-EJ-5518 TCGA-EJ-5519 TCGA-EJ-5522 TCGA-EJ-5524 TCGA-EJ-5526 
       47.80        52.27        43.89        48.07        43.07        38.76 
TCGA-EJ-5527 TCGA-EJ-5531 TCGA-EJ-5532 TCGA-EJ-5542 TCGA-EJ-7115 TCGA-EJ-7327 
       39.75        30.25        48.03        29.06        26.99         5.75 
TCGA-EJ-7330 TCGA-EJ-7331 TCGA-EJ-7781 TCGA-EJ-7782 TCGA-EJ-7785 TCGA-EJ-7786 
        6.28         0.30         5.56         2.10         8.48        14.53 
TCGA-EJ-7788 TCGA-EJ-7791 TCGA-EJ-7792 TCGA-EJ-7793 TCGA-EJ-7794 TCGA-EJ-8470 
        1.71        19.59        17.29         1.41        23.01        26.99 
TCGA-EJ-8474 TCGA-FC-7708 TCGA-G9-6371 TCGA-G9-6384 TCGA-G9-6494 TCGA-G9-7521 
       10.32         1.05        40.31        25.15        58.22        15.98 
TCGA-HC-7211 TCGA-HC-7233 TCGA-HC-7736 TCGA-HC-7737 TCGA-HC-7742 TCGA-HC-7748 
        0.99         1.71         0.99         2.07         1.48        26.04 
TCGA-HC-7749 TCGA-HC-7818 TCGA-J4-8198 
        2.01         1.48         3.22 

$subtype3
TCGA-CH-5740 TCGA-CH-5741 TCGA-CH-5744 TCGA-CH-5752 TCGA-CH-5753 TCGA-CH-5754 
        1.02        12.99         1.97        30.97         1.02         2.04 
TCGA-CH-5761 TCGA-CH-5765 TCGA-CH-5766 TCGA-CH-5769 TCGA-CH-5790 TCGA-CH-5791 
        0.92        23.01         1.02         2.04        32.02        33.01 
TCGA-CH-5794 TCGA-EJ-5507 TCGA-EJ-5521 TCGA-EJ-5525 TCGA-EJ-5530 TCGA-EJ-7314 
       28.96        23.90        51.88        36.66        41.82         9.70 
TCGA-EJ-7315 TCGA-EJ-7321 TCGA-EJ-7784 TCGA-EJ-8469 TCGA-EJ-8472 TCGA-EJ-A46F 
        9.50         7.66         5.49        63.98        66.12         9.83 
TCGA-G9-6332 TCGA-G9-6342 TCGA-G9-6361 TCGA-G9-6362 TCGA-G9-6363 TCGA-G9-6364 
       65.92        55.76        46.52        47.44        45.30        39.39 
TCGA-G9-6373 TCGA-G9-6377 TCGA-G9-7525 TCGA-H9-7775 TCGA-HC-7077 TCGA-HC-7209 
       26.66        31.50        16.83         6.05        65.98         1.02 
TCGA-HC-7212 TCGA-HC-7213 TCGA-HC-7230 TCGA-HC-7231 TCGA-HC-7744 TCGA-HC-7821 
       28.96         1.97         1.68         2.37         1.68         1.84 
TCGA-HC-A48F TCGA-HI-7171 TCGA-J4-A67N TCGA-M7-A71Z 
        1.51        66.02        16.50         6.87 

$subtype4
TCGA-CH-5743 TCGA-CH-5746 TCGA-CH-5763 TCGA-CH-5771 TCGA-EJ-5498 TCGA-EJ-5499 
       13.94        24.03        12.00        12.99        29.75        17.49 
TCGA-EJ-5503 TCGA-EJ-5506 TCGA-EJ-5510 TCGA-EJ-7328 TCGA-EJ-7783 TCGA-EJ-7797 
       23.54        27.19        36.66         5.59         4.31        12.13 
TCGA-EJ-A46D TCGA-EJ-A46E TCGA-EJ-A46H TCGA-EJ-A46I TCGA-FC-A66V TCGA-G9-6329 
        4.21        17.06         7.50        22.09         4.01        41.62 
TCGA-G9-6336 TCGA-G9-6348 TCGA-G9-6351 TCGA-G9-6353 TCGA-G9-6356 TCGA-G9-6365 
       65.98        49.81        46.13        50.66        47.15        44.81 
TCGA-G9-6367 TCGA-G9-6370 TCGA-G9-6385 TCGA-G9-7510 TCGA-G9-7522 TCGA-HC-7079 
       40.18        38.01        27.29        38.96        21.30         2.93 
TCGA-HC-7740 TCGA-HC-7747 TCGA-HC-7817 TCGA-HC-A6AS TCGA-HC-A6HX TCGA-HI-7170 
        1.74         1.87         1.05         1.45         1.22        62.43 
TCGA-M7-A71Y TCGA-M7-A720 
        5.16         9.93 

subtype1 subtype2 subtype3 subtype4 
    0.76     0.30     0.92     1.05 
subtype1 subtype2 subtype3 subtype4 
   65.98    58.22    66.12    65.98 
subtype1 subtype2 subtype3 subtype4 
  15.965   19.590   16.665   19.395 
[1] "0.8 - 66.0 (16.0)" "0.3 - 58.2 (19.6)" "0.9 - 66.1 (16.7)"
[4] "1.1 - 66.0 (19.4)"
  [1] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype4"
  [7] "subtype3" "subtype2" "subtype4" "subtype2" "subtype2" "subtype1"
 [13] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype4"
 [19] "subtype2" "subtype3" "subtype3" "subtype1" "subtype2" "subtype3"
 [25] "subtype4" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
 [31] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
 [37] "subtype4" "subtype4" "subtype2" "subtype2" "subtype4" "subtype2"
 [43] "subtype2" "subtype4" "subtype3" "subtype2" "subtype2" "subtype4"
 [49] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [55] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
 [61] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
 [67] "subtype2" "subtype1" "subtype1" "subtype3" "subtype3" "subtype1"
 [73] "subtype3" "subtype2" "subtype4" "subtype2" "subtype2" "subtype2"
 [79] "subtype2" "subtype4" "subtype3" "subtype2" "subtype2" "subtype2"
 [85] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype4"
 [91] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype4"
 [97] "subtype4" "subtype3" "subtype4" "subtype4" "subtype2" "subtype1"
[103] "subtype1" "subtype4" "subtype1" "subtype4" "subtype3" "subtype1"
[109] "subtype4" "subtype1" "subtype3" "subtype1" "subtype4" "subtype4"
[115] "subtype4" "subtype4" "subtype3" "subtype3" "subtype3" "subtype3"
[121] "subtype4" "subtype1" "subtype4" "subtype1" "subtype4" "subtype2"
[127] "subtype3" "subtype3" "subtype1" "subtype2" "subtype4" "subtype2"
[133] "subtype1" "subtype1" "subtype4" "subtype1" "subtype2" "subtype4"
[139] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
[145] "subtype4" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
[151] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype4"
[157] "subtype2" "subtype3" "subtype4" "subtype2" "subtype2" "subtype1"
[163] "subtype1" "subtype4" "subtype2" "subtype3" "subtype1" "subtype1"
[169] "subtype3" "subtype1" "subtype1" "subtype4" "subtype4" "subtype1"
[175] "subtype1" "subtype4" "subtype3" "subtype2" "subtype1" "subtype3"
[181] "subtype4" "subtype3" "subtype4" "subtype1" "subtype1"
  [1] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype4"
  [7] "subtype3" "subtype2" "subtype4" "subtype2" "subtype2" "subtype1"
 [13] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype4"
 [19] "subtype2" "subtype3" "subtype3" "subtype1" "subtype2" "subtype3"
 [25] "subtype4" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
 [31] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
 [37] "subtype4" "subtype4" "subtype2" "subtype2" "subtype4" "subtype2"
 [43] "subtype2" "subtype4" "subtype3" "subtype2" "subtype2" "subtype4"
 [49] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [55] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
 [61] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
 [67] "subtype2" "subtype1" "subtype1" "subtype3" "subtype3" "subtype1"
 [73] "subtype3" "subtype2" "subtype4" "subtype2" "subtype2" "subtype2"
 [79] "subtype2" "subtype4" "subtype3" "subtype2" "subtype2" "subtype2"
 [85] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype4"
 [91] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype4"
 [97] "subtype4" "subtype3" "subtype4" "subtype4" "subtype2" "subtype1"
[103] "subtype1" "subtype4" "subtype1" "subtype4" "subtype3" "subtype1"
[109] "subtype4" "subtype1" "subtype3" "subtype1" "subtype4" "subtype4"
[115] "subtype4" "subtype4" "subtype3" "subtype3" "subtype3" "subtype3"
[121] "subtype4" "subtype1" "subtype4" "subtype1" "subtype4" "subtype2"
[127] "subtype3" "subtype3" "subtype1" "subtype2" "subtype4" "subtype2"
[133] "subtype1" "subtype1" "subtype4" "subtype1" "subtype2" "subtype4"
[139] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
[145] "subtype4" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
[151] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype4"
[157] "subtype2" "subtype3" "subtype4" "subtype2" "subtype2" "subtype1"
[163] "subtype1" "subtype4" "subtype2" "subtype3" "subtype1" "subtype1"
[169] "subtype3" "subtype1" "subtype1" "subtype4" "subtype4" "subtype1"
[175] "subtype1" "subtype4" "subtype3" "subtype2" "subtype1" "subtype3"
[181] "subtype4" "subtype3" "subtype4" "subtype1" "subtype1"
  [1] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype4"
  [7] "subtype3" "subtype2" "subtype4" "subtype2" "subtype2" "subtype1"
 [13] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype4"
 [19] "subtype2" "subtype3" "subtype3" "subtype1" "subtype2" "subtype3"
 [25] "subtype4" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
 [31] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
 [37] "subtype4" "subtype4" "subtype2" "subtype2" "subtype4" "subtype2"
 [43] "subtype2" "subtype4" "subtype3" "subtype2" "subtype2" "subtype4"
 [49] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [55] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
 [61] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
 [67] "subtype2" "subtype1" "subtype1" "subtype3" "subtype3" "subtype1"
 [73] "subtype3" "subtype2" "subtype4" "subtype2" "subtype2" "subtype2"
 [79] "subtype2" "subtype4" "subtype3" "subtype2" "subtype2" "subtype2"
 [85] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype4"
 [91] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype4"
 [97] "subtype4" "subtype3" "subtype4" "subtype4" "subtype2" "subtype1"
[103] "subtype1" "subtype4" "subtype1" "subtype4" "subtype3" "subtype1"
[109] "subtype4" "subtype1" "subtype3" "subtype1" "subtype4" "subtype4"
[115] "subtype4" "subtype4" "subtype3" "subtype3" "subtype3" "subtype3"
[121] "subtype4" "subtype1" "subtype4" "subtype1" "subtype4" "subtype2"
[127] "subtype3" "subtype3" "subtype1" "subtype2" "subtype4" "subtype2"
[133] "subtype1" "subtype1" "subtype4" "subtype1" "subtype2" "subtype4"
[139] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
[145] "subtype4" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
[151] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype4"
[157] "subtype2" "subtype3" "subtype4" "subtype2" "subtype2" "subtype1"
[163] "subtype1" "subtype4" "subtype2" "subtype3" "subtype1" "subtype1"
[169] "subtype3" "subtype1" "subtype1" "subtype4" "subtype4" "subtype1"
[175] "subtype1" "subtype4" "subtype3" "subtype2" "subtype1" "subtype3"
[181] "subtype4" "subtype3" "subtype4" "subtype1" "subtype1"
D5V2, continuous
          vv
clus       T2 T3 T4
  subtype1 18 19  1
  subtype2 27 34  2
  subtype3 15 30  1
  subtype4 20 15  1
D5V3, multiclass
D5V4, binary
          cls
clus        0  1
  subtype1 29  2
  subtype2 53  6
  subtype3 33  8
  subtype4 30  1
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   29    2
  subtype2   53    6
  subtype3   33    8
  subtype4   30    1
   clus
vv  subtype1 subtype2 subtype3 subtype4
  0       29       53       33       30
  1        2        6        8        1
          vv
clus       R0 R1 RX
  subtype1 26 11  0
  subtype2 50  9  1
  subtype3 33  9  1
  subtype4 26  8  1
D5V5, multiclass
D5V6, continuous
D5V7, continuous
D5V8, continuous
D5V9, continuous
D5V10, continuous
D5V11, continuous
D5V12, continuous
D5V13, continuous
D5V14, continuous

Clustering(6) Variable = MRNASEQ_CHIERARCHICAL
D6V1, survival
          sevent
clus2       0  1
  subtype1 69  0
  subtype2 60  1
  subtype3 46  0
  subtype4  9  0
subtype1 subtype2 subtype3 subtype4 
      69       61       46        9 
subtype1 subtype2 subtype3 subtype4 
       0        1        0        0 
$subtype1
TCGA-CH-5738 TCGA-CH-5743 TCGA-CH-5745 TCGA-CH-5746 TCGA-CH-5762 TCGA-CH-5763 
        6.97        13.94         2.99        24.03        44.02        12.00 
TCGA-CH-5771 TCGA-CH-5789 TCGA-CH-5792 TCGA-EJ-5495 TCGA-EJ-5497 TCGA-EJ-5498 
       12.99         9.96         2.99        33.07        13.02        29.75 
TCGA-EJ-5499 TCGA-EJ-5501 TCGA-EJ-5502 TCGA-EJ-5503 TCGA-EJ-5506 TCGA-EJ-5508 
       17.49        30.77         8.02        23.54        27.19        38.93 
TCGA-EJ-5510 TCGA-EJ-5512 TCGA-EJ-5515 TCGA-EJ-5516 TCGA-EJ-5522 TCGA-EJ-5524 
       36.66        38.53        40.77        46.55        48.07        43.07 
TCGA-EJ-5526 TCGA-EJ-5527 TCGA-EJ-5531 TCGA-EJ-5542 TCGA-EJ-7314 TCGA-EJ-7327 
       38.76        39.75        30.25        29.06         9.70         5.75 
TCGA-EJ-7328 TCGA-EJ-7330 TCGA-EJ-7331 TCGA-EJ-7781 TCGA-EJ-7783 TCGA-EJ-7785 
        5.59         6.28         0.30         5.56         4.31         8.48 
TCGA-EJ-7791 TCGA-EJ-7793 TCGA-EJ-7794 TCGA-EJ-7797 TCGA-EJ-8470 TCGA-EJ-A46B 
       19.59         1.41        23.01        12.13        26.99         5.33 
TCGA-EJ-A46D TCGA-EJ-A46E TCGA-EJ-A46H TCGA-EJ-A46I TCGA-FC-7708 TCGA-G9-6329 
        4.21        17.06         7.50        22.09         1.05        41.62 
TCGA-G9-6336 TCGA-G9-6351 TCGA-G9-6353 TCGA-G9-6356 TCGA-G9-6365 TCGA-G9-6367 
       65.98        46.13        50.66        47.15        44.81        40.18 
TCGA-G9-6370 TCGA-G9-6384 TCGA-G9-6385 TCGA-G9-7522 TCGA-HC-7079 TCGA-HC-7211 
       38.01        25.15        27.29        21.30         2.93         0.99 
TCGA-HC-7233 TCGA-HC-7740 TCGA-HC-7747 TCGA-HC-7748 TCGA-HC-7817 TCGA-HC-7818 
        1.71         1.74         1.87        26.04         1.05         1.48 
TCGA-HI-7170 TCGA-M7-A71Y TCGA-M7-A720 
       62.43         5.16         9.93 

$subtype2
TCGA-CH-5739 TCGA-CH-5740 TCGA-CH-5741 TCGA-CH-5744 TCGA-CH-5750 TCGA-CH-5751 
       22.06         1.02        12.99         1.97        12.99        35.01 
TCGA-CH-5752 TCGA-CH-5753 TCGA-CH-5754 TCGA-CH-5761 TCGA-CH-5764 TCGA-CH-5765 
       30.97         1.02         2.04         0.92         1.02        23.01 
TCGA-CH-5766 TCGA-CH-5768 TCGA-CH-5769 TCGA-CH-5790 TCGA-CH-5791 TCGA-CH-5794 
        1.02        24.03         2.04        32.02        33.01        28.96 
TCGA-EJ-5496 TCGA-EJ-5507 TCGA-EJ-5511 TCGA-EJ-5519 TCGA-EJ-5521 TCGA-EJ-5525 
       19.53        23.90        32.02        43.89        51.88        36.66 
TCGA-EJ-5530 TCGA-EJ-7315 TCGA-EJ-7321 TCGA-EJ-7784 TCGA-EJ-7788 TCGA-EJ-8469 
       41.82         9.50         7.66         5.49         1.71        63.98 
TCGA-EJ-8472 TCGA-EJ-8474 TCGA-EJ-A46F TCGA-G9-6332 TCGA-G9-6342 TCGA-G9-6361 
       66.12        10.32         9.83        65.92        55.76        46.52 
TCGA-G9-6362 TCGA-G9-6363 TCGA-G9-6364 TCGA-G9-6366 TCGA-G9-6371 TCGA-G9-6373 
       47.44        45.30        39.39         3.32        40.31        26.66 
TCGA-G9-6494 TCGA-G9-7525 TCGA-H9-7775 TCGA-HC-7077 TCGA-HC-7209 TCGA-HC-7212 
       58.22        16.83         6.05        65.98         1.02        28.96 
TCGA-HC-7213 TCGA-HC-7230 TCGA-HC-7231 TCGA-HC-7742 TCGA-HC-7744 TCGA-HC-7749 
        1.97         1.68         2.37         1.48         1.68         2.01 
TCGA-HC-7821 TCGA-HC-A48F TCGA-HC-A4ZV TCGA-HI-7168 TCGA-HI-7171 TCGA-J4-8198 
        1.84         1.51         0.76        65.92        66.02         3.22 
TCGA-M7-A71Z 
        6.87 

$subtype3
TCGA-CH-5737 TCGA-CH-5748 TCGA-CH-5767 TCGA-CH-5772 TCGA-CH-5788 TCGA-EJ-5494 
        2.99         1.02        15.06        15.95        26.96        27.12 
TCGA-EJ-5504 TCGA-EJ-5505 TCGA-EJ-5509 TCGA-EJ-5514 TCGA-EJ-5517 TCGA-EJ-5518 
       28.93        30.28        36.03        36.23        47.80        52.27 
TCGA-EJ-5532 TCGA-EJ-7115 TCGA-EJ-7123 TCGA-EJ-7125 TCGA-EJ-7317 TCGA-EJ-7782 
       48.03        26.99        48.99        61.15         9.37         2.10 
TCGA-EJ-7786 TCGA-EJ-7789 TCGA-EJ-7792 TCGA-FC-7961 TCGA-FC-A5OB TCGA-G9-6333 
       14.53        18.15        17.29         2.30         8.98        65.95 
TCGA-G9-6338 TCGA-G9-6343 TCGA-G9-6369 TCGA-G9-6378 TCGA-G9-6496 TCGA-G9-6499 
       65.98        18.21        39.95        37.97        56.75        50.73 
TCGA-G9-7510 TCGA-G9-7519 TCGA-G9-7521 TCGA-G9-7523 TCGA-HC-7075 TCGA-HC-7078 
       38.96        27.91        15.98        28.14         2.01         5.33 
TCGA-HC-7080 TCGA-HC-7736 TCGA-HC-7737 TCGA-HC-7750 TCGA-HC-7752 TCGA-HC-8216 
        2.01         0.99         2.07         1.12         3.22        22.42 
TCGA-HI-7169 TCGA-J4-8200 TCGA-M7-A721 TCGA-M7-A724 
       64.08        12.30         6.71        15.88 

$subtype4
TCGA-FC-A66V TCGA-FC-A6HD TCGA-G9-6348 TCGA-G9-6377 TCGA-HC-8265 TCGA-HC-A6AL 
        4.01         1.78        49.81        31.50        15.98         2.20 
TCGA-HC-A6AS TCGA-HC-A6HX TCGA-J4-A67N 
        1.45         1.22        16.50 

subtype1 subtype2 subtype3 subtype4 
    0.30     0.76     0.99     1.22 
subtype1 subtype2 subtype3 subtype4 
   65.98    66.12    65.98    49.81 
subtype1 subtype2 subtype3 subtype4 
  19.590   16.830   20.315    4.010 
[1] "0.3 - 66.0 (19.6)" "0.8 - 66.1 (16.8)" "1.0 - 66.0 (20.3)"
[4] "1.2 - 49.8 (4.0)" 
  [1] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
  [7] "subtype2" "subtype1" "subtype1" "subtype3" "subtype2" "subtype2"
 [13] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
 [19] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
 [25] "subtype1" "subtype3" "subtype3" "subtype1" "subtype2" "subtype2"
 [31] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
 [37] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
 [43] "subtype3" "subtype1" "subtype2" "subtype1" "subtype3" "subtype1"
 [49] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
 [55] "subtype3" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
 [61] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype1"
 [67] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype3"
 [73] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [79] "subtype3" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
 [85] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
 [91] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
 [97] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
[103] "subtype3" "subtype4" "subtype4" "subtype1" "subtype2" "subtype3"
[109] "subtype1" "subtype3" "subtype2" "subtype3" "subtype4" "subtype1"
[115] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[121] "subtype1" "subtype2" "subtype1" "subtype3" "subtype1" "subtype2"
[127] "subtype2" "subtype4" "subtype3" "subtype1" "subtype1" "subtype2"
[133] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[139] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[145] "subtype1" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
[151] "subtype2" "subtype2" "subtype1" "subtype3" "subtype3" "subtype1"
[157] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype3"
[163] "subtype3" "subtype1" "subtype1" "subtype2" "subtype3" "subtype4"
[169] "subtype2" "subtype2" "subtype4" "subtype4" "subtype4" "subtype2"
[175] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype4"
[181] "subtype1" "subtype2" "subtype1" "subtype3" "subtype3"
  [1] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
  [7] "subtype2" "subtype1" "subtype1" "subtype3" "subtype2" "subtype2"
 [13] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
 [19] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
 [25] "subtype1" "subtype3" "subtype3" "subtype1" "subtype2" "subtype2"
 [31] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
 [37] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
 [43] "subtype3" "subtype1" "subtype2" "subtype1" "subtype3" "subtype1"
 [49] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
 [55] "subtype3" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
 [61] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype1"
 [67] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype3"
 [73] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [79] "subtype3" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
 [85] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
 [91] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
 [97] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
[103] "subtype3" "subtype4" "subtype4" "subtype1" "subtype2" "subtype3"
[109] "subtype1" "subtype3" "subtype2" "subtype3" "subtype4" "subtype1"
[115] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[121] "subtype1" "subtype2" "subtype1" "subtype3" "subtype1" "subtype2"
[127] "subtype2" "subtype4" "subtype3" "subtype1" "subtype1" "subtype2"
[133] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[139] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[145] "subtype1" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
[151] "subtype2" "subtype2" "subtype1" "subtype3" "subtype3" "subtype1"
[157] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype3"
[163] "subtype3" "subtype1" "subtype1" "subtype2" "subtype3" "subtype4"
[169] "subtype2" "subtype2" "subtype4" "subtype4" "subtype4" "subtype2"
[175] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype4"
[181] "subtype1" "subtype2" "subtype1" "subtype3" "subtype3"
  [1] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
  [7] "subtype2" "subtype1" "subtype1" "subtype3" "subtype2" "subtype2"
 [13] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
 [19] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
 [25] "subtype1" "subtype3" "subtype3" "subtype1" "subtype2" "subtype2"
 [31] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
 [37] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
 [43] "subtype3" "subtype1" "subtype2" "subtype1" "subtype3" "subtype1"
 [49] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
 [55] "subtype3" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
 [61] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype1"
 [67] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype3"
 [73] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [79] "subtype3" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
 [85] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
 [91] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
 [97] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
[103] "subtype3" "subtype4" "subtype4" "subtype1" "subtype2" "subtype3"
[109] "subtype1" "subtype3" "subtype2" "subtype3" "subtype4" "subtype1"
[115] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[121] "subtype1" "subtype2" "subtype1" "subtype3" "subtype1" "subtype2"
[127] "subtype2" "subtype4" "subtype3" "subtype1" "subtype1" "subtype2"
[133] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[139] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[145] "subtype1" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
[151] "subtype2" "subtype2" "subtype1" "subtype3" "subtype3" "subtype1"
[157] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype3"
[163] "subtype3" "subtype1" "subtype1" "subtype2" "subtype3" "subtype4"
[169] "subtype2" "subtype2" "subtype4" "subtype4" "subtype4" "subtype2"
[175] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype4"
[181] "subtype1" "subtype2" "subtype1" "subtype3" "subtype3"
D6V2, continuous
          vv
clus       T2 T3 T4
  subtype1 32 34  1
  subtype2 17 41  3
  subtype3 26 19  1
  subtype4  5  4  0
D6V3, multiclass
D6V4, binary
          cls
clus        0  1
  subtype1 57  3
  subtype2 43 10
  subtype3 36  4
  subtype4  9  0
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   57    3
  subtype2   43   10
  subtype3   36    4
  subtype4    9    0
   clus
vv  subtype1 subtype2 subtype3 subtype4
  0       57       43       36        9
  1        3       10        4        0
          vv
clus       R0 R1 RX
  subtype1 52 11  2
  subtype2 43 13  1
  subtype3 32 12  0
  subtype4  8  1  0
D6V5, multiclass
D6V6, continuous
D6V7, continuous
D6V8, continuous
D6V9, continuous
D6V10, continuous
D6V11, continuous
D6V12, continuous
D6V13, continuous
D6V14, continuous

Clustering(7) Variable = MIRSEQ_CNMF
D7V1, survival
          sevent
clus2       0  1
  subtype1 66  0
  subtype2 21  0
  subtype3 10  0
  subtype4 15  0
  subtype5 66  1
subtype1 subtype2 subtype3 subtype4 subtype5 
      66       21       10       15       67 
subtype1 subtype2 subtype3 subtype4 subtype5 
       0        0        0        0        1 
$subtype1
TCGA-CH-5737 TCGA-CH-5739 TCGA-CH-5740 TCGA-CH-5741 TCGA-CH-5744 TCGA-CH-5745 
        2.99        22.06         1.02        12.99         1.97         2.99 
TCGA-CH-5748 TCGA-CH-5750 TCGA-CH-5752 TCGA-CH-5753 TCGA-CH-5754 TCGA-CH-5761 
        1.02        12.99        30.97         1.02         2.04         0.92 
TCGA-CH-5764 TCGA-CH-5765 TCGA-CH-5766 TCGA-CH-5767 TCGA-CH-5768 TCGA-CH-5769 
        1.02        23.01         1.02        15.06        24.03         2.04 
TCGA-CH-5771 TCGA-CH-5788 TCGA-CH-5789 TCGA-CH-5790 TCGA-CH-5791 TCGA-CH-5792 
       12.99        26.96         9.96        32.02        33.01         2.99 
TCGA-CH-5794 TCGA-EJ-5495 TCGA-EJ-5496 TCGA-EJ-5497 TCGA-EJ-5499 TCGA-EJ-5501 
       28.96        33.07        19.53        13.02        17.49        30.77 
TCGA-EJ-5502 TCGA-EJ-5504 TCGA-EJ-5505 TCGA-EJ-5507 TCGA-EJ-5508 TCGA-EJ-5509 
        8.02        28.93        30.28        23.90        38.93        36.03 
TCGA-EJ-5510 TCGA-EJ-5511 TCGA-EJ-5516 TCGA-EJ-5517 TCGA-EJ-5518 TCGA-EJ-5519 
       36.66        32.02        46.55        47.80        52.27        43.89 
TCGA-EJ-5521 TCGA-EJ-5524 TCGA-EJ-5525 TCGA-EJ-5526 TCGA-EJ-5530 TCGA-EJ-5531 
       51.88        43.07        36.66        38.76        41.82        30.25 
TCGA-EJ-5532 TCGA-EJ-5542 TCGA-G9-6332 TCGA-G9-6348 TCGA-G9-6356 TCGA-G9-6362 
       48.03        29.06        65.92        49.81        47.15        47.44 
TCGA-G9-6363 TCGA-G9-6364 TCGA-G9-6367 TCGA-G9-6370 TCGA-G9-6371 TCGA-G9-6373 
       45.30        39.39        40.18        38.01        40.31        26.66 
TCGA-G9-6378 TCGA-G9-6384 TCGA-G9-6385 TCGA-G9-6494 TCGA-G9-6496 TCGA-HC-A48F 
       37.97        25.15        27.29        58.22        56.75         1.51 

$subtype2
TCGA-CH-5738 TCGA-CH-5743 TCGA-CH-5746 TCGA-CH-5762 TCGA-CH-5763 TCGA-EJ-5498 
        6.97        13.94        24.03        44.02        12.00        29.75 
TCGA-EJ-5503 TCGA-EJ-5506 TCGA-EJ-5512 TCGA-EJ-5515 TCGA-EJ-5522 TCGA-EJ-5527 
       23.54        27.19        38.53        40.77        48.07        39.75 
TCGA-EJ-7797 TCGA-EJ-8472 TCGA-EJ-A46B TCGA-EJ-A46D TCGA-EJ-A46E TCGA-G9-6329 
       12.13        66.12         5.33         4.21        17.06        41.62 
TCGA-G9-6336 TCGA-G9-6353 TCGA-G9-7522 
       65.98        50.66        21.30 

$subtype3
TCGA-CH-5772 TCGA-EJ-5514 TCGA-EJ-7791 TCGA-EJ-7792 TCGA-EJ-A46H TCGA-G9-6365 
       15.95        36.23        19.59        17.29         7.50        44.81 
TCGA-G9-7519 TCGA-G9-7523 TCGA-HC-7740 TCGA-HI-7169 
       27.91        28.14         1.74        64.08 

$subtype4
TCGA-EJ-5494 TCGA-EJ-A46F TCGA-EJ-A46I TCGA-FC-7961 TCGA-FC-A5OB TCGA-FC-A66V 
       27.12         9.83        22.09         2.30         8.98         4.01 
TCGA-FC-A6HD TCGA-HC-7817 TCGA-HC-8216 TCGA-HC-A4ZV TCGA-HC-A6AL TCGA-HC-A6AS 
        1.78         1.05        22.42         0.76         2.20         1.45 
TCGA-HC-A6HX TCGA-J4-8200 TCGA-J4-A67N 
        1.22        12.30        16.50 

$subtype5
TCGA-EJ-7115 TCGA-EJ-7123 TCGA-EJ-7125 TCGA-EJ-7314 TCGA-EJ-7315 TCGA-EJ-7317 
       26.99        48.99        61.15         9.70         9.50         9.37 
TCGA-EJ-7321 TCGA-EJ-7327 TCGA-EJ-7328 TCGA-EJ-7330 TCGA-EJ-7331 TCGA-EJ-7781 
        7.66         5.75         5.59         6.28         0.30         5.56 
TCGA-EJ-7782 TCGA-EJ-7783 TCGA-EJ-7784 TCGA-EJ-7785 TCGA-EJ-7786 TCGA-EJ-7788 
        2.10         4.31         5.49         8.48        14.53         1.71 
TCGA-EJ-7789 TCGA-EJ-7793 TCGA-EJ-7794 TCGA-EJ-8469 TCGA-EJ-8470 TCGA-EJ-8474 
       18.15         1.41        23.01        63.98        26.99        10.32 
TCGA-FC-7708 TCGA-G9-6333 TCGA-G9-6338 TCGA-G9-6342 TCGA-G9-6343 TCGA-G9-6351 
        1.05        65.95        65.98        55.76        18.21        46.13 
TCGA-G9-6361 TCGA-G9-6366 TCGA-G9-6369 TCGA-G9-6377 TCGA-G9-6499 TCGA-G9-7510 
       46.52         3.32        39.95        31.50        50.73        38.96 
TCGA-G9-7521 TCGA-G9-7525 TCGA-H9-7775 TCGA-HC-7075 TCGA-HC-7077 TCGA-HC-7078 
       15.98        16.83         6.05         2.01        65.98         5.33 
TCGA-HC-7079 TCGA-HC-7080 TCGA-HC-7209 TCGA-HC-7211 TCGA-HC-7212 TCGA-HC-7213 
        2.93         2.01         1.02         0.99        28.96         1.97 
TCGA-HC-7230 TCGA-HC-7231 TCGA-HC-7233 TCGA-HC-7736 TCGA-HC-7737 TCGA-HC-7742 
        1.68         2.37         1.71         0.99         2.07         1.48 
TCGA-HC-7744 TCGA-HC-7747 TCGA-HC-7748 TCGA-HC-7749 TCGA-HC-7750 TCGA-HC-7752 
        1.68         1.87        26.04         2.01         1.12         3.22 
TCGA-HC-7818 TCGA-HC-7821 TCGA-HC-8265 TCGA-HI-7168 TCGA-HI-7170 TCGA-HI-7171 
        1.48         1.84        15.98        65.92        62.43        66.02 
TCGA-J4-8198 
        3.22 

subtype1 subtype2 subtype3 subtype4 subtype5 
    0.92     4.21     1.74     0.76     0.30 
subtype1 subtype2 subtype3 subtype4 subtype5 
   65.92    66.12    64.08    27.12    66.02 
subtype1 subtype2 subtype3 subtype4 subtype5 
  29.655   27.190   23.750    4.010    6.280 
[1] "0.9 - 65.9 (29.7)" "4.2 - 66.1 (27.2)" "1.7 - 64.1 (23.8)"
[4] "0.8 - 27.1 (4.0)"  "0.3 - 66.0 (6.3)" 
  [1] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
  [7] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
 [13] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
 [19] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [25] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [31] "subtype1" "subtype4" "subtype1" "subtype1" "subtype1" "subtype2"
 [37] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
 [43] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [49] "subtype2" "subtype3" "subtype2" "subtype1" "subtype1" "subtype1"
 [55] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
 [61] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype5"
 [67] "subtype5" "subtype5" "subtype5" "subtype5" "subtype5" "subtype5"
 [73] "subtype5" "subtype5" "subtype5" "subtype5" "subtype5" "subtype5"
 [79] "subtype5" "subtype5" "subtype5" "subtype5" "subtype5" "subtype5"
 [85] "subtype3" "subtype3" "subtype5" "subtype5" "subtype2" "subtype5"
 [91] "subtype5" "subtype2" "subtype5" "subtype2" "subtype2" "subtype2"
 [97] "subtype4" "subtype3" "subtype4" "subtype5" "subtype4" "subtype4"
[103] "subtype4" "subtype4" "subtype2" "subtype1" "subtype5" "subtype2"
[109] "subtype5" "subtype5" "subtype5" "subtype1" "subtype5" "subtype2"
[115] "subtype1" "subtype5" "subtype1" "subtype1" "subtype1" "subtype3"
[121] "subtype5" "subtype1" "subtype5" "subtype1" "subtype1" "subtype1"
[127] "subtype5" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[133] "subtype5" "subtype5" "subtype3" "subtype5" "subtype2" "subtype3"
[139] "subtype5" "subtype5" "subtype5" "subtype5" "subtype5" "subtype5"
[145] "subtype5" "subtype5" "subtype5" "subtype5" "subtype5" "subtype5"
[151] "subtype5" "subtype5" "subtype5" "subtype5" "subtype3" "subtype5"
[157] "subtype5" "subtype5" "subtype5" "subtype5" "subtype5" "subtype5"
[163] "subtype4" "subtype5" "subtype5" "subtype4" "subtype5" "subtype1"
[169] "subtype4" "subtype4" "subtype4" "subtype4" "subtype5" "subtype3"
[175] "subtype5" "subtype5" "subtype5" "subtype4" "subtype4"
  [1] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
  [7] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
 [13] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
 [19] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [25] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [31] "subtype1" "subtype4" "subtype1" "subtype1" "subtype1" "subtype2"
 [37] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
 [43] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [49] "subtype2" "subtype3" "subtype2" "subtype1" "subtype1" "subtype1"
 [55] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
 [61] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype5"
 [67] "subtype5" "subtype5" "subtype5" "subtype5" "subtype5" "subtype5"
 [73] "subtype5" "subtype5" "subtype5" "subtype5" "subtype5" "subtype5"
 [79] "subtype5" "subtype5" "subtype5" "subtype5" "subtype5" "subtype5"
 [85] "subtype3" "subtype3" "subtype5" "subtype5" "subtype2" "subtype5"
 [91] "subtype5" "subtype2" "subtype5" "subtype2" "subtype2" "subtype2"
 [97] "subtype4" "subtype3" "subtype4" "subtype5" "subtype4" "subtype4"
[103] "subtype4" "subtype4" "subtype2" "subtype1" "subtype5" "subtype2"
[109] "subtype5" "subtype5" "subtype5" "subtype1" "subtype5" "subtype2"
[115] "subtype1" "subtype5" "subtype1" "subtype1" "subtype1" "subtype3"
[121] "subtype5" "subtype1" "subtype5" "subtype1" "subtype1" "subtype1"
[127] "subtype5" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[133] "subtype5" "subtype5" "subtype3" "subtype5" "subtype2" "subtype3"
[139] "subtype5" "subtype5" "subtype5" "subtype5" "subtype5" "subtype5"
[145] "subtype5" "subtype5" "subtype5" "subtype5" "subtype5" "subtype5"
[151] "subtype5" "subtype5" "subtype5" "subtype5" "subtype3" "subtype5"
[157] "subtype5" "subtype5" "subtype5" "subtype5" "subtype5" "subtype5"
[163] "subtype4" "subtype5" "subtype5" "subtype4" "subtype5" "subtype1"
[169] "subtype4" "subtype4" "subtype4" "subtype4" "subtype5" "subtype3"
[175] "subtype5" "subtype5" "subtype5" "subtype4" "subtype4"
  [1] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
  [7] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
 [13] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
 [19] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [25] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [31] "subtype1" "subtype4" "subtype1" "subtype1" "subtype1" "subtype2"
 [37] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
 [43] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [49] "subtype2" "subtype3" "subtype2" "subtype1" "subtype1" "subtype1"
 [55] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
 [61] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype5"
 [67] "subtype5" "subtype5" "subtype5" "subtype5" "subtype5" "subtype5"
 [73] "subtype5" "subtype5" "subtype5" "subtype5" "subtype5" "subtype5"
 [79] "subtype5" "subtype5" "subtype5" "subtype5" "subtype5" "subtype5"
 [85] "subtype3" "subtype3" "subtype5" "subtype5" "subtype2" "subtype5"
 [91] "subtype5" "subtype2" "subtype5" "subtype2" "subtype2" "subtype2"
 [97] "subtype4" "subtype3" "subtype4" "subtype5" "subtype4" "subtype4"
[103] "subtype4" "subtype4" "subtype2" "subtype1" "subtype5" "subtype2"
[109] "subtype5" "subtype5" "subtype5" "subtype1" "subtype5" "subtype2"
[115] "subtype1" "subtype5" "subtype1" "subtype1" "subtype1" "subtype3"
[121] "subtype5" "subtype1" "subtype5" "subtype1" "subtype1" "subtype1"
[127] "subtype5" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[133] "subtype5" "subtype5" "subtype3" "subtype5" "subtype2" "subtype3"
[139] "subtype5" "subtype5" "subtype5" "subtype5" "subtype5" "subtype5"
[145] "subtype5" "subtype5" "subtype5" "subtype5" "subtype5" "subtype5"
[151] "subtype5" "subtype5" "subtype5" "subtype5" "subtype3" "subtype5"
[157] "subtype5" "subtype5" "subtype5" "subtype5" "subtype5" "subtype5"
[163] "subtype4" "subtype5" "subtype5" "subtype4" "subtype5" "subtype1"
[169] "subtype4" "subtype4" "subtype4" "subtype4" "subtype5" "subtype3"
[175] "subtype5" "subtype5" "subtype5" "subtype4" "subtype4"
D7V2, continuous
          vv
clus       T2 T3 T4
  subtype1 23 40  3
  subtype2 10  9  0
  subtype3  6  3  1
  subtype4  4 11  0
  subtype5 34 33  0
D7V3, multiclass
D7V4, binary
          cls
clus        0  1
  subtype1 51 11
  subtype2 17  1
  subtype3  9  0
  subtype4 13  1
  subtype5 53  3
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   51   11
  subtype2   17    1
  subtype3    9    0
  subtype4   13    1
  subtype5   53    3
          vv
clus       R0 R1 RX
  subtype1 50 16  0
  subtype2 15  4  1
  subtype3  6  4  0
  subtype4 11  2  0
  subtype5 50  8  2
D7V5, multiclass
D7V6, continuous
D7V7, continuous
D7V8, continuous
D7V9, continuous
D7V10, continuous
D7V11, continuous
D7V12, continuous
D7V13, continuous
D7V14, continuous

Clustering(8) Variable = MIRSEQ_CHIERARCHICAL
D8V1, survival
          sevent
clus2       0  1
  subtype1 68  0
  subtype2 95  1
  subtype3 15  0
subtype1 subtype2 subtype3 
      68       96       15 
subtype1 subtype2 subtype3 
       0        1        0 
$subtype1
TCGA-CH-5738 TCGA-CH-5740 TCGA-CH-5741 TCGA-CH-5743 TCGA-CH-5744 TCGA-CH-5745 
        6.97         1.02        12.99        13.94         1.97         2.99 
TCGA-CH-5746 TCGA-CH-5750 TCGA-CH-5752 TCGA-CH-5753 TCGA-CH-5754 TCGA-CH-5761 
       24.03        12.99        30.97         1.02         2.04         0.92 
TCGA-CH-5762 TCGA-CH-5763 TCGA-CH-5764 TCGA-CH-5765 TCGA-CH-5766 TCGA-CH-5768 
       44.02        12.00         1.02        23.01         1.02        24.03 
TCGA-CH-5769 TCGA-CH-5771 TCGA-CH-5788 TCGA-CH-5789 TCGA-CH-5790 TCGA-CH-5791 
        2.04        12.99        26.96         9.96        32.02        33.01 
TCGA-CH-5792 TCGA-CH-5794 TCGA-EJ-5495 TCGA-EJ-5496 TCGA-EJ-5497 TCGA-EJ-5498 
        2.99        28.96        33.07        19.53        13.02        29.75 
TCGA-EJ-5499 TCGA-EJ-5501 TCGA-EJ-5503 TCGA-EJ-5505 TCGA-EJ-5506 TCGA-EJ-5507 
       17.49        30.77        23.54        30.28        27.19        23.90 
TCGA-EJ-5508 TCGA-EJ-5509 TCGA-EJ-5510 TCGA-EJ-5512 TCGA-EJ-5515 TCGA-EJ-5516 
       38.93        36.03        36.66        38.53        40.77        46.55 
TCGA-EJ-5519 TCGA-EJ-5521 TCGA-EJ-5522 TCGA-EJ-5524 TCGA-EJ-5525 TCGA-EJ-5526 
       43.89        51.88        48.07        43.07        36.66        38.76 
TCGA-EJ-5527 TCGA-EJ-5531 TCGA-EJ-5542 TCGA-EJ-8472 TCGA-EJ-A46H TCGA-G9-6329 
       39.75        30.25        29.06        66.12         7.50        41.62 
TCGA-G9-6332 TCGA-G9-6336 TCGA-G9-6348 TCGA-G9-6356 TCGA-G9-6362 TCGA-G9-6364 
       65.92        65.98        49.81        47.15        47.44        39.39 
TCGA-G9-6367 TCGA-G9-6370 TCGA-G9-6371 TCGA-G9-6373 TCGA-G9-6384 TCGA-G9-6496 
       40.18        38.01        40.31        26.66        25.15        56.75 
TCGA-HC-A48F TCGA-HC-A6HX 
        1.51         1.22 

$subtype2
TCGA-CH-5737 TCGA-CH-5739 TCGA-CH-5748 TCGA-CH-5767 TCGA-CH-5772 TCGA-EJ-5502 
        2.99        22.06         1.02        15.06        15.95         8.02 
TCGA-EJ-5504 TCGA-EJ-5511 TCGA-EJ-5514 TCGA-EJ-5517 TCGA-EJ-5518 TCGA-EJ-5530 
       28.93        32.02        36.23        47.80        52.27        41.82 
TCGA-EJ-5532 TCGA-EJ-7115 TCGA-EJ-7123 TCGA-EJ-7125 TCGA-EJ-7314 TCGA-EJ-7315 
       48.03        26.99        48.99        61.15         9.70         9.50 
TCGA-EJ-7317 TCGA-EJ-7321 TCGA-EJ-7327 TCGA-EJ-7328 TCGA-EJ-7330 TCGA-EJ-7331 
        9.37         7.66         5.75         5.59         6.28         0.30 
TCGA-EJ-7781 TCGA-EJ-7782 TCGA-EJ-7783 TCGA-EJ-7784 TCGA-EJ-7785 TCGA-EJ-7786 
        5.56         2.10         4.31         5.49         8.48        14.53 
TCGA-EJ-7788 TCGA-EJ-7789 TCGA-EJ-7791 TCGA-EJ-7792 TCGA-EJ-7793 TCGA-EJ-7794 
        1.71        18.15        19.59        17.29         1.41        23.01 
TCGA-EJ-7797 TCGA-EJ-8469 TCGA-EJ-8470 TCGA-EJ-8474 TCGA-EJ-A46D TCGA-EJ-A46E 
       12.13        63.98        26.99        10.32         4.21        17.06 
TCGA-FC-7708 TCGA-G9-6333 TCGA-G9-6338 TCGA-G9-6342 TCGA-G9-6343 TCGA-G9-6351 
        1.05        65.95        65.98        55.76        18.21        46.13 
TCGA-G9-6353 TCGA-G9-6361 TCGA-G9-6363 TCGA-G9-6365 TCGA-G9-6366 TCGA-G9-6377 
       50.66        46.52        45.30        44.81         3.32        31.50 
TCGA-G9-6378 TCGA-G9-6385 TCGA-G9-6494 TCGA-G9-6499 TCGA-G9-7510 TCGA-G9-7519 
       37.97        27.29        58.22        50.73        38.96        27.91 
TCGA-G9-7521 TCGA-G9-7522 TCGA-G9-7523 TCGA-G9-7525 TCGA-H9-7775 TCGA-HC-7075 
       15.98        21.30        28.14        16.83         6.05         2.01 
TCGA-HC-7077 TCGA-HC-7078 TCGA-HC-7079 TCGA-HC-7080 TCGA-HC-7209 TCGA-HC-7211 
       65.98         5.33         2.93         2.01         1.02         0.99 
TCGA-HC-7212 TCGA-HC-7213 TCGA-HC-7230 TCGA-HC-7231 TCGA-HC-7233 TCGA-HC-7736 
       28.96         1.97         1.68         2.37         1.71         0.99 
TCGA-HC-7737 TCGA-HC-7740 TCGA-HC-7742 TCGA-HC-7744 TCGA-HC-7747 TCGA-HC-7748 
        2.07         1.74         1.48         1.68         1.87        26.04 
TCGA-HC-7749 TCGA-HC-7750 TCGA-HC-7752 TCGA-HC-7818 TCGA-HC-7821 TCGA-HC-8265 
        2.01         1.12         3.22         1.48         1.84        15.98 
TCGA-HI-7168 TCGA-HI-7169 TCGA-HI-7170 TCGA-HI-7171 TCGA-J4-8198 TCGA-J4-8200 
       65.92        64.08        62.43        66.02         3.22        12.30 

$subtype3
TCGA-EJ-5494 TCGA-EJ-A46B TCGA-EJ-A46F TCGA-EJ-A46I TCGA-FC-7961 TCGA-FC-A5OB 
       27.12         5.33         9.83        22.09         2.30         8.98 
TCGA-FC-A66V TCGA-FC-A6HD TCGA-G9-6369 TCGA-HC-7817 TCGA-HC-8216 TCGA-HC-A4ZV 
        4.01         1.78        39.95         1.05        22.42         0.76 
TCGA-HC-A6AL TCGA-HC-A6AS TCGA-J4-A67N 
        2.20         1.45        16.50 

subtype1 subtype2 subtype3 
    0.92     0.30     0.76 
subtype1 subtype2 subtype3 
   66.12    66.02    39.95 
subtype1 subtype2 subtype3 
  29.405   14.795    5.330 
[1] "0.9 - 66.1 (29.4)" "0.3 - 66.0 (14.8)" "0.8 - 40.0 (5.3)" 
  [1] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
  [7] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
 [13] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [19] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
 [25] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [31] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
 [37] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
 [43] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
 [49] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
 [55] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [61] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
 [67] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [73] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [79] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [85] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [91] "subtype2" "subtype1" "subtype2" "subtype3" "subtype2" "subtype2"
 [97] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
[103] "subtype3" "subtype3" "subtype1" "subtype1" "subtype2" "subtype1"
[109] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[115] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[121] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[127] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[133] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[139] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[145] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[151] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[157] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[163] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype1"
[169] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype2"
[175] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
  [1] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
  [7] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
 [13] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [19] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
 [25] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [31] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
 [37] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
 [43] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
 [49] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
 [55] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [61] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
 [67] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [73] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [79] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [85] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [91] "subtype2" "subtype1" "subtype2" "subtype3" "subtype2" "subtype2"
 [97] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
[103] "subtype3" "subtype3" "subtype1" "subtype1" "subtype2" "subtype1"
[109] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[115] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[121] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[127] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[133] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[139] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[145] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[151] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[157] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[163] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype1"
[169] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype2"
[175] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
  [1] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
  [7] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
 [13] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [19] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
 [25] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [31] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
 [37] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
 [43] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
 [49] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
 [55] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [61] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
 [67] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [73] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [79] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [85] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [91] "subtype2" "subtype1" "subtype2" "subtype3" "subtype2" "subtype2"
 [97] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
[103] "subtype3" "subtype3" "subtype1" "subtype1" "subtype2" "subtype1"
[109] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[115] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[121] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[127] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[133] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[139] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[145] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[151] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[157] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[163] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype1"
[169] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype2"
[175] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
D8V2, continuous
          vv
clus       T2 T3 T4
  subtype1 25 42  0
  subtype2 49 42  4
  subtype3  3 12  0
D8V3, multiclass
D8V4, binary
          cls
clus        0  1
  subtype1 53 11
  subtype2 77  4
  subtype3 13  1
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   53   11
  subtype2   77    4
  subtype3   13    1
   clus
vv  subtype1 subtype2 subtype3
  0       53       77       13
  1       11        4        1
          vv
clus       R0 R1 RX
  subtype1 53 14  1
  subtype2 68 18  2
  subtype3 11  2  0
D8V5, multiclass
D8V6, continuous
D8V7, continuous
D8V8, continuous
D8V9, continuous
D8V10, continuous
D8V11, continuous
D8V12, continuous
D8V13, continuous
D8V14, continuous

Clustering(9) Variable = MIRSEQ_MATURE_CNMF
D9V1, survival
          sevent
clus2       0  1
  subtype1 82  0
  subtype2 78  1
  subtype3 18  0
subtype1 subtype2 subtype3 
      82       79       18 
subtype1 subtype2 subtype3 
       0        1        0 
$subtype1
TCGA-CH-5737 TCGA-CH-5738 TCGA-CH-5740 TCGA-CH-5741 TCGA-CH-5743 TCGA-CH-5744 
        2.99         6.97         1.02        12.99        13.94         1.97 
TCGA-CH-5745 TCGA-CH-5746 TCGA-CH-5748 TCGA-CH-5750 TCGA-CH-5752 TCGA-CH-5753 
        2.99        24.03         1.02        12.99        30.97         1.02 
TCGA-CH-5754 TCGA-CH-5761 TCGA-CH-5762 TCGA-CH-5763 TCGA-CH-5764 TCGA-CH-5765 
        2.04         0.92        44.02        12.00         1.02        23.01 
TCGA-CH-5766 TCGA-CH-5767 TCGA-CH-5768 TCGA-CH-5769 TCGA-CH-5771 TCGA-CH-5772 
        1.02        15.06        24.03         2.04        12.99        15.95 
TCGA-CH-5789 TCGA-CH-5790 TCGA-CH-5791 TCGA-CH-5792 TCGA-CH-5794 TCGA-EJ-5495 
        9.96        32.02        33.01         2.99        28.96        33.07 
TCGA-EJ-5496 TCGA-EJ-5497 TCGA-EJ-5498 TCGA-EJ-5499 TCGA-EJ-5501 TCGA-EJ-5502 
       19.53        13.02        29.75        17.49        30.77         8.02 
TCGA-EJ-5503 TCGA-EJ-5504 TCGA-EJ-5505 TCGA-EJ-5506 TCGA-EJ-5507 TCGA-EJ-5508 
       23.54        28.93        30.28        27.19        23.90        38.93 
TCGA-EJ-5509 TCGA-EJ-5510 TCGA-EJ-5511 TCGA-EJ-5512 TCGA-EJ-5514 TCGA-EJ-5515 
       36.03        36.66        32.02        38.53        36.23        40.77 
TCGA-EJ-5516 TCGA-EJ-5517 TCGA-EJ-5518 TCGA-EJ-5519 TCGA-EJ-5521 TCGA-EJ-5522 
       46.55        47.80        52.27        43.89        51.88        48.07 
TCGA-EJ-5524 TCGA-EJ-5525 TCGA-EJ-5526 TCGA-EJ-5527 TCGA-EJ-5530 TCGA-EJ-5531 
       43.07        36.66        38.76        39.75        41.82        30.25 
TCGA-EJ-5532 TCGA-EJ-5542 TCGA-EJ-8472 TCGA-EJ-A46H TCGA-G9-6329 TCGA-G9-6332 
       48.03        29.06        66.12         7.50        41.62        65.92 
TCGA-G9-6336 TCGA-G9-6348 TCGA-G9-6356 TCGA-G9-6362 TCGA-G9-6363 TCGA-G9-6364 
       65.98        49.81        47.15        47.44        45.30        39.39 
TCGA-G9-6365 TCGA-G9-6367 TCGA-G9-6370 TCGA-G9-6371 TCGA-G9-6373 TCGA-G9-6378 
       44.81        40.18        38.01        40.31        26.66        37.97 
TCGA-G9-6384 TCGA-G9-6385 TCGA-G9-6494 TCGA-G9-6496 
       25.15        27.29        58.22        56.75 

$subtype2
TCGA-CH-5739 TCGA-CH-5788 TCGA-EJ-7115 TCGA-EJ-7123 TCGA-EJ-7125 TCGA-EJ-7314 
       22.06        26.96        26.99        48.99        61.15         9.70 
TCGA-EJ-7315 TCGA-EJ-7317 TCGA-EJ-7321 TCGA-EJ-7327 TCGA-EJ-7328 TCGA-EJ-7330 
        9.50         9.37         7.66         5.75         5.59         6.28 
TCGA-EJ-7331 TCGA-EJ-7781 TCGA-EJ-7782 TCGA-EJ-7783 TCGA-EJ-7784 TCGA-EJ-7785 
        0.30         5.56         2.10         4.31         5.49         8.48 
TCGA-EJ-7786 TCGA-EJ-7788 TCGA-EJ-7789 TCGA-EJ-7791 TCGA-EJ-7792 TCGA-EJ-7793 
       14.53         1.71        18.15        19.59        17.29         1.41 
TCGA-EJ-7794 TCGA-EJ-7797 TCGA-EJ-8469 TCGA-EJ-8470 TCGA-EJ-8474 TCGA-FC-7708 
       23.01        12.13        63.98        26.99        10.32         1.05 
TCGA-G9-6333 TCGA-G9-6338 TCGA-G9-6342 TCGA-G9-6343 TCGA-G9-6351 TCGA-G9-6353 
       65.95        65.98        55.76        18.21        46.13        50.66 
TCGA-G9-6361 TCGA-G9-6366 TCGA-G9-6369 TCGA-G9-6377 TCGA-G9-6499 TCGA-G9-7510 
       46.52         3.32        39.95        31.50        50.73        38.96 
TCGA-G9-7519 TCGA-G9-7521 TCGA-G9-7522 TCGA-G9-7523 TCGA-G9-7525 TCGA-H9-7775 
       27.91        15.98        21.30        28.14        16.83         6.05 
TCGA-HC-7075 TCGA-HC-7077 TCGA-HC-7078 TCGA-HC-7079 TCGA-HC-7080 TCGA-HC-7209 
        2.01        65.98         5.33         2.93         2.01         1.02 
TCGA-HC-7211 TCGA-HC-7212 TCGA-HC-7213 TCGA-HC-7230 TCGA-HC-7231 TCGA-HC-7233 
        0.99        28.96         1.97         1.68         2.37         1.71 
TCGA-HC-7736 TCGA-HC-7737 TCGA-HC-7740 TCGA-HC-7742 TCGA-HC-7744 TCGA-HC-7747 
        0.99         2.07         1.74         1.48         1.68         1.87 
TCGA-HC-7748 TCGA-HC-7749 TCGA-HC-7750 TCGA-HC-7752 TCGA-HC-7818 TCGA-HC-7821 
       26.04         2.01         1.12         3.22         1.48         1.84 
TCGA-HC-8265 TCGA-HC-A48F TCGA-HI-7168 TCGA-HI-7169 TCGA-HI-7170 TCGA-HI-7171 
       15.98         1.51        65.92        64.08        62.43        66.02 
TCGA-J4-8198 
        3.22 

$subtype3
TCGA-EJ-5494 TCGA-EJ-A46B TCGA-EJ-A46D TCGA-EJ-A46E TCGA-EJ-A46F TCGA-EJ-A46I 
       27.12         5.33         4.21        17.06         9.83        22.09 
TCGA-FC-7961 TCGA-FC-A5OB TCGA-FC-A66V TCGA-FC-A6HD TCGA-HC-7817 TCGA-HC-8216 
        2.30         8.98         4.01         1.78         1.05        22.42 
TCGA-HC-A4ZV TCGA-HC-A6AL TCGA-HC-A6AS TCGA-HC-A6HX TCGA-J4-8200 TCGA-J4-A67N 
        0.76         2.20         1.45         1.22        12.30        16.50 

subtype1 subtype2 subtype3 
    0.92     0.30     0.76 
subtype1 subtype2 subtype3 
   66.12    66.02    27.12 
subtype1 subtype2 subtype3 
  30.525    9.500    4.770 
[1] "0.9 - 66.1 (30.5)" "0.3 - 66.0 (9.5)"  "0.8 - 27.1 (4.8)" 
  [1] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
  [7] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [13] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [19] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [25] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
 [31] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
 [37] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [43] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [49] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [55] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [61] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
 [67] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [73] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [79] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [85] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [91] "subtype2" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
 [97] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
[103] "subtype3" "subtype3" "subtype1" "subtype1" "subtype2" "subtype1"
[109] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[115] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[121] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[127] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[133] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[139] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[145] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[151] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[157] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[163] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[169] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[175] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
  [1] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
  [7] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [13] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [19] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [25] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
 [31] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
 [37] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [43] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [49] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [55] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [61] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
 [67] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [73] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [79] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [85] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [91] "subtype2" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
 [97] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
[103] "subtype3" "subtype3" "subtype1" "subtype1" "subtype2" "subtype1"
[109] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[115] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[121] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[127] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[133] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[139] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[145] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[151] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[157] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[163] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[169] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[175] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
  [1] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
  [7] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [13] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [19] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [25] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
 [31] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
 [37] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [43] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [49] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [55] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [61] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
 [67] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [73] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [79] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [85] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [91] "subtype2" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
 [97] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
[103] "subtype3" "subtype3" "subtype1" "subtype1" "subtype2" "subtype1"
[109] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[115] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[121] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[127] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[133] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[139] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[145] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[151] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[157] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[163] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[169] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[175] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
D9V2, continuous
          vv
clus       T2 T3 T4
  subtype1 31 46  4
  subtype2 41 38  0
  subtype3  5 12  0
D9V3, multiclass
D9V4, binary
          cls
clus        0  1
  subtype1 66 10
  subtype2 61  5
  subtype3 16  1
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   66   10
  subtype2   61    5
  subtype3   16    1
   clus
vv  subtype1 subtype2 subtype3
  0       66       61       16
  1       10        5        1
          vv
clus       R0 R1 RX
  subtype1 61 20  1
  subtype2 58 12  2
  subtype3 13  2  0
D9V5, multiclass
D9V6, continuous
D9V7, continuous
D9V8, continuous
D9V9, continuous
D9V10, continuous
D9V11, continuous
D9V12, continuous
D9V13, continuous
D9V14, continuous

Clustering(10) Variable = MIRSEQ_MATURE_CHIERARCHICAL
D10V1, survival
          sevent
clus2       0  1
  subtype1 80  0
  subtype2 80  1
  subtype3 18  0
subtype1 subtype2 subtype3 
      80       81       18 
subtype1 subtype2 subtype3 
       0        1        0 
$subtype1
TCGA-CH-5737 TCGA-CH-5738 TCGA-CH-5739 TCGA-CH-5740 TCGA-CH-5741 TCGA-CH-5743 
        2.99         6.97        22.06         1.02        12.99        13.94 
TCGA-CH-5744 TCGA-CH-5745 TCGA-CH-5746 TCGA-CH-5748 TCGA-CH-5750 TCGA-CH-5752 
        1.97         2.99        24.03         1.02        12.99        30.97 
TCGA-CH-5753 TCGA-CH-5754 TCGA-CH-5761 TCGA-CH-5762 TCGA-CH-5763 TCGA-CH-5764 
        1.02         2.04         0.92        44.02        12.00         1.02 
TCGA-CH-5765 TCGA-CH-5766 TCGA-CH-5767 TCGA-CH-5768 TCGA-CH-5769 TCGA-CH-5771 
       23.01         1.02        15.06        24.03         2.04        12.99 
TCGA-CH-5772 TCGA-CH-5789 TCGA-CH-5790 TCGA-CH-5791 TCGA-CH-5792 TCGA-CH-5794 
       15.95         9.96        32.02        33.01         2.99        28.96 
TCGA-EJ-5495 TCGA-EJ-5496 TCGA-EJ-5497 TCGA-EJ-5498 TCGA-EJ-5499 TCGA-EJ-5501 
       33.07        19.53        13.02        29.75        17.49        30.77 
TCGA-EJ-5502 TCGA-EJ-5503 TCGA-EJ-5504 TCGA-EJ-5505 TCGA-EJ-5506 TCGA-EJ-5507 
        8.02        23.54        28.93        30.28        27.19        23.90 
TCGA-EJ-5508 TCGA-EJ-5509 TCGA-EJ-5510 TCGA-EJ-5511 TCGA-EJ-5512 TCGA-EJ-5514 
       38.93        36.03        36.66        32.02        38.53        36.23 
TCGA-EJ-5515 TCGA-EJ-5516 TCGA-EJ-5517 TCGA-EJ-5518 TCGA-EJ-5519 TCGA-EJ-5521 
       40.77        46.55        47.80        52.27        43.89        51.88 
TCGA-EJ-5522 TCGA-EJ-5524 TCGA-EJ-5525 TCGA-EJ-5526 TCGA-EJ-5527 TCGA-EJ-5530 
       48.07        43.07        36.66        38.76        39.75        41.82 
TCGA-EJ-5531 TCGA-EJ-5532 TCGA-EJ-5542 TCGA-G9-6332 TCGA-G9-6336 TCGA-G9-6348 
       30.25        48.03        29.06        65.92        65.98        49.81 
TCGA-G9-6356 TCGA-G9-6362 TCGA-G9-6363 TCGA-G9-6364 TCGA-G9-6365 TCGA-G9-6367 
       47.15        47.44        45.30        39.39        44.81        40.18 
TCGA-G9-6370 TCGA-G9-6371 TCGA-G9-6373 TCGA-G9-6378 TCGA-G9-6384 TCGA-G9-6385 
       38.01        40.31        26.66        37.97        25.15        27.29 
TCGA-G9-6494 TCGA-G9-6496 
       58.22        56.75 

$subtype2
TCGA-EJ-7115 TCGA-EJ-7123 TCGA-EJ-7125 TCGA-EJ-7314 TCGA-EJ-7315 TCGA-EJ-7317 
       26.99        48.99        61.15         9.70         9.50         9.37 
TCGA-EJ-7321 TCGA-EJ-7327 TCGA-EJ-7328 TCGA-EJ-7330 TCGA-EJ-7331 TCGA-EJ-7781 
        7.66         5.75         5.59         6.28         0.30         5.56 
TCGA-EJ-7782 TCGA-EJ-7783 TCGA-EJ-7784 TCGA-EJ-7785 TCGA-EJ-7786 TCGA-EJ-7788 
        2.10         4.31         5.49         8.48        14.53         1.71 
TCGA-EJ-7789 TCGA-EJ-7791 TCGA-EJ-7792 TCGA-EJ-7793 TCGA-EJ-7794 TCGA-EJ-7797 
       18.15        19.59        17.29         1.41        23.01        12.13 
TCGA-EJ-8469 TCGA-EJ-8470 TCGA-EJ-8472 TCGA-EJ-8474 TCGA-EJ-A46B TCGA-EJ-A46D 
       63.98        26.99        66.12        10.32         5.33         4.21 
TCGA-EJ-A46E TCGA-FC-7708 TCGA-G9-6333 TCGA-G9-6338 TCGA-G9-6342 TCGA-G9-6343 
       17.06         1.05        65.95        65.98        55.76        18.21 
TCGA-G9-6351 TCGA-G9-6353 TCGA-G9-6361 TCGA-G9-6366 TCGA-G9-6369 TCGA-G9-6377 
       46.13        50.66        46.52         3.32        39.95        31.50 
TCGA-G9-6499 TCGA-G9-7510 TCGA-G9-7519 TCGA-G9-7521 TCGA-G9-7522 TCGA-G9-7523 
       50.73        38.96        27.91        15.98        21.30        28.14 
TCGA-G9-7525 TCGA-H9-7775 TCGA-HC-7075 TCGA-HC-7077 TCGA-HC-7078 TCGA-HC-7079 
       16.83         6.05         2.01        65.98         5.33         2.93 
TCGA-HC-7080 TCGA-HC-7209 TCGA-HC-7211 TCGA-HC-7212 TCGA-HC-7213 TCGA-HC-7230 
        2.01         1.02         0.99        28.96         1.97         1.68 
TCGA-HC-7231 TCGA-HC-7233 TCGA-HC-7736 TCGA-HC-7737 TCGA-HC-7740 TCGA-HC-7742 
        2.37         1.71         0.99         2.07         1.74         1.48 
TCGA-HC-7744 TCGA-HC-7747 TCGA-HC-7748 TCGA-HC-7749 TCGA-HC-7750 TCGA-HC-7752 
        1.68         1.87        26.04         2.01         1.12         3.22 
TCGA-HC-7818 TCGA-HC-7821 TCGA-HC-8265 TCGA-HC-A48F TCGA-HI-7168 TCGA-HI-7169 
        1.48         1.84        15.98         1.51        65.92        64.08 
TCGA-HI-7170 TCGA-HI-7171 TCGA-J4-8198 
       62.43        66.02         3.22 

$subtype3
TCGA-CH-5788 TCGA-EJ-5494 TCGA-EJ-A46F TCGA-EJ-A46H TCGA-EJ-A46I TCGA-FC-7961 
       26.96        27.12         9.83         7.50        22.09         2.30 
TCGA-FC-A5OB TCGA-FC-A66V TCGA-FC-A6HD TCGA-G9-6329 TCGA-HC-7817 TCGA-HC-8216 
        8.98         4.01         1.78        41.62         1.05        22.42 
TCGA-HC-A4ZV TCGA-HC-A6AL TCGA-HC-A6AS TCGA-HC-A6HX TCGA-J4-8200 TCGA-J4-A67N 
        0.76         2.20         1.45         1.22        12.30        16.50 

subtype1 subtype2 subtype3 
    0.92     0.30     0.76 
subtype1 subtype2 subtype3 
   65.98    66.12    41.62 
subtype1 subtype2 subtype3 
  30.265    9.370    8.240 
[1] "0.9 - 66.0 (30.3)" "0.3 - 66.1 (9.4)"  "0.8 - 41.6 (8.2)" 
  [1] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
  [7] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [13] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [19] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [25] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
 [31] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
 [37] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [43] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [49] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [55] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [61] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
 [67] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [73] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [79] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [85] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [91] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [97] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[103] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype1"
[109] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[115] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[121] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[127] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[133] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[139] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[145] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[151] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[157] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[163] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[169] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[175] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
  [1] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
  [7] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [13] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [19] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [25] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
 [31] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
 [37] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [43] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [49] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [55] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [61] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
 [67] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [73] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [79] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [85] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [91] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [97] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[103] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype1"
[109] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[115] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[121] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[127] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[133] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[139] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[145] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[151] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[157] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[163] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[169] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[175] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
  [1] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
  [7] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [13] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [19] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [25] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
 [31] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
 [37] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [43] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [49] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [55] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [61] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
 [67] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [73] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [79] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [85] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [91] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [97] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[103] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype1"
[109] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[115] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[121] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[127] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[133] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[139] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[145] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[151] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[157] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[163] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[169] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[175] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
D10V2, continuous
          vv
clus       T2 T3 T4
  subtype1 29 46  4
  subtype2 42 38  0
  subtype3  6 12  0
D10V3, multiclass
D10V4, binary
          cls
clus        0  1
  subtype1 65 10
  subtype2 64  4
  subtype3 14  2
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   65   10
  subtype2   64    4
  subtype3   14    2
   clus
vv  subtype1 subtype2 subtype3
  0       65       64       14
  1       10        4        2
          vv
clus       R0 R1 RX
  subtype1 59 20  1
  subtype2 59 12  2
  subtype3 14  2  0
D10V5, multiclass
D10V6, continuous
D10V7, continuous
D10V8, continuous
D10V9, continuous
D10V10, continuous
D10V11, continuous
D10V12, continuous
D10V13, continuous
D10V14, continuous
> q(save="no")
