
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/13/Correlate_Genomic_Events.R")
> result <- main("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/13/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-tTRUE", "-iD=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/PRAD-TP/6190508/transformed.cor.cli.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/Append_Data/PRAD-TP/6154773/PRAD-TP.merged_data.txt", "-fF=", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=1", "-cQ=0.25", "-MF=ONLYSIG", "-oT=PRAD-TP", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "terrence_modification_tag"
[1] TRUE
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"         "-oT=PRAD-TP"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/Append_Data/PRAD-TP/6154773/PRAD-TP.merged_data.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/PRAD-TP/6190508/transformed.cor.cli.txt"

nPatients in clinical file=186, in cluster file=249, common to both=171
[1] "Reduce the number of clustering variables from 7 to 6."
[1]   6 171
[1] "CTNNB1 MUTATION ANALYSIS"
[1] 3
  CTNNB1 MUTATED CTNNB1 WILD-TYPE 
               4              167 
  CTNNB1 MUTATED CTNNB1 WILD-TYPE 
               4              167 
[1] "SPOP MUTATION ANALYSIS"
[1] 3
  SPOP MUTATED SPOP WILD-TYPE 
            12            159 
  SPOP MUTATED SPOP WILD-TYPE 
            12            159 
[1] "PTEN MUTATION ANALYSIS"
[1] 3
  PTEN MUTATED PTEN WILD-TYPE 
             9            162 
  PTEN MUTATED PTEN WILD-TYPE 
             9            162 
[1] "PCDHAC2 MUTATION ANALYSIS"
[1] 3
  PCDHAC2 MUTATED PCDHAC2 WILD-TYPE 
               19               152 
  PCDHAC2 MUTATED PCDHAC2 WILD-TYPE 
               19               152 
[1] "FOXA1 MUTATION ANALYSIS"
[1] 3
  FOXA1 MUTATED FOXA1 WILD-TYPE 
              6             165 
  FOXA1 MUTATED FOXA1 WILD-TYPE 
              6             165 
[1] "TP53 MUTATION ANALYSIS"
[1] 3
  TP53 MUTATED TP53 WILD-TYPE 
            15            156 
  TP53 MUTATED TP53 WILD-TYPE 
            15            156 
[1] "terrence_modification_tag"
[1] TRUE
[1] "data2feature, selection="
 [1] "YEARSTOBIRTH"                          
 [2] "VITALSTATUS"                           
 [3] "DAYSTODEATH"                           
 [4] "DAYSTOLASTFOLLOWUP"                    
 [5] "PRIMARYSITEOFDESEASE"                  
 [6] "NEOPLASM.DISEASESTAGE"                 
 [7] "PATHOLOGY.T.STAGE"                     
 [8] "PATHOLOGY.N.STAGE"                     
 [9] "PATHOLOGY.M.STAGE"                     
[10] "DCCUPLOADDATE"                         
[11] "GENDER"                                
[12] "DATEOFINITIALPATHOLOGICDIAGNOSIS"      
[13] "RADIATIONTHERAPY"                      
[14] "HISTOLOGICALTYPE"                      
[15] "RADIATIONS.RADIATION.REGIMENINDICATION"
[16] "COMPLETENESS.OF.RESECTION"             
[17] "NUMBER.OF.LYMPH.NODES"                 
[18] "GLEASON_SCORE_COMBINED"                
[19] "GLEASON_SCORE_PRIMARY"                 
[20] "GLEASON_SCORE_SECONDARY"               
[21] "HIGHEST_GLEASON_SCORE"                 
[22] "GLEASON_SCORE"                         
[23] "PSA_RESULT_PREOP"                      
[24] "DAYS_TO_PREOP_PSA"                     
[25] "PSA_VALUE"                             
[26] "DAYS_TO_PSA"                           
[27] "BATCHNUMBER"                           

Input Data has 27 rows and 171 columns.

[1] "Batch" "27"   
[1] "Last Follow UP"
TCGA-CH-5737 TCGA-CH-5738 TCGA-CH-5739 TCGA-CH-5740 TCGA-CH-5741 TCGA-CH-5744 
          91          212          671           31          395           60 
TCGA-CH-5745 TCGA-CH-5746 TCGA-CH-5748 TCGA-CH-5750 TCGA-CH-5751 TCGA-CH-5752 
          91          731           31          395         1065          942 
TCGA-CH-5753 TCGA-CH-5754 TCGA-CH-5761 TCGA-CH-5762 TCGA-CH-5763 TCGA-CH-5764 
          31           62           28         1339          365           31 
TCGA-CH-5765 TCGA-CH-5766 TCGA-CH-5767 TCGA-CH-5768 TCGA-CH-5771 TCGA-CH-5772 
         700           31          458          731          395          485 
TCGA-CH-5788 TCGA-CH-5789 TCGA-CH-5790 TCGA-CH-5791 TCGA-CH-5792 TCGA-CH-5794 
         820          303          974         1004           91          881 
TCGA-EJ-5494 TCGA-EJ-5495 TCGA-EJ-5496 TCGA-EJ-5497 TCGA-EJ-5498 TCGA-EJ-5499 
         825         1006          594          396          905          532 
TCGA-EJ-5501 TCGA-EJ-5502 TCGA-EJ-5503 TCGA-EJ-5504 TCGA-EJ-5505 TCGA-EJ-5506 
         936          244          716          880          921          827 
TCGA-EJ-5507 TCGA-EJ-5508 TCGA-EJ-5509 TCGA-EJ-5510 TCGA-EJ-5511 TCGA-EJ-5512 
         727         1184         1096         1115          974         1172 
TCGA-EJ-5514 TCGA-EJ-5515 TCGA-EJ-5516 TCGA-EJ-5517 TCGA-EJ-5518 TCGA-EJ-5519 
        1102         1240         1416         1454         1590         1335 
TCGA-EJ-5521 TCGA-EJ-5522 TCGA-EJ-5524 TCGA-EJ-5525 TCGA-EJ-5526 TCGA-EJ-5527 
        1578         1462         1310         1115         1179         1209 
TCGA-EJ-5530 TCGA-EJ-5532 TCGA-EJ-5542 TCGA-EJ-7115 TCGA-EJ-7123 TCGA-EJ-7125 
        1272         1461          884          821         1490         1860 
TCGA-EJ-7314 TCGA-EJ-7315 TCGA-EJ-7317 TCGA-EJ-7321 TCGA-EJ-7327 TCGA-EJ-7328 
         295          289          285          233          175          170 
TCGA-EJ-7330 TCGA-EJ-7331 TCGA-EJ-7781 TCGA-EJ-7783 TCGA-EJ-7784 TCGA-EJ-7785 
         191            9          169          131          167          258 
TCGA-EJ-7786 TCGA-EJ-7788 TCGA-EJ-7789 TCGA-EJ-7791 TCGA-EJ-7792 TCGA-EJ-7793 
         442           52          552          596          526           43 
TCGA-EJ-7794 TCGA-EJ-7797 TCGA-EJ-8474 TCGA-EJ-A46B TCGA-EJ-A46D TCGA-EJ-A46E 
         700          369          314          162          128          519 
TCGA-EJ-A46F TCGA-EJ-A46H TCGA-EJ-A46I TCGA-FC-7708 TCGA-FC-7961 TCGA-FC-A5OB 
         299          228          672           32           70          273 
TCGA-FC-A66V TCGA-FC-A6HD TCGA-G9-6329 TCGA-G9-6332 TCGA-G9-6333 TCGA-G9-6336 
         122           54         1266         2657         2465         2068 
TCGA-G9-6338 TCGA-G9-6342 TCGA-G9-6343 TCGA-G9-6348 TCGA-G9-6351 TCGA-G9-6353 
        2028         1696          554         1515         1403         1541 
TCGA-G9-6356 TCGA-G9-6361 TCGA-G9-6362 TCGA-G9-6363 TCGA-G9-6364 TCGA-G9-6365 
        1434         1415         1443         1378         1198         1363 
TCGA-G9-6366 TCGA-G9-6367 TCGA-G9-6369 TCGA-G9-6370 TCGA-G9-6371 TCGA-G9-6377 
         101         1222         1215         1156         1226          958 
TCGA-G9-6378 TCGA-G9-6384 TCGA-G9-6385 TCGA-G9-6494 TCGA-G9-6496 TCGA-G9-6499 
        1155          765          830         1771         1726         1543 
TCGA-G9-7510 TCGA-G9-7519 TCGA-G9-7521 TCGA-G9-7522 TCGA-G9-7523 TCGA-G9-7525 
        1185          849          486          648          856          512 
TCGA-H9-7775 TCGA-HC-7075 TCGA-HC-7077 TCGA-HC-7078 TCGA-HC-7079 TCGA-HC-7080 
         184           61           NA          162           89           61 
TCGA-HC-7209 TCGA-HC-7211 TCGA-HC-7212 TCGA-HC-7213 TCGA-HC-7230 TCGA-HC-7231 
          31           30          881           60           51           72 
TCGA-HC-7233 TCGA-HC-7736 TCGA-HC-7737 TCGA-HC-7740 TCGA-HC-7742 TCGA-HC-7744 
          52           30           63           53           45           51 
TCGA-HC-7747 TCGA-HC-7748 TCGA-HC-7749 TCGA-HC-7750 TCGA-HC-7752 TCGA-HC-7817 
          57          792           61           34           98           32 
TCGA-HC-7818 TCGA-HC-7821 TCGA-HC-8216 TCGA-HC-8265 TCGA-HC-A4ZV TCGA-HC-A6AL 
          45           56          682          486           23           67 
TCGA-HC-A6AS TCGA-HC-A6HX TCGA-HI-7168 TCGA-HI-7169 TCGA-HI-7170 TCGA-HI-7171 
          44           37         2391         1949         1899           NA 
TCGA-J4-8198 TCGA-J4-8200 TCGA-J4-A67N 
          98          374          502 
Variable 1:'AGE':	nDistinctValues=31,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=TRUE.
Variable 3:'DAYSTODEATH':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 4:'DAYSTOLASTFOLLOWUP':	nDistinctValues=145,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 5:'PRIMARY.SITE.OF.DISEASE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 6:'NEOPLASM.DISEASESTAGE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 7:'PATHOLOGY.T.STAGE':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'PATHOLOGY.N.STAGE':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'PATHOLOGY.M.STAGE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 10:'DCCUPLOADDAY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 11:'GENDER':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 12:'DAYOFINITIALPATHOLOGICDIAGNOSIS':	nDistinctValues=9,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 13:'RADIATION.THERAPY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 14:'HISTOLOGICAL.TYPE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 15:'RADIATIONS.RADIATION.REGIMENINDICATION':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 16:'COMPLETENESS.OF.RESECTION':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 17:'NUMBER.OF.LYMPH.NODES':	nDistinctValues=7,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 18:'GLEASON_SCORE_COMBINED':	nDistinctValues=5,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 19:'GLEASON_SCORE_PRIMARY':	nDistinctValues=4,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 20:'GLEASON_SCORE_SECONDARY':	nDistinctValues=3,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 21:'HIGHEST_GLEASON_SCORE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 22:'GLEASON_SCORE':	nDistinctValues=5,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 23:'PSA_RESULT_PREOP':	nDistinctValues=107,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 24:'DAYS_TO_PREOP_PSA':	nDistinctValues=83,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 25:'PSA_VALUE':	nDistinctValues=49,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 26:'DAYS_TO_PSA':	nDistinctValues=143,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 27:'BATCH.NUMBER':	nDistinctValues=17,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
 [1] "AGE"                       "PATHOLOGY.T.STAGE"        
 [3] "PATHOLOGY.N.STAGE"         "COMPLETENESS.OF.RESECTION"
 [5] "NUMBER.OF.LYMPH.NODES"     "GLEASON_SCORE_COMBINED"   
 [7] "GLEASON_SCORE_PRIMARY"     "GLEASON_SCORE_SECONDARY"  
 [9] "GLEASON_SCORE"             "PSA_RESULT_PREOP"         
[11] "DAYS_TO_PREOP_PSA"         "PSA_VALUE"                
[13] "DAYS_TO_PSA"              
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T" "2"          
[1] "PATHOLOGY.N" "3"          
Output Data has 171 columns, 1 survival variables, and 13 non-survival variables.
AGE, nv=31, binary=FALSE, numeric=TRUE
PATHOLOGY.T.STAGE, nv=3, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.T',vnm)"
vv
T2 T3 T4 
73 91  5 
[1] "table(vv)"
vv
T2 T3 T4 
73 91  5 
$ClinVariableName
[1] "PATHOLOGY.T.STAGE"

$Table
vv
T2 T3 T4 
73 91  5 

$nClasses
[1] 3

$ClinVariableType
[1] "multiclass(3)"


T2 T3 T4 
73 91  5 
PATHOLOGY.N.STAGE, nv=2, binary=FALSE, numeric=TRUE
COMPLETENESS.OF.RESECTION, nv=3, binary=FALSE, numeric=FALSE
NUMBER.OF.LYMPH.NODES, nv=7, binary=FALSE, numeric=TRUE
GLEASON_SCORE_COMBINED, nv=5, binary=FALSE, numeric=TRUE
GLEASON_SCORE_PRIMARY, nv=4, binary=FALSE, numeric=TRUE
GLEASON_SCORE_SECONDARY, nv=3, binary=FALSE, numeric=TRUE
GLEASON_SCORE, nv=5, binary=FALSE, numeric=TRUE
PSA_RESULT_PREOP, nv=107, binary=FALSE, numeric=TRUE
DAYS_TO_PREOP_PSA, nv=83, binary=FALSE, numeric=TRUE
PSA_VALUE, nv=49, binary=FALSE, numeric=TRUE
DAYS_TO_PSA, nv=143, binary=FALSE, numeric=TRUE

Clustering(1) Variable = CTNNB1 MUTATION ANALYSIS
D1V1, survival
                  sevent
clus2                0   1
  CTNNB1 MUTATED     4   0
  CTNNB1 WILD-TYPE 166   1
  CTNNB1 MUTATED CTNNB1 WILD-TYPE 
               4              167 
  CTNNB1 MUTATED CTNNB1 WILD-TYPE 
               0                1 
$`CTNNB1 MUTATED`
TCGA-CH-5752 TCGA-EJ-5494 TCGA-EJ-5525 TCGA-HC-7212 
       30.97        27.12        36.66        28.96 

$`CTNNB1 WILD-TYPE`
TCGA-CH-5737 TCGA-CH-5738 TCGA-CH-5739 TCGA-CH-5740 TCGA-CH-5741 TCGA-CH-5744 
        2.99         6.97        22.06         1.02        12.99         1.97 
TCGA-CH-5745 TCGA-CH-5746 TCGA-CH-5748 TCGA-CH-5750 TCGA-CH-5751 TCGA-CH-5753 
        2.99        24.03         1.02        12.99        35.01         1.02 
TCGA-CH-5754 TCGA-CH-5761 TCGA-CH-5762 TCGA-CH-5763 TCGA-CH-5764 TCGA-CH-5765 
        2.04         0.92        44.02        12.00         1.02        23.01 
TCGA-CH-5766 TCGA-CH-5767 TCGA-CH-5768 TCGA-CH-5771 TCGA-CH-5772 TCGA-CH-5788 
        1.02        15.06        24.03        12.99        15.95        26.96 
TCGA-CH-5789 TCGA-CH-5790 TCGA-CH-5791 TCGA-CH-5792 TCGA-CH-5794 TCGA-EJ-5495 
        9.96        32.02        33.01         2.99        28.96        33.07 
TCGA-EJ-5496 TCGA-EJ-5497 TCGA-EJ-5498 TCGA-EJ-5499 TCGA-EJ-5501 TCGA-EJ-5502 
       19.53        13.02        29.75        17.49        30.77         8.02 
TCGA-EJ-5503 TCGA-EJ-5504 TCGA-EJ-5505 TCGA-EJ-5506 TCGA-EJ-5507 TCGA-EJ-5508 
       23.54        28.93        30.28        27.19        23.90        38.93 
TCGA-EJ-5509 TCGA-EJ-5510 TCGA-EJ-5511 TCGA-EJ-5512 TCGA-EJ-5514 TCGA-EJ-5515 
       36.03        36.66        32.02        38.53        36.23        40.77 
TCGA-EJ-5516 TCGA-EJ-5517 TCGA-EJ-5518 TCGA-EJ-5519 TCGA-EJ-5521 TCGA-EJ-5522 
       46.55        47.80        52.27        43.89        51.88        48.07 
TCGA-EJ-5524 TCGA-EJ-5526 TCGA-EJ-5527 TCGA-EJ-5530 TCGA-EJ-5532 TCGA-EJ-5542 
       43.07        38.76        39.75        41.82        48.03        29.06 
TCGA-EJ-7115 TCGA-EJ-7123 TCGA-EJ-7125 TCGA-EJ-7314 TCGA-EJ-7315 TCGA-EJ-7317 
       26.99        48.99        61.15         9.70         9.50         9.37 
TCGA-EJ-7321 TCGA-EJ-7327 TCGA-EJ-7328 TCGA-EJ-7330 TCGA-EJ-7331 TCGA-EJ-7781 
        7.66         5.75         5.59         6.28         0.30         5.56 
TCGA-EJ-7783 TCGA-EJ-7784 TCGA-EJ-7785 TCGA-EJ-7786 TCGA-EJ-7788 TCGA-EJ-7789 
        4.31         5.49         8.48        14.53         1.71        18.15 
TCGA-EJ-7791 TCGA-EJ-7792 TCGA-EJ-7793 TCGA-EJ-7794 TCGA-EJ-7797 TCGA-EJ-8474 
       19.59        17.29         1.41        23.01        12.13        10.32 
TCGA-EJ-A46B TCGA-EJ-A46D TCGA-EJ-A46E TCGA-EJ-A46F TCGA-EJ-A46H TCGA-EJ-A46I 
        5.33         4.21        17.06         9.83         7.50        22.09 
TCGA-FC-7708 TCGA-FC-7961 TCGA-FC-A5OB TCGA-FC-A66V TCGA-FC-A6HD TCGA-G9-6329 
        1.05         2.30         8.98         4.01         1.78        41.62 
TCGA-G9-6332 TCGA-G9-6333 TCGA-G9-6336 TCGA-G9-6338 TCGA-G9-6342 TCGA-G9-6343 
       65.92        65.95        65.98        65.98        55.76        18.21 
TCGA-G9-6348 TCGA-G9-6351 TCGA-G9-6353 TCGA-G9-6356 TCGA-G9-6361 TCGA-G9-6362 
       49.81        46.13        50.66        47.15        46.52        47.44 
TCGA-G9-6363 TCGA-G9-6364 TCGA-G9-6365 TCGA-G9-6366 TCGA-G9-6367 TCGA-G9-6369 
       45.30        39.39        44.81         3.32        40.18        39.95 
TCGA-G9-6370 TCGA-G9-6371 TCGA-G9-6377 TCGA-G9-6378 TCGA-G9-6384 TCGA-G9-6385 
       38.01        40.31        31.50        37.97        25.15        27.29 
TCGA-G9-6494 TCGA-G9-6496 TCGA-G9-6499 TCGA-G9-7510 TCGA-G9-7519 TCGA-G9-7521 
       58.22        56.75        50.73        38.96        27.91        15.98 
TCGA-G9-7522 TCGA-G9-7523 TCGA-G9-7525 TCGA-H9-7775 TCGA-HC-7075 TCGA-HC-7077 
       21.30        28.14        16.83         6.05         2.01        65.98 
TCGA-HC-7078 TCGA-HC-7079 TCGA-HC-7080 TCGA-HC-7209 TCGA-HC-7211 TCGA-HC-7213 
        5.33         2.93         2.01         1.02         0.99         1.97 
TCGA-HC-7230 TCGA-HC-7231 TCGA-HC-7233 TCGA-HC-7736 TCGA-HC-7737 TCGA-HC-7740 
        1.68         2.37         1.71         0.99         2.07         1.74 
TCGA-HC-7742 TCGA-HC-7744 TCGA-HC-7747 TCGA-HC-7748 TCGA-HC-7749 TCGA-HC-7750 
        1.48         1.68         1.87        26.04         2.01         1.12 
TCGA-HC-7752 TCGA-HC-7817 TCGA-HC-7818 TCGA-HC-7821 TCGA-HC-8216 TCGA-HC-8265 
        3.22         1.05         1.48         1.84        22.42        15.98 
TCGA-HC-A4ZV TCGA-HC-A6AL TCGA-HC-A6AS TCGA-HC-A6HX TCGA-HI-7168 TCGA-HI-7169 
        0.76         2.20         1.45         1.22        65.92        64.08 
TCGA-HI-7170 TCGA-HI-7171 TCGA-J4-8198 TCGA-J4-8200 TCGA-J4-A67N 
       62.43        66.02         3.22        12.30        16.50 

  CTNNB1 MUTATED CTNNB1 WILD-TYPE 
           27.12             0.30 
  CTNNB1 MUTATED CTNNB1 WILD-TYPE 
           36.66            66.02 
  CTNNB1 MUTATED CTNNB1 WILD-TYPE 
          29.965           17.490 
[1] "27.1 - 36.7 (30.0)" "0.3 - 66.0 (17.5)" 
      TCGA-CH-5737       TCGA-CH-5738       TCGA-CH-5739       TCGA-CH-5740 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-CH-5741       TCGA-CH-5744       TCGA-CH-5745       TCGA-CH-5746 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-CH-5748       TCGA-CH-5750       TCGA-CH-5751       TCGA-CH-5752 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE"   "CTNNB1 MUTATED" 
      TCGA-CH-5753       TCGA-CH-5754       TCGA-CH-5761       TCGA-CH-5762 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-CH-5763       TCGA-CH-5764       TCGA-CH-5765       TCGA-CH-5766 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-CH-5767       TCGA-CH-5768       TCGA-CH-5771       TCGA-CH-5772 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-CH-5788       TCGA-CH-5789       TCGA-CH-5790       TCGA-CH-5791 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-CH-5792       TCGA-CH-5794       TCGA-EJ-5494       TCGA-EJ-5495 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE"   "CTNNB1 MUTATED" "CTNNB1 WILD-TYPE" 
      TCGA-EJ-5496       TCGA-EJ-5497       TCGA-EJ-5498       TCGA-EJ-5499 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-EJ-5501       TCGA-EJ-5502       TCGA-EJ-5503       TCGA-EJ-5504 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-EJ-5505       TCGA-EJ-5506       TCGA-EJ-5507       TCGA-EJ-5508 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-EJ-5509       TCGA-EJ-5510       TCGA-EJ-5511       TCGA-EJ-5512 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-EJ-5514       TCGA-EJ-5515       TCGA-EJ-5516       TCGA-EJ-5517 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-EJ-5518       TCGA-EJ-5519       TCGA-EJ-5521       TCGA-EJ-5522 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-EJ-5524       TCGA-EJ-5525       TCGA-EJ-5526       TCGA-EJ-5527 
"CTNNB1 WILD-TYPE"   "CTNNB1 MUTATED" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-EJ-5530       TCGA-EJ-5532       TCGA-EJ-5542       TCGA-EJ-7115 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-EJ-7123       TCGA-EJ-7125       TCGA-EJ-7314       TCGA-EJ-7315 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-EJ-7317       TCGA-EJ-7321       TCGA-EJ-7327       TCGA-EJ-7328 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-EJ-7330       TCGA-EJ-7331       TCGA-EJ-7781       TCGA-EJ-7783 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-EJ-7784       TCGA-EJ-7785       TCGA-EJ-7786       TCGA-EJ-7788 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-EJ-7789       TCGA-EJ-7791       TCGA-EJ-7792       TCGA-EJ-7793 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-EJ-7794       TCGA-EJ-7797       TCGA-EJ-8474       TCGA-EJ-A46B 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-EJ-A46D       TCGA-EJ-A46E       TCGA-EJ-A46F       TCGA-EJ-A46H 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-EJ-A46I       TCGA-FC-7708       TCGA-FC-7961       TCGA-FC-A5OB 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-FC-A66V       TCGA-FC-A6HD       TCGA-G9-6329       TCGA-G9-6332 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-G9-6333       TCGA-G9-6336       TCGA-G9-6338       TCGA-G9-6342 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-G9-6343       TCGA-G9-6348       TCGA-G9-6351       TCGA-G9-6353 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-G9-6356       TCGA-G9-6361       TCGA-G9-6362       TCGA-G9-6363 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-G9-6364       TCGA-G9-6365       TCGA-G9-6366       TCGA-G9-6367 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-G9-6369       TCGA-G9-6370       TCGA-G9-6371       TCGA-G9-6377 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-G9-6378       TCGA-G9-6384       TCGA-G9-6385       TCGA-G9-6494 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-G9-6496       TCGA-G9-6499       TCGA-G9-7510       TCGA-G9-7519 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-G9-7521       TCGA-G9-7522       TCGA-G9-7523       TCGA-G9-7525 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-H9-7775       TCGA-HC-7075       TCGA-HC-7077       TCGA-HC-7078 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-HC-7079       TCGA-HC-7080       TCGA-HC-7209       TCGA-HC-7211 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-HC-7212       TCGA-HC-7213       TCGA-HC-7230       TCGA-HC-7231 
  "CTNNB1 MUTATED" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-HC-7233       TCGA-HC-7736       TCGA-HC-7737       TCGA-HC-7740 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-HC-7742       TCGA-HC-7744       TCGA-HC-7747       TCGA-HC-7748 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-HC-7749       TCGA-HC-7750       TCGA-HC-7752       TCGA-HC-7817 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-HC-7818       TCGA-HC-7821       TCGA-HC-8216       TCGA-HC-8265 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-HC-A4ZV       TCGA-HC-A6AL       TCGA-HC-A6AS       TCGA-HC-A6HX 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-HI-7168       TCGA-HI-7169       TCGA-HI-7170       TCGA-HI-7171 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-J4-8198       TCGA-J4-8200       TCGA-J4-A67N 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-CH-5737       TCGA-CH-5738       TCGA-CH-5739       TCGA-CH-5740 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-CH-5741       TCGA-CH-5744       TCGA-CH-5745       TCGA-CH-5746 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-CH-5748       TCGA-CH-5750       TCGA-CH-5751       TCGA-CH-5752 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE"   "CTNNB1 MUTATED" 
      TCGA-CH-5753       TCGA-CH-5754       TCGA-CH-5761       TCGA-CH-5762 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-CH-5763       TCGA-CH-5764       TCGA-CH-5765       TCGA-CH-5766 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-CH-5767       TCGA-CH-5768       TCGA-CH-5771       TCGA-CH-5772 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-CH-5788       TCGA-CH-5789       TCGA-CH-5790       TCGA-CH-5791 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-CH-5792       TCGA-CH-5794       TCGA-EJ-5494       TCGA-EJ-5495 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE"   "CTNNB1 MUTATED" "CTNNB1 WILD-TYPE" 
      TCGA-EJ-5496       TCGA-EJ-5497       TCGA-EJ-5498       TCGA-EJ-5499 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-EJ-5501       TCGA-EJ-5502       TCGA-EJ-5503       TCGA-EJ-5504 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-EJ-5505       TCGA-EJ-5506       TCGA-EJ-5507       TCGA-EJ-5508 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-EJ-5509       TCGA-EJ-5510       TCGA-EJ-5511       TCGA-EJ-5512 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-EJ-5514       TCGA-EJ-5515       TCGA-EJ-5516       TCGA-EJ-5517 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-EJ-5518       TCGA-EJ-5519       TCGA-EJ-5521       TCGA-EJ-5522 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-EJ-5524       TCGA-EJ-5525       TCGA-EJ-5526       TCGA-EJ-5527 
"CTNNB1 WILD-TYPE"   "CTNNB1 MUTATED" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-EJ-5530       TCGA-EJ-5532       TCGA-EJ-5542       TCGA-EJ-7115 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-EJ-7123       TCGA-EJ-7125       TCGA-EJ-7314       TCGA-EJ-7315 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-EJ-7317       TCGA-EJ-7321       TCGA-EJ-7327       TCGA-EJ-7328 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-EJ-7330       TCGA-EJ-7331       TCGA-EJ-7781       TCGA-EJ-7783 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-EJ-7784       TCGA-EJ-7785       TCGA-EJ-7786       TCGA-EJ-7788 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-EJ-7789       TCGA-EJ-7791       TCGA-EJ-7792       TCGA-EJ-7793 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-EJ-7794       TCGA-EJ-7797       TCGA-EJ-8474       TCGA-EJ-A46B 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-EJ-A46D       TCGA-EJ-A46E       TCGA-EJ-A46F       TCGA-EJ-A46H 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-EJ-A46I       TCGA-FC-7708       TCGA-FC-7961       TCGA-FC-A5OB 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-FC-A66V       TCGA-FC-A6HD       TCGA-G9-6329       TCGA-G9-6332 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-G9-6333       TCGA-G9-6336       TCGA-G9-6338       TCGA-G9-6342 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-G9-6343       TCGA-G9-6348       TCGA-G9-6351       TCGA-G9-6353 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-G9-6356       TCGA-G9-6361       TCGA-G9-6362       TCGA-G9-6363 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-G9-6364       TCGA-G9-6365       TCGA-G9-6366       TCGA-G9-6367 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-G9-6369       TCGA-G9-6370       TCGA-G9-6371       TCGA-G9-6377 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-G9-6378       TCGA-G9-6384       TCGA-G9-6385       TCGA-G9-6494 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-G9-6496       TCGA-G9-6499       TCGA-G9-7510       TCGA-G9-7519 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-G9-7521       TCGA-G9-7522       TCGA-G9-7523       TCGA-G9-7525 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-H9-7775       TCGA-HC-7075       TCGA-HC-7077       TCGA-HC-7078 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-HC-7079       TCGA-HC-7080       TCGA-HC-7209       TCGA-HC-7211 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-HC-7212       TCGA-HC-7213       TCGA-HC-7230       TCGA-HC-7231 
  "CTNNB1 MUTATED" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-HC-7233       TCGA-HC-7736       TCGA-HC-7737       TCGA-HC-7740 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-HC-7742       TCGA-HC-7744       TCGA-HC-7747       TCGA-HC-7748 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-HC-7749       TCGA-HC-7750       TCGA-HC-7752       TCGA-HC-7817 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-HC-7818       TCGA-HC-7821       TCGA-HC-8216       TCGA-HC-8265 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-HC-A4ZV       TCGA-HC-A6AL       TCGA-HC-A6AS       TCGA-HC-A6HX 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-HI-7168       TCGA-HI-7169       TCGA-HI-7170       TCGA-HI-7171 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-J4-8198       TCGA-J4-8200       TCGA-J4-A67N 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-CH-5737       TCGA-CH-5738       TCGA-CH-5739       TCGA-CH-5740 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-CH-5741       TCGA-CH-5744       TCGA-CH-5745       TCGA-CH-5746 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-CH-5748       TCGA-CH-5750       TCGA-CH-5751       TCGA-CH-5752 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE"   "CTNNB1 MUTATED" 
      TCGA-CH-5753       TCGA-CH-5754       TCGA-CH-5761       TCGA-CH-5762 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-CH-5763       TCGA-CH-5764       TCGA-CH-5765       TCGA-CH-5766 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-CH-5767       TCGA-CH-5768       TCGA-CH-5771       TCGA-CH-5772 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-CH-5788       TCGA-CH-5789       TCGA-CH-5790       TCGA-CH-5791 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-CH-5792       TCGA-CH-5794       TCGA-EJ-5494       TCGA-EJ-5495 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE"   "CTNNB1 MUTATED" "CTNNB1 WILD-TYPE" 
      TCGA-EJ-5496       TCGA-EJ-5497       TCGA-EJ-5498       TCGA-EJ-5499 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-EJ-5501       TCGA-EJ-5502       TCGA-EJ-5503       TCGA-EJ-5504 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-EJ-5505       TCGA-EJ-5506       TCGA-EJ-5507       TCGA-EJ-5508 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-EJ-5509       TCGA-EJ-5510       TCGA-EJ-5511       TCGA-EJ-5512 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-EJ-5514       TCGA-EJ-5515       TCGA-EJ-5516       TCGA-EJ-5517 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-EJ-5518       TCGA-EJ-5519       TCGA-EJ-5521       TCGA-EJ-5522 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-EJ-5524       TCGA-EJ-5525       TCGA-EJ-5526       TCGA-EJ-5527 
"CTNNB1 WILD-TYPE"   "CTNNB1 MUTATED" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-EJ-5530       TCGA-EJ-5532       TCGA-EJ-5542       TCGA-EJ-7115 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-EJ-7123       TCGA-EJ-7125       TCGA-EJ-7314       TCGA-EJ-7315 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-EJ-7317       TCGA-EJ-7321       TCGA-EJ-7327       TCGA-EJ-7328 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-EJ-7330       TCGA-EJ-7331       TCGA-EJ-7781       TCGA-EJ-7783 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-EJ-7784       TCGA-EJ-7785       TCGA-EJ-7786       TCGA-EJ-7788 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-EJ-7789       TCGA-EJ-7791       TCGA-EJ-7792       TCGA-EJ-7793 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-EJ-7794       TCGA-EJ-7797       TCGA-EJ-8474       TCGA-EJ-A46B 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-EJ-A46D       TCGA-EJ-A46E       TCGA-EJ-A46F       TCGA-EJ-A46H 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-EJ-A46I       TCGA-FC-7708       TCGA-FC-7961       TCGA-FC-A5OB 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-FC-A66V       TCGA-FC-A6HD       TCGA-G9-6329       TCGA-G9-6332 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-G9-6333       TCGA-G9-6336       TCGA-G9-6338       TCGA-G9-6342 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-G9-6343       TCGA-G9-6348       TCGA-G9-6351       TCGA-G9-6353 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-G9-6356       TCGA-G9-6361       TCGA-G9-6362       TCGA-G9-6363 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-G9-6364       TCGA-G9-6365       TCGA-G9-6366       TCGA-G9-6367 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-G9-6369       TCGA-G9-6370       TCGA-G9-6371       TCGA-G9-6377 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-G9-6378       TCGA-G9-6384       TCGA-G9-6385       TCGA-G9-6494 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-G9-6496       TCGA-G9-6499       TCGA-G9-7510       TCGA-G9-7519 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-G9-7521       TCGA-G9-7522       TCGA-G9-7523       TCGA-G9-7525 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-H9-7775       TCGA-HC-7075       TCGA-HC-7077       TCGA-HC-7078 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-HC-7079       TCGA-HC-7080       TCGA-HC-7209       TCGA-HC-7211 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-HC-7212       TCGA-HC-7213       TCGA-HC-7230       TCGA-HC-7231 
  "CTNNB1 MUTATED" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-HC-7233       TCGA-HC-7736       TCGA-HC-7737       TCGA-HC-7740 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-HC-7742       TCGA-HC-7744       TCGA-HC-7747       TCGA-HC-7748 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-HC-7749       TCGA-HC-7750       TCGA-HC-7752       TCGA-HC-7817 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-HC-7818       TCGA-HC-7821       TCGA-HC-8216       TCGA-HC-8265 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-HC-A4ZV       TCGA-HC-A6AL       TCGA-HC-A6AS       TCGA-HC-A6HX 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-HI-7168       TCGA-HI-7169       TCGA-HI-7170       TCGA-HI-7171 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-J4-8198       TCGA-J4-8200       TCGA-J4-A67N 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
[1] "hr=" "1"  
D1V2, continuous
                  vv
clus               T2 T3 T4
  CTNNB1 MUTATED    2  2  0
  CTNNB1 WILD-TYPE 71 89  5
D1V3, multiclass
    clus
vv   CTNNB1 MUTATED CTNNB1 WILD-TYPE
  T2              2               71
  T3              2               89
  T4              0                5
D1V4, binary
                  cls
clus                 0   1
  CTNNB1 MUTATED     4   0
  CTNNB1 WILD-TYPE 132  16
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CTNNB1 MUTATED      4    0
  CTNNB1 WILD-TYPE  132   16
   clus
vv  CTNNB1 MUTATED CTNNB1 WILD-TYPE
  0              4              132
  1              0               16
                  vv
clus                R0  R1  RX
  CTNNB1 MUTATED     3   0   0
  CTNNB1 WILD-TYPE 124  33   2
D1V5, multiclass
    clus
vv   CTNNB1 MUTATED CTNNB1 WILD-TYPE
  R0              3              124
  R1              0               33
  RX              0                2
D1V6, continuous
D1V7, continuous
D1V8, continuous
D1V9, continuous
D1V10, continuous
D1V11, continuous
D1V12, continuous
D1V13, continuous
D1V14, continuous

Clustering(2) Variable = SPOP MUTATION ANALYSIS
D2V1, survival
                sevent
clus2              0   1
  SPOP MUTATED    12   0
  SPOP WILD-TYPE 158   1
  SPOP MUTATED SPOP WILD-TYPE 
            12            159 
  SPOP MUTATED SPOP WILD-TYPE 
             0              1 
$`SPOP MUTATED`
TCGA-CH-5788 TCGA-EJ-5505 TCGA-EJ-5509 TCGA-EJ-7115 TCGA-EJ-7123 TCGA-EJ-7330 
       26.96        30.28        36.03        26.99        48.99         6.28 
TCGA-FC-7961 TCGA-G9-6333 TCGA-G9-6338 TCGA-G9-6369 TCGA-G9-7510 TCGA-HC-7080 
        2.30        65.95        65.98        39.95        38.96         2.01 

$`SPOP WILD-TYPE`
TCGA-CH-5737 TCGA-CH-5738 TCGA-CH-5739 TCGA-CH-5740 TCGA-CH-5741 TCGA-CH-5744 
        2.99         6.97        22.06         1.02        12.99         1.97 
TCGA-CH-5745 TCGA-CH-5746 TCGA-CH-5748 TCGA-CH-5750 TCGA-CH-5751 TCGA-CH-5752 
        2.99        24.03         1.02        12.99        35.01        30.97 
TCGA-CH-5753 TCGA-CH-5754 TCGA-CH-5761 TCGA-CH-5762 TCGA-CH-5763 TCGA-CH-5764 
        1.02         2.04         0.92        44.02        12.00         1.02 
TCGA-CH-5765 TCGA-CH-5766 TCGA-CH-5767 TCGA-CH-5768 TCGA-CH-5771 TCGA-CH-5772 
       23.01         1.02        15.06        24.03        12.99        15.95 
TCGA-CH-5789 TCGA-CH-5790 TCGA-CH-5791 TCGA-CH-5792 TCGA-CH-5794 TCGA-EJ-5494 
        9.96        32.02        33.01         2.99        28.96        27.12 
TCGA-EJ-5495 TCGA-EJ-5496 TCGA-EJ-5497 TCGA-EJ-5498 TCGA-EJ-5499 TCGA-EJ-5501 
       33.07        19.53        13.02        29.75        17.49        30.77 
TCGA-EJ-5502 TCGA-EJ-5503 TCGA-EJ-5504 TCGA-EJ-5506 TCGA-EJ-5507 TCGA-EJ-5508 
        8.02        23.54        28.93        27.19        23.90        38.93 
TCGA-EJ-5510 TCGA-EJ-5511 TCGA-EJ-5512 TCGA-EJ-5514 TCGA-EJ-5515 TCGA-EJ-5516 
       36.66        32.02        38.53        36.23        40.77        46.55 
TCGA-EJ-5517 TCGA-EJ-5518 TCGA-EJ-5519 TCGA-EJ-5521 TCGA-EJ-5522 TCGA-EJ-5524 
       47.80        52.27        43.89        51.88        48.07        43.07 
TCGA-EJ-5525 TCGA-EJ-5526 TCGA-EJ-5527 TCGA-EJ-5530 TCGA-EJ-5532 TCGA-EJ-5542 
       36.66        38.76        39.75        41.82        48.03        29.06 
TCGA-EJ-7125 TCGA-EJ-7314 TCGA-EJ-7315 TCGA-EJ-7317 TCGA-EJ-7321 TCGA-EJ-7327 
       61.15         9.70         9.50         9.37         7.66         5.75 
TCGA-EJ-7328 TCGA-EJ-7331 TCGA-EJ-7781 TCGA-EJ-7783 TCGA-EJ-7784 TCGA-EJ-7785 
        5.59         0.30         5.56         4.31         5.49         8.48 
TCGA-EJ-7786 TCGA-EJ-7788 TCGA-EJ-7789 TCGA-EJ-7791 TCGA-EJ-7792 TCGA-EJ-7793 
       14.53         1.71        18.15        19.59        17.29         1.41 
TCGA-EJ-7794 TCGA-EJ-7797 TCGA-EJ-8474 TCGA-EJ-A46B TCGA-EJ-A46D TCGA-EJ-A46E 
       23.01        12.13        10.32         5.33         4.21        17.06 
TCGA-EJ-A46F TCGA-EJ-A46H TCGA-EJ-A46I TCGA-FC-7708 TCGA-FC-A5OB TCGA-FC-A66V 
        9.83         7.50        22.09         1.05         8.98         4.01 
TCGA-FC-A6HD TCGA-G9-6329 TCGA-G9-6332 TCGA-G9-6336 TCGA-G9-6342 TCGA-G9-6343 
        1.78        41.62        65.92        65.98        55.76        18.21 
TCGA-G9-6348 TCGA-G9-6351 TCGA-G9-6353 TCGA-G9-6356 TCGA-G9-6361 TCGA-G9-6362 
       49.81        46.13        50.66        47.15        46.52        47.44 
TCGA-G9-6363 TCGA-G9-6364 TCGA-G9-6365 TCGA-G9-6366 TCGA-G9-6367 TCGA-G9-6370 
       45.30        39.39        44.81         3.32        40.18        38.01 
TCGA-G9-6371 TCGA-G9-6377 TCGA-G9-6378 TCGA-G9-6384 TCGA-G9-6385 TCGA-G9-6494 
       40.31        31.50        37.97        25.15        27.29        58.22 
TCGA-G9-6496 TCGA-G9-6499 TCGA-G9-7519 TCGA-G9-7521 TCGA-G9-7522 TCGA-G9-7523 
       56.75        50.73        27.91        15.98        21.30        28.14 
TCGA-G9-7525 TCGA-H9-7775 TCGA-HC-7075 TCGA-HC-7077 TCGA-HC-7078 TCGA-HC-7079 
       16.83         6.05         2.01        65.98         5.33         2.93 
TCGA-HC-7209 TCGA-HC-7211 TCGA-HC-7212 TCGA-HC-7213 TCGA-HC-7230 TCGA-HC-7231 
        1.02         0.99        28.96         1.97         1.68         2.37 
TCGA-HC-7233 TCGA-HC-7736 TCGA-HC-7737 TCGA-HC-7740 TCGA-HC-7742 TCGA-HC-7744 
        1.71         0.99         2.07         1.74         1.48         1.68 
TCGA-HC-7747 TCGA-HC-7748 TCGA-HC-7749 TCGA-HC-7750 TCGA-HC-7752 TCGA-HC-7817 
        1.87        26.04         2.01         1.12         3.22         1.05 
TCGA-HC-7818 TCGA-HC-7821 TCGA-HC-8216 TCGA-HC-8265 TCGA-HC-A4ZV TCGA-HC-A6AL 
        1.48         1.84        22.42        15.98         0.76         2.20 
TCGA-HC-A6AS TCGA-HC-A6HX TCGA-HI-7168 TCGA-HI-7169 TCGA-HI-7170 TCGA-HI-7171 
        1.45         1.22        65.92        64.08        62.43        66.02 
TCGA-J4-8198 TCGA-J4-8200 TCGA-J4-A67N 
        3.22        12.30        16.50 

  SPOP MUTATED SPOP WILD-TYPE 
          2.01           0.30 
  SPOP MUTATED SPOP WILD-TYPE 
         65.98          66.02 
  SPOP MUTATED SPOP WILD-TYPE 
        33.155         17.290 
[1] "2.0 - 66.0 (33.2)" "0.3 - 66.0 (17.3)"
    TCGA-CH-5737     TCGA-CH-5738     TCGA-CH-5739     TCGA-CH-5740 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-CH-5741     TCGA-CH-5744     TCGA-CH-5745     TCGA-CH-5746 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-CH-5748     TCGA-CH-5750     TCGA-CH-5751     TCGA-CH-5752 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-CH-5753     TCGA-CH-5754     TCGA-CH-5761     TCGA-CH-5762 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-CH-5763     TCGA-CH-5764     TCGA-CH-5765     TCGA-CH-5766 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-CH-5767     TCGA-CH-5768     TCGA-CH-5771     TCGA-CH-5772 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-CH-5788     TCGA-CH-5789     TCGA-CH-5790     TCGA-CH-5791 
  "SPOP MUTATED" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-CH-5792     TCGA-CH-5794     TCGA-EJ-5494     TCGA-EJ-5495 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-EJ-5496     TCGA-EJ-5497     TCGA-EJ-5498     TCGA-EJ-5499 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-EJ-5501     TCGA-EJ-5502     TCGA-EJ-5503     TCGA-EJ-5504 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-EJ-5505     TCGA-EJ-5506     TCGA-EJ-5507     TCGA-EJ-5508 
  "SPOP MUTATED" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-EJ-5509     TCGA-EJ-5510     TCGA-EJ-5511     TCGA-EJ-5512 
  "SPOP MUTATED" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-EJ-5514     TCGA-EJ-5515     TCGA-EJ-5516     TCGA-EJ-5517 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-EJ-5518     TCGA-EJ-5519     TCGA-EJ-5521     TCGA-EJ-5522 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-EJ-5524     TCGA-EJ-5525     TCGA-EJ-5526     TCGA-EJ-5527 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-EJ-5530     TCGA-EJ-5532     TCGA-EJ-5542     TCGA-EJ-7115 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE"   "SPOP MUTATED" 
    TCGA-EJ-7123     TCGA-EJ-7125     TCGA-EJ-7314     TCGA-EJ-7315 
  "SPOP MUTATED" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-EJ-7317     TCGA-EJ-7321     TCGA-EJ-7327     TCGA-EJ-7328 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-EJ-7330     TCGA-EJ-7331     TCGA-EJ-7781     TCGA-EJ-7783 
  "SPOP MUTATED" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-EJ-7784     TCGA-EJ-7785     TCGA-EJ-7786     TCGA-EJ-7788 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-EJ-7789     TCGA-EJ-7791     TCGA-EJ-7792     TCGA-EJ-7793 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-EJ-7794     TCGA-EJ-7797     TCGA-EJ-8474     TCGA-EJ-A46B 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-EJ-A46D     TCGA-EJ-A46E     TCGA-EJ-A46F     TCGA-EJ-A46H 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-EJ-A46I     TCGA-FC-7708     TCGA-FC-7961     TCGA-FC-A5OB 
"SPOP WILD-TYPE" "SPOP WILD-TYPE"   "SPOP MUTATED" "SPOP WILD-TYPE" 
    TCGA-FC-A66V     TCGA-FC-A6HD     TCGA-G9-6329     TCGA-G9-6332 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-G9-6333     TCGA-G9-6336     TCGA-G9-6338     TCGA-G9-6342 
  "SPOP MUTATED" "SPOP WILD-TYPE"   "SPOP MUTATED" "SPOP WILD-TYPE" 
    TCGA-G9-6343     TCGA-G9-6348     TCGA-G9-6351     TCGA-G9-6353 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-G9-6356     TCGA-G9-6361     TCGA-G9-6362     TCGA-G9-6363 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-G9-6364     TCGA-G9-6365     TCGA-G9-6366     TCGA-G9-6367 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-G9-6369     TCGA-G9-6370     TCGA-G9-6371     TCGA-G9-6377 
  "SPOP MUTATED" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-G9-6378     TCGA-G9-6384     TCGA-G9-6385     TCGA-G9-6494 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-G9-6496     TCGA-G9-6499     TCGA-G9-7510     TCGA-G9-7519 
"SPOP WILD-TYPE" "SPOP WILD-TYPE"   "SPOP MUTATED" "SPOP WILD-TYPE" 
    TCGA-G9-7521     TCGA-G9-7522     TCGA-G9-7523     TCGA-G9-7525 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-H9-7775     TCGA-HC-7075     TCGA-HC-7077     TCGA-HC-7078 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-HC-7079     TCGA-HC-7080     TCGA-HC-7209     TCGA-HC-7211 
"SPOP WILD-TYPE"   "SPOP MUTATED" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-HC-7212     TCGA-HC-7213     TCGA-HC-7230     TCGA-HC-7231 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-HC-7233     TCGA-HC-7736     TCGA-HC-7737     TCGA-HC-7740 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-HC-7742     TCGA-HC-7744     TCGA-HC-7747     TCGA-HC-7748 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-HC-7749     TCGA-HC-7750     TCGA-HC-7752     TCGA-HC-7817 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-HC-7818     TCGA-HC-7821     TCGA-HC-8216     TCGA-HC-8265 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-HC-A4ZV     TCGA-HC-A6AL     TCGA-HC-A6AS     TCGA-HC-A6HX 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-HI-7168     TCGA-HI-7169     TCGA-HI-7170     TCGA-HI-7171 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-J4-8198     TCGA-J4-8200     TCGA-J4-A67N 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-CH-5737     TCGA-CH-5738     TCGA-CH-5739     TCGA-CH-5740 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-CH-5741     TCGA-CH-5744     TCGA-CH-5745     TCGA-CH-5746 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-CH-5748     TCGA-CH-5750     TCGA-CH-5751     TCGA-CH-5752 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-CH-5753     TCGA-CH-5754     TCGA-CH-5761     TCGA-CH-5762 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-CH-5763     TCGA-CH-5764     TCGA-CH-5765     TCGA-CH-5766 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-CH-5767     TCGA-CH-5768     TCGA-CH-5771     TCGA-CH-5772 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-CH-5788     TCGA-CH-5789     TCGA-CH-5790     TCGA-CH-5791 
  "SPOP MUTATED" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-CH-5792     TCGA-CH-5794     TCGA-EJ-5494     TCGA-EJ-5495 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-EJ-5496     TCGA-EJ-5497     TCGA-EJ-5498     TCGA-EJ-5499 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-EJ-5501     TCGA-EJ-5502     TCGA-EJ-5503     TCGA-EJ-5504 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-EJ-5505     TCGA-EJ-5506     TCGA-EJ-5507     TCGA-EJ-5508 
  "SPOP MUTATED" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-EJ-5509     TCGA-EJ-5510     TCGA-EJ-5511     TCGA-EJ-5512 
  "SPOP MUTATED" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-EJ-5514     TCGA-EJ-5515     TCGA-EJ-5516     TCGA-EJ-5517 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-EJ-5518     TCGA-EJ-5519     TCGA-EJ-5521     TCGA-EJ-5522 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-EJ-5524     TCGA-EJ-5525     TCGA-EJ-5526     TCGA-EJ-5527 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-EJ-5530     TCGA-EJ-5532     TCGA-EJ-5542     TCGA-EJ-7115 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE"   "SPOP MUTATED" 
    TCGA-EJ-7123     TCGA-EJ-7125     TCGA-EJ-7314     TCGA-EJ-7315 
  "SPOP MUTATED" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-EJ-7317     TCGA-EJ-7321     TCGA-EJ-7327     TCGA-EJ-7328 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-EJ-7330     TCGA-EJ-7331     TCGA-EJ-7781     TCGA-EJ-7783 
  "SPOP MUTATED" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-EJ-7784     TCGA-EJ-7785     TCGA-EJ-7786     TCGA-EJ-7788 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-EJ-7789     TCGA-EJ-7791     TCGA-EJ-7792     TCGA-EJ-7793 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-EJ-7794     TCGA-EJ-7797     TCGA-EJ-8474     TCGA-EJ-A46B 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-EJ-A46D     TCGA-EJ-A46E     TCGA-EJ-A46F     TCGA-EJ-A46H 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-EJ-A46I     TCGA-FC-7708     TCGA-FC-7961     TCGA-FC-A5OB 
"SPOP WILD-TYPE" "SPOP WILD-TYPE"   "SPOP MUTATED" "SPOP WILD-TYPE" 
    TCGA-FC-A66V     TCGA-FC-A6HD     TCGA-G9-6329     TCGA-G9-6332 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-G9-6333     TCGA-G9-6336     TCGA-G9-6338     TCGA-G9-6342 
  "SPOP MUTATED" "SPOP WILD-TYPE"   "SPOP MUTATED" "SPOP WILD-TYPE" 
    TCGA-G9-6343     TCGA-G9-6348     TCGA-G9-6351     TCGA-G9-6353 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-G9-6356     TCGA-G9-6361     TCGA-G9-6362     TCGA-G9-6363 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-G9-6364     TCGA-G9-6365     TCGA-G9-6366     TCGA-G9-6367 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-G9-6369     TCGA-G9-6370     TCGA-G9-6371     TCGA-G9-6377 
  "SPOP MUTATED" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-G9-6378     TCGA-G9-6384     TCGA-G9-6385     TCGA-G9-6494 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-G9-6496     TCGA-G9-6499     TCGA-G9-7510     TCGA-G9-7519 
"SPOP WILD-TYPE" "SPOP WILD-TYPE"   "SPOP MUTATED" "SPOP WILD-TYPE" 
    TCGA-G9-7521     TCGA-G9-7522     TCGA-G9-7523     TCGA-G9-7525 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-H9-7775     TCGA-HC-7075     TCGA-HC-7077     TCGA-HC-7078 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-HC-7079     TCGA-HC-7080     TCGA-HC-7209     TCGA-HC-7211 
"SPOP WILD-TYPE"   "SPOP MUTATED" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-HC-7212     TCGA-HC-7213     TCGA-HC-7230     TCGA-HC-7231 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-HC-7233     TCGA-HC-7736     TCGA-HC-7737     TCGA-HC-7740 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-HC-7742     TCGA-HC-7744     TCGA-HC-7747     TCGA-HC-7748 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-HC-7749     TCGA-HC-7750     TCGA-HC-7752     TCGA-HC-7817 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-HC-7818     TCGA-HC-7821     TCGA-HC-8216     TCGA-HC-8265 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-HC-A4ZV     TCGA-HC-A6AL     TCGA-HC-A6AS     TCGA-HC-A6HX 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-HI-7168     TCGA-HI-7169     TCGA-HI-7170     TCGA-HI-7171 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-J4-8198     TCGA-J4-8200     TCGA-J4-A67N 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-CH-5737     TCGA-CH-5738     TCGA-CH-5739     TCGA-CH-5740 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-CH-5741     TCGA-CH-5744     TCGA-CH-5745     TCGA-CH-5746 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-CH-5748     TCGA-CH-5750     TCGA-CH-5751     TCGA-CH-5752 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-CH-5753     TCGA-CH-5754     TCGA-CH-5761     TCGA-CH-5762 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-CH-5763     TCGA-CH-5764     TCGA-CH-5765     TCGA-CH-5766 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-CH-5767     TCGA-CH-5768     TCGA-CH-5771     TCGA-CH-5772 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-CH-5788     TCGA-CH-5789     TCGA-CH-5790     TCGA-CH-5791 
  "SPOP MUTATED" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-CH-5792     TCGA-CH-5794     TCGA-EJ-5494     TCGA-EJ-5495 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-EJ-5496     TCGA-EJ-5497     TCGA-EJ-5498     TCGA-EJ-5499 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-EJ-5501     TCGA-EJ-5502     TCGA-EJ-5503     TCGA-EJ-5504 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-EJ-5505     TCGA-EJ-5506     TCGA-EJ-5507     TCGA-EJ-5508 
  "SPOP MUTATED" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-EJ-5509     TCGA-EJ-5510     TCGA-EJ-5511     TCGA-EJ-5512 
  "SPOP MUTATED" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-EJ-5514     TCGA-EJ-5515     TCGA-EJ-5516     TCGA-EJ-5517 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-EJ-5518     TCGA-EJ-5519     TCGA-EJ-5521     TCGA-EJ-5522 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-EJ-5524     TCGA-EJ-5525     TCGA-EJ-5526     TCGA-EJ-5527 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-EJ-5530     TCGA-EJ-5532     TCGA-EJ-5542     TCGA-EJ-7115 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE"   "SPOP MUTATED" 
    TCGA-EJ-7123     TCGA-EJ-7125     TCGA-EJ-7314     TCGA-EJ-7315 
  "SPOP MUTATED" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-EJ-7317     TCGA-EJ-7321     TCGA-EJ-7327     TCGA-EJ-7328 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-EJ-7330     TCGA-EJ-7331     TCGA-EJ-7781     TCGA-EJ-7783 
  "SPOP MUTATED" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-EJ-7784     TCGA-EJ-7785     TCGA-EJ-7786     TCGA-EJ-7788 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-EJ-7789     TCGA-EJ-7791     TCGA-EJ-7792     TCGA-EJ-7793 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-EJ-7794     TCGA-EJ-7797     TCGA-EJ-8474     TCGA-EJ-A46B 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-EJ-A46D     TCGA-EJ-A46E     TCGA-EJ-A46F     TCGA-EJ-A46H 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-EJ-A46I     TCGA-FC-7708     TCGA-FC-7961     TCGA-FC-A5OB 
"SPOP WILD-TYPE" "SPOP WILD-TYPE"   "SPOP MUTATED" "SPOP WILD-TYPE" 
    TCGA-FC-A66V     TCGA-FC-A6HD     TCGA-G9-6329     TCGA-G9-6332 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-G9-6333     TCGA-G9-6336     TCGA-G9-6338     TCGA-G9-6342 
  "SPOP MUTATED" "SPOP WILD-TYPE"   "SPOP MUTATED" "SPOP WILD-TYPE" 
    TCGA-G9-6343     TCGA-G9-6348     TCGA-G9-6351     TCGA-G9-6353 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-G9-6356     TCGA-G9-6361     TCGA-G9-6362     TCGA-G9-6363 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-G9-6364     TCGA-G9-6365     TCGA-G9-6366     TCGA-G9-6367 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-G9-6369     TCGA-G9-6370     TCGA-G9-6371     TCGA-G9-6377 
  "SPOP MUTATED" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-G9-6378     TCGA-G9-6384     TCGA-G9-6385     TCGA-G9-6494 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-G9-6496     TCGA-G9-6499     TCGA-G9-7510     TCGA-G9-7519 
"SPOP WILD-TYPE" "SPOP WILD-TYPE"   "SPOP MUTATED" "SPOP WILD-TYPE" 
    TCGA-G9-7521     TCGA-G9-7522     TCGA-G9-7523     TCGA-G9-7525 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-H9-7775     TCGA-HC-7075     TCGA-HC-7077     TCGA-HC-7078 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-HC-7079     TCGA-HC-7080     TCGA-HC-7209     TCGA-HC-7211 
"SPOP WILD-TYPE"   "SPOP MUTATED" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-HC-7212     TCGA-HC-7213     TCGA-HC-7230     TCGA-HC-7231 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-HC-7233     TCGA-HC-7736     TCGA-HC-7737     TCGA-HC-7740 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-HC-7742     TCGA-HC-7744     TCGA-HC-7747     TCGA-HC-7748 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-HC-7749     TCGA-HC-7750     TCGA-HC-7752     TCGA-HC-7817 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-HC-7818     TCGA-HC-7821     TCGA-HC-8216     TCGA-HC-8265 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-HC-A4ZV     TCGA-HC-A6AL     TCGA-HC-A6AS     TCGA-HC-A6HX 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-HI-7168     TCGA-HI-7169     TCGA-HI-7170     TCGA-HI-7171 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
    TCGA-J4-8198     TCGA-J4-8200     TCGA-J4-A67N 
"SPOP WILD-TYPE" "SPOP WILD-TYPE" "SPOP WILD-TYPE" 
[1] "hr=" "1"  
D2V2, continuous
                vv
clus             T2 T3 T4
  SPOP MUTATED    6  6  0
  SPOP WILD-TYPE 67 85  5
D2V3, multiclass
    clus
vv   SPOP MUTATED SPOP WILD-TYPE
  T2            6             67
  T3            6             85
  T4            0              5
D2V4, binary
                cls
clus               0   1
  SPOP MUTATED    11   1
  SPOP WILD-TYPE 125  15
[1] "tbl2"
                cls
clus             [,1] [,2]
  SPOP MUTATED     11    1
  SPOP WILD-TYPE  125   15
   clus
vv  SPOP MUTATED SPOP WILD-TYPE
  0           11            125
  1            1             15
                vv
clus              R0  R1  RX
  SPOP MUTATED     9   2   0
  SPOP WILD-TYPE 118  31   2
D2V5, multiclass
    clus
vv   SPOP MUTATED SPOP WILD-TYPE
  R0            9            118
  R1            2             31
  RX            0              2
D2V6, continuous
D2V7, continuous
D2V8, continuous
D2V9, continuous
D2V10, continuous
D2V11, continuous
D2V12, continuous
D2V13, continuous
D2V14, continuous

Clustering(3) Variable = PTEN MUTATION ANALYSIS
D3V1, survival
                sevent
clus2              0   1
  PTEN MUTATED     9   0
  PTEN WILD-TYPE 161   1
  PTEN MUTATED PTEN WILD-TYPE 
             9            162 
  PTEN MUTATED PTEN WILD-TYPE 
             0              1 
$`PTEN MUTATED`
TCGA-CH-5737 TCGA-CH-5740 TCGA-CH-5791 TCGA-EJ-7791 TCGA-FC-7961 TCGA-G9-6366 
        2.99         1.02        33.01        19.59         2.30         3.32 
TCGA-HC-7212 TCGA-HC-7230 TCGA-HC-A6AL 
       28.96         1.68         2.20 

$`PTEN WILD-TYPE`
TCGA-CH-5738 TCGA-CH-5739 TCGA-CH-5741 TCGA-CH-5744 TCGA-CH-5745 TCGA-CH-5746 
        6.97        22.06        12.99         1.97         2.99        24.03 
TCGA-CH-5748 TCGA-CH-5750 TCGA-CH-5751 TCGA-CH-5752 TCGA-CH-5753 TCGA-CH-5754 
        1.02        12.99        35.01        30.97         1.02         2.04 
TCGA-CH-5761 TCGA-CH-5762 TCGA-CH-5763 TCGA-CH-5764 TCGA-CH-5765 TCGA-CH-5766 
        0.92        44.02        12.00         1.02        23.01         1.02 
TCGA-CH-5767 TCGA-CH-5768 TCGA-CH-5771 TCGA-CH-5772 TCGA-CH-5788 TCGA-CH-5789 
       15.06        24.03        12.99        15.95        26.96         9.96 
TCGA-CH-5790 TCGA-CH-5792 TCGA-CH-5794 TCGA-EJ-5494 TCGA-EJ-5495 TCGA-EJ-5496 
       32.02         2.99        28.96        27.12        33.07        19.53 
TCGA-EJ-5497 TCGA-EJ-5498 TCGA-EJ-5499 TCGA-EJ-5501 TCGA-EJ-5502 TCGA-EJ-5503 
       13.02        29.75        17.49        30.77         8.02        23.54 
TCGA-EJ-5504 TCGA-EJ-5505 TCGA-EJ-5506 TCGA-EJ-5507 TCGA-EJ-5508 TCGA-EJ-5509 
       28.93        30.28        27.19        23.90        38.93        36.03 
TCGA-EJ-5510 TCGA-EJ-5511 TCGA-EJ-5512 TCGA-EJ-5514 TCGA-EJ-5515 TCGA-EJ-5516 
       36.66        32.02        38.53        36.23        40.77        46.55 
TCGA-EJ-5517 TCGA-EJ-5518 TCGA-EJ-5519 TCGA-EJ-5521 TCGA-EJ-5522 TCGA-EJ-5524 
       47.80        52.27        43.89        51.88        48.07        43.07 
TCGA-EJ-5525 TCGA-EJ-5526 TCGA-EJ-5527 TCGA-EJ-5530 TCGA-EJ-5532 TCGA-EJ-5542 
       36.66        38.76        39.75        41.82        48.03        29.06 
TCGA-EJ-7115 TCGA-EJ-7123 TCGA-EJ-7125 TCGA-EJ-7314 TCGA-EJ-7315 TCGA-EJ-7317 
       26.99        48.99        61.15         9.70         9.50         9.37 
TCGA-EJ-7321 TCGA-EJ-7327 TCGA-EJ-7328 TCGA-EJ-7330 TCGA-EJ-7331 TCGA-EJ-7781 
        7.66         5.75         5.59         6.28         0.30         5.56 
TCGA-EJ-7783 TCGA-EJ-7784 TCGA-EJ-7785 TCGA-EJ-7786 TCGA-EJ-7788 TCGA-EJ-7789 
        4.31         5.49         8.48        14.53         1.71        18.15 
TCGA-EJ-7792 TCGA-EJ-7793 TCGA-EJ-7794 TCGA-EJ-7797 TCGA-EJ-8474 TCGA-EJ-A46B 
       17.29         1.41        23.01        12.13        10.32         5.33 
TCGA-EJ-A46D TCGA-EJ-A46E TCGA-EJ-A46F TCGA-EJ-A46H TCGA-EJ-A46I TCGA-FC-7708 
        4.21        17.06         9.83         7.50        22.09         1.05 
TCGA-FC-A5OB TCGA-FC-A66V TCGA-FC-A6HD TCGA-G9-6329 TCGA-G9-6332 TCGA-G9-6333 
        8.98         4.01         1.78        41.62        65.92        65.95 
TCGA-G9-6336 TCGA-G9-6338 TCGA-G9-6342 TCGA-G9-6343 TCGA-G9-6348 TCGA-G9-6351 
       65.98        65.98        55.76        18.21        49.81        46.13 
TCGA-G9-6353 TCGA-G9-6356 TCGA-G9-6361 TCGA-G9-6362 TCGA-G9-6363 TCGA-G9-6364 
       50.66        47.15        46.52        47.44        45.30        39.39 
TCGA-G9-6365 TCGA-G9-6367 TCGA-G9-6369 TCGA-G9-6370 TCGA-G9-6371 TCGA-G9-6377 
       44.81        40.18        39.95        38.01        40.31        31.50 
TCGA-G9-6378 TCGA-G9-6384 TCGA-G9-6385 TCGA-G9-6494 TCGA-G9-6496 TCGA-G9-6499 
       37.97        25.15        27.29        58.22        56.75        50.73 
TCGA-G9-7510 TCGA-G9-7519 TCGA-G9-7521 TCGA-G9-7522 TCGA-G9-7523 TCGA-G9-7525 
       38.96        27.91        15.98        21.30        28.14        16.83 
TCGA-H9-7775 TCGA-HC-7075 TCGA-HC-7077 TCGA-HC-7078 TCGA-HC-7079 TCGA-HC-7080 
        6.05         2.01        65.98         5.33         2.93         2.01 
TCGA-HC-7209 TCGA-HC-7211 TCGA-HC-7213 TCGA-HC-7231 TCGA-HC-7233 TCGA-HC-7736 
        1.02         0.99         1.97         2.37         1.71         0.99 
TCGA-HC-7737 TCGA-HC-7740 TCGA-HC-7742 TCGA-HC-7744 TCGA-HC-7747 TCGA-HC-7748 
        2.07         1.74         1.48         1.68         1.87        26.04 
TCGA-HC-7749 TCGA-HC-7750 TCGA-HC-7752 TCGA-HC-7817 TCGA-HC-7818 TCGA-HC-7821 
        2.01         1.12         3.22         1.05         1.48         1.84 
TCGA-HC-8216 TCGA-HC-8265 TCGA-HC-A4ZV TCGA-HC-A6AS TCGA-HC-A6HX TCGA-HI-7168 
       22.42        15.98         0.76         1.45         1.22        65.92 
TCGA-HI-7169 TCGA-HI-7170 TCGA-HI-7171 TCGA-J4-8198 TCGA-J4-8200 TCGA-J4-A67N 
       64.08        62.43        66.02         3.22        12.30        16.50 

  PTEN MUTATED PTEN WILD-TYPE 
          1.02           0.30 
  PTEN MUTATED PTEN WILD-TYPE 
         33.01          66.02 
  PTEN MUTATED PTEN WILD-TYPE 
         2.990         20.415 
[1] "1.0 - 33.0 (3.0)"  "0.3 - 66.0 (20.4)"
    TCGA-CH-5737     TCGA-CH-5738     TCGA-CH-5739     TCGA-CH-5740 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
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"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
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"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
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"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
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"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
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"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
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"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
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"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
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"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EJ-5501     TCGA-EJ-5502     TCGA-EJ-5503     TCGA-EJ-5504 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EJ-5505     TCGA-EJ-5506     TCGA-EJ-5507     TCGA-EJ-5508 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EJ-5509     TCGA-EJ-5510     TCGA-EJ-5511     TCGA-EJ-5512 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EJ-5514     TCGA-EJ-5515     TCGA-EJ-5516     TCGA-EJ-5517 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EJ-5518     TCGA-EJ-5519     TCGA-EJ-5521     TCGA-EJ-5522 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EJ-5524     TCGA-EJ-5525     TCGA-EJ-5526     TCGA-EJ-5527 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
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"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EJ-7123     TCGA-EJ-7125     TCGA-EJ-7314     TCGA-EJ-7315 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
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"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EJ-7330     TCGA-EJ-7331     TCGA-EJ-7781     TCGA-EJ-7783 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
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"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EJ-7789     TCGA-EJ-7791     TCGA-EJ-7792     TCGA-EJ-7793 
"PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EJ-7794     TCGA-EJ-7797     TCGA-EJ-8474     TCGA-EJ-A46B 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EJ-A46D     TCGA-EJ-A46E     TCGA-EJ-A46F     TCGA-EJ-A46H 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EJ-A46I     TCGA-FC-7708     TCGA-FC-7961     TCGA-FC-A5OB 
"PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-FC-A66V     TCGA-FC-A6HD     TCGA-G9-6329     TCGA-G9-6332 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-G9-6333     TCGA-G9-6336     TCGA-G9-6338     TCGA-G9-6342 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-G9-6343     TCGA-G9-6348     TCGA-G9-6351     TCGA-G9-6353 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-G9-6356     TCGA-G9-6361     TCGA-G9-6362     TCGA-G9-6363 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-G9-6364     TCGA-G9-6365     TCGA-G9-6366     TCGA-G9-6367 
"PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-G9-6369     TCGA-G9-6370     TCGA-G9-6371     TCGA-G9-6377 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-G9-6378     TCGA-G9-6384     TCGA-G9-6385     TCGA-G9-6494 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-G9-6496     TCGA-G9-6499     TCGA-G9-7510     TCGA-G9-7519 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-G9-7521     TCGA-G9-7522     TCGA-G9-7523     TCGA-G9-7525 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-H9-7775     TCGA-HC-7075     TCGA-HC-7077     TCGA-HC-7078 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-HC-7079     TCGA-HC-7080     TCGA-HC-7209     TCGA-HC-7211 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-HC-7212     TCGA-HC-7213     TCGA-HC-7230     TCGA-HC-7231 
  "PTEN MUTATED" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-HC-7233     TCGA-HC-7736     TCGA-HC-7737     TCGA-HC-7740 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
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"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-HC-7749     TCGA-HC-7750     TCGA-HC-7752     TCGA-HC-7817 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
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"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-HC-A4ZV     TCGA-HC-A6AL     TCGA-HC-A6AS     TCGA-HC-A6HX 
"PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-HI-7168     TCGA-HI-7169     TCGA-HI-7170     TCGA-HI-7171 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-J4-8198     TCGA-J4-8200     TCGA-J4-A67N 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-CH-5737     TCGA-CH-5738     TCGA-CH-5739     TCGA-CH-5740 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
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"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-CH-5748     TCGA-CH-5750     TCGA-CH-5751     TCGA-CH-5752 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-CH-5753     TCGA-CH-5754     TCGA-CH-5761     TCGA-CH-5762 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-CH-5763     TCGA-CH-5764     TCGA-CH-5765     TCGA-CH-5766 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-CH-5767     TCGA-CH-5768     TCGA-CH-5771     TCGA-CH-5772 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-CH-5788     TCGA-CH-5789     TCGA-CH-5790     TCGA-CH-5791 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-CH-5792     TCGA-CH-5794     TCGA-EJ-5494     TCGA-EJ-5495 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EJ-5496     TCGA-EJ-5497     TCGA-EJ-5498     TCGA-EJ-5499 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EJ-5501     TCGA-EJ-5502     TCGA-EJ-5503     TCGA-EJ-5504 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EJ-5505     TCGA-EJ-5506     TCGA-EJ-5507     TCGA-EJ-5508 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EJ-5509     TCGA-EJ-5510     TCGA-EJ-5511     TCGA-EJ-5512 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EJ-5514     TCGA-EJ-5515     TCGA-EJ-5516     TCGA-EJ-5517 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EJ-5518     TCGA-EJ-5519     TCGA-EJ-5521     TCGA-EJ-5522 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EJ-5524     TCGA-EJ-5525     TCGA-EJ-5526     TCGA-EJ-5527 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EJ-5530     TCGA-EJ-5532     TCGA-EJ-5542     TCGA-EJ-7115 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EJ-7123     TCGA-EJ-7125     TCGA-EJ-7314     TCGA-EJ-7315 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EJ-7317     TCGA-EJ-7321     TCGA-EJ-7327     TCGA-EJ-7328 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EJ-7330     TCGA-EJ-7331     TCGA-EJ-7781     TCGA-EJ-7783 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EJ-7784     TCGA-EJ-7785     TCGA-EJ-7786     TCGA-EJ-7788 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EJ-7789     TCGA-EJ-7791     TCGA-EJ-7792     TCGA-EJ-7793 
"PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EJ-7794     TCGA-EJ-7797     TCGA-EJ-8474     TCGA-EJ-A46B 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EJ-A46D     TCGA-EJ-A46E     TCGA-EJ-A46F     TCGA-EJ-A46H 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EJ-A46I     TCGA-FC-7708     TCGA-FC-7961     TCGA-FC-A5OB 
"PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-FC-A66V     TCGA-FC-A6HD     TCGA-G9-6329     TCGA-G9-6332 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-G9-6333     TCGA-G9-6336     TCGA-G9-6338     TCGA-G9-6342 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-G9-6343     TCGA-G9-6348     TCGA-G9-6351     TCGA-G9-6353 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-G9-6356     TCGA-G9-6361     TCGA-G9-6362     TCGA-G9-6363 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-G9-6364     TCGA-G9-6365     TCGA-G9-6366     TCGA-G9-6367 
"PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-G9-6369     TCGA-G9-6370     TCGA-G9-6371     TCGA-G9-6377 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-G9-6378     TCGA-G9-6384     TCGA-G9-6385     TCGA-G9-6494 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-G9-6496     TCGA-G9-6499     TCGA-G9-7510     TCGA-G9-7519 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-G9-7521     TCGA-G9-7522     TCGA-G9-7523     TCGA-G9-7525 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-H9-7775     TCGA-HC-7075     TCGA-HC-7077     TCGA-HC-7078 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-HC-7079     TCGA-HC-7080     TCGA-HC-7209     TCGA-HC-7211 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-HC-7212     TCGA-HC-7213     TCGA-HC-7230     TCGA-HC-7231 
  "PTEN MUTATED" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-HC-7233     TCGA-HC-7736     TCGA-HC-7737     TCGA-HC-7740 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-HC-7742     TCGA-HC-7744     TCGA-HC-7747     TCGA-HC-7748 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-HC-7749     TCGA-HC-7750     TCGA-HC-7752     TCGA-HC-7817 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
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"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-HC-A4ZV     TCGA-HC-A6AL     TCGA-HC-A6AS     TCGA-HC-A6HX 
"PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-HI-7168     TCGA-HI-7169     TCGA-HI-7170     TCGA-HI-7171 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-J4-8198     TCGA-J4-8200     TCGA-J4-A67N 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-CH-5737     TCGA-CH-5738     TCGA-CH-5739     TCGA-CH-5740 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-CH-5741     TCGA-CH-5744     TCGA-CH-5745     TCGA-CH-5746 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-CH-5748     TCGA-CH-5750     TCGA-CH-5751     TCGA-CH-5752 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-CH-5753     TCGA-CH-5754     TCGA-CH-5761     TCGA-CH-5762 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-CH-5763     TCGA-CH-5764     TCGA-CH-5765     TCGA-CH-5766 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-CH-5767     TCGA-CH-5768     TCGA-CH-5771     TCGA-CH-5772 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-CH-5788     TCGA-CH-5789     TCGA-CH-5790     TCGA-CH-5791 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-CH-5792     TCGA-CH-5794     TCGA-EJ-5494     TCGA-EJ-5495 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EJ-5496     TCGA-EJ-5497     TCGA-EJ-5498     TCGA-EJ-5499 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EJ-5501     TCGA-EJ-5502     TCGA-EJ-5503     TCGA-EJ-5504 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EJ-5505     TCGA-EJ-5506     TCGA-EJ-5507     TCGA-EJ-5508 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EJ-5509     TCGA-EJ-5510     TCGA-EJ-5511     TCGA-EJ-5512 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EJ-5514     TCGA-EJ-5515     TCGA-EJ-5516     TCGA-EJ-5517 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EJ-5518     TCGA-EJ-5519     TCGA-EJ-5521     TCGA-EJ-5522 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EJ-5524     TCGA-EJ-5525     TCGA-EJ-5526     TCGA-EJ-5527 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EJ-5530     TCGA-EJ-5532     TCGA-EJ-5542     TCGA-EJ-7115 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EJ-7123     TCGA-EJ-7125     TCGA-EJ-7314     TCGA-EJ-7315 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EJ-7317     TCGA-EJ-7321     TCGA-EJ-7327     TCGA-EJ-7328 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EJ-7330     TCGA-EJ-7331     TCGA-EJ-7781     TCGA-EJ-7783 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EJ-7784     TCGA-EJ-7785     TCGA-EJ-7786     TCGA-EJ-7788 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EJ-7789     TCGA-EJ-7791     TCGA-EJ-7792     TCGA-EJ-7793 
"PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EJ-7794     TCGA-EJ-7797     TCGA-EJ-8474     TCGA-EJ-A46B 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EJ-A46D     TCGA-EJ-A46E     TCGA-EJ-A46F     TCGA-EJ-A46H 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-EJ-A46I     TCGA-FC-7708     TCGA-FC-7961     TCGA-FC-A5OB 
"PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-FC-A66V     TCGA-FC-A6HD     TCGA-G9-6329     TCGA-G9-6332 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-G9-6333     TCGA-G9-6336     TCGA-G9-6338     TCGA-G9-6342 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-G9-6343     TCGA-G9-6348     TCGA-G9-6351     TCGA-G9-6353 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-G9-6356     TCGA-G9-6361     TCGA-G9-6362     TCGA-G9-6363 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-G9-6364     TCGA-G9-6365     TCGA-G9-6366     TCGA-G9-6367 
"PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-G9-6369     TCGA-G9-6370     TCGA-G9-6371     TCGA-G9-6377 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-G9-6378     TCGA-G9-6384     TCGA-G9-6385     TCGA-G9-6494 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-G9-6496     TCGA-G9-6499     TCGA-G9-7510     TCGA-G9-7519 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-G9-7521     TCGA-G9-7522     TCGA-G9-7523     TCGA-G9-7525 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-H9-7775     TCGA-HC-7075     TCGA-HC-7077     TCGA-HC-7078 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-HC-7079     TCGA-HC-7080     TCGA-HC-7209     TCGA-HC-7211 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-HC-7212     TCGA-HC-7213     TCGA-HC-7230     TCGA-HC-7231 
  "PTEN MUTATED" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-HC-7233     TCGA-HC-7736     TCGA-HC-7737     TCGA-HC-7740 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-HC-7742     TCGA-HC-7744     TCGA-HC-7747     TCGA-HC-7748 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-HC-7749     TCGA-HC-7750     TCGA-HC-7752     TCGA-HC-7817 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-HC-7818     TCGA-HC-7821     TCGA-HC-8216     TCGA-HC-8265 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-HC-A4ZV     TCGA-HC-A6AL     TCGA-HC-A6AS     TCGA-HC-A6HX 
"PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-HI-7168     TCGA-HI-7169     TCGA-HI-7170     TCGA-HI-7171 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-J4-8198     TCGA-J4-8200     TCGA-J4-A67N 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
[1] "hr=" "1"  
D3V2, continuous
                vv
clus             T2 T3 T4
  PTEN MUTATED    6  3  0
  PTEN WILD-TYPE 67 88  5
D3V3, multiclass
    clus
vv   PTEN MUTATED PTEN WILD-TYPE
  T2            6             67
  T3            3             88
  T4            0              5
D3V4, binary
                cls
clus               0   1
  PTEN MUTATED     8   0
  PTEN WILD-TYPE 128  16
[1] "tbl2"
                cls
clus             [,1] [,2]
  PTEN MUTATED      8    0
  PTEN WILD-TYPE  128   16
   clus
vv  PTEN MUTATED PTEN WILD-TYPE
  0            8            128
  1            0             16
                vv
clus              R0  R1  RX
  PTEN MUTATED     6   1   0
  PTEN WILD-TYPE 121  32   2
D3V5, multiclass
    clus
vv   PTEN MUTATED PTEN WILD-TYPE
  R0            6            121
  R1            1             32
  RX            0              2
D3V6, continuous
D3V7, continuous
D3V8, continuous
D3V9, continuous
D3V10, continuous
D3V11, continuous
D3V12, continuous
D3V13, continuous
D3V14, continuous

Clustering(4) Variable = PCDHAC2 MUTATION ANALYSIS
D4V1, survival
                   sevent
clus2                 0   1
  PCDHAC2 MUTATED    19   0
  PCDHAC2 WILD-TYPE 151   1
  PCDHAC2 MUTATED PCDHAC2 WILD-TYPE 
               19               152 
  PCDHAC2 MUTATED PCDHAC2 WILD-TYPE 
                0                 1 
$`PCDHAC2 MUTATED`
TCGA-CH-5741 TCGA-CH-5754 TCGA-EJ-5503 TCGA-EJ-5504 TCGA-EJ-5506 TCGA-EJ-5514 
       12.99         2.04        23.54        28.93        27.19        36.23 
TCGA-EJ-5519 TCGA-EJ-5542 TCGA-EJ-7314 TCGA-EJ-7781 TCGA-EJ-7783 TCGA-FC-7961 
       43.89        29.06         9.70         5.56         4.31         2.30 
TCGA-G9-6333 TCGA-G9-6351 TCGA-G9-6353 TCGA-G9-6384 TCGA-G9-6499 TCGA-HC-7080 
       65.95        46.13        50.66        25.15        50.73         2.01 
TCGA-HC-7737 
        2.07 

$`PCDHAC2 WILD-TYPE`
TCGA-CH-5737 TCGA-CH-5738 TCGA-CH-5739 TCGA-CH-5740 TCGA-CH-5744 TCGA-CH-5745 
        2.99         6.97        22.06         1.02         1.97         2.99 
TCGA-CH-5746 TCGA-CH-5748 TCGA-CH-5750 TCGA-CH-5751 TCGA-CH-5752 TCGA-CH-5753 
       24.03         1.02        12.99        35.01        30.97         1.02 
TCGA-CH-5761 TCGA-CH-5762 TCGA-CH-5763 TCGA-CH-5764 TCGA-CH-5765 TCGA-CH-5766 
        0.92        44.02        12.00         1.02        23.01         1.02 
TCGA-CH-5767 TCGA-CH-5768 TCGA-CH-5771 TCGA-CH-5772 TCGA-CH-5788 TCGA-CH-5789 
       15.06        24.03        12.99        15.95        26.96         9.96 
TCGA-CH-5790 TCGA-CH-5791 TCGA-CH-5792 TCGA-CH-5794 TCGA-EJ-5494 TCGA-EJ-5495 
       32.02        33.01         2.99        28.96        27.12        33.07 
TCGA-EJ-5496 TCGA-EJ-5497 TCGA-EJ-5498 TCGA-EJ-5499 TCGA-EJ-5501 TCGA-EJ-5502 
       19.53        13.02        29.75        17.49        30.77         8.02 
TCGA-EJ-5505 TCGA-EJ-5507 TCGA-EJ-5508 TCGA-EJ-5509 TCGA-EJ-5510 TCGA-EJ-5511 
       30.28        23.90        38.93        36.03        36.66        32.02 
TCGA-EJ-5512 TCGA-EJ-5515 TCGA-EJ-5516 TCGA-EJ-5517 TCGA-EJ-5518 TCGA-EJ-5521 
       38.53        40.77        46.55        47.80        52.27        51.88 
TCGA-EJ-5522 TCGA-EJ-5524 TCGA-EJ-5525 TCGA-EJ-5526 TCGA-EJ-5527 TCGA-EJ-5530 
       48.07        43.07        36.66        38.76        39.75        41.82 
TCGA-EJ-5532 TCGA-EJ-7115 TCGA-EJ-7123 TCGA-EJ-7125 TCGA-EJ-7315 TCGA-EJ-7317 
       48.03        26.99        48.99        61.15         9.50         9.37 
TCGA-EJ-7321 TCGA-EJ-7327 TCGA-EJ-7328 TCGA-EJ-7330 TCGA-EJ-7331 TCGA-EJ-7784 
        7.66         5.75         5.59         6.28         0.30         5.49 
TCGA-EJ-7785 TCGA-EJ-7786 TCGA-EJ-7788 TCGA-EJ-7789 TCGA-EJ-7791 TCGA-EJ-7792 
        8.48        14.53         1.71        18.15        19.59        17.29 
TCGA-EJ-7793 TCGA-EJ-7794 TCGA-EJ-7797 TCGA-EJ-8474 TCGA-EJ-A46B TCGA-EJ-A46D 
        1.41        23.01        12.13        10.32         5.33         4.21 
TCGA-EJ-A46E TCGA-EJ-A46F TCGA-EJ-A46H TCGA-EJ-A46I TCGA-FC-7708 TCGA-FC-A5OB 
       17.06         9.83         7.50        22.09         1.05         8.98 
TCGA-FC-A66V TCGA-FC-A6HD TCGA-G9-6329 TCGA-G9-6332 TCGA-G9-6336 TCGA-G9-6338 
        4.01         1.78        41.62        65.92        65.98        65.98 
TCGA-G9-6342 TCGA-G9-6343 TCGA-G9-6348 TCGA-G9-6356 TCGA-G9-6361 TCGA-G9-6362 
       55.76        18.21        49.81        47.15        46.52        47.44 
TCGA-G9-6363 TCGA-G9-6364 TCGA-G9-6365 TCGA-G9-6366 TCGA-G9-6367 TCGA-G9-6369 
       45.30        39.39        44.81         3.32        40.18        39.95 
TCGA-G9-6370 TCGA-G9-6371 TCGA-G9-6377 TCGA-G9-6378 TCGA-G9-6385 TCGA-G9-6494 
       38.01        40.31        31.50        37.97        27.29        58.22 
TCGA-G9-6496 TCGA-G9-7510 TCGA-G9-7519 TCGA-G9-7521 TCGA-G9-7522 TCGA-G9-7523 
       56.75        38.96        27.91        15.98        21.30        28.14 
TCGA-G9-7525 TCGA-H9-7775 TCGA-HC-7075 TCGA-HC-7077 TCGA-HC-7078 TCGA-HC-7079 
       16.83         6.05         2.01        65.98         5.33         2.93 
TCGA-HC-7209 TCGA-HC-7211 TCGA-HC-7212 TCGA-HC-7213 TCGA-HC-7230 TCGA-HC-7231 
        1.02         0.99        28.96         1.97         1.68         2.37 
TCGA-HC-7233 TCGA-HC-7736 TCGA-HC-7740 TCGA-HC-7742 TCGA-HC-7744 TCGA-HC-7747 
        1.71         0.99         1.74         1.48         1.68         1.87 
TCGA-HC-7748 TCGA-HC-7749 TCGA-HC-7750 TCGA-HC-7752 TCGA-HC-7817 TCGA-HC-7818 
       26.04         2.01         1.12         3.22         1.05         1.48 
TCGA-HC-7821 TCGA-HC-8216 TCGA-HC-8265 TCGA-HC-A4ZV TCGA-HC-A6AL TCGA-HC-A6AS 
        1.84        22.42        15.98         0.76         2.20         1.45 
TCGA-HC-A6HX TCGA-HI-7168 TCGA-HI-7169 TCGA-HI-7170 TCGA-HI-7171 TCGA-J4-8198 
        1.22        65.92        64.08        62.43        66.02         3.22 
TCGA-J4-8200 TCGA-J4-A67N 
       12.30        16.50 

  PCDHAC2 MUTATED PCDHAC2 WILD-TYPE 
             2.01              0.30 
  PCDHAC2 MUTATED PCDHAC2 WILD-TYPE 
            65.95             66.02 
  PCDHAC2 MUTATED PCDHAC2 WILD-TYPE 
            25.15             17.82 
[1] "2.0 - 66.0 (25.1)" "0.3 - 66.0 (17.8)"
       TCGA-CH-5737        TCGA-CH-5738        TCGA-CH-5739        TCGA-CH-5740 
"PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" 
       TCGA-CH-5741        TCGA-CH-5744        TCGA-CH-5745        TCGA-CH-5746 
  "PCDHAC2 MUTATED" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" 
       TCGA-CH-5748        TCGA-CH-5750        TCGA-CH-5751        TCGA-CH-5752 
"PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" 
       TCGA-CH-5753        TCGA-CH-5754        TCGA-CH-5761        TCGA-CH-5762 
"PCDHAC2 WILD-TYPE"   "PCDHAC2 MUTATED" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" 
       TCGA-CH-5763        TCGA-CH-5764        TCGA-CH-5765        TCGA-CH-5766 
"PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" 
       TCGA-CH-5767        TCGA-CH-5768        TCGA-CH-5771        TCGA-CH-5772 
"PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" 
       TCGA-CH-5788        TCGA-CH-5789        TCGA-CH-5790        TCGA-CH-5791 
"PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" 
       TCGA-CH-5792        TCGA-CH-5794        TCGA-EJ-5494        TCGA-EJ-5495 
"PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" 
       TCGA-EJ-5496        TCGA-EJ-5497        TCGA-EJ-5498        TCGA-EJ-5499 
"PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" 
       TCGA-EJ-5501        TCGA-EJ-5502        TCGA-EJ-5503        TCGA-EJ-5504 
"PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE"   "PCDHAC2 MUTATED"   "PCDHAC2 MUTATED" 
       TCGA-EJ-5505        TCGA-EJ-5506        TCGA-EJ-5507        TCGA-EJ-5508 
"PCDHAC2 WILD-TYPE"   "PCDHAC2 MUTATED" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" 
       TCGA-EJ-5509        TCGA-EJ-5510        TCGA-EJ-5511        TCGA-EJ-5512 
"PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" 
       TCGA-EJ-5514        TCGA-EJ-5515        TCGA-EJ-5516        TCGA-EJ-5517 
  "PCDHAC2 MUTATED" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" 
       TCGA-EJ-5518        TCGA-EJ-5519        TCGA-EJ-5521        TCGA-EJ-5522 
"PCDHAC2 WILD-TYPE"   "PCDHAC2 MUTATED" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" 
       TCGA-EJ-5524        TCGA-EJ-5525        TCGA-EJ-5526        TCGA-EJ-5527 
"PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" 
       TCGA-EJ-5530        TCGA-EJ-5532        TCGA-EJ-5542        TCGA-EJ-7115 
"PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE"   "PCDHAC2 MUTATED" "PCDHAC2 WILD-TYPE" 
       TCGA-EJ-7123        TCGA-EJ-7125        TCGA-EJ-7314        TCGA-EJ-7315 
"PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE"   "PCDHAC2 MUTATED" "PCDHAC2 WILD-TYPE" 
       TCGA-EJ-7317        TCGA-EJ-7321        TCGA-EJ-7327        TCGA-EJ-7328 
"PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" 
       TCGA-EJ-7330        TCGA-EJ-7331        TCGA-EJ-7781        TCGA-EJ-7783 
"PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE"   "PCDHAC2 MUTATED"   "PCDHAC2 MUTATED" 
       TCGA-EJ-7784        TCGA-EJ-7785        TCGA-EJ-7786        TCGA-EJ-7788 
"PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" 
       TCGA-EJ-7789        TCGA-EJ-7791        TCGA-EJ-7792        TCGA-EJ-7793 
"PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" 
       TCGA-EJ-7794        TCGA-EJ-7797        TCGA-EJ-8474        TCGA-EJ-A46B 
"PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" 
       TCGA-EJ-A46D        TCGA-EJ-A46E        TCGA-EJ-A46F        TCGA-EJ-A46H 
"PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" 
       TCGA-EJ-A46I        TCGA-FC-7708        TCGA-FC-7961        TCGA-FC-A5OB 
"PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE"   "PCDHAC2 MUTATED" "PCDHAC2 WILD-TYPE" 
       TCGA-FC-A66V        TCGA-FC-A6HD        TCGA-G9-6329        TCGA-G9-6332 
"PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" 
       TCGA-G9-6333        TCGA-G9-6336        TCGA-G9-6338        TCGA-G9-6342 
  "PCDHAC2 MUTATED" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" 
       TCGA-G9-6343        TCGA-G9-6348        TCGA-G9-6351        TCGA-G9-6353 
"PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE"   "PCDHAC2 MUTATED"   "PCDHAC2 MUTATED" 
       TCGA-G9-6356        TCGA-G9-6361        TCGA-G9-6362        TCGA-G9-6363 
"PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" 
       TCGA-G9-6364        TCGA-G9-6365        TCGA-G9-6366        TCGA-G9-6367 
"PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" 
       TCGA-G9-6369        TCGA-G9-6370        TCGA-G9-6371        TCGA-G9-6377 
"PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" 
       TCGA-G9-6378        TCGA-G9-6384        TCGA-G9-6385        TCGA-G9-6494 
"PCDHAC2 WILD-TYPE"   "PCDHAC2 MUTATED" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" 
       TCGA-G9-6496        TCGA-G9-6499        TCGA-G9-7510        TCGA-G9-7519 
"PCDHAC2 WILD-TYPE"   "PCDHAC2 MUTATED" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" 
       TCGA-G9-7521        TCGA-G9-7522        TCGA-G9-7523        TCGA-G9-7525 
"PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" 
       TCGA-H9-7775        TCGA-HC-7075        TCGA-HC-7077        TCGA-HC-7078 
"PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" 
       TCGA-HC-7079        TCGA-HC-7080        TCGA-HC-7209        TCGA-HC-7211 
"PCDHAC2 WILD-TYPE"   "PCDHAC2 MUTATED" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" 
       TCGA-HC-7212        TCGA-HC-7213        TCGA-HC-7230        TCGA-HC-7231 
"PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" 
       TCGA-HC-7233        TCGA-HC-7736        TCGA-HC-7737        TCGA-HC-7740 
"PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE"   "PCDHAC2 MUTATED" "PCDHAC2 WILD-TYPE" 
       TCGA-HC-7742        TCGA-HC-7744        TCGA-HC-7747        TCGA-HC-7748 
"PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" 
       TCGA-HC-7749        TCGA-HC-7750        TCGA-HC-7752        TCGA-HC-7817 
"PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" 
       TCGA-HC-7818        TCGA-HC-7821        TCGA-HC-8216        TCGA-HC-8265 
"PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" 
       TCGA-HC-A4ZV        TCGA-HC-A6AL        TCGA-HC-A6AS        TCGA-HC-A6HX 
"PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" 
       TCGA-HI-7168        TCGA-HI-7169        TCGA-HI-7170        TCGA-HI-7171 
"PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" 
       TCGA-J4-8198        TCGA-J4-8200        TCGA-J4-A67N 
"PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" 
       TCGA-CH-5737        TCGA-CH-5738        TCGA-CH-5739        TCGA-CH-5740 
"PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" 
       TCGA-CH-5741        TCGA-CH-5744        TCGA-CH-5745        TCGA-CH-5746 
  "PCDHAC2 MUTATED" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" 
       TCGA-CH-5748        TCGA-CH-5750        TCGA-CH-5751        TCGA-CH-5752 
"PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" 
       TCGA-CH-5753        TCGA-CH-5754        TCGA-CH-5761        TCGA-CH-5762 
"PCDHAC2 WILD-TYPE"   "PCDHAC2 MUTATED" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" 
       TCGA-CH-5763        TCGA-CH-5764        TCGA-CH-5765        TCGA-CH-5766 
"PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" 
       TCGA-CH-5767        TCGA-CH-5768        TCGA-CH-5771        TCGA-CH-5772 
"PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" 
       TCGA-CH-5788        TCGA-CH-5789        TCGA-CH-5790        TCGA-CH-5791 
"PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" 
       TCGA-CH-5792        TCGA-CH-5794        TCGA-EJ-5494        TCGA-EJ-5495 
"PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" 
       TCGA-EJ-5496        TCGA-EJ-5497        TCGA-EJ-5498        TCGA-EJ-5499 
"PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" 
       TCGA-EJ-5501        TCGA-EJ-5502        TCGA-EJ-5503        TCGA-EJ-5504 
"PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE"   "PCDHAC2 MUTATED"   "PCDHAC2 MUTATED" 
       TCGA-EJ-5505        TCGA-EJ-5506        TCGA-EJ-5507        TCGA-EJ-5508 
"PCDHAC2 WILD-TYPE"   "PCDHAC2 MUTATED" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" 
       TCGA-EJ-5509        TCGA-EJ-5510        TCGA-EJ-5511        TCGA-EJ-5512 
"PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" 
       TCGA-EJ-5514        TCGA-EJ-5515        TCGA-EJ-5516        TCGA-EJ-5517 
  "PCDHAC2 MUTATED" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" 
       TCGA-EJ-5518        TCGA-EJ-5519        TCGA-EJ-5521        TCGA-EJ-5522 
"PCDHAC2 WILD-TYPE"   "PCDHAC2 MUTATED" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" 
       TCGA-EJ-5524        TCGA-EJ-5525        TCGA-EJ-5526        TCGA-EJ-5527 
"PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" 
       TCGA-EJ-5530        TCGA-EJ-5532        TCGA-EJ-5542        TCGA-EJ-7115 
"PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE"   "PCDHAC2 MUTATED" "PCDHAC2 WILD-TYPE" 
       TCGA-EJ-7123        TCGA-EJ-7125        TCGA-EJ-7314        TCGA-EJ-7315 
"PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE"   "PCDHAC2 MUTATED" "PCDHAC2 WILD-TYPE" 
       TCGA-EJ-7317        TCGA-EJ-7321        TCGA-EJ-7327        TCGA-EJ-7328 
"PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" 
       TCGA-EJ-7330        TCGA-EJ-7331        TCGA-EJ-7781        TCGA-EJ-7783 
"PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE"   "PCDHAC2 MUTATED"   "PCDHAC2 MUTATED" 
       TCGA-EJ-7784        TCGA-EJ-7785        TCGA-EJ-7786        TCGA-EJ-7788 
"PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" 
       TCGA-EJ-7789        TCGA-EJ-7791        TCGA-EJ-7792        TCGA-EJ-7793 
"PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" 
       TCGA-EJ-7794        TCGA-EJ-7797        TCGA-EJ-8474        TCGA-EJ-A46B 
"PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" 
       TCGA-EJ-A46D        TCGA-EJ-A46E        TCGA-EJ-A46F        TCGA-EJ-A46H 
"PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" 
       TCGA-EJ-A46I        TCGA-FC-7708        TCGA-FC-7961        TCGA-FC-A5OB 
"PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE"   "PCDHAC2 MUTATED" "PCDHAC2 WILD-TYPE" 
       TCGA-FC-A66V        TCGA-FC-A6HD        TCGA-G9-6329        TCGA-G9-6332 
"PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" 
       TCGA-G9-6333        TCGA-G9-6336        TCGA-G9-6338        TCGA-G9-6342 
  "PCDHAC2 MUTATED" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" 
       TCGA-G9-6343        TCGA-G9-6348        TCGA-G9-6351        TCGA-G9-6353 
"PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE"   "PCDHAC2 MUTATED"   "PCDHAC2 MUTATED" 
       TCGA-G9-6356        TCGA-G9-6361        TCGA-G9-6362        TCGA-G9-6363 
"PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" 
       TCGA-G9-6364        TCGA-G9-6365        TCGA-G9-6366        TCGA-G9-6367 
"PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" 
       TCGA-G9-6369        TCGA-G9-6370        TCGA-G9-6371        TCGA-G9-6377 
"PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" 
       TCGA-G9-6378        TCGA-G9-6384        TCGA-G9-6385        TCGA-G9-6494 
"PCDHAC2 WILD-TYPE"   "PCDHAC2 MUTATED" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" 
       TCGA-G9-6496        TCGA-G9-6499        TCGA-G9-7510        TCGA-G9-7519 
"PCDHAC2 WILD-TYPE"   "PCDHAC2 MUTATED" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" 
       TCGA-G9-7521        TCGA-G9-7522        TCGA-G9-7523        TCGA-G9-7525 
"PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" 
       TCGA-H9-7775        TCGA-HC-7075        TCGA-HC-7077        TCGA-HC-7078 
"PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" 
       TCGA-HC-7079        TCGA-HC-7080        TCGA-HC-7209        TCGA-HC-7211 
"PCDHAC2 WILD-TYPE"   "PCDHAC2 MUTATED" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" 
       TCGA-HC-7212        TCGA-HC-7213        TCGA-HC-7230        TCGA-HC-7231 
"PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" 
       TCGA-HC-7233        TCGA-HC-7736        TCGA-HC-7737        TCGA-HC-7740 
"PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE"   "PCDHAC2 MUTATED" "PCDHAC2 WILD-TYPE" 
       TCGA-HC-7742        TCGA-HC-7744        TCGA-HC-7747        TCGA-HC-7748 
"PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" 
       TCGA-HC-7749        TCGA-HC-7750        TCGA-HC-7752        TCGA-HC-7817 
"PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" 
       TCGA-HC-7818        TCGA-HC-7821        TCGA-HC-8216        TCGA-HC-8265 
"PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" 
       TCGA-HC-A4ZV        TCGA-HC-A6AL        TCGA-HC-A6AS        TCGA-HC-A6HX 
"PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" 
       TCGA-HI-7168        TCGA-HI-7169        TCGA-HI-7170        TCGA-HI-7171 
"PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" 
       TCGA-J4-8198        TCGA-J4-8200        TCGA-J4-A67N 
"PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" 
       TCGA-CH-5737        TCGA-CH-5738        TCGA-CH-5739        TCGA-CH-5740 
"PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" 
       TCGA-CH-5741        TCGA-CH-5744        TCGA-CH-5745        TCGA-CH-5746 
  "PCDHAC2 MUTATED" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" 
       TCGA-CH-5748        TCGA-CH-5750        TCGA-CH-5751        TCGA-CH-5752 
"PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" 
       TCGA-CH-5753        TCGA-CH-5754        TCGA-CH-5761        TCGA-CH-5762 
"PCDHAC2 WILD-TYPE"   "PCDHAC2 MUTATED" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" 
       TCGA-CH-5763        TCGA-CH-5764        TCGA-CH-5765        TCGA-CH-5766 
"PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" 
       TCGA-CH-5767        TCGA-CH-5768        TCGA-CH-5771        TCGA-CH-5772 
"PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" 
       TCGA-CH-5788        TCGA-CH-5789        TCGA-CH-5790        TCGA-CH-5791 
"PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" 
       TCGA-CH-5792        TCGA-CH-5794        TCGA-EJ-5494        TCGA-EJ-5495 
"PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" 
       TCGA-EJ-5496        TCGA-EJ-5497        TCGA-EJ-5498        TCGA-EJ-5499 
"PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" 
       TCGA-EJ-5501        TCGA-EJ-5502        TCGA-EJ-5503        TCGA-EJ-5504 
"PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE"   "PCDHAC2 MUTATED"   "PCDHAC2 MUTATED" 
       TCGA-EJ-5505        TCGA-EJ-5506        TCGA-EJ-5507        TCGA-EJ-5508 
"PCDHAC2 WILD-TYPE"   "PCDHAC2 MUTATED" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" 
       TCGA-EJ-5509        TCGA-EJ-5510        TCGA-EJ-5511        TCGA-EJ-5512 
"PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" 
       TCGA-EJ-5514        TCGA-EJ-5515        TCGA-EJ-5516        TCGA-EJ-5517 
  "PCDHAC2 MUTATED" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" 
       TCGA-EJ-5518        TCGA-EJ-5519        TCGA-EJ-5521        TCGA-EJ-5522 
"PCDHAC2 WILD-TYPE"   "PCDHAC2 MUTATED" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" 
       TCGA-EJ-5524        TCGA-EJ-5525        TCGA-EJ-5526        TCGA-EJ-5527 
"PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" 
       TCGA-EJ-5530        TCGA-EJ-5532        TCGA-EJ-5542        TCGA-EJ-7115 
"PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE"   "PCDHAC2 MUTATED" "PCDHAC2 WILD-TYPE" 
       TCGA-EJ-7123        TCGA-EJ-7125        TCGA-EJ-7314        TCGA-EJ-7315 
"PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE"   "PCDHAC2 MUTATED" "PCDHAC2 WILD-TYPE" 
       TCGA-EJ-7317        TCGA-EJ-7321        TCGA-EJ-7327        TCGA-EJ-7328 
"PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" 
       TCGA-EJ-7330        TCGA-EJ-7331        TCGA-EJ-7781        TCGA-EJ-7783 
"PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE"   "PCDHAC2 MUTATED"   "PCDHAC2 MUTATED" 
       TCGA-EJ-7784        TCGA-EJ-7785        TCGA-EJ-7786        TCGA-EJ-7788 
"PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" 
       TCGA-EJ-7789        TCGA-EJ-7791        TCGA-EJ-7792        TCGA-EJ-7793 
"PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" 
       TCGA-EJ-7794        TCGA-EJ-7797        TCGA-EJ-8474        TCGA-EJ-A46B 
"PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" 
       TCGA-EJ-A46D        TCGA-EJ-A46E        TCGA-EJ-A46F        TCGA-EJ-A46H 
"PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" 
       TCGA-EJ-A46I        TCGA-FC-7708        TCGA-FC-7961        TCGA-FC-A5OB 
"PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE"   "PCDHAC2 MUTATED" "PCDHAC2 WILD-TYPE" 
       TCGA-FC-A66V        TCGA-FC-A6HD        TCGA-G9-6329        TCGA-G9-6332 
"PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" 
       TCGA-G9-6333        TCGA-G9-6336        TCGA-G9-6338        TCGA-G9-6342 
  "PCDHAC2 MUTATED" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" 
       TCGA-G9-6343        TCGA-G9-6348        TCGA-G9-6351        TCGA-G9-6353 
"PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE"   "PCDHAC2 MUTATED"   "PCDHAC2 MUTATED" 
       TCGA-G9-6356        TCGA-G9-6361        TCGA-G9-6362        TCGA-G9-6363 
"PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" 
       TCGA-G9-6364        TCGA-G9-6365        TCGA-G9-6366        TCGA-G9-6367 
"PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" 
       TCGA-G9-6369        TCGA-G9-6370        TCGA-G9-6371        TCGA-G9-6377 
"PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" 
       TCGA-G9-6378        TCGA-G9-6384        TCGA-G9-6385        TCGA-G9-6494 
"PCDHAC2 WILD-TYPE"   "PCDHAC2 MUTATED" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" 
       TCGA-G9-6496        TCGA-G9-6499        TCGA-G9-7510        TCGA-G9-7519 
"PCDHAC2 WILD-TYPE"   "PCDHAC2 MUTATED" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" 
       TCGA-G9-7521        TCGA-G9-7522        TCGA-G9-7523        TCGA-G9-7525 
"PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" 
       TCGA-H9-7775        TCGA-HC-7075        TCGA-HC-7077        TCGA-HC-7078 
"PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" 
       TCGA-HC-7079        TCGA-HC-7080        TCGA-HC-7209        TCGA-HC-7211 
"PCDHAC2 WILD-TYPE"   "PCDHAC2 MUTATED" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" 
       TCGA-HC-7212        TCGA-HC-7213        TCGA-HC-7230        TCGA-HC-7231 
"PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" 
       TCGA-HC-7233        TCGA-HC-7736        TCGA-HC-7737        TCGA-HC-7740 
"PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE"   "PCDHAC2 MUTATED" "PCDHAC2 WILD-TYPE" 
       TCGA-HC-7742        TCGA-HC-7744        TCGA-HC-7747        TCGA-HC-7748 
"PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" 
       TCGA-HC-7749        TCGA-HC-7750        TCGA-HC-7752        TCGA-HC-7817 
"PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" 
       TCGA-HC-7818        TCGA-HC-7821        TCGA-HC-8216        TCGA-HC-8265 
"PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" 
       TCGA-HC-A4ZV        TCGA-HC-A6AL        TCGA-HC-A6AS        TCGA-HC-A6HX 
"PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" 
       TCGA-HI-7168        TCGA-HI-7169        TCGA-HI-7170        TCGA-HI-7171 
"PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" 
       TCGA-J4-8198        TCGA-J4-8200        TCGA-J4-A67N 
"PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" "PCDHAC2 WILD-TYPE" 
[1] "hr=" "1"  
D4V2, continuous
                   vv
clus                T2 T3 T4
  PCDHAC2 MUTATED    6 13  0
  PCDHAC2 WILD-TYPE 67 78  5
D4V3, multiclass
    clus
vv   PCDHAC2 MUTATED PCDHAC2 WILD-TYPE
  T2               6                67
  T3              13                78
  T4               0                 5
D4V4, binary
                   cls
clus                  0   1
  PCDHAC2 MUTATED    11   6
  PCDHAC2 WILD-TYPE 125  10
[1] "tbl2"
                   cls
clus                [,1] [,2]
  PCDHAC2 MUTATED     11    6
  PCDHAC2 WILD-TYPE  125   10
   clus
vv  PCDHAC2 MUTATED PCDHAC2 WILD-TYPE
  0              11               125
  1               6                10
                   vv
clus                 R0  R1  RX
  PCDHAC2 MUTATED    12   5   1
  PCDHAC2 WILD-TYPE 115  28   1
D4V5, multiclass
    clus
vv   PCDHAC2 MUTATED PCDHAC2 WILD-TYPE
  R0              12               115
  R1               5                28
  RX               1                 1
D4V6, continuous
D4V7, continuous
D4V8, continuous
D4V9, continuous
D4V10, continuous
D4V11, continuous
D4V12, continuous
D4V13, continuous
D4V14, continuous

Clustering(5) Variable = FOXA1 MUTATION ANALYSIS
D5V1, survival
                 sevent
clus2               0   1
  FOXA1 MUTATED     6   0
  FOXA1 WILD-TYPE 164   1
  FOXA1 MUTATED FOXA1 WILD-TYPE 
              6             165 
  FOXA1 MUTATED FOXA1 WILD-TYPE 
              0               1 
$`FOXA1 MUTATED`
TCGA-CH-5737 TCGA-EJ-5494 TCGA-EJ-7330 TCGA-EJ-7789 TCGA-G9-6351 TCGA-HC-8265 
        2.99        27.12         6.28        18.15        46.13        15.98 

$`FOXA1 WILD-TYPE`
TCGA-CH-5738 TCGA-CH-5739 TCGA-CH-5740 TCGA-CH-5741 TCGA-CH-5744 TCGA-CH-5745 
        6.97        22.06         1.02        12.99         1.97         2.99 
TCGA-CH-5746 TCGA-CH-5748 TCGA-CH-5750 TCGA-CH-5751 TCGA-CH-5752 TCGA-CH-5753 
       24.03         1.02        12.99        35.01        30.97         1.02 
TCGA-CH-5754 TCGA-CH-5761 TCGA-CH-5762 TCGA-CH-5763 TCGA-CH-5764 TCGA-CH-5765 
        2.04         0.92        44.02        12.00         1.02        23.01 
TCGA-CH-5766 TCGA-CH-5767 TCGA-CH-5768 TCGA-CH-5771 TCGA-CH-5772 TCGA-CH-5788 
        1.02        15.06        24.03        12.99        15.95        26.96 
TCGA-CH-5789 TCGA-CH-5790 TCGA-CH-5791 TCGA-CH-5792 TCGA-CH-5794 TCGA-EJ-5495 
        9.96        32.02        33.01         2.99        28.96        33.07 
TCGA-EJ-5496 TCGA-EJ-5497 TCGA-EJ-5498 TCGA-EJ-5499 TCGA-EJ-5501 TCGA-EJ-5502 
       19.53        13.02        29.75        17.49        30.77         8.02 
TCGA-EJ-5503 TCGA-EJ-5504 TCGA-EJ-5505 TCGA-EJ-5506 TCGA-EJ-5507 TCGA-EJ-5508 
       23.54        28.93        30.28        27.19        23.90        38.93 
TCGA-EJ-5509 TCGA-EJ-5510 TCGA-EJ-5511 TCGA-EJ-5512 TCGA-EJ-5514 TCGA-EJ-5515 
       36.03        36.66        32.02        38.53        36.23        40.77 
TCGA-EJ-5516 TCGA-EJ-5517 TCGA-EJ-5518 TCGA-EJ-5519 TCGA-EJ-5521 TCGA-EJ-5522 
       46.55        47.80        52.27        43.89        51.88        48.07 
TCGA-EJ-5524 TCGA-EJ-5525 TCGA-EJ-5526 TCGA-EJ-5527 TCGA-EJ-5530 TCGA-EJ-5532 
       43.07        36.66        38.76        39.75        41.82        48.03 
TCGA-EJ-5542 TCGA-EJ-7115 TCGA-EJ-7123 TCGA-EJ-7125 TCGA-EJ-7314 TCGA-EJ-7315 
       29.06        26.99        48.99        61.15         9.70         9.50 
TCGA-EJ-7317 TCGA-EJ-7321 TCGA-EJ-7327 TCGA-EJ-7328 TCGA-EJ-7331 TCGA-EJ-7781 
        9.37         7.66         5.75         5.59         0.30         5.56 
TCGA-EJ-7783 TCGA-EJ-7784 TCGA-EJ-7785 TCGA-EJ-7786 TCGA-EJ-7788 TCGA-EJ-7791 
        4.31         5.49         8.48        14.53         1.71        19.59 
TCGA-EJ-7792 TCGA-EJ-7793 TCGA-EJ-7794 TCGA-EJ-7797 TCGA-EJ-8474 TCGA-EJ-A46B 
       17.29         1.41        23.01        12.13        10.32         5.33 
TCGA-EJ-A46D TCGA-EJ-A46E TCGA-EJ-A46F TCGA-EJ-A46H TCGA-EJ-A46I TCGA-FC-7708 
        4.21        17.06         9.83         7.50        22.09         1.05 
TCGA-FC-7961 TCGA-FC-A5OB TCGA-FC-A66V TCGA-FC-A6HD TCGA-G9-6329 TCGA-G9-6332 
        2.30         8.98         4.01         1.78        41.62        65.92 
TCGA-G9-6333 TCGA-G9-6336 TCGA-G9-6338 TCGA-G9-6342 TCGA-G9-6343 TCGA-G9-6348 
       65.95        65.98        65.98        55.76        18.21        49.81 
TCGA-G9-6353 TCGA-G9-6356 TCGA-G9-6361 TCGA-G9-6362 TCGA-G9-6363 TCGA-G9-6364 
       50.66        47.15        46.52        47.44        45.30        39.39 
TCGA-G9-6365 TCGA-G9-6366 TCGA-G9-6367 TCGA-G9-6369 TCGA-G9-6370 TCGA-G9-6371 
       44.81         3.32        40.18        39.95        38.01        40.31 
TCGA-G9-6377 TCGA-G9-6378 TCGA-G9-6384 TCGA-G9-6385 TCGA-G9-6494 TCGA-G9-6496 
       31.50        37.97        25.15        27.29        58.22        56.75 
TCGA-G9-6499 TCGA-G9-7510 TCGA-G9-7519 TCGA-G9-7521 TCGA-G9-7522 TCGA-G9-7523 
       50.73        38.96        27.91        15.98        21.30        28.14 
TCGA-G9-7525 TCGA-H9-7775 TCGA-HC-7075 TCGA-HC-7077 TCGA-HC-7078 TCGA-HC-7079 
       16.83         6.05         2.01        65.98         5.33         2.93 
TCGA-HC-7080 TCGA-HC-7209 TCGA-HC-7211 TCGA-HC-7212 TCGA-HC-7213 TCGA-HC-7230 
        2.01         1.02         0.99        28.96         1.97         1.68 
TCGA-HC-7231 TCGA-HC-7233 TCGA-HC-7736 TCGA-HC-7737 TCGA-HC-7740 TCGA-HC-7742 
        2.37         1.71         0.99         2.07         1.74         1.48 
TCGA-HC-7744 TCGA-HC-7747 TCGA-HC-7748 TCGA-HC-7749 TCGA-HC-7750 TCGA-HC-7752 
        1.68         1.87        26.04         2.01         1.12         3.22 
TCGA-HC-7817 TCGA-HC-7818 TCGA-HC-7821 TCGA-HC-8216 TCGA-HC-A4ZV TCGA-HC-A6AL 
        1.05         1.48         1.84        22.42         0.76         2.20 
TCGA-HC-A6AS TCGA-HC-A6HX TCGA-HI-7168 TCGA-HI-7169 TCGA-HI-7170 TCGA-HI-7171 
        1.45         1.22        65.92        64.08        62.43        66.02 
TCGA-J4-8198 TCGA-J4-8200 TCGA-J4-A67N 
        3.22        12.30        16.50 

  FOXA1 MUTATED FOXA1 WILD-TYPE 
           2.99            0.30 
  FOXA1 MUTATED FOXA1 WILD-TYPE 
          46.13           66.02 
  FOXA1 MUTATED FOXA1 WILD-TYPE 
         17.065          19.530 
[1] "3.0 - 46.1 (17.1)" "0.3 - 66.0 (19.5)"
     TCGA-CH-5737      TCGA-CH-5738      TCGA-CH-5739      TCGA-CH-5740 
  "FOXA1 MUTATED" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-CH-5741      TCGA-CH-5744      TCGA-CH-5745      TCGA-CH-5746 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-CH-5748      TCGA-CH-5750      TCGA-CH-5751      TCGA-CH-5752 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-CH-5753      TCGA-CH-5754      TCGA-CH-5761      TCGA-CH-5762 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-CH-5763      TCGA-CH-5764      TCGA-CH-5765      TCGA-CH-5766 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-CH-5767      TCGA-CH-5768      TCGA-CH-5771      TCGA-CH-5772 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-CH-5788      TCGA-CH-5789      TCGA-CH-5790      TCGA-CH-5791 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-CH-5792      TCGA-CH-5794      TCGA-EJ-5494      TCGA-EJ-5495 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE"   "FOXA1 MUTATED" "FOXA1 WILD-TYPE" 
     TCGA-EJ-5496      TCGA-EJ-5497      TCGA-EJ-5498      TCGA-EJ-5499 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-EJ-5501      TCGA-EJ-5502      TCGA-EJ-5503      TCGA-EJ-5504 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-EJ-5505      TCGA-EJ-5506      TCGA-EJ-5507      TCGA-EJ-5508 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-EJ-5509      TCGA-EJ-5510      TCGA-EJ-5511      TCGA-EJ-5512 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-EJ-5514      TCGA-EJ-5515      TCGA-EJ-5516      TCGA-EJ-5517 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-EJ-5518      TCGA-EJ-5519      TCGA-EJ-5521      TCGA-EJ-5522 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-EJ-5524      TCGA-EJ-5525      TCGA-EJ-5526      TCGA-EJ-5527 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-EJ-5530      TCGA-EJ-5532      TCGA-EJ-5542      TCGA-EJ-7115 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-EJ-7123      TCGA-EJ-7125      TCGA-EJ-7314      TCGA-EJ-7315 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-EJ-7317      TCGA-EJ-7321      TCGA-EJ-7327      TCGA-EJ-7328 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-EJ-7330      TCGA-EJ-7331      TCGA-EJ-7781      TCGA-EJ-7783 
  "FOXA1 MUTATED" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-EJ-7784      TCGA-EJ-7785      TCGA-EJ-7786      TCGA-EJ-7788 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-EJ-7789      TCGA-EJ-7791      TCGA-EJ-7792      TCGA-EJ-7793 
  "FOXA1 MUTATED" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-EJ-7794      TCGA-EJ-7797      TCGA-EJ-8474      TCGA-EJ-A46B 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-EJ-A46D      TCGA-EJ-A46E      TCGA-EJ-A46F      TCGA-EJ-A46H 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-EJ-A46I      TCGA-FC-7708      TCGA-FC-7961      TCGA-FC-A5OB 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-FC-A66V      TCGA-FC-A6HD      TCGA-G9-6329      TCGA-G9-6332 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-G9-6333      TCGA-G9-6336      TCGA-G9-6338      TCGA-G9-6342 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-G9-6343      TCGA-G9-6348      TCGA-G9-6351      TCGA-G9-6353 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE"   "FOXA1 MUTATED" "FOXA1 WILD-TYPE" 
     TCGA-G9-6356      TCGA-G9-6361      TCGA-G9-6362      TCGA-G9-6363 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-G9-6364      TCGA-G9-6365      TCGA-G9-6366      TCGA-G9-6367 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-G9-6369      TCGA-G9-6370      TCGA-G9-6371      TCGA-G9-6377 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-G9-6378      TCGA-G9-6384      TCGA-G9-6385      TCGA-G9-6494 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-G9-6496      TCGA-G9-6499      TCGA-G9-7510      TCGA-G9-7519 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-G9-7521      TCGA-G9-7522      TCGA-G9-7523      TCGA-G9-7525 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-H9-7775      TCGA-HC-7075      TCGA-HC-7077      TCGA-HC-7078 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-HC-7079      TCGA-HC-7080      TCGA-HC-7209      TCGA-HC-7211 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-HC-7212      TCGA-HC-7213      TCGA-HC-7230      TCGA-HC-7231 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-HC-7233      TCGA-HC-7736      TCGA-HC-7737      TCGA-HC-7740 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-HC-7742      TCGA-HC-7744      TCGA-HC-7747      TCGA-HC-7748 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-HC-7749      TCGA-HC-7750      TCGA-HC-7752      TCGA-HC-7817 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-HC-7818      TCGA-HC-7821      TCGA-HC-8216      TCGA-HC-8265 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE"   "FOXA1 MUTATED" 
     TCGA-HC-A4ZV      TCGA-HC-A6AL      TCGA-HC-A6AS      TCGA-HC-A6HX 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-HI-7168      TCGA-HI-7169      TCGA-HI-7170      TCGA-HI-7171 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-J4-8198      TCGA-J4-8200      TCGA-J4-A67N 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-CH-5737      TCGA-CH-5738      TCGA-CH-5739      TCGA-CH-5740 
  "FOXA1 MUTATED" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-CH-5741      TCGA-CH-5744      TCGA-CH-5745      TCGA-CH-5746 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-CH-5748      TCGA-CH-5750      TCGA-CH-5751      TCGA-CH-5752 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-CH-5753      TCGA-CH-5754      TCGA-CH-5761      TCGA-CH-5762 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-CH-5763      TCGA-CH-5764      TCGA-CH-5765      TCGA-CH-5766 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-CH-5767      TCGA-CH-5768      TCGA-CH-5771      TCGA-CH-5772 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-CH-5788      TCGA-CH-5789      TCGA-CH-5790      TCGA-CH-5791 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-CH-5792      TCGA-CH-5794      TCGA-EJ-5494      TCGA-EJ-5495 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE"   "FOXA1 MUTATED" "FOXA1 WILD-TYPE" 
     TCGA-EJ-5496      TCGA-EJ-5497      TCGA-EJ-5498      TCGA-EJ-5499 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-EJ-5501      TCGA-EJ-5502      TCGA-EJ-5503      TCGA-EJ-5504 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-EJ-5505      TCGA-EJ-5506      TCGA-EJ-5507      TCGA-EJ-5508 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-EJ-5509      TCGA-EJ-5510      TCGA-EJ-5511      TCGA-EJ-5512 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-EJ-5514      TCGA-EJ-5515      TCGA-EJ-5516      TCGA-EJ-5517 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-EJ-5518      TCGA-EJ-5519      TCGA-EJ-5521      TCGA-EJ-5522 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-EJ-5524      TCGA-EJ-5525      TCGA-EJ-5526      TCGA-EJ-5527 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-EJ-5530      TCGA-EJ-5532      TCGA-EJ-5542      TCGA-EJ-7115 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-EJ-7123      TCGA-EJ-7125      TCGA-EJ-7314      TCGA-EJ-7315 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-EJ-7317      TCGA-EJ-7321      TCGA-EJ-7327      TCGA-EJ-7328 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-EJ-7330      TCGA-EJ-7331      TCGA-EJ-7781      TCGA-EJ-7783 
  "FOXA1 MUTATED" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-EJ-7784      TCGA-EJ-7785      TCGA-EJ-7786      TCGA-EJ-7788 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-EJ-7789      TCGA-EJ-7791      TCGA-EJ-7792      TCGA-EJ-7793 
  "FOXA1 MUTATED" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-EJ-7794      TCGA-EJ-7797      TCGA-EJ-8474      TCGA-EJ-A46B 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-EJ-A46D      TCGA-EJ-A46E      TCGA-EJ-A46F      TCGA-EJ-A46H 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-EJ-A46I      TCGA-FC-7708      TCGA-FC-7961      TCGA-FC-A5OB 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-FC-A66V      TCGA-FC-A6HD      TCGA-G9-6329      TCGA-G9-6332 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-G9-6333      TCGA-G9-6336      TCGA-G9-6338      TCGA-G9-6342 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-G9-6343      TCGA-G9-6348      TCGA-G9-6351      TCGA-G9-6353 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE"   "FOXA1 MUTATED" "FOXA1 WILD-TYPE" 
     TCGA-G9-6356      TCGA-G9-6361      TCGA-G9-6362      TCGA-G9-6363 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-G9-6364      TCGA-G9-6365      TCGA-G9-6366      TCGA-G9-6367 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-G9-6369      TCGA-G9-6370      TCGA-G9-6371      TCGA-G9-6377 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-G9-6378      TCGA-G9-6384      TCGA-G9-6385      TCGA-G9-6494 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-G9-6496      TCGA-G9-6499      TCGA-G9-7510      TCGA-G9-7519 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-G9-7521      TCGA-G9-7522      TCGA-G9-7523      TCGA-G9-7525 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-H9-7775      TCGA-HC-7075      TCGA-HC-7077      TCGA-HC-7078 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-HC-7079      TCGA-HC-7080      TCGA-HC-7209      TCGA-HC-7211 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-HC-7212      TCGA-HC-7213      TCGA-HC-7230      TCGA-HC-7231 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-HC-7233      TCGA-HC-7736      TCGA-HC-7737      TCGA-HC-7740 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-HC-7742      TCGA-HC-7744      TCGA-HC-7747      TCGA-HC-7748 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-HC-7749      TCGA-HC-7750      TCGA-HC-7752      TCGA-HC-7817 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-HC-7818      TCGA-HC-7821      TCGA-HC-8216      TCGA-HC-8265 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE"   "FOXA1 MUTATED" 
     TCGA-HC-A4ZV      TCGA-HC-A6AL      TCGA-HC-A6AS      TCGA-HC-A6HX 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-HI-7168      TCGA-HI-7169      TCGA-HI-7170      TCGA-HI-7171 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-J4-8198      TCGA-J4-8200      TCGA-J4-A67N 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-CH-5737      TCGA-CH-5738      TCGA-CH-5739      TCGA-CH-5740 
  "FOXA1 MUTATED" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-CH-5741      TCGA-CH-5744      TCGA-CH-5745      TCGA-CH-5746 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-CH-5748      TCGA-CH-5750      TCGA-CH-5751      TCGA-CH-5752 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-CH-5753      TCGA-CH-5754      TCGA-CH-5761      TCGA-CH-5762 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-CH-5763      TCGA-CH-5764      TCGA-CH-5765      TCGA-CH-5766 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-CH-5767      TCGA-CH-5768      TCGA-CH-5771      TCGA-CH-5772 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-CH-5788      TCGA-CH-5789      TCGA-CH-5790      TCGA-CH-5791 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-CH-5792      TCGA-CH-5794      TCGA-EJ-5494      TCGA-EJ-5495 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE"   "FOXA1 MUTATED" "FOXA1 WILD-TYPE" 
     TCGA-EJ-5496      TCGA-EJ-5497      TCGA-EJ-5498      TCGA-EJ-5499 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-EJ-5501      TCGA-EJ-5502      TCGA-EJ-5503      TCGA-EJ-5504 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-EJ-5505      TCGA-EJ-5506      TCGA-EJ-5507      TCGA-EJ-5508 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-EJ-5509      TCGA-EJ-5510      TCGA-EJ-5511      TCGA-EJ-5512 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-EJ-5514      TCGA-EJ-5515      TCGA-EJ-5516      TCGA-EJ-5517 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-EJ-5518      TCGA-EJ-5519      TCGA-EJ-5521      TCGA-EJ-5522 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-EJ-5524      TCGA-EJ-5525      TCGA-EJ-5526      TCGA-EJ-5527 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-EJ-5530      TCGA-EJ-5532      TCGA-EJ-5542      TCGA-EJ-7115 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-EJ-7123      TCGA-EJ-7125      TCGA-EJ-7314      TCGA-EJ-7315 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-EJ-7317      TCGA-EJ-7321      TCGA-EJ-7327      TCGA-EJ-7328 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-EJ-7330      TCGA-EJ-7331      TCGA-EJ-7781      TCGA-EJ-7783 
  "FOXA1 MUTATED" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-EJ-7784      TCGA-EJ-7785      TCGA-EJ-7786      TCGA-EJ-7788 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-EJ-7789      TCGA-EJ-7791      TCGA-EJ-7792      TCGA-EJ-7793 
  "FOXA1 MUTATED" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-EJ-7794      TCGA-EJ-7797      TCGA-EJ-8474      TCGA-EJ-A46B 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-EJ-A46D      TCGA-EJ-A46E      TCGA-EJ-A46F      TCGA-EJ-A46H 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-EJ-A46I      TCGA-FC-7708      TCGA-FC-7961      TCGA-FC-A5OB 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-FC-A66V      TCGA-FC-A6HD      TCGA-G9-6329      TCGA-G9-6332 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-G9-6333      TCGA-G9-6336      TCGA-G9-6338      TCGA-G9-6342 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-G9-6343      TCGA-G9-6348      TCGA-G9-6351      TCGA-G9-6353 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE"   "FOXA1 MUTATED" "FOXA1 WILD-TYPE" 
     TCGA-G9-6356      TCGA-G9-6361      TCGA-G9-6362      TCGA-G9-6363 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-G9-6364      TCGA-G9-6365      TCGA-G9-6366      TCGA-G9-6367 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-G9-6369      TCGA-G9-6370      TCGA-G9-6371      TCGA-G9-6377 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-G9-6378      TCGA-G9-6384      TCGA-G9-6385      TCGA-G9-6494 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-G9-6496      TCGA-G9-6499      TCGA-G9-7510      TCGA-G9-7519 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-G9-7521      TCGA-G9-7522      TCGA-G9-7523      TCGA-G9-7525 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-H9-7775      TCGA-HC-7075      TCGA-HC-7077      TCGA-HC-7078 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-HC-7079      TCGA-HC-7080      TCGA-HC-7209      TCGA-HC-7211 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-HC-7212      TCGA-HC-7213      TCGA-HC-7230      TCGA-HC-7231 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-HC-7233      TCGA-HC-7736      TCGA-HC-7737      TCGA-HC-7740 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-HC-7742      TCGA-HC-7744      TCGA-HC-7747      TCGA-HC-7748 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-HC-7749      TCGA-HC-7750      TCGA-HC-7752      TCGA-HC-7817 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-HC-7818      TCGA-HC-7821      TCGA-HC-8216      TCGA-HC-8265 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE"   "FOXA1 MUTATED" 
     TCGA-HC-A4ZV      TCGA-HC-A6AL      TCGA-HC-A6AS      TCGA-HC-A6HX 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-HI-7168      TCGA-HI-7169      TCGA-HI-7170      TCGA-HI-7171 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
     TCGA-J4-8198      TCGA-J4-8200      TCGA-J4-A67N 
"FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" "FOXA1 WILD-TYPE" 
[1] "hr=" "1"  
D5V2, continuous
                 vv
clus              T2 T3 T4
  FOXA1 MUTATED    2  4  0
  FOXA1 WILD-TYPE 71 87  5
D5V3, multiclass
    clus
vv   FOXA1 MUTATED FOXA1 WILD-TYPE
  T2             2              71
  T3             4              87
  T4             0               5
D5V4, binary
                 cls
clus                0   1
  FOXA1 MUTATED     5   0
  FOXA1 WILD-TYPE 131  16
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FOXA1 MUTATED      5    0
  FOXA1 WILD-TYPE  131   16
   clus
vv  FOXA1 MUTATED FOXA1 WILD-TYPE
  0             5             131
  1             0              16
                 vv
clus               R0  R1  RX
  FOXA1 MUTATED     4   2   0
  FOXA1 WILD-TYPE 123  31   2
D5V5, multiclass
    clus
vv   FOXA1 MUTATED FOXA1 WILD-TYPE
  R0             4             123
  R1             2              31
  RX             0               2
D5V6, continuous
D5V7, continuous
D5V8, continuous
D5V9, continuous
D5V10, continuous
D5V11, continuous
D5V12, continuous
D5V13, continuous
D5V14, continuous

Clustering(6) Variable = TP53 MUTATION ANALYSIS
D6V1, survival
                sevent
clus2              0   1
  TP53 MUTATED    14   1
  TP53 WILD-TYPE 156   0
  TP53 MUTATED TP53 WILD-TYPE 
            15            156 
  TP53 MUTATED TP53 WILD-TYPE 
             1              0 
$`TP53 MUTATED`
TCGA-CH-5761 TCGA-EJ-5507 TCGA-EJ-5514 TCGA-EJ-5521 TCGA-EJ-5525 TCGA-EJ-7315 
        0.92        23.90        36.23        51.88        36.66         9.50 
TCGA-EJ-7781 TCGA-G9-6499 TCGA-G9-7510 TCGA-G9-7521 TCGA-HC-7213 TCGA-HC-7230 
        5.56        50.73        38.96        15.98         1.97         1.68 
TCGA-HC-7742 TCGA-HC-8216 TCGA-HI-7171 
        1.48        22.42        66.02 

$`TP53 WILD-TYPE`
TCGA-CH-5737 TCGA-CH-5738 TCGA-CH-5739 TCGA-CH-5740 TCGA-CH-5741 TCGA-CH-5744 
        2.99         6.97        22.06         1.02        12.99         1.97 
TCGA-CH-5745 TCGA-CH-5746 TCGA-CH-5748 TCGA-CH-5750 TCGA-CH-5751 TCGA-CH-5752 
        2.99        24.03         1.02        12.99        35.01        30.97 
TCGA-CH-5753 TCGA-CH-5754 TCGA-CH-5762 TCGA-CH-5763 TCGA-CH-5764 TCGA-CH-5765 
        1.02         2.04        44.02        12.00         1.02        23.01 
TCGA-CH-5766 TCGA-CH-5767 TCGA-CH-5768 TCGA-CH-5771 TCGA-CH-5772 TCGA-CH-5788 
        1.02        15.06        24.03        12.99        15.95        26.96 
TCGA-CH-5789 TCGA-CH-5790 TCGA-CH-5791 TCGA-CH-5792 TCGA-CH-5794 TCGA-EJ-5494 
        9.96        32.02        33.01         2.99        28.96        27.12 
TCGA-EJ-5495 TCGA-EJ-5496 TCGA-EJ-5497 TCGA-EJ-5498 TCGA-EJ-5499 TCGA-EJ-5501 
       33.07        19.53        13.02        29.75        17.49        30.77 
TCGA-EJ-5502 TCGA-EJ-5503 TCGA-EJ-5504 TCGA-EJ-5505 TCGA-EJ-5506 TCGA-EJ-5508 
        8.02        23.54        28.93        30.28        27.19        38.93 
TCGA-EJ-5509 TCGA-EJ-5510 TCGA-EJ-5511 TCGA-EJ-5512 TCGA-EJ-5515 TCGA-EJ-5516 
       36.03        36.66        32.02        38.53        40.77        46.55 
TCGA-EJ-5517 TCGA-EJ-5518 TCGA-EJ-5519 TCGA-EJ-5522 TCGA-EJ-5524 TCGA-EJ-5526 
       47.80        52.27        43.89        48.07        43.07        38.76 
TCGA-EJ-5527 TCGA-EJ-5530 TCGA-EJ-5532 TCGA-EJ-5542 TCGA-EJ-7115 TCGA-EJ-7123 
       39.75        41.82        48.03        29.06        26.99        48.99 
TCGA-EJ-7125 TCGA-EJ-7314 TCGA-EJ-7317 TCGA-EJ-7321 TCGA-EJ-7327 TCGA-EJ-7328 
       61.15         9.70         9.37         7.66         5.75         5.59 
TCGA-EJ-7330 TCGA-EJ-7331 TCGA-EJ-7783 TCGA-EJ-7784 TCGA-EJ-7785 TCGA-EJ-7786 
        6.28         0.30         4.31         5.49         8.48        14.53 
TCGA-EJ-7788 TCGA-EJ-7789 TCGA-EJ-7791 TCGA-EJ-7792 TCGA-EJ-7793 TCGA-EJ-7794 
        1.71        18.15        19.59        17.29         1.41        23.01 
TCGA-EJ-7797 TCGA-EJ-8474 TCGA-EJ-A46B TCGA-EJ-A46D TCGA-EJ-A46E TCGA-EJ-A46F 
       12.13        10.32         5.33         4.21        17.06         9.83 
TCGA-EJ-A46H TCGA-EJ-A46I TCGA-FC-7708 TCGA-FC-7961 TCGA-FC-A5OB TCGA-FC-A66V 
        7.50        22.09         1.05         2.30         8.98         4.01 
TCGA-FC-A6HD TCGA-G9-6329 TCGA-G9-6332 TCGA-G9-6333 TCGA-G9-6336 TCGA-G9-6338 
        1.78        41.62        65.92        65.95        65.98        65.98 
TCGA-G9-6342 TCGA-G9-6343 TCGA-G9-6348 TCGA-G9-6351 TCGA-G9-6353 TCGA-G9-6356 
       55.76        18.21        49.81        46.13        50.66        47.15 
TCGA-G9-6361 TCGA-G9-6362 TCGA-G9-6363 TCGA-G9-6364 TCGA-G9-6365 TCGA-G9-6366 
       46.52        47.44        45.30        39.39        44.81         3.32 
TCGA-G9-6367 TCGA-G9-6369 TCGA-G9-6370 TCGA-G9-6371 TCGA-G9-6377 TCGA-G9-6378 
       40.18        39.95        38.01        40.31        31.50        37.97 
TCGA-G9-6384 TCGA-G9-6385 TCGA-G9-6494 TCGA-G9-6496 TCGA-G9-7519 TCGA-G9-7522 
       25.15        27.29        58.22        56.75        27.91        21.30 
TCGA-G9-7523 TCGA-G9-7525 TCGA-H9-7775 TCGA-HC-7075 TCGA-HC-7077 TCGA-HC-7078 
       28.14        16.83         6.05         2.01        65.98         5.33 
TCGA-HC-7079 TCGA-HC-7080 TCGA-HC-7209 TCGA-HC-7211 TCGA-HC-7212 TCGA-HC-7231 
        2.93         2.01         1.02         0.99        28.96         2.37 
TCGA-HC-7233 TCGA-HC-7736 TCGA-HC-7737 TCGA-HC-7740 TCGA-HC-7744 TCGA-HC-7747 
        1.71         0.99         2.07         1.74         1.68         1.87 
TCGA-HC-7748 TCGA-HC-7749 TCGA-HC-7750 TCGA-HC-7752 TCGA-HC-7817 TCGA-HC-7818 
       26.04         2.01         1.12         3.22         1.05         1.48 
TCGA-HC-7821 TCGA-HC-8265 TCGA-HC-A4ZV TCGA-HC-A6AL TCGA-HC-A6AS TCGA-HC-A6HX 
        1.84        15.98         0.76         2.20         1.45         1.22 
TCGA-HI-7168 TCGA-HI-7169 TCGA-HI-7170 TCGA-J4-8198 TCGA-J4-8200 TCGA-J4-A67N 
       65.92        64.08        62.43         3.22        12.30        16.50 

  TP53 MUTATED TP53 WILD-TYPE 
          0.92           0.30 
  TP53 MUTATED TP53 WILD-TYPE 
         66.02          65.98 
  TP53 MUTATED TP53 WILD-TYPE 
         22.42          18.18 
[1] "0.9 - 66.0 (22.4)" "0.3 - 66.0 (18.2)"
    TCGA-CH-5737     TCGA-CH-5738     TCGA-CH-5739     TCGA-CH-5740 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-CH-5741     TCGA-CH-5744     TCGA-CH-5745     TCGA-CH-5746 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-CH-5748     TCGA-CH-5750     TCGA-CH-5751     TCGA-CH-5752 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-CH-5753     TCGA-CH-5754     TCGA-CH-5761     TCGA-CH-5762 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-CH-5763     TCGA-CH-5764     TCGA-CH-5765     TCGA-CH-5766 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-CH-5767     TCGA-CH-5768     TCGA-CH-5771     TCGA-CH-5772 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-CH-5788     TCGA-CH-5789     TCGA-CH-5790     TCGA-CH-5791 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-CH-5792     TCGA-CH-5794     TCGA-EJ-5494     TCGA-EJ-5495 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-EJ-5496     TCGA-EJ-5497     TCGA-EJ-5498     TCGA-EJ-5499 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-EJ-5501     TCGA-EJ-5502     TCGA-EJ-5503     TCGA-EJ-5504 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-EJ-5505     TCGA-EJ-5506     TCGA-EJ-5507     TCGA-EJ-5508 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-EJ-5509     TCGA-EJ-5510     TCGA-EJ-5511     TCGA-EJ-5512 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-EJ-5514     TCGA-EJ-5515     TCGA-EJ-5516     TCGA-EJ-5517 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-EJ-5518     TCGA-EJ-5519     TCGA-EJ-5521     TCGA-EJ-5522 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-EJ-5524     TCGA-EJ-5525     TCGA-EJ-5526     TCGA-EJ-5527 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-EJ-5530     TCGA-EJ-5532     TCGA-EJ-5542     TCGA-EJ-7115 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-EJ-7123     TCGA-EJ-7125     TCGA-EJ-7314     TCGA-EJ-7315 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-EJ-7317     TCGA-EJ-7321     TCGA-EJ-7327     TCGA-EJ-7328 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-EJ-7330     TCGA-EJ-7331     TCGA-EJ-7781     TCGA-EJ-7783 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-EJ-7784     TCGA-EJ-7785     TCGA-EJ-7786     TCGA-EJ-7788 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-EJ-7789     TCGA-EJ-7791     TCGA-EJ-7792     TCGA-EJ-7793 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-EJ-7794     TCGA-EJ-7797     TCGA-EJ-8474     TCGA-EJ-A46B 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-EJ-A46D     TCGA-EJ-A46E     TCGA-EJ-A46F     TCGA-EJ-A46H 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-EJ-A46I     TCGA-FC-7708     TCGA-FC-7961     TCGA-FC-A5OB 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-FC-A66V     TCGA-FC-A6HD     TCGA-G9-6329     TCGA-G9-6332 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-G9-6333     TCGA-G9-6336     TCGA-G9-6338     TCGA-G9-6342 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-G9-6343     TCGA-G9-6348     TCGA-G9-6351     TCGA-G9-6353 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-G9-6356     TCGA-G9-6361     TCGA-G9-6362     TCGA-G9-6363 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-G9-6364     TCGA-G9-6365     TCGA-G9-6366     TCGA-G9-6367 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-G9-6369     TCGA-G9-6370     TCGA-G9-6371     TCGA-G9-6377 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-G9-6378     TCGA-G9-6384     TCGA-G9-6385     TCGA-G9-6494 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-G9-6496     TCGA-G9-6499     TCGA-G9-7510     TCGA-G9-7519 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-G9-7521     TCGA-G9-7522     TCGA-G9-7523     TCGA-G9-7525 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-H9-7775     TCGA-HC-7075     TCGA-HC-7077     TCGA-HC-7078 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-HC-7079     TCGA-HC-7080     TCGA-HC-7209     TCGA-HC-7211 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-HC-7212     TCGA-HC-7213     TCGA-HC-7230     TCGA-HC-7231 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-HC-7233     TCGA-HC-7736     TCGA-HC-7737     TCGA-HC-7740 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-HC-7742     TCGA-HC-7744     TCGA-HC-7747     TCGA-HC-7748 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-HC-7749     TCGA-HC-7750     TCGA-HC-7752     TCGA-HC-7817 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-HC-7818     TCGA-HC-7821     TCGA-HC-8216     TCGA-HC-8265 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-HC-A4ZV     TCGA-HC-A6AL     TCGA-HC-A6AS     TCGA-HC-A6HX 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-HI-7168     TCGA-HI-7169     TCGA-HI-7170     TCGA-HI-7171 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-J4-8198     TCGA-J4-8200     TCGA-J4-A67N 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-CH-5737     TCGA-CH-5738     TCGA-CH-5739     TCGA-CH-5740 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-CH-5741     TCGA-CH-5744     TCGA-CH-5745     TCGA-CH-5746 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-CH-5748     TCGA-CH-5750     TCGA-CH-5751     TCGA-CH-5752 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-CH-5753     TCGA-CH-5754     TCGA-CH-5761     TCGA-CH-5762 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-CH-5763     TCGA-CH-5764     TCGA-CH-5765     TCGA-CH-5766 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-CH-5767     TCGA-CH-5768     TCGA-CH-5771     TCGA-CH-5772 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-CH-5788     TCGA-CH-5789     TCGA-CH-5790     TCGA-CH-5791 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-CH-5792     TCGA-CH-5794     TCGA-EJ-5494     TCGA-EJ-5495 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-EJ-5496     TCGA-EJ-5497     TCGA-EJ-5498     TCGA-EJ-5499 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-EJ-5501     TCGA-EJ-5502     TCGA-EJ-5503     TCGA-EJ-5504 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-EJ-5505     TCGA-EJ-5506     TCGA-EJ-5507     TCGA-EJ-5508 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-EJ-5509     TCGA-EJ-5510     TCGA-EJ-5511     TCGA-EJ-5512 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-EJ-5514     TCGA-EJ-5515     TCGA-EJ-5516     TCGA-EJ-5517 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-EJ-5518     TCGA-EJ-5519     TCGA-EJ-5521     TCGA-EJ-5522 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-EJ-5524     TCGA-EJ-5525     TCGA-EJ-5526     TCGA-EJ-5527 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-EJ-5530     TCGA-EJ-5532     TCGA-EJ-5542     TCGA-EJ-7115 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-EJ-7123     TCGA-EJ-7125     TCGA-EJ-7314     TCGA-EJ-7315 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-EJ-7317     TCGA-EJ-7321     TCGA-EJ-7327     TCGA-EJ-7328 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-EJ-7330     TCGA-EJ-7331     TCGA-EJ-7781     TCGA-EJ-7783 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-EJ-7784     TCGA-EJ-7785     TCGA-EJ-7786     TCGA-EJ-7788 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-EJ-7789     TCGA-EJ-7791     TCGA-EJ-7792     TCGA-EJ-7793 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-EJ-7794     TCGA-EJ-7797     TCGA-EJ-8474     TCGA-EJ-A46B 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-EJ-A46D     TCGA-EJ-A46E     TCGA-EJ-A46F     TCGA-EJ-A46H 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-EJ-A46I     TCGA-FC-7708     TCGA-FC-7961     TCGA-FC-A5OB 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-FC-A66V     TCGA-FC-A6HD     TCGA-G9-6329     TCGA-G9-6332 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-G9-6333     TCGA-G9-6336     TCGA-G9-6338     TCGA-G9-6342 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-G9-6343     TCGA-G9-6348     TCGA-G9-6351     TCGA-G9-6353 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-G9-6356     TCGA-G9-6361     TCGA-G9-6362     TCGA-G9-6363 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-G9-6364     TCGA-G9-6365     TCGA-G9-6366     TCGA-G9-6367 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-G9-6369     TCGA-G9-6370     TCGA-G9-6371     TCGA-G9-6377 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-G9-6378     TCGA-G9-6384     TCGA-G9-6385     TCGA-G9-6494 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-G9-6496     TCGA-G9-6499     TCGA-G9-7510     TCGA-G9-7519 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-G9-7521     TCGA-G9-7522     TCGA-G9-7523     TCGA-G9-7525 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-H9-7775     TCGA-HC-7075     TCGA-HC-7077     TCGA-HC-7078 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-HC-7079     TCGA-HC-7080     TCGA-HC-7209     TCGA-HC-7211 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-HC-7212     TCGA-HC-7213     TCGA-HC-7230     TCGA-HC-7231 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-HC-7233     TCGA-HC-7736     TCGA-HC-7737     TCGA-HC-7740 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-HC-7742     TCGA-HC-7744     TCGA-HC-7747     TCGA-HC-7748 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-HC-7749     TCGA-HC-7750     TCGA-HC-7752     TCGA-HC-7817 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-HC-7818     TCGA-HC-7821     TCGA-HC-8216     TCGA-HC-8265 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-HC-A4ZV     TCGA-HC-A6AL     TCGA-HC-A6AS     TCGA-HC-A6HX 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-HI-7168     TCGA-HI-7169     TCGA-HI-7170     TCGA-HI-7171 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-J4-8198     TCGA-J4-8200     TCGA-J4-A67N 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-CH-5737     TCGA-CH-5738     TCGA-CH-5739     TCGA-CH-5740 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-CH-5741     TCGA-CH-5744     TCGA-CH-5745     TCGA-CH-5746 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-CH-5748     TCGA-CH-5750     TCGA-CH-5751     TCGA-CH-5752 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-CH-5753     TCGA-CH-5754     TCGA-CH-5761     TCGA-CH-5762 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-CH-5763     TCGA-CH-5764     TCGA-CH-5765     TCGA-CH-5766 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-CH-5767     TCGA-CH-5768     TCGA-CH-5771     TCGA-CH-5772 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-CH-5788     TCGA-CH-5789     TCGA-CH-5790     TCGA-CH-5791 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-CH-5792     TCGA-CH-5794     TCGA-EJ-5494     TCGA-EJ-5495 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-EJ-5496     TCGA-EJ-5497     TCGA-EJ-5498     TCGA-EJ-5499 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-EJ-5501     TCGA-EJ-5502     TCGA-EJ-5503     TCGA-EJ-5504 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-EJ-5505     TCGA-EJ-5506     TCGA-EJ-5507     TCGA-EJ-5508 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-EJ-5509     TCGA-EJ-5510     TCGA-EJ-5511     TCGA-EJ-5512 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-EJ-5514     TCGA-EJ-5515     TCGA-EJ-5516     TCGA-EJ-5517 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-EJ-5518     TCGA-EJ-5519     TCGA-EJ-5521     TCGA-EJ-5522 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-EJ-5524     TCGA-EJ-5525     TCGA-EJ-5526     TCGA-EJ-5527 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-EJ-5530     TCGA-EJ-5532     TCGA-EJ-5542     TCGA-EJ-7115 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-EJ-7123     TCGA-EJ-7125     TCGA-EJ-7314     TCGA-EJ-7315 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-EJ-7317     TCGA-EJ-7321     TCGA-EJ-7327     TCGA-EJ-7328 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-EJ-7330     TCGA-EJ-7331     TCGA-EJ-7781     TCGA-EJ-7783 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-EJ-7784     TCGA-EJ-7785     TCGA-EJ-7786     TCGA-EJ-7788 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-EJ-7789     TCGA-EJ-7791     TCGA-EJ-7792     TCGA-EJ-7793 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-EJ-7794     TCGA-EJ-7797     TCGA-EJ-8474     TCGA-EJ-A46B 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-EJ-A46D     TCGA-EJ-A46E     TCGA-EJ-A46F     TCGA-EJ-A46H 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-EJ-A46I     TCGA-FC-7708     TCGA-FC-7961     TCGA-FC-A5OB 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-FC-A66V     TCGA-FC-A6HD     TCGA-G9-6329     TCGA-G9-6332 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-G9-6333     TCGA-G9-6336     TCGA-G9-6338     TCGA-G9-6342 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-G9-6343     TCGA-G9-6348     TCGA-G9-6351     TCGA-G9-6353 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-G9-6356     TCGA-G9-6361     TCGA-G9-6362     TCGA-G9-6363 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-G9-6364     TCGA-G9-6365     TCGA-G9-6366     TCGA-G9-6367 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-G9-6369     TCGA-G9-6370     TCGA-G9-6371     TCGA-G9-6377 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-G9-6378     TCGA-G9-6384     TCGA-G9-6385     TCGA-G9-6494 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-G9-6496     TCGA-G9-6499     TCGA-G9-7510     TCGA-G9-7519 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-G9-7521     TCGA-G9-7522     TCGA-G9-7523     TCGA-G9-7525 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-H9-7775     TCGA-HC-7075     TCGA-HC-7077     TCGA-HC-7078 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-HC-7079     TCGA-HC-7080     TCGA-HC-7209     TCGA-HC-7211 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-HC-7212     TCGA-HC-7213     TCGA-HC-7230     TCGA-HC-7231 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-HC-7233     TCGA-HC-7736     TCGA-HC-7737     TCGA-HC-7740 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-HC-7742     TCGA-HC-7744     TCGA-HC-7747     TCGA-HC-7748 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-HC-7749     TCGA-HC-7750     TCGA-HC-7752     TCGA-HC-7817 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-HC-7818     TCGA-HC-7821     TCGA-HC-8216     TCGA-HC-8265 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-HC-A4ZV     TCGA-HC-A6AL     TCGA-HC-A6AS     TCGA-HC-A6HX 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-HI-7168     TCGA-HI-7169     TCGA-HI-7170     TCGA-HI-7171 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-J4-8198     TCGA-J4-8200     TCGA-J4-A67N 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
[1] "hr=" "1"  
D6V2, continuous
                vv
clus             T2 T3 T4
  TP53 MUTATED    4 11  0
  TP53 WILD-TYPE 69 80  5
D6V3, multiclass
    clus
vv   TP53 MUTATED TP53 WILD-TYPE
  T2            4             69
  T3           11             80
  T4            0              5
D6V4, binary
                cls
clus               0   1
  TP53 MUTATED    13   2
  TP53 WILD-TYPE 123  14
[1] "tbl2"
                cls
clus             [,1] [,2]
  TP53 MUTATED     13    2
  TP53 WILD-TYPE  123   14
   clus
vv  TP53 MUTATED TP53 WILD-TYPE
  0           13            123
  1            2             14
                vv
clus              R0  R1  RX
  TP53 MUTATED    13   2   0
  TP53 WILD-TYPE 114  31   2
D6V5, multiclass
    clus
vv   TP53 MUTATED TP53 WILD-TYPE
  R0           13            114
  R1            2             31
  RX            0              2
D6V6, continuous
D6V7, continuous
D6V8, continuous
D6V9, continuous
D6V10, continuous
D6V11, continuous
D6V12, continuous
D6V13, continuous
D6V14, continuous
> q(save="no")
