[1] "terrence_modification_tag"
[1] TRUE
[1] "nver"         "-nVNozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "dx" ""  
[1] "dx" " " 
[1] "dx" " " 
[1] "AGE"
[1] "PATHOLOGY.T.STAGE"
[1] "PATHOLOGY.N.STAGE"
[1] "COMPLETENESS.OF.RESECTION"
[1] "NUMBER.OF.LYMPH.NODES"
[1] "GLEASON_SCORE_COMBINED"
[1] "GLEASON_SCORE_PRIMARY"
[1] "GLEASON_SCORE_SECONDARY"
[1] "GLEASON_SCORE"
[1] "PSA_RESULT_PREOP"
[1] "DAYS_TO_PREOP_PSA"
[1] "PSA_VALUE"
[1] "DAYS_TO_PSA"
[1] 6
                          Clinical feature           
AGE                       "AGE"                      
PATHOLOGY.T.STAGE         "PATHOLOGY T STAGE"        
PATHOLOGY.N.STAGE         "PATHOLOGY N STAGE"        
COMPLETENESS.OF.RESECTION "COMPLETENESS OF RESECTION"
NUMBER.OF.LYMPH.NODES     "NUMBER OF LYMPH NODES"    
GLEASON_SCORE_COMBINED    "GLEASON_SCORE_COMBINED"   
GLEASON_SCORE_PRIMARY     "GLEASON_SCORE_PRIMARY"    
GLEASON_SCORE_SECONDARY   "GLEASON_SCORE_SECONDARY"  
GLEASON_SCORE             "GLEASON_SCORE"            
PSA_RESULT_PREOP          "PSA_RESULT_PREOP"         
DAYS_TO_PREOP_PSA         "DAYS_TO_PREOP_PSA"        
PSA_VALUE                 "PSA_VALUE"                
DAYS_TO_PSA               "DAYS_TO_PSA"              
                          Statistical test            Significant genes
AGE                       "Spearman correlation test" "N=0"            
PATHOLOGY.T.STAGE         "Spearman correlation test" "N=3"            
PATHOLOGY.N.STAGE         "t test"                    "N=0"            
COMPLETENESS.OF.RESECTION "ANOVA test"                "N=0"            
NUMBER.OF.LYMPH.NODES     "Spearman correlation test" "N=0"            
GLEASON_SCORE_COMBINED    "Spearman correlation test" "N=2"            
GLEASON_SCORE_PRIMARY     "Spearman correlation test" "N=5"            
GLEASON_SCORE_SECONDARY   "Spearman correlation test" "N=0"            
GLEASON_SCORE             "Spearman correlation test" "N=4"            
PSA_RESULT_PREOP          "Spearman correlation test" "N=2"            
DAYS_TO_PREOP_PSA         "Spearman correlation test" "N=20"           
PSA_VALUE                 "Spearman correlation test" "N=0"            
DAYS_TO_PSA               "Spearman correlation test" "N=0"            
                          Associated with           
AGE                       " "                       
PATHOLOGY.T.STAGE         "higher stage"            
PATHOLOGY.N.STAGE         " "                       
COMPLETENESS.OF.RESECTION " "                       
NUMBER.OF.LYMPH.NODES     " "                       
GLEASON_SCORE_COMBINED    "higher score"            
GLEASON_SCORE_PRIMARY     "higher score"            
GLEASON_SCORE_SECONDARY   " "                       
GLEASON_SCORE             "higher score"            
PSA_RESULT_PREOP          "higher psa_result_preop" 
DAYS_TO_PREOP_PSA         "higher days_to_preop_psa"
PSA_VALUE                 " "                       
DAYS_TO_PSA               " "                       
                          &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
AGE                       " "                                                                                       
PATHOLOGY.T.STAGE         "N=3"                                                                                     
PATHOLOGY.N.STAGE         " "                                                                                       
COMPLETENESS.OF.RESECTION " "                                                                                       
NUMBER.OF.LYMPH.NODES     " "                                                                                       
GLEASON_SCORE_COMBINED    "N=1"                                                                                     
GLEASON_SCORE_PRIMARY     "N=4"                                                                                     
GLEASON_SCORE_SECONDARY   " "                                                                                       
GLEASON_SCORE             "N=4"                                                                                     
PSA_RESULT_PREOP          "N=2"                                                                                     
DAYS_TO_PREOP_PSA         "N=14"                                                                                    
PSA_VALUE                 " "                                                                                       
DAYS_TO_PSA               " "                                                                                       
                          Associated with                
AGE                       " "                       " "  
PATHOLOGY.T.STAGE         "lower stage"             "N=0"
PATHOLOGY.N.STAGE         " "                       " "  
COMPLETENESS.OF.RESECTION " "                       " "  
NUMBER.OF.LYMPH.NODES     " "                       " "  
GLEASON_SCORE_COMBINED    "lower score"             "N=1"
GLEASON_SCORE_PRIMARY     "lower score"             "N=1"
GLEASON_SCORE_SECONDARY   " "                       " "  
GLEASON_SCORE             "lower score"             "N=0"
PSA_RESULT_PREOP          "lower psa_result_preop"  "N=0"
DAYS_TO_PREOP_PSA         "lower days_to_preop_psa" "N=6"
PSA_VALUE                 " "                       " "  
DAYS_TO_PSA               " "                       " "  
