
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/12/Correlate_Genomic_Events.R")
> result <- main("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/12/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-tTRUE", "-iD=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/READ-TP/6158609/transformed.cor.cli.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/Append_Data/READ-TP/6154781/READ-TP.merged_data.txt", "-fF=", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=1", "-cQ=0.25", "-MF=ONLYSIG", "-oT=READ-TP", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "terrence_modification_tag"
[1] TRUE
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"         "-oT=READ-TP"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/Append_Data/READ-TP/6154781/READ-TP.merged_data.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/READ-TP/6158609/transformed.cor.cli.txt"

nPatients in clinical file=168, in cluster file=162, common to both=162
[1]  60 162
[1] "AMP PEAK  1(1Q21.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE 
                           48                           114 
  AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE 
                           48                           114 
[1] "AMP PEAK  2(1Q32.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  2(1Q32.2) MUTATED AMP PEAK  2(1Q32.2) WILD-TYPE 
                           48                           114 
  AMP PEAK  2(1Q32.2) MUTATED AMP PEAK  2(1Q32.2) WILD-TYPE 
                           48                           114 
[1] "AMP PEAK  3(5Q22.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  3(5Q22.3) MUTATED AMP PEAK  3(5Q22.3) WILD-TYPE 
                           20                           142 
  AMP PEAK  3(5Q22.3) MUTATED AMP PEAK  3(5Q22.3) WILD-TYPE 
                           20                           142 
[1] "AMP PEAK  4(6P21.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  4(6P21.1) MUTATED AMP PEAK  4(6P21.1) WILD-TYPE 
                           53                           109 
  AMP PEAK  4(6P21.1) MUTATED AMP PEAK  4(6P21.1) WILD-TYPE 
                           53                           109 
[1] "AMP PEAK  5(8P11.23) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  5(8P11.23) MUTATED AMP PEAK  5(8P11.23) WILD-TYPE 
                            52                            110 
  AMP PEAK  5(8P11.23) MUTATED AMP PEAK  5(8P11.23) WILD-TYPE 
                            52                            110 
[1] "AMP PEAK  6(8P11.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  6(8P11.21) MUTATED AMP PEAK  6(8P11.21) WILD-TYPE 
                            69                             93 
  AMP PEAK  6(8P11.21) MUTATED AMP PEAK  6(8P11.21) WILD-TYPE 
                            69                             93 
[1] "AMP PEAK  7(8Q24.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  7(8Q24.21) MUTATED AMP PEAK  7(8Q24.21) WILD-TYPE 
                           107                             55 
  AMP PEAK  7(8Q24.21) MUTATED AMP PEAK  7(8Q24.21) WILD-TYPE 
                           107                             55 
[1] "AMP PEAK  8(10Q22.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  8(10Q22.2) MUTATED AMP PEAK  8(10Q22.2) WILD-TYPE 
                            11                            151 
  AMP PEAK  8(10Q22.2) MUTATED AMP PEAK  8(10Q22.2) WILD-TYPE 
                            11                            151 
[1] "AMP PEAK  9(11P15.5) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  9(11P15.5) MUTATED AMP PEAK  9(11P15.5) WILD-TYPE 
                            44                            118 
  AMP PEAK  9(11P15.5) MUTATED AMP PEAK  9(11P15.5) WILD-TYPE 
                            44                            118 
[1] "AMP PEAK 10(11Q13.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 10(11Q13.3) MUTATED AMP PEAK 10(11Q13.3) WILD-TYPE 
                            27                            135 
  AMP PEAK 10(11Q13.3) MUTATED AMP PEAK 10(11Q13.3) WILD-TYPE 
                            27                            135 
[1] "AMP PEAK 11(12P13.33) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 11(12P13.33) MUTATED AMP PEAK 11(12P13.33) WILD-TYPE 
                             41                             121 
  AMP PEAK 11(12P13.33) MUTATED AMP PEAK 11(12P13.33) WILD-TYPE 
                             41                             121 
[1] "AMP PEAK 12(12P12.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 12(12P12.1) MUTATED AMP PEAK 12(12P12.1) WILD-TYPE 
                            40                            122 
  AMP PEAK 12(12P12.1) MUTATED AMP PEAK 12(12P12.1) WILD-TYPE 
                            40                            122 
[1] "AMP PEAK 13(13Q12.13) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 13(13Q12.13) MUTATED AMP PEAK 13(13Q12.13) WILD-TYPE 
                            123                              39 
  AMP PEAK 13(13Q12.13) MUTATED AMP PEAK 13(13Q12.13) WILD-TYPE 
                            123                              39 
[1] "AMP PEAK 14(13Q12.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 14(13Q12.2) MUTATED AMP PEAK 14(13Q12.2) WILD-TYPE 
                           122                             40 
  AMP PEAK 14(13Q12.2) MUTATED AMP PEAK 14(13Q12.2) WILD-TYPE 
                           122                             40 
[1] "AMP PEAK 15(13Q22.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 15(13Q22.1) MUTATED AMP PEAK 15(13Q22.1) WILD-TYPE 
                           117                             45 
  AMP PEAK 15(13Q22.1) MUTATED AMP PEAK 15(13Q22.1) WILD-TYPE 
                           117                             45 
[1] "AMP PEAK 16(15Q26.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 16(15Q26.1) MUTATED AMP PEAK 16(15Q26.1) WILD-TYPE 
                            13                            149 
  AMP PEAK 16(15Q26.1) MUTATED AMP PEAK 16(15Q26.1) WILD-TYPE 
                            13                            149 
[1] "AMP PEAK 17(16P11.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 17(16P11.2) MUTATED AMP PEAK 17(16P11.2) WILD-TYPE 
                            45                            117 
  AMP PEAK 17(16P11.2) MUTATED AMP PEAK 17(16P11.2) WILD-TYPE 
                            45                            117 
[1] "AMP PEAK 18(17Q12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 18(17Q12) MUTATED AMP PEAK 18(17Q12) WILD-TYPE 
                          43                          119 
  AMP PEAK 18(17Q12) MUTATED AMP PEAK 18(17Q12) WILD-TYPE 
                          43                          119 
[1] "AMP PEAK 19(17Q24.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 19(17Q24.1) MUTATED AMP PEAK 19(17Q24.1) WILD-TYPE 
                            37                            125 
  AMP PEAK 19(17Q24.1) MUTATED AMP PEAK 19(17Q24.1) WILD-TYPE 
                            37                            125 
[1] "AMP PEAK 20(19P13.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 20(19P13.2) MUTATED AMP PEAK 20(19P13.2) WILD-TYPE 
                            34                            128 
  AMP PEAK 20(19P13.2) MUTATED AMP PEAK 20(19P13.2) WILD-TYPE 
                            34                            128 
[1] "AMP PEAK 21(20Q11.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 21(20Q11.21) MUTATED AMP PEAK 21(20Q11.21) WILD-TYPE 
                            143                              19 
  AMP PEAK 21(20Q11.21) MUTATED AMP PEAK 21(20Q11.21) WILD-TYPE 
                            143                              19 
[1] "AMP PEAK 22(20Q11.23) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 22(20Q11.23) MUTATED AMP PEAK 22(20Q11.23) WILD-TYPE 
                            144                              18 
  AMP PEAK 22(20Q11.23) MUTATED AMP PEAK 22(20Q11.23) WILD-TYPE 
                            144                              18 
[1] "AMP PEAK 23(20Q13.33) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 23(20Q13.33) MUTATED AMP PEAK 23(20Q13.33) WILD-TYPE 
                            143                              19 
  AMP PEAK 23(20Q13.33) MUTATED AMP PEAK 23(20Q13.33) WILD-TYPE 
                            143                              19 
[1] "AMP PEAK 24(XP22.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 24(XP22.2) MUTATED AMP PEAK 24(XP22.2) WILD-TYPE 
                           31                           131 
  AMP PEAK 24(XP22.2) MUTATED AMP PEAK 24(XP22.2) WILD-TYPE 
                           31                           131 
[1] "AMP PEAK 25(XQ27.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 25(XQ27.3) MUTATED AMP PEAK 25(XQ27.3) WILD-TYPE 
                           36                           126 
  AMP PEAK 25(XQ27.3) MUTATED AMP PEAK 25(XQ27.3) WILD-TYPE 
                           36                           126 
[1] "DEL PEAK  1(1P36.11) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE 
                            72                             90 
  DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE 
                            72                             90 
[1] "DEL PEAK  2(1P33) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE 
                         50                         112 
  DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE 
                         50                         112 
[1] "DEL PEAK  3(1P13.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  3(1P13.2) MUTATED DEL PEAK  3(1P13.2) WILD-TYPE 
                           52                           110 
  DEL PEAK  3(1P13.2) MUTATED DEL PEAK  3(1P13.2) WILD-TYPE 
                           52                           110 
[1] "DEL PEAK  4(2P12) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  4(2P12) MUTATED DEL PEAK  4(2P12) WILD-TYPE 
                         18                         144 
  DEL PEAK  4(2P12) MUTATED DEL PEAK  4(2P12) WILD-TYPE 
                         18                         144 
[1] "DEL PEAK  5(3P14.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  5(3P14.2) MUTATED DEL PEAK  5(3P14.2) WILD-TYPE 
                           29                           133 
  DEL PEAK  5(3P14.2) MUTATED DEL PEAK  5(3P14.2) WILD-TYPE 
                           29                           133 
[1] "DEL PEAK  6(3Q26.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  6(3Q26.31) MUTATED DEL PEAK  6(3Q26.31) WILD-TYPE 
                            16                            146 
  DEL PEAK  6(3Q26.31) MUTATED DEL PEAK  6(3Q26.31) WILD-TYPE 
                            16                            146 
[1] "DEL PEAK  7(4P13) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  7(4P13) MUTATED DEL PEAK  7(4P13) WILD-TYPE 
                         59                         103 
  DEL PEAK  7(4P13) MUTATED DEL PEAK  7(4P13) WILD-TYPE 
                         59                         103 
[1] "DEL PEAK  8(4Q22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  8(4Q22.1) MUTATED DEL PEAK  8(4Q22.1) WILD-TYPE 
                           72                            90 
  DEL PEAK  8(4Q22.1) MUTATED DEL PEAK  8(4Q22.1) WILD-TYPE 
                           72                            90 
[1] "DEL PEAK  9(4Q35.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  9(4Q35.1) MUTATED DEL PEAK  9(4Q35.1) WILD-TYPE 
                           71                            91 
  DEL PEAK  9(4Q35.1) MUTATED DEL PEAK  9(4Q35.1) WILD-TYPE 
                           71                            91 
[1] "DEL PEAK 10(5Q11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 10(5Q11.2) MUTATED DEL PEAK 10(5Q11.2) WILD-TYPE 
                           51                           111 
  DEL PEAK 10(5Q11.2) MUTATED DEL PEAK 10(5Q11.2) WILD-TYPE 
                           51                           111 
[1] "DEL PEAK 11(5Q22.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 11(5Q22.2) MUTATED DEL PEAK 11(5Q22.2) WILD-TYPE 
                           57                           105 
  DEL PEAK 11(5Q22.2) MUTATED DEL PEAK 11(5Q22.2) WILD-TYPE 
                           57                           105 
[1] "DEL PEAK 12(6P25.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 12(6P25.3) MUTATED DEL PEAK 12(6P25.3) WILD-TYPE 
                           24                           138 
  DEL PEAK 12(6P25.3) MUTATED DEL PEAK 12(6P25.3) WILD-TYPE 
                           24                           138 
[1] "DEL PEAK 13(6Q26) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE 
                         30                         132 
  DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE 
                         30                         132 
[1] "DEL PEAK 14(7Q31.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 14(7Q31.1) MUTATED DEL PEAK 14(7Q31.1) WILD-TYPE 
                            4                           158 
  DEL PEAK 14(7Q31.1) MUTATED DEL PEAK 14(7Q31.1) WILD-TYPE 
                            4                           158 
[1] "DEL PEAK 15(8P23.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 15(8P23.2) MUTATED DEL PEAK 15(8P23.2) WILD-TYPE 
                           99                            63 
  DEL PEAK 15(8P23.2) MUTATED DEL PEAK 15(8P23.2) WILD-TYPE 
                           99                            63 
[1] "DEL PEAK 16(8P11.21) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 16(8P11.21) MUTATED DEL PEAK 16(8P11.21) WILD-TYPE 
                            24                            138 
  DEL PEAK 16(8P11.21) MUTATED DEL PEAK 16(8P11.21) WILD-TYPE 
                            24                            138 
[1] "DEL PEAK 17(10Q21.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 17(10Q21.1) MUTATED DEL PEAK 17(10Q21.1) WILD-TYPE 
                            37                            125 
  DEL PEAK 17(10Q21.1) MUTATED DEL PEAK 17(10Q21.1) WILD-TYPE 
                            37                            125 
[1] "DEL PEAK 18(10Q25.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 18(10Q25.2) MUTATED DEL PEAK 18(10Q25.2) WILD-TYPE 
                            47                            115 
  DEL PEAK 18(10Q25.2) MUTATED DEL PEAK 18(10Q25.2) WILD-TYPE 
                            47                            115 
[1] "DEL PEAK 19(11Q22.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 19(11Q22.3) MUTATED DEL PEAK 19(11Q22.3) WILD-TYPE 
                            38                            124 
  DEL PEAK 19(11Q22.3) MUTATED DEL PEAK 19(11Q22.3) WILD-TYPE 
                            38                            124 
[1] "DEL PEAK 20(12P13.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 20(12P13.1) MUTATED DEL PEAK 20(12P13.1) WILD-TYPE 
                            33                            129 
  DEL PEAK 20(12P13.1) MUTATED DEL PEAK 20(12P13.1) WILD-TYPE 
                            33                            129 
[1] "DEL PEAK 21(12Q22) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 21(12Q22) MUTATED DEL PEAK 21(12Q22) WILD-TYPE 
                          24                          138 
  DEL PEAK 21(12Q22) MUTATED DEL PEAK 21(12Q22) WILD-TYPE 
                          24                          138 
[1] "DEL PEAK 22(14Q11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 22(14Q11.2) MUTATED DEL PEAK 22(14Q11.2) WILD-TYPE 
                            68                             94 
  DEL PEAK 22(14Q11.2) MUTATED DEL PEAK 22(14Q11.2) WILD-TYPE 
                            68                             94 
[1] "DEL PEAK 23(14Q31.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 23(14Q31.1) MUTATED DEL PEAK 23(14Q31.1) WILD-TYPE 
                            70                             92 
  DEL PEAK 23(14Q31.1) MUTATED DEL PEAK 23(14Q31.1) WILD-TYPE 
                            70                             92 
[1] "DEL PEAK 24(15Q22.33) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 24(15Q22.33) MUTATED DEL PEAK 24(15Q22.33) WILD-TYPE 
                             76                              86 
  DEL PEAK 24(15Q22.33) MUTATED DEL PEAK 24(15Q22.33) WILD-TYPE 
                             76                              86 
[1] "DEL PEAK 25(16P13.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 25(16P13.3) MUTATED DEL PEAK 25(16P13.3) WILD-TYPE 
                            13                            149 
  DEL PEAK 25(16P13.3) MUTATED DEL PEAK 25(16P13.3) WILD-TYPE 
                            13                            149 
[1] "DEL PEAK 26(16Q23.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 26(16Q23.1) MUTATED DEL PEAK 26(16Q23.1) WILD-TYPE 
                            23                            139 
  DEL PEAK 26(16Q23.1) MUTATED DEL PEAK 26(16Q23.1) WILD-TYPE 
                            23                            139 
[1] "DEL PEAK 27(17P11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 27(17P11.2) MUTATED DEL PEAK 27(17P11.2) WILD-TYPE 
                           110                             52 
  DEL PEAK 27(17P11.2) MUTATED DEL PEAK 27(17P11.2) WILD-TYPE 
                           110                             52 
[1] "DEL PEAK 28(18Q21.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 28(18Q21.2) MUTATED DEL PEAK 28(18Q21.2) WILD-TYPE 
                           143                             19 
  DEL PEAK 28(18Q21.2) MUTATED DEL PEAK 28(18Q21.2) WILD-TYPE 
                           143                             19 
[1] "DEL PEAK 29(18Q22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 29(18Q22.1) MUTATED DEL PEAK 29(18Q22.1) WILD-TYPE 
                           138                             24 
  DEL PEAK 29(18Q22.1) MUTATED DEL PEAK 29(18Q22.1) WILD-TYPE 
                           138                             24 
[1] "DEL PEAK 30(19P13.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 30(19P13.3) MUTATED DEL PEAK 30(19P13.3) WILD-TYPE 
                            36                            126 
  DEL PEAK 30(19P13.3) MUTATED DEL PEAK 30(19P13.3) WILD-TYPE 
                            36                            126 
[1] "DEL PEAK 31(20P12.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 31(20P12.1) MUTATED DEL PEAK 31(20P12.1) WILD-TYPE 
                            60                            102 
  DEL PEAK 31(20P12.1) MUTATED DEL PEAK 31(20P12.1) WILD-TYPE 
                            60                            102 
[1] "DEL PEAK 32(20P12.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 32(20P12.1) MUTATED DEL PEAK 32(20P12.1) WILD-TYPE 
                            60                            102 
  DEL PEAK 32(20P12.1) MUTATED DEL PEAK 32(20P12.1) WILD-TYPE 
                            60                            102 
[1] "DEL PEAK 33(21Q11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 33(21Q11.2) MUTATED DEL PEAK 33(21Q11.2) WILD-TYPE 
                            71                             91 
  DEL PEAK 33(21Q11.2) MUTATED DEL PEAK 33(21Q11.2) WILD-TYPE 
                            71                             91 
[1] "DEL PEAK 34(22Q13.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 34(22Q13.31) MUTATED DEL PEAK 34(22Q13.31) WILD-TYPE 
                             67                              95 
  DEL PEAK 34(22Q13.31) MUTATED DEL PEAK 34(22Q13.31) WILD-TYPE 
                             67                              95 
[1] "DEL PEAK 35(XP22.33) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 35(XP22.33) MUTATED DEL PEAK 35(XP22.33) WILD-TYPE 
                            33                            129 
  DEL PEAK 35(XP22.33) MUTATED DEL PEAK 35(XP22.33) WILD-TYPE 
                            33                            129 
[1] "terrence_modification_tag"
[1] TRUE
[1] "data2feature, selection="
 [1] "YEARSTOBIRTH"                          
 [2] "VITALSTATUS"                           
 [3] "DAYSTODEATH"                           
 [4] "DAYSTOLASTFOLLOWUP"                    
 [5] "PRIMARYSITEOFDESEASE"                  
 [6] "NEOPLASM.DISEASESTAGE"                 
 [7] "PATHOLOGY.T.STAGE"                     
 [8] "PATHOLOGY.N.STAGE"                     
 [9] "PATHOLOGY.M.STAGE"                     
[10] "DCCUPLOADDATE"                         
[11] "GENDER"                                
[12] "DATEOFINITIALPATHOLOGICDIAGNOSIS"      
[13] "DAYSTOLASTKNOWNALIVE"                  
[14] "HISTOLOGICALTYPE"                      
[15] "RADIATIONS.RADIATION.REGIMENINDICATION"
[16] "COMPLETENESS.OF.RESECTION"             
[17] "NUMBER.OF.LYMPH.NODES"                 
[18] "GLEASON_SCORE"                         
[19] "PSA_VALUE"                             
[20] "DAYS_TO_PSA"                           
[21] "BATCHNUMBER"                           

Input Data has 21 rows and 162 columns.

[1] "Batch" "21"   
[1] "Last Follow UP"
TCGA-AF-2687 TCGA-AF-2689 TCGA-AF-2690 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-2693 
         734          546          524          323          412          581 
TCGA-AF-3400 TCGA-AF-3911 TCGA-AF-3913 TCGA-AF-4110 TCGA-AF-5654 TCGA-AF-6136 
         387          761          316          441          257          467 
TCGA-AF-6655 TCGA-AF-6672 TCGA-AG-3574 TCGA-AG-3575 TCGA-AG-3578 TCGA-AG-3580 
         355          316           NA          365           NA           NA 
TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3584 TCGA-AG-3586 TCGA-AG-3587 
          31           31           61           NA           31           31 
TCGA-AG-3591 TCGA-AG-3592 TCGA-AG-3593 TCGA-AG-3594 TCGA-AG-3598 TCGA-AG-3599 
          NA           NA           NA           NA           NA           30 
TCGA-AG-3600 TCGA-AG-3601 TCGA-AG-3602 TCGA-AG-3605 TCGA-AG-3608 TCGA-AG-3609 
          NA           NA           NA           30           NA           NA 
TCGA-AG-3611 TCGA-AG-3612 TCGA-AG-3725 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3728 
          NA           NA           NA          242           29           NA 
TCGA-AG-3731 TCGA-AG-3732 TCGA-AG-3742 TCGA-AG-3878 TCGA-AG-3881 TCGA-AG-3882 
          31           NA           30           30           NA           NA 
TCGA-AG-3883 TCGA-AG-3885 TCGA-AG-3887 TCGA-AG-3890 TCGA-AG-3892 TCGA-AG-3893 
          31           NA           28           NA           31           30 
TCGA-AG-3894 TCGA-AG-3896 TCGA-AG-3898 TCGA-AG-3901 TCGA-AG-3902 TCGA-AG-3909 
          30           31           NA           NA           NA           NA 
TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4005 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-4015 
          31           31           NA           31           31           NA 
TCGA-AG-4021 TCGA-AG-4022 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H 
          NA           30          637          423          183          789 
TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01J 
         700          518          484          396           31           31 
TCGA-AG-A01L TCGA-AG-A01N TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A023 
         365          365         2130         1946          334           NA 
TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 
        1519           NA           NA         1884         1246         1156 
TCGA-AH-6544 TCGA-AH-6547 TCGA-AH-6643 TCGA-AH-6644 TCGA-AH-6897 TCGA-AH-6903 
          15           44           21           22          140           55 
TCGA-BM-6198 TCGA-CI-6619 TCGA-CI-6620 TCGA-CI-6621 TCGA-CI-6622 TCGA-CI-6623 
         310          183          183           NA          211          285 
TCGA-CI-6624 TCGA-CL-4957 TCGA-CL-5917 TCGA-CL-5918 TCGA-DC-4745 TCGA-DC-4749 
         143          425         1825          243          334          335 
TCGA-DC-5337 TCGA-DC-5869 TCGA-DC-6154 TCGA-DC-6155 TCGA-DC-6156 TCGA-DC-6157 
         457          395          365          426          457         1095 
TCGA-DC-6158 TCGA-DC-6160 TCGA-DC-6681 TCGA-DC-6682 TCGA-DC-6683 TCGA-DT-5265 
         212          914          394          396          306          161 
TCGA-DY-A0XA TCGA-DY-A1DC TCGA-DY-A1DD TCGA-DY-A1DE TCGA-DY-A1DF TCGA-DY-A1DG 
        3845         1257         1741         3932          734         1566 
TCGA-DY-A1H8 TCGA-EF-5830 TCGA-EF-5831 TCGA-EI-6506 TCGA-EI-6507 TCGA-EI-6508 
         991           15           73          625          607          636 
TCGA-EI-6509 TCGA-EI-6510 TCGA-EI-6511 TCGA-EI-6512 TCGA-EI-6513 TCGA-EI-6514 
         517          556          482          538          497          496 
TCGA-EI-6881 TCGA-EI-6882 TCGA-EI-6883 TCGA-EI-6884 TCGA-EI-6885 TCGA-EI-6917 
         498          262          350          328          414          531 
TCGA-EI-7002 TCGA-EI-7004 TCGA-F5-6464 TCGA-F5-6465 TCGA-F5-6571 TCGA-F5-6702 
         364          257           NA          103           26           66 
TCGA-F5-6810 TCGA-F5-6811 TCGA-F5-6812 TCGA-F5-6813 TCGA-F5-6814 TCGA-F5-6861 
          12           31           20           21           16           33 
TCGA-F5-6863 TCGA-F5-6864 TCGA-G5-6233 TCGA-G5-6235 TCGA-G5-6572 TCGA-G5-6641 
          23           14           NA         1696           NA          804 
Variable 1:'AGE':	nDistinctValues=47,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 3:'DAYSTODEATH':	nDistinctValues=13,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'DAYSTOLASTFOLLOWUP':	nDistinctValues=93,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 5:'PRIMARY.SITE.OF.DISEASE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 6:'NEOPLASM.DISEASESTAGE':	nDistinctValues=11,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'PATHOLOGY.T.STAGE':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'PATHOLOGY.N.STAGE':	nDistinctValues=9,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'PATHOLOGY.M.STAGE':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'DCCUPLOADDAY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 11:'GENDER':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'DAYOFINITIALPATHOLOGICDIAGNOSIS':	nDistinctValues=11,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 13:'DAYSTOLASTKNOWNALIVE':	nDistinctValues=17,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 14:'HISTOLOGICAL.TYPE':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 15:'RADIATIONS.RADIATION.REGIMENINDICATION':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 16:'COMPLETENESS.OF.RESECTION':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 17:'NUMBER.OF.LYMPH.NODES':	nDistinctValues=21,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 18:'GLEASON_SCORE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 19:'PSA_VALUE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 20:'DAYS_TO_PSA':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 21:'BATCH.NUMBER':	nDistinctValues=12,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
 [1] "AGE"                                   
 [2] "NEOPLASM.DISEASESTAGE"                 
 [3] "PATHOLOGY.T.STAGE"                     
 [4] "PATHOLOGY.N.STAGE"                     
 [5] "PATHOLOGY.M.STAGE"                     
 [6] "GENDER"                                
 [7] "HISTOLOGICAL.TYPE"                     
 [8] "RADIATIONS.RADIATION.REGIMENINDICATION"
 [9] "COMPLETENESS.OF.RESECTION"             
[10] "NUMBER.OF.LYMPH.NODES"                 
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T" "3"          
[1] "PATHOLOGY.N" "4"          
Output Data has 162 columns, 1 survival variables, and 10 non-survival variables.
AGE, nv=47, binary=FALSE, numeric=TRUE
NEOPLASM.DISEASESTAGE, nv=11, binary=FALSE, numeric=FALSE
PATHOLOGY.T.STAGE, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.T',vnm)"
vv
 T1  T2  T3  T4 
  9  29 109  14 
[1] "table(vv)"
vv
 T1  T2  T3  T4 
  9  29 109  14 
$ClinVariableName
[1] "PATHOLOGY.T.STAGE"

$Table
vv
 T1  T2  T3  T4 
  9  29 109  14 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


 T1  T2  T3  T4 
  9  29 109  14 
PATHOLOGY.N.STAGE, nv=3, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.N',vnm)"
vv
N0 N1 N2 
83 45 32 
[1] "table(vv)"
vv
N0 N1 N2 
83 45 32 
$ClinVariableName
[1] "PATHOLOGY.N.STAGE"

$Table
vv
N0 N1 N2 
83 45 32 

$nClasses
[1] 3

$ClinVariableType
[1] "multiclass(3)"


N0 N1 N2 
83 45 32 
PATHOLOGY.M.STAGE, nv=4, binary=FALSE, numeric=FALSE
GENDER, nv=2, binary=FALSE, numeric=FALSE
HISTOLOGICAL.TYPE, nv=2, binary=FALSE, numeric=FALSE
RADIATIONS.RADIATION.REGIMENINDICATION, nv=2, binary=FALSE, numeric=FALSE
COMPLETENESS.OF.RESECTION, nv=4, binary=FALSE, numeric=FALSE
NUMBER.OF.LYMPH.NODES, nv=21, binary=FALSE, numeric=TRUE

Clustering(1) Variable = AMP PEAK  1(1Q21.3) MUTATION ANALYSIS
D1V1, survival
                               sevent
clus2                            0  1
  AMP PEAK  1(1Q21.3) MUTATED   33  5
  AMP PEAK  1(1Q21.3) WILD-TYPE 84  8
  AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE 
                           38                            92 
  AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE 
                            5                             8 
$`AMP PEAK  1(1Q21.3) MUTATED`
TCGA-AF-2687 TCGA-AF-2692 TCGA-AF-2693 TCGA-AF-4110 TCGA-AF-6136 TCGA-AF-6672 
       24.13        13.55        19.10        14.50        15.35        10.39 
TCGA-AG-3587 TCGA-AG-3999 TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A015 TCGA-AG-A01N 
        1.02         1.02        23.01        17.03        13.02        12.00 
TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A032 TCGA-AH-6643 
       70.03        63.98         1.94        38.93        38.01         0.69 
TCGA-AH-6644 TCGA-BM-6198 TCGA-CI-6623 TCGA-CI-6624 TCGA-DC-4749 TCGA-DC-6155 
        0.72        10.19         9.37         4.70        11.01        14.01 
TCGA-DC-6156 TCGA-DY-A1DE TCGA-DY-A1DF TCGA-EI-6506 TCGA-EI-6882 TCGA-EI-6884 
       15.02       129.27        24.13        20.55         8.61        10.78 
TCGA-EI-6885 TCGA-EI-7002 TCGA-F5-6810 TCGA-F5-6813 TCGA-F5-6863 TCGA-G5-6233 
       13.61        11.97         0.39         0.69         0.76        18.25 
TCGA-G5-6572 TCGA-G5-6641 
       47.08        26.43 

$`AMP PEAK  1(1Q21.3) WILD-TYPE`
TCGA-AF-2689 TCGA-AF-2690 TCGA-AF-2691 TCGA-AF-3400 TCGA-AF-3911 TCGA-AF-3913 
       17.95        17.23        10.62        12.72        25.02        10.39 
TCGA-AF-5654 TCGA-AF-6655 TCGA-AG-3575 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 
        8.45        11.67        12.00         1.02         1.02         2.01 
TCGA-AG-3586 TCGA-AG-3599 TCGA-AG-3605 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3731 
        1.02         0.99         0.99         7.96         0.95         1.02 
TCGA-AG-3742 TCGA-AG-3878 TCGA-AG-3883 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 
        0.99         0.99         1.02         0.92         1.02         0.99 
TCGA-AG-3894 TCGA-AG-3896 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-4022 
        0.99         1.02         1.02         1.02         1.02         0.99 
TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A014 TCGA-AG-A016 
       20.94        13.91         6.02        25.94        15.91         1.02 
TCGA-AG-A01J TCGA-AG-A01L TCGA-AG-A020 TCGA-AG-A023 TCGA-AG-A025 TCGA-AG-A02N 
        1.02        12.00        10.98        51.98        49.94        61.94 
TCGA-AG-A02X TCGA-AH-6544 TCGA-AH-6547 TCGA-AH-6897 TCGA-AH-6903 TCGA-CI-6619 
       40.96         0.49         1.45         4.60         1.81         6.02 
TCGA-CI-6620 TCGA-CI-6622 TCGA-CL-4957 TCGA-CL-5917 TCGA-CL-5918 TCGA-DC-4745 
        6.02         6.94        13.97        60.00         7.99        10.98 
TCGA-DC-5337 TCGA-DC-5869 TCGA-DC-6154 TCGA-DC-6157 TCGA-DC-6158 TCGA-DC-6160 
       15.02        12.99        12.00        36.00         6.97        30.05 
TCGA-DC-6681 TCGA-DC-6682 TCGA-DC-6683 TCGA-DT-5265 TCGA-DY-A0XA TCGA-DY-A1DC 
       12.95        13.02        10.06         5.29       126.41        41.33 
TCGA-DY-A1DD TCGA-DY-A1DG TCGA-DY-A1H8 TCGA-EF-5830 TCGA-EF-5831 TCGA-EI-6507 
       57.24        51.48        32.58         0.49         2.40        19.96 
TCGA-EI-6508 TCGA-EI-6509 TCGA-EI-6510 TCGA-EI-6511 TCGA-EI-6512 TCGA-EI-6513 
       20.91        17.00        18.28        15.85        17.69        16.34 
TCGA-EI-6514 TCGA-EI-6881 TCGA-EI-6883 TCGA-EI-6917 TCGA-EI-7004 TCGA-F5-6465 
       16.31        16.37        11.51        17.46         8.45         3.39 
TCGA-F5-6571 TCGA-F5-6702 TCGA-F5-6811 TCGA-F5-6812 TCGA-F5-6814 TCGA-F5-6861 
        0.85         2.17         1.02         0.66         0.53         1.08 
TCGA-F5-6864 TCGA-G5-6235 
        0.46        55.76 

  AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE 
                         0.39                          0.46 
  AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE 
                       129.27                        126.41 
  AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE 
                       13.580                         9.255 
[1] "0.4 - 129.3 (13.6)" "0.5 - 126.4 (9.3)" 
                   TCGA-AF-2687                    TCGA-AF-2689 
  "AMP PEAK  1(1Q21.3) MUTATED" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AF-2692                    TCGA-AF-2693 
  "AMP PEAK  1(1Q21.3) MUTATED"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-AF-3400                    TCGA-AF-3911 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AF-3913                    TCGA-AF-4110 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-AG-3575                    TCGA-AG-3581 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-3582                    TCGA-AG-3583 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-3586                    TCGA-AG-3587 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-AG-3599                    TCGA-AG-3605 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-3726                    TCGA-AG-3727 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-3731                    TCGA-AG-3742 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-3878                    TCGA-AG-3883 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-3896                    TCGA-AG-3999 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-AG-4001                    TCGA-AG-4007 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-4008                    TCGA-AG-4022 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-A002                    TCGA-AG-A008 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-A00C                    TCGA-AG-A00H 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-A00Y                    TCGA-AG-A011 
  "AMP PEAK  1(1Q21.3) MUTATED"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-AG-A014                    TCGA-AG-A015 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-AG-A016                    TCGA-AG-A01J 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-A01L                    TCGA-AG-A01N 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-AG-A01W                    TCGA-AG-A01Y 
  "AMP PEAK  1(1Q21.3) MUTATED"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-AG-A020                    TCGA-AG-A023 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-A025                    TCGA-AG-A026 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-AG-A02G                    TCGA-AG-A02N 
  "AMP PEAK  1(1Q21.3) MUTATED" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-A02X                    TCGA-AG-A032 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-AH-6544                    TCGA-AH-6547 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AH-6643                    TCGA-AH-6644 
  "AMP PEAK  1(1Q21.3) MUTATED"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-AH-6897                    TCGA-AH-6903 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-BM-6198                    TCGA-CI-6619 
  "AMP PEAK  1(1Q21.3) MUTATED" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-CI-6620                    TCGA-CI-6622 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-CI-6623                    TCGA-CI-6624 
  "AMP PEAK  1(1Q21.3) MUTATED"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-CL-4957                    TCGA-CL-5917 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-CL-5918                    TCGA-DC-4745 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-DC-4749                    TCGA-DC-5337 
  "AMP PEAK  1(1Q21.3) MUTATED" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-DC-5869                    TCGA-DC-6154 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-DC-6155                    TCGA-DC-6156 
  "AMP PEAK  1(1Q21.3) MUTATED"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-DC-6157                    TCGA-DC-6158 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-DC-6160                    TCGA-DC-6681 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-DC-6682                    TCGA-DC-6683 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-DT-5265                    TCGA-DY-A0XA 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-DY-A1DC                    TCGA-DY-A1DD 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-DY-A1DE                    TCGA-DY-A1DF 
  "AMP PEAK  1(1Q21.3) MUTATED"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-DY-A1DG                    TCGA-DY-A1H8 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EF-5830                    TCGA-EF-5831 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EI-6506                    TCGA-EI-6507 
  "AMP PEAK  1(1Q21.3) MUTATED" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EI-6508                    TCGA-EI-6509 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EI-6510                    TCGA-EI-6511 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EI-6512                    TCGA-EI-6513 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EI-6514                    TCGA-EI-6881 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EI-6882                    TCGA-EI-6883 
  "AMP PEAK  1(1Q21.3) MUTATED" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EI-6884                    TCGA-EI-6885 
  "AMP PEAK  1(1Q21.3) MUTATED"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-EI-6917                    TCGA-EI-7002 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-EI-7004                    TCGA-F5-6465 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-F5-6571                    TCGA-F5-6702 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-F5-6810                    TCGA-F5-6811 
  "AMP PEAK  1(1Q21.3) MUTATED" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-F5-6812                    TCGA-F5-6813 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-F5-6814                    TCGA-F5-6861 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-F5-6863                    TCGA-F5-6864 
  "AMP PEAK  1(1Q21.3) MUTATED" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-G5-6233                    TCGA-G5-6235 
  "AMP PEAK  1(1Q21.3) MUTATED" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-G5-6572                    TCGA-G5-6641 
  "AMP PEAK  1(1Q21.3) MUTATED"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-AF-2687                    TCGA-AF-2689 
  "AMP PEAK  1(1Q21.3) MUTATED" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AF-2692                    TCGA-AF-2693 
  "AMP PEAK  1(1Q21.3) MUTATED"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-AF-3400                    TCGA-AF-3911 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AF-3913                    TCGA-AF-4110 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-AG-3575                    TCGA-AG-3581 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-3582                    TCGA-AG-3583 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-3586                    TCGA-AG-3587 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-AG-3599                    TCGA-AG-3605 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-3726                    TCGA-AG-3727 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-3731                    TCGA-AG-3742 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-3878                    TCGA-AG-3883 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-3896                    TCGA-AG-3999 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-AG-4001                    TCGA-AG-4007 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-4008                    TCGA-AG-4022 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-A002                    TCGA-AG-A008 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-A00C                    TCGA-AG-A00H 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-A00Y                    TCGA-AG-A011 
  "AMP PEAK  1(1Q21.3) MUTATED"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-AG-A014                    TCGA-AG-A015 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-AG-A016                    TCGA-AG-A01J 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-A01L                    TCGA-AG-A01N 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-AG-A01W                    TCGA-AG-A01Y 
  "AMP PEAK  1(1Q21.3) MUTATED"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-AG-A020                    TCGA-AG-A023 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-A025                    TCGA-AG-A026 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-AG-A02G                    TCGA-AG-A02N 
  "AMP PEAK  1(1Q21.3) MUTATED" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-A02X                    TCGA-AG-A032 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-AH-6544                    TCGA-AH-6547 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AH-6643                    TCGA-AH-6644 
  "AMP PEAK  1(1Q21.3) MUTATED"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-AH-6897                    TCGA-AH-6903 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-BM-6198                    TCGA-CI-6619 
  "AMP PEAK  1(1Q21.3) MUTATED" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-CI-6620                    TCGA-CI-6622 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-CI-6623                    TCGA-CI-6624 
  "AMP PEAK  1(1Q21.3) MUTATED"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-CL-4957                    TCGA-CL-5917 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-CL-5918                    TCGA-DC-4745 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-DC-4749                    TCGA-DC-5337 
  "AMP PEAK  1(1Q21.3) MUTATED" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-DC-5869                    TCGA-DC-6154 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-DC-6155                    TCGA-DC-6156 
  "AMP PEAK  1(1Q21.3) MUTATED"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-DC-6157                    TCGA-DC-6158 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-DC-6160                    TCGA-DC-6681 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-DC-6682                    TCGA-DC-6683 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-DT-5265                    TCGA-DY-A0XA 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-DY-A1DC                    TCGA-DY-A1DD 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-DY-A1DE                    TCGA-DY-A1DF 
  "AMP PEAK  1(1Q21.3) MUTATED"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-DY-A1DG                    TCGA-DY-A1H8 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EF-5830                    TCGA-EF-5831 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EI-6506                    TCGA-EI-6507 
  "AMP PEAK  1(1Q21.3) MUTATED" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EI-6508                    TCGA-EI-6509 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EI-6510                    TCGA-EI-6511 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EI-6512                    TCGA-EI-6513 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EI-6514                    TCGA-EI-6881 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EI-6882                    TCGA-EI-6883 
  "AMP PEAK  1(1Q21.3) MUTATED" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EI-6884                    TCGA-EI-6885 
  "AMP PEAK  1(1Q21.3) MUTATED"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-EI-6917                    TCGA-EI-7002 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-EI-7004                    TCGA-F5-6465 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-F5-6571                    TCGA-F5-6702 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-F5-6810                    TCGA-F5-6811 
  "AMP PEAK  1(1Q21.3) MUTATED" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-F5-6812                    TCGA-F5-6813 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-F5-6814                    TCGA-F5-6861 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-F5-6863                    TCGA-F5-6864 
  "AMP PEAK  1(1Q21.3) MUTATED" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-G5-6233                    TCGA-G5-6235 
  "AMP PEAK  1(1Q21.3) MUTATED" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-G5-6572                    TCGA-G5-6641 
  "AMP PEAK  1(1Q21.3) MUTATED"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-AF-2687                    TCGA-AF-2689 
  "AMP PEAK  1(1Q21.3) MUTATED" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AF-2692                    TCGA-AF-2693 
  "AMP PEAK  1(1Q21.3) MUTATED"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-AF-3400                    TCGA-AF-3911 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AF-3913                    TCGA-AF-4110 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-AG-3575                    TCGA-AG-3581 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-3582                    TCGA-AG-3583 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-3586                    TCGA-AG-3587 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-AG-3599                    TCGA-AG-3605 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-3726                    TCGA-AG-3727 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-3731                    TCGA-AG-3742 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-3878                    TCGA-AG-3883 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-3896                    TCGA-AG-3999 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-AG-4001                    TCGA-AG-4007 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-4008                    TCGA-AG-4022 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-A002                    TCGA-AG-A008 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-A00C                    TCGA-AG-A00H 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-A00Y                    TCGA-AG-A011 
  "AMP PEAK  1(1Q21.3) MUTATED"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-AG-A014                    TCGA-AG-A015 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-AG-A016                    TCGA-AG-A01J 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-A01L                    TCGA-AG-A01N 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-AG-A01W                    TCGA-AG-A01Y 
  "AMP PEAK  1(1Q21.3) MUTATED"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-AG-A020                    TCGA-AG-A023 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-A025                    TCGA-AG-A026 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-AG-A02G                    TCGA-AG-A02N 
  "AMP PEAK  1(1Q21.3) MUTATED" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-A02X                    TCGA-AG-A032 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-AH-6544                    TCGA-AH-6547 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AH-6643                    TCGA-AH-6644 
  "AMP PEAK  1(1Q21.3) MUTATED"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-AH-6897                    TCGA-AH-6903 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-BM-6198                    TCGA-CI-6619 
  "AMP PEAK  1(1Q21.3) MUTATED" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-CI-6620                    TCGA-CI-6622 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-CI-6623                    TCGA-CI-6624 
  "AMP PEAK  1(1Q21.3) MUTATED"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-CL-4957                    TCGA-CL-5917 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-CL-5918                    TCGA-DC-4745 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-DC-4749                    TCGA-DC-5337 
  "AMP PEAK  1(1Q21.3) MUTATED" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-DC-5869                    TCGA-DC-6154 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-DC-6155                    TCGA-DC-6156 
  "AMP PEAK  1(1Q21.3) MUTATED"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-DC-6157                    TCGA-DC-6158 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-DC-6160                    TCGA-DC-6681 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-DC-6682                    TCGA-DC-6683 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-DT-5265                    TCGA-DY-A0XA 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-DY-A1DC                    TCGA-DY-A1DD 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-DY-A1DE                    TCGA-DY-A1DF 
  "AMP PEAK  1(1Q21.3) MUTATED"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-DY-A1DG                    TCGA-DY-A1H8 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EF-5830                    TCGA-EF-5831 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EI-6506                    TCGA-EI-6507 
  "AMP PEAK  1(1Q21.3) MUTATED" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EI-6508                    TCGA-EI-6509 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EI-6510                    TCGA-EI-6511 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EI-6512                    TCGA-EI-6513 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EI-6514                    TCGA-EI-6881 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EI-6882                    TCGA-EI-6883 
  "AMP PEAK  1(1Q21.3) MUTATED" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EI-6884                    TCGA-EI-6885 
  "AMP PEAK  1(1Q21.3) MUTATED"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-EI-6917                    TCGA-EI-7002 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-EI-7004                    TCGA-F5-6465 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-F5-6571                    TCGA-F5-6702 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-F5-6810                    TCGA-F5-6811 
  "AMP PEAK  1(1Q21.3) MUTATED" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-F5-6812                    TCGA-F5-6813 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-F5-6814                    TCGA-F5-6861 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-F5-6863                    TCGA-F5-6864 
  "AMP PEAK  1(1Q21.3) MUTATED" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-G5-6233                    TCGA-G5-6235 
  "AMP PEAK  1(1Q21.3) MUTATED" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-G5-6572                    TCGA-G5-6641 
  "AMP PEAK  1(1Q21.3) MUTATED"   "AMP PEAK  1(1Q21.3) MUTATED" 
[1] "hr=" "1.2"
D1V2, continuous
                               vv
clus                            STAGE I STAGE II STAGE IIA STAGE IIB STAGE IIC
  AMP PEAK  1(1Q21.3) MUTATED         7        3        12         0         1
  AMP PEAK  1(1Q21.3) WILD-TYPE      23        5        26         2         1
                               vv
clus                            STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  AMP PEAK  1(1Q21.3) MUTATED           1          3          5          7
  AMP PEAK  1(1Q21.3) WILD-TYPE         4          6         18          7
                               vv
clus                            STAGE IV STAGE IVA
  AMP PEAK  1(1Q21.3) MUTATED          5         2
  AMP PEAK  1(1Q21.3) WILD-TYPE       12         7
D1V3, multiclass
                               vv
clus                            T1 T2 T3 T4
  AMP PEAK  1(1Q21.3) MUTATED    3  8 28  8
  AMP PEAK  1(1Q21.3) WILD-TYPE  6 21 81  6
D1V4, multiclass
    clus
vv   AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE
  T1                           3                             6
  T2                           8                            21
  T3                          28                            81
  T4                           8                             6
                               vv
clus                            N0 N1 N2
  AMP PEAK  1(1Q21.3) MUTATED   23 11 12
  AMP PEAK  1(1Q21.3) WILD-TYPE 60 34 20
D1V5, multiclass
    clus
vv   AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE
  N0                          23                            60
  N1                          11                            34
  N2                          12                            20
                               vv
clus                            M0 M1 M1A MX
  AMP PEAK  1(1Q21.3) MUTATED   34  4   1  7
  AMP PEAK  1(1Q21.3) WILD-TYPE 89 18   1  6
D1V6, multiclass
     clus
vv    AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE
  M0                           34                            89
  M1                            4                            18
  M1A                           1                             1
  MX                            7                             6
D1V7, binary
                               cls
clus                             0  1
  AMP PEAK  1(1Q21.3) MUTATED   21 27
  AMP PEAK  1(1Q21.3) WILD-TYPE 53 61
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  1(1Q21.3) MUTATED     21   27
  AMP PEAK  1(1Q21.3) WILD-TYPE   53   61
        clus
vv       AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE
  FEMALE                          21                            53
  MALE                            27                            61
D1V8, binary
                               cls
clus                              0   1
  AMP PEAK  1(1Q21.3) MUTATED    41   3
  AMP PEAK  1(1Q21.3) WILD-TYPE 102  10
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  1(1Q21.3) MUTATED     41    3
  AMP PEAK  1(1Q21.3) WILD-TYPE  102   10
                                clus
vv                               AMP PEAK  1(1Q21.3) MUTATED
  RECTAL ADENOCARCINOMA                                   41
  RECTAL MUCINOUS ADENOCARCINOMA                           3
                                clus
vv                               AMP PEAK  1(1Q21.3) WILD-TYPE
  RECTAL ADENOCARCINOMA                                    102
  RECTAL MUCINOUS ADENOCARCINOMA                            10
D1V9, binary
                               cls
clus                              0   1
  AMP PEAK  1(1Q21.3) MUTATED     4  44
  AMP PEAK  1(1Q21.3) WILD-TYPE   2 112
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  1(1Q21.3) MUTATED      4   44
  AMP PEAK  1(1Q21.3) WILD-TYPE    2  112
     clus
vv    AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE
  NO                            4                             2
  YES                          44                           112
                               vv
clus                            R0 R1 R2 RX
  AMP PEAK  1(1Q21.3) MUTATED   33  1  3  0
  AMP PEAK  1(1Q21.3) WILD-TYPE 88  1  9  3
D1V10, multiclass
    clus
vv   AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE
  R0                          33                            88
  R1                           1                             1
  R2                           3                             9
  RX                           0                             3
D1V11, continuous

Clustering(2) Variable = AMP PEAK  2(1Q32.2) MUTATION ANALYSIS
D2V1, survival
                               sevent
clus2                            0  1
  AMP PEAK  2(1Q32.2) MUTATED   31  7
  AMP PEAK  2(1Q32.2) WILD-TYPE 86  6
  AMP PEAK  2(1Q32.2) MUTATED AMP PEAK  2(1Q32.2) WILD-TYPE 
                           38                            92 
  AMP PEAK  2(1Q32.2) MUTATED AMP PEAK  2(1Q32.2) WILD-TYPE 
                            7                             6 
$`AMP PEAK  2(1Q32.2) MUTATED`
TCGA-AF-2692 TCGA-AF-4110 TCGA-AF-6136 TCGA-AF-6672 TCGA-AG-3587 TCGA-AG-3999 
       13.55        14.50        15.35        10.39         1.02         1.02 
TCGA-AG-A00Y TCGA-AG-A015 TCGA-AG-A01N TCGA-AG-A01W TCGA-AG-A023 TCGA-AG-A026 
       23.01        13.02        12.00        70.03        51.98         1.94 
TCGA-AG-A02G TCGA-AG-A032 TCGA-AH-6544 TCGA-AH-6643 TCGA-AH-6644 TCGA-BM-6198 
       38.93        38.01         0.49         0.69         0.72        10.19 
TCGA-CI-6623 TCGA-CI-6624 TCGA-DC-4749 TCGA-DC-6155 TCGA-DC-6156 TCGA-DY-A1DE 
        9.37         4.70        11.01        14.01        15.02       129.27 
TCGA-DY-A1DF TCGA-DY-A1H8 TCGA-EI-6506 TCGA-EI-6882 TCGA-EI-6884 TCGA-EI-6885 
       24.13        32.58        20.55         8.61        10.78        13.61 
TCGA-EI-7002 TCGA-EI-7004 TCGA-F5-6810 TCGA-F5-6813 TCGA-F5-6863 TCGA-G5-6233 
       11.97         8.45         0.39         0.69         0.76        18.25 
TCGA-G5-6572 TCGA-G5-6641 
       47.08        26.43 

$`AMP PEAK  2(1Q32.2) WILD-TYPE`
TCGA-AF-2687 TCGA-AF-2689 TCGA-AF-2690 TCGA-AF-2691 TCGA-AF-2693 TCGA-AF-3400 
       24.13        17.95        17.23        10.62        19.10        12.72 
TCGA-AF-3911 TCGA-AF-3913 TCGA-AF-5654 TCGA-AF-6655 TCGA-AG-3575 TCGA-AG-3581 
       25.02        10.39         8.45        11.67        12.00         1.02 
TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3586 TCGA-AG-3599 TCGA-AG-3605 TCGA-AG-3726 
        1.02         2.01         1.02         0.99         0.99         7.96 
TCGA-AG-3727 TCGA-AG-3731 TCGA-AG-3742 TCGA-AG-3878 TCGA-AG-3883 TCGA-AG-3887 
        0.95         1.02         0.99         0.99         1.02         0.92 
TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3896 TCGA-AG-4001 TCGA-AG-4007 
        1.02         0.99         0.99         1.02         1.02         1.02 
TCGA-AG-4008 TCGA-AG-4022 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H 
        1.02         0.99        20.94        13.91         6.02        25.94 
TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A016 TCGA-AG-A01J TCGA-AG-A01L TCGA-AG-A01Y 
       17.03        15.91         1.02         1.02        12.00        63.98 
TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A02N TCGA-AG-A02X TCGA-AH-6547 TCGA-AH-6897 
       10.98        49.94        61.94        40.96         1.45         4.60 
TCGA-AH-6903 TCGA-CI-6619 TCGA-CI-6620 TCGA-CI-6622 TCGA-CL-4957 TCGA-CL-5917 
        1.81         6.02         6.02         6.94        13.97        60.00 
TCGA-CL-5918 TCGA-DC-4745 TCGA-DC-5337 TCGA-DC-5869 TCGA-DC-6154 TCGA-DC-6157 
        7.99        10.98        15.02        12.99        12.00        36.00 
TCGA-DC-6158 TCGA-DC-6160 TCGA-DC-6681 TCGA-DC-6682 TCGA-DC-6683 TCGA-DT-5265 
        6.97        30.05        12.95        13.02        10.06         5.29 
TCGA-DY-A0XA TCGA-DY-A1DC TCGA-DY-A1DD TCGA-DY-A1DG TCGA-EF-5830 TCGA-EF-5831 
      126.41        41.33        57.24        51.48         0.49         2.40 
TCGA-EI-6507 TCGA-EI-6508 TCGA-EI-6509 TCGA-EI-6510 TCGA-EI-6511 TCGA-EI-6512 
       19.96        20.91        17.00        18.28        15.85        17.69 
TCGA-EI-6513 TCGA-EI-6514 TCGA-EI-6881 TCGA-EI-6883 TCGA-EI-6917 TCGA-F5-6465 
       16.34        16.31        16.37        11.51        17.46         3.39 
TCGA-F5-6571 TCGA-F5-6702 TCGA-F5-6811 TCGA-F5-6812 TCGA-F5-6814 TCGA-F5-6861 
        0.85         2.17         1.02         0.66         0.53         1.08 
TCGA-F5-6864 TCGA-G5-6235 
        0.46        55.76 

  AMP PEAK  2(1Q32.2) MUTATED AMP PEAK  2(1Q32.2) WILD-TYPE 
                         0.39                          0.46 
  AMP PEAK  2(1Q32.2) MUTATED AMP PEAK  2(1Q32.2) WILD-TYPE 
                       129.27                        126.41 
  AMP PEAK  2(1Q32.2) MUTATED AMP PEAK  2(1Q32.2) WILD-TYPE 
                       12.510                        10.505 
[1] "0.4 - 129.3 (12.5)" "0.5 - 126.4 (10.5)"
                   TCGA-AF-2687                    TCGA-AF-2689 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AF-2692                    TCGA-AF-2693 
  "AMP PEAK  2(1Q32.2) MUTATED" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AF-3400                    TCGA-AF-3911 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AF-3913                    TCGA-AF-4110 
"AMP PEAK  2(1Q32.2) WILD-TYPE"   "AMP PEAK  2(1Q32.2) MUTATED" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"AMP PEAK  2(1Q32.2) WILD-TYPE"   "AMP PEAK  2(1Q32.2) MUTATED" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"AMP PEAK  2(1Q32.2) WILD-TYPE"   "AMP PEAK  2(1Q32.2) MUTATED" 
                   TCGA-AG-3575                    TCGA-AG-3581 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-3582                    TCGA-AG-3583 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-3586                    TCGA-AG-3587 
"AMP PEAK  2(1Q32.2) WILD-TYPE"   "AMP PEAK  2(1Q32.2) MUTATED" 
                   TCGA-AG-3599                    TCGA-AG-3605 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-3726                    TCGA-AG-3727 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-3731                    TCGA-AG-3742 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-3878                    TCGA-AG-3883 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-3896                    TCGA-AG-3999 
"AMP PEAK  2(1Q32.2) WILD-TYPE"   "AMP PEAK  2(1Q32.2) MUTATED" 
                   TCGA-AG-4001                    TCGA-AG-4007 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-4008                    TCGA-AG-4022 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-A002                    TCGA-AG-A008 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-A00C                    TCGA-AG-A00H 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-A00Y                    TCGA-AG-A011 
  "AMP PEAK  2(1Q32.2) MUTATED" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-A014                    TCGA-AG-A015 
"AMP PEAK  2(1Q32.2) WILD-TYPE"   "AMP PEAK  2(1Q32.2) MUTATED" 
                   TCGA-AG-A016                    TCGA-AG-A01J 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-A01L                    TCGA-AG-A01N 
"AMP PEAK  2(1Q32.2) WILD-TYPE"   "AMP PEAK  2(1Q32.2) MUTATED" 
                   TCGA-AG-A01W                    TCGA-AG-A01Y 
  "AMP PEAK  2(1Q32.2) MUTATED" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-A020                    TCGA-AG-A023 
"AMP PEAK  2(1Q32.2) WILD-TYPE"   "AMP PEAK  2(1Q32.2) MUTATED" 
                   TCGA-AG-A025                    TCGA-AG-A026 
"AMP PEAK  2(1Q32.2) WILD-TYPE"   "AMP PEAK  2(1Q32.2) MUTATED" 
                   TCGA-AG-A02G                    TCGA-AG-A02N 
  "AMP PEAK  2(1Q32.2) MUTATED" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-A02X                    TCGA-AG-A032 
"AMP PEAK  2(1Q32.2) WILD-TYPE"   "AMP PEAK  2(1Q32.2) MUTATED" 
                   TCGA-AH-6544                    TCGA-AH-6547 
  "AMP PEAK  2(1Q32.2) MUTATED" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AH-6643                    TCGA-AH-6644 
  "AMP PEAK  2(1Q32.2) MUTATED"   "AMP PEAK  2(1Q32.2) MUTATED" 
                   TCGA-AH-6897                    TCGA-AH-6903 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-BM-6198                    TCGA-CI-6619 
  "AMP PEAK  2(1Q32.2) MUTATED" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-CI-6620                    TCGA-CI-6622 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-CI-6623                    TCGA-CI-6624 
  "AMP PEAK  2(1Q32.2) MUTATED"   "AMP PEAK  2(1Q32.2) MUTATED" 
                   TCGA-CL-4957                    TCGA-CL-5917 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-CL-5918                    TCGA-DC-4745 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-DC-4749                    TCGA-DC-5337 
  "AMP PEAK  2(1Q32.2) MUTATED" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-DC-5869                    TCGA-DC-6154 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-DC-6155                    TCGA-DC-6156 
  "AMP PEAK  2(1Q32.2) MUTATED"   "AMP PEAK  2(1Q32.2) MUTATED" 
                   TCGA-DC-6157                    TCGA-DC-6158 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-DC-6160                    TCGA-DC-6681 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-DC-6682                    TCGA-DC-6683 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-DT-5265                    TCGA-DY-A0XA 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-DY-A1DC                    TCGA-DY-A1DD 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-DY-A1DE                    TCGA-DY-A1DF 
  "AMP PEAK  2(1Q32.2) MUTATED"   "AMP PEAK  2(1Q32.2) MUTATED" 
                   TCGA-DY-A1DG                    TCGA-DY-A1H8 
"AMP PEAK  2(1Q32.2) WILD-TYPE"   "AMP PEAK  2(1Q32.2) MUTATED" 
                   TCGA-EF-5830                    TCGA-EF-5831 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-EI-6506                    TCGA-EI-6507 
  "AMP PEAK  2(1Q32.2) MUTATED" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-EI-6508                    TCGA-EI-6509 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-EI-6510                    TCGA-EI-6511 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-EI-6512                    TCGA-EI-6513 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-EI-6514                    TCGA-EI-6881 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-EI-6882                    TCGA-EI-6883 
  "AMP PEAK  2(1Q32.2) MUTATED" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-EI-6884                    TCGA-EI-6885 
  "AMP PEAK  2(1Q32.2) MUTATED"   "AMP PEAK  2(1Q32.2) MUTATED" 
                   TCGA-EI-6917                    TCGA-EI-7002 
"AMP PEAK  2(1Q32.2) WILD-TYPE"   "AMP PEAK  2(1Q32.2) MUTATED" 
                   TCGA-EI-7004                    TCGA-F5-6465 
  "AMP PEAK  2(1Q32.2) MUTATED" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-F5-6571                    TCGA-F5-6702 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-F5-6810                    TCGA-F5-6811 
  "AMP PEAK  2(1Q32.2) MUTATED" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-F5-6812                    TCGA-F5-6813 
"AMP PEAK  2(1Q32.2) WILD-TYPE"   "AMP PEAK  2(1Q32.2) MUTATED" 
                   TCGA-F5-6814                    TCGA-F5-6861 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-F5-6863                    TCGA-F5-6864 
  "AMP PEAK  2(1Q32.2) MUTATED" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-G5-6233                    TCGA-G5-6235 
  "AMP PEAK  2(1Q32.2) MUTATED" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-G5-6572                    TCGA-G5-6641 
  "AMP PEAK  2(1Q32.2) MUTATED"   "AMP PEAK  2(1Q32.2) MUTATED" 
                   TCGA-AF-2687                    TCGA-AF-2689 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AF-2692                    TCGA-AF-2693 
  "AMP PEAK  2(1Q32.2) MUTATED" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AF-3400                    TCGA-AF-3911 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AF-3913                    TCGA-AF-4110 
"AMP PEAK  2(1Q32.2) WILD-TYPE"   "AMP PEAK  2(1Q32.2) MUTATED" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"AMP PEAK  2(1Q32.2) WILD-TYPE"   "AMP PEAK  2(1Q32.2) MUTATED" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"AMP PEAK  2(1Q32.2) WILD-TYPE"   "AMP PEAK  2(1Q32.2) MUTATED" 
                   TCGA-AG-3575                    TCGA-AG-3581 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-3582                    TCGA-AG-3583 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-3586                    TCGA-AG-3587 
"AMP PEAK  2(1Q32.2) WILD-TYPE"   "AMP PEAK  2(1Q32.2) MUTATED" 
                   TCGA-AG-3599                    TCGA-AG-3605 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-3726                    TCGA-AG-3727 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-3731                    TCGA-AG-3742 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-3878                    TCGA-AG-3883 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-3896                    TCGA-AG-3999 
"AMP PEAK  2(1Q32.2) WILD-TYPE"   "AMP PEAK  2(1Q32.2) MUTATED" 
                   TCGA-AG-4001                    TCGA-AG-4007 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-4008                    TCGA-AG-4022 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-A002                    TCGA-AG-A008 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-A00C                    TCGA-AG-A00H 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-A00Y                    TCGA-AG-A011 
  "AMP PEAK  2(1Q32.2) MUTATED" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-A014                    TCGA-AG-A015 
"AMP PEAK  2(1Q32.2) WILD-TYPE"   "AMP PEAK  2(1Q32.2) MUTATED" 
                   TCGA-AG-A016                    TCGA-AG-A01J 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-A01L                    TCGA-AG-A01N 
"AMP PEAK  2(1Q32.2) WILD-TYPE"   "AMP PEAK  2(1Q32.2) MUTATED" 
                   TCGA-AG-A01W                    TCGA-AG-A01Y 
  "AMP PEAK  2(1Q32.2) MUTATED" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-A020                    TCGA-AG-A023 
"AMP PEAK  2(1Q32.2) WILD-TYPE"   "AMP PEAK  2(1Q32.2) MUTATED" 
                   TCGA-AG-A025                    TCGA-AG-A026 
"AMP PEAK  2(1Q32.2) WILD-TYPE"   "AMP PEAK  2(1Q32.2) MUTATED" 
                   TCGA-AG-A02G                    TCGA-AG-A02N 
  "AMP PEAK  2(1Q32.2) MUTATED" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-A02X                    TCGA-AG-A032 
"AMP PEAK  2(1Q32.2) WILD-TYPE"   "AMP PEAK  2(1Q32.2) MUTATED" 
                   TCGA-AH-6544                    TCGA-AH-6547 
  "AMP PEAK  2(1Q32.2) MUTATED" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AH-6643                    TCGA-AH-6644 
  "AMP PEAK  2(1Q32.2) MUTATED"   "AMP PEAK  2(1Q32.2) MUTATED" 
                   TCGA-AH-6897                    TCGA-AH-6903 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-BM-6198                    TCGA-CI-6619 
  "AMP PEAK  2(1Q32.2) MUTATED" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-CI-6620                    TCGA-CI-6622 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-CI-6623                    TCGA-CI-6624 
  "AMP PEAK  2(1Q32.2) MUTATED"   "AMP PEAK  2(1Q32.2) MUTATED" 
                   TCGA-CL-4957                    TCGA-CL-5917 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-CL-5918                    TCGA-DC-4745 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-DC-4749                    TCGA-DC-5337 
  "AMP PEAK  2(1Q32.2) MUTATED" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-DC-5869                    TCGA-DC-6154 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-DC-6155                    TCGA-DC-6156 
  "AMP PEAK  2(1Q32.2) MUTATED"   "AMP PEAK  2(1Q32.2) MUTATED" 
                   TCGA-DC-6157                    TCGA-DC-6158 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-DC-6160                    TCGA-DC-6681 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-DC-6682                    TCGA-DC-6683 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-DT-5265                    TCGA-DY-A0XA 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-DY-A1DC                    TCGA-DY-A1DD 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-DY-A1DE                    TCGA-DY-A1DF 
  "AMP PEAK  2(1Q32.2) MUTATED"   "AMP PEAK  2(1Q32.2) MUTATED" 
                   TCGA-DY-A1DG                    TCGA-DY-A1H8 
"AMP PEAK  2(1Q32.2) WILD-TYPE"   "AMP PEAK  2(1Q32.2) MUTATED" 
                   TCGA-EF-5830                    TCGA-EF-5831 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-EI-6506                    TCGA-EI-6507 
  "AMP PEAK  2(1Q32.2) MUTATED" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-EI-6508                    TCGA-EI-6509 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-EI-6510                    TCGA-EI-6511 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-EI-6512                    TCGA-EI-6513 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-EI-6514                    TCGA-EI-6881 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-EI-6882                    TCGA-EI-6883 
  "AMP PEAK  2(1Q32.2) MUTATED" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-EI-6884                    TCGA-EI-6885 
  "AMP PEAK  2(1Q32.2) MUTATED"   "AMP PEAK  2(1Q32.2) MUTATED" 
                   TCGA-EI-6917                    TCGA-EI-7002 
"AMP PEAK  2(1Q32.2) WILD-TYPE"   "AMP PEAK  2(1Q32.2) MUTATED" 
                   TCGA-EI-7004                    TCGA-F5-6465 
  "AMP PEAK  2(1Q32.2) MUTATED" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-F5-6571                    TCGA-F5-6702 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-F5-6810                    TCGA-F5-6811 
  "AMP PEAK  2(1Q32.2) MUTATED" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-F5-6812                    TCGA-F5-6813 
"AMP PEAK  2(1Q32.2) WILD-TYPE"   "AMP PEAK  2(1Q32.2) MUTATED" 
                   TCGA-F5-6814                    TCGA-F5-6861 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-F5-6863                    TCGA-F5-6864 
  "AMP PEAK  2(1Q32.2) MUTATED" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-G5-6233                    TCGA-G5-6235 
  "AMP PEAK  2(1Q32.2) MUTATED" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-G5-6572                    TCGA-G5-6641 
  "AMP PEAK  2(1Q32.2) MUTATED"   "AMP PEAK  2(1Q32.2) MUTATED" 
                   TCGA-AF-2687                    TCGA-AF-2689 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AF-2692                    TCGA-AF-2693 
  "AMP PEAK  2(1Q32.2) MUTATED" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AF-3400                    TCGA-AF-3911 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AF-3913                    TCGA-AF-4110 
"AMP PEAK  2(1Q32.2) WILD-TYPE"   "AMP PEAK  2(1Q32.2) MUTATED" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"AMP PEAK  2(1Q32.2) WILD-TYPE"   "AMP PEAK  2(1Q32.2) MUTATED" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"AMP PEAK  2(1Q32.2) WILD-TYPE"   "AMP PEAK  2(1Q32.2) MUTATED" 
                   TCGA-AG-3575                    TCGA-AG-3581 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-3582                    TCGA-AG-3583 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-3586                    TCGA-AG-3587 
"AMP PEAK  2(1Q32.2) WILD-TYPE"   "AMP PEAK  2(1Q32.2) MUTATED" 
                   TCGA-AG-3599                    TCGA-AG-3605 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-3726                    TCGA-AG-3727 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-3731                    TCGA-AG-3742 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-3878                    TCGA-AG-3883 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-3896                    TCGA-AG-3999 
"AMP PEAK  2(1Q32.2) WILD-TYPE"   "AMP PEAK  2(1Q32.2) MUTATED" 
                   TCGA-AG-4001                    TCGA-AG-4007 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-4008                    TCGA-AG-4022 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-A002                    TCGA-AG-A008 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-A00C                    TCGA-AG-A00H 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-A00Y                    TCGA-AG-A011 
  "AMP PEAK  2(1Q32.2) MUTATED" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-A014                    TCGA-AG-A015 
"AMP PEAK  2(1Q32.2) WILD-TYPE"   "AMP PEAK  2(1Q32.2) MUTATED" 
                   TCGA-AG-A016                    TCGA-AG-A01J 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-A01L                    TCGA-AG-A01N 
"AMP PEAK  2(1Q32.2) WILD-TYPE"   "AMP PEAK  2(1Q32.2) MUTATED" 
                   TCGA-AG-A01W                    TCGA-AG-A01Y 
  "AMP PEAK  2(1Q32.2) MUTATED" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-A020                    TCGA-AG-A023 
"AMP PEAK  2(1Q32.2) WILD-TYPE"   "AMP PEAK  2(1Q32.2) MUTATED" 
                   TCGA-AG-A025                    TCGA-AG-A026 
"AMP PEAK  2(1Q32.2) WILD-TYPE"   "AMP PEAK  2(1Q32.2) MUTATED" 
                   TCGA-AG-A02G                    TCGA-AG-A02N 
  "AMP PEAK  2(1Q32.2) MUTATED" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-A02X                    TCGA-AG-A032 
"AMP PEAK  2(1Q32.2) WILD-TYPE"   "AMP PEAK  2(1Q32.2) MUTATED" 
                   TCGA-AH-6544                    TCGA-AH-6547 
  "AMP PEAK  2(1Q32.2) MUTATED" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AH-6643                    TCGA-AH-6644 
  "AMP PEAK  2(1Q32.2) MUTATED"   "AMP PEAK  2(1Q32.2) MUTATED" 
                   TCGA-AH-6897                    TCGA-AH-6903 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-BM-6198                    TCGA-CI-6619 
  "AMP PEAK  2(1Q32.2) MUTATED" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-CI-6620                    TCGA-CI-6622 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-CI-6623                    TCGA-CI-6624 
  "AMP PEAK  2(1Q32.2) MUTATED"   "AMP PEAK  2(1Q32.2) MUTATED" 
                   TCGA-CL-4957                    TCGA-CL-5917 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-CL-5918                    TCGA-DC-4745 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-DC-4749                    TCGA-DC-5337 
  "AMP PEAK  2(1Q32.2) MUTATED" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-DC-5869                    TCGA-DC-6154 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-DC-6155                    TCGA-DC-6156 
  "AMP PEAK  2(1Q32.2) MUTATED"   "AMP PEAK  2(1Q32.2) MUTATED" 
                   TCGA-DC-6157                    TCGA-DC-6158 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-DC-6160                    TCGA-DC-6681 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-DC-6682                    TCGA-DC-6683 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-DT-5265                    TCGA-DY-A0XA 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-DY-A1DC                    TCGA-DY-A1DD 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-DY-A1DE                    TCGA-DY-A1DF 
  "AMP PEAK  2(1Q32.2) MUTATED"   "AMP PEAK  2(1Q32.2) MUTATED" 
                   TCGA-DY-A1DG                    TCGA-DY-A1H8 
"AMP PEAK  2(1Q32.2) WILD-TYPE"   "AMP PEAK  2(1Q32.2) MUTATED" 
                   TCGA-EF-5830                    TCGA-EF-5831 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-EI-6506                    TCGA-EI-6507 
  "AMP PEAK  2(1Q32.2) MUTATED" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-EI-6508                    TCGA-EI-6509 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-EI-6510                    TCGA-EI-6511 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-EI-6512                    TCGA-EI-6513 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-EI-6514                    TCGA-EI-6881 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-EI-6882                    TCGA-EI-6883 
  "AMP PEAK  2(1Q32.2) MUTATED" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-EI-6884                    TCGA-EI-6885 
  "AMP PEAK  2(1Q32.2) MUTATED"   "AMP PEAK  2(1Q32.2) MUTATED" 
                   TCGA-EI-6917                    TCGA-EI-7002 
"AMP PEAK  2(1Q32.2) WILD-TYPE"   "AMP PEAK  2(1Q32.2) MUTATED" 
                   TCGA-EI-7004                    TCGA-F5-6465 
  "AMP PEAK  2(1Q32.2) MUTATED" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-F5-6571                    TCGA-F5-6702 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-F5-6810                    TCGA-F5-6811 
  "AMP PEAK  2(1Q32.2) MUTATED" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-F5-6812                    TCGA-F5-6813 
"AMP PEAK  2(1Q32.2) WILD-TYPE"   "AMP PEAK  2(1Q32.2) MUTATED" 
                   TCGA-F5-6814                    TCGA-F5-6861 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-F5-6863                    TCGA-F5-6864 
  "AMP PEAK  2(1Q32.2) MUTATED" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-G5-6233                    TCGA-G5-6235 
  "AMP PEAK  2(1Q32.2) MUTATED" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-G5-6572                    TCGA-G5-6641 
  "AMP PEAK  2(1Q32.2) MUTATED"   "AMP PEAK  2(1Q32.2) MUTATED" 
[1] "hr=" "2.3"
D2V2, continuous
                               vv
clus                            STAGE I STAGE II STAGE IIA STAGE IIB STAGE IIC
  AMP PEAK  2(1Q32.2) MUTATED         6        2        12         0         1
  AMP PEAK  2(1Q32.2) WILD-TYPE      24        6        26         2         1
                               vv
clus                            STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  AMP PEAK  2(1Q32.2) MUTATED           1          4          4          6
  AMP PEAK  2(1Q32.2) WILD-TYPE         4          5         19          8
                               vv
clus                            STAGE IV STAGE IVA
  AMP PEAK  2(1Q32.2) MUTATED          6         3
  AMP PEAK  2(1Q32.2) WILD-TYPE       11         6
D2V3, multiclass
                               vv
clus                            T1 T2 T3 T4
  AMP PEAK  2(1Q32.2) MUTATED    3  8 27  9
  AMP PEAK  2(1Q32.2) WILD-TYPE  6 21 82  5
D2V4, multiclass
    clus
vv   AMP PEAK  2(1Q32.2) MUTATED AMP PEAK  2(1Q32.2) WILD-TYPE
  T1                           3                             6
  T2                           8                            21
  T3                          27                            82
  T4                           9                             5
                               vv
clus                            N0 N1 N2
  AMP PEAK  2(1Q32.2) MUTATED   21 12 13
  AMP PEAK  2(1Q32.2) WILD-TYPE 62 33 19
D2V5, multiclass
    clus
vv   AMP PEAK  2(1Q32.2) MUTATED AMP PEAK  2(1Q32.2) WILD-TYPE
  N0                          21                            62
  N1                          12                            33
  N2                          13                            19
                               vv
clus                            M0 M1 M1A MX
  AMP PEAK  2(1Q32.2) MUTATED   33  6   1  6
  AMP PEAK  2(1Q32.2) WILD-TYPE 90 16   1  7
D2V6, multiclass
     clus
vv    AMP PEAK  2(1Q32.2) MUTATED AMP PEAK  2(1Q32.2) WILD-TYPE
  M0                           33                            90
  M1                            6                            16
  M1A                           1                             1
  MX                            6                             7
D2V7, binary
                               cls
clus                             0  1
  AMP PEAK  2(1Q32.2) MUTATED   22 26
  AMP PEAK  2(1Q32.2) WILD-TYPE 52 62
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  2(1Q32.2) MUTATED     22   26
  AMP PEAK  2(1Q32.2) WILD-TYPE   52   62
        clus
vv       AMP PEAK  2(1Q32.2) MUTATED AMP PEAK  2(1Q32.2) WILD-TYPE
  FEMALE                          22                            52
  MALE                            26                            62
D2V8, binary
                               cls
clus                              0   1
  AMP PEAK  2(1Q32.2) MUTATED    41   4
  AMP PEAK  2(1Q32.2) WILD-TYPE 102   9
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  2(1Q32.2) MUTATED     41    4
  AMP PEAK  2(1Q32.2) WILD-TYPE  102    9
                                clus
vv                               AMP PEAK  2(1Q32.2) MUTATED
  RECTAL ADENOCARCINOMA                                   41
  RECTAL MUCINOUS ADENOCARCINOMA                           4
                                clus
vv                               AMP PEAK  2(1Q32.2) WILD-TYPE
  RECTAL ADENOCARCINOMA                                    102
  RECTAL MUCINOUS ADENOCARCINOMA                             9
D2V9, binary
                               cls
clus                              0   1
  AMP PEAK  2(1Q32.2) MUTATED     3  45
  AMP PEAK  2(1Q32.2) WILD-TYPE   3 111
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  2(1Q32.2) MUTATED      3   45
  AMP PEAK  2(1Q32.2) WILD-TYPE    3  111
     clus
vv    AMP PEAK  2(1Q32.2) MUTATED AMP PEAK  2(1Q32.2) WILD-TYPE
  NO                            3                             3
  YES                          45                           111
                               vv
clus                            R0 R1 R2 RX
  AMP PEAK  2(1Q32.2) MUTATED   32  1  3  0
  AMP PEAK  2(1Q32.2) WILD-TYPE 89  1  9  3
D2V10, multiclass
    clus
vv   AMP PEAK  2(1Q32.2) MUTATED AMP PEAK  2(1Q32.2) WILD-TYPE
  R0                          32                            89
  R1                           1                             1
  R2                           3                             9
  RX                           0                             3
D2V11, continuous

Clustering(3) Variable = AMP PEAK  3(5Q22.3) MUTATION ANALYSIS
D3V1, survival
                               sevent
clus2                            0  1
  AMP PEAK  3(5Q22.3) MUTATED   18  0
  AMP PEAK  3(5Q22.3) WILD-TYPE 99 13
  AMP PEAK  3(5Q22.3) MUTATED AMP PEAK  3(5Q22.3) WILD-TYPE 
                           18                           112 
  AMP PEAK  3(5Q22.3) MUTATED AMP PEAK  3(5Q22.3) WILD-TYPE 
                            0                            13 
$`AMP PEAK  3(5Q22.3) MUTATED`
TCGA-AF-6655 TCGA-AG-3896 TCGA-AG-4007 TCGA-AG-A00H TCGA-AG-A014 TCGA-AG-A01L 
       11.67         1.02         1.02        25.94        15.91        12.00 
TCGA-AG-A01N TCGA-AG-A032 TCGA-AH-6544 TCGA-AH-6643 TCGA-AH-6644 TCGA-DC-6683 
       12.00        38.01         0.49         0.69         0.72        10.06 
TCGA-EI-6506 TCGA-EI-6514 TCGA-EI-6883 TCGA-EI-7002 TCGA-F5-6465 TCGA-F5-6811 
       20.55        16.31        11.51        11.97         3.39         1.02 

$`AMP PEAK  3(5Q22.3) WILD-TYPE`
TCGA-AF-2687 TCGA-AF-2689 TCGA-AF-2690 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-2693 
       24.13        17.95        17.23        10.62        13.55        19.10 
TCGA-AF-3400 TCGA-AF-3911 TCGA-AF-3913 TCGA-AF-4110 TCGA-AF-5654 TCGA-AF-6136 
       12.72        25.02        10.39        14.50         8.45        15.35 
TCGA-AF-6672 TCGA-AG-3575 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3586 
       10.39        12.00         1.02         1.02         2.01         1.02 
TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3605 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3731 
        1.02         0.99         0.99         7.96         0.95         1.02 
TCGA-AG-3742 TCGA-AG-3878 TCGA-AG-3883 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 
        0.99         0.99         1.02         0.92         1.02         0.99 
TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4008 TCGA-AG-4022 TCGA-AG-A002 
        0.99         1.02         1.02         1.02         0.99        20.94 
TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A015 TCGA-AG-A016 
       13.91         6.02        23.01        17.03        13.02         1.02 
TCGA-AG-A01J TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A023 TCGA-AG-A025 
        1.02        70.03        63.98        10.98        51.98        49.94 
TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AH-6547 TCGA-AH-6897 
        1.94        38.93        61.94        40.96         1.45         4.60 
TCGA-AH-6903 TCGA-BM-6198 TCGA-CI-6619 TCGA-CI-6620 TCGA-CI-6622 TCGA-CI-6623 
        1.81        10.19         6.02         6.02         6.94         9.37 
TCGA-CI-6624 TCGA-CL-4957 TCGA-CL-5917 TCGA-CL-5918 TCGA-DC-4745 TCGA-DC-4749 
        4.70        13.97        60.00         7.99        10.98        11.01 
TCGA-DC-5337 TCGA-DC-5869 TCGA-DC-6154 TCGA-DC-6155 TCGA-DC-6156 TCGA-DC-6157 
       15.02        12.99        12.00        14.01        15.02        36.00 
TCGA-DC-6158 TCGA-DC-6160 TCGA-DC-6681 TCGA-DC-6682 TCGA-DT-5265 TCGA-DY-A0XA 
        6.97        30.05        12.95        13.02         5.29       126.41 
TCGA-DY-A1DC TCGA-DY-A1DD TCGA-DY-A1DE TCGA-DY-A1DF TCGA-DY-A1DG TCGA-DY-A1H8 
       41.33        57.24       129.27        24.13        51.48        32.58 
TCGA-EF-5830 TCGA-EF-5831 TCGA-EI-6507 TCGA-EI-6508 TCGA-EI-6509 TCGA-EI-6510 
        0.49         2.40        19.96        20.91        17.00        18.28 
TCGA-EI-6511 TCGA-EI-6512 TCGA-EI-6513 TCGA-EI-6881 TCGA-EI-6882 TCGA-EI-6884 
       15.85        17.69        16.34        16.37         8.61        10.78 
TCGA-EI-6885 TCGA-EI-6917 TCGA-EI-7004 TCGA-F5-6571 TCGA-F5-6702 TCGA-F5-6810 
       13.61        17.46         8.45         0.85         2.17         0.39 
TCGA-F5-6812 TCGA-F5-6813 TCGA-F5-6814 TCGA-F5-6861 TCGA-F5-6863 TCGA-F5-6864 
        0.66         0.69         0.53         1.08         0.76         0.46 
TCGA-G5-6233 TCGA-G5-6235 TCGA-G5-6572 TCGA-G5-6641 
       18.25        55.76        47.08        26.43 

  AMP PEAK  3(5Q22.3) MUTATED AMP PEAK  3(5Q22.3) WILD-TYPE 
                         0.49                          0.39 
  AMP PEAK  3(5Q22.3) MUTATED AMP PEAK  3(5Q22.3) WILD-TYPE 
                        38.01                        129.27 
  AMP PEAK  3(5Q22.3) MUTATED AMP PEAK  3(5Q22.3) WILD-TYPE 
                        11.59                         10.98 
[1] "0.5 - 38.0 (11.6)"  "0.4 - 129.3 (11.0)"
                   TCGA-AF-2687                    TCGA-AF-2689 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AF-2692                    TCGA-AF-2693 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AF-3400                    TCGA-AF-3911 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AF-3913                    TCGA-AF-4110 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AF-6655                    TCGA-AF-6672 
  "AMP PEAK  3(5Q22.3) MUTATED" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-3575                    TCGA-AG-3581 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-3582                    TCGA-AG-3583 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-3586                    TCGA-AG-3587 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-3599                    TCGA-AG-3605 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-3726                    TCGA-AG-3727 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-3731                    TCGA-AG-3742 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-3878                    TCGA-AG-3883 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-3896                    TCGA-AG-3999 
  "AMP PEAK  3(5Q22.3) MUTATED" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-4001                    TCGA-AG-4007 
"AMP PEAK  3(5Q22.3) WILD-TYPE"   "AMP PEAK  3(5Q22.3) MUTATED" 
                   TCGA-AG-4008                    TCGA-AG-4022 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-A002                    TCGA-AG-A008 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-A00C                    TCGA-AG-A00H 
"AMP PEAK  3(5Q22.3) WILD-TYPE"   "AMP PEAK  3(5Q22.3) MUTATED" 
                   TCGA-AG-A00Y                    TCGA-AG-A011 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-A014                    TCGA-AG-A015 
  "AMP PEAK  3(5Q22.3) MUTATED" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-A016                    TCGA-AG-A01J 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-A01L                    TCGA-AG-A01N 
  "AMP PEAK  3(5Q22.3) MUTATED"   "AMP PEAK  3(5Q22.3) MUTATED" 
                   TCGA-AG-A01W                    TCGA-AG-A01Y 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-A020                    TCGA-AG-A023 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-A025                    TCGA-AG-A026 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-A02G                    TCGA-AG-A02N 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-A02X                    TCGA-AG-A032 
"AMP PEAK  3(5Q22.3) WILD-TYPE"   "AMP PEAK  3(5Q22.3) MUTATED" 
                   TCGA-AH-6544                    TCGA-AH-6547 
  "AMP PEAK  3(5Q22.3) MUTATED" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AH-6643                    TCGA-AH-6644 
  "AMP PEAK  3(5Q22.3) MUTATED"   "AMP PEAK  3(5Q22.3) MUTATED" 
                   TCGA-AH-6897                    TCGA-AH-6903 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-BM-6198                    TCGA-CI-6619 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-CI-6620                    TCGA-CI-6622 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-CI-6623                    TCGA-CI-6624 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-CL-4957                    TCGA-CL-5917 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-CL-5918                    TCGA-DC-4745 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-DC-4749                    TCGA-DC-5337 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-DC-5869                    TCGA-DC-6154 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-DC-6155                    TCGA-DC-6156 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-DC-6157                    TCGA-DC-6158 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-DC-6160                    TCGA-DC-6681 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-DC-6682                    TCGA-DC-6683 
"AMP PEAK  3(5Q22.3) WILD-TYPE"   "AMP PEAK  3(5Q22.3) MUTATED" 
                   TCGA-DT-5265                    TCGA-DY-A0XA 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-DY-A1DC                    TCGA-DY-A1DD 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-DY-A1DE                    TCGA-DY-A1DF 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-DY-A1DG                    TCGA-DY-A1H8 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-EF-5830                    TCGA-EF-5831 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-EI-6506                    TCGA-EI-6507 
  "AMP PEAK  3(5Q22.3) MUTATED" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-EI-6508                    TCGA-EI-6509 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-EI-6510                    TCGA-EI-6511 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-EI-6512                    TCGA-EI-6513 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-EI-6514                    TCGA-EI-6881 
  "AMP PEAK  3(5Q22.3) MUTATED" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-EI-6882                    TCGA-EI-6883 
"AMP PEAK  3(5Q22.3) WILD-TYPE"   "AMP PEAK  3(5Q22.3) MUTATED" 
                   TCGA-EI-6884                    TCGA-EI-6885 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-EI-6917                    TCGA-EI-7002 
"AMP PEAK  3(5Q22.3) WILD-TYPE"   "AMP PEAK  3(5Q22.3) MUTATED" 
                   TCGA-EI-7004                    TCGA-F5-6465 
"AMP PEAK  3(5Q22.3) WILD-TYPE"   "AMP PEAK  3(5Q22.3) MUTATED" 
                   TCGA-F5-6571                    TCGA-F5-6702 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-F5-6810                    TCGA-F5-6811 
"AMP PEAK  3(5Q22.3) WILD-TYPE"   "AMP PEAK  3(5Q22.3) MUTATED" 
                   TCGA-F5-6812                    TCGA-F5-6813 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-F5-6814                    TCGA-F5-6861 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-F5-6863                    TCGA-F5-6864 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-G5-6233                    TCGA-G5-6235 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-G5-6572                    TCGA-G5-6641 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AF-2687                    TCGA-AF-2689 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AF-2692                    TCGA-AF-2693 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AF-3400                    TCGA-AF-3911 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AF-3913                    TCGA-AF-4110 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AF-6655                    TCGA-AF-6672 
  "AMP PEAK  3(5Q22.3) MUTATED" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-3575                    TCGA-AG-3581 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-3582                    TCGA-AG-3583 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-3586                    TCGA-AG-3587 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-3599                    TCGA-AG-3605 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-3726                    TCGA-AG-3727 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-3731                    TCGA-AG-3742 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-3878                    TCGA-AG-3883 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-3896                    TCGA-AG-3999 
  "AMP PEAK  3(5Q22.3) MUTATED" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-4001                    TCGA-AG-4007 
"AMP PEAK  3(5Q22.3) WILD-TYPE"   "AMP PEAK  3(5Q22.3) MUTATED" 
                   TCGA-AG-4008                    TCGA-AG-4022 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-A002                    TCGA-AG-A008 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-A00C                    TCGA-AG-A00H 
"AMP PEAK  3(5Q22.3) WILD-TYPE"   "AMP PEAK  3(5Q22.3) MUTATED" 
                   TCGA-AG-A00Y                    TCGA-AG-A011 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-A014                    TCGA-AG-A015 
  "AMP PEAK  3(5Q22.3) MUTATED" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-A016                    TCGA-AG-A01J 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-A01L                    TCGA-AG-A01N 
  "AMP PEAK  3(5Q22.3) MUTATED"   "AMP PEAK  3(5Q22.3) MUTATED" 
                   TCGA-AG-A01W                    TCGA-AG-A01Y 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-A020                    TCGA-AG-A023 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-A025                    TCGA-AG-A026 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-A02G                    TCGA-AG-A02N 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-A02X                    TCGA-AG-A032 
"AMP PEAK  3(5Q22.3) WILD-TYPE"   "AMP PEAK  3(5Q22.3) MUTATED" 
                   TCGA-AH-6544                    TCGA-AH-6547 
  "AMP PEAK  3(5Q22.3) MUTATED" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AH-6643                    TCGA-AH-6644 
  "AMP PEAK  3(5Q22.3) MUTATED"   "AMP PEAK  3(5Q22.3) MUTATED" 
                   TCGA-AH-6897                    TCGA-AH-6903 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-BM-6198                    TCGA-CI-6619 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-CI-6620                    TCGA-CI-6622 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-CI-6623                    TCGA-CI-6624 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-CL-4957                    TCGA-CL-5917 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-CL-5918                    TCGA-DC-4745 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-DC-4749                    TCGA-DC-5337 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-DC-5869                    TCGA-DC-6154 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-DC-6155                    TCGA-DC-6156 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-DC-6157                    TCGA-DC-6158 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-DC-6160                    TCGA-DC-6681 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-DC-6682                    TCGA-DC-6683 
"AMP PEAK  3(5Q22.3) WILD-TYPE"   "AMP PEAK  3(5Q22.3) MUTATED" 
                   TCGA-DT-5265                    TCGA-DY-A0XA 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-DY-A1DC                    TCGA-DY-A1DD 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-DY-A1DE                    TCGA-DY-A1DF 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-DY-A1DG                    TCGA-DY-A1H8 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-EF-5830                    TCGA-EF-5831 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-EI-6506                    TCGA-EI-6507 
  "AMP PEAK  3(5Q22.3) MUTATED" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-EI-6508                    TCGA-EI-6509 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-EI-6510                    TCGA-EI-6511 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-EI-6512                    TCGA-EI-6513 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-EI-6514                    TCGA-EI-6881 
  "AMP PEAK  3(5Q22.3) MUTATED" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-EI-6882                    TCGA-EI-6883 
"AMP PEAK  3(5Q22.3) WILD-TYPE"   "AMP PEAK  3(5Q22.3) MUTATED" 
                   TCGA-EI-6884                    TCGA-EI-6885 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-EI-6917                    TCGA-EI-7002 
"AMP PEAK  3(5Q22.3) WILD-TYPE"   "AMP PEAK  3(5Q22.3) MUTATED" 
                   TCGA-EI-7004                    TCGA-F5-6465 
"AMP PEAK  3(5Q22.3) WILD-TYPE"   "AMP PEAK  3(5Q22.3) MUTATED" 
                   TCGA-F5-6571                    TCGA-F5-6702 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-F5-6810                    TCGA-F5-6811 
"AMP PEAK  3(5Q22.3) WILD-TYPE"   "AMP PEAK  3(5Q22.3) MUTATED" 
                   TCGA-F5-6812                    TCGA-F5-6813 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-F5-6814                    TCGA-F5-6861 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-F5-6863                    TCGA-F5-6864 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-G5-6233                    TCGA-G5-6235 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-G5-6572                    TCGA-G5-6641 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AF-2687                    TCGA-AF-2689 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AF-2692                    TCGA-AF-2693 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AF-3400                    TCGA-AF-3911 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AF-3913                    TCGA-AF-4110 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AF-6655                    TCGA-AF-6672 
  "AMP PEAK  3(5Q22.3) MUTATED" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-3575                    TCGA-AG-3581 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-3582                    TCGA-AG-3583 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-3586                    TCGA-AG-3587 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-3599                    TCGA-AG-3605 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-3726                    TCGA-AG-3727 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-3731                    TCGA-AG-3742 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-3878                    TCGA-AG-3883 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-3896                    TCGA-AG-3999 
  "AMP PEAK  3(5Q22.3) MUTATED" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-4001                    TCGA-AG-4007 
"AMP PEAK  3(5Q22.3) WILD-TYPE"   "AMP PEAK  3(5Q22.3) MUTATED" 
                   TCGA-AG-4008                    TCGA-AG-4022 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-A002                    TCGA-AG-A008 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-A00C                    TCGA-AG-A00H 
"AMP PEAK  3(5Q22.3) WILD-TYPE"   "AMP PEAK  3(5Q22.3) MUTATED" 
                   TCGA-AG-A00Y                    TCGA-AG-A011 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-A014                    TCGA-AG-A015 
  "AMP PEAK  3(5Q22.3) MUTATED" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-A016                    TCGA-AG-A01J 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-A01L                    TCGA-AG-A01N 
  "AMP PEAK  3(5Q22.3) MUTATED"   "AMP PEAK  3(5Q22.3) MUTATED" 
                   TCGA-AG-A01W                    TCGA-AG-A01Y 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-A020                    TCGA-AG-A023 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-A025                    TCGA-AG-A026 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-A02G                    TCGA-AG-A02N 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-A02X                    TCGA-AG-A032 
"AMP PEAK  3(5Q22.3) WILD-TYPE"   "AMP PEAK  3(5Q22.3) MUTATED" 
                   TCGA-AH-6544                    TCGA-AH-6547 
  "AMP PEAK  3(5Q22.3) MUTATED" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AH-6643                    TCGA-AH-6644 
  "AMP PEAK  3(5Q22.3) MUTATED"   "AMP PEAK  3(5Q22.3) MUTATED" 
                   TCGA-AH-6897                    TCGA-AH-6903 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-BM-6198                    TCGA-CI-6619 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-CI-6620                    TCGA-CI-6622 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-CI-6623                    TCGA-CI-6624 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-CL-4957                    TCGA-CL-5917 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-CL-5918                    TCGA-DC-4745 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-DC-4749                    TCGA-DC-5337 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-DC-5869                    TCGA-DC-6154 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-DC-6155                    TCGA-DC-6156 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-DC-6157                    TCGA-DC-6158 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-DC-6160                    TCGA-DC-6681 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-DC-6682                    TCGA-DC-6683 
"AMP PEAK  3(5Q22.3) WILD-TYPE"   "AMP PEAK  3(5Q22.3) MUTATED" 
                   TCGA-DT-5265                    TCGA-DY-A0XA 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-DY-A1DC                    TCGA-DY-A1DD 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-DY-A1DE                    TCGA-DY-A1DF 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-DY-A1DG                    TCGA-DY-A1H8 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-EF-5830                    TCGA-EF-5831 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-EI-6506                    TCGA-EI-6507 
  "AMP PEAK  3(5Q22.3) MUTATED" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-EI-6508                    TCGA-EI-6509 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-EI-6510                    TCGA-EI-6511 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-EI-6512                    TCGA-EI-6513 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-EI-6514                    TCGA-EI-6881 
  "AMP PEAK  3(5Q22.3) MUTATED" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-EI-6882                    TCGA-EI-6883 
"AMP PEAK  3(5Q22.3) WILD-TYPE"   "AMP PEAK  3(5Q22.3) MUTATED" 
                   TCGA-EI-6884                    TCGA-EI-6885 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-EI-6917                    TCGA-EI-7002 
"AMP PEAK  3(5Q22.3) WILD-TYPE"   "AMP PEAK  3(5Q22.3) MUTATED" 
                   TCGA-EI-7004                    TCGA-F5-6465 
"AMP PEAK  3(5Q22.3) WILD-TYPE"   "AMP PEAK  3(5Q22.3) MUTATED" 
                   TCGA-F5-6571                    TCGA-F5-6702 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-F5-6810                    TCGA-F5-6811 
"AMP PEAK  3(5Q22.3) WILD-TYPE"   "AMP PEAK  3(5Q22.3) MUTATED" 
                   TCGA-F5-6812                    TCGA-F5-6813 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-F5-6814                    TCGA-F5-6861 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-F5-6863                    TCGA-F5-6864 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-G5-6233                    TCGA-G5-6235 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-G5-6572                    TCGA-G5-6641 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
[1] "hr="   "8e+07"
D3V2, continuous
                               vv
clus                            STAGE I STAGE II STAGE IIA STAGE IIB STAGE IIC
  AMP PEAK  3(5Q22.3) MUTATED         2        0         5         0         1
  AMP PEAK  3(5Q22.3) WILD-TYPE      28        8        33         2         1
                               vv
clus                            STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  AMP PEAK  3(5Q22.3) MUTATED           0          1          4          2
  AMP PEAK  3(5Q22.3) WILD-TYPE         5          8         19         12
                               vv
clus                            STAGE IV STAGE IVA
  AMP PEAK  3(5Q22.3) MUTATED          3         0
  AMP PEAK  3(5Q22.3) WILD-TYPE       14         9
D3V3, multiclass
                               vv
clus                            T1 T2 T3 T4
  AMP PEAK  3(5Q22.3) MUTATED    0  4 15  1
  AMP PEAK  3(5Q22.3) WILD-TYPE  9 25 94 13
D3V4, multiclass
    clus
vv   AMP PEAK  3(5Q22.3) MUTATED AMP PEAK  3(5Q22.3) WILD-TYPE
  T1                           0                             9
  T2                           4                            25
  T3                          15                            94
  T4                           1                            13
                               vv
clus                            N0 N1 N2
  AMP PEAK  3(5Q22.3) MUTATED    9  6  4
  AMP PEAK  3(5Q22.3) WILD-TYPE 74 39 28
D3V5, multiclass
    clus
vv   AMP PEAK  3(5Q22.3) MUTATED AMP PEAK  3(5Q22.3) WILD-TYPE
  N0                           9                            74
  N1                           6                            39
  N2                           4                            28
                               vv
clus                             M0  M1 M1A  MX
  AMP PEAK  3(5Q22.3) MUTATED    15   4   0   1
  AMP PEAK  3(5Q22.3) WILD-TYPE 108  18   2  12
D3V6, multiclass
     clus
vv    AMP PEAK  3(5Q22.3) MUTATED AMP PEAK  3(5Q22.3) WILD-TYPE
  M0                           15                           108
  M1                            4                            18
  M1A                           0                             2
  MX                            1                            12
D3V7, binary
                               cls
clus                             0  1
  AMP PEAK  3(5Q22.3) MUTATED    8 12
  AMP PEAK  3(5Q22.3) WILD-TYPE 66 76
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  3(5Q22.3) MUTATED      8   12
  AMP PEAK  3(5Q22.3) WILD-TYPE   66   76
        clus
vv       AMP PEAK  3(5Q22.3) MUTATED AMP PEAK  3(5Q22.3) WILD-TYPE
  FEMALE                           8                            66
  MALE                            12                            76
D3V8, binary
                               cls
clus                              0   1
  AMP PEAK  3(5Q22.3) MUTATED    20   0
  AMP PEAK  3(5Q22.3) WILD-TYPE 123  13
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  3(5Q22.3) MUTATED     20    0
  AMP PEAK  3(5Q22.3) WILD-TYPE  123   13
                                clus
vv                               AMP PEAK  3(5Q22.3) MUTATED
  RECTAL ADENOCARCINOMA                                   20
  RECTAL MUCINOUS ADENOCARCINOMA                           0
                                clus
vv                               AMP PEAK  3(5Q22.3) WILD-TYPE
  RECTAL ADENOCARCINOMA                                    123
  RECTAL MUCINOUS ADENOCARCINOMA                            13
D3V9, binary
                               cls
clus                              0   1
  AMP PEAK  3(5Q22.3) MUTATED     0  20
  AMP PEAK  3(5Q22.3) WILD-TYPE   6 136
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  3(5Q22.3) MUTATED      0   20
  AMP PEAK  3(5Q22.3) WILD-TYPE    6  136
     clus
vv    AMP PEAK  3(5Q22.3) MUTATED AMP PEAK  3(5Q22.3) WILD-TYPE
  NO                            0                             6
  YES                          20                           136
                               vv
clus                             R0  R1  R2  RX
  AMP PEAK  3(5Q22.3) MUTATED    15   0   2   0
  AMP PEAK  3(5Q22.3) WILD-TYPE 106   2  10   3
D3V10, multiclass
    clus
vv   AMP PEAK  3(5Q22.3) MUTATED AMP PEAK  3(5Q22.3) WILD-TYPE
  R0                          15                           106
  R1                           0                             2
  R2                           2                            10
  RX                           0                             3
D3V11, continuous

Clustering(4) Variable = AMP PEAK  4(6P21.1) MUTATION ANALYSIS
D4V1, survival
                               sevent
clus2                            0  1
  AMP PEAK  4(6P21.1) MUTATED   35  4
  AMP PEAK  4(6P21.1) WILD-TYPE 82  9
  AMP PEAK  4(6P21.1) MUTATED AMP PEAK  4(6P21.1) WILD-TYPE 
                           39                            91 
  AMP PEAK  4(6P21.1) MUTATED AMP PEAK  4(6P21.1) WILD-TYPE 
                            4                             9 
$`AMP PEAK  4(6P21.1) MUTATED`
TCGA-AF-2687 TCGA-AF-2691 TCGA-AF-2693 TCGA-AF-3911 TCGA-AF-3913 TCGA-AF-4110 
       24.13        10.62        19.10        25.02        10.39        14.50 
TCGA-AF-6136 TCGA-AG-3582 TCGA-AG-3587 TCGA-AG-3883 TCGA-AG-3896 TCGA-AG-4007 
       15.35         1.02         1.02         1.02         1.02         1.02 
TCGA-AG-4022 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01N TCGA-AH-6644 
        0.99        13.02         1.02        12.00        12.00         0.72 
TCGA-BM-6198 TCGA-CI-6619 TCGA-CI-6623 TCGA-DC-4745 TCGA-DC-5869 TCGA-DC-6154 
       10.19         6.02         9.37        10.98        12.99        12.00 
TCGA-DC-6156 TCGA-DC-6157 TCGA-DC-6682 TCGA-DY-A1DE TCGA-DY-A1DF TCGA-DY-A1DG 
       15.02        36.00        13.02       129.27        24.13        51.48 
TCGA-EI-6506 TCGA-EI-6511 TCGA-EI-6512 TCGA-F5-6465 TCGA-F5-6702 TCGA-F5-6810 
       20.55        15.85        17.69         3.39         2.17         0.39 
TCGA-F5-6812 TCGA-G5-6233 TCGA-G5-6641 
        0.66        18.25        26.43 

$`AMP PEAK  4(6P21.1) WILD-TYPE`
TCGA-AF-2689 TCGA-AF-2690 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-5654 TCGA-AF-6655 
       17.95        17.23        13.55        12.72         8.45        11.67 
TCGA-AF-6672 TCGA-AG-3575 TCGA-AG-3581 TCGA-AG-3583 TCGA-AG-3586 TCGA-AG-3599 
       10.39        12.00         1.02         2.01         1.02         0.99 
TCGA-AG-3605 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3731 TCGA-AG-3742 TCGA-AG-3878 
        0.99         7.96         0.95         1.02         0.99         0.99 
TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 
        0.92         1.02         0.99         0.99         1.02         1.02 
TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y 
        1.02        20.94        13.91         6.02        25.94        23.01 
TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A01J TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 
       17.03        15.91         1.02        70.03        63.98        10.98 
TCGA-AG-A023 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X 
       51.98        49.94         1.94        38.93        61.94        40.96 
TCGA-AG-A032 TCGA-AH-6544 TCGA-AH-6547 TCGA-AH-6643 TCGA-AH-6897 TCGA-AH-6903 
       38.01         0.49         1.45         0.69         4.60         1.81 
TCGA-CI-6620 TCGA-CI-6622 TCGA-CI-6624 TCGA-CL-4957 TCGA-CL-5917 TCGA-CL-5918 
        6.02         6.94         4.70        13.97        60.00         7.99 
TCGA-DC-4749 TCGA-DC-5337 TCGA-DC-6155 TCGA-DC-6158 TCGA-DC-6160 TCGA-DC-6681 
       11.01        15.02        14.01         6.97        30.05        12.95 
TCGA-DC-6683 TCGA-DT-5265 TCGA-DY-A0XA TCGA-DY-A1DC TCGA-DY-A1DD TCGA-DY-A1H8 
       10.06         5.29       126.41        41.33        57.24        32.58 
TCGA-EF-5830 TCGA-EF-5831 TCGA-EI-6507 TCGA-EI-6508 TCGA-EI-6509 TCGA-EI-6510 
        0.49         2.40        19.96        20.91        17.00        18.28 
TCGA-EI-6513 TCGA-EI-6514 TCGA-EI-6881 TCGA-EI-6882 TCGA-EI-6883 TCGA-EI-6884 
       16.34        16.31        16.37         8.61        11.51        10.78 
TCGA-EI-6885 TCGA-EI-6917 TCGA-EI-7002 TCGA-EI-7004 TCGA-F5-6571 TCGA-F5-6811 
       13.61        17.46        11.97         8.45         0.85         1.02 
TCGA-F5-6813 TCGA-F5-6814 TCGA-F5-6861 TCGA-F5-6863 TCGA-F5-6864 TCGA-G5-6235 
        0.69         0.53         1.08         0.76         0.46        55.76 
TCGA-G5-6572 
       47.08 

  AMP PEAK  4(6P21.1) MUTATED AMP PEAK  4(6P21.1) WILD-TYPE 
                         0.39                          0.46 
  AMP PEAK  4(6P21.1) MUTATED AMP PEAK  4(6P21.1) WILD-TYPE 
                       129.27                        126.41 
  AMP PEAK  4(6P21.1) MUTATED AMP PEAK  4(6P21.1) WILD-TYPE 
                        12.00                         10.78 
[1] "0.4 - 129.3 (12.0)" "0.5 - 126.4 (10.8)"
                   TCGA-AF-2687                    TCGA-AF-2689 
  "AMP PEAK  4(6P21.1) MUTATED" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
"AMP PEAK  4(6P21.1) WILD-TYPE"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-AF-2692                    TCGA-AF-2693 
"AMP PEAK  4(6P21.1) WILD-TYPE"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-AF-3400                    TCGA-AF-3911 
"AMP PEAK  4(6P21.1) WILD-TYPE"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-AF-3913                    TCGA-AF-4110 
  "AMP PEAK  4(6P21.1) MUTATED"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"AMP PEAK  4(6P21.1) WILD-TYPE"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-3575                    TCGA-AG-3581 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-3582                    TCGA-AG-3583 
  "AMP PEAK  4(6P21.1) MUTATED" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-3586                    TCGA-AG-3587 
"AMP PEAK  4(6P21.1) WILD-TYPE"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-AG-3599                    TCGA-AG-3605 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-3726                    TCGA-AG-3727 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-3731                    TCGA-AG-3742 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-3878                    TCGA-AG-3883 
"AMP PEAK  4(6P21.1) WILD-TYPE"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-3896                    TCGA-AG-3999 
  "AMP PEAK  4(6P21.1) MUTATED" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-4001                    TCGA-AG-4007 
"AMP PEAK  4(6P21.1) WILD-TYPE"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-AG-4008                    TCGA-AG-4022 
"AMP PEAK  4(6P21.1) WILD-TYPE"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-AG-A002                    TCGA-AG-A008 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-A00C                    TCGA-AG-A00H 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-A00Y                    TCGA-AG-A011 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-A014                    TCGA-AG-A015 
"AMP PEAK  4(6P21.1) WILD-TYPE"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-AG-A016                    TCGA-AG-A01J 
  "AMP PEAK  4(6P21.1) MUTATED" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-A01L                    TCGA-AG-A01N 
  "AMP PEAK  4(6P21.1) MUTATED"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-AG-A01W                    TCGA-AG-A01Y 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-A020                    TCGA-AG-A023 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-A025                    TCGA-AG-A026 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-A02G                    TCGA-AG-A02N 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-A02X                    TCGA-AG-A032 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AH-6544                    TCGA-AH-6547 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AH-6643                    TCGA-AH-6644 
"AMP PEAK  4(6P21.1) WILD-TYPE"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-AH-6897                    TCGA-AH-6903 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-BM-6198                    TCGA-CI-6619 
  "AMP PEAK  4(6P21.1) MUTATED"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-CI-6620                    TCGA-CI-6622 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-CI-6623                    TCGA-CI-6624 
  "AMP PEAK  4(6P21.1) MUTATED" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-CL-4957                    TCGA-CL-5917 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-CL-5918                    TCGA-DC-4745 
"AMP PEAK  4(6P21.1) WILD-TYPE"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-DC-4749                    TCGA-DC-5337 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-DC-5869                    TCGA-DC-6154 
  "AMP PEAK  4(6P21.1) MUTATED"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-DC-6155                    TCGA-DC-6156 
"AMP PEAK  4(6P21.1) WILD-TYPE"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-DC-6157                    TCGA-DC-6158 
  "AMP PEAK  4(6P21.1) MUTATED" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-DC-6160                    TCGA-DC-6681 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-DC-6682                    TCGA-DC-6683 
  "AMP PEAK  4(6P21.1) MUTATED" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-DT-5265                    TCGA-DY-A0XA 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-DY-A1DC                    TCGA-DY-A1DD 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-DY-A1DE                    TCGA-DY-A1DF 
  "AMP PEAK  4(6P21.1) MUTATED"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-DY-A1DG                    TCGA-DY-A1H8 
  "AMP PEAK  4(6P21.1) MUTATED" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-EF-5830                    TCGA-EF-5831 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-EI-6506                    TCGA-EI-6507 
  "AMP PEAK  4(6P21.1) MUTATED" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-EI-6508                    TCGA-EI-6509 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-EI-6510                    TCGA-EI-6511 
"AMP PEAK  4(6P21.1) WILD-TYPE"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-EI-6512                    TCGA-EI-6513 
  "AMP PEAK  4(6P21.1) MUTATED" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-EI-6514                    TCGA-EI-6881 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-EI-6882                    TCGA-EI-6883 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-EI-6884                    TCGA-EI-6885 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-EI-6917                    TCGA-EI-7002 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-EI-7004                    TCGA-F5-6465 
"AMP PEAK  4(6P21.1) WILD-TYPE"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-F5-6571                    TCGA-F5-6702 
"AMP PEAK  4(6P21.1) WILD-TYPE"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-F5-6810                    TCGA-F5-6811 
  "AMP PEAK  4(6P21.1) MUTATED" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-F5-6812                    TCGA-F5-6813 
  "AMP PEAK  4(6P21.1) MUTATED" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-F5-6814                    TCGA-F5-6861 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-F5-6863                    TCGA-F5-6864 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-G5-6233                    TCGA-G5-6235 
  "AMP PEAK  4(6P21.1) MUTATED" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-G5-6572                    TCGA-G5-6641 
"AMP PEAK  4(6P21.1) WILD-TYPE"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-AF-2687                    TCGA-AF-2689 
  "AMP PEAK  4(6P21.1) MUTATED" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
"AMP PEAK  4(6P21.1) WILD-TYPE"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-AF-2692                    TCGA-AF-2693 
"AMP PEAK  4(6P21.1) WILD-TYPE"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-AF-3400                    TCGA-AF-3911 
"AMP PEAK  4(6P21.1) WILD-TYPE"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-AF-3913                    TCGA-AF-4110 
  "AMP PEAK  4(6P21.1) MUTATED"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"AMP PEAK  4(6P21.1) WILD-TYPE"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-3575                    TCGA-AG-3581 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-3582                    TCGA-AG-3583 
  "AMP PEAK  4(6P21.1) MUTATED" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-3586                    TCGA-AG-3587 
"AMP PEAK  4(6P21.1) WILD-TYPE"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-AG-3599                    TCGA-AG-3605 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-3726                    TCGA-AG-3727 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-3731                    TCGA-AG-3742 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-3878                    TCGA-AG-3883 
"AMP PEAK  4(6P21.1) WILD-TYPE"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-3896                    TCGA-AG-3999 
  "AMP PEAK  4(6P21.1) MUTATED" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-4001                    TCGA-AG-4007 
"AMP PEAK  4(6P21.1) WILD-TYPE"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-AG-4008                    TCGA-AG-4022 
"AMP PEAK  4(6P21.1) WILD-TYPE"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-AG-A002                    TCGA-AG-A008 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-A00C                    TCGA-AG-A00H 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-A00Y                    TCGA-AG-A011 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-A014                    TCGA-AG-A015 
"AMP PEAK  4(6P21.1) WILD-TYPE"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-AG-A016                    TCGA-AG-A01J 
  "AMP PEAK  4(6P21.1) MUTATED" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-A01L                    TCGA-AG-A01N 
  "AMP PEAK  4(6P21.1) MUTATED"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-AG-A01W                    TCGA-AG-A01Y 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-A020                    TCGA-AG-A023 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-A025                    TCGA-AG-A026 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-A02G                    TCGA-AG-A02N 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-A02X                    TCGA-AG-A032 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AH-6544                    TCGA-AH-6547 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AH-6643                    TCGA-AH-6644 
"AMP PEAK  4(6P21.1) WILD-TYPE"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-AH-6897                    TCGA-AH-6903 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-BM-6198                    TCGA-CI-6619 
  "AMP PEAK  4(6P21.1) MUTATED"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-CI-6620                    TCGA-CI-6622 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-CI-6623                    TCGA-CI-6624 
  "AMP PEAK  4(6P21.1) MUTATED" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-CL-4957                    TCGA-CL-5917 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-CL-5918                    TCGA-DC-4745 
"AMP PEAK  4(6P21.1) WILD-TYPE"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-DC-4749                    TCGA-DC-5337 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-DC-5869                    TCGA-DC-6154 
  "AMP PEAK  4(6P21.1) MUTATED"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-DC-6155                    TCGA-DC-6156 
"AMP PEAK  4(6P21.1) WILD-TYPE"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-DC-6157                    TCGA-DC-6158 
  "AMP PEAK  4(6P21.1) MUTATED" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-DC-6160                    TCGA-DC-6681 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-DC-6682                    TCGA-DC-6683 
  "AMP PEAK  4(6P21.1) MUTATED" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-DT-5265                    TCGA-DY-A0XA 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-DY-A1DC                    TCGA-DY-A1DD 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-DY-A1DE                    TCGA-DY-A1DF 
  "AMP PEAK  4(6P21.1) MUTATED"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-DY-A1DG                    TCGA-DY-A1H8 
  "AMP PEAK  4(6P21.1) MUTATED" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-EF-5830                    TCGA-EF-5831 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-EI-6506                    TCGA-EI-6507 
  "AMP PEAK  4(6P21.1) MUTATED" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-EI-6508                    TCGA-EI-6509 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-EI-6510                    TCGA-EI-6511 
"AMP PEAK  4(6P21.1) WILD-TYPE"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-EI-6512                    TCGA-EI-6513 
  "AMP PEAK  4(6P21.1) MUTATED" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-EI-6514                    TCGA-EI-6881 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-EI-6882                    TCGA-EI-6883 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-EI-6884                    TCGA-EI-6885 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-EI-6917                    TCGA-EI-7002 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-EI-7004                    TCGA-F5-6465 
"AMP PEAK  4(6P21.1) WILD-TYPE"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-F5-6571                    TCGA-F5-6702 
"AMP PEAK  4(6P21.1) WILD-TYPE"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-F5-6810                    TCGA-F5-6811 
  "AMP PEAK  4(6P21.1) MUTATED" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-F5-6812                    TCGA-F5-6813 
  "AMP PEAK  4(6P21.1) MUTATED" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-F5-6814                    TCGA-F5-6861 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-F5-6863                    TCGA-F5-6864 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-G5-6233                    TCGA-G5-6235 
  "AMP PEAK  4(6P21.1) MUTATED" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-G5-6572                    TCGA-G5-6641 
"AMP PEAK  4(6P21.1) WILD-TYPE"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-AF-2687                    TCGA-AF-2689 
  "AMP PEAK  4(6P21.1) MUTATED" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
"AMP PEAK  4(6P21.1) WILD-TYPE"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-AF-2692                    TCGA-AF-2693 
"AMP PEAK  4(6P21.1) WILD-TYPE"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-AF-3400                    TCGA-AF-3911 
"AMP PEAK  4(6P21.1) WILD-TYPE"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-AF-3913                    TCGA-AF-4110 
  "AMP PEAK  4(6P21.1) MUTATED"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"AMP PEAK  4(6P21.1) WILD-TYPE"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-3575                    TCGA-AG-3581 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-3582                    TCGA-AG-3583 
  "AMP PEAK  4(6P21.1) MUTATED" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-3586                    TCGA-AG-3587 
"AMP PEAK  4(6P21.1) WILD-TYPE"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-AG-3599                    TCGA-AG-3605 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-3726                    TCGA-AG-3727 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-3731                    TCGA-AG-3742 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-3878                    TCGA-AG-3883 
"AMP PEAK  4(6P21.1) WILD-TYPE"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-3896                    TCGA-AG-3999 
  "AMP PEAK  4(6P21.1) MUTATED" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-4001                    TCGA-AG-4007 
"AMP PEAK  4(6P21.1) WILD-TYPE"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-AG-4008                    TCGA-AG-4022 
"AMP PEAK  4(6P21.1) WILD-TYPE"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-AG-A002                    TCGA-AG-A008 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-A00C                    TCGA-AG-A00H 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-A00Y                    TCGA-AG-A011 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-A014                    TCGA-AG-A015 
"AMP PEAK  4(6P21.1) WILD-TYPE"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-AG-A016                    TCGA-AG-A01J 
  "AMP PEAK  4(6P21.1) MUTATED" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-A01L                    TCGA-AG-A01N 
  "AMP PEAK  4(6P21.1) MUTATED"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-AG-A01W                    TCGA-AG-A01Y 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-A020                    TCGA-AG-A023 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-A025                    TCGA-AG-A026 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-A02G                    TCGA-AG-A02N 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-A02X                    TCGA-AG-A032 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AH-6544                    TCGA-AH-6547 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AH-6643                    TCGA-AH-6644 
"AMP PEAK  4(6P21.1) WILD-TYPE"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-AH-6897                    TCGA-AH-6903 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-BM-6198                    TCGA-CI-6619 
  "AMP PEAK  4(6P21.1) MUTATED"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-CI-6620                    TCGA-CI-6622 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-CI-6623                    TCGA-CI-6624 
  "AMP PEAK  4(6P21.1) MUTATED" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-CL-4957                    TCGA-CL-5917 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-CL-5918                    TCGA-DC-4745 
"AMP PEAK  4(6P21.1) WILD-TYPE"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-DC-4749                    TCGA-DC-5337 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-DC-5869                    TCGA-DC-6154 
  "AMP PEAK  4(6P21.1) MUTATED"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-DC-6155                    TCGA-DC-6156 
"AMP PEAK  4(6P21.1) WILD-TYPE"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-DC-6157                    TCGA-DC-6158 
  "AMP PEAK  4(6P21.1) MUTATED" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-DC-6160                    TCGA-DC-6681 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-DC-6682                    TCGA-DC-6683 
  "AMP PEAK  4(6P21.1) MUTATED" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-DT-5265                    TCGA-DY-A0XA 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-DY-A1DC                    TCGA-DY-A1DD 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-DY-A1DE                    TCGA-DY-A1DF 
  "AMP PEAK  4(6P21.1) MUTATED"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-DY-A1DG                    TCGA-DY-A1H8 
  "AMP PEAK  4(6P21.1) MUTATED" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-EF-5830                    TCGA-EF-5831 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-EI-6506                    TCGA-EI-6507 
  "AMP PEAK  4(6P21.1) MUTATED" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-EI-6508                    TCGA-EI-6509 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-EI-6510                    TCGA-EI-6511 
"AMP PEAK  4(6P21.1) WILD-TYPE"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-EI-6512                    TCGA-EI-6513 
  "AMP PEAK  4(6P21.1) MUTATED" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-EI-6514                    TCGA-EI-6881 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-EI-6882                    TCGA-EI-6883 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-EI-6884                    TCGA-EI-6885 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-EI-6917                    TCGA-EI-7002 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-EI-7004                    TCGA-F5-6465 
"AMP PEAK  4(6P21.1) WILD-TYPE"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-F5-6571                    TCGA-F5-6702 
"AMP PEAK  4(6P21.1) WILD-TYPE"   "AMP PEAK  4(6P21.1) MUTATED" 
                   TCGA-F5-6810                    TCGA-F5-6811 
  "AMP PEAK  4(6P21.1) MUTATED" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-F5-6812                    TCGA-F5-6813 
  "AMP PEAK  4(6P21.1) MUTATED" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-F5-6814                    TCGA-F5-6861 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-F5-6863                    TCGA-F5-6864 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-G5-6233                    TCGA-G5-6235 
  "AMP PEAK  4(6P21.1) MUTATED" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-G5-6572                    TCGA-G5-6641 
"AMP PEAK  4(6P21.1) WILD-TYPE"   "AMP PEAK  4(6P21.1) MUTATED" 
[1] "hr=" "1.5"
D4V2, continuous
                               vv
clus                            STAGE I STAGE II STAGE IIA STAGE IIB STAGE IIC
  AMP PEAK  4(6P21.1) MUTATED         8        1         9         0         1
  AMP PEAK  4(6P21.1) WILD-TYPE      22        7        29         2         1
                               vv
clus                            STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  AMP PEAK  4(6P21.1) MUTATED           2          1         10          6
  AMP PEAK  4(6P21.1) WILD-TYPE         3          8         13          8
                               vv
clus                            STAGE IV STAGE IVA
  AMP PEAK  4(6P21.1) MUTATED          8         5
  AMP PEAK  4(6P21.1) WILD-TYPE        9         4
D4V3, multiclass
                               vv
clus                            T1 T2 T3 T4
  AMP PEAK  4(6P21.1) MUTATED    4  6 38  5
  AMP PEAK  4(6P21.1) WILD-TYPE  5 23 71  9
D4V4, multiclass
    clus
vv   AMP PEAK  4(6P21.1) MUTATED AMP PEAK  4(6P21.1) WILD-TYPE
  T1                           4                             5
  T2                           6                            23
  T3                          38                            71
  T4                           5                             9
                               vv
clus                            N0 N1 N2
  AMP PEAK  4(6P21.1) MUTATED   19 17 16
  AMP PEAK  4(6P21.1) WILD-TYPE 64 28 16
D4V5, multiclass
    clus
vv   AMP PEAK  4(6P21.1) MUTATED AMP PEAK  4(6P21.1) WILD-TYPE
  N0                          19                            64
  N1                          17                            28
  N2                          16                            16
                               vv
clus                            M0 M1 M1A MX
  AMP PEAK  4(6P21.1) MUTATED   32 12   1  7
  AMP PEAK  4(6P21.1) WILD-TYPE 91 10   1  6
D4V6, multiclass
     clus
vv    AMP PEAK  4(6P21.1) MUTATED AMP PEAK  4(6P21.1) WILD-TYPE
  M0                           32                            91
  M1                           12                            10
  M1A                           1                             1
  MX                            7                             6
D4V7, binary
                               cls
clus                             0  1
  AMP PEAK  4(6P21.1) MUTATED   21 32
  AMP PEAK  4(6P21.1) WILD-TYPE 53 56
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  4(6P21.1) MUTATED     21   32
  AMP PEAK  4(6P21.1) WILD-TYPE   53   56
        clus
vv       AMP PEAK  4(6P21.1) MUTATED AMP PEAK  4(6P21.1) WILD-TYPE
  FEMALE                          21                            53
  MALE                            32                            56
D4V8, binary
                               cls
clus                             0  1
  AMP PEAK  4(6P21.1) MUTATED   50  1
  AMP PEAK  4(6P21.1) WILD-TYPE 93 12
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  4(6P21.1) MUTATED     50    1
  AMP PEAK  4(6P21.1) WILD-TYPE   93   12
                                clus
vv                               AMP PEAK  4(6P21.1) MUTATED
  RECTAL ADENOCARCINOMA                                   50
  RECTAL MUCINOUS ADENOCARCINOMA                           1
                                clus
vv                               AMP PEAK  4(6P21.1) WILD-TYPE
  RECTAL ADENOCARCINOMA                                     93
  RECTAL MUCINOUS ADENOCARCINOMA                            12
D4V9, binary
                               cls
clus                              0   1
  AMP PEAK  4(6P21.1) MUTATED     4  49
  AMP PEAK  4(6P21.1) WILD-TYPE   2 107
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  4(6P21.1) MUTATED      4   49
  AMP PEAK  4(6P21.1) WILD-TYPE    2  107
     clus
vv    AMP PEAK  4(6P21.1) MUTATED AMP PEAK  4(6P21.1) WILD-TYPE
  NO                            4                             2
  YES                          49                           107
                               vv
clus                            R0 R1 R2 RX
  AMP PEAK  4(6P21.1) MUTATED   36  0  7  0
  AMP PEAK  4(6P21.1) WILD-TYPE 85  2  5  3
D4V10, multiclass
    clus
vv   AMP PEAK  4(6P21.1) MUTATED AMP PEAK  4(6P21.1) WILD-TYPE
  R0                          36                            85
  R1                           0                             2
  R2                           7                             5
  RX                           0                             3
D4V11, continuous

Clustering(5) Variable = AMP PEAK  5(8P11.23) MUTATION ANALYSIS
D5V1, survival
                                sevent
clus2                             0  1
  AMP PEAK  5(8P11.23) MUTATED   36  8
  AMP PEAK  5(8P11.23) WILD-TYPE 81  5
  AMP PEAK  5(8P11.23) MUTATED AMP PEAK  5(8P11.23) WILD-TYPE 
                            44                             86 
  AMP PEAK  5(8P11.23) MUTATED AMP PEAK  5(8P11.23) WILD-TYPE 
                             8                              5 
$`AMP PEAK  5(8P11.23) MUTATED`
TCGA-AF-3911 TCGA-AF-6655 TCGA-AF-6672 TCGA-AG-3582 TCGA-AG-3605 TCGA-AG-3887 
       25.02        11.67        10.39         1.02         0.99         0.92 
TCGA-AG-3893 TCGA-AG-3896 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4022 TCGA-AG-A014 
        0.99         1.02         1.02         1.02         0.99        15.91 
TCGA-AG-A01N TCGA-AG-A023 TCGA-AG-A032 TCGA-AH-6544 TCGA-AH-6643 TCGA-AH-6644 
       12.00        51.98        38.01         0.49         0.69         0.72 
TCGA-CI-6619 TCGA-CI-6623 TCGA-CI-6624 TCGA-CL-5917 TCGA-CL-5918 TCGA-DC-6156 
        6.02         9.37         4.70        60.00         7.99        15.02 
TCGA-DC-6157 TCGA-DC-6158 TCGA-DC-6682 TCGA-DY-A1DC TCGA-DY-A1DD TCGA-DY-A1DF 
       36.00         6.97        13.02        41.33        57.24        24.13 
TCGA-DY-A1DG TCGA-EF-5830 TCGA-EI-6509 TCGA-EI-6511 TCGA-EI-6514 TCGA-EI-6883 
       51.48         0.49        17.00        15.85        16.31        11.51 
TCGA-EI-6884 TCGA-F5-6465 TCGA-F5-6702 TCGA-F5-6811 TCGA-F5-6813 TCGA-F5-6864 
       10.78         3.39         2.17         1.02         0.69         0.46 
TCGA-G5-6233 TCGA-G5-6572 
       18.25        47.08 

$`AMP PEAK  5(8P11.23) WILD-TYPE`
TCGA-AF-2687 TCGA-AF-2689 TCGA-AF-2690 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-2693 
       24.13        17.95        17.23        10.62        13.55        19.10 
TCGA-AF-3400 TCGA-AF-3913 TCGA-AF-4110 TCGA-AF-5654 TCGA-AF-6136 TCGA-AG-3575 
       12.72        10.39        14.50         8.45        15.35        12.00 
TCGA-AG-3581 TCGA-AG-3583 TCGA-AG-3586 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 
        1.02         2.01         1.02         1.02         0.99         7.96 
TCGA-AG-3727 TCGA-AG-3731 TCGA-AG-3742 TCGA-AG-3878 TCGA-AG-3883 TCGA-AG-3892 
        0.95         1.02         0.99         0.99         1.02         1.02 
TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C 
        0.99         1.02         1.02        20.94        13.91         6.02 
TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01J 
       25.94        23.01        17.03        13.02         1.02         1.02 
TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 
       12.00        70.03        63.98        10.98        49.94         1.94 
TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AH-6547 TCGA-AH-6897 TCGA-AH-6903 
       38.93        61.94        40.96         1.45         4.60         1.81 
TCGA-BM-6198 TCGA-CI-6620 TCGA-CI-6622 TCGA-CL-4957 TCGA-DC-4745 TCGA-DC-4749 
       10.19         6.02         6.94        13.97        10.98        11.01 
TCGA-DC-5337 TCGA-DC-5869 TCGA-DC-6154 TCGA-DC-6155 TCGA-DC-6160 TCGA-DC-6681 
       15.02        12.99        12.00        14.01        30.05        12.95 
TCGA-DC-6683 TCGA-DT-5265 TCGA-DY-A0XA TCGA-DY-A1DE TCGA-DY-A1H8 TCGA-EF-5831 
       10.06         5.29       126.41       129.27        32.58         2.40 
TCGA-EI-6506 TCGA-EI-6507 TCGA-EI-6508 TCGA-EI-6510 TCGA-EI-6512 TCGA-EI-6513 
       20.55        19.96        20.91        18.28        17.69        16.34 
TCGA-EI-6881 TCGA-EI-6882 TCGA-EI-6885 TCGA-EI-6917 TCGA-EI-7002 TCGA-EI-7004 
       16.37         8.61        13.61        17.46        11.97         8.45 
TCGA-F5-6571 TCGA-F5-6810 TCGA-F5-6812 TCGA-F5-6814 TCGA-F5-6861 TCGA-F5-6863 
        0.85         0.39         0.66         0.53         1.08         0.76 
TCGA-G5-6235 TCGA-G5-6641 
       55.76        26.43 

  AMP PEAK  5(8P11.23) MUTATED AMP PEAK  5(8P11.23) WILD-TYPE 
                          0.46                           0.39 
  AMP PEAK  5(8P11.23) MUTATED AMP PEAK  5(8P11.23) WILD-TYPE 
                         60.00                         129.27 
  AMP PEAK  5(8P11.23) MUTATED AMP PEAK  5(8P11.23) WILD-TYPE 
                         9.880                         11.985 
[1] "0.5 - 60.0 (9.9)"   "0.4 - 129.3 (12.0)"
                    TCGA-AF-2687                     TCGA-AF-2689 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"AMP PEAK  5(8P11.23) WILD-TYPE"   "AMP PEAK  5(8P11.23) MUTATED" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
  "AMP PEAK  5(8P11.23) MUTATED"   "AMP PEAK  5(8P11.23) MUTATED" 
                    TCGA-AG-3575                     TCGA-AG-3581 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-3582                     TCGA-AG-3583 
  "AMP PEAK  5(8P11.23) MUTATED" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"AMP PEAK  5(8P11.23) WILD-TYPE"   "AMP PEAK  5(8P11.23) MUTATED" 
                    TCGA-AG-3726                     TCGA-AG-3727 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
  "AMP PEAK  5(8P11.23) MUTATED" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
  "AMP PEAK  5(8P11.23) MUTATED" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
  "AMP PEAK  5(8P11.23) MUTATED" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-4001                     TCGA-AG-4007 
  "AMP PEAK  5(8P11.23) MUTATED"   "AMP PEAK  5(8P11.23) MUTATED" 
                    TCGA-AG-4008                     TCGA-AG-4022 
"AMP PEAK  5(8P11.23) WILD-TYPE"   "AMP PEAK  5(8P11.23) MUTATED" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
  "AMP PEAK  5(8P11.23) MUTATED" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
"AMP PEAK  5(8P11.23) WILD-TYPE"   "AMP PEAK  5(8P11.23) MUTATED" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"AMP PEAK  5(8P11.23) WILD-TYPE"   "AMP PEAK  5(8P11.23) MUTATED" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
"AMP PEAK  5(8P11.23) WILD-TYPE"   "AMP PEAK  5(8P11.23) MUTATED" 
                    TCGA-AH-6544                     TCGA-AH-6547 
  "AMP PEAK  5(8P11.23) MUTATED" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
  "AMP PEAK  5(8P11.23) MUTATED"   "AMP PEAK  5(8P11.23) MUTATED" 
                    TCGA-AH-6897                     TCGA-AH-6903 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
"AMP PEAK  5(8P11.23) WILD-TYPE"   "AMP PEAK  5(8P11.23) MUTATED" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
  "AMP PEAK  5(8P11.23) MUTATED"   "AMP PEAK  5(8P11.23) MUTATED" 
                    TCGA-CL-4957                     TCGA-CL-5917 
"AMP PEAK  5(8P11.23) WILD-TYPE"   "AMP PEAK  5(8P11.23) MUTATED" 
                    TCGA-CL-5918                     TCGA-DC-4745 
  "AMP PEAK  5(8P11.23) MUTATED" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-DC-4749                     TCGA-DC-5337 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-DC-6155                     TCGA-DC-6156 
"AMP PEAK  5(8P11.23) WILD-TYPE"   "AMP PEAK  5(8P11.23) MUTATED" 
                    TCGA-DC-6157                     TCGA-DC-6158 
  "AMP PEAK  5(8P11.23) MUTATED"   "AMP PEAK  5(8P11.23) MUTATED" 
                    TCGA-DC-6160                     TCGA-DC-6681 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
  "AMP PEAK  5(8P11.23) MUTATED" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
  "AMP PEAK  5(8P11.23) MUTATED"   "AMP PEAK  5(8P11.23) MUTATED" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
"AMP PEAK  5(8P11.23) WILD-TYPE"   "AMP PEAK  5(8P11.23) MUTATED" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
  "AMP PEAK  5(8P11.23) MUTATED" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-EF-5830                     TCGA-EF-5831 
  "AMP PEAK  5(8P11.23) MUTATED" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-EI-6506                     TCGA-EI-6507 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"AMP PEAK  5(8P11.23) WILD-TYPE"   "AMP PEAK  5(8P11.23) MUTATED" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"AMP PEAK  5(8P11.23) WILD-TYPE"   "AMP PEAK  5(8P11.23) MUTATED" 
                    TCGA-EI-6512                     TCGA-EI-6513 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-EI-6514                     TCGA-EI-6881 
  "AMP PEAK  5(8P11.23) MUTATED" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"AMP PEAK  5(8P11.23) WILD-TYPE"   "AMP PEAK  5(8P11.23) MUTATED" 
                    TCGA-EI-6884                     TCGA-EI-6885 
  "AMP PEAK  5(8P11.23) MUTATED" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-EI-7004                     TCGA-F5-6465 
"AMP PEAK  5(8P11.23) WILD-TYPE"   "AMP PEAK  5(8P11.23) MUTATED" 
                    TCGA-F5-6571                     TCGA-F5-6702 
"AMP PEAK  5(8P11.23) WILD-TYPE"   "AMP PEAK  5(8P11.23) MUTATED" 
                    TCGA-F5-6810                     TCGA-F5-6811 
"AMP PEAK  5(8P11.23) WILD-TYPE"   "AMP PEAK  5(8P11.23) MUTATED" 
                    TCGA-F5-6812                     TCGA-F5-6813 
"AMP PEAK  5(8P11.23) WILD-TYPE"   "AMP PEAK  5(8P11.23) MUTATED" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
"AMP PEAK  5(8P11.23) WILD-TYPE"   "AMP PEAK  5(8P11.23) MUTATED" 
                    TCGA-G5-6233                     TCGA-G5-6235 
  "AMP PEAK  5(8P11.23) MUTATED" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-G5-6572                     TCGA-G5-6641 
  "AMP PEAK  5(8P11.23) MUTATED" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"AMP PEAK  5(8P11.23) WILD-TYPE"   "AMP PEAK  5(8P11.23) MUTATED" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
  "AMP PEAK  5(8P11.23) MUTATED"   "AMP PEAK  5(8P11.23) MUTATED" 
                    TCGA-AG-3575                     TCGA-AG-3581 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-3582                     TCGA-AG-3583 
  "AMP PEAK  5(8P11.23) MUTATED" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"AMP PEAK  5(8P11.23) WILD-TYPE"   "AMP PEAK  5(8P11.23) MUTATED" 
                    TCGA-AG-3726                     TCGA-AG-3727 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
  "AMP PEAK  5(8P11.23) MUTATED" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
  "AMP PEAK  5(8P11.23) MUTATED" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
  "AMP PEAK  5(8P11.23) MUTATED" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-4001                     TCGA-AG-4007 
  "AMP PEAK  5(8P11.23) MUTATED"   "AMP PEAK  5(8P11.23) MUTATED" 
                    TCGA-AG-4008                     TCGA-AG-4022 
"AMP PEAK  5(8P11.23) WILD-TYPE"   "AMP PEAK  5(8P11.23) MUTATED" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
  "AMP PEAK  5(8P11.23) MUTATED" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
"AMP PEAK  5(8P11.23) WILD-TYPE"   "AMP PEAK  5(8P11.23) MUTATED" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"AMP PEAK  5(8P11.23) WILD-TYPE"   "AMP PEAK  5(8P11.23) MUTATED" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
"AMP PEAK  5(8P11.23) WILD-TYPE"   "AMP PEAK  5(8P11.23) MUTATED" 
                    TCGA-AH-6544                     TCGA-AH-6547 
  "AMP PEAK  5(8P11.23) MUTATED" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
  "AMP PEAK  5(8P11.23) MUTATED"   "AMP PEAK  5(8P11.23) MUTATED" 
                    TCGA-AH-6897                     TCGA-AH-6903 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
"AMP PEAK  5(8P11.23) WILD-TYPE"   "AMP PEAK  5(8P11.23) MUTATED" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
  "AMP PEAK  5(8P11.23) MUTATED"   "AMP PEAK  5(8P11.23) MUTATED" 
                    TCGA-CL-4957                     TCGA-CL-5917 
"AMP PEAK  5(8P11.23) WILD-TYPE"   "AMP PEAK  5(8P11.23) MUTATED" 
                    TCGA-CL-5918                     TCGA-DC-4745 
  "AMP PEAK  5(8P11.23) MUTATED" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-DC-4749                     TCGA-DC-5337 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-DC-6155                     TCGA-DC-6156 
"AMP PEAK  5(8P11.23) WILD-TYPE"   "AMP PEAK  5(8P11.23) MUTATED" 
                    TCGA-DC-6157                     TCGA-DC-6158 
  "AMP PEAK  5(8P11.23) MUTATED"   "AMP PEAK  5(8P11.23) MUTATED" 
                    TCGA-DC-6160                     TCGA-DC-6681 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
  "AMP PEAK  5(8P11.23) MUTATED" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
  "AMP PEAK  5(8P11.23) MUTATED"   "AMP PEAK  5(8P11.23) MUTATED" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
"AMP PEAK  5(8P11.23) WILD-TYPE"   "AMP PEAK  5(8P11.23) MUTATED" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
  "AMP PEAK  5(8P11.23) MUTATED" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-EF-5830                     TCGA-EF-5831 
  "AMP PEAK  5(8P11.23) MUTATED" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-EI-6506                     TCGA-EI-6507 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"AMP PEAK  5(8P11.23) WILD-TYPE"   "AMP PEAK  5(8P11.23) MUTATED" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"AMP PEAK  5(8P11.23) WILD-TYPE"   "AMP PEAK  5(8P11.23) MUTATED" 
                    TCGA-EI-6512                     TCGA-EI-6513 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-EI-6514                     TCGA-EI-6881 
  "AMP PEAK  5(8P11.23) MUTATED" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"AMP PEAK  5(8P11.23) WILD-TYPE"   "AMP PEAK  5(8P11.23) MUTATED" 
                    TCGA-EI-6884                     TCGA-EI-6885 
  "AMP PEAK  5(8P11.23) MUTATED" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-EI-7004                     TCGA-F5-6465 
"AMP PEAK  5(8P11.23) WILD-TYPE"   "AMP PEAK  5(8P11.23) MUTATED" 
                    TCGA-F5-6571                     TCGA-F5-6702 
"AMP PEAK  5(8P11.23) WILD-TYPE"   "AMP PEAK  5(8P11.23) MUTATED" 
                    TCGA-F5-6810                     TCGA-F5-6811 
"AMP PEAK  5(8P11.23) WILD-TYPE"   "AMP PEAK  5(8P11.23) MUTATED" 
                    TCGA-F5-6812                     TCGA-F5-6813 
"AMP PEAK  5(8P11.23) WILD-TYPE"   "AMP PEAK  5(8P11.23) MUTATED" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
"AMP PEAK  5(8P11.23) WILD-TYPE"   "AMP PEAK  5(8P11.23) MUTATED" 
                    TCGA-G5-6233                     TCGA-G5-6235 
  "AMP PEAK  5(8P11.23) MUTATED" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-G5-6572                     TCGA-G5-6641 
  "AMP PEAK  5(8P11.23) MUTATED" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"AMP PEAK  5(8P11.23) WILD-TYPE"   "AMP PEAK  5(8P11.23) MUTATED" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
  "AMP PEAK  5(8P11.23) MUTATED"   "AMP PEAK  5(8P11.23) MUTATED" 
                    TCGA-AG-3575                     TCGA-AG-3581 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-3582                     TCGA-AG-3583 
  "AMP PEAK  5(8P11.23) MUTATED" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"AMP PEAK  5(8P11.23) WILD-TYPE"   "AMP PEAK  5(8P11.23) MUTATED" 
                    TCGA-AG-3726                     TCGA-AG-3727 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
  "AMP PEAK  5(8P11.23) MUTATED" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
  "AMP PEAK  5(8P11.23) MUTATED" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
  "AMP PEAK  5(8P11.23) MUTATED" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-4001                     TCGA-AG-4007 
  "AMP PEAK  5(8P11.23) MUTATED"   "AMP PEAK  5(8P11.23) MUTATED" 
                    TCGA-AG-4008                     TCGA-AG-4022 
"AMP PEAK  5(8P11.23) WILD-TYPE"   "AMP PEAK  5(8P11.23) MUTATED" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
  "AMP PEAK  5(8P11.23) MUTATED" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
"AMP PEAK  5(8P11.23) WILD-TYPE"   "AMP PEAK  5(8P11.23) MUTATED" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"AMP PEAK  5(8P11.23) WILD-TYPE"   "AMP PEAK  5(8P11.23) MUTATED" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
"AMP PEAK  5(8P11.23) WILD-TYPE"   "AMP PEAK  5(8P11.23) MUTATED" 
                    TCGA-AH-6544                     TCGA-AH-6547 
  "AMP PEAK  5(8P11.23) MUTATED" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
  "AMP PEAK  5(8P11.23) MUTATED"   "AMP PEAK  5(8P11.23) MUTATED" 
                    TCGA-AH-6897                     TCGA-AH-6903 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
"AMP PEAK  5(8P11.23) WILD-TYPE"   "AMP PEAK  5(8P11.23) MUTATED" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
  "AMP PEAK  5(8P11.23) MUTATED"   "AMP PEAK  5(8P11.23) MUTATED" 
                    TCGA-CL-4957                     TCGA-CL-5917 
"AMP PEAK  5(8P11.23) WILD-TYPE"   "AMP PEAK  5(8P11.23) MUTATED" 
                    TCGA-CL-5918                     TCGA-DC-4745 
  "AMP PEAK  5(8P11.23) MUTATED" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-DC-4749                     TCGA-DC-5337 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-DC-6155                     TCGA-DC-6156 
"AMP PEAK  5(8P11.23) WILD-TYPE"   "AMP PEAK  5(8P11.23) MUTATED" 
                    TCGA-DC-6157                     TCGA-DC-6158 
  "AMP PEAK  5(8P11.23) MUTATED"   "AMP PEAK  5(8P11.23) MUTATED" 
                    TCGA-DC-6160                     TCGA-DC-6681 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
  "AMP PEAK  5(8P11.23) MUTATED" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
  "AMP PEAK  5(8P11.23) MUTATED"   "AMP PEAK  5(8P11.23) MUTATED" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
"AMP PEAK  5(8P11.23) WILD-TYPE"   "AMP PEAK  5(8P11.23) MUTATED" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
  "AMP PEAK  5(8P11.23) MUTATED" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-EF-5830                     TCGA-EF-5831 
  "AMP PEAK  5(8P11.23) MUTATED" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-EI-6506                     TCGA-EI-6507 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"AMP PEAK  5(8P11.23) WILD-TYPE"   "AMP PEAK  5(8P11.23) MUTATED" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"AMP PEAK  5(8P11.23) WILD-TYPE"   "AMP PEAK  5(8P11.23) MUTATED" 
                    TCGA-EI-6512                     TCGA-EI-6513 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-EI-6514                     TCGA-EI-6881 
  "AMP PEAK  5(8P11.23) MUTATED" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"AMP PEAK  5(8P11.23) WILD-TYPE"   "AMP PEAK  5(8P11.23) MUTATED" 
                    TCGA-EI-6884                     TCGA-EI-6885 
  "AMP PEAK  5(8P11.23) MUTATED" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-EI-7004                     TCGA-F5-6465 
"AMP PEAK  5(8P11.23) WILD-TYPE"   "AMP PEAK  5(8P11.23) MUTATED" 
                    TCGA-F5-6571                     TCGA-F5-6702 
"AMP PEAK  5(8P11.23) WILD-TYPE"   "AMP PEAK  5(8P11.23) MUTATED" 
                    TCGA-F5-6810                     TCGA-F5-6811 
"AMP PEAK  5(8P11.23) WILD-TYPE"   "AMP PEAK  5(8P11.23) MUTATED" 
                    TCGA-F5-6812                     TCGA-F5-6813 
"AMP PEAK  5(8P11.23) WILD-TYPE"   "AMP PEAK  5(8P11.23) MUTATED" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
"AMP PEAK  5(8P11.23) WILD-TYPE"   "AMP PEAK  5(8P11.23) MUTATED" 
                    TCGA-G5-6233                     TCGA-G5-6235 
  "AMP PEAK  5(8P11.23) MUTATED" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-G5-6572                     TCGA-G5-6641 
  "AMP PEAK  5(8P11.23) MUTATED" "AMP PEAK  5(8P11.23) WILD-TYPE" 
[1] "hr=" "2.8"
D5V2, continuous
                                vv
clus                             STAGE I STAGE II STAGE IIA STAGE IIB STAGE IIC
  AMP PEAK  5(8P11.23) MUTATED         6        2        13         1         2
  AMP PEAK  5(8P11.23) WILD-TYPE      24        6        25         1         0
                                vv
clus                             STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  AMP PEAK  5(8P11.23) MUTATED           0          2          5          7
  AMP PEAK  5(8P11.23) WILD-TYPE         5          7         18          7
                                vv
clus                             STAGE IV STAGE IVA
  AMP PEAK  5(8P11.23) MUTATED          8         3
  AMP PEAK  5(8P11.23) WILD-TYPE        9         6
D5V3, multiclass
                                vv
clus                             T1 T2 T3 T4
  AMP PEAK  5(8P11.23) MUTATED    1  7 36  7
  AMP PEAK  5(8P11.23) WILD-TYPE  8 22 73  7
D5V4, multiclass
    clus
vv   AMP PEAK  5(8P11.23) MUTATED AMP PEAK  5(8P11.23) WILD-TYPE
  T1                            1                              8
  T2                            7                             22
  T3                           36                             73
  T4                            7                              7
                                vv
clus                             N0 N1 N2
  AMP PEAK  5(8P11.23) MUTATED   24 13 13
  AMP PEAK  5(8P11.23) WILD-TYPE 59 32 19
D5V5, multiclass
    clus
vv   AMP PEAK  5(8P11.23) MUTATED AMP PEAK  5(8P11.23) WILD-TYPE
  N0                           24                             59
  N1                           13                             32
  N2                           13                             19
                                vv
clus                             M0 M1 M1A MX
  AMP PEAK  5(8P11.23) MUTATED   35 10   1  5
  AMP PEAK  5(8P11.23) WILD-TYPE 88 12   1  8
D5V6, multiclass
     clus
vv    AMP PEAK  5(8P11.23) MUTATED AMP PEAK  5(8P11.23) WILD-TYPE
  M0                            35                             88
  M1                            10                             12
  M1A                            1                              1
  MX                             5                              8
D5V7, binary
                                cls
clus                              0  1
  AMP PEAK  5(8P11.23) MUTATED   18 34
  AMP PEAK  5(8P11.23) WILD-TYPE 56 54
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  5(8P11.23) MUTATED     18   34
  AMP PEAK  5(8P11.23) WILD-TYPE   56   54
        clus
vv       AMP PEAK  5(8P11.23) MUTATED AMP PEAK  5(8P11.23) WILD-TYPE
  FEMALE                           18                             56
  MALE                             34                             54
D5V8, binary
                                cls
clus                              0  1
  AMP PEAK  5(8P11.23) MUTATED   50  2
  AMP PEAK  5(8P11.23) WILD-TYPE 93 11
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  5(8P11.23) MUTATED     50    2
  AMP PEAK  5(8P11.23) WILD-TYPE   93   11
                                clus
vv                               AMP PEAK  5(8P11.23) MUTATED
  RECTAL ADENOCARCINOMA                                    50
  RECTAL MUCINOUS ADENOCARCINOMA                            2
                                clus
vv                               AMP PEAK  5(8P11.23) WILD-TYPE
  RECTAL ADENOCARCINOMA                                      93
  RECTAL MUCINOUS ADENOCARCINOMA                             11
D5V9, binary
                                cls
clus                               0   1
  AMP PEAK  5(8P11.23) MUTATED     2  50
  AMP PEAK  5(8P11.23) WILD-TYPE   4 106
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  5(8P11.23) MUTATED      2   50
  AMP PEAK  5(8P11.23) WILD-TYPE    4  106
     clus
vv    AMP PEAK  5(8P11.23) MUTATED AMP PEAK  5(8P11.23) WILD-TYPE
  NO                             2                              4
  YES                           50                            106
                                vv
clus                             R0 R1 R2 RX
  AMP PEAK  5(8P11.23) MUTATED   30  0  7  2
  AMP PEAK  5(8P11.23) WILD-TYPE 91  2  5  1
D5V10, multiclass
    clus
vv   AMP PEAK  5(8P11.23) MUTATED AMP PEAK  5(8P11.23) WILD-TYPE
  R0                           30                             91
  R1                            0                              2
  R2                            7                              5
  RX                            2                              1
D5V11, continuous

Clustering(6) Variable = AMP PEAK  6(8P11.21) MUTATION ANALYSIS
D6V1, survival
                                sevent
clus2                             0  1
  AMP PEAK  6(8P11.21) MUTATED   48  9
  AMP PEAK  6(8P11.21) WILD-TYPE 69  4
  AMP PEAK  6(8P11.21) MUTATED AMP PEAK  6(8P11.21) WILD-TYPE 
                            57                             73 
  AMP PEAK  6(8P11.21) MUTATED AMP PEAK  6(8P11.21) WILD-TYPE 
                             9                              4 
$`AMP PEAK  6(8P11.21) MUTATED`
TCGA-AF-6655 TCGA-AF-6672 TCGA-AG-3582 TCGA-AG-3586 TCGA-AG-3605 TCGA-AG-3883 
       11.67        10.39         1.02         1.02         0.99         1.02 
TCGA-AG-3887 TCGA-AG-3896 TCGA-AG-3999 TCGA-AG-4007 TCGA-AG-4022 TCGA-AG-A00Y 
        0.92         1.02         1.02         1.02         0.99        23.01 
TCGA-AG-A014 TCGA-AG-A016 TCGA-AG-A01J TCGA-AG-A01N TCGA-AG-A01Y TCGA-AG-A023 
       15.91         1.02         1.02        12.00        63.98        51.98 
TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A032 TCGA-AH-6544 TCGA-AH-6547 TCGA-AH-6643 
        1.94        38.93        38.01         0.49         1.45         0.69 
TCGA-AH-6644 TCGA-CI-6619 TCGA-CI-6623 TCGA-CI-6624 TCGA-CL-5917 TCGA-CL-5918 
        0.72         6.02         9.37         4.70        60.00         7.99 
TCGA-DC-6155 TCGA-DC-6156 TCGA-DC-6157 TCGA-DC-6158 TCGA-DC-6682 TCGA-DC-6683 
       14.01        15.02        36.00         6.97        13.02        10.06 
TCGA-DY-A0XA TCGA-DY-A1DC TCGA-DY-A1DD TCGA-DY-A1DE TCGA-DY-A1DF TCGA-EF-5830 
      126.41        41.33        57.24       129.27        24.13         0.49 
TCGA-EI-6509 TCGA-EI-6511 TCGA-EI-6514 TCGA-EI-6883 TCGA-EI-6884 TCGA-EI-6885 
       17.00        15.85        16.31        11.51        10.78        13.61 
TCGA-F5-6465 TCGA-F5-6702 TCGA-F5-6811 TCGA-F5-6863 TCGA-F5-6864 TCGA-G5-6233 
        3.39         2.17         1.02         0.76         0.46        18.25 
TCGA-G5-6235 TCGA-G5-6572 TCGA-G5-6641 
       55.76        47.08        26.43 

$`AMP PEAK  6(8P11.21) WILD-TYPE`
TCGA-AF-2687 TCGA-AF-2689 TCGA-AF-2690 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-2693 
       24.13        17.95        17.23        10.62        13.55        19.10 
TCGA-AF-3400 TCGA-AF-3911 TCGA-AF-3913 TCGA-AF-4110 TCGA-AF-5654 TCGA-AF-6136 
       12.72        25.02        10.39        14.50         8.45        15.35 
TCGA-AG-3575 TCGA-AG-3581 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 
       12.00         1.02         2.01         1.02         0.99         7.96 
TCGA-AG-3727 TCGA-AG-3731 TCGA-AG-3742 TCGA-AG-3878 TCGA-AG-3892 TCGA-AG-3893 
        0.95         1.02         0.99         0.99         1.02         0.99 
TCGA-AG-3894 TCGA-AG-4001 TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C 
        0.99         1.02         1.02        20.94        13.91         6.02 
TCGA-AG-A00H TCGA-AG-A011 TCGA-AG-A015 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A020 
       25.94        17.03        13.02        12.00        70.03        10.98 
TCGA-AG-A025 TCGA-AG-A02N TCGA-AG-A02X TCGA-AH-6897 TCGA-AH-6903 TCGA-BM-6198 
       49.94        61.94        40.96         4.60         1.81        10.19 
TCGA-CI-6620 TCGA-CI-6622 TCGA-CL-4957 TCGA-DC-4745 TCGA-DC-4749 TCGA-DC-5337 
        6.02         6.94        13.97        10.98        11.01        15.02 
TCGA-DC-5869 TCGA-DC-6154 TCGA-DC-6160 TCGA-DC-6681 TCGA-DT-5265 TCGA-DY-A1DG 
       12.99        12.00        30.05        12.95         5.29        51.48 
TCGA-DY-A1H8 TCGA-EF-5831 TCGA-EI-6506 TCGA-EI-6507 TCGA-EI-6508 TCGA-EI-6510 
       32.58         2.40        20.55        19.96        20.91        18.28 
TCGA-EI-6512 TCGA-EI-6513 TCGA-EI-6881 TCGA-EI-6882 TCGA-EI-6917 TCGA-EI-7002 
       17.69        16.34        16.37         8.61        17.46        11.97 
TCGA-EI-7004 TCGA-F5-6571 TCGA-F5-6810 TCGA-F5-6812 TCGA-F5-6813 TCGA-F5-6814 
        8.45         0.85         0.39         0.66         0.69         0.53 
TCGA-F5-6861 
        1.08 

  AMP PEAK  6(8P11.21) MUTATED AMP PEAK  6(8P11.21) WILD-TYPE 
                          0.46                           0.39 
  AMP PEAK  6(8P11.21) MUTATED AMP PEAK  6(8P11.21) WILD-TYPE 
                        129.27                          70.03 
  AMP PEAK  6(8P11.21) MUTATED AMP PEAK  6(8P11.21) WILD-TYPE 
                         10.39                          11.97 
[1] "0.5 - 129.3 (10.4)" "0.4 - 70.0 (12.0)" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
  "AMP PEAK  6(8P11.21) MUTATED"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-AG-3575                     TCGA-AG-3581 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-3582                     TCGA-AG-3583 
  "AMP PEAK  6(8P11.21) MUTATED" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-3586                     TCGA-AG-3587 
  "AMP PEAK  6(8P11.21) MUTATED" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"AMP PEAK  6(8P11.21) WILD-TYPE"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-AG-3726                     TCGA-AG-3727 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"AMP PEAK  6(8P11.21) WILD-TYPE"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-AG-3887                     TCGA-AG-3892 
  "AMP PEAK  6(8P11.21) MUTATED" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
  "AMP PEAK  6(8P11.21) MUTATED"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-AG-4001                     TCGA-AG-4007 
"AMP PEAK  6(8P11.21) WILD-TYPE"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-AG-4008                     TCGA-AG-4022 
"AMP PEAK  6(8P11.21) WILD-TYPE"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
  "AMP PEAK  6(8P11.21) MUTATED" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
  "AMP PEAK  6(8P11.21) MUTATED" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
  "AMP PEAK  6(8P11.21) MUTATED"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
"AMP PEAK  6(8P11.21) WILD-TYPE"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
"AMP PEAK  6(8P11.21) WILD-TYPE"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"AMP PEAK  6(8P11.21) WILD-TYPE"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"AMP PEAK  6(8P11.21) WILD-TYPE"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
  "AMP PEAK  6(8P11.21) MUTATED" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
"AMP PEAK  6(8P11.21) WILD-TYPE"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-AH-6544                     TCGA-AH-6547 
  "AMP PEAK  6(8P11.21) MUTATED"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-AH-6643                     TCGA-AH-6644 
  "AMP PEAK  6(8P11.21) MUTATED"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-AH-6897                     TCGA-AH-6903 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
"AMP PEAK  6(8P11.21) WILD-TYPE"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
  "AMP PEAK  6(8P11.21) MUTATED"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-CL-4957                     TCGA-CL-5917 
"AMP PEAK  6(8P11.21) WILD-TYPE"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-CL-5918                     TCGA-DC-4745 
  "AMP PEAK  6(8P11.21) MUTATED" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-DC-4749                     TCGA-DC-5337 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-DC-6155                     TCGA-DC-6156 
  "AMP PEAK  6(8P11.21) MUTATED"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-DC-6157                     TCGA-DC-6158 
  "AMP PEAK  6(8P11.21) MUTATED"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-DC-6160                     TCGA-DC-6681 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
  "AMP PEAK  6(8P11.21) MUTATED"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"AMP PEAK  6(8P11.21) WILD-TYPE"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
  "AMP PEAK  6(8P11.21) MUTATED"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
  "AMP PEAK  6(8P11.21) MUTATED"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-EF-5830                     TCGA-EF-5831 
  "AMP PEAK  6(8P11.21) MUTATED" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-EI-6506                     TCGA-EI-6507 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"AMP PEAK  6(8P11.21) WILD-TYPE"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"AMP PEAK  6(8P11.21) WILD-TYPE"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-EI-6512                     TCGA-EI-6513 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-EI-6514                     TCGA-EI-6881 
  "AMP PEAK  6(8P11.21) MUTATED" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"AMP PEAK  6(8P11.21) WILD-TYPE"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-EI-6884                     TCGA-EI-6885 
  "AMP PEAK  6(8P11.21) MUTATED"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-EI-7004                     TCGA-F5-6465 
"AMP PEAK  6(8P11.21) WILD-TYPE"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-F5-6571                     TCGA-F5-6702 
"AMP PEAK  6(8P11.21) WILD-TYPE"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-F5-6810                     TCGA-F5-6811 
"AMP PEAK  6(8P11.21) WILD-TYPE"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-F5-6812                     TCGA-F5-6813 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
  "AMP PEAK  6(8P11.21) MUTATED"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-G5-6233                     TCGA-G5-6235 
  "AMP PEAK  6(8P11.21) MUTATED"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-G5-6572                     TCGA-G5-6641 
  "AMP PEAK  6(8P11.21) MUTATED"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
  "AMP PEAK  6(8P11.21) MUTATED"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-AG-3575                     TCGA-AG-3581 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-3582                     TCGA-AG-3583 
  "AMP PEAK  6(8P11.21) MUTATED" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-3586                     TCGA-AG-3587 
  "AMP PEAK  6(8P11.21) MUTATED" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"AMP PEAK  6(8P11.21) WILD-TYPE"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-AG-3726                     TCGA-AG-3727 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"AMP PEAK  6(8P11.21) WILD-TYPE"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-AG-3887                     TCGA-AG-3892 
  "AMP PEAK  6(8P11.21) MUTATED" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
  "AMP PEAK  6(8P11.21) MUTATED"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-AG-4001                     TCGA-AG-4007 
"AMP PEAK  6(8P11.21) WILD-TYPE"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-AG-4008                     TCGA-AG-4022 
"AMP PEAK  6(8P11.21) WILD-TYPE"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
  "AMP PEAK  6(8P11.21) MUTATED" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
  "AMP PEAK  6(8P11.21) MUTATED" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
  "AMP PEAK  6(8P11.21) MUTATED"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
"AMP PEAK  6(8P11.21) WILD-TYPE"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
"AMP PEAK  6(8P11.21) WILD-TYPE"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"AMP PEAK  6(8P11.21) WILD-TYPE"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"AMP PEAK  6(8P11.21) WILD-TYPE"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
  "AMP PEAK  6(8P11.21) MUTATED" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
"AMP PEAK  6(8P11.21) WILD-TYPE"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-AH-6544                     TCGA-AH-6547 
  "AMP PEAK  6(8P11.21) MUTATED"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-AH-6643                     TCGA-AH-6644 
  "AMP PEAK  6(8P11.21) MUTATED"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-AH-6897                     TCGA-AH-6903 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
"AMP PEAK  6(8P11.21) WILD-TYPE"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
  "AMP PEAK  6(8P11.21) MUTATED"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-CL-4957                     TCGA-CL-5917 
"AMP PEAK  6(8P11.21) WILD-TYPE"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-CL-5918                     TCGA-DC-4745 
  "AMP PEAK  6(8P11.21) MUTATED" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-DC-4749                     TCGA-DC-5337 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-DC-6155                     TCGA-DC-6156 
  "AMP PEAK  6(8P11.21) MUTATED"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-DC-6157                     TCGA-DC-6158 
  "AMP PEAK  6(8P11.21) MUTATED"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-DC-6160                     TCGA-DC-6681 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
  "AMP PEAK  6(8P11.21) MUTATED"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"AMP PEAK  6(8P11.21) WILD-TYPE"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
  "AMP PEAK  6(8P11.21) MUTATED"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
  "AMP PEAK  6(8P11.21) MUTATED"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-EF-5830                     TCGA-EF-5831 
  "AMP PEAK  6(8P11.21) MUTATED" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-EI-6506                     TCGA-EI-6507 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"AMP PEAK  6(8P11.21) WILD-TYPE"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"AMP PEAK  6(8P11.21) WILD-TYPE"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-EI-6512                     TCGA-EI-6513 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-EI-6514                     TCGA-EI-6881 
  "AMP PEAK  6(8P11.21) MUTATED" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"AMP PEAK  6(8P11.21) WILD-TYPE"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-EI-6884                     TCGA-EI-6885 
  "AMP PEAK  6(8P11.21) MUTATED"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-EI-7004                     TCGA-F5-6465 
"AMP PEAK  6(8P11.21) WILD-TYPE"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-F5-6571                     TCGA-F5-6702 
"AMP PEAK  6(8P11.21) WILD-TYPE"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-F5-6810                     TCGA-F5-6811 
"AMP PEAK  6(8P11.21) WILD-TYPE"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-F5-6812                     TCGA-F5-6813 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
  "AMP PEAK  6(8P11.21) MUTATED"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-G5-6233                     TCGA-G5-6235 
  "AMP PEAK  6(8P11.21) MUTATED"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-G5-6572                     TCGA-G5-6641 
  "AMP PEAK  6(8P11.21) MUTATED"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
  "AMP PEAK  6(8P11.21) MUTATED"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-AG-3575                     TCGA-AG-3581 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-3582                     TCGA-AG-3583 
  "AMP PEAK  6(8P11.21) MUTATED" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-3586                     TCGA-AG-3587 
  "AMP PEAK  6(8P11.21) MUTATED" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"AMP PEAK  6(8P11.21) WILD-TYPE"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-AG-3726                     TCGA-AG-3727 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"AMP PEAK  6(8P11.21) WILD-TYPE"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-AG-3887                     TCGA-AG-3892 
  "AMP PEAK  6(8P11.21) MUTATED" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
  "AMP PEAK  6(8P11.21) MUTATED"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-AG-4001                     TCGA-AG-4007 
"AMP PEAK  6(8P11.21) WILD-TYPE"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-AG-4008                     TCGA-AG-4022 
"AMP PEAK  6(8P11.21) WILD-TYPE"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
  "AMP PEAK  6(8P11.21) MUTATED" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
  "AMP PEAK  6(8P11.21) MUTATED" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
  "AMP PEAK  6(8P11.21) MUTATED"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
"AMP PEAK  6(8P11.21) WILD-TYPE"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
"AMP PEAK  6(8P11.21) WILD-TYPE"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"AMP PEAK  6(8P11.21) WILD-TYPE"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"AMP PEAK  6(8P11.21) WILD-TYPE"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
  "AMP PEAK  6(8P11.21) MUTATED" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
"AMP PEAK  6(8P11.21) WILD-TYPE"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-AH-6544                     TCGA-AH-6547 
  "AMP PEAK  6(8P11.21) MUTATED"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-AH-6643                     TCGA-AH-6644 
  "AMP PEAK  6(8P11.21) MUTATED"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-AH-6897                     TCGA-AH-6903 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
"AMP PEAK  6(8P11.21) WILD-TYPE"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
  "AMP PEAK  6(8P11.21) MUTATED"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-CL-4957                     TCGA-CL-5917 
"AMP PEAK  6(8P11.21) WILD-TYPE"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-CL-5918                     TCGA-DC-4745 
  "AMP PEAK  6(8P11.21) MUTATED" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-DC-4749                     TCGA-DC-5337 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-DC-6155                     TCGA-DC-6156 
  "AMP PEAK  6(8P11.21) MUTATED"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-DC-6157                     TCGA-DC-6158 
  "AMP PEAK  6(8P11.21) MUTATED"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-DC-6160                     TCGA-DC-6681 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
  "AMP PEAK  6(8P11.21) MUTATED"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"AMP PEAK  6(8P11.21) WILD-TYPE"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
  "AMP PEAK  6(8P11.21) MUTATED"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
  "AMP PEAK  6(8P11.21) MUTATED"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-EF-5830                     TCGA-EF-5831 
  "AMP PEAK  6(8P11.21) MUTATED" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-EI-6506                     TCGA-EI-6507 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"AMP PEAK  6(8P11.21) WILD-TYPE"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"AMP PEAK  6(8P11.21) WILD-TYPE"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-EI-6512                     TCGA-EI-6513 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-EI-6514                     TCGA-EI-6881 
  "AMP PEAK  6(8P11.21) MUTATED" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"AMP PEAK  6(8P11.21) WILD-TYPE"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-EI-6884                     TCGA-EI-6885 
  "AMP PEAK  6(8P11.21) MUTATED"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-EI-7004                     TCGA-F5-6465 
"AMP PEAK  6(8P11.21) WILD-TYPE"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-F5-6571                     TCGA-F5-6702 
"AMP PEAK  6(8P11.21) WILD-TYPE"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-F5-6810                     TCGA-F5-6811 
"AMP PEAK  6(8P11.21) WILD-TYPE"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-F5-6812                     TCGA-F5-6813 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
  "AMP PEAK  6(8P11.21) MUTATED"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-G5-6233                     TCGA-G5-6235 
  "AMP PEAK  6(8P11.21) MUTATED"   "AMP PEAK  6(8P11.21) MUTATED" 
                    TCGA-G5-6572                     TCGA-G5-6641 
  "AMP PEAK  6(8P11.21) MUTATED"   "AMP PEAK  6(8P11.21) MUTATED" 
[1] "hr=" "1.6"
D6V2, continuous
                                vv
clus                             STAGE I STAGE II STAGE IIA STAGE IIB STAGE IIC
  AMP PEAK  6(8P11.21) MUTATED         8        4        18         1         2
  AMP PEAK  6(8P11.21) WILD-TYPE      22        4        20         1         0
                                vv
clus                             STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  AMP PEAK  6(8P11.21) MUTATED           1          4          7          6
  AMP PEAK  6(8P11.21) WILD-TYPE         4          5         16          8
                                vv
clus                             STAGE IV STAGE IVA
  AMP PEAK  6(8P11.21) MUTATED         12         2
  AMP PEAK  6(8P11.21) WILD-TYPE        5         7
D6V3, multiclass
                                vv
clus                             T1 T2 T3 T4
  AMP PEAK  6(8P11.21) MUTATED    2 11 47  8
  AMP PEAK  6(8P11.21) WILD-TYPE  7 18 62  6
D6V4, multiclass
    clus
vv   AMP PEAK  6(8P11.21) MUTATED AMP PEAK  6(8P11.21) WILD-TYPE
  T1                            2                              7
  T2                           11                             18
  T3                           47                             62
  T4                            8                              6
                                vv
clus                             N0 N1 N2
  AMP PEAK  6(8P11.21) MUTATED   34 18 15
  AMP PEAK  6(8P11.21) WILD-TYPE 49 27 17
D6V5, multiclass
    clus
vv   AMP PEAK  6(8P11.21) MUTATED AMP PEAK  6(8P11.21) WILD-TYPE
  N0                           34                             49
  N1                           18                             27
  N2                           15                             17
                                vv
clus                             M0 M1 M1A MX
  AMP PEAK  6(8P11.21) MUTATED   47 13   1  7
  AMP PEAK  6(8P11.21) WILD-TYPE 76  9   1  6
D6V6, multiclass
     clus
vv    AMP PEAK  6(8P11.21) MUTATED AMP PEAK  6(8P11.21) WILD-TYPE
  M0                            47                             76
  M1                            13                              9
  M1A                            1                              1
  MX                             7                              6
D6V7, binary
                                cls
clus                              0  1
  AMP PEAK  6(8P11.21) MUTATED   30 39
  AMP PEAK  6(8P11.21) WILD-TYPE 44 49
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  6(8P11.21) MUTATED     30   39
  AMP PEAK  6(8P11.21) WILD-TYPE   44   49
        clus
vv       AMP PEAK  6(8P11.21) MUTATED AMP PEAK  6(8P11.21) WILD-TYPE
  FEMALE                           30                             44
  MALE                             39                             49
D6V8, binary
                                cls
clus                              0  1
  AMP PEAK  6(8P11.21) MUTATED   64  3
  AMP PEAK  6(8P11.21) WILD-TYPE 79 10
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  6(8P11.21) MUTATED     64    3
  AMP PEAK  6(8P11.21) WILD-TYPE   79   10
                                clus
vv                               AMP PEAK  6(8P11.21) MUTATED
  RECTAL ADENOCARCINOMA                                    64
  RECTAL MUCINOUS ADENOCARCINOMA                            3
                                clus
vv                               AMP PEAK  6(8P11.21) WILD-TYPE
  RECTAL ADENOCARCINOMA                                      79
  RECTAL MUCINOUS ADENOCARCINOMA                             10
D6V9, binary
                                cls
clus                              0  1
  AMP PEAK  6(8P11.21) MUTATED    1 68
  AMP PEAK  6(8P11.21) WILD-TYPE  5 88
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  6(8P11.21) MUTATED      1   68
  AMP PEAK  6(8P11.21) WILD-TYPE    5   88
     clus
vv    AMP PEAK  6(8P11.21) MUTATED AMP PEAK  6(8P11.21) WILD-TYPE
  NO                             1                              5
  YES                           68                             88
                                vv
clus                             R0 R1 R2 RX
  AMP PEAK  6(8P11.21) MUTATED   41  2  9  2
  AMP PEAK  6(8P11.21) WILD-TYPE 80  0  3  1
D6V10, multiclass
    clus
vv   AMP PEAK  6(8P11.21) MUTATED AMP PEAK  6(8P11.21) WILD-TYPE
  R0                           41                             80
  R1                            2                              0
  R2                            9                              3
  RX                            2                              1
D6V11, continuous

Clustering(7) Variable = AMP PEAK  7(8Q24.21) MUTATION ANALYSIS
D7V1, survival
                                sevent
clus2                             0  1
  AMP PEAK  7(8Q24.21) MUTATED   75 11
  AMP PEAK  7(8Q24.21) WILD-TYPE 42  2
  AMP PEAK  7(8Q24.21) MUTATED AMP PEAK  7(8Q24.21) WILD-TYPE 
                            86                             44 
  AMP PEAK  7(8Q24.21) MUTATED AMP PEAK  7(8Q24.21) WILD-TYPE 
                            11                              2 
$`AMP PEAK  7(8Q24.21) MUTATED`
TCGA-AF-2687 TCGA-AF-2689 TCGA-AF-2690 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 
       24.13        17.95        17.23        10.62        13.55        12.72 
TCGA-AF-3911 TCGA-AF-3913 TCGA-AF-5654 TCGA-AF-6655 TCGA-AF-6672 TCGA-AG-3582 
       25.02        10.39         8.45        11.67        10.39         1.02 
TCGA-AG-3586 TCGA-AG-3587 TCGA-AG-3605 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3731 
        1.02         1.02         0.99         7.96         0.95         1.02 
TCGA-AG-3742 TCGA-AG-3883 TCGA-AG-3887 TCGA-AG-3896 TCGA-AG-3999 TCGA-AG-4001 
        0.99         1.02         0.92         1.02         1.02         1.02 
TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-4022 TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 
        1.02         1.02         0.99        25.94        23.01        17.03 
TCGA-AG-A014 TCGA-AG-A016 TCGA-AG-A01J TCGA-AG-A01N TCGA-AG-A01W TCGA-AG-A01Y 
       15.91         1.02         1.02        12.00        70.03        63.98 
TCGA-AG-A023 TCGA-AG-A026 TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AH-6544 
       51.98         1.94        61.94        40.96        38.01         0.49 
TCGA-AH-6547 TCGA-AH-6643 TCGA-AH-6644 TCGA-BM-6198 TCGA-CI-6619 TCGA-CI-6623 
        1.45         0.69         0.72        10.19         6.02         9.37 
TCGA-CI-6624 TCGA-CL-5917 TCGA-CL-5918 TCGA-DC-4745 TCGA-DC-4749 TCGA-DC-5869 
        4.70        60.00         7.99        10.98        11.01        12.99 
TCGA-DC-6154 TCGA-DC-6155 TCGA-DC-6156 TCGA-DC-6157 TCGA-DC-6158 TCGA-DC-6682 
       12.00        14.01        15.02        36.00         6.97        13.02 
TCGA-DC-6683 TCGA-DY-A0XA TCGA-DY-A1DC TCGA-DY-A1DD TCGA-DY-A1DF TCGA-DY-A1H8 
       10.06       126.41        41.33        57.24        24.13        32.58 
TCGA-EF-5830 TCGA-EF-5831 TCGA-EI-6509 TCGA-EI-6511 TCGA-EI-6513 TCGA-EI-6514 
        0.49         2.40        17.00        15.85        16.34        16.31 
TCGA-EI-6883 TCGA-EI-6884 TCGA-EI-6885 TCGA-F5-6465 TCGA-F5-6702 TCGA-F5-6810 
       11.51        10.78        13.61         3.39         2.17         0.39 
TCGA-F5-6811 TCGA-F5-6814 TCGA-F5-6863 TCGA-F5-6864 TCGA-G5-6233 TCGA-G5-6235 
        1.02         0.53         0.76         0.46        18.25        55.76 
TCGA-G5-6572 TCGA-G5-6641 
       47.08        26.43 

$`AMP PEAK  7(8Q24.21) WILD-TYPE`
TCGA-AF-2693 TCGA-AF-4110 TCGA-AF-6136 TCGA-AG-3575 TCGA-AG-3581 TCGA-AG-3583 
       19.10        14.50        15.35        12.00         1.02         2.01 
TCGA-AG-3599 TCGA-AG-3878 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-A002 
        0.99         0.99         1.02         0.99         0.99        20.94 
TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A015 TCGA-AG-A01L TCGA-AG-A020 TCGA-AG-A025 
       13.91         6.02        13.02        12.00        10.98        49.94 
TCGA-AG-A02G TCGA-AH-6897 TCGA-AH-6903 TCGA-CI-6620 TCGA-CI-6622 TCGA-CL-4957 
       38.93         4.60         1.81         6.02         6.94        13.97 
TCGA-DC-5337 TCGA-DC-6160 TCGA-DC-6681 TCGA-DT-5265 TCGA-DY-A1DE TCGA-DY-A1DG 
       15.02        30.05        12.95         5.29       129.27        51.48 
TCGA-EI-6506 TCGA-EI-6507 TCGA-EI-6508 TCGA-EI-6510 TCGA-EI-6512 TCGA-EI-6881 
       20.55        19.96        20.91        18.28        17.69        16.37 
TCGA-EI-6882 TCGA-EI-6917 TCGA-EI-7002 TCGA-EI-7004 TCGA-F5-6571 TCGA-F5-6812 
        8.61        17.46        11.97         8.45         0.85         0.66 
TCGA-F5-6813 TCGA-F5-6861 
        0.69         1.08 

  AMP PEAK  7(8Q24.21) MUTATED AMP PEAK  7(8Q24.21) WILD-TYPE 
                          0.39                           0.66 
  AMP PEAK  7(8Q24.21) MUTATED AMP PEAK  7(8Q24.21) WILD-TYPE 
                        126.41                         129.27 
  AMP PEAK  7(8Q24.21) MUTATED AMP PEAK  7(8Q24.21) WILD-TYPE 
                          10.7                           12.0 
[1] "0.4 - 126.4 (10.7)" "0.7 - 129.3 (12.0)"
                    TCGA-AF-2687                     TCGA-AF-2689 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-AF-2690                     TCGA-AF-2691 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-AF-2692                     TCGA-AF-2693 
  "AMP PEAK  7(8Q24.21) MUTATED" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-AF-3913                     TCGA-AF-4110 
  "AMP PEAK  7(8Q24.21) MUTATED" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
  "AMP PEAK  7(8Q24.21) MUTATED" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-AG-3575                     TCGA-AG-3581 
"AMP PEAK  7(8Q24.21) WILD-TYPE" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-AG-3582                     TCGA-AG-3583 
  "AMP PEAK  7(8Q24.21) MUTATED" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-AG-3586                     TCGA-AG-3587 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"AMP PEAK  7(8Q24.21) WILD-TYPE"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-AG-3726                     TCGA-AG-3727 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-AG-3731                     TCGA-AG-3742 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"AMP PEAK  7(8Q24.21) WILD-TYPE"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-AG-3887                     TCGA-AG-3892 
  "AMP PEAK  7(8Q24.21) MUTATED" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"AMP PEAK  7(8Q24.21) WILD-TYPE" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-AG-4001                     TCGA-AG-4007 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-AG-4008                     TCGA-AG-4022 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"AMP PEAK  7(8Q24.21) WILD-TYPE" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
"AMP PEAK  7(8Q24.21) WILD-TYPE"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-AG-A014                     TCGA-AG-A015 
  "AMP PEAK  7(8Q24.21) MUTATED" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
"AMP PEAK  7(8Q24.21) WILD-TYPE"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"AMP PEAK  7(8Q24.21) WILD-TYPE"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"AMP PEAK  7(8Q24.21) WILD-TYPE"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
"AMP PEAK  7(8Q24.21) WILD-TYPE"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-AH-6544                     TCGA-AH-6547 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-AH-6643                     TCGA-AH-6644 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-AH-6897                     TCGA-AH-6903 
"AMP PEAK  7(8Q24.21) WILD-TYPE" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"AMP PEAK  7(8Q24.21) WILD-TYPE" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-CL-4957                     TCGA-CL-5917 
"AMP PEAK  7(8Q24.21) WILD-TYPE"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-CL-5918                     TCGA-DC-4745 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-DC-4749                     TCGA-DC-5337 
  "AMP PEAK  7(8Q24.21) MUTATED" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-DC-6155                     TCGA-DC-6156 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-DC-6157                     TCGA-DC-6158 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-DC-6160                     TCGA-DC-6681 
"AMP PEAK  7(8Q24.21) WILD-TYPE" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"AMP PEAK  7(8Q24.21) WILD-TYPE"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
"AMP PEAK  7(8Q24.21) WILD-TYPE"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
"AMP PEAK  7(8Q24.21) WILD-TYPE"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-EF-5830                     TCGA-EF-5831 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-EI-6506                     TCGA-EI-6507 
"AMP PEAK  7(8Q24.21) WILD-TYPE" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"AMP PEAK  7(8Q24.21) WILD-TYPE"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"AMP PEAK  7(8Q24.21) WILD-TYPE"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-EI-6512                     TCGA-EI-6513 
"AMP PEAK  7(8Q24.21) WILD-TYPE"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-EI-6514                     TCGA-EI-6881 
  "AMP PEAK  7(8Q24.21) MUTATED" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"AMP PEAK  7(8Q24.21) WILD-TYPE"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-EI-6884                     TCGA-EI-6885 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"AMP PEAK  7(8Q24.21) WILD-TYPE" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-EI-7004                     TCGA-F5-6465 
"AMP PEAK  7(8Q24.21) WILD-TYPE"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-F5-6571                     TCGA-F5-6702 
"AMP PEAK  7(8Q24.21) WILD-TYPE"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-F5-6810                     TCGA-F5-6811 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-F5-6812                     TCGA-F5-6813 
"AMP PEAK  7(8Q24.21) WILD-TYPE" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
  "AMP PEAK  7(8Q24.21) MUTATED" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-G5-6233                     TCGA-G5-6235 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-G5-6572                     TCGA-G5-6641 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-AF-2687                     TCGA-AF-2689 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-AF-2690                     TCGA-AF-2691 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-AF-2692                     TCGA-AF-2693 
  "AMP PEAK  7(8Q24.21) MUTATED" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-AF-3913                     TCGA-AF-4110 
  "AMP PEAK  7(8Q24.21) MUTATED" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
  "AMP PEAK  7(8Q24.21) MUTATED" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-AG-3575                     TCGA-AG-3581 
"AMP PEAK  7(8Q24.21) WILD-TYPE" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-AG-3582                     TCGA-AG-3583 
  "AMP PEAK  7(8Q24.21) MUTATED" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-AG-3586                     TCGA-AG-3587 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"AMP PEAK  7(8Q24.21) WILD-TYPE"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-AG-3726                     TCGA-AG-3727 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-AG-3731                     TCGA-AG-3742 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"AMP PEAK  7(8Q24.21) WILD-TYPE"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-AG-3887                     TCGA-AG-3892 
  "AMP PEAK  7(8Q24.21) MUTATED" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"AMP PEAK  7(8Q24.21) WILD-TYPE" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-AG-4001                     TCGA-AG-4007 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-AG-4008                     TCGA-AG-4022 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"AMP PEAK  7(8Q24.21) WILD-TYPE" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
"AMP PEAK  7(8Q24.21) WILD-TYPE"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-AG-A014                     TCGA-AG-A015 
  "AMP PEAK  7(8Q24.21) MUTATED" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
"AMP PEAK  7(8Q24.21) WILD-TYPE"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"AMP PEAK  7(8Q24.21) WILD-TYPE"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"AMP PEAK  7(8Q24.21) WILD-TYPE"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
"AMP PEAK  7(8Q24.21) WILD-TYPE"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-AH-6544                     TCGA-AH-6547 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-AH-6643                     TCGA-AH-6644 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-AH-6897                     TCGA-AH-6903 
"AMP PEAK  7(8Q24.21) WILD-TYPE" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"AMP PEAK  7(8Q24.21) WILD-TYPE" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-CL-4957                     TCGA-CL-5917 
"AMP PEAK  7(8Q24.21) WILD-TYPE"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-CL-5918                     TCGA-DC-4745 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-DC-4749                     TCGA-DC-5337 
  "AMP PEAK  7(8Q24.21) MUTATED" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-DC-6155                     TCGA-DC-6156 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-DC-6157                     TCGA-DC-6158 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-DC-6160                     TCGA-DC-6681 
"AMP PEAK  7(8Q24.21) WILD-TYPE" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"AMP PEAK  7(8Q24.21) WILD-TYPE"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
"AMP PEAK  7(8Q24.21) WILD-TYPE"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
"AMP PEAK  7(8Q24.21) WILD-TYPE"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-EF-5830                     TCGA-EF-5831 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-EI-6506                     TCGA-EI-6507 
"AMP PEAK  7(8Q24.21) WILD-TYPE" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"AMP PEAK  7(8Q24.21) WILD-TYPE"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"AMP PEAK  7(8Q24.21) WILD-TYPE"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-EI-6512                     TCGA-EI-6513 
"AMP PEAK  7(8Q24.21) WILD-TYPE"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-EI-6514                     TCGA-EI-6881 
  "AMP PEAK  7(8Q24.21) MUTATED" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"AMP PEAK  7(8Q24.21) WILD-TYPE"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-EI-6884                     TCGA-EI-6885 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"AMP PEAK  7(8Q24.21) WILD-TYPE" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-EI-7004                     TCGA-F5-6465 
"AMP PEAK  7(8Q24.21) WILD-TYPE"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-F5-6571                     TCGA-F5-6702 
"AMP PEAK  7(8Q24.21) WILD-TYPE"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-F5-6810                     TCGA-F5-6811 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-F5-6812                     TCGA-F5-6813 
"AMP PEAK  7(8Q24.21) WILD-TYPE" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
  "AMP PEAK  7(8Q24.21) MUTATED" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-G5-6233                     TCGA-G5-6235 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-G5-6572                     TCGA-G5-6641 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-AF-2687                     TCGA-AF-2689 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-AF-2690                     TCGA-AF-2691 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-AF-2692                     TCGA-AF-2693 
  "AMP PEAK  7(8Q24.21) MUTATED" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-AF-3913                     TCGA-AF-4110 
  "AMP PEAK  7(8Q24.21) MUTATED" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
  "AMP PEAK  7(8Q24.21) MUTATED" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-AG-3575                     TCGA-AG-3581 
"AMP PEAK  7(8Q24.21) WILD-TYPE" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-AG-3582                     TCGA-AG-3583 
  "AMP PEAK  7(8Q24.21) MUTATED" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-AG-3586                     TCGA-AG-3587 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"AMP PEAK  7(8Q24.21) WILD-TYPE"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-AG-3726                     TCGA-AG-3727 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-AG-3731                     TCGA-AG-3742 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"AMP PEAK  7(8Q24.21) WILD-TYPE"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-AG-3887                     TCGA-AG-3892 
  "AMP PEAK  7(8Q24.21) MUTATED" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"AMP PEAK  7(8Q24.21) WILD-TYPE" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-AG-4001                     TCGA-AG-4007 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-AG-4008                     TCGA-AG-4022 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"AMP PEAK  7(8Q24.21) WILD-TYPE" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
"AMP PEAK  7(8Q24.21) WILD-TYPE"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-AG-A014                     TCGA-AG-A015 
  "AMP PEAK  7(8Q24.21) MUTATED" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
"AMP PEAK  7(8Q24.21) WILD-TYPE"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"AMP PEAK  7(8Q24.21) WILD-TYPE"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"AMP PEAK  7(8Q24.21) WILD-TYPE"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
"AMP PEAK  7(8Q24.21) WILD-TYPE"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-AH-6544                     TCGA-AH-6547 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-AH-6643                     TCGA-AH-6644 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-AH-6897                     TCGA-AH-6903 
"AMP PEAK  7(8Q24.21) WILD-TYPE" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"AMP PEAK  7(8Q24.21) WILD-TYPE" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-CL-4957                     TCGA-CL-5917 
"AMP PEAK  7(8Q24.21) WILD-TYPE"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-CL-5918                     TCGA-DC-4745 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-DC-4749                     TCGA-DC-5337 
  "AMP PEAK  7(8Q24.21) MUTATED" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-DC-6155                     TCGA-DC-6156 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-DC-6157                     TCGA-DC-6158 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-DC-6160                     TCGA-DC-6681 
"AMP PEAK  7(8Q24.21) WILD-TYPE" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"AMP PEAK  7(8Q24.21) WILD-TYPE"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
"AMP PEAK  7(8Q24.21) WILD-TYPE"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
"AMP PEAK  7(8Q24.21) WILD-TYPE"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-EF-5830                     TCGA-EF-5831 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-EI-6506                     TCGA-EI-6507 
"AMP PEAK  7(8Q24.21) WILD-TYPE" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"AMP PEAK  7(8Q24.21) WILD-TYPE"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"AMP PEAK  7(8Q24.21) WILD-TYPE"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-EI-6512                     TCGA-EI-6513 
"AMP PEAK  7(8Q24.21) WILD-TYPE"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-EI-6514                     TCGA-EI-6881 
  "AMP PEAK  7(8Q24.21) MUTATED" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"AMP PEAK  7(8Q24.21) WILD-TYPE"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-EI-6884                     TCGA-EI-6885 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"AMP PEAK  7(8Q24.21) WILD-TYPE" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-EI-7004                     TCGA-F5-6465 
"AMP PEAK  7(8Q24.21) WILD-TYPE"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-F5-6571                     TCGA-F5-6702 
"AMP PEAK  7(8Q24.21) WILD-TYPE"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-F5-6810                     TCGA-F5-6811 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-F5-6812                     TCGA-F5-6813 
"AMP PEAK  7(8Q24.21) WILD-TYPE" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
  "AMP PEAK  7(8Q24.21) MUTATED" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-G5-6233                     TCGA-G5-6235 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
                    TCGA-G5-6572                     TCGA-G5-6641 
  "AMP PEAK  7(8Q24.21) MUTATED"   "AMP PEAK  7(8Q24.21) MUTATED" 
[1] "hr=" "2"  
D7V2, continuous
                                vv
clus                             STAGE I STAGE II STAGE IIA STAGE IIB STAGE IIC
  AMP PEAK  7(8Q24.21) MUTATED        16        6        28         1         2
  AMP PEAK  7(8Q24.21) WILD-TYPE      14        2        10         1         0
                                vv
clus                             STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  AMP PEAK  7(8Q24.21) MUTATED           3          5         13         11
  AMP PEAK  7(8Q24.21) WILD-TYPE         2          4         10          3
                                vv
clus                             STAGE IV STAGE IVA
  AMP PEAK  7(8Q24.21) MUTATED         14         3
  AMP PEAK  7(8Q24.21) WILD-TYPE        3         6
D7V3, multiclass
                                vv
clus                             T1 T2 T3 T4
  AMP PEAK  7(8Q24.21) MUTATED    4 18 74 10
  AMP PEAK  7(8Q24.21) WILD-TYPE  5 11 35  4
D7V4, multiclass
    clus
vv   AMP PEAK  7(8Q24.21) MUTATED AMP PEAK  7(8Q24.21) WILD-TYPE
  T1                            4                              5
  T2                           18                             11
  T3                           74                             35
  T4                           10                              4
                                vv
clus                             N0 N1 N2
  AMP PEAK  7(8Q24.21) MUTATED   54 28 23
  AMP PEAK  7(8Q24.21) WILD-TYPE 29 17  9
D7V5, multiclass
    clus
vv   AMP PEAK  7(8Q24.21) MUTATED AMP PEAK  7(8Q24.21) WILD-TYPE
  N0                           54                             29
  N1                           28                             17
  N2                           23                              9
                                vv
clus                             M0 M1 M1A MX
  AMP PEAK  7(8Q24.21) MUTATED   78 17   1  9
  AMP PEAK  7(8Q24.21) WILD-TYPE 45  5   1  4
D7V6, multiclass
     clus
vv    AMP PEAK  7(8Q24.21) MUTATED AMP PEAK  7(8Q24.21) WILD-TYPE
  M0                            78                             45
  M1                            17                              5
  M1A                            1                              1
  MX                             9                              4
D7V7, binary
                                cls
clus                              0  1
  AMP PEAK  7(8Q24.21) MUTATED   48 59
  AMP PEAK  7(8Q24.21) WILD-TYPE 26 29
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  7(8Q24.21) MUTATED     48   59
  AMP PEAK  7(8Q24.21) WILD-TYPE   26   29
        clus
vv       AMP PEAK  7(8Q24.21) MUTATED AMP PEAK  7(8Q24.21) WILD-TYPE
  FEMALE                           48                             26
  MALE                             59                             29
D7V8, binary
                                cls
clus                              0  1
  AMP PEAK  7(8Q24.21) MUTATED   99  5
  AMP PEAK  7(8Q24.21) WILD-TYPE 44  8
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  7(8Q24.21) MUTATED     99    5
  AMP PEAK  7(8Q24.21) WILD-TYPE   44    8
                                clus
vv                               AMP PEAK  7(8Q24.21) MUTATED
  RECTAL ADENOCARCINOMA                                    99
  RECTAL MUCINOUS ADENOCARCINOMA                            5
                                clus
vv                               AMP PEAK  7(8Q24.21) WILD-TYPE
  RECTAL ADENOCARCINOMA                                      44
  RECTAL MUCINOUS ADENOCARCINOMA                              8
D7V9, binary
                                cls
clus                               0   1
  AMP PEAK  7(8Q24.21) MUTATED     5 102
  AMP PEAK  7(8Q24.21) WILD-TYPE   1  54
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  7(8Q24.21) MUTATED      5  102
  AMP PEAK  7(8Q24.21) WILD-TYPE    1   54
     clus
vv    AMP PEAK  7(8Q24.21) MUTATED AMP PEAK  7(8Q24.21) WILD-TYPE
  NO                             5                              1
  YES                          102                             54
                                vv
clus                             R0 R1 R2 RX
  AMP PEAK  7(8Q24.21) MUTATED   76  2 10  2
  AMP PEAK  7(8Q24.21) WILD-TYPE 45  0  2  1
D7V10, multiclass
    clus
vv   AMP PEAK  7(8Q24.21) MUTATED AMP PEAK  7(8Q24.21) WILD-TYPE
  R0                           76                             45
  R1                            2                              0
  R2                           10                              2
  RX                            2                              1
D7V11, continuous

Clustering(8) Variable = AMP PEAK  8(10Q22.2) MUTATION ANALYSIS
D8V1, survival
                                sevent
clus2                              0   1
  AMP PEAK  8(10Q22.2) MUTATED     9   0
  AMP PEAK  8(10Q22.2) WILD-TYPE 108  13
  AMP PEAK  8(10Q22.2) MUTATED AMP PEAK  8(10Q22.2) WILD-TYPE 
                             9                            121 
  AMP PEAK  8(10Q22.2) MUTATED AMP PEAK  8(10Q22.2) WILD-TYPE 
                             0                             13 
$`AMP PEAK  8(10Q22.2) MUTATED`
TCGA-AF-2689 TCGA-AG-3587 TCGA-AG-3999 TCGA-AG-A014 TCGA-AG-A01W TCGA-AG-A020 
       17.95         1.02         1.02        15.91        70.03        10.98 
TCGA-BM-6198 TCGA-CI-6619 TCGA-DC-4745 
       10.19         6.02        10.98 

$`AMP PEAK  8(10Q22.2) WILD-TYPE`
TCGA-AF-2687 TCGA-AF-2690 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-2693 TCGA-AF-3400 
       24.13        17.23        10.62        13.55        19.10        12.72 
TCGA-AF-3911 TCGA-AF-3913 TCGA-AF-4110 TCGA-AF-5654 TCGA-AF-6136 TCGA-AF-6655 
       25.02        10.39        14.50         8.45        15.35        11.67 
TCGA-AF-6672 TCGA-AG-3575 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3586 
       10.39        12.00         1.02         1.02         2.01         1.02 
TCGA-AG-3599 TCGA-AG-3605 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3731 TCGA-AG-3742 
        0.99         0.99         7.96         0.95         1.02         0.99 
TCGA-AG-3878 TCGA-AG-3883 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 
        0.99         1.02         0.92         1.02         0.99         0.99 
TCGA-AG-3896 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-4022 TCGA-AG-A002 
        1.02         1.02         1.02         1.02         0.99        20.94 
TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A015 
       13.91         6.02        25.94        23.01        17.03        13.02 
TCGA-AG-A016 TCGA-AG-A01J TCGA-AG-A01L TCGA-AG-A01N TCGA-AG-A01Y TCGA-AG-A023 
        1.02         1.02        12.00        12.00        63.98        51.98 
TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 
       49.94         1.94        38.93        61.94        40.96        38.01 
TCGA-AH-6544 TCGA-AH-6547 TCGA-AH-6643 TCGA-AH-6644 TCGA-AH-6897 TCGA-AH-6903 
        0.49         1.45         0.69         0.72         4.60         1.81 
TCGA-CI-6620 TCGA-CI-6622 TCGA-CI-6623 TCGA-CI-6624 TCGA-CL-4957 TCGA-CL-5917 
        6.02         6.94         9.37         4.70        13.97        60.00 
TCGA-CL-5918 TCGA-DC-4749 TCGA-DC-5337 TCGA-DC-5869 TCGA-DC-6154 TCGA-DC-6155 
        7.99        11.01        15.02        12.99        12.00        14.01 
TCGA-DC-6156 TCGA-DC-6157 TCGA-DC-6158 TCGA-DC-6160 TCGA-DC-6681 TCGA-DC-6682 
       15.02        36.00         6.97        30.05        12.95        13.02 
TCGA-DC-6683 TCGA-DT-5265 TCGA-DY-A0XA TCGA-DY-A1DC TCGA-DY-A1DD TCGA-DY-A1DE 
       10.06         5.29       126.41        41.33        57.24       129.27 
TCGA-DY-A1DF TCGA-DY-A1DG TCGA-DY-A1H8 TCGA-EF-5830 TCGA-EF-5831 TCGA-EI-6506 
       24.13        51.48        32.58         0.49         2.40        20.55 
TCGA-EI-6507 TCGA-EI-6508 TCGA-EI-6509 TCGA-EI-6510 TCGA-EI-6511 TCGA-EI-6512 
       19.96        20.91        17.00        18.28        15.85        17.69 
TCGA-EI-6513 TCGA-EI-6514 TCGA-EI-6881 TCGA-EI-6882 TCGA-EI-6883 TCGA-EI-6884 
       16.34        16.31        16.37         8.61        11.51        10.78 
TCGA-EI-6885 TCGA-EI-6917 TCGA-EI-7002 TCGA-EI-7004 TCGA-F5-6465 TCGA-F5-6571 
       13.61        17.46        11.97         8.45         3.39         0.85 
TCGA-F5-6702 TCGA-F5-6810 TCGA-F5-6811 TCGA-F5-6812 TCGA-F5-6813 TCGA-F5-6814 
        2.17         0.39         1.02         0.66         0.69         0.53 
TCGA-F5-6861 TCGA-F5-6863 TCGA-F5-6864 TCGA-G5-6233 TCGA-G5-6235 TCGA-G5-6572 
        1.08         0.76         0.46        18.25        55.76        47.08 
TCGA-G5-6641 
       26.43 

  AMP PEAK  8(10Q22.2) MUTATED AMP PEAK  8(10Q22.2) WILD-TYPE 
                          1.02                           0.39 
  AMP PEAK  8(10Q22.2) MUTATED AMP PEAK  8(10Q22.2) WILD-TYPE 
                         70.03                         129.27 
  AMP PEAK  8(10Q22.2) MUTATED AMP PEAK  8(10Q22.2) WILD-TYPE 
                         10.98                          11.51 
[1] "1.0 - 70.0 (11.0)"  "0.4 - 129.3 (11.5)"
                    TCGA-AF-2687                     TCGA-AF-2689 
"AMP PEAK  8(10Q22.2) WILD-TYPE"   "AMP PEAK  8(10Q22.2) MUTATED" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-3575                     TCGA-AG-3581 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-3582                     TCGA-AG-3583 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"AMP PEAK  8(10Q22.2) WILD-TYPE"   "AMP PEAK  8(10Q22.2) MUTATED" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
"AMP PEAK  8(10Q22.2) WILD-TYPE"   "AMP PEAK  8(10Q22.2) MUTATED" 
                    TCGA-AG-4001                     TCGA-AG-4007 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-4008                     TCGA-AG-4022 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
  "AMP PEAK  8(10Q22.2) MUTATED" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
  "AMP PEAK  8(10Q22.2) MUTATED" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-A020                     TCGA-AG-A023 
  "AMP PEAK  8(10Q22.2) MUTATED" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AH-6544                     TCGA-AH-6547 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AH-6897                     TCGA-AH-6903 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
  "AMP PEAK  8(10Q22.2) MUTATED"   "AMP PEAK  8(10Q22.2) MUTATED" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-CL-4957                     TCGA-CL-5917 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-CL-5918                     TCGA-DC-4745 
"AMP PEAK  8(10Q22.2) WILD-TYPE"   "AMP PEAK  8(10Q22.2) MUTATED" 
                    TCGA-DC-4749                     TCGA-DC-5337 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-DC-6155                     TCGA-DC-6156 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-DC-6157                     TCGA-DC-6158 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-DC-6160                     TCGA-DC-6681 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-EF-5830                     TCGA-EF-5831 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-EI-6506                     TCGA-EI-6507 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-EI-6512                     TCGA-EI-6513 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-EI-6514                     TCGA-EI-6881 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-EI-6884                     TCGA-EI-6885 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-EI-7004                     TCGA-F5-6465 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-F5-6571                     TCGA-F5-6702 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-F5-6810                     TCGA-F5-6811 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-F5-6812                     TCGA-F5-6813 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-G5-6233                     TCGA-G5-6235 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"AMP PEAK  8(10Q22.2) WILD-TYPE"   "AMP PEAK  8(10Q22.2) MUTATED" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-3575                     TCGA-AG-3581 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-3582                     TCGA-AG-3583 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"AMP PEAK  8(10Q22.2) WILD-TYPE"   "AMP PEAK  8(10Q22.2) MUTATED" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
"AMP PEAK  8(10Q22.2) WILD-TYPE"   "AMP PEAK  8(10Q22.2) MUTATED" 
                    TCGA-AG-4001                     TCGA-AG-4007 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-4008                     TCGA-AG-4022 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
  "AMP PEAK  8(10Q22.2) MUTATED" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
  "AMP PEAK  8(10Q22.2) MUTATED" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-A020                     TCGA-AG-A023 
  "AMP PEAK  8(10Q22.2) MUTATED" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AH-6544                     TCGA-AH-6547 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AH-6897                     TCGA-AH-6903 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
  "AMP PEAK  8(10Q22.2) MUTATED"   "AMP PEAK  8(10Q22.2) MUTATED" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-CL-4957                     TCGA-CL-5917 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-CL-5918                     TCGA-DC-4745 
"AMP PEAK  8(10Q22.2) WILD-TYPE"   "AMP PEAK  8(10Q22.2) MUTATED" 
                    TCGA-DC-4749                     TCGA-DC-5337 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-DC-6155                     TCGA-DC-6156 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-DC-6157                     TCGA-DC-6158 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-DC-6160                     TCGA-DC-6681 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-EF-5830                     TCGA-EF-5831 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-EI-6506                     TCGA-EI-6507 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-EI-6512                     TCGA-EI-6513 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-EI-6514                     TCGA-EI-6881 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-EI-6884                     TCGA-EI-6885 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-EI-7004                     TCGA-F5-6465 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-F5-6571                     TCGA-F5-6702 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-F5-6810                     TCGA-F5-6811 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-F5-6812                     TCGA-F5-6813 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-G5-6233                     TCGA-G5-6235 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"AMP PEAK  8(10Q22.2) WILD-TYPE"   "AMP PEAK  8(10Q22.2) MUTATED" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-3575                     TCGA-AG-3581 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-3582                     TCGA-AG-3583 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"AMP PEAK  8(10Q22.2) WILD-TYPE"   "AMP PEAK  8(10Q22.2) MUTATED" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
"AMP PEAK  8(10Q22.2) WILD-TYPE"   "AMP PEAK  8(10Q22.2) MUTATED" 
                    TCGA-AG-4001                     TCGA-AG-4007 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-4008                     TCGA-AG-4022 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
  "AMP PEAK  8(10Q22.2) MUTATED" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
  "AMP PEAK  8(10Q22.2) MUTATED" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-A020                     TCGA-AG-A023 
  "AMP PEAK  8(10Q22.2) MUTATED" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AH-6544                     TCGA-AH-6547 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AH-6897                     TCGA-AH-6903 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
  "AMP PEAK  8(10Q22.2) MUTATED"   "AMP PEAK  8(10Q22.2) MUTATED" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-CL-4957                     TCGA-CL-5917 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-CL-5918                     TCGA-DC-4745 
"AMP PEAK  8(10Q22.2) WILD-TYPE"   "AMP PEAK  8(10Q22.2) MUTATED" 
                    TCGA-DC-4749                     TCGA-DC-5337 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-DC-6155                     TCGA-DC-6156 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-DC-6157                     TCGA-DC-6158 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-DC-6160                     TCGA-DC-6681 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-EF-5830                     TCGA-EF-5831 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-EI-6506                     TCGA-EI-6507 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-EI-6512                     TCGA-EI-6513 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-EI-6514                     TCGA-EI-6881 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-EI-6884                     TCGA-EI-6885 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-EI-7004                     TCGA-F5-6465 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-F5-6571                     TCGA-F5-6702 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-F5-6810                     TCGA-F5-6811 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-F5-6812                     TCGA-F5-6813 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-G5-6233                     TCGA-G5-6235 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
[1] "hr="     "7.6e+07"
D8V2, continuous
                                vv
clus                             STAGE I STAGE II STAGE IIA STAGE IIB STAGE IIC
  AMP PEAK  8(10Q22.2) MUTATED         2        1         2         0         0
  AMP PEAK  8(10Q22.2) WILD-TYPE      28        7        36         2         2
                                vv
clus                             STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  AMP PEAK  8(10Q22.2) MUTATED           1          0          2          1
  AMP PEAK  8(10Q22.2) WILD-TYPE         4          9         21         13
                                vv
clus                             STAGE IV STAGE IVA
  AMP PEAK  8(10Q22.2) MUTATED          2         0
  AMP PEAK  8(10Q22.2) WILD-TYPE       15         9
D8V3, multiclass
                                vv
clus                              T1  T2  T3  T4
  AMP PEAK  8(10Q22.2) MUTATED     0   2   9   0
  AMP PEAK  8(10Q22.2) WILD-TYPE   9  27 100  14
D8V4, multiclass
    clus
vv   AMP PEAK  8(10Q22.2) MUTATED AMP PEAK  8(10Q22.2) WILD-TYPE
  T1                            0                              9
  T2                            2                             27
  T3                            9                            100
  T4                            0                             14
                                vv
clus                             N0 N1 N2
  AMP PEAK  8(10Q22.2) MUTATED    5  4  2
  AMP PEAK  8(10Q22.2) WILD-TYPE 78 41 30
D8V5, multiclass
    clus
vv   AMP PEAK  8(10Q22.2) MUTATED AMP PEAK  8(10Q22.2) WILD-TYPE
  N0                            5                             78
  N1                            4                             41
  N2                            2                             30
                                vv
clus                              M0  M1 M1A  MX
  AMP PEAK  8(10Q22.2) MUTATED     8   2   0   0
  AMP PEAK  8(10Q22.2) WILD-TYPE 115  20   2  13
D8V6, multiclass
     clus
vv    AMP PEAK  8(10Q22.2) MUTATED AMP PEAK  8(10Q22.2) WILD-TYPE
  M0                             8                            115
  M1                             2                             20
  M1A                            0                              2
  MX                             0                             13
D8V7, binary
                                cls
clus                              0  1
  AMP PEAK  8(10Q22.2) MUTATED    6  5
  AMP PEAK  8(10Q22.2) WILD-TYPE 68 83
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  8(10Q22.2) MUTATED      6    5
  AMP PEAK  8(10Q22.2) WILD-TYPE   68   83
        clus
vv       AMP PEAK  8(10Q22.2) MUTATED AMP PEAK  8(10Q22.2) WILD-TYPE
  FEMALE                            6                             68
  MALE                              5                             83
D8V8, binary
                                cls
clus                               0   1
  AMP PEAK  8(10Q22.2) MUTATED     9   1
  AMP PEAK  8(10Q22.2) WILD-TYPE 134  12
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  8(10Q22.2) MUTATED      9    1
  AMP PEAK  8(10Q22.2) WILD-TYPE  134   12
                                clus
vv                               AMP PEAK  8(10Q22.2) MUTATED
  RECTAL ADENOCARCINOMA                                     9
  RECTAL MUCINOUS ADENOCARCINOMA                            1
                                clus
vv                               AMP PEAK  8(10Q22.2) WILD-TYPE
  RECTAL ADENOCARCINOMA                                     134
  RECTAL MUCINOUS ADENOCARCINOMA                             12
D8V9, binary
                                cls
clus                               0   1
  AMP PEAK  8(10Q22.2) MUTATED     1  10
  AMP PEAK  8(10Q22.2) WILD-TYPE   5 146
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  8(10Q22.2) MUTATED      1   10
  AMP PEAK  8(10Q22.2) WILD-TYPE    5  146
     clus
vv    AMP PEAK  8(10Q22.2) MUTATED AMP PEAK  8(10Q22.2) WILD-TYPE
  NO                             1                              5
  YES                           10                            146
                                vv
clus                              R0  R1  R2  RX
  AMP PEAK  8(10Q22.2) MUTATED     9   0   0   0
  AMP PEAK  8(10Q22.2) WILD-TYPE 112   2  12   3
D8V10, multiclass
    clus
vv   AMP PEAK  8(10Q22.2) MUTATED AMP PEAK  8(10Q22.2) WILD-TYPE
  R0                            9                            112
  R1                            0                              2
  R2                            0                             12
  RX                            0                              3
D8V11, continuous

Clustering(9) Variable = AMP PEAK  9(11P15.5) MUTATION ANALYSIS
D9V1, survival
                                sevent
clus2                             0  1
  AMP PEAK  9(11P15.5) MUTATED   32  3
  AMP PEAK  9(11P15.5) WILD-TYPE 85 10
  AMP PEAK  9(11P15.5) MUTATED AMP PEAK  9(11P15.5) WILD-TYPE 
                            35                             95 
  AMP PEAK  9(11P15.5) MUTATED AMP PEAK  9(11P15.5) WILD-TYPE 
                             3                             10 
$`AMP PEAK  9(11P15.5) MUTATED`
TCGA-AF-2689 TCGA-AF-2690 TCGA-AF-2692 TCGA-AF-3913 TCGA-AF-5654 TCGA-AF-6655 
       17.95        17.23        13.55        10.39         8.45        11.67 
TCGA-AF-6672 TCGA-AG-3575 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3727 TCGA-AG-3894 
       10.39        12.00         2.01         1.02         0.95         0.99 
TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-A00H TCGA-AG-A01N TCGA-AH-6897 TCGA-BM-6198 
        1.02         1.02        25.94        12.00         4.60        10.19 
TCGA-CI-6623 TCGA-CL-4957 TCGA-DC-4749 TCGA-DC-5337 TCGA-DC-5869 TCGA-DC-6154 
        9.37        13.97        11.01        15.02        12.99        12.00 
TCGA-DC-6157 TCGA-DC-6160 TCGA-DY-A0XA TCGA-EF-5830 TCGA-EF-5831 TCGA-EI-6506 
       36.00        30.05       126.41         0.49         2.40        20.55 
TCGA-EI-6514 TCGA-F5-6810 TCGA-F5-6811 TCGA-F5-6861 TCGA-G5-6233 
       16.31         0.39         1.02         1.08        18.25 

$`AMP PEAK  9(11P15.5) WILD-TYPE`
TCGA-AF-2687 TCGA-AF-2691 TCGA-AF-2693 TCGA-AF-3400 TCGA-AF-3911 TCGA-AF-4110 
       24.13        10.62        19.10        12.72        25.02        14.50 
TCGA-AF-6136 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3586 TCGA-AG-3599 TCGA-AG-3605 
       15.35         1.02         1.02         1.02         0.99         0.99 
TCGA-AG-3726 TCGA-AG-3731 TCGA-AG-3742 TCGA-AG-3878 TCGA-AG-3883 TCGA-AG-3887 
        7.96         1.02         0.99         0.99         1.02         0.92 
TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3896 TCGA-AG-3999 TCGA-AG-4008 TCGA-AG-4022 
        1.02         0.99         1.02         1.02         1.02         0.99 
TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 
       20.94        13.91         6.02        23.01        17.03        15.91 
TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01J TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y 
       13.02         1.02         1.02        12.00        70.03        63.98 
TCGA-AG-A020 TCGA-AG-A023 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N 
       10.98        51.98        49.94         1.94        38.93        61.94 
TCGA-AG-A02X TCGA-AG-A032 TCGA-AH-6544 TCGA-AH-6547 TCGA-AH-6643 TCGA-AH-6644 
       40.96        38.01         0.49         1.45         0.69         0.72 
TCGA-AH-6903 TCGA-CI-6619 TCGA-CI-6620 TCGA-CI-6622 TCGA-CI-6624 TCGA-CL-5917 
        1.81         6.02         6.02         6.94         4.70        60.00 
TCGA-CL-5918 TCGA-DC-4745 TCGA-DC-6155 TCGA-DC-6156 TCGA-DC-6158 TCGA-DC-6681 
        7.99        10.98        14.01        15.02         6.97        12.95 
TCGA-DC-6682 TCGA-DC-6683 TCGA-DT-5265 TCGA-DY-A1DC TCGA-DY-A1DD TCGA-DY-A1DE 
       13.02        10.06         5.29        41.33        57.24       129.27 
TCGA-DY-A1DF TCGA-DY-A1DG TCGA-DY-A1H8 TCGA-EI-6507 TCGA-EI-6508 TCGA-EI-6509 
       24.13        51.48        32.58        19.96        20.91        17.00 
TCGA-EI-6510 TCGA-EI-6511 TCGA-EI-6512 TCGA-EI-6513 TCGA-EI-6881 TCGA-EI-6882 
       18.28        15.85        17.69        16.34        16.37         8.61 
TCGA-EI-6883 TCGA-EI-6884 TCGA-EI-6885 TCGA-EI-6917 TCGA-EI-7002 TCGA-EI-7004 
       11.51        10.78        13.61        17.46        11.97         8.45 
TCGA-F5-6465 TCGA-F5-6571 TCGA-F5-6702 TCGA-F5-6812 TCGA-F5-6813 TCGA-F5-6814 
        3.39         0.85         2.17         0.66         0.69         0.53 
TCGA-F5-6863 TCGA-F5-6864 TCGA-G5-6235 TCGA-G5-6572 TCGA-G5-6641 
        0.76         0.46        55.76        47.08        26.43 

  AMP PEAK  9(11P15.5) MUTATED AMP PEAK  9(11P15.5) WILD-TYPE 
                          0.39                           0.46 
  AMP PEAK  9(11P15.5) MUTATED AMP PEAK  9(11P15.5) WILD-TYPE 
                        126.41                         129.27 
  AMP PEAK  9(11P15.5) MUTATED AMP PEAK  9(11P15.5) WILD-TYPE 
                         11.01                          10.98 
[1] "0.4 - 126.4 (11.0)" "0.5 - 129.3 (11.0)"
                    TCGA-AF-2687                     TCGA-AF-2689 
"AMP PEAK  9(11P15.5) WILD-TYPE"   "AMP PEAK  9(11P15.5) MUTATED" 
                    TCGA-AF-2690                     TCGA-AF-2691 
  "AMP PEAK  9(11P15.5) MUTATED" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
  "AMP PEAK  9(11P15.5) MUTATED" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
  "AMP PEAK  9(11P15.5) MUTATED" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
  "AMP PEAK  9(11P15.5) MUTATED" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
  "AMP PEAK  9(11P15.5) MUTATED"   "AMP PEAK  9(11P15.5) MUTATED" 
                    TCGA-AG-3575                     TCGA-AG-3581 
  "AMP PEAK  9(11P15.5) MUTATED" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-3582                     TCGA-AG-3583 
"AMP PEAK  9(11P15.5) WILD-TYPE"   "AMP PEAK  9(11P15.5) MUTATED" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"AMP PEAK  9(11P15.5) WILD-TYPE"   "AMP PEAK  9(11P15.5) MUTATED" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
"AMP PEAK  9(11P15.5) WILD-TYPE"   "AMP PEAK  9(11P15.5) MUTATED" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"AMP PEAK  9(11P15.5) WILD-TYPE"   "AMP PEAK  9(11P15.5) MUTATED" 
                    TCGA-AG-3896                     TCGA-AG-3999 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-4001                     TCGA-AG-4007 
  "AMP PEAK  9(11P15.5) MUTATED"   "AMP PEAK  9(11P15.5) MUTATED" 
                    TCGA-AG-4008                     TCGA-AG-4022 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
"AMP PEAK  9(11P15.5) WILD-TYPE"   "AMP PEAK  9(11P15.5) MUTATED" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
"AMP PEAK  9(11P15.5) WILD-TYPE"   "AMP PEAK  9(11P15.5) MUTATED" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AH-6544                     TCGA-AH-6547 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AH-6897                     TCGA-AH-6903 
  "AMP PEAK  9(11P15.5) MUTATED" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
  "AMP PEAK  9(11P15.5) MUTATED" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
  "AMP PEAK  9(11P15.5) MUTATED" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-CL-4957                     TCGA-CL-5917 
  "AMP PEAK  9(11P15.5) MUTATED" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-CL-5918                     TCGA-DC-4745 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-DC-4749                     TCGA-DC-5337 
  "AMP PEAK  9(11P15.5) MUTATED"   "AMP PEAK  9(11P15.5) MUTATED" 
                    TCGA-DC-5869                     TCGA-DC-6154 
  "AMP PEAK  9(11P15.5) MUTATED"   "AMP PEAK  9(11P15.5) MUTATED" 
                    TCGA-DC-6155                     TCGA-DC-6156 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-DC-6157                     TCGA-DC-6158 
  "AMP PEAK  9(11P15.5) MUTATED" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-DC-6160                     TCGA-DC-6681 
  "AMP PEAK  9(11P15.5) MUTATED" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"AMP PEAK  9(11P15.5) WILD-TYPE"   "AMP PEAK  9(11P15.5) MUTATED" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-EF-5830                     TCGA-EF-5831 
  "AMP PEAK  9(11P15.5) MUTATED"   "AMP PEAK  9(11P15.5) MUTATED" 
                    TCGA-EI-6506                     TCGA-EI-6507 
  "AMP PEAK  9(11P15.5) MUTATED" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-EI-6512                     TCGA-EI-6513 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-EI-6514                     TCGA-EI-6881 
  "AMP PEAK  9(11P15.5) MUTATED" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-EI-6884                     TCGA-EI-6885 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-EI-7004                     TCGA-F5-6465 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-F5-6571                     TCGA-F5-6702 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-F5-6810                     TCGA-F5-6811 
  "AMP PEAK  9(11P15.5) MUTATED"   "AMP PEAK  9(11P15.5) MUTATED" 
                    TCGA-F5-6812                     TCGA-F5-6813 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"AMP PEAK  9(11P15.5) WILD-TYPE"   "AMP PEAK  9(11P15.5) MUTATED" 
                    TCGA-F5-6863                     TCGA-F5-6864 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-G5-6233                     TCGA-G5-6235 
  "AMP PEAK  9(11P15.5) MUTATED" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"AMP PEAK  9(11P15.5) WILD-TYPE"   "AMP PEAK  9(11P15.5) MUTATED" 
                    TCGA-AF-2690                     TCGA-AF-2691 
  "AMP PEAK  9(11P15.5) MUTATED" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
  "AMP PEAK  9(11P15.5) MUTATED" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
  "AMP PEAK  9(11P15.5) MUTATED" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
  "AMP PEAK  9(11P15.5) MUTATED" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
  "AMP PEAK  9(11P15.5) MUTATED"   "AMP PEAK  9(11P15.5) MUTATED" 
                    TCGA-AG-3575                     TCGA-AG-3581 
  "AMP PEAK  9(11P15.5) MUTATED" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-3582                     TCGA-AG-3583 
"AMP PEAK  9(11P15.5) WILD-TYPE"   "AMP PEAK  9(11P15.5) MUTATED" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"AMP PEAK  9(11P15.5) WILD-TYPE"   "AMP PEAK  9(11P15.5) MUTATED" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
"AMP PEAK  9(11P15.5) WILD-TYPE"   "AMP PEAK  9(11P15.5) MUTATED" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"AMP PEAK  9(11P15.5) WILD-TYPE"   "AMP PEAK  9(11P15.5) MUTATED" 
                    TCGA-AG-3896                     TCGA-AG-3999 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-4001                     TCGA-AG-4007 
  "AMP PEAK  9(11P15.5) MUTATED"   "AMP PEAK  9(11P15.5) MUTATED" 
                    TCGA-AG-4008                     TCGA-AG-4022 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
"AMP PEAK  9(11P15.5) WILD-TYPE"   "AMP PEAK  9(11P15.5) MUTATED" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
"AMP PEAK  9(11P15.5) WILD-TYPE"   "AMP PEAK  9(11P15.5) MUTATED" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AH-6544                     TCGA-AH-6547 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AH-6897                     TCGA-AH-6903 
  "AMP PEAK  9(11P15.5) MUTATED" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
  "AMP PEAK  9(11P15.5) MUTATED" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
  "AMP PEAK  9(11P15.5) MUTATED" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-CL-4957                     TCGA-CL-5917 
  "AMP PEAK  9(11P15.5) MUTATED" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-CL-5918                     TCGA-DC-4745 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-DC-4749                     TCGA-DC-5337 
  "AMP PEAK  9(11P15.5) MUTATED"   "AMP PEAK  9(11P15.5) MUTATED" 
                    TCGA-DC-5869                     TCGA-DC-6154 
  "AMP PEAK  9(11P15.5) MUTATED"   "AMP PEAK  9(11P15.5) MUTATED" 
                    TCGA-DC-6155                     TCGA-DC-6156 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-DC-6157                     TCGA-DC-6158 
  "AMP PEAK  9(11P15.5) MUTATED" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-DC-6160                     TCGA-DC-6681 
  "AMP PEAK  9(11P15.5) MUTATED" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"AMP PEAK  9(11P15.5) WILD-TYPE"   "AMP PEAK  9(11P15.5) MUTATED" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-EF-5830                     TCGA-EF-5831 
  "AMP PEAK  9(11P15.5) MUTATED"   "AMP PEAK  9(11P15.5) MUTATED" 
                    TCGA-EI-6506                     TCGA-EI-6507 
  "AMP PEAK  9(11P15.5) MUTATED" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-EI-6512                     TCGA-EI-6513 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-EI-6514                     TCGA-EI-6881 
  "AMP PEAK  9(11P15.5) MUTATED" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-EI-6884                     TCGA-EI-6885 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-EI-7004                     TCGA-F5-6465 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-F5-6571                     TCGA-F5-6702 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-F5-6810                     TCGA-F5-6811 
  "AMP PEAK  9(11P15.5) MUTATED"   "AMP PEAK  9(11P15.5) MUTATED" 
                    TCGA-F5-6812                     TCGA-F5-6813 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"AMP PEAK  9(11P15.5) WILD-TYPE"   "AMP PEAK  9(11P15.5) MUTATED" 
                    TCGA-F5-6863                     TCGA-F5-6864 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-G5-6233                     TCGA-G5-6235 
  "AMP PEAK  9(11P15.5) MUTATED" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"AMP PEAK  9(11P15.5) WILD-TYPE"   "AMP PEAK  9(11P15.5) MUTATED" 
                    TCGA-AF-2690                     TCGA-AF-2691 
  "AMP PEAK  9(11P15.5) MUTATED" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
  "AMP PEAK  9(11P15.5) MUTATED" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
  "AMP PEAK  9(11P15.5) MUTATED" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
  "AMP PEAK  9(11P15.5) MUTATED" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
  "AMP PEAK  9(11P15.5) MUTATED"   "AMP PEAK  9(11P15.5) MUTATED" 
                    TCGA-AG-3575                     TCGA-AG-3581 
  "AMP PEAK  9(11P15.5) MUTATED" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-3582                     TCGA-AG-3583 
"AMP PEAK  9(11P15.5) WILD-TYPE"   "AMP PEAK  9(11P15.5) MUTATED" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"AMP PEAK  9(11P15.5) WILD-TYPE"   "AMP PEAK  9(11P15.5) MUTATED" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
"AMP PEAK  9(11P15.5) WILD-TYPE"   "AMP PEAK  9(11P15.5) MUTATED" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"AMP PEAK  9(11P15.5) WILD-TYPE"   "AMP PEAK  9(11P15.5) MUTATED" 
                    TCGA-AG-3896                     TCGA-AG-3999 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-4001                     TCGA-AG-4007 
  "AMP PEAK  9(11P15.5) MUTATED"   "AMP PEAK  9(11P15.5) MUTATED" 
                    TCGA-AG-4008                     TCGA-AG-4022 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
"AMP PEAK  9(11P15.5) WILD-TYPE"   "AMP PEAK  9(11P15.5) MUTATED" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
"AMP PEAK  9(11P15.5) WILD-TYPE"   "AMP PEAK  9(11P15.5) MUTATED" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AH-6544                     TCGA-AH-6547 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AH-6897                     TCGA-AH-6903 
  "AMP PEAK  9(11P15.5) MUTATED" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
  "AMP PEAK  9(11P15.5) MUTATED" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
  "AMP PEAK  9(11P15.5) MUTATED" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-CL-4957                     TCGA-CL-5917 
  "AMP PEAK  9(11P15.5) MUTATED" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-CL-5918                     TCGA-DC-4745 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-DC-4749                     TCGA-DC-5337 
  "AMP PEAK  9(11P15.5) MUTATED"   "AMP PEAK  9(11P15.5) MUTATED" 
                    TCGA-DC-5869                     TCGA-DC-6154 
  "AMP PEAK  9(11P15.5) MUTATED"   "AMP PEAK  9(11P15.5) MUTATED" 
                    TCGA-DC-6155                     TCGA-DC-6156 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-DC-6157                     TCGA-DC-6158 
  "AMP PEAK  9(11P15.5) MUTATED" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-DC-6160                     TCGA-DC-6681 
  "AMP PEAK  9(11P15.5) MUTATED" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"AMP PEAK  9(11P15.5) WILD-TYPE"   "AMP PEAK  9(11P15.5) MUTATED" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-EF-5830                     TCGA-EF-5831 
  "AMP PEAK  9(11P15.5) MUTATED"   "AMP PEAK  9(11P15.5) MUTATED" 
                    TCGA-EI-6506                     TCGA-EI-6507 
  "AMP PEAK  9(11P15.5) MUTATED" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-EI-6512                     TCGA-EI-6513 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-EI-6514                     TCGA-EI-6881 
  "AMP PEAK  9(11P15.5) MUTATED" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-EI-6884                     TCGA-EI-6885 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-EI-7004                     TCGA-F5-6465 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-F5-6571                     TCGA-F5-6702 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-F5-6810                     TCGA-F5-6811 
  "AMP PEAK  9(11P15.5) MUTATED"   "AMP PEAK  9(11P15.5) MUTATED" 
                    TCGA-F5-6812                     TCGA-F5-6813 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"AMP PEAK  9(11P15.5) WILD-TYPE"   "AMP PEAK  9(11P15.5) MUTATED" 
                    TCGA-F5-6863                     TCGA-F5-6864 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-G5-6233                     TCGA-G5-6235 
  "AMP PEAK  9(11P15.5) MUTATED" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
[1] "hr=" "1.6"
D9V2, continuous
                                vv
clus                             STAGE I STAGE II STAGE IIA STAGE IIB STAGE IIC
  AMP PEAK  9(11P15.5) MUTATED         9        2        14         1         1
  AMP PEAK  9(11P15.5) WILD-TYPE      21        6        24         1         1
                                vv
clus                             STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  AMP PEAK  9(11P15.5) MUTATED           2          3          3          2
  AMP PEAK  9(11P15.5) WILD-TYPE         3          6         20         12
                                vv
clus                             STAGE IV STAGE IVA
  AMP PEAK  9(11P15.5) MUTATED          5         1
  AMP PEAK  9(11P15.5) WILD-TYPE       12         8
D9V3, multiclass
                                vv
clus                             T1 T2 T3 T4
  AMP PEAK  9(11P15.5) MUTATED    3  8 29  4
  AMP PEAK  9(11P15.5) WILD-TYPE  6 21 80 10
D9V4, multiclass
    clus
vv   AMP PEAK  9(11P15.5) MUTATED AMP PEAK  9(11P15.5) WILD-TYPE
  T1                            3                              6
  T2                            8                             21
  T3                           29                             80
  T4                            4                             10
                                vv
clus                             N0 N1 N2
  AMP PEAK  9(11P15.5) MUTATED   28  8  8
  AMP PEAK  9(11P15.5) WILD-TYPE 55 37 24
D9V5, multiclass
    clus
vv   AMP PEAK  9(11P15.5) MUTATED AMP PEAK  9(11P15.5) WILD-TYPE
  N0                           28                             55
  N1                            8                             37
  N2                            8                             24
                                vv
clus                             M0 M1 M1A MX
  AMP PEAK  9(11P15.5) MUTATED   35  6   0  2
  AMP PEAK  9(11P15.5) WILD-TYPE 88 16   2 11
D9V6, multiclass
     clus
vv    AMP PEAK  9(11P15.5) MUTATED AMP PEAK  9(11P15.5) WILD-TYPE
  M0                            35                             88
  M1                             6                             16
  M1A                            0                              2
  MX                             2                             11
D9V7, binary
                                cls
clus                              0  1
  AMP PEAK  9(11P15.5) MUTATED   20 24
  AMP PEAK  9(11P15.5) WILD-TYPE 54 64
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  9(11P15.5) MUTATED     20   24
  AMP PEAK  9(11P15.5) WILD-TYPE   54   64
        clus
vv       AMP PEAK  9(11P15.5) MUTATED AMP PEAK  9(11P15.5) WILD-TYPE
  FEMALE                           20                             54
  MALE                             24                             64
D9V8, binary
                                cls
clus                               0   1
  AMP PEAK  9(11P15.5) MUTATED    42   1
  AMP PEAK  9(11P15.5) WILD-TYPE 101  12
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  9(11P15.5) MUTATED     42    1
  AMP PEAK  9(11P15.5) WILD-TYPE  101   12
                                clus
vv                               AMP PEAK  9(11P15.5) MUTATED
  RECTAL ADENOCARCINOMA                                    42
  RECTAL MUCINOUS ADENOCARCINOMA                            1
                                clus
vv                               AMP PEAK  9(11P15.5) WILD-TYPE
  RECTAL ADENOCARCINOMA                                     101
  RECTAL MUCINOUS ADENOCARCINOMA                             12
D9V9, binary
                                cls
clus                               0   1
  AMP PEAK  9(11P15.5) MUTATED     2  42
  AMP PEAK  9(11P15.5) WILD-TYPE   4 114
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  9(11P15.5) MUTATED      2   42
  AMP PEAK  9(11P15.5) WILD-TYPE    4  114
     clus
vv    AMP PEAK  9(11P15.5) MUTATED AMP PEAK  9(11P15.5) WILD-TYPE
  NO                             2                              4
  YES                           42                            114
                                vv
clus                             R0 R1 R2 RX
  AMP PEAK  9(11P15.5) MUTATED   35  0  3  0
  AMP PEAK  9(11P15.5) WILD-TYPE 86  2  9  3
D9V10, multiclass
    clus
vv   AMP PEAK  9(11P15.5) MUTATED AMP PEAK  9(11P15.5) WILD-TYPE
  R0                           35                             86
  R1                            0                              2
  R2                            3                              9
  RX                            0                              3
D9V11, continuous

Clustering(10) Variable = AMP PEAK 10(11Q13.3) MUTATION ANALYSIS
D10V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 10(11Q13.3) MUTATED   21  3
  AMP PEAK 10(11Q13.3) WILD-TYPE 96 10
  AMP PEAK 10(11Q13.3) MUTATED AMP PEAK 10(11Q13.3) WILD-TYPE 
                            24                            106 
  AMP PEAK 10(11Q13.3) MUTATED AMP PEAK 10(11Q13.3) WILD-TYPE 
                             3                             10 
$`AMP PEAK 10(11Q13.3) MUTATED`
TCGA-AF-2690 TCGA-AF-3913 TCGA-AG-3575 TCGA-AG-3883 TCGA-AG-4001 TCGA-AG-4007 
       17.23        10.39        12.00         1.02         1.02         1.02 
TCGA-AG-A00H TCGA-AG-A01N TCGA-AG-A01Y TCGA-AH-6897 TCGA-CI-6623 TCGA-CI-6624 
       25.94        12.00        63.98         4.60         9.37         4.70 
TCGA-DC-4749 TCGA-DC-5869 TCGA-DC-6154 TCGA-DC-6156 TCGA-DC-6157 TCGA-DC-6158 
       11.01        12.99        12.00        15.02        36.00         6.97 
TCGA-DT-5265 TCGA-DY-A1DE TCGA-EI-6514 TCGA-EI-6885 TCGA-F5-6810 TCGA-F5-6811 
        5.29       129.27        16.31        13.61         0.39         1.02 

$`AMP PEAK 10(11Q13.3) WILD-TYPE`
TCGA-AF-2687 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-2693 TCGA-AF-3400 
       24.13        17.95        10.62        13.55        19.10        12.72 
TCGA-AF-3911 TCGA-AF-4110 TCGA-AF-5654 TCGA-AF-6136 TCGA-AF-6655 TCGA-AF-6672 
       25.02        14.50         8.45        15.35        11.67        10.39 
TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3586 TCGA-AG-3587 TCGA-AG-3599 
        1.02         1.02         2.01         1.02         1.02         0.99 
TCGA-AG-3605 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3731 TCGA-AG-3742 TCGA-AG-3878 
        0.99         7.96         0.95         1.02         0.99         0.99 
TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3896 TCGA-AG-3999 
        0.92         1.02         0.99         0.99         1.02         1.02 
TCGA-AG-4008 TCGA-AG-4022 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00Y 
        1.02         0.99        20.94        13.91         6.02        23.01 
TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01J TCGA-AG-A01L 
       17.03        15.91        13.02         1.02         1.02        12.00 
TCGA-AG-A01W TCGA-AG-A020 TCGA-AG-A023 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G 
       70.03        10.98        51.98        49.94         1.94        38.93 
TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AH-6544 TCGA-AH-6547 TCGA-AH-6643 
       61.94        40.96        38.01         0.49         1.45         0.69 
TCGA-AH-6644 TCGA-AH-6903 TCGA-BM-6198 TCGA-CI-6619 TCGA-CI-6620 TCGA-CI-6622 
        0.72         1.81        10.19         6.02         6.02         6.94 
TCGA-CL-4957 TCGA-CL-5917 TCGA-CL-5918 TCGA-DC-4745 TCGA-DC-5337 TCGA-DC-6155 
       13.97        60.00         7.99        10.98        15.02        14.01 
TCGA-DC-6160 TCGA-DC-6681 TCGA-DC-6682 TCGA-DC-6683 TCGA-DY-A0XA TCGA-DY-A1DC 
       30.05        12.95        13.02        10.06       126.41        41.33 
TCGA-DY-A1DD TCGA-DY-A1DF TCGA-DY-A1DG TCGA-DY-A1H8 TCGA-EF-5830 TCGA-EF-5831 
       57.24        24.13        51.48        32.58         0.49         2.40 
TCGA-EI-6506 TCGA-EI-6507 TCGA-EI-6508 TCGA-EI-6509 TCGA-EI-6510 TCGA-EI-6511 
       20.55        19.96        20.91        17.00        18.28        15.85 
TCGA-EI-6512 TCGA-EI-6513 TCGA-EI-6881 TCGA-EI-6882 TCGA-EI-6883 TCGA-EI-6884 
       17.69        16.34        16.37         8.61        11.51        10.78 
TCGA-EI-6917 TCGA-EI-7002 TCGA-EI-7004 TCGA-F5-6465 TCGA-F5-6571 TCGA-F5-6702 
       17.46        11.97         8.45         3.39         0.85         2.17 
TCGA-F5-6812 TCGA-F5-6813 TCGA-F5-6814 TCGA-F5-6861 TCGA-F5-6863 TCGA-F5-6864 
        0.66         0.69         0.53         1.08         0.76         0.46 
TCGA-G5-6233 TCGA-G5-6235 TCGA-G5-6572 TCGA-G5-6641 
       18.25        55.76        47.08        26.43 

  AMP PEAK 10(11Q13.3) MUTATED AMP PEAK 10(11Q13.3) WILD-TYPE 
                          0.39                           0.46 
  AMP PEAK 10(11Q13.3) MUTATED AMP PEAK 10(11Q13.3) WILD-TYPE 
                        129.27                         126.41 
  AMP PEAK 10(11Q13.3) MUTATED AMP PEAK 10(11Q13.3) WILD-TYPE 
                        11.505                         10.980 
[1] "0.4 - 129.3 (11.5)" "0.5 - 126.4 (11.0)"
                    TCGA-AF-2687                     TCGA-AF-2689 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
  "AMP PEAK 10(11Q13.3) MUTATED" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
  "AMP PEAK 10(11Q13.3) MUTATED" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-3575                     TCGA-AG-3581 
  "AMP PEAK 10(11Q13.3) MUTATED" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-3582                     TCGA-AG-3583 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"AMP PEAK 10(11Q13.3) WILD-TYPE"   "AMP PEAK 10(11Q13.3) MUTATED" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-4001                     TCGA-AG-4007 
  "AMP PEAK 10(11Q13.3) MUTATED"   "AMP PEAK 10(11Q13.3) MUTATED" 
                    TCGA-AG-4008                     TCGA-AG-4022 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
"AMP PEAK 10(11Q13.3) WILD-TYPE"   "AMP PEAK 10(11Q13.3) MUTATED" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
"AMP PEAK 10(11Q13.3) WILD-TYPE"   "AMP PEAK 10(11Q13.3) MUTATED" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
"AMP PEAK 10(11Q13.3) WILD-TYPE"   "AMP PEAK 10(11Q13.3) MUTATED" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AH-6544                     TCGA-AH-6547 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AH-6897                     TCGA-AH-6903 
  "AMP PEAK 10(11Q13.3) MUTATED" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
  "AMP PEAK 10(11Q13.3) MUTATED"   "AMP PEAK 10(11Q13.3) MUTATED" 
                    TCGA-CL-4957                     TCGA-CL-5917 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-CL-5918                     TCGA-DC-4745 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-DC-4749                     TCGA-DC-5337 
  "AMP PEAK 10(11Q13.3) MUTATED" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
  "AMP PEAK 10(11Q13.3) MUTATED"   "AMP PEAK 10(11Q13.3) MUTATED" 
                    TCGA-DC-6155                     TCGA-DC-6156 
"AMP PEAK 10(11Q13.3) WILD-TYPE"   "AMP PEAK 10(11Q13.3) MUTATED" 
                    TCGA-DC-6157                     TCGA-DC-6158 
  "AMP PEAK 10(11Q13.3) MUTATED"   "AMP PEAK 10(11Q13.3) MUTATED" 
                    TCGA-DC-6160                     TCGA-DC-6681 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
  "AMP PEAK 10(11Q13.3) MUTATED" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
  "AMP PEAK 10(11Q13.3) MUTATED" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-EF-5830                     TCGA-EF-5831 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-EI-6506                     TCGA-EI-6507 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-EI-6512                     TCGA-EI-6513 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-EI-6514                     TCGA-EI-6881 
  "AMP PEAK 10(11Q13.3) MUTATED" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-EI-6884                     TCGA-EI-6885 
"AMP PEAK 10(11Q13.3) WILD-TYPE"   "AMP PEAK 10(11Q13.3) MUTATED" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-EI-7004                     TCGA-F5-6465 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-F5-6571                     TCGA-F5-6702 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-F5-6810                     TCGA-F5-6811 
  "AMP PEAK 10(11Q13.3) MUTATED"   "AMP PEAK 10(11Q13.3) MUTATED" 
                    TCGA-F5-6812                     TCGA-F5-6813 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-G5-6233                     TCGA-G5-6235 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
  "AMP PEAK 10(11Q13.3) MUTATED" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
  "AMP PEAK 10(11Q13.3) MUTATED" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-3575                     TCGA-AG-3581 
  "AMP PEAK 10(11Q13.3) MUTATED" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-3582                     TCGA-AG-3583 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"AMP PEAK 10(11Q13.3) WILD-TYPE"   "AMP PEAK 10(11Q13.3) MUTATED" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-4001                     TCGA-AG-4007 
  "AMP PEAK 10(11Q13.3) MUTATED"   "AMP PEAK 10(11Q13.3) MUTATED" 
                    TCGA-AG-4008                     TCGA-AG-4022 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
"AMP PEAK 10(11Q13.3) WILD-TYPE"   "AMP PEAK 10(11Q13.3) MUTATED" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
"AMP PEAK 10(11Q13.3) WILD-TYPE"   "AMP PEAK 10(11Q13.3) MUTATED" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
"AMP PEAK 10(11Q13.3) WILD-TYPE"   "AMP PEAK 10(11Q13.3) MUTATED" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AH-6544                     TCGA-AH-6547 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AH-6897                     TCGA-AH-6903 
  "AMP PEAK 10(11Q13.3) MUTATED" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
  "AMP PEAK 10(11Q13.3) MUTATED"   "AMP PEAK 10(11Q13.3) MUTATED" 
                    TCGA-CL-4957                     TCGA-CL-5917 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-CL-5918                     TCGA-DC-4745 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-DC-4749                     TCGA-DC-5337 
  "AMP PEAK 10(11Q13.3) MUTATED" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
  "AMP PEAK 10(11Q13.3) MUTATED"   "AMP PEAK 10(11Q13.3) MUTATED" 
                    TCGA-DC-6155                     TCGA-DC-6156 
"AMP PEAK 10(11Q13.3) WILD-TYPE"   "AMP PEAK 10(11Q13.3) MUTATED" 
                    TCGA-DC-6157                     TCGA-DC-6158 
  "AMP PEAK 10(11Q13.3) MUTATED"   "AMP PEAK 10(11Q13.3) MUTATED" 
                    TCGA-DC-6160                     TCGA-DC-6681 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
  "AMP PEAK 10(11Q13.3) MUTATED" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
  "AMP PEAK 10(11Q13.3) MUTATED" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-EF-5830                     TCGA-EF-5831 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-EI-6506                     TCGA-EI-6507 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-EI-6512                     TCGA-EI-6513 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-EI-6514                     TCGA-EI-6881 
  "AMP PEAK 10(11Q13.3) MUTATED" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-EI-6884                     TCGA-EI-6885 
"AMP PEAK 10(11Q13.3) WILD-TYPE"   "AMP PEAK 10(11Q13.3) MUTATED" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-EI-7004                     TCGA-F5-6465 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-F5-6571                     TCGA-F5-6702 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-F5-6810                     TCGA-F5-6811 
  "AMP PEAK 10(11Q13.3) MUTATED"   "AMP PEAK 10(11Q13.3) MUTATED" 
                    TCGA-F5-6812                     TCGA-F5-6813 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-G5-6233                     TCGA-G5-6235 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
  "AMP PEAK 10(11Q13.3) MUTATED" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
  "AMP PEAK 10(11Q13.3) MUTATED" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-3575                     TCGA-AG-3581 
  "AMP PEAK 10(11Q13.3) MUTATED" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-3582                     TCGA-AG-3583 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"AMP PEAK 10(11Q13.3) WILD-TYPE"   "AMP PEAK 10(11Q13.3) MUTATED" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-4001                     TCGA-AG-4007 
  "AMP PEAK 10(11Q13.3) MUTATED"   "AMP PEAK 10(11Q13.3) MUTATED" 
                    TCGA-AG-4008                     TCGA-AG-4022 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
"AMP PEAK 10(11Q13.3) WILD-TYPE"   "AMP PEAK 10(11Q13.3) MUTATED" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
"AMP PEAK 10(11Q13.3) WILD-TYPE"   "AMP PEAK 10(11Q13.3) MUTATED" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
"AMP PEAK 10(11Q13.3) WILD-TYPE"   "AMP PEAK 10(11Q13.3) MUTATED" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AH-6544                     TCGA-AH-6547 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AH-6897                     TCGA-AH-6903 
  "AMP PEAK 10(11Q13.3) MUTATED" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
  "AMP PEAK 10(11Q13.3) MUTATED"   "AMP PEAK 10(11Q13.3) MUTATED" 
                    TCGA-CL-4957                     TCGA-CL-5917 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-CL-5918                     TCGA-DC-4745 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-DC-4749                     TCGA-DC-5337 
  "AMP PEAK 10(11Q13.3) MUTATED" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
  "AMP PEAK 10(11Q13.3) MUTATED"   "AMP PEAK 10(11Q13.3) MUTATED" 
                    TCGA-DC-6155                     TCGA-DC-6156 
"AMP PEAK 10(11Q13.3) WILD-TYPE"   "AMP PEAK 10(11Q13.3) MUTATED" 
                    TCGA-DC-6157                     TCGA-DC-6158 
  "AMP PEAK 10(11Q13.3) MUTATED"   "AMP PEAK 10(11Q13.3) MUTATED" 
                    TCGA-DC-6160                     TCGA-DC-6681 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
  "AMP PEAK 10(11Q13.3) MUTATED" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
  "AMP PEAK 10(11Q13.3) MUTATED" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-EF-5830                     TCGA-EF-5831 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-EI-6506                     TCGA-EI-6507 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-EI-6512                     TCGA-EI-6513 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-EI-6514                     TCGA-EI-6881 
  "AMP PEAK 10(11Q13.3) MUTATED" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-EI-6884                     TCGA-EI-6885 
"AMP PEAK 10(11Q13.3) WILD-TYPE"   "AMP PEAK 10(11Q13.3) MUTATED" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-EI-7004                     TCGA-F5-6465 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-F5-6571                     TCGA-F5-6702 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-F5-6810                     TCGA-F5-6811 
  "AMP PEAK 10(11Q13.3) MUTATED"   "AMP PEAK 10(11Q13.3) MUTATED" 
                    TCGA-F5-6812                     TCGA-F5-6813 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-G5-6233                     TCGA-G5-6235 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
[1] "hr=" "1.4"
D10V2, continuous
                                vv
clus                             STAGE I STAGE II STAGE IIA STAGE IIB STAGE IIC
  AMP PEAK 10(11Q13.3) MUTATED         7        3         7         0         0
  AMP PEAK 10(11Q13.3) WILD-TYPE      23        5        31         2         2
                                vv
clus                             STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  AMP PEAK 10(11Q13.3) MUTATED           1          0          2          1
  AMP PEAK 10(11Q13.3) WILD-TYPE         4          9         21         13
                                vv
clus                             STAGE IV STAGE IVA
  AMP PEAK 10(11Q13.3) MUTATED          3         2
  AMP PEAK 10(11Q13.3) WILD-TYPE       14         7
D10V3, multiclass
                                vv
clus                             T1 T2 T3 T4
  AMP PEAK 10(11Q13.3) MUTATED    1  7 16  3
  AMP PEAK 10(11Q13.3) WILD-TYPE  8 22 93 11
D10V4, multiclass
    clus
vv   AMP PEAK 10(11Q13.3) MUTATED AMP PEAK 10(11Q13.3) WILD-TYPE
  T1                            1                              8
  T2                            7                             22
  T3                           16                             93
  T4                            3                             11
                                vv
clus                             N0 N1 N2
  AMP PEAK 10(11Q13.3) MUTATED   18  5  4
  AMP PEAK 10(11Q13.3) WILD-TYPE 65 40 28
D10V5, multiclass
    clus
vv   AMP PEAK 10(11Q13.3) MUTATED AMP PEAK 10(11Q13.3) WILD-TYPE
  N0                           18                             65
  N1                            5                             40
  N2                            4                             28
                                vv
clus                              M0  M1 M1A  MX
  AMP PEAK 10(11Q13.3) MUTATED    20   5   1   1
  AMP PEAK 10(11Q13.3) WILD-TYPE 103  17   1  12
D10V6, multiclass
     clus
vv    AMP PEAK 10(11Q13.3) MUTATED AMP PEAK 10(11Q13.3) WILD-TYPE
  M0                            20                            103
  M1                             5                             17
  M1A                            1                              1
  MX                             1                             12
D10V7, binary
                                cls
clus                              0  1
  AMP PEAK 10(11Q13.3) MUTATED   12 15
  AMP PEAK 10(11Q13.3) WILD-TYPE 62 73
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 10(11Q13.3) MUTATED     12   15
  AMP PEAK 10(11Q13.3) WILD-TYPE   62   73
        clus
vv       AMP PEAK 10(11Q13.3) MUTATED AMP PEAK 10(11Q13.3) WILD-TYPE
  FEMALE                           12                             62
  MALE                             15                             73
D10V8, binary
                                cls
clus                               0   1
  AMP PEAK 10(11Q13.3) MUTATED    26   1
  AMP PEAK 10(11Q13.3) WILD-TYPE 117  12
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 10(11Q13.3) MUTATED     26    1
  AMP PEAK 10(11Q13.3) WILD-TYPE  117   12
                                clus
vv                               AMP PEAK 10(11Q13.3) MUTATED
  RECTAL ADENOCARCINOMA                                    26
  RECTAL MUCINOUS ADENOCARCINOMA                            1
                                clus
vv                               AMP PEAK 10(11Q13.3) WILD-TYPE
  RECTAL ADENOCARCINOMA                                     117
  RECTAL MUCINOUS ADENOCARCINOMA                             12
D10V9, binary
                                cls
clus                               0   1
  AMP PEAK 10(11Q13.3) MUTATED     0  27
  AMP PEAK 10(11Q13.3) WILD-TYPE   6 129
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 10(11Q13.3) MUTATED      0   27
  AMP PEAK 10(11Q13.3) WILD-TYPE    6  129
     clus
vv    AMP PEAK 10(11Q13.3) MUTATED AMP PEAK 10(11Q13.3) WILD-TYPE
  NO                             0                              6
  YES                           27                            129
                                vv
clus                              R0  R1  R2  RX
  AMP PEAK 10(11Q13.3) MUTATED    19   0   2   1
  AMP PEAK 10(11Q13.3) WILD-TYPE 102   2  10   2
D10V10, multiclass
    clus
vv   AMP PEAK 10(11Q13.3) MUTATED AMP PEAK 10(11Q13.3) WILD-TYPE
  R0                           19                            102
  R1                            0                              2
  R2                            2                             10
  RX                            1                              2
D10V11, continuous

Clustering(11) Variable = AMP PEAK 11(12P13.33) MUTATION ANALYSIS
D11V1, survival
                                 sevent
clus2                              0  1
  AMP PEAK 11(12P13.33) MUTATED   30  4
  AMP PEAK 11(12P13.33) WILD-TYPE 87  9
  AMP PEAK 11(12P13.33) MUTATED AMP PEAK 11(12P13.33) WILD-TYPE 
                             34                              96 
  AMP PEAK 11(12P13.33) MUTATED AMP PEAK 11(12P13.33) WILD-TYPE 
                              4                               9 
$`AMP PEAK 11(12P13.33) MUTATED`
TCGA-AF-2693 TCGA-AF-3400 TCGA-AF-3911 TCGA-AF-4110 TCGA-AF-5654 TCGA-AF-6672 
       19.10        12.72        25.02        14.50         8.45        10.39 
TCGA-AG-3587 TCGA-AG-3726 TCGA-AG-3731 TCGA-AG-3883 TCGA-AG-3887 TCGA-AG-3896 
        1.02         7.96         1.02         1.02         0.92         1.02 
TCGA-AG-4001 TCGA-AG-4022 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A02G TCGA-AG-A02N 
        1.02         0.99        15.91        13.02        38.93        61.94 
TCGA-CI-6624 TCGA-CL-5917 TCGA-DC-6682 TCGA-DC-6683 TCGA-DT-5265 TCGA-DY-A0XA 
        4.70        60.00        13.02        10.06         5.29       126.41 
TCGA-DY-A1DD TCGA-DY-A1H8 TCGA-EI-6507 TCGA-EI-6510 TCGA-EI-6512 TCGA-EI-6885 
       57.24        32.58        19.96        18.28        17.69        13.61 
TCGA-EI-7002 TCGA-F5-6812 TCGA-G5-6233 TCGA-G5-6641 
       11.97         0.66        18.25        26.43 

$`AMP PEAK 11(12P13.33) WILD-TYPE`
TCGA-AF-2687 TCGA-AF-2689 TCGA-AF-2690 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3913 
       24.13        17.95        17.23        10.62        13.55        10.39 
TCGA-AF-6136 TCGA-AF-6655 TCGA-AG-3575 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 
       15.35        11.67        12.00         1.02         1.02         2.01 
TCGA-AG-3586 TCGA-AG-3599 TCGA-AG-3605 TCGA-AG-3727 TCGA-AG-3742 TCGA-AG-3878 
        1.02         0.99         0.99         0.95         0.99         0.99 
TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4007 TCGA-AG-4008 
        1.02         0.99         0.99         1.02         1.02         1.02 
TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 
       20.94        13.91         6.02        25.94        23.01        17.03 
TCGA-AG-A016 TCGA-AG-A01J TCGA-AG-A01L TCGA-AG-A01N TCGA-AG-A01W TCGA-AG-A01Y 
        1.02         1.02        12.00        12.00        70.03        63.98 
TCGA-AG-A020 TCGA-AG-A023 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02X TCGA-AG-A032 
       10.98        51.98        49.94         1.94        40.96        38.01 
TCGA-AH-6544 TCGA-AH-6547 TCGA-AH-6643 TCGA-AH-6644 TCGA-AH-6897 TCGA-AH-6903 
        0.49         1.45         0.69         0.72         4.60         1.81 
TCGA-BM-6198 TCGA-CI-6619 TCGA-CI-6620 TCGA-CI-6622 TCGA-CI-6623 TCGA-CL-4957 
       10.19         6.02         6.02         6.94         9.37        13.97 
TCGA-CL-5918 TCGA-DC-4745 TCGA-DC-4749 TCGA-DC-5337 TCGA-DC-5869 TCGA-DC-6154 
        7.99        10.98        11.01        15.02        12.99        12.00 
TCGA-DC-6155 TCGA-DC-6156 TCGA-DC-6157 TCGA-DC-6158 TCGA-DC-6160 TCGA-DC-6681 
       14.01        15.02        36.00         6.97        30.05        12.95 
TCGA-DY-A1DC TCGA-DY-A1DE TCGA-DY-A1DF TCGA-DY-A1DG TCGA-EF-5830 TCGA-EF-5831 
       41.33       129.27        24.13        51.48         0.49         2.40 
TCGA-EI-6506 TCGA-EI-6508 TCGA-EI-6509 TCGA-EI-6511 TCGA-EI-6513 TCGA-EI-6514 
       20.55        20.91        17.00        15.85        16.34        16.31 
TCGA-EI-6881 TCGA-EI-6882 TCGA-EI-6883 TCGA-EI-6884 TCGA-EI-6917 TCGA-EI-7004 
       16.37         8.61        11.51        10.78        17.46         8.45 
TCGA-F5-6465 TCGA-F5-6571 TCGA-F5-6702 TCGA-F5-6810 TCGA-F5-6811 TCGA-F5-6813 
        3.39         0.85         2.17         0.39         1.02         0.69 
TCGA-F5-6814 TCGA-F5-6861 TCGA-F5-6863 TCGA-F5-6864 TCGA-G5-6235 TCGA-G5-6572 
        0.53         1.08         0.76         0.46        55.76        47.08 

  AMP PEAK 11(12P13.33) MUTATED AMP PEAK 11(12P13.33) WILD-TYPE 
                           0.66                            0.39 
  AMP PEAK 11(12P13.33) MUTATED AMP PEAK 11(12P13.33) WILD-TYPE 
                         126.41                          129.27 
  AMP PEAK 11(12P13.33) MUTATED AMP PEAK 11(12P13.33) WILD-TYPE 
                          13.02                           10.70 
[1] "0.7 - 126.4 (13.0)" "0.4 - 129.3 (10.7)"
                     TCGA-AF-2687                      TCGA-AF-2689 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AF-2690                      TCGA-AF-2691 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AF-2692                      TCGA-AF-2693 
"AMP PEAK 11(12P13.33) WILD-TYPE"   "AMP PEAK 11(12P13.33) MUTATED" 
                     TCGA-AF-3400                      TCGA-AF-3911 
  "AMP PEAK 11(12P13.33) MUTATED"   "AMP PEAK 11(12P13.33) MUTATED" 
                     TCGA-AF-3913                      TCGA-AF-4110 
"AMP PEAK 11(12P13.33) WILD-TYPE"   "AMP PEAK 11(12P13.33) MUTATED" 
                     TCGA-AF-5654                      TCGA-AF-6136 
  "AMP PEAK 11(12P13.33) MUTATED" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AF-6655                      TCGA-AF-6672 
"AMP PEAK 11(12P13.33) WILD-TYPE"   "AMP PEAK 11(12P13.33) MUTATED" 
                     TCGA-AG-3575                      TCGA-AG-3581 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-3582                      TCGA-AG-3583 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-3586                      TCGA-AG-3587 
"AMP PEAK 11(12P13.33) WILD-TYPE"   "AMP PEAK 11(12P13.33) MUTATED" 
                     TCGA-AG-3599                      TCGA-AG-3605 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-3726                      TCGA-AG-3727 
  "AMP PEAK 11(12P13.33) MUTATED" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-3731                      TCGA-AG-3742 
  "AMP PEAK 11(12P13.33) MUTATED" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-3878                      TCGA-AG-3883 
"AMP PEAK 11(12P13.33) WILD-TYPE"   "AMP PEAK 11(12P13.33) MUTATED" 
                     TCGA-AG-3887                      TCGA-AG-3892 
  "AMP PEAK 11(12P13.33) MUTATED" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-3893                      TCGA-AG-3894 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-3896                      TCGA-AG-3999 
  "AMP PEAK 11(12P13.33) MUTATED" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-4001                      TCGA-AG-4007 
  "AMP PEAK 11(12P13.33) MUTATED" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-4008                      TCGA-AG-4022 
"AMP PEAK 11(12P13.33) WILD-TYPE"   "AMP PEAK 11(12P13.33) MUTATED" 
                     TCGA-AG-A002                      TCGA-AG-A008 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-A00C                      TCGA-AG-A00H 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-A00Y                      TCGA-AG-A011 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-A014                      TCGA-AG-A015 
  "AMP PEAK 11(12P13.33) MUTATED"   "AMP PEAK 11(12P13.33) MUTATED" 
                     TCGA-AG-A016                      TCGA-AG-A01J 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-A01L                      TCGA-AG-A01N 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-A01W                      TCGA-AG-A01Y 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-A020                      TCGA-AG-A023 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-A025                      TCGA-AG-A026 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-A02G                      TCGA-AG-A02N 
  "AMP PEAK 11(12P13.33) MUTATED"   "AMP PEAK 11(12P13.33) MUTATED" 
                     TCGA-AG-A02X                      TCGA-AG-A032 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AH-6544                      TCGA-AH-6547 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AH-6643                      TCGA-AH-6644 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AH-6897                      TCGA-AH-6903 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-BM-6198                      TCGA-CI-6619 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-CI-6620                      TCGA-CI-6622 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-CI-6623                      TCGA-CI-6624 
"AMP PEAK 11(12P13.33) WILD-TYPE"   "AMP PEAK 11(12P13.33) MUTATED" 
                     TCGA-CL-4957                      TCGA-CL-5917 
"AMP PEAK 11(12P13.33) WILD-TYPE"   "AMP PEAK 11(12P13.33) MUTATED" 
                     TCGA-CL-5918                      TCGA-DC-4745 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-DC-4749                      TCGA-DC-5337 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-DC-5869                      TCGA-DC-6154 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-DC-6155                      TCGA-DC-6156 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-DC-6157                      TCGA-DC-6158 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-DC-6160                      TCGA-DC-6681 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-DC-6682                      TCGA-DC-6683 
  "AMP PEAK 11(12P13.33) MUTATED"   "AMP PEAK 11(12P13.33) MUTATED" 
                     TCGA-DT-5265                      TCGA-DY-A0XA 
  "AMP PEAK 11(12P13.33) MUTATED"   "AMP PEAK 11(12P13.33) MUTATED" 
                     TCGA-DY-A1DC                      TCGA-DY-A1DD 
"AMP PEAK 11(12P13.33) WILD-TYPE"   "AMP PEAK 11(12P13.33) MUTATED" 
                     TCGA-DY-A1DE                      TCGA-DY-A1DF 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-DY-A1DG                      TCGA-DY-A1H8 
"AMP PEAK 11(12P13.33) WILD-TYPE"   "AMP PEAK 11(12P13.33) MUTATED" 
                     TCGA-EF-5830                      TCGA-EF-5831 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-EI-6506                      TCGA-EI-6507 
"AMP PEAK 11(12P13.33) WILD-TYPE"   "AMP PEAK 11(12P13.33) MUTATED" 
                     TCGA-EI-6508                      TCGA-EI-6509 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-EI-6510                      TCGA-EI-6511 
  "AMP PEAK 11(12P13.33) MUTATED" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-EI-6512                      TCGA-EI-6513 
  "AMP PEAK 11(12P13.33) MUTATED" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-EI-6514                      TCGA-EI-6881 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-EI-6882                      TCGA-EI-6883 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-EI-6884                      TCGA-EI-6885 
"AMP PEAK 11(12P13.33) WILD-TYPE"   "AMP PEAK 11(12P13.33) MUTATED" 
                     TCGA-EI-6917                      TCGA-EI-7002 
"AMP PEAK 11(12P13.33) WILD-TYPE"   "AMP PEAK 11(12P13.33) MUTATED" 
                     TCGA-EI-7004                      TCGA-F5-6465 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-F5-6571                      TCGA-F5-6702 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-F5-6810                      TCGA-F5-6811 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-F5-6812                      TCGA-F5-6813 
  "AMP PEAK 11(12P13.33) MUTATED" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-F5-6814                      TCGA-F5-6861 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-F5-6863                      TCGA-F5-6864 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-G5-6233                      TCGA-G5-6235 
  "AMP PEAK 11(12P13.33) MUTATED" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-G5-6572                      TCGA-G5-6641 
"AMP PEAK 11(12P13.33) WILD-TYPE"   "AMP PEAK 11(12P13.33) MUTATED" 
                     TCGA-AF-2687                      TCGA-AF-2689 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AF-2690                      TCGA-AF-2691 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AF-2692                      TCGA-AF-2693 
"AMP PEAK 11(12P13.33) WILD-TYPE"   "AMP PEAK 11(12P13.33) MUTATED" 
                     TCGA-AF-3400                      TCGA-AF-3911 
  "AMP PEAK 11(12P13.33) MUTATED"   "AMP PEAK 11(12P13.33) MUTATED" 
                     TCGA-AF-3913                      TCGA-AF-4110 
"AMP PEAK 11(12P13.33) WILD-TYPE"   "AMP PEAK 11(12P13.33) MUTATED" 
                     TCGA-AF-5654                      TCGA-AF-6136 
  "AMP PEAK 11(12P13.33) MUTATED" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AF-6655                      TCGA-AF-6672 
"AMP PEAK 11(12P13.33) WILD-TYPE"   "AMP PEAK 11(12P13.33) MUTATED" 
                     TCGA-AG-3575                      TCGA-AG-3581 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-3582                      TCGA-AG-3583 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-3586                      TCGA-AG-3587 
"AMP PEAK 11(12P13.33) WILD-TYPE"   "AMP PEAK 11(12P13.33) MUTATED" 
                     TCGA-AG-3599                      TCGA-AG-3605 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-3726                      TCGA-AG-3727 
  "AMP PEAK 11(12P13.33) MUTATED" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-3731                      TCGA-AG-3742 
  "AMP PEAK 11(12P13.33) MUTATED" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-3878                      TCGA-AG-3883 
"AMP PEAK 11(12P13.33) WILD-TYPE"   "AMP PEAK 11(12P13.33) MUTATED" 
                     TCGA-AG-3887                      TCGA-AG-3892 
  "AMP PEAK 11(12P13.33) MUTATED" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-3893                      TCGA-AG-3894 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-3896                      TCGA-AG-3999 
  "AMP PEAK 11(12P13.33) MUTATED" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-4001                      TCGA-AG-4007 
  "AMP PEAK 11(12P13.33) MUTATED" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-4008                      TCGA-AG-4022 
"AMP PEAK 11(12P13.33) WILD-TYPE"   "AMP PEAK 11(12P13.33) MUTATED" 
                     TCGA-AG-A002                      TCGA-AG-A008 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-A00C                      TCGA-AG-A00H 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-A00Y                      TCGA-AG-A011 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-A014                      TCGA-AG-A015 
  "AMP PEAK 11(12P13.33) MUTATED"   "AMP PEAK 11(12P13.33) MUTATED" 
                     TCGA-AG-A016                      TCGA-AG-A01J 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-A01L                      TCGA-AG-A01N 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-A01W                      TCGA-AG-A01Y 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-A020                      TCGA-AG-A023 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-A025                      TCGA-AG-A026 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-A02G                      TCGA-AG-A02N 
  "AMP PEAK 11(12P13.33) MUTATED"   "AMP PEAK 11(12P13.33) MUTATED" 
                     TCGA-AG-A02X                      TCGA-AG-A032 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AH-6544                      TCGA-AH-6547 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AH-6643                      TCGA-AH-6644 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AH-6897                      TCGA-AH-6903 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-BM-6198                      TCGA-CI-6619 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-CI-6620                      TCGA-CI-6622 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-CI-6623                      TCGA-CI-6624 
"AMP PEAK 11(12P13.33) WILD-TYPE"   "AMP PEAK 11(12P13.33) MUTATED" 
                     TCGA-CL-4957                      TCGA-CL-5917 
"AMP PEAK 11(12P13.33) WILD-TYPE"   "AMP PEAK 11(12P13.33) MUTATED" 
                     TCGA-CL-5918                      TCGA-DC-4745 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-DC-4749                      TCGA-DC-5337 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-DC-5869                      TCGA-DC-6154 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-DC-6155                      TCGA-DC-6156 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-DC-6157                      TCGA-DC-6158 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-DC-6160                      TCGA-DC-6681 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-DC-6682                      TCGA-DC-6683 
  "AMP PEAK 11(12P13.33) MUTATED"   "AMP PEAK 11(12P13.33) MUTATED" 
                     TCGA-DT-5265                      TCGA-DY-A0XA 
  "AMP PEAK 11(12P13.33) MUTATED"   "AMP PEAK 11(12P13.33) MUTATED" 
                     TCGA-DY-A1DC                      TCGA-DY-A1DD 
"AMP PEAK 11(12P13.33) WILD-TYPE"   "AMP PEAK 11(12P13.33) MUTATED" 
                     TCGA-DY-A1DE                      TCGA-DY-A1DF 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-DY-A1DG                      TCGA-DY-A1H8 
"AMP PEAK 11(12P13.33) WILD-TYPE"   "AMP PEAK 11(12P13.33) MUTATED" 
                     TCGA-EF-5830                      TCGA-EF-5831 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-EI-6506                      TCGA-EI-6507 
"AMP PEAK 11(12P13.33) WILD-TYPE"   "AMP PEAK 11(12P13.33) MUTATED" 
                     TCGA-EI-6508                      TCGA-EI-6509 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-EI-6510                      TCGA-EI-6511 
  "AMP PEAK 11(12P13.33) MUTATED" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-EI-6512                      TCGA-EI-6513 
  "AMP PEAK 11(12P13.33) MUTATED" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-EI-6514                      TCGA-EI-6881 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-EI-6882                      TCGA-EI-6883 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-EI-6884                      TCGA-EI-6885 
"AMP PEAK 11(12P13.33) WILD-TYPE"   "AMP PEAK 11(12P13.33) MUTATED" 
                     TCGA-EI-6917                      TCGA-EI-7002 
"AMP PEAK 11(12P13.33) WILD-TYPE"   "AMP PEAK 11(12P13.33) MUTATED" 
                     TCGA-EI-7004                      TCGA-F5-6465 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-F5-6571                      TCGA-F5-6702 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-F5-6810                      TCGA-F5-6811 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-F5-6812                      TCGA-F5-6813 
  "AMP PEAK 11(12P13.33) MUTATED" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-F5-6814                      TCGA-F5-6861 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-F5-6863                      TCGA-F5-6864 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-G5-6233                      TCGA-G5-6235 
  "AMP PEAK 11(12P13.33) MUTATED" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-G5-6572                      TCGA-G5-6641 
"AMP PEAK 11(12P13.33) WILD-TYPE"   "AMP PEAK 11(12P13.33) MUTATED" 
                     TCGA-AF-2687                      TCGA-AF-2689 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AF-2690                      TCGA-AF-2691 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AF-2692                      TCGA-AF-2693 
"AMP PEAK 11(12P13.33) WILD-TYPE"   "AMP PEAK 11(12P13.33) MUTATED" 
                     TCGA-AF-3400                      TCGA-AF-3911 
  "AMP PEAK 11(12P13.33) MUTATED"   "AMP PEAK 11(12P13.33) MUTATED" 
                     TCGA-AF-3913                      TCGA-AF-4110 
"AMP PEAK 11(12P13.33) WILD-TYPE"   "AMP PEAK 11(12P13.33) MUTATED" 
                     TCGA-AF-5654                      TCGA-AF-6136 
  "AMP PEAK 11(12P13.33) MUTATED" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AF-6655                      TCGA-AF-6672 
"AMP PEAK 11(12P13.33) WILD-TYPE"   "AMP PEAK 11(12P13.33) MUTATED" 
                     TCGA-AG-3575                      TCGA-AG-3581 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-3582                      TCGA-AG-3583 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-3586                      TCGA-AG-3587 
"AMP PEAK 11(12P13.33) WILD-TYPE"   "AMP PEAK 11(12P13.33) MUTATED" 
                     TCGA-AG-3599                      TCGA-AG-3605 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-3726                      TCGA-AG-3727 
  "AMP PEAK 11(12P13.33) MUTATED" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-3731                      TCGA-AG-3742 
  "AMP PEAK 11(12P13.33) MUTATED" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-3878                      TCGA-AG-3883 
"AMP PEAK 11(12P13.33) WILD-TYPE"   "AMP PEAK 11(12P13.33) MUTATED" 
                     TCGA-AG-3887                      TCGA-AG-3892 
  "AMP PEAK 11(12P13.33) MUTATED" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-3893                      TCGA-AG-3894 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-3896                      TCGA-AG-3999 
  "AMP PEAK 11(12P13.33) MUTATED" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-4001                      TCGA-AG-4007 
  "AMP PEAK 11(12P13.33) MUTATED" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-4008                      TCGA-AG-4022 
"AMP PEAK 11(12P13.33) WILD-TYPE"   "AMP PEAK 11(12P13.33) MUTATED" 
                     TCGA-AG-A002                      TCGA-AG-A008 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-A00C                      TCGA-AG-A00H 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-A00Y                      TCGA-AG-A011 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-A014                      TCGA-AG-A015 
  "AMP PEAK 11(12P13.33) MUTATED"   "AMP PEAK 11(12P13.33) MUTATED" 
                     TCGA-AG-A016                      TCGA-AG-A01J 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-A01L                      TCGA-AG-A01N 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-A01W                      TCGA-AG-A01Y 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-A020                      TCGA-AG-A023 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-A025                      TCGA-AG-A026 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-A02G                      TCGA-AG-A02N 
  "AMP PEAK 11(12P13.33) MUTATED"   "AMP PEAK 11(12P13.33) MUTATED" 
                     TCGA-AG-A02X                      TCGA-AG-A032 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AH-6544                      TCGA-AH-6547 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AH-6643                      TCGA-AH-6644 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AH-6897                      TCGA-AH-6903 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-BM-6198                      TCGA-CI-6619 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-CI-6620                      TCGA-CI-6622 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-CI-6623                      TCGA-CI-6624 
"AMP PEAK 11(12P13.33) WILD-TYPE"   "AMP PEAK 11(12P13.33) MUTATED" 
                     TCGA-CL-4957                      TCGA-CL-5917 
"AMP PEAK 11(12P13.33) WILD-TYPE"   "AMP PEAK 11(12P13.33) MUTATED" 
                     TCGA-CL-5918                      TCGA-DC-4745 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-DC-4749                      TCGA-DC-5337 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-DC-5869                      TCGA-DC-6154 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-DC-6155                      TCGA-DC-6156 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-DC-6157                      TCGA-DC-6158 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-DC-6160                      TCGA-DC-6681 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-DC-6682                      TCGA-DC-6683 
  "AMP PEAK 11(12P13.33) MUTATED"   "AMP PEAK 11(12P13.33) MUTATED" 
                     TCGA-DT-5265                      TCGA-DY-A0XA 
  "AMP PEAK 11(12P13.33) MUTATED"   "AMP PEAK 11(12P13.33) MUTATED" 
                     TCGA-DY-A1DC                      TCGA-DY-A1DD 
"AMP PEAK 11(12P13.33) WILD-TYPE"   "AMP PEAK 11(12P13.33) MUTATED" 
                     TCGA-DY-A1DE                      TCGA-DY-A1DF 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-DY-A1DG                      TCGA-DY-A1H8 
"AMP PEAK 11(12P13.33) WILD-TYPE"   "AMP PEAK 11(12P13.33) MUTATED" 
                     TCGA-EF-5830                      TCGA-EF-5831 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-EI-6506                      TCGA-EI-6507 
"AMP PEAK 11(12P13.33) WILD-TYPE"   "AMP PEAK 11(12P13.33) MUTATED" 
                     TCGA-EI-6508                      TCGA-EI-6509 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-EI-6510                      TCGA-EI-6511 
  "AMP PEAK 11(12P13.33) MUTATED" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-EI-6512                      TCGA-EI-6513 
  "AMP PEAK 11(12P13.33) MUTATED" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-EI-6514                      TCGA-EI-6881 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-EI-6882                      TCGA-EI-6883 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-EI-6884                      TCGA-EI-6885 
"AMP PEAK 11(12P13.33) WILD-TYPE"   "AMP PEAK 11(12P13.33) MUTATED" 
                     TCGA-EI-6917                      TCGA-EI-7002 
"AMP PEAK 11(12P13.33) WILD-TYPE"   "AMP PEAK 11(12P13.33) MUTATED" 
                     TCGA-EI-7004                      TCGA-F5-6465 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-F5-6571                      TCGA-F5-6702 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-F5-6810                      TCGA-F5-6811 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-F5-6812                      TCGA-F5-6813 
  "AMP PEAK 11(12P13.33) MUTATED" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-F5-6814                      TCGA-F5-6861 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-F5-6863                      TCGA-F5-6864 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-G5-6233                      TCGA-G5-6235 
  "AMP PEAK 11(12P13.33) MUTATED" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-G5-6572                      TCGA-G5-6641 
"AMP PEAK 11(12P13.33) WILD-TYPE"   "AMP PEAK 11(12P13.33) MUTATED" 
[1] "hr=" "1.3"
D11V2, continuous
                                 vv
clus                              STAGE I STAGE II STAGE IIA STAGE IIB
  AMP PEAK 11(12P13.33) MUTATED         9        4        10         0
  AMP PEAK 11(12P13.33) WILD-TYPE      21        4        28         2
                                 vv
clus                              STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  AMP PEAK 11(12P13.33) MUTATED           1         0          2          4
  AMP PEAK 11(12P13.33) WILD-TYPE         1         5          7         19
                                 vv
clus                              STAGE IIIC STAGE IV STAGE IVA
  AMP PEAK 11(12P13.33) MUTATED            4        5         2
  AMP PEAK 11(12P13.33) WILD-TYPE         10       12         7
D11V3, multiclass
                                 vv
clus                              T1 T2 T3 T4
  AMP PEAK 11(12P13.33) MUTATED    2 11 25  3
  AMP PEAK 11(12P13.33) WILD-TYPE  7 18 84 11
D11V4, multiclass
    clus
vv   AMP PEAK 11(12P13.33) MUTATED AMP PEAK 11(12P13.33) WILD-TYPE
  T1                             2                               7
  T2                            11                              18
  T3                            25                              84
  T4                             3                              11
                                 vv
clus                              N0 N1 N2
  AMP PEAK 11(12P13.33) MUTATED   24  9  8
  AMP PEAK 11(12P13.33) WILD-TYPE 59 36 24
D11V5, multiclass
    clus
vv   AMP PEAK 11(12P13.33) MUTATED AMP PEAK 11(12P13.33) WILD-TYPE
  N0                            24                              59
  N1                             9                              36
  N2                             8                              24
                                 vv
clus                              M0 M1 M1A MX
  AMP PEAK 11(12P13.33) MUTATED   30  4   0  7
  AMP PEAK 11(12P13.33) WILD-TYPE 93 18   2  6
D11V6, multiclass
     clus
vv    AMP PEAK 11(12P13.33) MUTATED AMP PEAK 11(12P13.33) WILD-TYPE
  M0                             30                              93
  M1                              4                              18
  M1A                             0                               2
  MX                              7                               6
D11V7, binary
                                 cls
clus                               0  1
  AMP PEAK 11(12P13.33) MUTATED   17 24
  AMP PEAK 11(12P13.33) WILD-TYPE 57 64
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 11(12P13.33) MUTATED     17   24
  AMP PEAK 11(12P13.33) WILD-TYPE   57   64
        clus
vv       AMP PEAK 11(12P13.33) MUTATED AMP PEAK 11(12P13.33) WILD-TYPE
  FEMALE                            17                              57
  MALE                              24                              64
D11V8, binary
                                 cls
clus                                0   1
  AMP PEAK 11(12P13.33) MUTATED    33   5
  AMP PEAK 11(12P13.33) WILD-TYPE 110   8
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 11(12P13.33) MUTATED     33    5
  AMP PEAK 11(12P13.33) WILD-TYPE  110    8
                                clus
vv                               AMP PEAK 11(12P13.33) MUTATED
  RECTAL ADENOCARCINOMA                                     33
  RECTAL MUCINOUS ADENOCARCINOMA                             5
                                clus
vv                               AMP PEAK 11(12P13.33) WILD-TYPE
  RECTAL ADENOCARCINOMA                                      110
  RECTAL MUCINOUS ADENOCARCINOMA                               8
D11V9, binary
                                 cls
clus                                0   1
  AMP PEAK 11(12P13.33) MUTATED     3  38
  AMP PEAK 11(12P13.33) WILD-TYPE   3 118
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 11(12P13.33) MUTATED      3   38
  AMP PEAK 11(12P13.33) WILD-TYPE    3  118
     clus
vv    AMP PEAK 11(12P13.33) MUTATED AMP PEAK 11(12P13.33) WILD-TYPE
  NO                              3                               3
  YES                            38                             118
                                 vv
clus                              R0 R1 R2 RX
  AMP PEAK 11(12P13.33) MUTATED   28  0  3  2
  AMP PEAK 11(12P13.33) WILD-TYPE 93  2  9  1
D11V10, multiclass
    clus
vv   AMP PEAK 11(12P13.33) MUTATED AMP PEAK 11(12P13.33) WILD-TYPE
  R0                            28                              93
  R1                             0                               2
  R2                             3                               9
  RX                             2                               1
D11V11, continuous

Clustering(12) Variable = AMP PEAK 12(12P12.1) MUTATION ANALYSIS
D12V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 12(12P12.1) MUTATED   29  3
  AMP PEAK 12(12P12.1) WILD-TYPE 88 10
  AMP PEAK 12(12P12.1) MUTATED AMP PEAK 12(12P12.1) WILD-TYPE 
                            32                             98 
  AMP PEAK 12(12P12.1) MUTATED AMP PEAK 12(12P12.1) WILD-TYPE 
                             3                             10 
$`AMP PEAK 12(12P12.1) MUTATED`
TCGA-AF-2693 TCGA-AF-3400 TCGA-AF-3911 TCGA-AF-4110 TCGA-AF-5654 TCGA-AF-6672 
       19.10        12.72        25.02        14.50         8.45        10.39 
TCGA-AG-3587 TCGA-AG-3726 TCGA-AG-3731 TCGA-AG-3883 TCGA-AG-3887 TCGA-AG-3896 
        1.02         7.96         1.02         1.02         0.92         1.02 
TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A02G TCGA-AG-A02N 
        1.02         1.02        15.91        13.02        38.93        61.94 
TCGA-CI-6620 TCGA-CI-6624 TCGA-CL-5917 TCGA-DC-6682 TCGA-DC-6683 TCGA-DT-5265 
        6.02         4.70        60.00        13.02        10.06         5.29 
TCGA-DY-A1H8 TCGA-EI-6507 TCGA-EI-6510 TCGA-EI-6512 TCGA-EI-6885 TCGA-EI-7002 
       32.58        19.96        18.28        17.69        13.61        11.97 
TCGA-G5-6233 TCGA-G5-6641 
       18.25        26.43 

$`AMP PEAK 12(12P12.1) WILD-TYPE`
TCGA-AF-2687 TCGA-AF-2689 TCGA-AF-2690 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3913 
       24.13        17.95        17.23        10.62        13.55        10.39 
TCGA-AF-6136 TCGA-AF-6655 TCGA-AG-3575 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 
       15.35        11.67        12.00         1.02         1.02         2.01 
TCGA-AG-3586 TCGA-AG-3599 TCGA-AG-3605 TCGA-AG-3727 TCGA-AG-3742 TCGA-AG-3878 
        1.02         0.99         0.99         0.95         0.99         0.99 
TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-4022 
        1.02         0.99         0.99         1.02         1.02         0.99 
TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 
       20.94        13.91         6.02        25.94        23.01        17.03 
TCGA-AG-A016 TCGA-AG-A01J TCGA-AG-A01L TCGA-AG-A01N TCGA-AG-A01W TCGA-AG-A01Y 
        1.02         1.02        12.00        12.00        70.03        63.98 
TCGA-AG-A020 TCGA-AG-A023 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02X TCGA-AG-A032 
       10.98        51.98        49.94         1.94        40.96        38.01 
TCGA-AH-6544 TCGA-AH-6547 TCGA-AH-6643 TCGA-AH-6644 TCGA-AH-6897 TCGA-AH-6903 
        0.49         1.45         0.69         0.72         4.60         1.81 
TCGA-BM-6198 TCGA-CI-6619 TCGA-CI-6622 TCGA-CI-6623 TCGA-CL-4957 TCGA-CL-5918 
       10.19         6.02         6.94         9.37        13.97         7.99 
TCGA-DC-4745 TCGA-DC-4749 TCGA-DC-5337 TCGA-DC-5869 TCGA-DC-6154 TCGA-DC-6155 
       10.98        11.01        15.02        12.99        12.00        14.01 
TCGA-DC-6156 TCGA-DC-6157 TCGA-DC-6158 TCGA-DC-6160 TCGA-DC-6681 TCGA-DY-A0XA 
       15.02        36.00         6.97        30.05        12.95       126.41 
TCGA-DY-A1DC TCGA-DY-A1DD TCGA-DY-A1DE TCGA-DY-A1DF TCGA-DY-A1DG TCGA-EF-5830 
       41.33        57.24       129.27        24.13        51.48         0.49 
TCGA-EF-5831 TCGA-EI-6506 TCGA-EI-6508 TCGA-EI-6509 TCGA-EI-6511 TCGA-EI-6513 
        2.40        20.55        20.91        17.00        15.85        16.34 
TCGA-EI-6514 TCGA-EI-6881 TCGA-EI-6882 TCGA-EI-6883 TCGA-EI-6884 TCGA-EI-6917 
       16.31        16.37         8.61        11.51        10.78        17.46 
TCGA-EI-7004 TCGA-F5-6465 TCGA-F5-6571 TCGA-F5-6702 TCGA-F5-6810 TCGA-F5-6811 
        8.45         3.39         0.85         2.17         0.39         1.02 
TCGA-F5-6812 TCGA-F5-6813 TCGA-F5-6814 TCGA-F5-6861 TCGA-F5-6863 TCGA-F5-6864 
        0.66         0.69         0.53         1.08         0.76         0.46 
TCGA-G5-6235 TCGA-G5-6572 
       55.76        47.08 

  AMP PEAK 12(12P12.1) MUTATED AMP PEAK 12(12P12.1) WILD-TYPE 
                          0.92                           0.39 
  AMP PEAK 12(12P12.1) MUTATED AMP PEAK 12(12P12.1) WILD-TYPE 
                         61.94                         129.27 
  AMP PEAK 12(12P12.1) MUTATED AMP PEAK 12(12P12.1) WILD-TYPE 
                         12.87                          10.88 
[1] "0.9 - 61.9 (12.9)"  "0.4 - 129.3 (10.9)"
                    TCGA-AF-2687                     TCGA-AF-2689 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"AMP PEAK 12(12P12.1) WILD-TYPE"   "AMP PEAK 12(12P12.1) MUTATED" 
                    TCGA-AF-3400                     TCGA-AF-3911 
  "AMP PEAK 12(12P12.1) MUTATED"   "AMP PEAK 12(12P12.1) MUTATED" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"AMP PEAK 12(12P12.1) WILD-TYPE"   "AMP PEAK 12(12P12.1) MUTATED" 
                    TCGA-AF-5654                     TCGA-AF-6136 
  "AMP PEAK 12(12P12.1) MUTATED" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"AMP PEAK 12(12P12.1) WILD-TYPE"   "AMP PEAK 12(12P12.1) MUTATED" 
                    TCGA-AG-3575                     TCGA-AG-3581 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-3582                     TCGA-AG-3583 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"AMP PEAK 12(12P12.1) WILD-TYPE"   "AMP PEAK 12(12P12.1) MUTATED" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
  "AMP PEAK 12(12P12.1) MUTATED" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-3731                     TCGA-AG-3742 
  "AMP PEAK 12(12P12.1) MUTATED" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"AMP PEAK 12(12P12.1) WILD-TYPE"   "AMP PEAK 12(12P12.1) MUTATED" 
                    TCGA-AG-3887                     TCGA-AG-3892 
  "AMP PEAK 12(12P12.1) MUTATED" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
  "AMP PEAK 12(12P12.1) MUTATED"   "AMP PEAK 12(12P12.1) MUTATED" 
                    TCGA-AG-4001                     TCGA-AG-4007 
  "AMP PEAK 12(12P12.1) MUTATED" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-4008                     TCGA-AG-4022 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
  "AMP PEAK 12(12P12.1) MUTATED"   "AMP PEAK 12(12P12.1) MUTATED" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
  "AMP PEAK 12(12P12.1) MUTATED"   "AMP PEAK 12(12P12.1) MUTATED" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AH-6544                     TCGA-AH-6547 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AH-6897                     TCGA-AH-6903 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-CI-6620                     TCGA-CI-6622 
  "AMP PEAK 12(12P12.1) MUTATED" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
"AMP PEAK 12(12P12.1) WILD-TYPE"   "AMP PEAK 12(12P12.1) MUTATED" 
                    TCGA-CL-4957                     TCGA-CL-5917 
"AMP PEAK 12(12P12.1) WILD-TYPE"   "AMP PEAK 12(12P12.1) MUTATED" 
                    TCGA-CL-5918                     TCGA-DC-4745 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-DC-4749                     TCGA-DC-5337 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-DC-6155                     TCGA-DC-6156 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-DC-6157                     TCGA-DC-6158 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-DC-6160                     TCGA-DC-6681 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
  "AMP PEAK 12(12P12.1) MUTATED"   "AMP PEAK 12(12P12.1) MUTATED" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
  "AMP PEAK 12(12P12.1) MUTATED" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
"AMP PEAK 12(12P12.1) WILD-TYPE"   "AMP PEAK 12(12P12.1) MUTATED" 
                    TCGA-EF-5830                     TCGA-EF-5831 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-EI-6506                     TCGA-EI-6507 
"AMP PEAK 12(12P12.1) WILD-TYPE"   "AMP PEAK 12(12P12.1) MUTATED" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-EI-6510                     TCGA-EI-6511 
  "AMP PEAK 12(12P12.1) MUTATED" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-EI-6512                     TCGA-EI-6513 
  "AMP PEAK 12(12P12.1) MUTATED" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-EI-6514                     TCGA-EI-6881 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-EI-6884                     TCGA-EI-6885 
"AMP PEAK 12(12P12.1) WILD-TYPE"   "AMP PEAK 12(12P12.1) MUTATED" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"AMP PEAK 12(12P12.1) WILD-TYPE"   "AMP PEAK 12(12P12.1) MUTATED" 
                    TCGA-EI-7004                     TCGA-F5-6465 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-F5-6571                     TCGA-F5-6702 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-F5-6810                     TCGA-F5-6811 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-F5-6812                     TCGA-F5-6813 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-G5-6233                     TCGA-G5-6235 
  "AMP PEAK 12(12P12.1) MUTATED" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"AMP PEAK 12(12P12.1) WILD-TYPE"   "AMP PEAK 12(12P12.1) MUTATED" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"AMP PEAK 12(12P12.1) WILD-TYPE"   "AMP PEAK 12(12P12.1) MUTATED" 
                    TCGA-AF-3400                     TCGA-AF-3911 
  "AMP PEAK 12(12P12.1) MUTATED"   "AMP PEAK 12(12P12.1) MUTATED" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"AMP PEAK 12(12P12.1) WILD-TYPE"   "AMP PEAK 12(12P12.1) MUTATED" 
                    TCGA-AF-5654                     TCGA-AF-6136 
  "AMP PEAK 12(12P12.1) MUTATED" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"AMP PEAK 12(12P12.1) WILD-TYPE"   "AMP PEAK 12(12P12.1) MUTATED" 
                    TCGA-AG-3575                     TCGA-AG-3581 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-3582                     TCGA-AG-3583 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"AMP PEAK 12(12P12.1) WILD-TYPE"   "AMP PEAK 12(12P12.1) MUTATED" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
  "AMP PEAK 12(12P12.1) MUTATED" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-3731                     TCGA-AG-3742 
  "AMP PEAK 12(12P12.1) MUTATED" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"AMP PEAK 12(12P12.1) WILD-TYPE"   "AMP PEAK 12(12P12.1) MUTATED" 
                    TCGA-AG-3887                     TCGA-AG-3892 
  "AMP PEAK 12(12P12.1) MUTATED" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
  "AMP PEAK 12(12P12.1) MUTATED"   "AMP PEAK 12(12P12.1) MUTATED" 
                    TCGA-AG-4001                     TCGA-AG-4007 
  "AMP PEAK 12(12P12.1) MUTATED" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-4008                     TCGA-AG-4022 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
  "AMP PEAK 12(12P12.1) MUTATED"   "AMP PEAK 12(12P12.1) MUTATED" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
  "AMP PEAK 12(12P12.1) MUTATED"   "AMP PEAK 12(12P12.1) MUTATED" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AH-6544                     TCGA-AH-6547 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AH-6897                     TCGA-AH-6903 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-CI-6620                     TCGA-CI-6622 
  "AMP PEAK 12(12P12.1) MUTATED" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
"AMP PEAK 12(12P12.1) WILD-TYPE"   "AMP PEAK 12(12P12.1) MUTATED" 
                    TCGA-CL-4957                     TCGA-CL-5917 
"AMP PEAK 12(12P12.1) WILD-TYPE"   "AMP PEAK 12(12P12.1) MUTATED" 
                    TCGA-CL-5918                     TCGA-DC-4745 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-DC-4749                     TCGA-DC-5337 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-DC-6155                     TCGA-DC-6156 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-DC-6157                     TCGA-DC-6158 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-DC-6160                     TCGA-DC-6681 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
  "AMP PEAK 12(12P12.1) MUTATED"   "AMP PEAK 12(12P12.1) MUTATED" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
  "AMP PEAK 12(12P12.1) MUTATED" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
"AMP PEAK 12(12P12.1) WILD-TYPE"   "AMP PEAK 12(12P12.1) MUTATED" 
                    TCGA-EF-5830                     TCGA-EF-5831 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-EI-6506                     TCGA-EI-6507 
"AMP PEAK 12(12P12.1) WILD-TYPE"   "AMP PEAK 12(12P12.1) MUTATED" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-EI-6510                     TCGA-EI-6511 
  "AMP PEAK 12(12P12.1) MUTATED" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-EI-6512                     TCGA-EI-6513 
  "AMP PEAK 12(12P12.1) MUTATED" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-EI-6514                     TCGA-EI-6881 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-EI-6884                     TCGA-EI-6885 
"AMP PEAK 12(12P12.1) WILD-TYPE"   "AMP PEAK 12(12P12.1) MUTATED" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"AMP PEAK 12(12P12.1) WILD-TYPE"   "AMP PEAK 12(12P12.1) MUTATED" 
                    TCGA-EI-7004                     TCGA-F5-6465 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-F5-6571                     TCGA-F5-6702 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-F5-6810                     TCGA-F5-6811 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-F5-6812                     TCGA-F5-6813 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-G5-6233                     TCGA-G5-6235 
  "AMP PEAK 12(12P12.1) MUTATED" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"AMP PEAK 12(12P12.1) WILD-TYPE"   "AMP PEAK 12(12P12.1) MUTATED" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"AMP PEAK 12(12P12.1) WILD-TYPE"   "AMP PEAK 12(12P12.1) MUTATED" 
                    TCGA-AF-3400                     TCGA-AF-3911 
  "AMP PEAK 12(12P12.1) MUTATED"   "AMP PEAK 12(12P12.1) MUTATED" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"AMP PEAK 12(12P12.1) WILD-TYPE"   "AMP PEAK 12(12P12.1) MUTATED" 
                    TCGA-AF-5654                     TCGA-AF-6136 
  "AMP PEAK 12(12P12.1) MUTATED" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"AMP PEAK 12(12P12.1) WILD-TYPE"   "AMP PEAK 12(12P12.1) MUTATED" 
                    TCGA-AG-3575                     TCGA-AG-3581 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-3582                     TCGA-AG-3583 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"AMP PEAK 12(12P12.1) WILD-TYPE"   "AMP PEAK 12(12P12.1) MUTATED" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
  "AMP PEAK 12(12P12.1) MUTATED" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-3731                     TCGA-AG-3742 
  "AMP PEAK 12(12P12.1) MUTATED" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"AMP PEAK 12(12P12.1) WILD-TYPE"   "AMP PEAK 12(12P12.1) MUTATED" 
                    TCGA-AG-3887                     TCGA-AG-3892 
  "AMP PEAK 12(12P12.1) MUTATED" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
  "AMP PEAK 12(12P12.1) MUTATED"   "AMP PEAK 12(12P12.1) MUTATED" 
                    TCGA-AG-4001                     TCGA-AG-4007 
  "AMP PEAK 12(12P12.1) MUTATED" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-4008                     TCGA-AG-4022 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
  "AMP PEAK 12(12P12.1) MUTATED"   "AMP PEAK 12(12P12.1) MUTATED" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
  "AMP PEAK 12(12P12.1) MUTATED"   "AMP PEAK 12(12P12.1) MUTATED" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AH-6544                     TCGA-AH-6547 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AH-6897                     TCGA-AH-6903 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-CI-6620                     TCGA-CI-6622 
  "AMP PEAK 12(12P12.1) MUTATED" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
"AMP PEAK 12(12P12.1) WILD-TYPE"   "AMP PEAK 12(12P12.1) MUTATED" 
                    TCGA-CL-4957                     TCGA-CL-5917 
"AMP PEAK 12(12P12.1) WILD-TYPE"   "AMP PEAK 12(12P12.1) MUTATED" 
                    TCGA-CL-5918                     TCGA-DC-4745 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-DC-4749                     TCGA-DC-5337 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-DC-6155                     TCGA-DC-6156 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-DC-6157                     TCGA-DC-6158 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-DC-6160                     TCGA-DC-6681 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
  "AMP PEAK 12(12P12.1) MUTATED"   "AMP PEAK 12(12P12.1) MUTATED" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
  "AMP PEAK 12(12P12.1) MUTATED" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
"AMP PEAK 12(12P12.1) WILD-TYPE"   "AMP PEAK 12(12P12.1) MUTATED" 
                    TCGA-EF-5830                     TCGA-EF-5831 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-EI-6506                     TCGA-EI-6507 
"AMP PEAK 12(12P12.1) WILD-TYPE"   "AMP PEAK 12(12P12.1) MUTATED" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-EI-6510                     TCGA-EI-6511 
  "AMP PEAK 12(12P12.1) MUTATED" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-EI-6512                     TCGA-EI-6513 
  "AMP PEAK 12(12P12.1) MUTATED" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-EI-6514                     TCGA-EI-6881 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-EI-6884                     TCGA-EI-6885 
"AMP PEAK 12(12P12.1) WILD-TYPE"   "AMP PEAK 12(12P12.1) MUTATED" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"AMP PEAK 12(12P12.1) WILD-TYPE"   "AMP PEAK 12(12P12.1) MUTATED" 
                    TCGA-EI-7004                     TCGA-F5-6465 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-F5-6571                     TCGA-F5-6702 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-F5-6810                     TCGA-F5-6811 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-F5-6812                     TCGA-F5-6813 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-G5-6233                     TCGA-G5-6235 
  "AMP PEAK 12(12P12.1) MUTATED" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"AMP PEAK 12(12P12.1) WILD-TYPE"   "AMP PEAK 12(12P12.1) MUTATED" 
[1] "hr=" "1.1"
D12V2, continuous
                                vv
clus                             STAGE I STAGE II STAGE IIA STAGE IIB STAGE IIC
  AMP PEAK 12(12P12.1) MUTATED         9        3         8         0         1
  AMP PEAK 12(12P12.1) WILD-TYPE      21        5        30         2         1
                                vv
clus                             STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  AMP PEAK 12(12P12.1) MUTATED           0          2          3          5
  AMP PEAK 12(12P12.1) WILD-TYPE         5          7         20          9
                                vv
clus                             STAGE IV STAGE IVA
  AMP PEAK 12(12P12.1) MUTATED          6         3
  AMP PEAK 12(12P12.1) WILD-TYPE       11         6
D12V3, multiclass
                                vv
clus                             T1 T2 T3 T4
  AMP PEAK 12(12P12.1) MUTATED    2 11 24  3
  AMP PEAK 12(12P12.1) WILD-TYPE  7 18 85 11
D12V4, multiclass
    clus
vv   AMP PEAK 12(12P12.1) MUTATED AMP PEAK 12(12P12.1) WILD-TYPE
  T1                            2                              7
  T2                           11                             18
  T3                           24                             85
  T4                            3                             11
                                vv
clus                             N0 N1 N2
  AMP PEAK 12(12P12.1) MUTATED   21  9 10
  AMP PEAK 12(12P12.1) WILD-TYPE 62 36 22
D12V5, multiclass
    clus
vv   AMP PEAK 12(12P12.1) MUTATED AMP PEAK 12(12P12.1) WILD-TYPE
  N0                           21                             62
  N1                            9                             36
  N2                           10                             22
                                vv
clus                             M0 M1 M1A MX
  AMP PEAK 12(12P12.1) MUTATED   27  6   0  7
  AMP PEAK 12(12P12.1) WILD-TYPE 96 16   2  6
D12V6, multiclass
     clus
vv    AMP PEAK 12(12P12.1) MUTATED AMP PEAK 12(12P12.1) WILD-TYPE
  M0                            27                             96
  M1                             6                             16
  M1A                            0                              2
  MX                             7                              6
D12V7, binary
                                cls
clus                              0  1
  AMP PEAK 12(12P12.1) MUTATED   17 23
  AMP PEAK 12(12P12.1) WILD-TYPE 57 65
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 12(12P12.1) MUTATED     17   23
  AMP PEAK 12(12P12.1) WILD-TYPE   57   65
        clus
vv       AMP PEAK 12(12P12.1) MUTATED AMP PEAK 12(12P12.1) WILD-TYPE
  FEMALE                           17                             57
  MALE                             23                             65
D12V8, binary
                                cls
clus                               0   1
  AMP PEAK 12(12P12.1) MUTATED    32   5
  AMP PEAK 12(12P12.1) WILD-TYPE 111   8
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 12(12P12.1) MUTATED     32    5
  AMP PEAK 12(12P12.1) WILD-TYPE  111    8
                                clus
vv                               AMP PEAK 12(12P12.1) MUTATED
  RECTAL ADENOCARCINOMA                                    32
  RECTAL MUCINOUS ADENOCARCINOMA                            5
                                clus
vv                               AMP PEAK 12(12P12.1) WILD-TYPE
  RECTAL ADENOCARCINOMA                                     111
  RECTAL MUCINOUS ADENOCARCINOMA                              8
D12V9, binary
                                cls
clus                               0   1
  AMP PEAK 12(12P12.1) MUTATED     3  37
  AMP PEAK 12(12P12.1) WILD-TYPE   3 119
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 12(12P12.1) MUTATED      3   37
  AMP PEAK 12(12P12.1) WILD-TYPE    3  119
     clus
vv    AMP PEAK 12(12P12.1) MUTATED AMP PEAK 12(12P12.1) WILD-TYPE
  NO                             3                              3
  YES                           37                            119
                                vv
clus                             R0 R1 R2 RX
  AMP PEAK 12(12P12.1) MUTATED   27  0  4  2
  AMP PEAK 12(12P12.1) WILD-TYPE 94  2  8  1
D12V10, multiclass
    clus
vv   AMP PEAK 12(12P12.1) MUTATED AMP PEAK 12(12P12.1) WILD-TYPE
  R0                           27                             94
  R1                            0                              2
  R2                            4                              8
  RX                            2                              1
D12V11, continuous

Clustering(13) Variable = AMP PEAK 13(13Q12.13) MUTATION ANALYSIS
D13V1, survival
                                 sevent
clus2                              0  1
  AMP PEAK 13(13Q12.13) MUTATED   89 13
  AMP PEAK 13(13Q12.13) WILD-TYPE 28  0
  AMP PEAK 13(13Q12.13) MUTATED AMP PEAK 13(13Q12.13) WILD-TYPE 
                            102                              28 
  AMP PEAK 13(13Q12.13) MUTATED AMP PEAK 13(13Q12.13) WILD-TYPE 
                             13                               0 
$`AMP PEAK 13(13Q12.13) MUTATED`
TCGA-AF-2687 TCGA-AF-2689 TCGA-AF-2690 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-2693 
       24.13        17.95        17.23        10.62        13.55        19.10 
TCGA-AF-3911 TCGA-AF-3913 TCGA-AF-4110 TCGA-AF-5654 TCGA-AF-6136 TCGA-AF-6655 
       25.02        10.39        14.50         8.45        15.35        11.67 
TCGA-AF-6672 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3586 TCGA-AG-3587 
       10.39         1.02         1.02         2.01         1.02         1.02 
TCGA-AG-3605 TCGA-AG-3727 TCGA-AG-3742 TCGA-AG-3883 TCGA-AG-3887 TCGA-AG-3893 
        0.99         0.95         0.99         1.02         0.92         0.99 
TCGA-AG-3894 TCGA-AG-3896 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 
        0.99         1.02         1.02         1.02         1.02         1.02 
TCGA-AG-4022 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 
        0.99         6.02        25.94        23.01        17.03        15.91 
TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A023 TCGA-AG-A025 TCGA-AG-A026 
       13.02         1.02        12.00        51.98        49.94         1.94 
TCGA-AG-A02G TCGA-AG-A032 TCGA-AH-6544 TCGA-AH-6643 TCGA-AH-6644 TCGA-AH-6897 
       38.93        38.01         0.49         0.69         0.72         4.60 
TCGA-CI-6619 TCGA-CI-6620 TCGA-CI-6622 TCGA-CI-6623 TCGA-CI-6624 TCGA-CL-4957 
        6.02         6.02         6.94         9.37         4.70        13.97 
TCGA-CL-5917 TCGA-CL-5918 TCGA-DC-4745 TCGA-DC-4749 TCGA-DC-5337 TCGA-DC-5869 
       60.00         7.99        10.98        11.01        15.02        12.99 
TCGA-DC-6154 TCGA-DC-6156 TCGA-DC-6157 TCGA-DC-6158 TCGA-DC-6160 TCGA-DC-6682 
       12.00        15.02        36.00         6.97        30.05        13.02 
TCGA-DC-6683 TCGA-DY-A0XA TCGA-DY-A1DC TCGA-DY-A1DD TCGA-DY-A1DE TCGA-DY-A1DF 
       10.06       126.41        41.33        57.24       129.27        24.13 
TCGA-DY-A1DG TCGA-DY-A1H8 TCGA-EF-5830 TCGA-EF-5831 TCGA-EI-6506 TCGA-EI-6508 
       51.48        32.58         0.49         2.40        20.55        20.91 
TCGA-EI-6509 TCGA-EI-6510 TCGA-EI-6511 TCGA-EI-6512 TCGA-EI-6513 TCGA-EI-6514 
       17.00        18.28        15.85        17.69        16.34        16.31 
TCGA-EI-6881 TCGA-EI-6883 TCGA-EI-6884 TCGA-EI-7002 TCGA-EI-7004 TCGA-F5-6465 
       16.37        11.51        10.78        11.97         8.45         3.39 
TCGA-F5-6571 TCGA-F5-6702 TCGA-F5-6810 TCGA-F5-6811 TCGA-F5-6812 TCGA-F5-6813 
        0.85         2.17         0.39         1.02         0.66         0.69 
TCGA-F5-6863 TCGA-F5-6864 TCGA-G5-6233 TCGA-G5-6235 TCGA-G5-6572 TCGA-G5-6641 
        0.76         0.46        18.25        55.76        47.08        26.43 

$`AMP PEAK 13(13Q12.13) WILD-TYPE`
TCGA-AF-3400 TCGA-AG-3575 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3731 TCGA-AG-3878 
       12.72        12.00         0.99         7.96         1.02         0.99 
TCGA-AG-3892 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A01J TCGA-AG-A01N TCGA-AG-A01W 
        1.02        20.94        13.91         1.02        12.00        70.03 
TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A02N TCGA-AG-A02X TCGA-AH-6547 TCGA-AH-6903 
       63.98        10.98        61.94        40.96         1.45         1.81 
TCGA-BM-6198 TCGA-DC-6155 TCGA-DC-6681 TCGA-DT-5265 TCGA-EI-6507 TCGA-EI-6882 
       10.19        14.01        12.95         5.29        19.96         8.61 
TCGA-EI-6885 TCGA-EI-6917 TCGA-F5-6814 TCGA-F5-6861 
       13.61        17.46         0.53         1.08 

  AMP PEAK 13(13Q12.13) MUTATED AMP PEAK 13(13Q12.13) WILD-TYPE 
                           0.39                            0.53 
  AMP PEAK 13(13Q12.13) MUTATED AMP PEAK 13(13Q12.13) WILD-TYPE 
                         129.27                           70.03 
  AMP PEAK 13(13Q12.13) MUTATED AMP PEAK 13(13Q12.13) WILD-TYPE 
                         10.995                          11.490 
[1] "0.4 - 129.3 (11.0)" "0.5 - 70.0 (11.5)" 
                     TCGA-AF-2687                      TCGA-AF-2689 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AF-2690                      TCGA-AF-2691 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AF-2692                      TCGA-AF-2693 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AF-3400                      TCGA-AF-3911 
"AMP PEAK 13(13Q12.13) WILD-TYPE"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AF-3913                      TCGA-AF-4110 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AF-5654                      TCGA-AF-6136 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AF-6655                      TCGA-AF-6672 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AG-3575                      TCGA-AG-3581 
"AMP PEAK 13(13Q12.13) WILD-TYPE"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AG-3582                      TCGA-AG-3583 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AG-3586                      TCGA-AG-3587 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AG-3599                      TCGA-AG-3605 
"AMP PEAK 13(13Q12.13) WILD-TYPE"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AG-3726                      TCGA-AG-3727 
"AMP PEAK 13(13Q12.13) WILD-TYPE"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AG-3731                      TCGA-AG-3742 
"AMP PEAK 13(13Q12.13) WILD-TYPE"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AG-3878                      TCGA-AG-3883 
"AMP PEAK 13(13Q12.13) WILD-TYPE"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AG-3887                      TCGA-AG-3892 
  "AMP PEAK 13(13Q12.13) MUTATED" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-AG-3893                      TCGA-AG-3894 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AG-3896                      TCGA-AG-3999 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AG-4001                      TCGA-AG-4007 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AG-4008                      TCGA-AG-4022 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AG-A002                      TCGA-AG-A008 
"AMP PEAK 13(13Q12.13) WILD-TYPE" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-AG-A00C                      TCGA-AG-A00H 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AG-A00Y                      TCGA-AG-A011 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AG-A014                      TCGA-AG-A015 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AG-A016                      TCGA-AG-A01J 
  "AMP PEAK 13(13Q12.13) MUTATED" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-AG-A01L                      TCGA-AG-A01N 
  "AMP PEAK 13(13Q12.13) MUTATED" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-AG-A01W                      TCGA-AG-A01Y 
"AMP PEAK 13(13Q12.13) WILD-TYPE" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-AG-A020                      TCGA-AG-A023 
"AMP PEAK 13(13Q12.13) WILD-TYPE"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AG-A025                      TCGA-AG-A026 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AG-A02G                      TCGA-AG-A02N 
  "AMP PEAK 13(13Q12.13) MUTATED" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-AG-A02X                      TCGA-AG-A032 
"AMP PEAK 13(13Q12.13) WILD-TYPE"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AH-6544                      TCGA-AH-6547 
  "AMP PEAK 13(13Q12.13) MUTATED" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-AH-6643                      TCGA-AH-6644 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AH-6897                      TCGA-AH-6903 
  "AMP PEAK 13(13Q12.13) MUTATED" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-BM-6198                      TCGA-CI-6619 
"AMP PEAK 13(13Q12.13) WILD-TYPE"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-CI-6620                      TCGA-CI-6622 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-CI-6623                      TCGA-CI-6624 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-CL-4957                      TCGA-CL-5917 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-CL-5918                      TCGA-DC-4745 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-DC-4749                      TCGA-DC-5337 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-DC-5869                      TCGA-DC-6154 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-DC-6155                      TCGA-DC-6156 
"AMP PEAK 13(13Q12.13) WILD-TYPE"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-DC-6157                      TCGA-DC-6158 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-DC-6160                      TCGA-DC-6681 
  "AMP PEAK 13(13Q12.13) MUTATED" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-DC-6682                      TCGA-DC-6683 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-DT-5265                      TCGA-DY-A0XA 
"AMP PEAK 13(13Q12.13) WILD-TYPE"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-DY-A1DC                      TCGA-DY-A1DD 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-DY-A1DE                      TCGA-DY-A1DF 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-DY-A1DG                      TCGA-DY-A1H8 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-EF-5830                      TCGA-EF-5831 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-EI-6506                      TCGA-EI-6507 
  "AMP PEAK 13(13Q12.13) MUTATED" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-EI-6508                      TCGA-EI-6509 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-EI-6510                      TCGA-EI-6511 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-EI-6512                      TCGA-EI-6513 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-EI-6514                      TCGA-EI-6881 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-EI-6882                      TCGA-EI-6883 
"AMP PEAK 13(13Q12.13) WILD-TYPE"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-EI-6884                      TCGA-EI-6885 
  "AMP PEAK 13(13Q12.13) MUTATED" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-EI-6917                      TCGA-EI-7002 
"AMP PEAK 13(13Q12.13) WILD-TYPE"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-EI-7004                      TCGA-F5-6465 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-F5-6571                      TCGA-F5-6702 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-F5-6810                      TCGA-F5-6811 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-F5-6812                      TCGA-F5-6813 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-F5-6814                      TCGA-F5-6861 
"AMP PEAK 13(13Q12.13) WILD-TYPE" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-F5-6863                      TCGA-F5-6864 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-G5-6233                      TCGA-G5-6235 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-G5-6572                      TCGA-G5-6641 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AF-2687                      TCGA-AF-2689 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AF-2690                      TCGA-AF-2691 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AF-2692                      TCGA-AF-2693 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AF-3400                      TCGA-AF-3911 
"AMP PEAK 13(13Q12.13) WILD-TYPE"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AF-3913                      TCGA-AF-4110 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AF-5654                      TCGA-AF-6136 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AF-6655                      TCGA-AF-6672 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AG-3575                      TCGA-AG-3581 
"AMP PEAK 13(13Q12.13) WILD-TYPE"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AG-3582                      TCGA-AG-3583 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AG-3586                      TCGA-AG-3587 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AG-3599                      TCGA-AG-3605 
"AMP PEAK 13(13Q12.13) WILD-TYPE"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AG-3726                      TCGA-AG-3727 
"AMP PEAK 13(13Q12.13) WILD-TYPE"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AG-3731                      TCGA-AG-3742 
"AMP PEAK 13(13Q12.13) WILD-TYPE"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AG-3878                      TCGA-AG-3883 
"AMP PEAK 13(13Q12.13) WILD-TYPE"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AG-3887                      TCGA-AG-3892 
  "AMP PEAK 13(13Q12.13) MUTATED" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-AG-3893                      TCGA-AG-3894 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AG-3896                      TCGA-AG-3999 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AG-4001                      TCGA-AG-4007 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AG-4008                      TCGA-AG-4022 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AG-A002                      TCGA-AG-A008 
"AMP PEAK 13(13Q12.13) WILD-TYPE" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-AG-A00C                      TCGA-AG-A00H 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AG-A00Y                      TCGA-AG-A011 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AG-A014                      TCGA-AG-A015 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AG-A016                      TCGA-AG-A01J 
  "AMP PEAK 13(13Q12.13) MUTATED" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-AG-A01L                      TCGA-AG-A01N 
  "AMP PEAK 13(13Q12.13) MUTATED" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-AG-A01W                      TCGA-AG-A01Y 
"AMP PEAK 13(13Q12.13) WILD-TYPE" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-AG-A020                      TCGA-AG-A023 
"AMP PEAK 13(13Q12.13) WILD-TYPE"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AG-A025                      TCGA-AG-A026 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AG-A02G                      TCGA-AG-A02N 
  "AMP PEAK 13(13Q12.13) MUTATED" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-AG-A02X                      TCGA-AG-A032 
"AMP PEAK 13(13Q12.13) WILD-TYPE"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AH-6544                      TCGA-AH-6547 
  "AMP PEAK 13(13Q12.13) MUTATED" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-AH-6643                      TCGA-AH-6644 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AH-6897                      TCGA-AH-6903 
  "AMP PEAK 13(13Q12.13) MUTATED" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-BM-6198                      TCGA-CI-6619 
"AMP PEAK 13(13Q12.13) WILD-TYPE"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-CI-6620                      TCGA-CI-6622 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-CI-6623                      TCGA-CI-6624 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-CL-4957                      TCGA-CL-5917 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-CL-5918                      TCGA-DC-4745 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-DC-4749                      TCGA-DC-5337 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-DC-5869                      TCGA-DC-6154 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-DC-6155                      TCGA-DC-6156 
"AMP PEAK 13(13Q12.13) WILD-TYPE"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-DC-6157                      TCGA-DC-6158 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-DC-6160                      TCGA-DC-6681 
  "AMP PEAK 13(13Q12.13) MUTATED" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-DC-6682                      TCGA-DC-6683 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-DT-5265                      TCGA-DY-A0XA 
"AMP PEAK 13(13Q12.13) WILD-TYPE"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-DY-A1DC                      TCGA-DY-A1DD 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-DY-A1DE                      TCGA-DY-A1DF 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-DY-A1DG                      TCGA-DY-A1H8 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-EF-5830                      TCGA-EF-5831 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-EI-6506                      TCGA-EI-6507 
  "AMP PEAK 13(13Q12.13) MUTATED" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-EI-6508                      TCGA-EI-6509 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-EI-6510                      TCGA-EI-6511 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-EI-6512                      TCGA-EI-6513 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-EI-6514                      TCGA-EI-6881 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-EI-6882                      TCGA-EI-6883 
"AMP PEAK 13(13Q12.13) WILD-TYPE"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-EI-6884                      TCGA-EI-6885 
  "AMP PEAK 13(13Q12.13) MUTATED" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-EI-6917                      TCGA-EI-7002 
"AMP PEAK 13(13Q12.13) WILD-TYPE"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-EI-7004                      TCGA-F5-6465 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-F5-6571                      TCGA-F5-6702 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-F5-6810                      TCGA-F5-6811 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-F5-6812                      TCGA-F5-6813 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-F5-6814                      TCGA-F5-6861 
"AMP PEAK 13(13Q12.13) WILD-TYPE" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-F5-6863                      TCGA-F5-6864 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-G5-6233                      TCGA-G5-6235 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-G5-6572                      TCGA-G5-6641 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AF-2687                      TCGA-AF-2689 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AF-2690                      TCGA-AF-2691 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AF-2692                      TCGA-AF-2693 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AF-3400                      TCGA-AF-3911 
"AMP PEAK 13(13Q12.13) WILD-TYPE"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AF-3913                      TCGA-AF-4110 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AF-5654                      TCGA-AF-6136 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AF-6655                      TCGA-AF-6672 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AG-3575                      TCGA-AG-3581 
"AMP PEAK 13(13Q12.13) WILD-TYPE"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AG-3582                      TCGA-AG-3583 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AG-3586                      TCGA-AG-3587 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AG-3599                      TCGA-AG-3605 
"AMP PEAK 13(13Q12.13) WILD-TYPE"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AG-3726                      TCGA-AG-3727 
"AMP PEAK 13(13Q12.13) WILD-TYPE"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AG-3731                      TCGA-AG-3742 
"AMP PEAK 13(13Q12.13) WILD-TYPE"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AG-3878                      TCGA-AG-3883 
"AMP PEAK 13(13Q12.13) WILD-TYPE"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AG-3887                      TCGA-AG-3892 
  "AMP PEAK 13(13Q12.13) MUTATED" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-AG-3893                      TCGA-AG-3894 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AG-3896                      TCGA-AG-3999 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AG-4001                      TCGA-AG-4007 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AG-4008                      TCGA-AG-4022 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AG-A002                      TCGA-AG-A008 
"AMP PEAK 13(13Q12.13) WILD-TYPE" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-AG-A00C                      TCGA-AG-A00H 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AG-A00Y                      TCGA-AG-A011 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AG-A014                      TCGA-AG-A015 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AG-A016                      TCGA-AG-A01J 
  "AMP PEAK 13(13Q12.13) MUTATED" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-AG-A01L                      TCGA-AG-A01N 
  "AMP PEAK 13(13Q12.13) MUTATED" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-AG-A01W                      TCGA-AG-A01Y 
"AMP PEAK 13(13Q12.13) WILD-TYPE" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-AG-A020                      TCGA-AG-A023 
"AMP PEAK 13(13Q12.13) WILD-TYPE"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AG-A025                      TCGA-AG-A026 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AG-A02G                      TCGA-AG-A02N 
  "AMP PEAK 13(13Q12.13) MUTATED" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-AG-A02X                      TCGA-AG-A032 
"AMP PEAK 13(13Q12.13) WILD-TYPE"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AH-6544                      TCGA-AH-6547 
  "AMP PEAK 13(13Q12.13) MUTATED" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-AH-6643                      TCGA-AH-6644 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-AH-6897                      TCGA-AH-6903 
  "AMP PEAK 13(13Q12.13) MUTATED" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-BM-6198                      TCGA-CI-6619 
"AMP PEAK 13(13Q12.13) WILD-TYPE"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-CI-6620                      TCGA-CI-6622 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-CI-6623                      TCGA-CI-6624 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-CL-4957                      TCGA-CL-5917 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-CL-5918                      TCGA-DC-4745 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-DC-4749                      TCGA-DC-5337 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-DC-5869                      TCGA-DC-6154 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-DC-6155                      TCGA-DC-6156 
"AMP PEAK 13(13Q12.13) WILD-TYPE"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-DC-6157                      TCGA-DC-6158 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-DC-6160                      TCGA-DC-6681 
  "AMP PEAK 13(13Q12.13) MUTATED" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-DC-6682                      TCGA-DC-6683 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-DT-5265                      TCGA-DY-A0XA 
"AMP PEAK 13(13Q12.13) WILD-TYPE"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-DY-A1DC                      TCGA-DY-A1DD 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-DY-A1DE                      TCGA-DY-A1DF 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-DY-A1DG                      TCGA-DY-A1H8 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-EF-5830                      TCGA-EF-5831 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-EI-6506                      TCGA-EI-6507 
  "AMP PEAK 13(13Q12.13) MUTATED" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-EI-6508                      TCGA-EI-6509 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-EI-6510                      TCGA-EI-6511 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-EI-6512                      TCGA-EI-6513 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-EI-6514                      TCGA-EI-6881 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-EI-6882                      TCGA-EI-6883 
"AMP PEAK 13(13Q12.13) WILD-TYPE"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-EI-6884                      TCGA-EI-6885 
  "AMP PEAK 13(13Q12.13) MUTATED" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-EI-6917                      TCGA-EI-7002 
"AMP PEAK 13(13Q12.13) WILD-TYPE"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-EI-7004                      TCGA-F5-6465 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-F5-6571                      TCGA-F5-6702 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-F5-6810                      TCGA-F5-6811 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-F5-6812                      TCGA-F5-6813 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-F5-6814                      TCGA-F5-6861 
"AMP PEAK 13(13Q12.13) WILD-TYPE" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-F5-6863                      TCGA-F5-6864 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-G5-6233                      TCGA-G5-6235 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
                     TCGA-G5-6572                      TCGA-G5-6641 
  "AMP PEAK 13(13Q12.13) MUTATED"   "AMP PEAK 13(13Q12.13) MUTATED" 
[1] "hr="   "3e+08"
D13V2, continuous
                                 vv
clus                              STAGE I STAGE II STAGE IIA STAGE IIB
  AMP PEAK 13(13Q12.13) MUTATED        21        2        28         2
  AMP PEAK 13(13Q12.13) WILD-TYPE       9        6        10         0
                                 vv
clus                              STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  AMP PEAK 13(13Q12.13) MUTATED           2         4          6         20
  AMP PEAK 13(13Q12.13) WILD-TYPE         0         1          3          3
                                 vv
clus                              STAGE IIIC STAGE IV STAGE IVA
  AMP PEAK 13(13Q12.13) MUTATED           13       13         8
  AMP PEAK 13(13Q12.13) WILD-TYPE          1        4         1
D13V3, multiclass
                                 vv
clus                              T1 T2 T3 T4
  AMP PEAK 13(13Q12.13) MUTATED    7 19 82 14
  AMP PEAK 13(13Q12.13) WILD-TYPE  2 10 27  0
D13V4, multiclass
    clus
vv   AMP PEAK 13(13Q12.13) MUTATED AMP PEAK 13(13Q12.13) WILD-TYPE
  T1                             7                               2
  T2                            19                              10
  T3                            82                              27
  T4                            14                               0
                                 vv
clus                              N0 N1 N2
  AMP PEAK 13(13Q12.13) MUTATED   55 37 29
  AMP PEAK 13(13Q12.13) WILD-TYPE 28  8  3
D13V5, multiclass
    clus
vv   AMP PEAK 13(13Q12.13) MUTATED AMP PEAK 13(13Q12.13) WILD-TYPE
  N0                            55                              28
  N1                            37                               8
  N2                            29                               3
                                 vv
clus                              M0 M1 M1A MX
  AMP PEAK 13(13Q12.13) MUTATED   91 18   1 12
  AMP PEAK 13(13Q12.13) WILD-TYPE 32  4   1  1
D13V6, multiclass
     clus
vv    AMP PEAK 13(13Q12.13) MUTATED AMP PEAK 13(13Q12.13) WILD-TYPE
  M0                             91                              32
  M1                             18                               4
  M1A                             1                               1
  MX                             12                               1
D13V7, binary
                                 cls
clus                               0  1
  AMP PEAK 13(13Q12.13) MUTATED   55 68
  AMP PEAK 13(13Q12.13) WILD-TYPE 19 20
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 13(13Q12.13) MUTATED     55   68
  AMP PEAK 13(13Q12.13) WILD-TYPE   19   20
        clus
vv       AMP PEAK 13(13Q12.13) MUTATED AMP PEAK 13(13Q12.13) WILD-TYPE
  FEMALE                            55                              19
  MALE                              68                              20
D13V8, binary
                                 cls
clus                                0   1
  AMP PEAK 13(13Q12.13) MUTATED   114   5
  AMP PEAK 13(13Q12.13) WILD-TYPE  29   8
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 13(13Q12.13) MUTATED    114    5
  AMP PEAK 13(13Q12.13) WILD-TYPE   29    8
                                clus
vv                               AMP PEAK 13(13Q12.13) MUTATED
  RECTAL ADENOCARCINOMA                                    114
  RECTAL MUCINOUS ADENOCARCINOMA                             5
                                clus
vv                               AMP PEAK 13(13Q12.13) WILD-TYPE
  RECTAL ADENOCARCINOMA                                       29
  RECTAL MUCINOUS ADENOCARCINOMA                               8
D13V9, binary
                                 cls
clus                                0   1
  AMP PEAK 13(13Q12.13) MUTATED     4 119
  AMP PEAK 13(13Q12.13) WILD-TYPE   2  37
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 13(13Q12.13) MUTATED      4  119
  AMP PEAK 13(13Q12.13) WILD-TYPE    2   37
     clus
vv    AMP PEAK 13(13Q12.13) MUTATED AMP PEAK 13(13Q12.13) WILD-TYPE
  NO                              4                               2
  YES                           119                              37
                                 vv
clus                              R0 R1 R2 RX
  AMP PEAK 13(13Q12.13) MUTATED   88  2  9  2
  AMP PEAK 13(13Q12.13) WILD-TYPE 33  0  3  1
D13V10, multiclass
    clus
vv   AMP PEAK 13(13Q12.13) MUTATED AMP PEAK 13(13Q12.13) WILD-TYPE
  R0                            88                              33
  R1                             2                               0
  R2                             9                               3
  RX                             2                               1
D13V11, continuous

Clustering(14) Variable = AMP PEAK 14(13Q12.2) MUTATION ANALYSIS
D14V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 14(13Q12.2) MUTATED   88 13
  AMP PEAK 14(13Q12.2) WILD-TYPE 29  0
  AMP PEAK 14(13Q12.2) MUTATED AMP PEAK 14(13Q12.2) WILD-TYPE 
                           101                             29 
  AMP PEAK 14(13Q12.2) MUTATED AMP PEAK 14(13Q12.2) WILD-TYPE 
                            13                              0 
$`AMP PEAK 14(13Q12.2) MUTATED`
TCGA-AF-2687 TCGA-AF-2689 TCGA-AF-2690 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-2693 
       24.13        17.95        17.23        10.62        13.55        19.10 
TCGA-AF-3911 TCGA-AF-3913 TCGA-AF-4110 TCGA-AF-6136 TCGA-AF-6655 TCGA-AF-6672 
       25.02        10.39        14.50        15.35        11.67        10.39 
TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3586 TCGA-AG-3587 TCGA-AG-3605 
        1.02         1.02         2.01         1.02         1.02         0.99 
TCGA-AG-3727 TCGA-AG-3742 TCGA-AG-3883 TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3894 
        0.95         0.99         1.02         0.92         0.99         0.99 
TCGA-AG-3896 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-4022 
        1.02         1.02         1.02         1.02         1.02         0.99 
TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 
        6.02        25.94        23.01        17.03        15.91        13.02 
TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A023 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G 
        1.02        12.00        51.98        49.94         1.94        38.93 
TCGA-AG-A02X TCGA-AG-A032 TCGA-AH-6544 TCGA-AH-6643 TCGA-AH-6644 TCGA-AH-6897 
       40.96        38.01         0.49         0.69         0.72         4.60 
TCGA-CI-6619 TCGA-CI-6622 TCGA-CI-6623 TCGA-CI-6624 TCGA-CL-4957 TCGA-CL-5917 
        6.02         6.94         9.37         4.70        13.97        60.00 
TCGA-CL-5918 TCGA-DC-4745 TCGA-DC-4749 TCGA-DC-5337 TCGA-DC-5869 TCGA-DC-6154 
        7.99        10.98        11.01        15.02        12.99        12.00 
TCGA-DC-6156 TCGA-DC-6157 TCGA-DC-6158 TCGA-DC-6160 TCGA-DC-6682 TCGA-DC-6683 
       15.02        36.00         6.97        30.05        13.02        10.06 
TCGA-DY-A0XA TCGA-DY-A1DC TCGA-DY-A1DD TCGA-DY-A1DE TCGA-DY-A1DF TCGA-DY-A1DG 
      126.41        41.33        57.24       129.27        24.13        51.48 
TCGA-DY-A1H8 TCGA-EF-5830 TCGA-EF-5831 TCGA-EI-6506 TCGA-EI-6508 TCGA-EI-6509 
       32.58         0.49         2.40        20.55        20.91        17.00 
TCGA-EI-6510 TCGA-EI-6511 TCGA-EI-6512 TCGA-EI-6513 TCGA-EI-6514 TCGA-EI-6881 
       18.28        15.85        17.69        16.34        16.31        16.37 
TCGA-EI-6883 TCGA-EI-6884 TCGA-EI-7002 TCGA-EI-7004 TCGA-F5-6465 TCGA-F5-6571 
       11.51        10.78        11.97         8.45         3.39         0.85 
TCGA-F5-6702 TCGA-F5-6810 TCGA-F5-6811 TCGA-F5-6812 TCGA-F5-6813 TCGA-F5-6863 
        2.17         0.39         1.02         0.66         0.69         0.76 
TCGA-F5-6864 TCGA-G5-6233 TCGA-G5-6235 TCGA-G5-6572 TCGA-G5-6641 
        0.46        18.25        55.76        47.08        26.43 

$`AMP PEAK 14(13Q12.2) WILD-TYPE`
TCGA-AF-3400 TCGA-AF-5654 TCGA-AG-3575 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3731 
       12.72         8.45        12.00         0.99         7.96         1.02 
TCGA-AG-3878 TCGA-AG-3892 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A01J TCGA-AG-A01N 
        0.99         1.02        20.94        13.91         1.02        12.00 
TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A02N TCGA-AH-6547 TCGA-AH-6903 
       70.03        63.98        10.98        61.94         1.45         1.81 
TCGA-BM-6198 TCGA-CI-6620 TCGA-DC-6155 TCGA-DC-6681 TCGA-DT-5265 TCGA-EI-6507 
       10.19         6.02        14.01        12.95         5.29        19.96 
TCGA-EI-6882 TCGA-EI-6885 TCGA-EI-6917 TCGA-F5-6814 TCGA-F5-6861 
        8.61        13.61        17.46         0.53         1.08 

  AMP PEAK 14(13Q12.2) MUTATED AMP PEAK 14(13Q12.2) WILD-TYPE 
                          0.39                           0.53 
  AMP PEAK 14(13Q12.2) MUTATED AMP PEAK 14(13Q12.2) WILD-TYPE 
                        129.27                          70.03 
  AMP PEAK 14(13Q12.2) MUTATED AMP PEAK 14(13Q12.2) WILD-TYPE 
                         11.51                          10.19 
[1] "0.4 - 129.3 (11.5)" "0.5 - 70.0 (10.2)" 
                    TCGA-AF-2687                     TCGA-AF-2689 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AF-2690                     TCGA-AF-2691 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AF-2692                     TCGA-AF-2693 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"AMP PEAK 14(13Q12.2) WILD-TYPE"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AF-3913                     TCGA-AF-4110 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"AMP PEAK 14(13Q12.2) WILD-TYPE"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AF-6655                     TCGA-AF-6672 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AG-3575                     TCGA-AG-3581 
"AMP PEAK 14(13Q12.2) WILD-TYPE"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AG-3582                     TCGA-AG-3583 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AG-3586                     TCGA-AG-3587 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"AMP PEAK 14(13Q12.2) WILD-TYPE"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AG-3726                     TCGA-AG-3727 
"AMP PEAK 14(13Q12.2) WILD-TYPE"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"AMP PEAK 14(13Q12.2) WILD-TYPE"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"AMP PEAK 14(13Q12.2) WILD-TYPE"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AG-3887                     TCGA-AG-3892 
  "AMP PEAK 14(13Q12.2) MUTATED" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AG-3896                     TCGA-AG-3999 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AG-4001                     TCGA-AG-4007 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AG-4008                     TCGA-AG-4022 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"AMP PEAK 14(13Q12.2) WILD-TYPE" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AG-A014                     TCGA-AG-A015 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
  "AMP PEAK 14(13Q12.2) MUTATED" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
  "AMP PEAK 14(13Q12.2) MUTATED" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
"AMP PEAK 14(13Q12.2) WILD-TYPE" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"AMP PEAK 14(13Q12.2) WILD-TYPE"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AG-A025                     TCGA-AG-A026 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
  "AMP PEAK 14(13Q12.2) MUTATED" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AH-6544                     TCGA-AH-6547 
  "AMP PEAK 14(13Q12.2) MUTATED" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AH-6897                     TCGA-AH-6903 
  "AMP PEAK 14(13Q12.2) MUTATED" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
"AMP PEAK 14(13Q12.2) WILD-TYPE"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"AMP PEAK 14(13Q12.2) WILD-TYPE"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-CI-6623                     TCGA-CI-6624 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-CL-4957                     TCGA-CL-5917 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-CL-5918                     TCGA-DC-4745 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-DC-4749                     TCGA-DC-5337 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-DC-5869                     TCGA-DC-6154 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-DC-6155                     TCGA-DC-6156 
"AMP PEAK 14(13Q12.2) WILD-TYPE"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-DC-6157                     TCGA-DC-6158 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-DC-6160                     TCGA-DC-6681 
  "AMP PEAK 14(13Q12.2) MUTATED" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"AMP PEAK 14(13Q12.2) WILD-TYPE"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-EF-5830                     TCGA-EF-5831 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-EI-6506                     TCGA-EI-6507 
  "AMP PEAK 14(13Q12.2) MUTATED" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-EI-6510                     TCGA-EI-6511 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-EI-6512                     TCGA-EI-6513 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-EI-6514                     TCGA-EI-6881 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"AMP PEAK 14(13Q12.2) WILD-TYPE"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-EI-6884                     TCGA-EI-6885 
  "AMP PEAK 14(13Q12.2) MUTATED" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"AMP PEAK 14(13Q12.2) WILD-TYPE"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-EI-7004                     TCGA-F5-6465 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-F5-6571                     TCGA-F5-6702 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-F5-6810                     TCGA-F5-6811 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-F5-6812                     TCGA-F5-6813 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"AMP PEAK 14(13Q12.2) WILD-TYPE" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-G5-6233                     TCGA-G5-6235 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-G5-6572                     TCGA-G5-6641 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AF-2687                     TCGA-AF-2689 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AF-2690                     TCGA-AF-2691 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AF-2692                     TCGA-AF-2693 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"AMP PEAK 14(13Q12.2) WILD-TYPE"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AF-3913                     TCGA-AF-4110 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"AMP PEAK 14(13Q12.2) WILD-TYPE"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AF-6655                     TCGA-AF-6672 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AG-3575                     TCGA-AG-3581 
"AMP PEAK 14(13Q12.2) WILD-TYPE"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AG-3582                     TCGA-AG-3583 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AG-3586                     TCGA-AG-3587 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"AMP PEAK 14(13Q12.2) WILD-TYPE"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AG-3726                     TCGA-AG-3727 
"AMP PEAK 14(13Q12.2) WILD-TYPE"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"AMP PEAK 14(13Q12.2) WILD-TYPE"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"AMP PEAK 14(13Q12.2) WILD-TYPE"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AG-3887                     TCGA-AG-3892 
  "AMP PEAK 14(13Q12.2) MUTATED" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AG-3896                     TCGA-AG-3999 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AG-4001                     TCGA-AG-4007 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AG-4008                     TCGA-AG-4022 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"AMP PEAK 14(13Q12.2) WILD-TYPE" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AG-A014                     TCGA-AG-A015 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
  "AMP PEAK 14(13Q12.2) MUTATED" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
  "AMP PEAK 14(13Q12.2) MUTATED" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
"AMP PEAK 14(13Q12.2) WILD-TYPE" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"AMP PEAK 14(13Q12.2) WILD-TYPE"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AG-A025                     TCGA-AG-A026 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
  "AMP PEAK 14(13Q12.2) MUTATED" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AH-6544                     TCGA-AH-6547 
  "AMP PEAK 14(13Q12.2) MUTATED" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AH-6897                     TCGA-AH-6903 
  "AMP PEAK 14(13Q12.2) MUTATED" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
"AMP PEAK 14(13Q12.2) WILD-TYPE"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"AMP PEAK 14(13Q12.2) WILD-TYPE"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-CI-6623                     TCGA-CI-6624 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-CL-4957                     TCGA-CL-5917 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-CL-5918                     TCGA-DC-4745 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-DC-4749                     TCGA-DC-5337 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-DC-5869                     TCGA-DC-6154 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-DC-6155                     TCGA-DC-6156 
"AMP PEAK 14(13Q12.2) WILD-TYPE"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-DC-6157                     TCGA-DC-6158 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-DC-6160                     TCGA-DC-6681 
  "AMP PEAK 14(13Q12.2) MUTATED" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"AMP PEAK 14(13Q12.2) WILD-TYPE"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-EF-5830                     TCGA-EF-5831 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-EI-6506                     TCGA-EI-6507 
  "AMP PEAK 14(13Q12.2) MUTATED" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-EI-6510                     TCGA-EI-6511 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-EI-6512                     TCGA-EI-6513 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-EI-6514                     TCGA-EI-6881 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"AMP PEAK 14(13Q12.2) WILD-TYPE"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-EI-6884                     TCGA-EI-6885 
  "AMP PEAK 14(13Q12.2) MUTATED" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"AMP PEAK 14(13Q12.2) WILD-TYPE"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-EI-7004                     TCGA-F5-6465 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-F5-6571                     TCGA-F5-6702 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-F5-6810                     TCGA-F5-6811 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-F5-6812                     TCGA-F5-6813 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"AMP PEAK 14(13Q12.2) WILD-TYPE" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-G5-6233                     TCGA-G5-6235 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-G5-6572                     TCGA-G5-6641 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AF-2687                     TCGA-AF-2689 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AF-2690                     TCGA-AF-2691 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AF-2692                     TCGA-AF-2693 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"AMP PEAK 14(13Q12.2) WILD-TYPE"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AF-3913                     TCGA-AF-4110 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"AMP PEAK 14(13Q12.2) WILD-TYPE"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AF-6655                     TCGA-AF-6672 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AG-3575                     TCGA-AG-3581 
"AMP PEAK 14(13Q12.2) WILD-TYPE"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AG-3582                     TCGA-AG-3583 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AG-3586                     TCGA-AG-3587 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"AMP PEAK 14(13Q12.2) WILD-TYPE"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AG-3726                     TCGA-AG-3727 
"AMP PEAK 14(13Q12.2) WILD-TYPE"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"AMP PEAK 14(13Q12.2) WILD-TYPE"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"AMP PEAK 14(13Q12.2) WILD-TYPE"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AG-3887                     TCGA-AG-3892 
  "AMP PEAK 14(13Q12.2) MUTATED" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AG-3896                     TCGA-AG-3999 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AG-4001                     TCGA-AG-4007 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AG-4008                     TCGA-AG-4022 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"AMP PEAK 14(13Q12.2) WILD-TYPE" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AG-A014                     TCGA-AG-A015 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
  "AMP PEAK 14(13Q12.2) MUTATED" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
  "AMP PEAK 14(13Q12.2) MUTATED" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
"AMP PEAK 14(13Q12.2) WILD-TYPE" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"AMP PEAK 14(13Q12.2) WILD-TYPE"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AG-A025                     TCGA-AG-A026 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
  "AMP PEAK 14(13Q12.2) MUTATED" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AH-6544                     TCGA-AH-6547 
  "AMP PEAK 14(13Q12.2) MUTATED" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-AH-6897                     TCGA-AH-6903 
  "AMP PEAK 14(13Q12.2) MUTATED" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
"AMP PEAK 14(13Q12.2) WILD-TYPE"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"AMP PEAK 14(13Q12.2) WILD-TYPE"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-CI-6623                     TCGA-CI-6624 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-CL-4957                     TCGA-CL-5917 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-CL-5918                     TCGA-DC-4745 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-DC-4749                     TCGA-DC-5337 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-DC-5869                     TCGA-DC-6154 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-DC-6155                     TCGA-DC-6156 
"AMP PEAK 14(13Q12.2) WILD-TYPE"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-DC-6157                     TCGA-DC-6158 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-DC-6160                     TCGA-DC-6681 
  "AMP PEAK 14(13Q12.2) MUTATED" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"AMP PEAK 14(13Q12.2) WILD-TYPE"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-EF-5830                     TCGA-EF-5831 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-EI-6506                     TCGA-EI-6507 
  "AMP PEAK 14(13Q12.2) MUTATED" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-EI-6510                     TCGA-EI-6511 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-EI-6512                     TCGA-EI-6513 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-EI-6514                     TCGA-EI-6881 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"AMP PEAK 14(13Q12.2) WILD-TYPE"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-EI-6884                     TCGA-EI-6885 
  "AMP PEAK 14(13Q12.2) MUTATED" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"AMP PEAK 14(13Q12.2) WILD-TYPE"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-EI-7004                     TCGA-F5-6465 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-F5-6571                     TCGA-F5-6702 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-F5-6810                     TCGA-F5-6811 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-F5-6812                     TCGA-F5-6813 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"AMP PEAK 14(13Q12.2) WILD-TYPE" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-G5-6233                     TCGA-G5-6235 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
                    TCGA-G5-6572                     TCGA-G5-6641 
  "AMP PEAK 14(13Q12.2) MUTATED"   "AMP PEAK 14(13Q12.2) MUTATED" 
[1] "hr="     "2.9e+08"
D14V2, continuous
                                vv
clus                             STAGE I STAGE II STAGE IIA STAGE IIB STAGE IIC
  AMP PEAK 14(13Q12.2) MUTATED        21        2        28         2         2
  AMP PEAK 14(13Q12.2) WILD-TYPE       9        6        10         0         0
                                vv
clus                             STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  AMP PEAK 14(13Q12.2) MUTATED           4          6         20         13
  AMP PEAK 14(13Q12.2) WILD-TYPE         1          3          3          1
                                vv
clus                             STAGE IV STAGE IVA
  AMP PEAK 14(13Q12.2) MUTATED         13         7
  AMP PEAK 14(13Q12.2) WILD-TYPE        4         2
D14V3, multiclass
                                vv
clus                             T1 T2 T3 T4
  AMP PEAK 14(13Q12.2) MUTATED    7 19 81 14
  AMP PEAK 14(13Q12.2) WILD-TYPE  2 10 28  0
D14V4, multiclass
    clus
vv   AMP PEAK 14(13Q12.2) MUTATED AMP PEAK 14(13Q12.2) WILD-TYPE
  T1                            7                              2
  T2                           19                             10
  T3                           81                             28
  T4                           14                              0
                                vv
clus                             N0 N1 N2
  AMP PEAK 14(13Q12.2) MUTATED   55 36 29
  AMP PEAK 14(13Q12.2) WILD-TYPE 28  9  3
D14V5, multiclass
    clus
vv   AMP PEAK 14(13Q12.2) MUTATED AMP PEAK 14(13Q12.2) WILD-TYPE
  N0                           55                             28
  N1                           36                              9
  N2                           29                              3
                                vv
clus                             M0 M1 M1A MX
  AMP PEAK 14(13Q12.2) MUTATED   91 17   1 12
  AMP PEAK 14(13Q12.2) WILD-TYPE 32  5   1  1
D14V6, multiclass
     clus
vv    AMP PEAK 14(13Q12.2) MUTATED AMP PEAK 14(13Q12.2) WILD-TYPE
  M0                            91                             32
  M1                            17                              5
  M1A                            1                              1
  MX                            12                              1
D14V7, binary
                                cls
clus                              0  1
  AMP PEAK 14(13Q12.2) MUTATED   53 69
  AMP PEAK 14(13Q12.2) WILD-TYPE 21 19
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 14(13Q12.2) MUTATED     53   69
  AMP PEAK 14(13Q12.2) WILD-TYPE   21   19
        clus
vv       AMP PEAK 14(13Q12.2) MUTATED AMP PEAK 14(13Q12.2) WILD-TYPE
  FEMALE                           53                             21
  MALE                             69                             19
D14V8, binary
                                cls
clus                               0   1
  AMP PEAK 14(13Q12.2) MUTATED   113   5
  AMP PEAK 14(13Q12.2) WILD-TYPE  30   8
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 14(13Q12.2) MUTATED    113    5
  AMP PEAK 14(13Q12.2) WILD-TYPE   30    8
                                clus
vv                               AMP PEAK 14(13Q12.2) MUTATED
  RECTAL ADENOCARCINOMA                                   113
  RECTAL MUCINOUS ADENOCARCINOMA                            5
                                clus
vv                               AMP PEAK 14(13Q12.2) WILD-TYPE
  RECTAL ADENOCARCINOMA                                      30
  RECTAL MUCINOUS ADENOCARCINOMA                              8
D14V9, binary
                                cls
clus                               0   1
  AMP PEAK 14(13Q12.2) MUTATED     4 118
  AMP PEAK 14(13Q12.2) WILD-TYPE   2  38
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 14(13Q12.2) MUTATED      4  118
  AMP PEAK 14(13Q12.2) WILD-TYPE    2   38
     clus
vv    AMP PEAK 14(13Q12.2) MUTATED AMP PEAK 14(13Q12.2) WILD-TYPE
  NO                             4                              2
  YES                          118                             38
                                vv
clus                             R0 R1 R2 RX
  AMP PEAK 14(13Q12.2) MUTATED   88  2  9  2
  AMP PEAK 14(13Q12.2) WILD-TYPE 33  0  3  1
D14V10, multiclass
    clus
vv   AMP PEAK 14(13Q12.2) MUTATED AMP PEAK 14(13Q12.2) WILD-TYPE
  R0                           88                             33
  R1                            2                              0
  R2                            9                              3
  RX                            2                              1
D14V11, continuous

Clustering(15) Variable = AMP PEAK 15(13Q22.1) MUTATION ANALYSIS
D15V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 15(13Q22.1) MUTATED   85 13
  AMP PEAK 15(13Q22.1) WILD-TYPE 32  0
  AMP PEAK 15(13Q22.1) MUTATED AMP PEAK 15(13Q22.1) WILD-TYPE 
                            98                             32 
  AMP PEAK 15(13Q22.1) MUTATED AMP PEAK 15(13Q22.1) WILD-TYPE 
                            13                              0 
$`AMP PEAK 15(13Q22.1) MUTATED`
TCGA-AF-2687 TCGA-AF-2689 TCGA-AF-2690 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-2693 
       24.13        17.95        17.23        10.62        13.55        19.10 
TCGA-AF-3911 TCGA-AF-3913 TCGA-AF-4110 TCGA-AF-6136 TCGA-AF-6655 TCGA-AF-6672 
       25.02        10.39        14.50        15.35        11.67        10.39 
TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3586 TCGA-AG-3587 TCGA-AG-3605 
        1.02         1.02         2.01         1.02         1.02         0.99 
TCGA-AG-3727 TCGA-AG-3742 TCGA-AG-3883 TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3894 
        0.95         0.99         1.02         0.92         0.99         0.99 
TCGA-AG-3896 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-4022 
        1.02         1.02         1.02         1.02         1.02         0.99 
TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 
        6.02        25.94        23.01        15.91        13.02         1.02 
TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A023 TCGA-AG-A025 TCGA-AG-A026 
       12.00        70.03        63.98        51.98        49.94         1.94 
TCGA-AG-A02G TCGA-AG-A032 TCGA-AH-6544 TCGA-AH-6643 TCGA-AH-6644 TCGA-AH-6897 
       38.93        38.01         0.49         0.69         0.72         4.60 
TCGA-CI-6619 TCGA-CI-6622 TCGA-CI-6623 TCGA-CI-6624 TCGA-CL-4957 TCGA-CL-5917 
        6.02         6.94         9.37         4.70        13.97        60.00 
TCGA-CL-5918 TCGA-DC-4745 TCGA-DC-4749 TCGA-DC-5337 TCGA-DC-5869 TCGA-DC-6154 
        7.99        10.98        11.01        15.02        12.99        12.00 
TCGA-DC-6156 TCGA-DC-6157 TCGA-DC-6158 TCGA-DC-6160 TCGA-DC-6682 TCGA-DC-6683 
       15.02        36.00         6.97        30.05        13.02        10.06 
TCGA-DT-5265 TCGA-DY-A0XA TCGA-DY-A1DC TCGA-DY-A1DD TCGA-DY-A1DE TCGA-DY-A1DF 
        5.29       126.41        41.33        57.24       129.27        24.13 
TCGA-DY-A1DG TCGA-DY-A1H8 TCGA-EF-5830 TCGA-EI-6506 TCGA-EI-6509 TCGA-EI-6510 
       51.48        32.58         0.49        20.55        17.00        18.28 
TCGA-EI-6511 TCGA-EI-6512 TCGA-EI-6513 TCGA-EI-6514 TCGA-EI-6881 TCGA-EI-6883 
       15.85        17.69        16.34        16.31        16.37        11.51 
TCGA-EI-6884 TCGA-EI-7002 TCGA-F5-6465 TCGA-F5-6571 TCGA-F5-6702 TCGA-F5-6810 
       10.78        11.97         3.39         0.85         2.17         0.39 
TCGA-F5-6811 TCGA-F5-6812 TCGA-F5-6813 TCGA-F5-6863 TCGA-G5-6233 TCGA-G5-6235 
        1.02         0.66         0.69         0.76        18.25        55.76 
TCGA-G5-6572 TCGA-G5-6641 
       47.08        26.43 

$`AMP PEAK 15(13Q22.1) WILD-TYPE`
TCGA-AF-3400 TCGA-AF-5654 TCGA-AG-3575 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3731 
       12.72         8.45        12.00         0.99         7.96         1.02 
TCGA-AG-3878 TCGA-AG-3892 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A011 TCGA-AG-A01J 
        0.99         1.02        20.94        13.91        17.03         1.02 
TCGA-AG-A01N TCGA-AG-A020 TCGA-AG-A02N TCGA-AG-A02X TCGA-AH-6547 TCGA-AH-6903 
       12.00        10.98        61.94        40.96         1.45         1.81 
TCGA-BM-6198 TCGA-CI-6620 TCGA-DC-6155 TCGA-DC-6681 TCGA-EF-5831 TCGA-EI-6507 
       10.19         6.02        14.01        12.95         2.40        19.96 
TCGA-EI-6508 TCGA-EI-6882 TCGA-EI-6885 TCGA-EI-6917 TCGA-EI-7004 TCGA-F5-6814 
       20.91         8.61        13.61        17.46         8.45         0.53 
TCGA-F5-6861 TCGA-F5-6864 
        1.08         0.46 

  AMP PEAK 15(13Q22.1) MUTATED AMP PEAK 15(13Q22.1) WILD-TYPE 
                          0.39                           0.46 
  AMP PEAK 15(13Q22.1) MUTATED AMP PEAK 15(13Q22.1) WILD-TYPE 
                        129.27                          61.94 
  AMP PEAK 15(13Q22.1) MUTATED AMP PEAK 15(13Q22.1) WILD-TYPE 
                         11.59                           9.40 
[1] "0.4 - 129.3 (11.6)" "0.5 - 61.9 (9.4)"  
                    TCGA-AF-2687                     TCGA-AF-2689 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AF-2690                     TCGA-AF-2691 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AF-2692                     TCGA-AF-2693 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"AMP PEAK 15(13Q22.1) WILD-TYPE"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AF-3913                     TCGA-AF-4110 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"AMP PEAK 15(13Q22.1) WILD-TYPE"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AF-6655                     TCGA-AF-6672 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AG-3575                     TCGA-AG-3581 
"AMP PEAK 15(13Q22.1) WILD-TYPE"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AG-3582                     TCGA-AG-3583 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AG-3586                     TCGA-AG-3587 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"AMP PEAK 15(13Q22.1) WILD-TYPE"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AG-3726                     TCGA-AG-3727 
"AMP PEAK 15(13Q22.1) WILD-TYPE"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"AMP PEAK 15(13Q22.1) WILD-TYPE"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"AMP PEAK 15(13Q22.1) WILD-TYPE"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AG-3887                     TCGA-AG-3892 
  "AMP PEAK 15(13Q22.1) MUTATED" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AG-3896                     TCGA-AG-3999 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AG-4001                     TCGA-AG-4007 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AG-4008                     TCGA-AG-4022 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"AMP PEAK 15(13Q22.1) WILD-TYPE" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
  "AMP PEAK 15(13Q22.1) MUTATED" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
  "AMP PEAK 15(13Q22.1) MUTATED" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
  "AMP PEAK 15(13Q22.1) MUTATED" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"AMP PEAK 15(13Q22.1) WILD-TYPE"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AG-A025                     TCGA-AG-A026 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
  "AMP PEAK 15(13Q22.1) MUTATED" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
"AMP PEAK 15(13Q22.1) WILD-TYPE"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AH-6544                     TCGA-AH-6547 
  "AMP PEAK 15(13Q22.1) MUTATED" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AH-6897                     TCGA-AH-6903 
  "AMP PEAK 15(13Q22.1) MUTATED" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
"AMP PEAK 15(13Q22.1) WILD-TYPE"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"AMP PEAK 15(13Q22.1) WILD-TYPE"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-CI-6623                     TCGA-CI-6624 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-CL-4957                     TCGA-CL-5917 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-CL-5918                     TCGA-DC-4745 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-DC-4749                     TCGA-DC-5337 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-DC-5869                     TCGA-DC-6154 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-DC-6155                     TCGA-DC-6156 
"AMP PEAK 15(13Q22.1) WILD-TYPE"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-DC-6157                     TCGA-DC-6158 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-DC-6160                     TCGA-DC-6681 
  "AMP PEAK 15(13Q22.1) MUTATED" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-EF-5830                     TCGA-EF-5831 
  "AMP PEAK 15(13Q22.1) MUTATED" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-EI-6506                     TCGA-EI-6507 
  "AMP PEAK 15(13Q22.1) MUTATED" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"AMP PEAK 15(13Q22.1) WILD-TYPE"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-EI-6510                     TCGA-EI-6511 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-EI-6512                     TCGA-EI-6513 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-EI-6514                     TCGA-EI-6881 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"AMP PEAK 15(13Q22.1) WILD-TYPE"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-EI-6884                     TCGA-EI-6885 
  "AMP PEAK 15(13Q22.1) MUTATED" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"AMP PEAK 15(13Q22.1) WILD-TYPE"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-EI-7004                     TCGA-F5-6465 
"AMP PEAK 15(13Q22.1) WILD-TYPE"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-F5-6571                     TCGA-F5-6702 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-F5-6810                     TCGA-F5-6811 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-F5-6812                     TCGA-F5-6813 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"AMP PEAK 15(13Q22.1) WILD-TYPE" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
  "AMP PEAK 15(13Q22.1) MUTATED" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-G5-6233                     TCGA-G5-6235 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-G5-6572                     TCGA-G5-6641 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AF-2687                     TCGA-AF-2689 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AF-2690                     TCGA-AF-2691 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AF-2692                     TCGA-AF-2693 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"AMP PEAK 15(13Q22.1) WILD-TYPE"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AF-3913                     TCGA-AF-4110 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"AMP PEAK 15(13Q22.1) WILD-TYPE"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AF-6655                     TCGA-AF-6672 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AG-3575                     TCGA-AG-3581 
"AMP PEAK 15(13Q22.1) WILD-TYPE"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AG-3582                     TCGA-AG-3583 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AG-3586                     TCGA-AG-3587 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"AMP PEAK 15(13Q22.1) WILD-TYPE"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AG-3726                     TCGA-AG-3727 
"AMP PEAK 15(13Q22.1) WILD-TYPE"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"AMP PEAK 15(13Q22.1) WILD-TYPE"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"AMP PEAK 15(13Q22.1) WILD-TYPE"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AG-3887                     TCGA-AG-3892 
  "AMP PEAK 15(13Q22.1) MUTATED" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AG-3896                     TCGA-AG-3999 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AG-4001                     TCGA-AG-4007 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AG-4008                     TCGA-AG-4022 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"AMP PEAK 15(13Q22.1) WILD-TYPE" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
  "AMP PEAK 15(13Q22.1) MUTATED" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
  "AMP PEAK 15(13Q22.1) MUTATED" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
  "AMP PEAK 15(13Q22.1) MUTATED" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"AMP PEAK 15(13Q22.1) WILD-TYPE"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AG-A025                     TCGA-AG-A026 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
  "AMP PEAK 15(13Q22.1) MUTATED" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
"AMP PEAK 15(13Q22.1) WILD-TYPE"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AH-6544                     TCGA-AH-6547 
  "AMP PEAK 15(13Q22.1) MUTATED" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AH-6897                     TCGA-AH-6903 
  "AMP PEAK 15(13Q22.1) MUTATED" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
"AMP PEAK 15(13Q22.1) WILD-TYPE"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"AMP PEAK 15(13Q22.1) WILD-TYPE"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-CI-6623                     TCGA-CI-6624 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-CL-4957                     TCGA-CL-5917 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-CL-5918                     TCGA-DC-4745 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-DC-4749                     TCGA-DC-5337 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-DC-5869                     TCGA-DC-6154 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-DC-6155                     TCGA-DC-6156 
"AMP PEAK 15(13Q22.1) WILD-TYPE"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-DC-6157                     TCGA-DC-6158 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-DC-6160                     TCGA-DC-6681 
  "AMP PEAK 15(13Q22.1) MUTATED" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-EF-5830                     TCGA-EF-5831 
  "AMP PEAK 15(13Q22.1) MUTATED" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-EI-6506                     TCGA-EI-6507 
  "AMP PEAK 15(13Q22.1) MUTATED" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"AMP PEAK 15(13Q22.1) WILD-TYPE"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-EI-6510                     TCGA-EI-6511 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-EI-6512                     TCGA-EI-6513 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-EI-6514                     TCGA-EI-6881 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"AMP PEAK 15(13Q22.1) WILD-TYPE"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-EI-6884                     TCGA-EI-6885 
  "AMP PEAK 15(13Q22.1) MUTATED" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"AMP PEAK 15(13Q22.1) WILD-TYPE"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-EI-7004                     TCGA-F5-6465 
"AMP PEAK 15(13Q22.1) WILD-TYPE"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-F5-6571                     TCGA-F5-6702 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-F5-6810                     TCGA-F5-6811 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-F5-6812                     TCGA-F5-6813 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"AMP PEAK 15(13Q22.1) WILD-TYPE" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
  "AMP PEAK 15(13Q22.1) MUTATED" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-G5-6233                     TCGA-G5-6235 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-G5-6572                     TCGA-G5-6641 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AF-2687                     TCGA-AF-2689 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AF-2690                     TCGA-AF-2691 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AF-2692                     TCGA-AF-2693 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"AMP PEAK 15(13Q22.1) WILD-TYPE"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AF-3913                     TCGA-AF-4110 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"AMP PEAK 15(13Q22.1) WILD-TYPE"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AF-6655                     TCGA-AF-6672 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AG-3575                     TCGA-AG-3581 
"AMP PEAK 15(13Q22.1) WILD-TYPE"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AG-3582                     TCGA-AG-3583 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AG-3586                     TCGA-AG-3587 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"AMP PEAK 15(13Q22.1) WILD-TYPE"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AG-3726                     TCGA-AG-3727 
"AMP PEAK 15(13Q22.1) WILD-TYPE"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"AMP PEAK 15(13Q22.1) WILD-TYPE"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"AMP PEAK 15(13Q22.1) WILD-TYPE"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AG-3887                     TCGA-AG-3892 
  "AMP PEAK 15(13Q22.1) MUTATED" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AG-3896                     TCGA-AG-3999 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AG-4001                     TCGA-AG-4007 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AG-4008                     TCGA-AG-4022 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"AMP PEAK 15(13Q22.1) WILD-TYPE" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
  "AMP PEAK 15(13Q22.1) MUTATED" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
  "AMP PEAK 15(13Q22.1) MUTATED" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
  "AMP PEAK 15(13Q22.1) MUTATED" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"AMP PEAK 15(13Q22.1) WILD-TYPE"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AG-A025                     TCGA-AG-A026 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
  "AMP PEAK 15(13Q22.1) MUTATED" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
"AMP PEAK 15(13Q22.1) WILD-TYPE"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AH-6544                     TCGA-AH-6547 
  "AMP PEAK 15(13Q22.1) MUTATED" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-AH-6897                     TCGA-AH-6903 
  "AMP PEAK 15(13Q22.1) MUTATED" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
"AMP PEAK 15(13Q22.1) WILD-TYPE"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"AMP PEAK 15(13Q22.1) WILD-TYPE"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-CI-6623                     TCGA-CI-6624 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-CL-4957                     TCGA-CL-5917 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-CL-5918                     TCGA-DC-4745 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-DC-4749                     TCGA-DC-5337 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-DC-5869                     TCGA-DC-6154 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-DC-6155                     TCGA-DC-6156 
"AMP PEAK 15(13Q22.1) WILD-TYPE"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-DC-6157                     TCGA-DC-6158 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-DC-6160                     TCGA-DC-6681 
  "AMP PEAK 15(13Q22.1) MUTATED" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-EF-5830                     TCGA-EF-5831 
  "AMP PEAK 15(13Q22.1) MUTATED" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-EI-6506                     TCGA-EI-6507 
  "AMP PEAK 15(13Q22.1) MUTATED" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"AMP PEAK 15(13Q22.1) WILD-TYPE"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-EI-6510                     TCGA-EI-6511 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-EI-6512                     TCGA-EI-6513 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-EI-6514                     TCGA-EI-6881 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"AMP PEAK 15(13Q22.1) WILD-TYPE"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-EI-6884                     TCGA-EI-6885 
  "AMP PEAK 15(13Q22.1) MUTATED" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"AMP PEAK 15(13Q22.1) WILD-TYPE"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-EI-7004                     TCGA-F5-6465 
"AMP PEAK 15(13Q22.1) WILD-TYPE"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-F5-6571                     TCGA-F5-6702 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-F5-6810                     TCGA-F5-6811 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-F5-6812                     TCGA-F5-6813 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"AMP PEAK 15(13Q22.1) WILD-TYPE" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
  "AMP PEAK 15(13Q22.1) MUTATED" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-G5-6233                     TCGA-G5-6235 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
                    TCGA-G5-6572                     TCGA-G5-6641 
  "AMP PEAK 15(13Q22.1) MUTATED"   "AMP PEAK 15(13Q22.1) MUTATED" 
[1] "hr="     "2.4e+08"
D15V2, continuous
                                vv
clus                             STAGE I STAGE II STAGE IIA STAGE IIB STAGE IIC
  AMP PEAK 15(13Q22.1) MUTATED        20        5        25         2         2
  AMP PEAK 15(13Q22.1) WILD-TYPE      10        3        13         0         0
                                vv
clus                             STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  AMP PEAK 15(13Q22.1) MUTATED           4          6         19         12
  AMP PEAK 15(13Q22.1) WILD-TYPE         1          3          4          2
                                vv
clus                             STAGE IV STAGE IVA
  AMP PEAK 15(13Q22.1) MUTATED         12         6
  AMP PEAK 15(13Q22.1) WILD-TYPE        5         3
D15V3, multiclass
                                vv
clus                             T1 T2 T3 T4
  AMP PEAK 15(13Q22.1) MUTATED    7 18 78 13
  AMP PEAK 15(13Q22.1) WILD-TYPE  2 11 31  1
D15V4, multiclass
    clus
vv   AMP PEAK 15(13Q22.1) MUTATED AMP PEAK 15(13Q22.1) WILD-TYPE
  T1                            7                              2
  T2                           18                             11
  T3                           78                             31
  T4                           13                              1
                                vv
clus                             N0 N1 N2
  AMP PEAK 15(13Q22.1) MUTATED   54 35 26
  AMP PEAK 15(13Q22.1) WILD-TYPE 29 10  6
D15V5, multiclass
    clus
vv   AMP PEAK 15(13Q22.1) MUTATED AMP PEAK 15(13Q22.1) WILD-TYPE
  N0                           54                             29
  N1                           35                             10
  N2                           26                              6
                                vv
clus                             M0 M1 M1A MX
  AMP PEAK 15(13Q22.1) MUTATED   87 16   1 12
  AMP PEAK 15(13Q22.1) WILD-TYPE 36  6   1  1
D15V6, multiclass
     clus
vv    AMP PEAK 15(13Q22.1) MUTATED AMP PEAK 15(13Q22.1) WILD-TYPE
  M0                            87                             36
  M1                            16                              6
  M1A                            1                              1
  MX                            12                              1
D15V7, binary
                                cls
clus                              0  1
  AMP PEAK 15(13Q22.1) MUTATED   51 66
  AMP PEAK 15(13Q22.1) WILD-TYPE 23 22
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 15(13Q22.1) MUTATED     51   66
  AMP PEAK 15(13Q22.1) WILD-TYPE   23   22
        clus
vv       AMP PEAK 15(13Q22.1) MUTATED AMP PEAK 15(13Q22.1) WILD-TYPE
  FEMALE                           51                             23
  MALE                             66                             22
D15V8, binary
                                cls
clus                               0   1
  AMP PEAK 15(13Q22.1) MUTATED   109   4
  AMP PEAK 15(13Q22.1) WILD-TYPE  34   9
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 15(13Q22.1) MUTATED    109    4
  AMP PEAK 15(13Q22.1) WILD-TYPE   34    9
                                clus
vv                               AMP PEAK 15(13Q22.1) MUTATED
  RECTAL ADENOCARCINOMA                                   109
  RECTAL MUCINOUS ADENOCARCINOMA                            4
                                clus
vv                               AMP PEAK 15(13Q22.1) WILD-TYPE
  RECTAL ADENOCARCINOMA                                      34
  RECTAL MUCINOUS ADENOCARCINOMA                              9
D15V9, binary
                                cls
clus                               0   1
  AMP PEAK 15(13Q22.1) MUTATED     4 113
  AMP PEAK 15(13Q22.1) WILD-TYPE   2  43
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 15(13Q22.1) MUTATED      4  113
  AMP PEAK 15(13Q22.1) WILD-TYPE    2   43
     clus
vv    AMP PEAK 15(13Q22.1) MUTATED AMP PEAK 15(13Q22.1) WILD-TYPE
  NO                             4                              2
  YES                          113                             43
                                vv
clus                             R0 R1 R2 RX
  AMP PEAK 15(13Q22.1) MUTATED   83  2  8  3
  AMP PEAK 15(13Q22.1) WILD-TYPE 38  0  4  0
D15V10, multiclass
    clus
vv   AMP PEAK 15(13Q22.1) MUTATED AMP PEAK 15(13Q22.1) WILD-TYPE
  R0                           83                             38
  R1                            2                              0
  R2                            8                              4
  RX                            3                              0
D15V11, continuous

Clustering(16) Variable = AMP PEAK 16(15Q26.1) MUTATION ANALYSIS
D16V1, survival
                                sevent
clus2                              0   1
  AMP PEAK 16(15Q26.1) MUTATED     9   1
  AMP PEAK 16(15Q26.1) WILD-TYPE 108  12
  AMP PEAK 16(15Q26.1) MUTATED AMP PEAK 16(15Q26.1) WILD-TYPE 
                            10                            120 
  AMP PEAK 16(15Q26.1) MUTATED AMP PEAK 16(15Q26.1) WILD-TYPE 
                             1                             12 
$`AMP PEAK 16(15Q26.1) MUTATED`
TCGA-AF-3400 TCGA-AG-3587 TCGA-AG-A01W TCGA-AH-6643 TCGA-BM-6198 TCGA-CI-6623 
       12.72         1.02        70.03         0.69        10.19         9.37 
TCGA-CL-5918 TCGA-DY-A1DC TCGA-EI-7004 TCGA-F5-6864 
        7.99        41.33         8.45         0.46 

$`AMP PEAK 16(15Q26.1) WILD-TYPE`
TCGA-AF-2687 TCGA-AF-2689 TCGA-AF-2690 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-2693 
       24.13        17.95        17.23        10.62        13.55        19.10 
TCGA-AF-3911 TCGA-AF-3913 TCGA-AF-4110 TCGA-AF-5654 TCGA-AF-6136 TCGA-AF-6655 
       25.02        10.39        14.50         8.45        15.35        11.67 
TCGA-AF-6672 TCGA-AG-3575 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3586 
       10.39        12.00         1.02         1.02         2.01         1.02 
TCGA-AG-3599 TCGA-AG-3605 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3731 TCGA-AG-3742 
        0.99         0.99         7.96         0.95         1.02         0.99 
TCGA-AG-3878 TCGA-AG-3883 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 
        0.99         1.02         0.92         1.02         0.99         0.99 
TCGA-AG-3896 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-4022 
        1.02         1.02         1.02         1.02         1.02         0.99 
TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 
       20.94        13.91         6.02        25.94        23.01        17.03 
TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01J TCGA-AG-A01L TCGA-AG-A01N 
       15.91        13.02         1.02         1.02        12.00        12.00 
TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A023 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G 
       63.98        10.98        51.98        49.94         1.94        38.93 
TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AH-6544 TCGA-AH-6547 TCGA-AH-6644 
       61.94        40.96        38.01         0.49         1.45         0.72 
TCGA-AH-6897 TCGA-AH-6903 TCGA-CI-6619 TCGA-CI-6620 TCGA-CI-6622 TCGA-CI-6624 
        4.60         1.81         6.02         6.02         6.94         4.70 
TCGA-CL-4957 TCGA-CL-5917 TCGA-DC-4745 TCGA-DC-4749 TCGA-DC-5337 TCGA-DC-5869 
       13.97        60.00        10.98        11.01        15.02        12.99 
TCGA-DC-6154 TCGA-DC-6155 TCGA-DC-6156 TCGA-DC-6157 TCGA-DC-6158 TCGA-DC-6160 
       12.00        14.01        15.02        36.00         6.97        30.05 
TCGA-DC-6681 TCGA-DC-6682 TCGA-DC-6683 TCGA-DT-5265 TCGA-DY-A0XA TCGA-DY-A1DD 
       12.95        13.02        10.06         5.29       126.41        57.24 
TCGA-DY-A1DE TCGA-DY-A1DF TCGA-DY-A1DG TCGA-DY-A1H8 TCGA-EF-5830 TCGA-EF-5831 
      129.27        24.13        51.48        32.58         0.49         2.40 
TCGA-EI-6506 TCGA-EI-6507 TCGA-EI-6508 TCGA-EI-6509 TCGA-EI-6510 TCGA-EI-6511 
       20.55        19.96        20.91        17.00        18.28        15.85 
TCGA-EI-6512 TCGA-EI-6513 TCGA-EI-6514 TCGA-EI-6881 TCGA-EI-6882 TCGA-EI-6883 
       17.69        16.34        16.31        16.37         8.61        11.51 
TCGA-EI-6884 TCGA-EI-6885 TCGA-EI-6917 TCGA-EI-7002 TCGA-F5-6465 TCGA-F5-6571 
       10.78        13.61        17.46        11.97         3.39         0.85 
TCGA-F5-6702 TCGA-F5-6810 TCGA-F5-6811 TCGA-F5-6812 TCGA-F5-6813 TCGA-F5-6814 
        2.17         0.39         1.02         0.66         0.69         0.53 
TCGA-F5-6861 TCGA-F5-6863 TCGA-G5-6233 TCGA-G5-6235 TCGA-G5-6572 TCGA-G5-6641 
        1.08         0.76        18.25        55.76        47.08        26.43 

  AMP PEAK 16(15Q26.1) MUTATED AMP PEAK 16(15Q26.1) WILD-TYPE 
                          0.46                           0.39 
  AMP PEAK 16(15Q26.1) MUTATED AMP PEAK 16(15Q26.1) WILD-TYPE 
                         70.03                         129.27 
  AMP PEAK 16(15Q26.1) MUTATED AMP PEAK 16(15Q26.1) WILD-TYPE 
                          8.91                          11.59 
[1] "0.5 - 70.0 (8.9)"   "0.4 - 129.3 (11.6)"
                    TCGA-AF-2687                     TCGA-AF-2689 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
  "AMP PEAK 16(15Q26.1) MUTATED" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-3575                     TCGA-AG-3581 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-3582                     TCGA-AG-3583 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"AMP PEAK 16(15Q26.1) WILD-TYPE"   "AMP PEAK 16(15Q26.1) MUTATED" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-4001                     TCGA-AG-4007 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-4008                     TCGA-AG-4022 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
  "AMP PEAK 16(15Q26.1) MUTATED" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AH-6544                     TCGA-AH-6547 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
  "AMP PEAK 16(15Q26.1) MUTATED" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AH-6897                     TCGA-AH-6903 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
  "AMP PEAK 16(15Q26.1) MUTATED" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
  "AMP PEAK 16(15Q26.1) MUTATED" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-CL-4957                     TCGA-CL-5917 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-CL-5918                     TCGA-DC-4745 
  "AMP PEAK 16(15Q26.1) MUTATED" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-DC-4749                     TCGA-DC-5337 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-DC-6155                     TCGA-DC-6156 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-DC-6157                     TCGA-DC-6158 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-DC-6160                     TCGA-DC-6681 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
  "AMP PEAK 16(15Q26.1) MUTATED" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-EF-5830                     TCGA-EF-5831 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-EI-6506                     TCGA-EI-6507 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-EI-6512                     TCGA-EI-6513 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-EI-6514                     TCGA-EI-6881 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-EI-6884                     TCGA-EI-6885 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-EI-7004                     TCGA-F5-6465 
  "AMP PEAK 16(15Q26.1) MUTATED" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-F5-6571                     TCGA-F5-6702 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-F5-6810                     TCGA-F5-6811 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-F5-6812                     TCGA-F5-6813 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
"AMP PEAK 16(15Q26.1) WILD-TYPE"   "AMP PEAK 16(15Q26.1) MUTATED" 
                    TCGA-G5-6233                     TCGA-G5-6235 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
  "AMP PEAK 16(15Q26.1) MUTATED" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-3575                     TCGA-AG-3581 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-3582                     TCGA-AG-3583 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"AMP PEAK 16(15Q26.1) WILD-TYPE"   "AMP PEAK 16(15Q26.1) MUTATED" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-4001                     TCGA-AG-4007 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-4008                     TCGA-AG-4022 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
  "AMP PEAK 16(15Q26.1) MUTATED" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AH-6544                     TCGA-AH-6547 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
  "AMP PEAK 16(15Q26.1) MUTATED" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AH-6897                     TCGA-AH-6903 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
  "AMP PEAK 16(15Q26.1) MUTATED" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
  "AMP PEAK 16(15Q26.1) MUTATED" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-CL-4957                     TCGA-CL-5917 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-CL-5918                     TCGA-DC-4745 
  "AMP PEAK 16(15Q26.1) MUTATED" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-DC-4749                     TCGA-DC-5337 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-DC-6155                     TCGA-DC-6156 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-DC-6157                     TCGA-DC-6158 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-DC-6160                     TCGA-DC-6681 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
  "AMP PEAK 16(15Q26.1) MUTATED" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-EF-5830                     TCGA-EF-5831 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-EI-6506                     TCGA-EI-6507 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-EI-6512                     TCGA-EI-6513 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-EI-6514                     TCGA-EI-6881 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-EI-6884                     TCGA-EI-6885 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-EI-7004                     TCGA-F5-6465 
  "AMP PEAK 16(15Q26.1) MUTATED" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-F5-6571                     TCGA-F5-6702 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-F5-6810                     TCGA-F5-6811 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-F5-6812                     TCGA-F5-6813 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
"AMP PEAK 16(15Q26.1) WILD-TYPE"   "AMP PEAK 16(15Q26.1) MUTATED" 
                    TCGA-G5-6233                     TCGA-G5-6235 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
  "AMP PEAK 16(15Q26.1) MUTATED" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-3575                     TCGA-AG-3581 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-3582                     TCGA-AG-3583 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"AMP PEAK 16(15Q26.1) WILD-TYPE"   "AMP PEAK 16(15Q26.1) MUTATED" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-4001                     TCGA-AG-4007 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-4008                     TCGA-AG-4022 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
  "AMP PEAK 16(15Q26.1) MUTATED" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AH-6544                     TCGA-AH-6547 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
  "AMP PEAK 16(15Q26.1) MUTATED" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AH-6897                     TCGA-AH-6903 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
  "AMP PEAK 16(15Q26.1) MUTATED" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
  "AMP PEAK 16(15Q26.1) MUTATED" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-CL-4957                     TCGA-CL-5917 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-CL-5918                     TCGA-DC-4745 
  "AMP PEAK 16(15Q26.1) MUTATED" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-DC-4749                     TCGA-DC-5337 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-DC-6155                     TCGA-DC-6156 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-DC-6157                     TCGA-DC-6158 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-DC-6160                     TCGA-DC-6681 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
  "AMP PEAK 16(15Q26.1) MUTATED" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-EF-5830                     TCGA-EF-5831 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-EI-6506                     TCGA-EI-6507 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-EI-6512                     TCGA-EI-6513 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-EI-6514                     TCGA-EI-6881 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-EI-6884                     TCGA-EI-6885 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-EI-7004                     TCGA-F5-6465 
  "AMP PEAK 16(15Q26.1) MUTATED" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-F5-6571                     TCGA-F5-6702 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-F5-6810                     TCGA-F5-6811 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-F5-6812                     TCGA-F5-6813 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
"AMP PEAK 16(15Q26.1) WILD-TYPE"   "AMP PEAK 16(15Q26.1) MUTATED" 
                    TCGA-G5-6233                     TCGA-G5-6235 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
[1] "hr=" "1.3"
D16V2, continuous
                                vv
clus                             STAGE I STAGE II STAGE IIA STAGE IIB STAGE IIC
  AMP PEAK 16(15Q26.1) MUTATED         2        1         3         0         0
  AMP PEAK 16(15Q26.1) WILD-TYPE      28        7        35         2         2
                                vv
clus                             STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  AMP PEAK 16(15Q26.1) MUTATED           0          0          2          4
  AMP PEAK 16(15Q26.1) WILD-TYPE         5          9         21         10
                                vv
clus                             STAGE IV STAGE IVA
  AMP PEAK 16(15Q26.1) MUTATED          0         1
  AMP PEAK 16(15Q26.1) WILD-TYPE       17         8
D16V3, multiclass
                                vv
clus                              T1  T2  T3  T4
  AMP PEAK 16(15Q26.1) MUTATED     1   1   9   2
  AMP PEAK 16(15Q26.1) WILD-TYPE   8  28 100  12
D16V4, multiclass
    clus
vv   AMP PEAK 16(15Q26.1) MUTATED AMP PEAK 16(15Q26.1) WILD-TYPE
  T1                            1                              8
  T2                            1                             28
  T3                            9                            100
  T4                            2                             12
                                vv
clus                             N0 N1 N2
  AMP PEAK 16(15Q26.1) MUTATED    6  2  5
  AMP PEAK 16(15Q26.1) WILD-TYPE 77 43 27
D16V5, multiclass
    clus
vv   AMP PEAK 16(15Q26.1) MUTATED AMP PEAK 16(15Q26.1) WILD-TYPE
  N0                            6                             77
  N1                            2                             43
  N2                            5                             27
                                vv
clus                              M0  M1 M1A  MX
  AMP PEAK 16(15Q26.1) MUTATED    11   0   0   1
  AMP PEAK 16(15Q26.1) WILD-TYPE 112  22   2  12
D16V6, multiclass
     clus
vv    AMP PEAK 16(15Q26.1) MUTATED AMP PEAK 16(15Q26.1) WILD-TYPE
  M0                            11                            112
  M1                             0                             22
  M1A                            0                              2
  MX                             1                             12
D16V7, binary
                                cls
clus                              0  1
  AMP PEAK 16(15Q26.1) MUTATED    8  5
  AMP PEAK 16(15Q26.1) WILD-TYPE 66 83
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 16(15Q26.1) MUTATED      8    5
  AMP PEAK 16(15Q26.1) WILD-TYPE   66   83
        clus
vv       AMP PEAK 16(15Q26.1) MUTATED AMP PEAK 16(15Q26.1) WILD-TYPE
  FEMALE                            8                             66
  MALE                              5                             83
D16V8, binary
                                cls
clus                               0   1
  AMP PEAK 16(15Q26.1) MUTATED    11   2
  AMP PEAK 16(15Q26.1) WILD-TYPE 132  11
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 16(15Q26.1) MUTATED     11    2
  AMP PEAK 16(15Q26.1) WILD-TYPE  132   11
                                clus
vv                               AMP PEAK 16(15Q26.1) MUTATED
  RECTAL ADENOCARCINOMA                                    11
  RECTAL MUCINOUS ADENOCARCINOMA                            2
                                clus
vv                               AMP PEAK 16(15Q26.1) WILD-TYPE
  RECTAL ADENOCARCINOMA                                     132
  RECTAL MUCINOUS ADENOCARCINOMA                             11
D16V9, binary
                                cls
clus                               0   1
  AMP PEAK 16(15Q26.1) MUTATED     2  11
  AMP PEAK 16(15Q26.1) WILD-TYPE   4 145
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 16(15Q26.1) MUTATED      2   11
  AMP PEAK 16(15Q26.1) WILD-TYPE    4  145
     clus
vv    AMP PEAK 16(15Q26.1) MUTATED AMP PEAK 16(15Q26.1) WILD-TYPE
  NO                             2                              4
  YES                           11                            145
                                vv
clus                              R0  R1  R2  RX
  AMP PEAK 16(15Q26.1) MUTATED    10   0   0   1
  AMP PEAK 16(15Q26.1) WILD-TYPE 111   2  12   2
D16V10, multiclass
    clus
vv   AMP PEAK 16(15Q26.1) MUTATED AMP PEAK 16(15Q26.1) WILD-TYPE
  R0                           10                            111
  R1                            0                              2
  R2                            0                             12
  RX                            1                              2
D16V11, continuous

Clustering(17) Variable = AMP PEAK 17(16P11.2) MUTATION ANALYSIS
D17V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 17(16P11.2) MUTATED   33  4
  AMP PEAK 17(16P11.2) WILD-TYPE 84  9
  AMP PEAK 17(16P11.2) MUTATED AMP PEAK 17(16P11.2) WILD-TYPE 
                            37                             93 
  AMP PEAK 17(16P11.2) MUTATED AMP PEAK 17(16P11.2) WILD-TYPE 
                             4                              9 
$`AMP PEAK 17(16P11.2) MUTATED`
TCGA-AF-2689 TCGA-AF-3911 TCGA-AF-3913 TCGA-AF-6136 TCGA-AF-6655 TCGA-AG-3582 
       17.95        25.02        10.39        15.35        11.67         1.02 
TCGA-AG-3726 TCGA-AG-3731 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4022 TCGA-AG-A014 
        7.96         1.02         1.02         1.02         0.99        15.91 
TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01N TCGA-AG-A02G TCGA-AG-A032 
       13.02         1.02        12.00        12.00        38.93        38.01 
TCGA-AH-6644 TCGA-BM-6198 TCGA-CI-6622 TCGA-CI-6623 TCGA-CL-5917 TCGA-DC-4749 
        0.72        10.19         6.94         9.37        60.00        11.01 
TCGA-DC-5869 TCGA-DC-6154 TCGA-DC-6683 TCGA-DY-A1DF TCGA-DY-A1DG TCGA-EF-5830 
       12.99        12.00        10.06        24.13        51.48         0.49 
TCGA-EI-6512 TCGA-EI-6514 TCGA-F5-6465 TCGA-F5-6702 TCGA-F5-6810 TCGA-F5-6811 
       17.69        16.31         3.39         2.17         0.39         1.02 
TCGA-F5-6863 
        0.76 

$`AMP PEAK 17(16P11.2) WILD-TYPE`
TCGA-AF-2687 TCGA-AF-2690 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-2693 TCGA-AF-3400 
       24.13        17.23        10.62        13.55        19.10        12.72 
TCGA-AF-4110 TCGA-AF-5654 TCGA-AF-6672 TCGA-AG-3575 TCGA-AG-3581 TCGA-AG-3583 
       14.50         8.45        10.39        12.00         1.02         2.01 
TCGA-AG-3586 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3605 TCGA-AG-3727 TCGA-AG-3742 
        1.02         1.02         0.99         0.99         0.95         0.99 
TCGA-AG-3878 TCGA-AG-3883 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 
        0.99         1.02         0.92         1.02         0.99         0.99 
TCGA-AG-3896 TCGA-AG-3999 TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C 
        1.02         1.02         1.02        20.94        13.91         6.02 
TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A01J TCGA-AG-A01W TCGA-AG-A01Y 
       25.94        23.01        17.03         1.02        70.03        63.98 
TCGA-AG-A020 TCGA-AG-A023 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02N TCGA-AG-A02X 
       10.98        51.98        49.94         1.94        61.94        40.96 
TCGA-AH-6544 TCGA-AH-6547 TCGA-AH-6643 TCGA-AH-6897 TCGA-AH-6903 TCGA-CI-6619 
        0.49         1.45         0.69         4.60         1.81         6.02 
TCGA-CI-6620 TCGA-CI-6624 TCGA-CL-4957 TCGA-CL-5918 TCGA-DC-4745 TCGA-DC-5337 
        6.02         4.70        13.97         7.99        10.98        15.02 
TCGA-DC-6155 TCGA-DC-6156 TCGA-DC-6157 TCGA-DC-6158 TCGA-DC-6160 TCGA-DC-6681 
       14.01        15.02        36.00         6.97        30.05        12.95 
TCGA-DC-6682 TCGA-DT-5265 TCGA-DY-A0XA TCGA-DY-A1DC TCGA-DY-A1DD TCGA-DY-A1DE 
       13.02         5.29       126.41        41.33        57.24       129.27 
TCGA-DY-A1H8 TCGA-EF-5831 TCGA-EI-6506 TCGA-EI-6507 TCGA-EI-6508 TCGA-EI-6509 
       32.58         2.40        20.55        19.96        20.91        17.00 
TCGA-EI-6510 TCGA-EI-6511 TCGA-EI-6513 TCGA-EI-6881 TCGA-EI-6882 TCGA-EI-6883 
       18.28        15.85        16.34        16.37         8.61        11.51 
TCGA-EI-6884 TCGA-EI-6885 TCGA-EI-6917 TCGA-EI-7002 TCGA-EI-7004 TCGA-F5-6571 
       10.78        13.61        17.46        11.97         8.45         0.85 
TCGA-F5-6812 TCGA-F5-6813 TCGA-F5-6814 TCGA-F5-6861 TCGA-F5-6864 TCGA-G5-6233 
        0.66         0.69         0.53         1.08         0.46        18.25 
TCGA-G5-6235 TCGA-G5-6572 TCGA-G5-6641 
       55.76        47.08        26.43 

  AMP PEAK 17(16P11.2) MUTATED AMP PEAK 17(16P11.2) WILD-TYPE 
                          0.39                           0.46 
  AMP PEAK 17(16P11.2) MUTATED AMP PEAK 17(16P11.2) WILD-TYPE 
                         60.00                         129.27 
  AMP PEAK 17(16P11.2) MUTATED AMP PEAK 17(16P11.2) WILD-TYPE 
                         10.39                          11.51 
[1] "0.4 - 60.0 (10.4)"  "0.5 - 129.3 (11.5)"
                    TCGA-AF-2687                     TCGA-AF-2689 
"AMP PEAK 17(16P11.2) WILD-TYPE"   "AMP PEAK 17(16P11.2) MUTATED" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"AMP PEAK 17(16P11.2) WILD-TYPE"   "AMP PEAK 17(16P11.2) MUTATED" 
                    TCGA-AF-3913                     TCGA-AF-4110 
  "AMP PEAK 17(16P11.2) MUTATED" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"AMP PEAK 17(16P11.2) WILD-TYPE"   "AMP PEAK 17(16P11.2) MUTATED" 
                    TCGA-AF-6655                     TCGA-AF-6672 
  "AMP PEAK 17(16P11.2) MUTATED" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-3575                     TCGA-AG-3581 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-3582                     TCGA-AG-3583 
  "AMP PEAK 17(16P11.2) MUTATED" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
  "AMP PEAK 17(16P11.2) MUTATED" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-3731                     TCGA-AG-3742 
  "AMP PEAK 17(16P11.2) MUTATED" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-4001                     TCGA-AG-4007 
  "AMP PEAK 17(16P11.2) MUTATED"   "AMP PEAK 17(16P11.2) MUTATED" 
                    TCGA-AG-4008                     TCGA-AG-4022 
"AMP PEAK 17(16P11.2) WILD-TYPE"   "AMP PEAK 17(16P11.2) MUTATED" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
  "AMP PEAK 17(16P11.2) MUTATED"   "AMP PEAK 17(16P11.2) MUTATED" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
  "AMP PEAK 17(16P11.2) MUTATED" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
  "AMP PEAK 17(16P11.2) MUTATED"   "AMP PEAK 17(16P11.2) MUTATED" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
  "AMP PEAK 17(16P11.2) MUTATED" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
"AMP PEAK 17(16P11.2) WILD-TYPE"   "AMP PEAK 17(16P11.2) MUTATED" 
                    TCGA-AH-6544                     TCGA-AH-6547 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
"AMP PEAK 17(16P11.2) WILD-TYPE"   "AMP PEAK 17(16P11.2) MUTATED" 
                    TCGA-AH-6897                     TCGA-AH-6903 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
  "AMP PEAK 17(16P11.2) MUTATED" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"AMP PEAK 17(16P11.2) WILD-TYPE"   "AMP PEAK 17(16P11.2) MUTATED" 
                    TCGA-CI-6623                     TCGA-CI-6624 
  "AMP PEAK 17(16P11.2) MUTATED" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-CL-4957                     TCGA-CL-5917 
"AMP PEAK 17(16P11.2) WILD-TYPE"   "AMP PEAK 17(16P11.2) MUTATED" 
                    TCGA-CL-5918                     TCGA-DC-4745 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-DC-4749                     TCGA-DC-5337 
  "AMP PEAK 17(16P11.2) MUTATED" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
  "AMP PEAK 17(16P11.2) MUTATED"   "AMP PEAK 17(16P11.2) MUTATED" 
                    TCGA-DC-6155                     TCGA-DC-6156 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-DC-6157                     TCGA-DC-6158 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-DC-6160                     TCGA-DC-6681 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
"AMP PEAK 17(16P11.2) WILD-TYPE"   "AMP PEAK 17(16P11.2) MUTATED" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
"AMP PEAK 17(16P11.2) WILD-TYPE"   "AMP PEAK 17(16P11.2) MUTATED" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
  "AMP PEAK 17(16P11.2) MUTATED" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-EF-5830                     TCGA-EF-5831 
  "AMP PEAK 17(16P11.2) MUTATED" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-EI-6506                     TCGA-EI-6507 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-EI-6512                     TCGA-EI-6513 
  "AMP PEAK 17(16P11.2) MUTATED" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-EI-6514                     TCGA-EI-6881 
  "AMP PEAK 17(16P11.2) MUTATED" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-EI-6884                     TCGA-EI-6885 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-EI-7004                     TCGA-F5-6465 
"AMP PEAK 17(16P11.2) WILD-TYPE"   "AMP PEAK 17(16P11.2) MUTATED" 
                    TCGA-F5-6571                     TCGA-F5-6702 
"AMP PEAK 17(16P11.2) WILD-TYPE"   "AMP PEAK 17(16P11.2) MUTATED" 
                    TCGA-F5-6810                     TCGA-F5-6811 
  "AMP PEAK 17(16P11.2) MUTATED"   "AMP PEAK 17(16P11.2) MUTATED" 
                    TCGA-F5-6812                     TCGA-F5-6813 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
  "AMP PEAK 17(16P11.2) MUTATED" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-G5-6233                     TCGA-G5-6235 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"AMP PEAK 17(16P11.2) WILD-TYPE"   "AMP PEAK 17(16P11.2) MUTATED" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"AMP PEAK 17(16P11.2) WILD-TYPE"   "AMP PEAK 17(16P11.2) MUTATED" 
                    TCGA-AF-3913                     TCGA-AF-4110 
  "AMP PEAK 17(16P11.2) MUTATED" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"AMP PEAK 17(16P11.2) WILD-TYPE"   "AMP PEAK 17(16P11.2) MUTATED" 
                    TCGA-AF-6655                     TCGA-AF-6672 
  "AMP PEAK 17(16P11.2) MUTATED" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-3575                     TCGA-AG-3581 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-3582                     TCGA-AG-3583 
  "AMP PEAK 17(16P11.2) MUTATED" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
  "AMP PEAK 17(16P11.2) MUTATED" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-3731                     TCGA-AG-3742 
  "AMP PEAK 17(16P11.2) MUTATED" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-4001                     TCGA-AG-4007 
  "AMP PEAK 17(16P11.2) MUTATED"   "AMP PEAK 17(16P11.2) MUTATED" 
                    TCGA-AG-4008                     TCGA-AG-4022 
"AMP PEAK 17(16P11.2) WILD-TYPE"   "AMP PEAK 17(16P11.2) MUTATED" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
  "AMP PEAK 17(16P11.2) MUTATED"   "AMP PEAK 17(16P11.2) MUTATED" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
  "AMP PEAK 17(16P11.2) MUTATED" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
  "AMP PEAK 17(16P11.2) MUTATED"   "AMP PEAK 17(16P11.2) MUTATED" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
  "AMP PEAK 17(16P11.2) MUTATED" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
"AMP PEAK 17(16P11.2) WILD-TYPE"   "AMP PEAK 17(16P11.2) MUTATED" 
                    TCGA-AH-6544                     TCGA-AH-6547 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
"AMP PEAK 17(16P11.2) WILD-TYPE"   "AMP PEAK 17(16P11.2) MUTATED" 
                    TCGA-AH-6897                     TCGA-AH-6903 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
  "AMP PEAK 17(16P11.2) MUTATED" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"AMP PEAK 17(16P11.2) WILD-TYPE"   "AMP PEAK 17(16P11.2) MUTATED" 
                    TCGA-CI-6623                     TCGA-CI-6624 
  "AMP PEAK 17(16P11.2) MUTATED" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-CL-4957                     TCGA-CL-5917 
"AMP PEAK 17(16P11.2) WILD-TYPE"   "AMP PEAK 17(16P11.2) MUTATED" 
                    TCGA-CL-5918                     TCGA-DC-4745 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-DC-4749                     TCGA-DC-5337 
  "AMP PEAK 17(16P11.2) MUTATED" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
  "AMP PEAK 17(16P11.2) MUTATED"   "AMP PEAK 17(16P11.2) MUTATED" 
                    TCGA-DC-6155                     TCGA-DC-6156 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-DC-6157                     TCGA-DC-6158 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-DC-6160                     TCGA-DC-6681 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
"AMP PEAK 17(16P11.2) WILD-TYPE"   "AMP PEAK 17(16P11.2) MUTATED" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
"AMP PEAK 17(16P11.2) WILD-TYPE"   "AMP PEAK 17(16P11.2) MUTATED" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
  "AMP PEAK 17(16P11.2) MUTATED" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-EF-5830                     TCGA-EF-5831 
  "AMP PEAK 17(16P11.2) MUTATED" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-EI-6506                     TCGA-EI-6507 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-EI-6512                     TCGA-EI-6513 
  "AMP PEAK 17(16P11.2) MUTATED" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-EI-6514                     TCGA-EI-6881 
  "AMP PEAK 17(16P11.2) MUTATED" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-EI-6884                     TCGA-EI-6885 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-EI-7004                     TCGA-F5-6465 
"AMP PEAK 17(16P11.2) WILD-TYPE"   "AMP PEAK 17(16P11.2) MUTATED" 
                    TCGA-F5-6571                     TCGA-F5-6702 
"AMP PEAK 17(16P11.2) WILD-TYPE"   "AMP PEAK 17(16P11.2) MUTATED" 
                    TCGA-F5-6810                     TCGA-F5-6811 
  "AMP PEAK 17(16P11.2) MUTATED"   "AMP PEAK 17(16P11.2) MUTATED" 
                    TCGA-F5-6812                     TCGA-F5-6813 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
  "AMP PEAK 17(16P11.2) MUTATED" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-G5-6233                     TCGA-G5-6235 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"AMP PEAK 17(16P11.2) WILD-TYPE"   "AMP PEAK 17(16P11.2) MUTATED" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"AMP PEAK 17(16P11.2) WILD-TYPE"   "AMP PEAK 17(16P11.2) MUTATED" 
                    TCGA-AF-3913                     TCGA-AF-4110 
  "AMP PEAK 17(16P11.2) MUTATED" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"AMP PEAK 17(16P11.2) WILD-TYPE"   "AMP PEAK 17(16P11.2) MUTATED" 
                    TCGA-AF-6655                     TCGA-AF-6672 
  "AMP PEAK 17(16P11.2) MUTATED" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-3575                     TCGA-AG-3581 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-3582                     TCGA-AG-3583 
  "AMP PEAK 17(16P11.2) MUTATED" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
  "AMP PEAK 17(16P11.2) MUTATED" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-3731                     TCGA-AG-3742 
  "AMP PEAK 17(16P11.2) MUTATED" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-4001                     TCGA-AG-4007 
  "AMP PEAK 17(16P11.2) MUTATED"   "AMP PEAK 17(16P11.2) MUTATED" 
                    TCGA-AG-4008                     TCGA-AG-4022 
"AMP PEAK 17(16P11.2) WILD-TYPE"   "AMP PEAK 17(16P11.2) MUTATED" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
  "AMP PEAK 17(16P11.2) MUTATED"   "AMP PEAK 17(16P11.2) MUTATED" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
  "AMP PEAK 17(16P11.2) MUTATED" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
  "AMP PEAK 17(16P11.2) MUTATED"   "AMP PEAK 17(16P11.2) MUTATED" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
  "AMP PEAK 17(16P11.2) MUTATED" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
"AMP PEAK 17(16P11.2) WILD-TYPE"   "AMP PEAK 17(16P11.2) MUTATED" 
                    TCGA-AH-6544                     TCGA-AH-6547 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
"AMP PEAK 17(16P11.2) WILD-TYPE"   "AMP PEAK 17(16P11.2) MUTATED" 
                    TCGA-AH-6897                     TCGA-AH-6903 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
  "AMP PEAK 17(16P11.2) MUTATED" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"AMP PEAK 17(16P11.2) WILD-TYPE"   "AMP PEAK 17(16P11.2) MUTATED" 
                    TCGA-CI-6623                     TCGA-CI-6624 
  "AMP PEAK 17(16P11.2) MUTATED" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-CL-4957                     TCGA-CL-5917 
"AMP PEAK 17(16P11.2) WILD-TYPE"   "AMP PEAK 17(16P11.2) MUTATED" 
                    TCGA-CL-5918                     TCGA-DC-4745 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-DC-4749                     TCGA-DC-5337 
  "AMP PEAK 17(16P11.2) MUTATED" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
  "AMP PEAK 17(16P11.2) MUTATED"   "AMP PEAK 17(16P11.2) MUTATED" 
                    TCGA-DC-6155                     TCGA-DC-6156 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-DC-6157                     TCGA-DC-6158 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-DC-6160                     TCGA-DC-6681 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
"AMP PEAK 17(16P11.2) WILD-TYPE"   "AMP PEAK 17(16P11.2) MUTATED" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
"AMP PEAK 17(16P11.2) WILD-TYPE"   "AMP PEAK 17(16P11.2) MUTATED" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
  "AMP PEAK 17(16P11.2) MUTATED" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-EF-5830                     TCGA-EF-5831 
  "AMP PEAK 17(16P11.2) MUTATED" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-EI-6506                     TCGA-EI-6507 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-EI-6512                     TCGA-EI-6513 
  "AMP PEAK 17(16P11.2) MUTATED" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-EI-6514                     TCGA-EI-6881 
  "AMP PEAK 17(16P11.2) MUTATED" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-EI-6884                     TCGA-EI-6885 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-EI-7004                     TCGA-F5-6465 
"AMP PEAK 17(16P11.2) WILD-TYPE"   "AMP PEAK 17(16P11.2) MUTATED" 
                    TCGA-F5-6571                     TCGA-F5-6702 
"AMP PEAK 17(16P11.2) WILD-TYPE"   "AMP PEAK 17(16P11.2) MUTATED" 
                    TCGA-F5-6810                     TCGA-F5-6811 
  "AMP PEAK 17(16P11.2) MUTATED"   "AMP PEAK 17(16P11.2) MUTATED" 
                    TCGA-F5-6812                     TCGA-F5-6813 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
  "AMP PEAK 17(16P11.2) MUTATED" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-G5-6233                     TCGA-G5-6235 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
[1] "hr=" "1.7"
D17V2, continuous
                                vv
clus                             STAGE I STAGE II STAGE IIA STAGE IIB STAGE IIC
  AMP PEAK 17(16P11.2) MUTATED         6        1         7         2         0
  AMP PEAK 17(16P11.2) WILD-TYPE      24        7        31         0         2
                                vv
clus                             STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  AMP PEAK 17(16P11.2) MUTATED           1          1         11          4
  AMP PEAK 17(16P11.2) WILD-TYPE         4          8         12         10
                                vv
clus                             STAGE IV STAGE IVA
  AMP PEAK 17(16P11.2) MUTATED          7         3
  AMP PEAK 17(16P11.2) WILD-TYPE       10         6
D17V3, multiclass
                                vv
clus                             T1 T2 T3 T4
  AMP PEAK 17(16P11.2) MUTATED    2  7 30  6
  AMP PEAK 17(16P11.2) WILD-TYPE  7 22 79  8
D17V4, multiclass
    clus
vv   AMP PEAK 17(16P11.2) MUTATED AMP PEAK 17(16P11.2) WILD-TYPE
  T1                            2                              7
  T2                            7                             22
  T3                           30                             79
  T4                            6                              8
                                vv
clus                             N0 N1 N2
  AMP PEAK 17(16P11.2) MUTATED   17 18  9
  AMP PEAK 17(16P11.2) WILD-TYPE 66 27 23
D17V5, multiclass
    clus
vv   AMP PEAK 17(16P11.2) MUTATED AMP PEAK 17(16P11.2) WILD-TYPE
  N0                           17                             66
  N1                           18                             27
  N2                            9                             23
                                vv
clus                             M0 M1 M1A MX
  AMP PEAK 17(16P11.2) MUTATED   29 11   0  4
  AMP PEAK 17(16P11.2) WILD-TYPE 94 11   2  9
D17V6, multiclass
     clus
vv    AMP PEAK 17(16P11.2) MUTATED AMP PEAK 17(16P11.2) WILD-TYPE
  M0                            29                             94
  M1                            11                             11
  M1A                            0                              2
  MX                             4                              9
D17V7, binary
                                cls
clus                              0  1
  AMP PEAK 17(16P11.2) MUTATED   19 26
  AMP PEAK 17(16P11.2) WILD-TYPE 55 62
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 17(16P11.2) MUTATED     19   26
  AMP PEAK 17(16P11.2) WILD-TYPE   55   62
        clus
vv       AMP PEAK 17(16P11.2) MUTATED AMP PEAK 17(16P11.2) WILD-TYPE
  FEMALE                           19                             55
  MALE                             26                             62
D17V8, binary
                                cls
clus                              0  1
  AMP PEAK 17(16P11.2) MUTATED   45  0
  AMP PEAK 17(16P11.2) WILD-TYPE 98 13
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 17(16P11.2) MUTATED     45    0
  AMP PEAK 17(16P11.2) WILD-TYPE   98   13
                                clus
vv                               AMP PEAK 17(16P11.2) MUTATED
  RECTAL ADENOCARCINOMA                                    45
  RECTAL MUCINOUS ADENOCARCINOMA                            0
                                clus
vv                               AMP PEAK 17(16P11.2) WILD-TYPE
  RECTAL ADENOCARCINOMA                                      98
  RECTAL MUCINOUS ADENOCARCINOMA                             13
D17V9, binary
                                cls
clus                               0   1
  AMP PEAK 17(16P11.2) MUTATED     3  42
  AMP PEAK 17(16P11.2) WILD-TYPE   3 114
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 17(16P11.2) MUTATED      3   42
  AMP PEAK 17(16P11.2) WILD-TYPE    3  114
     clus
vv    AMP PEAK 17(16P11.2) MUTATED AMP PEAK 17(16P11.2) WILD-TYPE
  NO                             3                              3
  YES                           42                            114
                                vv
clus                             R0 R1 R2 RX
  AMP PEAK 17(16P11.2) MUTATED   29  0  7  1
  AMP PEAK 17(16P11.2) WILD-TYPE 92  2  5  2
D17V10, multiclass
    clus
vv   AMP PEAK 17(16P11.2) MUTATED AMP PEAK 17(16P11.2) WILD-TYPE
  R0                           29                             92
  R1                            0                              2
  R2                            7                              5
  RX                            1                              2
D17V11, continuous

Clustering(18) Variable = AMP PEAK 18(17Q12) MUTATION ANALYSIS
D18V1, survival
                              sevent
clus2                           0  1
  AMP PEAK 18(17Q12) MUTATED   30  3
  AMP PEAK 18(17Q12) WILD-TYPE 87 10
  AMP PEAK 18(17Q12) MUTATED AMP PEAK 18(17Q12) WILD-TYPE 
                          33                           97 
  AMP PEAK 18(17Q12) MUTATED AMP PEAK 18(17Q12) WILD-TYPE 
                           3                           10 
$`AMP PEAK 18(17Q12) MUTATED`
TCGA-AF-2690 TCGA-AG-3575 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3587 TCGA-AG-3742 
       17.23        12.00         1.02         1.02         1.02         0.99 
TCGA-AG-3883 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A014 TCGA-AG-A016 
        1.02         1.02         1.02         1.02        15.91         1.02 
TCGA-AG-A01N TCGA-AG-A01Y TCGA-AG-A023 TCGA-AH-6643 TCGA-AH-6897 TCGA-CI-6619 
       12.00        63.98        51.98         0.69         4.60         6.02 
TCGA-CI-6623 TCGA-DC-6154 TCGA-DC-6682 TCGA-DC-6683 TCGA-DT-5265 TCGA-DY-A1DG 
        9.37        12.00        13.02        10.06         5.29        51.48 
TCGA-EI-6509 TCGA-EI-6510 TCGA-EI-6514 TCGA-EI-7002 TCGA-F5-6811 TCGA-F5-6813 
       17.00        18.28        16.31        11.97         1.02         0.69 
TCGA-F5-6864 TCGA-G5-6235 TCGA-G5-6641 
        0.46        55.76        26.43 

$`AMP PEAK 18(17Q12) WILD-TYPE`
TCGA-AF-2687 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-2693 TCGA-AF-3400 
       24.13        17.95        10.62        13.55        19.10        12.72 
TCGA-AF-3911 TCGA-AF-3913 TCGA-AF-4110 TCGA-AF-5654 TCGA-AF-6136 TCGA-AF-6655 
       25.02        10.39        14.50         8.45        15.35        11.67 
TCGA-AF-6672 TCGA-AG-3583 TCGA-AG-3586 TCGA-AG-3599 TCGA-AG-3605 TCGA-AG-3726 
       10.39         2.01         1.02         0.99         0.99         7.96 
TCGA-AG-3727 TCGA-AG-3731 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 
        0.95         1.02         0.99         0.92         1.02         0.99 
TCGA-AG-3894 TCGA-AG-3896 TCGA-AG-3999 TCGA-AG-4022 TCGA-AG-A002 TCGA-AG-A008 
        0.99         1.02         1.02         0.99        20.94        13.91 
TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A015 TCGA-AG-A01J 
        6.02        25.94        23.01        17.03        13.02         1.02 
TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G 
       12.00        70.03        10.98        49.94         1.94        38.93 
TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AH-6544 TCGA-AH-6547 TCGA-AH-6644 
       61.94        40.96        38.01         0.49         1.45         0.72 
TCGA-AH-6903 TCGA-BM-6198 TCGA-CI-6620 TCGA-CI-6622 TCGA-CI-6624 TCGA-CL-4957 
        1.81        10.19         6.02         6.94         4.70        13.97 
TCGA-CL-5917 TCGA-CL-5918 TCGA-DC-4745 TCGA-DC-4749 TCGA-DC-5337 TCGA-DC-5869 
       60.00         7.99        10.98        11.01        15.02        12.99 
TCGA-DC-6155 TCGA-DC-6156 TCGA-DC-6157 TCGA-DC-6158 TCGA-DC-6160 TCGA-DC-6681 
       14.01        15.02        36.00         6.97        30.05        12.95 
TCGA-DY-A0XA TCGA-DY-A1DC TCGA-DY-A1DD TCGA-DY-A1DE TCGA-DY-A1DF TCGA-DY-A1H8 
      126.41        41.33        57.24       129.27        24.13        32.58 
TCGA-EF-5830 TCGA-EF-5831 TCGA-EI-6506 TCGA-EI-6507 TCGA-EI-6508 TCGA-EI-6511 
        0.49         2.40        20.55        19.96        20.91        15.85 
TCGA-EI-6512 TCGA-EI-6513 TCGA-EI-6881 TCGA-EI-6882 TCGA-EI-6883 TCGA-EI-6884 
       17.69        16.34        16.37         8.61        11.51        10.78 
TCGA-EI-6885 TCGA-EI-6917 TCGA-EI-7004 TCGA-F5-6465 TCGA-F5-6571 TCGA-F5-6702 
       13.61        17.46         8.45         3.39         0.85         2.17 
TCGA-F5-6810 TCGA-F5-6812 TCGA-F5-6814 TCGA-F5-6861 TCGA-F5-6863 TCGA-G5-6233 
        0.39         0.66         0.53         1.08         0.76        18.25 
TCGA-G5-6572 
       47.08 

  AMP PEAK 18(17Q12) MUTATED AMP PEAK 18(17Q12) WILD-TYPE 
                        0.46                         0.39 
  AMP PEAK 18(17Q12) MUTATED AMP PEAK 18(17Q12) WILD-TYPE 
                       63.98                       129.27 
  AMP PEAK 18(17Q12) MUTATED AMP PEAK 18(17Q12) WILD-TYPE 
                        9.37                        11.51 
[1] "0.5 - 64.0 (9.4)"   "0.4 - 129.3 (11.5)"
                  TCGA-AF-2687                   TCGA-AF-2689 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AF-2690                   TCGA-AF-2691 
  "AMP PEAK 18(17Q12) MUTATED" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AF-2692                   TCGA-AF-2693 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AF-3400                   TCGA-AF-3911 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AF-3913                   TCGA-AF-4110 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AF-5654                   TCGA-AF-6136 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AF-6655                   TCGA-AF-6672 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-3575                   TCGA-AG-3581 
  "AMP PEAK 18(17Q12) MUTATED"   "AMP PEAK 18(17Q12) MUTATED" 
                  TCGA-AG-3582                   TCGA-AG-3583 
  "AMP PEAK 18(17Q12) MUTATED" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-3586                   TCGA-AG-3587 
"AMP PEAK 18(17Q12) WILD-TYPE"   "AMP PEAK 18(17Q12) MUTATED" 
                  TCGA-AG-3599                   TCGA-AG-3605 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-3726                   TCGA-AG-3727 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-3731                   TCGA-AG-3742 
"AMP PEAK 18(17Q12) WILD-TYPE"   "AMP PEAK 18(17Q12) MUTATED" 
                  TCGA-AG-3878                   TCGA-AG-3883 
"AMP PEAK 18(17Q12) WILD-TYPE"   "AMP PEAK 18(17Q12) MUTATED" 
                  TCGA-AG-3887                   TCGA-AG-3892 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-3893                   TCGA-AG-3894 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-3896                   TCGA-AG-3999 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-4001                   TCGA-AG-4007 
  "AMP PEAK 18(17Q12) MUTATED"   "AMP PEAK 18(17Q12) MUTATED" 
                  TCGA-AG-4008                   TCGA-AG-4022 
  "AMP PEAK 18(17Q12) MUTATED" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-A002                   TCGA-AG-A008 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-A00C                   TCGA-AG-A00H 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-A00Y                   TCGA-AG-A011 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-A014                   TCGA-AG-A015 
  "AMP PEAK 18(17Q12) MUTATED" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-A016                   TCGA-AG-A01J 
  "AMP PEAK 18(17Q12) MUTATED" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-A01L                   TCGA-AG-A01N 
"AMP PEAK 18(17Q12) WILD-TYPE"   "AMP PEAK 18(17Q12) MUTATED" 
                  TCGA-AG-A01W                   TCGA-AG-A01Y 
"AMP PEAK 18(17Q12) WILD-TYPE"   "AMP PEAK 18(17Q12) MUTATED" 
                  TCGA-AG-A020                   TCGA-AG-A023 
"AMP PEAK 18(17Q12) WILD-TYPE"   "AMP PEAK 18(17Q12) MUTATED" 
                  TCGA-AG-A025                   TCGA-AG-A026 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-A02G                   TCGA-AG-A02N 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-A02X                   TCGA-AG-A032 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AH-6544                   TCGA-AH-6547 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AH-6643                   TCGA-AH-6644 
  "AMP PEAK 18(17Q12) MUTATED" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AH-6897                   TCGA-AH-6903 
  "AMP PEAK 18(17Q12) MUTATED" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-BM-6198                   TCGA-CI-6619 
"AMP PEAK 18(17Q12) WILD-TYPE"   "AMP PEAK 18(17Q12) MUTATED" 
                  TCGA-CI-6620                   TCGA-CI-6622 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-CI-6623                   TCGA-CI-6624 
  "AMP PEAK 18(17Q12) MUTATED" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-CL-4957                   TCGA-CL-5917 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-CL-5918                   TCGA-DC-4745 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-DC-4749                   TCGA-DC-5337 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-DC-5869                   TCGA-DC-6154 
"AMP PEAK 18(17Q12) WILD-TYPE"   "AMP PEAK 18(17Q12) MUTATED" 
                  TCGA-DC-6155                   TCGA-DC-6156 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-DC-6157                   TCGA-DC-6158 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-DC-6160                   TCGA-DC-6681 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-DC-6682                   TCGA-DC-6683 
  "AMP PEAK 18(17Q12) MUTATED"   "AMP PEAK 18(17Q12) MUTATED" 
                  TCGA-DT-5265                   TCGA-DY-A0XA 
  "AMP PEAK 18(17Q12) MUTATED" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-DY-A1DC                   TCGA-DY-A1DD 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-DY-A1DE                   TCGA-DY-A1DF 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-DY-A1DG                   TCGA-DY-A1H8 
  "AMP PEAK 18(17Q12) MUTATED" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-EF-5830                   TCGA-EF-5831 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-EI-6506                   TCGA-EI-6507 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-EI-6508                   TCGA-EI-6509 
"AMP PEAK 18(17Q12) WILD-TYPE"   "AMP PEAK 18(17Q12) MUTATED" 
                  TCGA-EI-6510                   TCGA-EI-6511 
  "AMP PEAK 18(17Q12) MUTATED" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-EI-6512                   TCGA-EI-6513 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-EI-6514                   TCGA-EI-6881 
  "AMP PEAK 18(17Q12) MUTATED" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-EI-6882                   TCGA-EI-6883 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-EI-6884                   TCGA-EI-6885 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-EI-6917                   TCGA-EI-7002 
"AMP PEAK 18(17Q12) WILD-TYPE"   "AMP PEAK 18(17Q12) MUTATED" 
                  TCGA-EI-7004                   TCGA-F5-6465 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-F5-6571                   TCGA-F5-6702 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-F5-6810                   TCGA-F5-6811 
"AMP PEAK 18(17Q12) WILD-TYPE"   "AMP PEAK 18(17Q12) MUTATED" 
                  TCGA-F5-6812                   TCGA-F5-6813 
"AMP PEAK 18(17Q12) WILD-TYPE"   "AMP PEAK 18(17Q12) MUTATED" 
                  TCGA-F5-6814                   TCGA-F5-6861 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-F5-6863                   TCGA-F5-6864 
"AMP PEAK 18(17Q12) WILD-TYPE"   "AMP PEAK 18(17Q12) MUTATED" 
                  TCGA-G5-6233                   TCGA-G5-6235 
"AMP PEAK 18(17Q12) WILD-TYPE"   "AMP PEAK 18(17Q12) MUTATED" 
                  TCGA-G5-6572                   TCGA-G5-6641 
"AMP PEAK 18(17Q12) WILD-TYPE"   "AMP PEAK 18(17Q12) MUTATED" 
                  TCGA-AF-2687                   TCGA-AF-2689 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AF-2690                   TCGA-AF-2691 
  "AMP PEAK 18(17Q12) MUTATED" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AF-2692                   TCGA-AF-2693 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AF-3400                   TCGA-AF-3911 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AF-3913                   TCGA-AF-4110 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AF-5654                   TCGA-AF-6136 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AF-6655                   TCGA-AF-6672 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-3575                   TCGA-AG-3581 
  "AMP PEAK 18(17Q12) MUTATED"   "AMP PEAK 18(17Q12) MUTATED" 
                  TCGA-AG-3582                   TCGA-AG-3583 
  "AMP PEAK 18(17Q12) MUTATED" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-3586                   TCGA-AG-3587 
"AMP PEAK 18(17Q12) WILD-TYPE"   "AMP PEAK 18(17Q12) MUTATED" 
                  TCGA-AG-3599                   TCGA-AG-3605 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-3726                   TCGA-AG-3727 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-3731                   TCGA-AG-3742 
"AMP PEAK 18(17Q12) WILD-TYPE"   "AMP PEAK 18(17Q12) MUTATED" 
                  TCGA-AG-3878                   TCGA-AG-3883 
"AMP PEAK 18(17Q12) WILD-TYPE"   "AMP PEAK 18(17Q12) MUTATED" 
                  TCGA-AG-3887                   TCGA-AG-3892 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-3893                   TCGA-AG-3894 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-3896                   TCGA-AG-3999 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-4001                   TCGA-AG-4007 
  "AMP PEAK 18(17Q12) MUTATED"   "AMP PEAK 18(17Q12) MUTATED" 
                  TCGA-AG-4008                   TCGA-AG-4022 
  "AMP PEAK 18(17Q12) MUTATED" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-A002                   TCGA-AG-A008 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-A00C                   TCGA-AG-A00H 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-A00Y                   TCGA-AG-A011 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-A014                   TCGA-AG-A015 
  "AMP PEAK 18(17Q12) MUTATED" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-A016                   TCGA-AG-A01J 
  "AMP PEAK 18(17Q12) MUTATED" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-A01L                   TCGA-AG-A01N 
"AMP PEAK 18(17Q12) WILD-TYPE"   "AMP PEAK 18(17Q12) MUTATED" 
                  TCGA-AG-A01W                   TCGA-AG-A01Y 
"AMP PEAK 18(17Q12) WILD-TYPE"   "AMP PEAK 18(17Q12) MUTATED" 
                  TCGA-AG-A020                   TCGA-AG-A023 
"AMP PEAK 18(17Q12) WILD-TYPE"   "AMP PEAK 18(17Q12) MUTATED" 
                  TCGA-AG-A025                   TCGA-AG-A026 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-A02G                   TCGA-AG-A02N 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-A02X                   TCGA-AG-A032 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AH-6544                   TCGA-AH-6547 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AH-6643                   TCGA-AH-6644 
  "AMP PEAK 18(17Q12) MUTATED" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AH-6897                   TCGA-AH-6903 
  "AMP PEAK 18(17Q12) MUTATED" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-BM-6198                   TCGA-CI-6619 
"AMP PEAK 18(17Q12) WILD-TYPE"   "AMP PEAK 18(17Q12) MUTATED" 
                  TCGA-CI-6620                   TCGA-CI-6622 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-CI-6623                   TCGA-CI-6624 
  "AMP PEAK 18(17Q12) MUTATED" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-CL-4957                   TCGA-CL-5917 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-CL-5918                   TCGA-DC-4745 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-DC-4749                   TCGA-DC-5337 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-DC-5869                   TCGA-DC-6154 
"AMP PEAK 18(17Q12) WILD-TYPE"   "AMP PEAK 18(17Q12) MUTATED" 
                  TCGA-DC-6155                   TCGA-DC-6156 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-DC-6157                   TCGA-DC-6158 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-DC-6160                   TCGA-DC-6681 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-DC-6682                   TCGA-DC-6683 
  "AMP PEAK 18(17Q12) MUTATED"   "AMP PEAK 18(17Q12) MUTATED" 
                  TCGA-DT-5265                   TCGA-DY-A0XA 
  "AMP PEAK 18(17Q12) MUTATED" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-DY-A1DC                   TCGA-DY-A1DD 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-DY-A1DE                   TCGA-DY-A1DF 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-DY-A1DG                   TCGA-DY-A1H8 
  "AMP PEAK 18(17Q12) MUTATED" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-EF-5830                   TCGA-EF-5831 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-EI-6506                   TCGA-EI-6507 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-EI-6508                   TCGA-EI-6509 
"AMP PEAK 18(17Q12) WILD-TYPE"   "AMP PEAK 18(17Q12) MUTATED" 
                  TCGA-EI-6510                   TCGA-EI-6511 
  "AMP PEAK 18(17Q12) MUTATED" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-EI-6512                   TCGA-EI-6513 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-EI-6514                   TCGA-EI-6881 
  "AMP PEAK 18(17Q12) MUTATED" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-EI-6882                   TCGA-EI-6883 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-EI-6884                   TCGA-EI-6885 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-EI-6917                   TCGA-EI-7002 
"AMP PEAK 18(17Q12) WILD-TYPE"   "AMP PEAK 18(17Q12) MUTATED" 
                  TCGA-EI-7004                   TCGA-F5-6465 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-F5-6571                   TCGA-F5-6702 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-F5-6810                   TCGA-F5-6811 
"AMP PEAK 18(17Q12) WILD-TYPE"   "AMP PEAK 18(17Q12) MUTATED" 
                  TCGA-F5-6812                   TCGA-F5-6813 
"AMP PEAK 18(17Q12) WILD-TYPE"   "AMP PEAK 18(17Q12) MUTATED" 
                  TCGA-F5-6814                   TCGA-F5-6861 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-F5-6863                   TCGA-F5-6864 
"AMP PEAK 18(17Q12) WILD-TYPE"   "AMP PEAK 18(17Q12) MUTATED" 
                  TCGA-G5-6233                   TCGA-G5-6235 
"AMP PEAK 18(17Q12) WILD-TYPE"   "AMP PEAK 18(17Q12) MUTATED" 
                  TCGA-G5-6572                   TCGA-G5-6641 
"AMP PEAK 18(17Q12) WILD-TYPE"   "AMP PEAK 18(17Q12) MUTATED" 
                  TCGA-AF-2687                   TCGA-AF-2689 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AF-2690                   TCGA-AF-2691 
  "AMP PEAK 18(17Q12) MUTATED" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AF-2692                   TCGA-AF-2693 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AF-3400                   TCGA-AF-3911 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AF-3913                   TCGA-AF-4110 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AF-5654                   TCGA-AF-6136 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AF-6655                   TCGA-AF-6672 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-3575                   TCGA-AG-3581 
  "AMP PEAK 18(17Q12) MUTATED"   "AMP PEAK 18(17Q12) MUTATED" 
                  TCGA-AG-3582                   TCGA-AG-3583 
  "AMP PEAK 18(17Q12) MUTATED" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-3586                   TCGA-AG-3587 
"AMP PEAK 18(17Q12) WILD-TYPE"   "AMP PEAK 18(17Q12) MUTATED" 
                  TCGA-AG-3599                   TCGA-AG-3605 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-3726                   TCGA-AG-3727 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-3731                   TCGA-AG-3742 
"AMP PEAK 18(17Q12) WILD-TYPE"   "AMP PEAK 18(17Q12) MUTATED" 
                  TCGA-AG-3878                   TCGA-AG-3883 
"AMP PEAK 18(17Q12) WILD-TYPE"   "AMP PEAK 18(17Q12) MUTATED" 
                  TCGA-AG-3887                   TCGA-AG-3892 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-3893                   TCGA-AG-3894 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-3896                   TCGA-AG-3999 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-4001                   TCGA-AG-4007 
  "AMP PEAK 18(17Q12) MUTATED"   "AMP PEAK 18(17Q12) MUTATED" 
                  TCGA-AG-4008                   TCGA-AG-4022 
  "AMP PEAK 18(17Q12) MUTATED" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-A002                   TCGA-AG-A008 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-A00C                   TCGA-AG-A00H 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-A00Y                   TCGA-AG-A011 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-A014                   TCGA-AG-A015 
  "AMP PEAK 18(17Q12) MUTATED" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-A016                   TCGA-AG-A01J 
  "AMP PEAK 18(17Q12) MUTATED" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-A01L                   TCGA-AG-A01N 
"AMP PEAK 18(17Q12) WILD-TYPE"   "AMP PEAK 18(17Q12) MUTATED" 
                  TCGA-AG-A01W                   TCGA-AG-A01Y 
"AMP PEAK 18(17Q12) WILD-TYPE"   "AMP PEAK 18(17Q12) MUTATED" 
                  TCGA-AG-A020                   TCGA-AG-A023 
"AMP PEAK 18(17Q12) WILD-TYPE"   "AMP PEAK 18(17Q12) MUTATED" 
                  TCGA-AG-A025                   TCGA-AG-A026 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-A02G                   TCGA-AG-A02N 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-A02X                   TCGA-AG-A032 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AH-6544                   TCGA-AH-6547 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AH-6643                   TCGA-AH-6644 
  "AMP PEAK 18(17Q12) MUTATED" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AH-6897                   TCGA-AH-6903 
  "AMP PEAK 18(17Q12) MUTATED" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-BM-6198                   TCGA-CI-6619 
"AMP PEAK 18(17Q12) WILD-TYPE"   "AMP PEAK 18(17Q12) MUTATED" 
                  TCGA-CI-6620                   TCGA-CI-6622 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-CI-6623                   TCGA-CI-6624 
  "AMP PEAK 18(17Q12) MUTATED" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-CL-4957                   TCGA-CL-5917 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-CL-5918                   TCGA-DC-4745 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-DC-4749                   TCGA-DC-5337 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-DC-5869                   TCGA-DC-6154 
"AMP PEAK 18(17Q12) WILD-TYPE"   "AMP PEAK 18(17Q12) MUTATED" 
                  TCGA-DC-6155                   TCGA-DC-6156 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-DC-6157                   TCGA-DC-6158 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-DC-6160                   TCGA-DC-6681 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-DC-6682                   TCGA-DC-6683 
  "AMP PEAK 18(17Q12) MUTATED"   "AMP PEAK 18(17Q12) MUTATED" 
                  TCGA-DT-5265                   TCGA-DY-A0XA 
  "AMP PEAK 18(17Q12) MUTATED" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-DY-A1DC                   TCGA-DY-A1DD 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-DY-A1DE                   TCGA-DY-A1DF 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-DY-A1DG                   TCGA-DY-A1H8 
  "AMP PEAK 18(17Q12) MUTATED" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-EF-5830                   TCGA-EF-5831 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-EI-6506                   TCGA-EI-6507 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-EI-6508                   TCGA-EI-6509 
"AMP PEAK 18(17Q12) WILD-TYPE"   "AMP PEAK 18(17Q12) MUTATED" 
                  TCGA-EI-6510                   TCGA-EI-6511 
  "AMP PEAK 18(17Q12) MUTATED" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-EI-6512                   TCGA-EI-6513 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-EI-6514                   TCGA-EI-6881 
  "AMP PEAK 18(17Q12) MUTATED" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-EI-6882                   TCGA-EI-6883 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-EI-6884                   TCGA-EI-6885 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-EI-6917                   TCGA-EI-7002 
"AMP PEAK 18(17Q12) WILD-TYPE"   "AMP PEAK 18(17Q12) MUTATED" 
                  TCGA-EI-7004                   TCGA-F5-6465 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-F5-6571                   TCGA-F5-6702 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-F5-6810                   TCGA-F5-6811 
"AMP PEAK 18(17Q12) WILD-TYPE"   "AMP PEAK 18(17Q12) MUTATED" 
                  TCGA-F5-6812                   TCGA-F5-6813 
"AMP PEAK 18(17Q12) WILD-TYPE"   "AMP PEAK 18(17Q12) MUTATED" 
                  TCGA-F5-6814                   TCGA-F5-6861 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-F5-6863                   TCGA-F5-6864 
"AMP PEAK 18(17Q12) WILD-TYPE"   "AMP PEAK 18(17Q12) MUTATED" 
                  TCGA-G5-6233                   TCGA-G5-6235 
"AMP PEAK 18(17Q12) WILD-TYPE"   "AMP PEAK 18(17Q12) MUTATED" 
                  TCGA-G5-6572                   TCGA-G5-6641 
"AMP PEAK 18(17Q12) WILD-TYPE"   "AMP PEAK 18(17Q12) MUTATED" 
[1] "hr=" "1.1"
D18V2, continuous
                              vv
clus                           STAGE I STAGE II STAGE IIA STAGE IIB STAGE IIC
  AMP PEAK 18(17Q12) MUTATED         8        3        10         0         0
  AMP PEAK 18(17Q12) WILD-TYPE      22        5        28         2         2
                              vv
clus                           STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  AMP PEAK 18(17Q12) MUTATED           1          1          4          6
  AMP PEAK 18(17Q12) WILD-TYPE         4          8         19          8
                              vv
clus                           STAGE IV STAGE IVA
  AMP PEAK 18(17Q12) MUTATED          7         3
  AMP PEAK 18(17Q12) WILD-TYPE       10         6
D18V3, multiclass
                              vv
clus                           T1 T2 T3 T4
  AMP PEAK 18(17Q12) MUTATED    3  8 27  5
  AMP PEAK 18(17Q12) WILD-TYPE  6 21 82  9
D18V4, multiclass
    clus
vv   AMP PEAK 18(17Q12) MUTATED AMP PEAK 18(17Q12) WILD-TYPE
  T1                          3                            6
  T2                          8                           21
  T3                         27                           82
  T4                          5                            9
                              vv
clus                           N0 N1 N2
  AMP PEAK 18(17Q12) MUTATED   23  9 11
  AMP PEAK 18(17Q12) WILD-TYPE 60 36 21
D18V5, multiclass
    clus
vv   AMP PEAK 18(17Q12) MUTATED AMP PEAK 18(17Q12) WILD-TYPE
  N0                         23                           60
  N1                          9                           36
  N2                         11                           21
                              vv
clus                           M0 M1 M1A MX
  AMP PEAK 18(17Q12) MUTATED   30  9   0  4
  AMP PEAK 18(17Q12) WILD-TYPE 93 13   2  9
D18V6, multiclass
     clus
vv    AMP PEAK 18(17Q12) MUTATED AMP PEAK 18(17Q12) WILD-TYPE
  M0                          30                           93
  M1                           9                           13
  M1A                          0                            2
  MX                           4                            9
D18V7, binary
                              cls
clus                            0  1
  AMP PEAK 18(17Q12) MUTATED   16 27
  AMP PEAK 18(17Q12) WILD-TYPE 58 61
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 18(17Q12) MUTATED     16   27
  AMP PEAK 18(17Q12) WILD-TYPE   58   61
        clus
vv       AMP PEAK 18(17Q12) MUTATED AMP PEAK 18(17Q12) WILD-TYPE
  FEMALE                         16                           58
  MALE                           27                           61
D18V8, binary
                              cls
clus                             0   1
  AMP PEAK 18(17Q12) MUTATED    41   2
  AMP PEAK 18(17Q12) WILD-TYPE 102  11
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 18(17Q12) MUTATED     41    2
  AMP PEAK 18(17Q12) WILD-TYPE  102   11
                                clus
vv                               AMP PEAK 18(17Q12) MUTATED
  RECTAL ADENOCARCINOMA                                  41
  RECTAL MUCINOUS ADENOCARCINOMA                          2
                                clus
vv                               AMP PEAK 18(17Q12) WILD-TYPE
  RECTAL ADENOCARCINOMA                                   102
  RECTAL MUCINOUS ADENOCARCINOMA                           11
D18V9, binary
                              cls
clus                             0   1
  AMP PEAK 18(17Q12) MUTATED     0  43
  AMP PEAK 18(17Q12) WILD-TYPE   6 113
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 18(17Q12) MUTATED      0   43
  AMP PEAK 18(17Q12) WILD-TYPE    6  113
     clus
vv    AMP PEAK 18(17Q12) MUTATED AMP PEAK 18(17Q12) WILD-TYPE
  NO                           0                            6
  YES                         43                          113
                              vv
clus                           R0 R1 R2 RX
  AMP PEAK 18(17Q12) MUTATED   30  1  6  1
  AMP PEAK 18(17Q12) WILD-TYPE 91  1  6  2
D18V10, multiclass
    clus
vv   AMP PEAK 18(17Q12) MUTATED AMP PEAK 18(17Q12) WILD-TYPE
  R0                         30                           91
  R1                          1                            1
  R2                          6                            6
  RX                          1                            2
D18V11, continuous

Clustering(19) Variable = AMP PEAK 19(17Q24.1) MUTATION ANALYSIS
D19V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 19(17Q24.1) MUTATED   26  3
  AMP PEAK 19(17Q24.1) WILD-TYPE 91 10
  AMP PEAK 19(17Q24.1) MUTATED AMP PEAK 19(17Q24.1) WILD-TYPE 
                            29                            101 
  AMP PEAK 19(17Q24.1) MUTATED AMP PEAK 19(17Q24.1) WILD-TYPE 
                             3                             10 
$`AMP PEAK 19(17Q24.1) MUTATED`
TCGA-AF-2689 TCGA-AF-2690 TCGA-AF-2692 TCGA-AG-3575 TCGA-AG-3581 TCGA-AG-3587 
       17.95        17.23        13.55        12.00         1.02         1.02 
TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A014 TCGA-AG-A016 TCGA-AG-A01N 
        1.02         1.02         1.02        15.91         1.02        12.00 
TCGA-AG-A023 TCGA-AH-6643 TCGA-AH-6897 TCGA-CI-6619 TCGA-DC-6154 TCGA-DC-6682 
       51.98         0.69         4.60         6.02        12.00        13.02 
TCGA-DC-6683 TCGA-DY-A1DE TCGA-DY-A1DG TCGA-EF-5830 TCGA-EF-5831 TCGA-EI-6510 
       10.06       129.27        51.48         0.49         2.40        18.28 
TCGA-EI-6514 TCGA-EI-7002 TCGA-F5-6811 TCGA-F5-6864 TCGA-G5-6235 
       16.31        11.97         1.02         0.46        55.76 

$`AMP PEAK 19(17Q24.1) WILD-TYPE`
TCGA-AF-2687 TCGA-AF-2691 TCGA-AF-2693 TCGA-AF-3400 TCGA-AF-3911 TCGA-AF-3913 
       24.13        10.62        19.10        12.72        25.02        10.39 
TCGA-AF-4110 TCGA-AF-5654 TCGA-AF-6136 TCGA-AF-6655 TCGA-AF-6672 TCGA-AG-3582 
       14.50         8.45        15.35        11.67        10.39         1.02 
TCGA-AG-3583 TCGA-AG-3586 TCGA-AG-3599 TCGA-AG-3605 TCGA-AG-3726 TCGA-AG-3727 
        2.01         1.02         0.99         0.99         7.96         0.95 
TCGA-AG-3731 TCGA-AG-3742 TCGA-AG-3878 TCGA-AG-3883 TCGA-AG-3887 TCGA-AG-3892 
        1.02         0.99         0.99         1.02         0.92         1.02 
TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3896 TCGA-AG-3999 TCGA-AG-4022 TCGA-AG-A002 
        0.99         0.99         1.02         1.02         0.99        20.94 
TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A015 
       13.91         6.02        25.94        23.01        17.03        13.02 
TCGA-AG-A01J TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 
        1.02        12.00        70.03        63.98        10.98        49.94 
TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AH-6544 
        1.94        38.93        61.94        40.96        38.01         0.49 
TCGA-AH-6547 TCGA-AH-6644 TCGA-AH-6903 TCGA-BM-6198 TCGA-CI-6620 TCGA-CI-6622 
        1.45         0.72         1.81        10.19         6.02         6.94 
TCGA-CI-6623 TCGA-CI-6624 TCGA-CL-4957 TCGA-CL-5917 TCGA-CL-5918 TCGA-DC-4745 
        9.37         4.70        13.97        60.00         7.99        10.98 
TCGA-DC-4749 TCGA-DC-5337 TCGA-DC-5869 TCGA-DC-6155 TCGA-DC-6156 TCGA-DC-6157 
       11.01        15.02        12.99        14.01        15.02        36.00 
TCGA-DC-6158 TCGA-DC-6160 TCGA-DC-6681 TCGA-DT-5265 TCGA-DY-A0XA TCGA-DY-A1DC 
        6.97        30.05        12.95         5.29       126.41        41.33 
TCGA-DY-A1DD TCGA-DY-A1DF TCGA-DY-A1H8 TCGA-EI-6506 TCGA-EI-6507 TCGA-EI-6508 
       57.24        24.13        32.58        20.55        19.96        20.91 
TCGA-EI-6509 TCGA-EI-6511 TCGA-EI-6512 TCGA-EI-6513 TCGA-EI-6881 TCGA-EI-6882 
       17.00        15.85        17.69        16.34        16.37         8.61 
TCGA-EI-6883 TCGA-EI-6884 TCGA-EI-6885 TCGA-EI-6917 TCGA-EI-7004 TCGA-F5-6465 
       11.51        10.78        13.61        17.46         8.45         3.39 
TCGA-F5-6571 TCGA-F5-6702 TCGA-F5-6810 TCGA-F5-6812 TCGA-F5-6813 TCGA-F5-6814 
        0.85         2.17         0.39         0.66         0.69         0.53 
TCGA-F5-6861 TCGA-F5-6863 TCGA-G5-6233 TCGA-G5-6572 TCGA-G5-6641 
        1.08         0.76        18.25        47.08        26.43 

  AMP PEAK 19(17Q24.1) MUTATED AMP PEAK 19(17Q24.1) WILD-TYPE 
                          0.46                           0.39 
  AMP PEAK 19(17Q24.1) MUTATED AMP PEAK 19(17Q24.1) WILD-TYPE 
                        129.27                         126.41 
  AMP PEAK 19(17Q24.1) MUTATED AMP PEAK 19(17Q24.1) WILD-TYPE 
                         11.97                          10.98 
[1] "0.5 - 129.3 (12.0)" "0.4 - 126.4 (11.0)"
                    TCGA-AF-2687                     TCGA-AF-2689 
"AMP PEAK 19(17Q24.1) WILD-TYPE"   "AMP PEAK 19(17Q24.1) MUTATED" 
                    TCGA-AF-2690                     TCGA-AF-2691 
  "AMP PEAK 19(17Q24.1) MUTATED" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
  "AMP PEAK 19(17Q24.1) MUTATED" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-3575                     TCGA-AG-3581 
  "AMP PEAK 19(17Q24.1) MUTATED"   "AMP PEAK 19(17Q24.1) MUTATED" 
                    TCGA-AG-3582                     TCGA-AG-3583 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"AMP PEAK 19(17Q24.1) WILD-TYPE"   "AMP PEAK 19(17Q24.1) MUTATED" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-4001                     TCGA-AG-4007 
  "AMP PEAK 19(17Q24.1) MUTATED"   "AMP PEAK 19(17Q24.1) MUTATED" 
                    TCGA-AG-4008                     TCGA-AG-4022 
  "AMP PEAK 19(17Q24.1) MUTATED" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
  "AMP PEAK 19(17Q24.1) MUTATED" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
  "AMP PEAK 19(17Q24.1) MUTATED" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
"AMP PEAK 19(17Q24.1) WILD-TYPE"   "AMP PEAK 19(17Q24.1) MUTATED" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"AMP PEAK 19(17Q24.1) WILD-TYPE"   "AMP PEAK 19(17Q24.1) MUTATED" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AH-6544                     TCGA-AH-6547 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
  "AMP PEAK 19(17Q24.1) MUTATED" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AH-6897                     TCGA-AH-6903 
  "AMP PEAK 19(17Q24.1) MUTATED" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
"AMP PEAK 19(17Q24.1) WILD-TYPE"   "AMP PEAK 19(17Q24.1) MUTATED" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-CL-4957                     TCGA-CL-5917 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-CL-5918                     TCGA-DC-4745 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-DC-4749                     TCGA-DC-5337 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
"AMP PEAK 19(17Q24.1) WILD-TYPE"   "AMP PEAK 19(17Q24.1) MUTATED" 
                    TCGA-DC-6155                     TCGA-DC-6156 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-DC-6157                     TCGA-DC-6158 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-DC-6160                     TCGA-DC-6681 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
  "AMP PEAK 19(17Q24.1) MUTATED"   "AMP PEAK 19(17Q24.1) MUTATED" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
  "AMP PEAK 19(17Q24.1) MUTATED" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
  "AMP PEAK 19(17Q24.1) MUTATED" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-EF-5830                     TCGA-EF-5831 
  "AMP PEAK 19(17Q24.1) MUTATED"   "AMP PEAK 19(17Q24.1) MUTATED" 
                    TCGA-EI-6506                     TCGA-EI-6507 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-EI-6510                     TCGA-EI-6511 
  "AMP PEAK 19(17Q24.1) MUTATED" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-EI-6512                     TCGA-EI-6513 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-EI-6514                     TCGA-EI-6881 
  "AMP PEAK 19(17Q24.1) MUTATED" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-EI-6884                     TCGA-EI-6885 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"AMP PEAK 19(17Q24.1) WILD-TYPE"   "AMP PEAK 19(17Q24.1) MUTATED" 
                    TCGA-EI-7004                     TCGA-F5-6465 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-F5-6571                     TCGA-F5-6702 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-F5-6810                     TCGA-F5-6811 
"AMP PEAK 19(17Q24.1) WILD-TYPE"   "AMP PEAK 19(17Q24.1) MUTATED" 
                    TCGA-F5-6812                     TCGA-F5-6813 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
"AMP PEAK 19(17Q24.1) WILD-TYPE"   "AMP PEAK 19(17Q24.1) MUTATED" 
                    TCGA-G5-6233                     TCGA-G5-6235 
"AMP PEAK 19(17Q24.1) WILD-TYPE"   "AMP PEAK 19(17Q24.1) MUTATED" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"AMP PEAK 19(17Q24.1) WILD-TYPE"   "AMP PEAK 19(17Q24.1) MUTATED" 
                    TCGA-AF-2690                     TCGA-AF-2691 
  "AMP PEAK 19(17Q24.1) MUTATED" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
  "AMP PEAK 19(17Q24.1) MUTATED" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-3575                     TCGA-AG-3581 
  "AMP PEAK 19(17Q24.1) MUTATED"   "AMP PEAK 19(17Q24.1) MUTATED" 
                    TCGA-AG-3582                     TCGA-AG-3583 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"AMP PEAK 19(17Q24.1) WILD-TYPE"   "AMP PEAK 19(17Q24.1) MUTATED" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-4001                     TCGA-AG-4007 
  "AMP PEAK 19(17Q24.1) MUTATED"   "AMP PEAK 19(17Q24.1) MUTATED" 
                    TCGA-AG-4008                     TCGA-AG-4022 
  "AMP PEAK 19(17Q24.1) MUTATED" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
  "AMP PEAK 19(17Q24.1) MUTATED" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
  "AMP PEAK 19(17Q24.1) MUTATED" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
"AMP PEAK 19(17Q24.1) WILD-TYPE"   "AMP PEAK 19(17Q24.1) MUTATED" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"AMP PEAK 19(17Q24.1) WILD-TYPE"   "AMP PEAK 19(17Q24.1) MUTATED" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AH-6544                     TCGA-AH-6547 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
  "AMP PEAK 19(17Q24.1) MUTATED" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AH-6897                     TCGA-AH-6903 
  "AMP PEAK 19(17Q24.1) MUTATED" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
"AMP PEAK 19(17Q24.1) WILD-TYPE"   "AMP PEAK 19(17Q24.1) MUTATED" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-CL-4957                     TCGA-CL-5917 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-CL-5918                     TCGA-DC-4745 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-DC-4749                     TCGA-DC-5337 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
"AMP PEAK 19(17Q24.1) WILD-TYPE"   "AMP PEAK 19(17Q24.1) MUTATED" 
                    TCGA-DC-6155                     TCGA-DC-6156 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-DC-6157                     TCGA-DC-6158 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-DC-6160                     TCGA-DC-6681 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
  "AMP PEAK 19(17Q24.1) MUTATED"   "AMP PEAK 19(17Q24.1) MUTATED" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
  "AMP PEAK 19(17Q24.1) MUTATED" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
  "AMP PEAK 19(17Q24.1) MUTATED" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-EF-5830                     TCGA-EF-5831 
  "AMP PEAK 19(17Q24.1) MUTATED"   "AMP PEAK 19(17Q24.1) MUTATED" 
                    TCGA-EI-6506                     TCGA-EI-6507 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-EI-6510                     TCGA-EI-6511 
  "AMP PEAK 19(17Q24.1) MUTATED" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-EI-6512                     TCGA-EI-6513 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-EI-6514                     TCGA-EI-6881 
  "AMP PEAK 19(17Q24.1) MUTATED" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-EI-6884                     TCGA-EI-6885 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"AMP PEAK 19(17Q24.1) WILD-TYPE"   "AMP PEAK 19(17Q24.1) MUTATED" 
                    TCGA-EI-7004                     TCGA-F5-6465 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-F5-6571                     TCGA-F5-6702 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-F5-6810                     TCGA-F5-6811 
"AMP PEAK 19(17Q24.1) WILD-TYPE"   "AMP PEAK 19(17Q24.1) MUTATED" 
                    TCGA-F5-6812                     TCGA-F5-6813 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
"AMP PEAK 19(17Q24.1) WILD-TYPE"   "AMP PEAK 19(17Q24.1) MUTATED" 
                    TCGA-G5-6233                     TCGA-G5-6235 
"AMP PEAK 19(17Q24.1) WILD-TYPE"   "AMP PEAK 19(17Q24.1) MUTATED" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"AMP PEAK 19(17Q24.1) WILD-TYPE"   "AMP PEAK 19(17Q24.1) MUTATED" 
                    TCGA-AF-2690                     TCGA-AF-2691 
  "AMP PEAK 19(17Q24.1) MUTATED" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
  "AMP PEAK 19(17Q24.1) MUTATED" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-3575                     TCGA-AG-3581 
  "AMP PEAK 19(17Q24.1) MUTATED"   "AMP PEAK 19(17Q24.1) MUTATED" 
                    TCGA-AG-3582                     TCGA-AG-3583 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"AMP PEAK 19(17Q24.1) WILD-TYPE"   "AMP PEAK 19(17Q24.1) MUTATED" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-4001                     TCGA-AG-4007 
  "AMP PEAK 19(17Q24.1) MUTATED"   "AMP PEAK 19(17Q24.1) MUTATED" 
                    TCGA-AG-4008                     TCGA-AG-4022 
  "AMP PEAK 19(17Q24.1) MUTATED" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
  "AMP PEAK 19(17Q24.1) MUTATED" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
  "AMP PEAK 19(17Q24.1) MUTATED" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
"AMP PEAK 19(17Q24.1) WILD-TYPE"   "AMP PEAK 19(17Q24.1) MUTATED" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"AMP PEAK 19(17Q24.1) WILD-TYPE"   "AMP PEAK 19(17Q24.1) MUTATED" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AH-6544                     TCGA-AH-6547 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
  "AMP PEAK 19(17Q24.1) MUTATED" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AH-6897                     TCGA-AH-6903 
  "AMP PEAK 19(17Q24.1) MUTATED" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
"AMP PEAK 19(17Q24.1) WILD-TYPE"   "AMP PEAK 19(17Q24.1) MUTATED" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-CL-4957                     TCGA-CL-5917 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-CL-5918                     TCGA-DC-4745 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-DC-4749                     TCGA-DC-5337 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
"AMP PEAK 19(17Q24.1) WILD-TYPE"   "AMP PEAK 19(17Q24.1) MUTATED" 
                    TCGA-DC-6155                     TCGA-DC-6156 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-DC-6157                     TCGA-DC-6158 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-DC-6160                     TCGA-DC-6681 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
  "AMP PEAK 19(17Q24.1) MUTATED"   "AMP PEAK 19(17Q24.1) MUTATED" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
  "AMP PEAK 19(17Q24.1) MUTATED" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
  "AMP PEAK 19(17Q24.1) MUTATED" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-EF-5830                     TCGA-EF-5831 
  "AMP PEAK 19(17Q24.1) MUTATED"   "AMP PEAK 19(17Q24.1) MUTATED" 
                    TCGA-EI-6506                     TCGA-EI-6507 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-EI-6510                     TCGA-EI-6511 
  "AMP PEAK 19(17Q24.1) MUTATED" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-EI-6512                     TCGA-EI-6513 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-EI-6514                     TCGA-EI-6881 
  "AMP PEAK 19(17Q24.1) MUTATED" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-EI-6884                     TCGA-EI-6885 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"AMP PEAK 19(17Q24.1) WILD-TYPE"   "AMP PEAK 19(17Q24.1) MUTATED" 
                    TCGA-EI-7004                     TCGA-F5-6465 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-F5-6571                     TCGA-F5-6702 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-F5-6810                     TCGA-F5-6811 
"AMP PEAK 19(17Q24.1) WILD-TYPE"   "AMP PEAK 19(17Q24.1) MUTATED" 
                    TCGA-F5-6812                     TCGA-F5-6813 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
"AMP PEAK 19(17Q24.1) WILD-TYPE"   "AMP PEAK 19(17Q24.1) MUTATED" 
                    TCGA-G5-6233                     TCGA-G5-6235 
"AMP PEAK 19(17Q24.1) WILD-TYPE"   "AMP PEAK 19(17Q24.1) MUTATED" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
[1] "hr=" "1.1"
D19V2, continuous
                                vv
clus                             STAGE I STAGE II STAGE IIA STAGE IIB STAGE IIC
  AMP PEAK 19(17Q24.1) MUTATED         5        1        11         1         0
  AMP PEAK 19(17Q24.1) WILD-TYPE      25        7        27         1         2
                                vv
clus                             STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  AMP PEAK 19(17Q24.1) MUTATED           1          0          4          4
  AMP PEAK 19(17Q24.1) WILD-TYPE         4          9         19         10
                                vv
clus                             STAGE IV STAGE IVA
  AMP PEAK 19(17Q24.1) MUTATED          7         3
  AMP PEAK 19(17Q24.1) WILD-TYPE       10         6
D19V3, multiclass
                                vv
clus                             T1 T2 T3 T4
  AMP PEAK 19(17Q24.1) MUTATED    0  7 25  5
  AMP PEAK 19(17Q24.1) WILD-TYPE  9 22 84  9
D19V4, multiclass
    clus
vv   AMP PEAK 19(17Q24.1) MUTATED AMP PEAK 19(17Q24.1) WILD-TYPE
  T1                            0                              9
  T2                            7                             22
  T3                           25                             84
  T4                            5                              9
                                vv
clus                             N0 N1 N2
  AMP PEAK 19(17Q24.1) MUTATED   20  7 10
  AMP PEAK 19(17Q24.1) WILD-TYPE 63 38 22
D19V5, multiclass
    clus
vv   AMP PEAK 19(17Q24.1) MUTATED AMP PEAK 19(17Q24.1) WILD-TYPE
  N0                           20                             63
  N1                            7                             38
  N2                           10                             22
                                vv
clus                             M0 M1 M1A MX
  AMP PEAK 19(17Q24.1) MUTATED   25  9   0  3
  AMP PEAK 19(17Q24.1) WILD-TYPE 98 13   2 10
D19V6, multiclass
     clus
vv    AMP PEAK 19(17Q24.1) MUTATED AMP PEAK 19(17Q24.1) WILD-TYPE
  M0                            25                             98
  M1                             9                             13
  M1A                            0                              2
  MX                             3                             10
D19V7, binary
                                cls
clus                              0  1
  AMP PEAK 19(17Q24.1) MUTATED   17 20
  AMP PEAK 19(17Q24.1) WILD-TYPE 57 68
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 19(17Q24.1) MUTATED     17   20
  AMP PEAK 19(17Q24.1) WILD-TYPE   57   68
        clus
vv       AMP PEAK 19(17Q24.1) MUTATED AMP PEAK 19(17Q24.1) WILD-TYPE
  FEMALE                           17                             57
  MALE                             20                             68
D19V8, binary
                                cls
clus                               0   1
  AMP PEAK 19(17Q24.1) MUTATED    36   0
  AMP PEAK 19(17Q24.1) WILD-TYPE 107  13
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 19(17Q24.1) MUTATED     36    0
  AMP PEAK 19(17Q24.1) WILD-TYPE  107   13
                                clus
vv                               AMP PEAK 19(17Q24.1) MUTATED
  RECTAL ADENOCARCINOMA                                    36
  RECTAL MUCINOUS ADENOCARCINOMA                            0
                                clus
vv                               AMP PEAK 19(17Q24.1) WILD-TYPE
  RECTAL ADENOCARCINOMA                                     107
  RECTAL MUCINOUS ADENOCARCINOMA                             13
D19V9, binary
                                cls
clus                               0   1
  AMP PEAK 19(17Q24.1) MUTATED     0  37
  AMP PEAK 19(17Q24.1) WILD-TYPE   6 119
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 19(17Q24.1) MUTATED      0   37
  AMP PEAK 19(17Q24.1) WILD-TYPE    6  119
     clus
vv    AMP PEAK 19(17Q24.1) MUTATED AMP PEAK 19(17Q24.1) WILD-TYPE
  NO                             0                              6
  YES                           37                            119
                                vv
clus                             R0 R1 R2 RX
  AMP PEAK 19(17Q24.1) MUTATED   26  1  5  0
  AMP PEAK 19(17Q24.1) WILD-TYPE 95  1  7  3
D19V10, multiclass
    clus
vv   AMP PEAK 19(17Q24.1) MUTATED AMP PEAK 19(17Q24.1) WILD-TYPE
  R0                           26                             95
  R1                            1                              1
  R2                            5                              7
  RX                            0                              3
D19V11, continuous

Clustering(20) Variable = AMP PEAK 20(19P13.2) MUTATION ANALYSIS
D20V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 20(19P13.2) MUTATED   22  5
  AMP PEAK 20(19P13.2) WILD-TYPE 95  8
  AMP PEAK 20(19P13.2) MUTATED AMP PEAK 20(19P13.2) WILD-TYPE 
                            27                            103 
  AMP PEAK 20(19P13.2) MUTATED AMP PEAK 20(19P13.2) WILD-TYPE 
                             5                              8 
$`AMP PEAK 20(19P13.2) MUTATED`
TCGA-AF-2690 TCGA-AF-3913 TCGA-AG-3582 TCGA-AG-3878 TCGA-AG-3896 TCGA-AG-3999 
       17.23        10.39         1.02         0.99         1.02         1.02 
TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4022 TCGA-AG-A01L TCGA-AG-A01N TCGA-AG-A026 
        1.02         1.02         0.99        12.00        12.00         1.94 
TCGA-AG-A032 TCGA-DC-4745 TCGA-DC-4749 TCGA-DC-6154 TCGA-DC-6157 TCGA-DC-6682 
       38.01        10.98        11.01        12.00        36.00        13.02 
TCGA-DY-A1DD TCGA-DY-A1DF TCGA-EF-5830 TCGA-EI-6506 TCGA-EI-6512 TCGA-EI-6514 
       57.24        24.13         0.49        20.55        17.69        16.31 
TCGA-EI-6883 TCGA-EI-7002 TCGA-F5-6863 
       11.51        11.97         0.76 

$`AMP PEAK 20(19P13.2) WILD-TYPE`
TCGA-AF-2687 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-2693 TCGA-AF-3400 
       24.13        17.95        10.62        13.55        19.10        12.72 
TCGA-AF-3911 TCGA-AF-4110 TCGA-AF-5654 TCGA-AF-6136 TCGA-AF-6655 TCGA-AF-6672 
       25.02        14.50         8.45        15.35        11.67        10.39 
TCGA-AG-3575 TCGA-AG-3581 TCGA-AG-3583 TCGA-AG-3586 TCGA-AG-3587 TCGA-AG-3599 
       12.00         1.02         2.01         1.02         1.02         0.99 
TCGA-AG-3605 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3731 TCGA-AG-3742 TCGA-AG-3883 
        0.99         7.96         0.95         1.02         0.99         1.02 
TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-4008 TCGA-AG-A002 
        0.92         1.02         0.99         0.99         1.02        20.94 
TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 
       13.91         6.02        25.94        23.01        17.03        15.91 
TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01J TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 
       13.02         1.02         1.02        70.03        63.98        10.98 
TCGA-AG-A023 TCGA-AG-A025 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AH-6544 
       51.98        49.94        38.93        61.94        40.96         0.49 
TCGA-AH-6547 TCGA-AH-6643 TCGA-AH-6644 TCGA-AH-6897 TCGA-AH-6903 TCGA-BM-6198 
        1.45         0.69         0.72         4.60         1.81        10.19 
TCGA-CI-6619 TCGA-CI-6620 TCGA-CI-6622 TCGA-CI-6623 TCGA-CI-6624 TCGA-CL-4957 
        6.02         6.02         6.94         9.37         4.70        13.97 
TCGA-CL-5917 TCGA-CL-5918 TCGA-DC-5337 TCGA-DC-5869 TCGA-DC-6155 TCGA-DC-6156 
       60.00         7.99        15.02        12.99        14.01        15.02 
TCGA-DC-6158 TCGA-DC-6160 TCGA-DC-6681 TCGA-DC-6683 TCGA-DT-5265 TCGA-DY-A0XA 
        6.97        30.05        12.95        10.06         5.29       126.41 
TCGA-DY-A1DC TCGA-DY-A1DE TCGA-DY-A1DG TCGA-DY-A1H8 TCGA-EF-5831 TCGA-EI-6507 
       41.33       129.27        51.48        32.58         2.40        19.96 
TCGA-EI-6508 TCGA-EI-6509 TCGA-EI-6510 TCGA-EI-6511 TCGA-EI-6513 TCGA-EI-6881 
       20.91        17.00        18.28        15.85        16.34        16.37 
TCGA-EI-6882 TCGA-EI-6884 TCGA-EI-6885 TCGA-EI-6917 TCGA-EI-7004 TCGA-F5-6465 
        8.61        10.78        13.61        17.46         8.45         3.39 
TCGA-F5-6571 TCGA-F5-6702 TCGA-F5-6810 TCGA-F5-6811 TCGA-F5-6812 TCGA-F5-6813 
        0.85         2.17         0.39         1.02         0.66         0.69 
TCGA-F5-6814 TCGA-F5-6861 TCGA-F5-6864 TCGA-G5-6233 TCGA-G5-6235 TCGA-G5-6572 
        0.53         1.08         0.46        18.25        55.76        47.08 
TCGA-G5-6641 
       26.43 

  AMP PEAK 20(19P13.2) MUTATED AMP PEAK 20(19P13.2) WILD-TYPE 
                          0.49                           0.39 
  AMP PEAK 20(19P13.2) MUTATED AMP PEAK 20(19P13.2) WILD-TYPE 
                         57.24                         129.27 
  AMP PEAK 20(19P13.2) MUTATED AMP PEAK 20(19P13.2) WILD-TYPE 
                         11.51                          10.78 
[1] "0.5 - 57.2 (11.5)"  "0.4 - 129.3 (10.8)"
                    TCGA-AF-2687                     TCGA-AF-2689 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
  "AMP PEAK 20(19P13.2) MUTATED" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
  "AMP PEAK 20(19P13.2) MUTATED" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-3575                     TCGA-AG-3581 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-3582                     TCGA-AG-3583 
  "AMP PEAK 20(19P13.2) MUTATED" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-3878                     TCGA-AG-3883 
  "AMP PEAK 20(19P13.2) MUTATED" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
  "AMP PEAK 20(19P13.2) MUTATED"   "AMP PEAK 20(19P13.2) MUTATED" 
                    TCGA-AG-4001                     TCGA-AG-4007 
  "AMP PEAK 20(19P13.2) MUTATED"   "AMP PEAK 20(19P13.2) MUTATED" 
                    TCGA-AG-4008                     TCGA-AG-4022 
"AMP PEAK 20(19P13.2) WILD-TYPE"   "AMP PEAK 20(19P13.2) MUTATED" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
  "AMP PEAK 20(19P13.2) MUTATED"   "AMP PEAK 20(19P13.2) MUTATED" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"AMP PEAK 20(19P13.2) WILD-TYPE"   "AMP PEAK 20(19P13.2) MUTATED" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
"AMP PEAK 20(19P13.2) WILD-TYPE"   "AMP PEAK 20(19P13.2) MUTATED" 
                    TCGA-AH-6544                     TCGA-AH-6547 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AH-6897                     TCGA-AH-6903 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-CL-4957                     TCGA-CL-5917 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-CL-5918                     TCGA-DC-4745 
"AMP PEAK 20(19P13.2) WILD-TYPE"   "AMP PEAK 20(19P13.2) MUTATED" 
                    TCGA-DC-4749                     TCGA-DC-5337 
  "AMP PEAK 20(19P13.2) MUTATED" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
"AMP PEAK 20(19P13.2) WILD-TYPE"   "AMP PEAK 20(19P13.2) MUTATED" 
                    TCGA-DC-6155                     TCGA-DC-6156 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-DC-6157                     TCGA-DC-6158 
  "AMP PEAK 20(19P13.2) MUTATED" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-DC-6160                     TCGA-DC-6681 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
  "AMP PEAK 20(19P13.2) MUTATED" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
"AMP PEAK 20(19P13.2) WILD-TYPE"   "AMP PEAK 20(19P13.2) MUTATED" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
"AMP PEAK 20(19P13.2) WILD-TYPE"   "AMP PEAK 20(19P13.2) MUTATED" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-EF-5830                     TCGA-EF-5831 
  "AMP PEAK 20(19P13.2) MUTATED" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-EI-6506                     TCGA-EI-6507 
  "AMP PEAK 20(19P13.2) MUTATED" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-EI-6512                     TCGA-EI-6513 
  "AMP PEAK 20(19P13.2) MUTATED" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-EI-6514                     TCGA-EI-6881 
  "AMP PEAK 20(19P13.2) MUTATED" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"AMP PEAK 20(19P13.2) WILD-TYPE"   "AMP PEAK 20(19P13.2) MUTATED" 
                    TCGA-EI-6884                     TCGA-EI-6885 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"AMP PEAK 20(19P13.2) WILD-TYPE"   "AMP PEAK 20(19P13.2) MUTATED" 
                    TCGA-EI-7004                     TCGA-F5-6465 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-F5-6571                     TCGA-F5-6702 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-F5-6810                     TCGA-F5-6811 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-F5-6812                     TCGA-F5-6813 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
  "AMP PEAK 20(19P13.2) MUTATED" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-G5-6233                     TCGA-G5-6235 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
  "AMP PEAK 20(19P13.2) MUTATED" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
  "AMP PEAK 20(19P13.2) MUTATED" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-3575                     TCGA-AG-3581 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-3582                     TCGA-AG-3583 
  "AMP PEAK 20(19P13.2) MUTATED" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-3878                     TCGA-AG-3883 
  "AMP PEAK 20(19P13.2) MUTATED" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
  "AMP PEAK 20(19P13.2) MUTATED"   "AMP PEAK 20(19P13.2) MUTATED" 
                    TCGA-AG-4001                     TCGA-AG-4007 
  "AMP PEAK 20(19P13.2) MUTATED"   "AMP PEAK 20(19P13.2) MUTATED" 
                    TCGA-AG-4008                     TCGA-AG-4022 
"AMP PEAK 20(19P13.2) WILD-TYPE"   "AMP PEAK 20(19P13.2) MUTATED" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
  "AMP PEAK 20(19P13.2) MUTATED"   "AMP PEAK 20(19P13.2) MUTATED" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"AMP PEAK 20(19P13.2) WILD-TYPE"   "AMP PEAK 20(19P13.2) MUTATED" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
"AMP PEAK 20(19P13.2) WILD-TYPE"   "AMP PEAK 20(19P13.2) MUTATED" 
                    TCGA-AH-6544                     TCGA-AH-6547 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AH-6897                     TCGA-AH-6903 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-CL-4957                     TCGA-CL-5917 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-CL-5918                     TCGA-DC-4745 
"AMP PEAK 20(19P13.2) WILD-TYPE"   "AMP PEAK 20(19P13.2) MUTATED" 
                    TCGA-DC-4749                     TCGA-DC-5337 
  "AMP PEAK 20(19P13.2) MUTATED" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
"AMP PEAK 20(19P13.2) WILD-TYPE"   "AMP PEAK 20(19P13.2) MUTATED" 
                    TCGA-DC-6155                     TCGA-DC-6156 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-DC-6157                     TCGA-DC-6158 
  "AMP PEAK 20(19P13.2) MUTATED" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-DC-6160                     TCGA-DC-6681 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
  "AMP PEAK 20(19P13.2) MUTATED" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
"AMP PEAK 20(19P13.2) WILD-TYPE"   "AMP PEAK 20(19P13.2) MUTATED" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
"AMP PEAK 20(19P13.2) WILD-TYPE"   "AMP PEAK 20(19P13.2) MUTATED" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-EF-5830                     TCGA-EF-5831 
  "AMP PEAK 20(19P13.2) MUTATED" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-EI-6506                     TCGA-EI-6507 
  "AMP PEAK 20(19P13.2) MUTATED" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-EI-6512                     TCGA-EI-6513 
  "AMP PEAK 20(19P13.2) MUTATED" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-EI-6514                     TCGA-EI-6881 
  "AMP PEAK 20(19P13.2) MUTATED" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"AMP PEAK 20(19P13.2) WILD-TYPE"   "AMP PEAK 20(19P13.2) MUTATED" 
                    TCGA-EI-6884                     TCGA-EI-6885 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"AMP PEAK 20(19P13.2) WILD-TYPE"   "AMP PEAK 20(19P13.2) MUTATED" 
                    TCGA-EI-7004                     TCGA-F5-6465 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-F5-6571                     TCGA-F5-6702 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-F5-6810                     TCGA-F5-6811 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-F5-6812                     TCGA-F5-6813 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
  "AMP PEAK 20(19P13.2) MUTATED" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-G5-6233                     TCGA-G5-6235 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
  "AMP PEAK 20(19P13.2) MUTATED" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
  "AMP PEAK 20(19P13.2) MUTATED" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-3575                     TCGA-AG-3581 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-3582                     TCGA-AG-3583 
  "AMP PEAK 20(19P13.2) MUTATED" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-3878                     TCGA-AG-3883 
  "AMP PEAK 20(19P13.2) MUTATED" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
  "AMP PEAK 20(19P13.2) MUTATED"   "AMP PEAK 20(19P13.2) MUTATED" 
                    TCGA-AG-4001                     TCGA-AG-4007 
  "AMP PEAK 20(19P13.2) MUTATED"   "AMP PEAK 20(19P13.2) MUTATED" 
                    TCGA-AG-4008                     TCGA-AG-4022 
"AMP PEAK 20(19P13.2) WILD-TYPE"   "AMP PEAK 20(19P13.2) MUTATED" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
  "AMP PEAK 20(19P13.2) MUTATED"   "AMP PEAK 20(19P13.2) MUTATED" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"AMP PEAK 20(19P13.2) WILD-TYPE"   "AMP PEAK 20(19P13.2) MUTATED" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
"AMP PEAK 20(19P13.2) WILD-TYPE"   "AMP PEAK 20(19P13.2) MUTATED" 
                    TCGA-AH-6544                     TCGA-AH-6547 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AH-6897                     TCGA-AH-6903 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-CL-4957                     TCGA-CL-5917 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-CL-5918                     TCGA-DC-4745 
"AMP PEAK 20(19P13.2) WILD-TYPE"   "AMP PEAK 20(19P13.2) MUTATED" 
                    TCGA-DC-4749                     TCGA-DC-5337 
  "AMP PEAK 20(19P13.2) MUTATED" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
"AMP PEAK 20(19P13.2) WILD-TYPE"   "AMP PEAK 20(19P13.2) MUTATED" 
                    TCGA-DC-6155                     TCGA-DC-6156 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-DC-6157                     TCGA-DC-6158 
  "AMP PEAK 20(19P13.2) MUTATED" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-DC-6160                     TCGA-DC-6681 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
  "AMP PEAK 20(19P13.2) MUTATED" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
"AMP PEAK 20(19P13.2) WILD-TYPE"   "AMP PEAK 20(19P13.2) MUTATED" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
"AMP PEAK 20(19P13.2) WILD-TYPE"   "AMP PEAK 20(19P13.2) MUTATED" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-EF-5830                     TCGA-EF-5831 
  "AMP PEAK 20(19P13.2) MUTATED" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-EI-6506                     TCGA-EI-6507 
  "AMP PEAK 20(19P13.2) MUTATED" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-EI-6512                     TCGA-EI-6513 
  "AMP PEAK 20(19P13.2) MUTATED" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-EI-6514                     TCGA-EI-6881 
  "AMP PEAK 20(19P13.2) MUTATED" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"AMP PEAK 20(19P13.2) WILD-TYPE"   "AMP PEAK 20(19P13.2) MUTATED" 
                    TCGA-EI-6884                     TCGA-EI-6885 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"AMP PEAK 20(19P13.2) WILD-TYPE"   "AMP PEAK 20(19P13.2) MUTATED" 
                    TCGA-EI-7004                     TCGA-F5-6465 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-F5-6571                     TCGA-F5-6702 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-F5-6810                     TCGA-F5-6811 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-F5-6812                     TCGA-F5-6813 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
  "AMP PEAK 20(19P13.2) MUTATED" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-G5-6233                     TCGA-G5-6235 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
[1] "hr=" "3.8"
D20V2, continuous
                                vv
clus                             STAGE I STAGE II STAGE IIA STAGE IIB STAGE IIC
  AMP PEAK 20(19P13.2) MUTATED         4        2         7         1         1
  AMP PEAK 20(19P13.2) WILD-TYPE      26        6        31         1         1
                                vv
clus                             STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  AMP PEAK 20(19P13.2) MUTATED           1          0          7          5
  AMP PEAK 20(19P13.2) WILD-TYPE         4          9         16          9
                                vv
clus                             STAGE IV STAGE IVA
  AMP PEAK 20(19P13.2) MUTATED          4         1
  AMP PEAK 20(19P13.2) WILD-TYPE       13         8
D20V3, multiclass
                                vv
clus                             T1 T2 T3 T4
  AMP PEAK 20(19P13.2) MUTATED    0  5 24  5
  AMP PEAK 20(19P13.2) WILD-TYPE  9 24 85  9
D20V4, multiclass
    clus
vv   AMP PEAK 20(19P13.2) MUTATED AMP PEAK 20(19P13.2) WILD-TYPE
  T1                            0                              9
  T2                            5                             24
  T3                           24                             85
  T4                            5                              9
                                vv
clus                             N0 N1 N2
  AMP PEAK 20(19P13.2) MUTATED   16 10  8
  AMP PEAK 20(19P13.2) WILD-TYPE 67 35 24
D20V5, multiclass
    clus
vv   AMP PEAK 20(19P13.2) MUTATED AMP PEAK 20(19P13.2) WILD-TYPE
  N0                           16                             67
  N1                           10                             35
  N2                            8                             24
                                vv
clus                             M0 M1 M1A MX
  AMP PEAK 20(19P13.2) MUTATED   27  6   0  1
  AMP PEAK 20(19P13.2) WILD-TYPE 96 16   2 12
D20V6, multiclass
     clus
vv    AMP PEAK 20(19P13.2) MUTATED AMP PEAK 20(19P13.2) WILD-TYPE
  M0                            27                             96
  M1                             6                             16
  M1A                            0                              2
  MX                             1                             12
D20V7, binary
                                cls
clus                              0  1
  AMP PEAK 20(19P13.2) MUTATED   17 17
  AMP PEAK 20(19P13.2) WILD-TYPE 57 71
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 20(19P13.2) MUTATED     17   17
  AMP PEAK 20(19P13.2) WILD-TYPE   57   71
        clus
vv       AMP PEAK 20(19P13.2) MUTATED AMP PEAK 20(19P13.2) WILD-TYPE
  FEMALE                           17                             57
  MALE                             17                             71
D20V8, binary
                                cls
clus                               0   1
  AMP PEAK 20(19P13.2) MUTATED    34   0
  AMP PEAK 20(19P13.2) WILD-TYPE 109  13
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 20(19P13.2) MUTATED     34    0
  AMP PEAK 20(19P13.2) WILD-TYPE  109   13
                                clus
vv                               AMP PEAK 20(19P13.2) MUTATED
  RECTAL ADENOCARCINOMA                                    34
  RECTAL MUCINOUS ADENOCARCINOMA                            0
                                clus
vv                               AMP PEAK 20(19P13.2) WILD-TYPE
  RECTAL ADENOCARCINOMA                                     109
  RECTAL MUCINOUS ADENOCARCINOMA                             13
D20V9, binary
                                cls
clus                               0   1
  AMP PEAK 20(19P13.2) MUTATED     0  34
  AMP PEAK 20(19P13.2) WILD-TYPE   6 122
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 20(19P13.2) MUTATED      0   34
  AMP PEAK 20(19P13.2) WILD-TYPE    6  122
     clus
vv    AMP PEAK 20(19P13.2) MUTATED AMP PEAK 20(19P13.2) WILD-TYPE
  NO                             0                              6
  YES                           34                            122
                                vv
clus                             R0 R1 R2 RX
  AMP PEAK 20(19P13.2) MUTATED   27  1  3  0
  AMP PEAK 20(19P13.2) WILD-TYPE 94  1  9  3
D20V10, multiclass
    clus
vv   AMP PEAK 20(19P13.2) MUTATED AMP PEAK 20(19P13.2) WILD-TYPE
  R0                           27                             94
  R1                            1                              1
  R2                            3                              9
  RX                            0                              3
D20V11, continuous

Clustering(21) Variable = AMP PEAK 21(20Q11.21) MUTATION ANALYSIS
D21V1, survival
                                 sevent
clus2                               0   1
  AMP PEAK 21(20Q11.21) MUTATED   104  13
  AMP PEAK 21(20Q11.21) WILD-TYPE  13   0
  AMP PEAK 21(20Q11.21) MUTATED AMP PEAK 21(20Q11.21) WILD-TYPE 
                            117                              13 
  AMP PEAK 21(20Q11.21) MUTATED AMP PEAK 21(20Q11.21) WILD-TYPE 
                             13                               0 
$`AMP PEAK 21(20Q11.21) MUTATED`
TCGA-AF-2687 TCGA-AF-2689 TCGA-AF-2690 TCGA-AF-2691 TCGA-AF-2693 TCGA-AF-3911 
       24.13        17.95        17.23        10.62        19.10        25.02 
TCGA-AF-3913 TCGA-AF-4110 TCGA-AF-5654 TCGA-AF-6136 TCGA-AF-6655 TCGA-AF-6672 
       10.39        14.50         8.45        15.35        11.67        10.39 
TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3586 TCGA-AG-3587 TCGA-AG-3599 
        1.02         1.02         2.01         1.02         1.02         0.99 
TCGA-AG-3605 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3731 TCGA-AG-3742 TCGA-AG-3878 
        0.99         7.96         0.95         1.02         0.99         0.99 
TCGA-AG-3883 TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3896 TCGA-AG-3999 
        1.02         0.92         0.99         0.99         1.02         1.02 
TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-4022 TCGA-AG-A008 TCGA-AG-A00C 
        1.02         1.02         1.02         0.99        13.91         6.02 
TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 
       25.94        23.01        17.03        15.91        13.02         1.02 
TCGA-AG-A01J TCGA-AG-A01L TCGA-AG-A01N TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 
        1.02        12.00        12.00        70.03        63.98        10.98 
TCGA-AG-A023 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02X TCGA-AG-A032 TCGA-AH-6544 
       51.98         1.94        38.93        40.96        38.01         0.49 
TCGA-AH-6547 TCGA-AH-6643 TCGA-AH-6644 TCGA-AH-6897 TCGA-AH-6903 TCGA-BM-6198 
        1.45         0.69         0.72         4.60         1.81        10.19 
TCGA-CI-6619 TCGA-CI-6622 TCGA-CI-6623 TCGA-CI-6624 TCGA-CL-4957 TCGA-CL-5917 
        6.02         6.94         9.37         4.70        13.97        60.00 
TCGA-CL-5918 TCGA-DC-4745 TCGA-DC-4749 TCGA-DC-5337 TCGA-DC-5869 TCGA-DC-6154 
        7.99        10.98        11.01        15.02        12.99        12.00 
TCGA-DC-6155 TCGA-DC-6156 TCGA-DC-6157 TCGA-DC-6158 TCGA-DC-6160 TCGA-DC-6681 
       14.01        15.02        36.00         6.97        30.05        12.95 
TCGA-DC-6682 TCGA-DC-6683 TCGA-DY-A0XA TCGA-DY-A1DC TCGA-DY-A1DD TCGA-DY-A1DE 
       13.02        10.06       126.41        41.33        57.24       129.27 
TCGA-DY-A1DF TCGA-DY-A1DG TCGA-DY-A1H8 TCGA-EF-5830 TCGA-EF-5831 TCGA-EI-6506 
       24.13        51.48        32.58         0.49         2.40        20.55 
TCGA-EI-6508 TCGA-EI-6509 TCGA-EI-6510 TCGA-EI-6511 TCGA-EI-6512 TCGA-EI-6513 
       20.91        17.00        18.28        15.85        17.69        16.34 
TCGA-EI-6514 TCGA-EI-6881 TCGA-EI-6883 TCGA-EI-6884 TCGA-EI-6885 TCGA-EI-7002 
       16.31        16.37        11.51        10.78        13.61        11.97 
TCGA-F5-6465 TCGA-F5-6571 TCGA-F5-6702 TCGA-F5-6810 TCGA-F5-6811 TCGA-F5-6812 
        3.39         0.85         2.17         0.39         1.02         0.66 
TCGA-F5-6813 TCGA-F5-6814 TCGA-F5-6861 TCGA-F5-6863 TCGA-F5-6864 TCGA-G5-6233 
        0.69         0.53         1.08         0.76         0.46        18.25 
TCGA-G5-6235 TCGA-G5-6572 TCGA-G5-6641 
       55.76        47.08        26.43 

$`AMP PEAK 21(20Q11.21) WILD-TYPE`
TCGA-AF-2692 TCGA-AF-3400 TCGA-AG-3575 TCGA-AG-3892 TCGA-AG-A002 TCGA-AG-A025 
       13.55        12.72        12.00         1.02        20.94        49.94 
TCGA-AG-A02N TCGA-CI-6620 TCGA-DT-5265 TCGA-EI-6507 TCGA-EI-6882 TCGA-EI-6917 
       61.94         6.02         5.29        19.96         8.61        17.46 
TCGA-EI-7004 
        8.45 

  AMP PEAK 21(20Q11.21) MUTATED AMP PEAK 21(20Q11.21) WILD-TYPE 
                           0.39                            1.02 
  AMP PEAK 21(20Q11.21) MUTATED AMP PEAK 21(20Q11.21) WILD-TYPE 
                         129.27                           61.94 
  AMP PEAK 21(20Q11.21) MUTATED AMP PEAK 21(20Q11.21) WILD-TYPE 
                          10.98                           12.72 
[1] "0.4 - 129.3 (11.0)" "1.0 - 61.9 (12.7)" 
                     TCGA-AF-2687                      TCGA-AF-2689 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AF-2690                      TCGA-AF-2691 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AF-2692                      TCGA-AF-2693 
"AMP PEAK 21(20Q11.21) WILD-TYPE"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AF-3400                      TCGA-AF-3911 
"AMP PEAK 21(20Q11.21) WILD-TYPE"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AF-3913                      TCGA-AF-4110 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AF-5654                      TCGA-AF-6136 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AF-6655                      TCGA-AF-6672 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AG-3575                      TCGA-AG-3581 
"AMP PEAK 21(20Q11.21) WILD-TYPE"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AG-3582                      TCGA-AG-3583 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AG-3586                      TCGA-AG-3587 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AG-3599                      TCGA-AG-3605 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AG-3726                      TCGA-AG-3727 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AG-3731                      TCGA-AG-3742 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AG-3878                      TCGA-AG-3883 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AG-3887                      TCGA-AG-3892 
  "AMP PEAK 21(20Q11.21) MUTATED" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-AG-3893                      TCGA-AG-3894 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AG-3896                      TCGA-AG-3999 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AG-4001                      TCGA-AG-4007 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AG-4008                      TCGA-AG-4022 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AG-A002                      TCGA-AG-A008 
"AMP PEAK 21(20Q11.21) WILD-TYPE"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AG-A00C                      TCGA-AG-A00H 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AG-A00Y                      TCGA-AG-A011 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AG-A014                      TCGA-AG-A015 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AG-A016                      TCGA-AG-A01J 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AG-A01L                      TCGA-AG-A01N 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AG-A01W                      TCGA-AG-A01Y 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AG-A020                      TCGA-AG-A023 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AG-A025                      TCGA-AG-A026 
"AMP PEAK 21(20Q11.21) WILD-TYPE"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AG-A02G                      TCGA-AG-A02N 
  "AMP PEAK 21(20Q11.21) MUTATED" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-AG-A02X                      TCGA-AG-A032 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AH-6544                      TCGA-AH-6547 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AH-6643                      TCGA-AH-6644 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AH-6897                      TCGA-AH-6903 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-BM-6198                      TCGA-CI-6619 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-CI-6620                      TCGA-CI-6622 
"AMP PEAK 21(20Q11.21) WILD-TYPE"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-CI-6623                      TCGA-CI-6624 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-CL-4957                      TCGA-CL-5917 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-CL-5918                      TCGA-DC-4745 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-DC-4749                      TCGA-DC-5337 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-DC-5869                      TCGA-DC-6154 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-DC-6155                      TCGA-DC-6156 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-DC-6157                      TCGA-DC-6158 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-DC-6160                      TCGA-DC-6681 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-DC-6682                      TCGA-DC-6683 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-DT-5265                      TCGA-DY-A0XA 
"AMP PEAK 21(20Q11.21) WILD-TYPE"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-DY-A1DC                      TCGA-DY-A1DD 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-DY-A1DE                      TCGA-DY-A1DF 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-DY-A1DG                      TCGA-DY-A1H8 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-EF-5830                      TCGA-EF-5831 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-EI-6506                      TCGA-EI-6507 
  "AMP PEAK 21(20Q11.21) MUTATED" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-EI-6508                      TCGA-EI-6509 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-EI-6510                      TCGA-EI-6511 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-EI-6512                      TCGA-EI-6513 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-EI-6514                      TCGA-EI-6881 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-EI-6882                      TCGA-EI-6883 
"AMP PEAK 21(20Q11.21) WILD-TYPE"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-EI-6884                      TCGA-EI-6885 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-EI-6917                      TCGA-EI-7002 
"AMP PEAK 21(20Q11.21) WILD-TYPE"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-EI-7004                      TCGA-F5-6465 
"AMP PEAK 21(20Q11.21) WILD-TYPE"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-F5-6571                      TCGA-F5-6702 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-F5-6810                      TCGA-F5-6811 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-F5-6812                      TCGA-F5-6813 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-F5-6814                      TCGA-F5-6861 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-F5-6863                      TCGA-F5-6864 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-G5-6233                      TCGA-G5-6235 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-G5-6572                      TCGA-G5-6641 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AF-2687                      TCGA-AF-2689 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AF-2690                      TCGA-AF-2691 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AF-2692                      TCGA-AF-2693 
"AMP PEAK 21(20Q11.21) WILD-TYPE"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AF-3400                      TCGA-AF-3911 
"AMP PEAK 21(20Q11.21) WILD-TYPE"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AF-3913                      TCGA-AF-4110 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AF-5654                      TCGA-AF-6136 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AF-6655                      TCGA-AF-6672 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AG-3575                      TCGA-AG-3581 
"AMP PEAK 21(20Q11.21) WILD-TYPE"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AG-3582                      TCGA-AG-3583 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AG-3586                      TCGA-AG-3587 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AG-3599                      TCGA-AG-3605 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AG-3726                      TCGA-AG-3727 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AG-3731                      TCGA-AG-3742 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AG-3878                      TCGA-AG-3883 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AG-3887                      TCGA-AG-3892 
  "AMP PEAK 21(20Q11.21) MUTATED" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-AG-3893                      TCGA-AG-3894 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AG-3896                      TCGA-AG-3999 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AG-4001                      TCGA-AG-4007 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AG-4008                      TCGA-AG-4022 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AG-A002                      TCGA-AG-A008 
"AMP PEAK 21(20Q11.21) WILD-TYPE"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AG-A00C                      TCGA-AG-A00H 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AG-A00Y                      TCGA-AG-A011 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AG-A014                      TCGA-AG-A015 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AG-A016                      TCGA-AG-A01J 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AG-A01L                      TCGA-AG-A01N 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AG-A01W                      TCGA-AG-A01Y 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AG-A020                      TCGA-AG-A023 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AG-A025                      TCGA-AG-A026 
"AMP PEAK 21(20Q11.21) WILD-TYPE"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AG-A02G                      TCGA-AG-A02N 
  "AMP PEAK 21(20Q11.21) MUTATED" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-AG-A02X                      TCGA-AG-A032 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AH-6544                      TCGA-AH-6547 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AH-6643                      TCGA-AH-6644 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AH-6897                      TCGA-AH-6903 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-BM-6198                      TCGA-CI-6619 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-CI-6620                      TCGA-CI-6622 
"AMP PEAK 21(20Q11.21) WILD-TYPE"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-CI-6623                      TCGA-CI-6624 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-CL-4957                      TCGA-CL-5917 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-CL-5918                      TCGA-DC-4745 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-DC-4749                      TCGA-DC-5337 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-DC-5869                      TCGA-DC-6154 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-DC-6155                      TCGA-DC-6156 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-DC-6157                      TCGA-DC-6158 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-DC-6160                      TCGA-DC-6681 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-DC-6682                      TCGA-DC-6683 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-DT-5265                      TCGA-DY-A0XA 
"AMP PEAK 21(20Q11.21) WILD-TYPE"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-DY-A1DC                      TCGA-DY-A1DD 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-DY-A1DE                      TCGA-DY-A1DF 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-DY-A1DG                      TCGA-DY-A1H8 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-EF-5830                      TCGA-EF-5831 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-EI-6506                      TCGA-EI-6507 
  "AMP PEAK 21(20Q11.21) MUTATED" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-EI-6508                      TCGA-EI-6509 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-EI-6510                      TCGA-EI-6511 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-EI-6512                      TCGA-EI-6513 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-EI-6514                      TCGA-EI-6881 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-EI-6882                      TCGA-EI-6883 
"AMP PEAK 21(20Q11.21) WILD-TYPE"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-EI-6884                      TCGA-EI-6885 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-EI-6917                      TCGA-EI-7002 
"AMP PEAK 21(20Q11.21) WILD-TYPE"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-EI-7004                      TCGA-F5-6465 
"AMP PEAK 21(20Q11.21) WILD-TYPE"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-F5-6571                      TCGA-F5-6702 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-F5-6810                      TCGA-F5-6811 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-F5-6812                      TCGA-F5-6813 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-F5-6814                      TCGA-F5-6861 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-F5-6863                      TCGA-F5-6864 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-G5-6233                      TCGA-G5-6235 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-G5-6572                      TCGA-G5-6641 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AF-2687                      TCGA-AF-2689 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AF-2690                      TCGA-AF-2691 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AF-2692                      TCGA-AF-2693 
"AMP PEAK 21(20Q11.21) WILD-TYPE"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AF-3400                      TCGA-AF-3911 
"AMP PEAK 21(20Q11.21) WILD-TYPE"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AF-3913                      TCGA-AF-4110 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AF-5654                      TCGA-AF-6136 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AF-6655                      TCGA-AF-6672 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AG-3575                      TCGA-AG-3581 
"AMP PEAK 21(20Q11.21) WILD-TYPE"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AG-3582                      TCGA-AG-3583 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AG-3586                      TCGA-AG-3587 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AG-3599                      TCGA-AG-3605 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AG-3726                      TCGA-AG-3727 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AG-3731                      TCGA-AG-3742 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AG-3878                      TCGA-AG-3883 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AG-3887                      TCGA-AG-3892 
  "AMP PEAK 21(20Q11.21) MUTATED" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-AG-3893                      TCGA-AG-3894 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AG-3896                      TCGA-AG-3999 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AG-4001                      TCGA-AG-4007 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AG-4008                      TCGA-AG-4022 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AG-A002                      TCGA-AG-A008 
"AMP PEAK 21(20Q11.21) WILD-TYPE"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AG-A00C                      TCGA-AG-A00H 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AG-A00Y                      TCGA-AG-A011 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AG-A014                      TCGA-AG-A015 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AG-A016                      TCGA-AG-A01J 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AG-A01L                      TCGA-AG-A01N 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AG-A01W                      TCGA-AG-A01Y 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AG-A020                      TCGA-AG-A023 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AG-A025                      TCGA-AG-A026 
"AMP PEAK 21(20Q11.21) WILD-TYPE"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AG-A02G                      TCGA-AG-A02N 
  "AMP PEAK 21(20Q11.21) MUTATED" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-AG-A02X                      TCGA-AG-A032 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AH-6544                      TCGA-AH-6547 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AH-6643                      TCGA-AH-6644 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-AH-6897                      TCGA-AH-6903 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-BM-6198                      TCGA-CI-6619 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-CI-6620                      TCGA-CI-6622 
"AMP PEAK 21(20Q11.21) WILD-TYPE"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-CI-6623                      TCGA-CI-6624 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-CL-4957                      TCGA-CL-5917 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-CL-5918                      TCGA-DC-4745 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-DC-4749                      TCGA-DC-5337 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-DC-5869                      TCGA-DC-6154 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-DC-6155                      TCGA-DC-6156 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-DC-6157                      TCGA-DC-6158 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-DC-6160                      TCGA-DC-6681 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-DC-6682                      TCGA-DC-6683 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-DT-5265                      TCGA-DY-A0XA 
"AMP PEAK 21(20Q11.21) WILD-TYPE"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-DY-A1DC                      TCGA-DY-A1DD 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-DY-A1DE                      TCGA-DY-A1DF 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-DY-A1DG                      TCGA-DY-A1H8 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-EF-5830                      TCGA-EF-5831 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-EI-6506                      TCGA-EI-6507 
  "AMP PEAK 21(20Q11.21) MUTATED" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-EI-6508                      TCGA-EI-6509 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-EI-6510                      TCGA-EI-6511 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-EI-6512                      TCGA-EI-6513 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-EI-6514                      TCGA-EI-6881 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-EI-6882                      TCGA-EI-6883 
"AMP PEAK 21(20Q11.21) WILD-TYPE"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-EI-6884                      TCGA-EI-6885 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-EI-6917                      TCGA-EI-7002 
"AMP PEAK 21(20Q11.21) WILD-TYPE"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-EI-7004                      TCGA-F5-6465 
"AMP PEAK 21(20Q11.21) WILD-TYPE"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-F5-6571                      TCGA-F5-6702 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-F5-6810                      TCGA-F5-6811 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-F5-6812                      TCGA-F5-6813 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-F5-6814                      TCGA-F5-6861 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-F5-6863                      TCGA-F5-6864 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-G5-6233                      TCGA-G5-6235 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-G5-6572                      TCGA-G5-6641 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
[1] "hr="     "2.2e+08"
D21V2, continuous
                                 vv
clus                              STAGE I STAGE II STAGE IIA STAGE IIB
  AMP PEAK 21(20Q11.21) MUTATED        26        5        31         2
  AMP PEAK 21(20Q11.21) WILD-TYPE       4        3         7         0
                                 vv
clus                              STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  AMP PEAK 21(20Q11.21) MUTATED           2         5          8         23
  AMP PEAK 21(20Q11.21) WILD-TYPE         0         0          1          0
                                 vv
clus                              STAGE IIIC STAGE IV STAGE IVA
  AMP PEAK 21(20Q11.21) MUTATED           13       16         7
  AMP PEAK 21(20Q11.21) WILD-TYPE          1        1         2
D21V3, multiclass
                                 vv
clus                              T1 T2 T3 T4
  AMP PEAK 21(20Q11.21) MUTATED    7 27 95 13
  AMP PEAK 21(20Q11.21) WILD-TYPE  2  2 14  1
D21V4, multiclass
    clus
vv   AMP PEAK 21(20Q11.21) MUTATED AMP PEAK 21(20Q11.21) WILD-TYPE
  T1                             7                               2
  T2                            27                               2
  T3                            95                              14
  T4                            13                               1
                                 vv
clus                              N0 N1 N2
  AMP PEAK 21(20Q11.21) MUTATED   69 43 29
  AMP PEAK 21(20Q11.21) WILD-TYPE 14  2  3
D21V5, multiclass
    clus
vv   AMP PEAK 21(20Q11.21) MUTATED AMP PEAK 21(20Q11.21) WILD-TYPE
  N0                            69                              14
  N1                            43                               2
  N2                            29                               3
                                 vv
clus                               M0  M1 M1A  MX
  AMP PEAK 21(20Q11.21) MUTATED   106  20   2  13
  AMP PEAK 21(20Q11.21) WILD-TYPE  17   2   0   0
D21V6, multiclass
     clus
vv    AMP PEAK 21(20Q11.21) MUTATED AMP PEAK 21(20Q11.21) WILD-TYPE
  M0                            106                              17
  M1                             20                               2
  M1A                             2                               0
  MX                             13                               0
D21V7, binary
                                 cls
clus                               0  1
  AMP PEAK 21(20Q11.21) MUTATED   65 78
  AMP PEAK 21(20Q11.21) WILD-TYPE  9 10
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 21(20Q11.21) MUTATED     65   78
  AMP PEAK 21(20Q11.21) WILD-TYPE    9   10
        clus
vv       AMP PEAK 21(20Q11.21) MUTATED AMP PEAK 21(20Q11.21) WILD-TYPE
  FEMALE                            65                               9
  MALE                              78                              10
D21V8, binary
                                 cls
clus                                0   1
  AMP PEAK 21(20Q11.21) MUTATED   132   7
  AMP PEAK 21(20Q11.21) WILD-TYPE  11   6
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 21(20Q11.21) MUTATED    132    7
  AMP PEAK 21(20Q11.21) WILD-TYPE   11    6
                                clus
vv                               AMP PEAK 21(20Q11.21) MUTATED
  RECTAL ADENOCARCINOMA                                    132
  RECTAL MUCINOUS ADENOCARCINOMA                             7
                                clus
vv                               AMP PEAK 21(20Q11.21) WILD-TYPE
  RECTAL ADENOCARCINOMA                                       11
  RECTAL MUCINOUS ADENOCARCINOMA                               6
D21V9, binary
                                 cls
clus                                0   1
  AMP PEAK 21(20Q11.21) MUTATED     5 138
  AMP PEAK 21(20Q11.21) WILD-TYPE   1  18
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 21(20Q11.21) MUTATED      5  138
  AMP PEAK 21(20Q11.21) WILD-TYPE    1   18
     clus
vv    AMP PEAK 21(20Q11.21) MUTATED AMP PEAK 21(20Q11.21) WILD-TYPE
  NO                              5                               1
  YES                           138                              18
                                 vv
clus                               R0  R1  R2  RX
  AMP PEAK 21(20Q11.21) MUTATED   106   2  11   2
  AMP PEAK 21(20Q11.21) WILD-TYPE  15   0   1   1
D21V10, multiclass
    clus
vv   AMP PEAK 21(20Q11.21) MUTATED AMP PEAK 21(20Q11.21) WILD-TYPE
  R0                           106                              15
  R1                             2                               0
  R2                            11                               1
  RX                             2                               1
D21V11, continuous

Clustering(22) Variable = AMP PEAK 22(20Q11.23) MUTATION ANALYSIS
D22V1, survival
                                 sevent
clus2                               0   1
  AMP PEAK 22(20Q11.23) MUTATED   105  13
  AMP PEAK 22(20Q11.23) WILD-TYPE  12   0
  AMP PEAK 22(20Q11.23) MUTATED AMP PEAK 22(20Q11.23) WILD-TYPE 
                            118                              12 
  AMP PEAK 22(20Q11.23) MUTATED AMP PEAK 22(20Q11.23) WILD-TYPE 
                             13                               0 
$`AMP PEAK 22(20Q11.23) MUTATED`
TCGA-AF-2687 TCGA-AF-2689 TCGA-AF-2690 TCGA-AF-2691 TCGA-AF-2693 TCGA-AF-3911 
       24.13        17.95        17.23        10.62        19.10        25.02 
TCGA-AF-3913 TCGA-AF-4110 TCGA-AF-5654 TCGA-AF-6136 TCGA-AF-6655 TCGA-AF-6672 
       10.39        14.50         8.45        15.35        11.67        10.39 
TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3586 TCGA-AG-3587 TCGA-AG-3599 
        1.02         1.02         2.01         1.02         1.02         0.99 
TCGA-AG-3605 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3731 TCGA-AG-3742 TCGA-AG-3878 
        0.99         7.96         0.95         1.02         0.99         0.99 
TCGA-AG-3883 TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3896 TCGA-AG-3999 
        1.02         0.92         0.99         0.99         1.02         1.02 
TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-4022 TCGA-AG-A008 TCGA-AG-A00C 
        1.02         1.02         1.02         0.99        13.91         6.02 
TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 
       25.94        23.01        17.03        15.91        13.02         1.02 
TCGA-AG-A01J TCGA-AG-A01L TCGA-AG-A01N TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 
        1.02        12.00        12.00        70.03        63.98        10.98 
TCGA-AG-A023 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02X TCGA-AG-A032 TCGA-AH-6544 
       51.98         1.94        38.93        40.96        38.01         0.49 
TCGA-AH-6547 TCGA-AH-6643 TCGA-AH-6644 TCGA-AH-6897 TCGA-AH-6903 TCGA-BM-6198 
        1.45         0.69         0.72         4.60         1.81        10.19 
TCGA-CI-6619 TCGA-CI-6620 TCGA-CI-6622 TCGA-CI-6623 TCGA-CI-6624 TCGA-CL-4957 
        6.02         6.02         6.94         9.37         4.70        13.97 
TCGA-CL-5917 TCGA-CL-5918 TCGA-DC-4745 TCGA-DC-4749 TCGA-DC-5337 TCGA-DC-5869 
       60.00         7.99        10.98        11.01        15.02        12.99 
TCGA-DC-6154 TCGA-DC-6155 TCGA-DC-6156 TCGA-DC-6157 TCGA-DC-6158 TCGA-DC-6160 
       12.00        14.01        15.02        36.00         6.97        30.05 
TCGA-DC-6681 TCGA-DC-6682 TCGA-DC-6683 TCGA-DY-A0XA TCGA-DY-A1DC TCGA-DY-A1DD 
       12.95        13.02        10.06       126.41        41.33        57.24 
TCGA-DY-A1DE TCGA-DY-A1DF TCGA-DY-A1DG TCGA-DY-A1H8 TCGA-EF-5830 TCGA-EF-5831 
      129.27        24.13        51.48        32.58         0.49         2.40 
TCGA-EI-6506 TCGA-EI-6508 TCGA-EI-6509 TCGA-EI-6510 TCGA-EI-6511 TCGA-EI-6512 
       20.55        20.91        17.00        18.28        15.85        17.69 
TCGA-EI-6513 TCGA-EI-6514 TCGA-EI-6881 TCGA-EI-6883 TCGA-EI-6884 TCGA-EI-6885 
       16.34        16.31        16.37        11.51        10.78        13.61 
TCGA-EI-7002 TCGA-F5-6465 TCGA-F5-6571 TCGA-F5-6702 TCGA-F5-6810 TCGA-F5-6811 
       11.97         3.39         0.85         2.17         0.39         1.02 
TCGA-F5-6812 TCGA-F5-6813 TCGA-F5-6814 TCGA-F5-6861 TCGA-F5-6863 TCGA-F5-6864 
        0.66         0.69         0.53         1.08         0.76         0.46 
TCGA-G5-6233 TCGA-G5-6235 TCGA-G5-6572 TCGA-G5-6641 
       18.25        55.76        47.08        26.43 

$`AMP PEAK 22(20Q11.23) WILD-TYPE`
TCGA-AF-2692 TCGA-AF-3400 TCGA-AG-3575 TCGA-AG-3892 TCGA-AG-A002 TCGA-AG-A025 
       13.55        12.72        12.00         1.02        20.94        49.94 
TCGA-AG-A02N TCGA-DT-5265 TCGA-EI-6507 TCGA-EI-6882 TCGA-EI-6917 TCGA-EI-7004 
       61.94         5.29        19.96         8.61        17.46         8.45 

  AMP PEAK 22(20Q11.23) MUTATED AMP PEAK 22(20Q11.23) WILD-TYPE 
                           0.39                            1.02 
  AMP PEAK 22(20Q11.23) MUTATED AMP PEAK 22(20Q11.23) WILD-TYPE 
                         129.27                           61.94 
  AMP PEAK 22(20Q11.23) MUTATED AMP PEAK 22(20Q11.23) WILD-TYPE 
                         10.880                          13.135 
[1] "0.4 - 129.3 (10.9)" "1.0 - 61.9 (13.1)" 
                     TCGA-AF-2687                      TCGA-AF-2689 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AF-2690                      TCGA-AF-2691 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AF-2692                      TCGA-AF-2693 
"AMP PEAK 22(20Q11.23) WILD-TYPE"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AF-3400                      TCGA-AF-3911 
"AMP PEAK 22(20Q11.23) WILD-TYPE"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AF-3913                      TCGA-AF-4110 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AF-5654                      TCGA-AF-6136 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AF-6655                      TCGA-AF-6672 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AG-3575                      TCGA-AG-3581 
"AMP PEAK 22(20Q11.23) WILD-TYPE"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AG-3582                      TCGA-AG-3583 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AG-3586                      TCGA-AG-3587 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AG-3599                      TCGA-AG-3605 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AG-3726                      TCGA-AG-3727 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AG-3731                      TCGA-AG-3742 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AG-3878                      TCGA-AG-3883 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AG-3887                      TCGA-AG-3892 
  "AMP PEAK 22(20Q11.23) MUTATED" "AMP PEAK 22(20Q11.23) WILD-TYPE" 
                     TCGA-AG-3893                      TCGA-AG-3894 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AG-3896                      TCGA-AG-3999 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AG-4001                      TCGA-AG-4007 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AG-4008                      TCGA-AG-4022 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AG-A002                      TCGA-AG-A008 
"AMP PEAK 22(20Q11.23) WILD-TYPE"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AG-A00C                      TCGA-AG-A00H 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AG-A00Y                      TCGA-AG-A011 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AG-A014                      TCGA-AG-A015 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AG-A016                      TCGA-AG-A01J 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AG-A01L                      TCGA-AG-A01N 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AG-A01W                      TCGA-AG-A01Y 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AG-A020                      TCGA-AG-A023 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AG-A025                      TCGA-AG-A026 
"AMP PEAK 22(20Q11.23) WILD-TYPE"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AG-A02G                      TCGA-AG-A02N 
  "AMP PEAK 22(20Q11.23) MUTATED" "AMP PEAK 22(20Q11.23) WILD-TYPE" 
                     TCGA-AG-A02X                      TCGA-AG-A032 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AH-6544                      TCGA-AH-6547 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AH-6643                      TCGA-AH-6644 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AH-6897                      TCGA-AH-6903 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-BM-6198                      TCGA-CI-6619 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-CI-6620                      TCGA-CI-6622 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-CI-6623                      TCGA-CI-6624 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-CL-4957                      TCGA-CL-5917 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-CL-5918                      TCGA-DC-4745 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-DC-4749                      TCGA-DC-5337 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-DC-5869                      TCGA-DC-6154 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-DC-6155                      TCGA-DC-6156 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-DC-6157                      TCGA-DC-6158 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-DC-6160                      TCGA-DC-6681 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-DC-6682                      TCGA-DC-6683 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-DT-5265                      TCGA-DY-A0XA 
"AMP PEAK 22(20Q11.23) WILD-TYPE"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-DY-A1DC                      TCGA-DY-A1DD 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-DY-A1DE                      TCGA-DY-A1DF 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-DY-A1DG                      TCGA-DY-A1H8 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-EF-5830                      TCGA-EF-5831 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-EI-6506                      TCGA-EI-6507 
  "AMP PEAK 22(20Q11.23) MUTATED" "AMP PEAK 22(20Q11.23) WILD-TYPE" 
                     TCGA-EI-6508                      TCGA-EI-6509 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-EI-6510                      TCGA-EI-6511 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-EI-6512                      TCGA-EI-6513 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-EI-6514                      TCGA-EI-6881 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-EI-6882                      TCGA-EI-6883 
"AMP PEAK 22(20Q11.23) WILD-TYPE"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-EI-6884                      TCGA-EI-6885 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-EI-6917                      TCGA-EI-7002 
"AMP PEAK 22(20Q11.23) WILD-TYPE"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-EI-7004                      TCGA-F5-6465 
"AMP PEAK 22(20Q11.23) WILD-TYPE"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-F5-6571                      TCGA-F5-6702 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-F5-6810                      TCGA-F5-6811 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-F5-6812                      TCGA-F5-6813 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-F5-6814                      TCGA-F5-6861 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-F5-6863                      TCGA-F5-6864 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-G5-6233                      TCGA-G5-6235 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-G5-6572                      TCGA-G5-6641 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AF-2687                      TCGA-AF-2689 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AF-2690                      TCGA-AF-2691 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AF-2692                      TCGA-AF-2693 
"AMP PEAK 22(20Q11.23) WILD-TYPE"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AF-3400                      TCGA-AF-3911 
"AMP PEAK 22(20Q11.23) WILD-TYPE"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AF-3913                      TCGA-AF-4110 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AF-5654                      TCGA-AF-6136 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AF-6655                      TCGA-AF-6672 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AG-3575                      TCGA-AG-3581 
"AMP PEAK 22(20Q11.23) WILD-TYPE"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AG-3582                      TCGA-AG-3583 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AG-3586                      TCGA-AG-3587 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AG-3599                      TCGA-AG-3605 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AG-3726                      TCGA-AG-3727 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AG-3731                      TCGA-AG-3742 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AG-3878                      TCGA-AG-3883 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AG-3887                      TCGA-AG-3892 
  "AMP PEAK 22(20Q11.23) MUTATED" "AMP PEAK 22(20Q11.23) WILD-TYPE" 
                     TCGA-AG-3893                      TCGA-AG-3894 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AG-3896                      TCGA-AG-3999 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AG-4001                      TCGA-AG-4007 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AG-4008                      TCGA-AG-4022 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AG-A002                      TCGA-AG-A008 
"AMP PEAK 22(20Q11.23) WILD-TYPE"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AG-A00C                      TCGA-AG-A00H 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AG-A00Y                      TCGA-AG-A011 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AG-A014                      TCGA-AG-A015 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AG-A016                      TCGA-AG-A01J 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AG-A01L                      TCGA-AG-A01N 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AG-A01W                      TCGA-AG-A01Y 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AG-A020                      TCGA-AG-A023 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AG-A025                      TCGA-AG-A026 
"AMP PEAK 22(20Q11.23) WILD-TYPE"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AG-A02G                      TCGA-AG-A02N 
  "AMP PEAK 22(20Q11.23) MUTATED" "AMP PEAK 22(20Q11.23) WILD-TYPE" 
                     TCGA-AG-A02X                      TCGA-AG-A032 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AH-6544                      TCGA-AH-6547 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AH-6643                      TCGA-AH-6644 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AH-6897                      TCGA-AH-6903 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-BM-6198                      TCGA-CI-6619 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-CI-6620                      TCGA-CI-6622 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-CI-6623                      TCGA-CI-6624 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-CL-4957                      TCGA-CL-5917 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-CL-5918                      TCGA-DC-4745 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-DC-4749                      TCGA-DC-5337 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-DC-5869                      TCGA-DC-6154 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-DC-6155                      TCGA-DC-6156 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-DC-6157                      TCGA-DC-6158 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-DC-6160                      TCGA-DC-6681 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-DC-6682                      TCGA-DC-6683 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-DT-5265                      TCGA-DY-A0XA 
"AMP PEAK 22(20Q11.23) WILD-TYPE"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-DY-A1DC                      TCGA-DY-A1DD 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-DY-A1DE                      TCGA-DY-A1DF 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-DY-A1DG                      TCGA-DY-A1H8 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-EF-5830                      TCGA-EF-5831 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-EI-6506                      TCGA-EI-6507 
  "AMP PEAK 22(20Q11.23) MUTATED" "AMP PEAK 22(20Q11.23) WILD-TYPE" 
                     TCGA-EI-6508                      TCGA-EI-6509 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-EI-6510                      TCGA-EI-6511 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-EI-6512                      TCGA-EI-6513 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-EI-6514                      TCGA-EI-6881 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-EI-6882                      TCGA-EI-6883 
"AMP PEAK 22(20Q11.23) WILD-TYPE"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-EI-6884                      TCGA-EI-6885 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-EI-6917                      TCGA-EI-7002 
"AMP PEAK 22(20Q11.23) WILD-TYPE"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-EI-7004                      TCGA-F5-6465 
"AMP PEAK 22(20Q11.23) WILD-TYPE"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-F5-6571                      TCGA-F5-6702 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-F5-6810                      TCGA-F5-6811 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-F5-6812                      TCGA-F5-6813 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-F5-6814                      TCGA-F5-6861 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-F5-6863                      TCGA-F5-6864 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-G5-6233                      TCGA-G5-6235 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-G5-6572                      TCGA-G5-6641 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AF-2687                      TCGA-AF-2689 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AF-2690                      TCGA-AF-2691 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AF-2692                      TCGA-AF-2693 
"AMP PEAK 22(20Q11.23) WILD-TYPE"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AF-3400                      TCGA-AF-3911 
"AMP PEAK 22(20Q11.23) WILD-TYPE"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AF-3913                      TCGA-AF-4110 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AF-5654                      TCGA-AF-6136 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AF-6655                      TCGA-AF-6672 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AG-3575                      TCGA-AG-3581 
"AMP PEAK 22(20Q11.23) WILD-TYPE"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AG-3582                      TCGA-AG-3583 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AG-3586                      TCGA-AG-3587 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AG-3599                      TCGA-AG-3605 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AG-3726                      TCGA-AG-3727 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AG-3731                      TCGA-AG-3742 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AG-3878                      TCGA-AG-3883 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AG-3887                      TCGA-AG-3892 
  "AMP PEAK 22(20Q11.23) MUTATED" "AMP PEAK 22(20Q11.23) WILD-TYPE" 
                     TCGA-AG-3893                      TCGA-AG-3894 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AG-3896                      TCGA-AG-3999 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AG-4001                      TCGA-AG-4007 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AG-4008                      TCGA-AG-4022 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AG-A002                      TCGA-AG-A008 
"AMP PEAK 22(20Q11.23) WILD-TYPE"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AG-A00C                      TCGA-AG-A00H 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AG-A00Y                      TCGA-AG-A011 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AG-A014                      TCGA-AG-A015 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AG-A016                      TCGA-AG-A01J 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AG-A01L                      TCGA-AG-A01N 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AG-A01W                      TCGA-AG-A01Y 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AG-A020                      TCGA-AG-A023 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AG-A025                      TCGA-AG-A026 
"AMP PEAK 22(20Q11.23) WILD-TYPE"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AG-A02G                      TCGA-AG-A02N 
  "AMP PEAK 22(20Q11.23) MUTATED" "AMP PEAK 22(20Q11.23) WILD-TYPE" 
                     TCGA-AG-A02X                      TCGA-AG-A032 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AH-6544                      TCGA-AH-6547 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AH-6643                      TCGA-AH-6644 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-AH-6897                      TCGA-AH-6903 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-BM-6198                      TCGA-CI-6619 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-CI-6620                      TCGA-CI-6622 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-CI-6623                      TCGA-CI-6624 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-CL-4957                      TCGA-CL-5917 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-CL-5918                      TCGA-DC-4745 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-DC-4749                      TCGA-DC-5337 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-DC-5869                      TCGA-DC-6154 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-DC-6155                      TCGA-DC-6156 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-DC-6157                      TCGA-DC-6158 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-DC-6160                      TCGA-DC-6681 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-DC-6682                      TCGA-DC-6683 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-DT-5265                      TCGA-DY-A0XA 
"AMP PEAK 22(20Q11.23) WILD-TYPE"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-DY-A1DC                      TCGA-DY-A1DD 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-DY-A1DE                      TCGA-DY-A1DF 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-DY-A1DG                      TCGA-DY-A1H8 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-EF-5830                      TCGA-EF-5831 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-EI-6506                      TCGA-EI-6507 
  "AMP PEAK 22(20Q11.23) MUTATED" "AMP PEAK 22(20Q11.23) WILD-TYPE" 
                     TCGA-EI-6508                      TCGA-EI-6509 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-EI-6510                      TCGA-EI-6511 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-EI-6512                      TCGA-EI-6513 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-EI-6514                      TCGA-EI-6881 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-EI-6882                      TCGA-EI-6883 
"AMP PEAK 22(20Q11.23) WILD-TYPE"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-EI-6884                      TCGA-EI-6885 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-EI-6917                      TCGA-EI-7002 
"AMP PEAK 22(20Q11.23) WILD-TYPE"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-EI-7004                      TCGA-F5-6465 
"AMP PEAK 22(20Q11.23) WILD-TYPE"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-F5-6571                      TCGA-F5-6702 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-F5-6810                      TCGA-F5-6811 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-F5-6812                      TCGA-F5-6813 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-F5-6814                      TCGA-F5-6861 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-F5-6863                      TCGA-F5-6864 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-G5-6233                      TCGA-G5-6235 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
                     TCGA-G5-6572                      TCGA-G5-6641 
  "AMP PEAK 22(20Q11.23) MUTATED"   "AMP PEAK 22(20Q11.23) MUTATED" 
[1] "hr="     "2.2e+08"
D22V2, continuous
                                 vv
clus                              STAGE I STAGE II STAGE IIA STAGE IIB
  AMP PEAK 22(20Q11.23) MUTATED        26        5        31         2
  AMP PEAK 22(20Q11.23) WILD-TYPE       4        3         7         0
                                 vv
clus                              STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  AMP PEAK 22(20Q11.23) MUTATED           2         5          8         23
  AMP PEAK 22(20Q11.23) WILD-TYPE         0         0          1          0
                                 vv
clus                              STAGE IIIC STAGE IV STAGE IVA
  AMP PEAK 22(20Q11.23) MUTATED           13       16         8
  AMP PEAK 22(20Q11.23) WILD-TYPE          1        1         1
D22V3, multiclass
                                 vv
clus                              T1 T2 T3 T4
  AMP PEAK 22(20Q11.23) MUTATED    7 27 96 13
  AMP PEAK 22(20Q11.23) WILD-TYPE  2  2 13  1
D22V4, multiclass
    clus
vv   AMP PEAK 22(20Q11.23) MUTATED AMP PEAK 22(20Q11.23) WILD-TYPE
  T1                             7                               2
  T2                            27                               2
  T3                            96                              13
  T4                            13                               1
                                 vv
clus                              N0 N1 N2
  AMP PEAK 22(20Q11.23) MUTATED   69 44 29
  AMP PEAK 22(20Q11.23) WILD-TYPE 14  1  3
D22V5, multiclass
    clus
vv   AMP PEAK 22(20Q11.23) MUTATED AMP PEAK 22(20Q11.23) WILD-TYPE
  N0                            69                              14
  N1                            44                               1
  N2                            29                               3
                                 vv
clus                               M0  M1 M1A  MX
  AMP PEAK 22(20Q11.23) MUTATED   106  21   2  13
  AMP PEAK 22(20Q11.23) WILD-TYPE  17   1   0   0
D22V6, multiclass
     clus
vv    AMP PEAK 22(20Q11.23) MUTATED AMP PEAK 22(20Q11.23) WILD-TYPE
  M0                            106                              17
  M1                             21                               1
  M1A                             2                               0
  MX                             13                               0
D22V7, binary
                                 cls
clus                               0  1
  AMP PEAK 22(20Q11.23) MUTATED   66 78
  AMP PEAK 22(20Q11.23) WILD-TYPE  8 10
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 22(20Q11.23) MUTATED     66   78
  AMP PEAK 22(20Q11.23) WILD-TYPE    8   10
        clus
vv       AMP PEAK 22(20Q11.23) MUTATED AMP PEAK 22(20Q11.23) WILD-TYPE
  FEMALE                            66                               8
  MALE                              78                              10
D22V8, binary
                                 cls
clus                                0   1
  AMP PEAK 22(20Q11.23) MUTATED   133   7
  AMP PEAK 22(20Q11.23) WILD-TYPE  10   6
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 22(20Q11.23) MUTATED    133    7
  AMP PEAK 22(20Q11.23) WILD-TYPE   10    6
                                clus
vv                               AMP PEAK 22(20Q11.23) MUTATED
  RECTAL ADENOCARCINOMA                                    133
  RECTAL MUCINOUS ADENOCARCINOMA                             7
                                clus
vv                               AMP PEAK 22(20Q11.23) WILD-TYPE
  RECTAL ADENOCARCINOMA                                       10
  RECTAL MUCINOUS ADENOCARCINOMA                               6
D22V9, binary
                                 cls
clus                                0   1
  AMP PEAK 22(20Q11.23) MUTATED     5 139
  AMP PEAK 22(20Q11.23) WILD-TYPE   1  17
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 22(20Q11.23) MUTATED      5  139
  AMP PEAK 22(20Q11.23) WILD-TYPE    1   17
     clus
vv    AMP PEAK 22(20Q11.23) MUTATED AMP PEAK 22(20Q11.23) WILD-TYPE
  NO                              5                               1
  YES                           139                              17
                                 vv
clus                               R0  R1  R2  RX
  AMP PEAK 22(20Q11.23) MUTATED   106   2  11   2
  AMP PEAK 22(20Q11.23) WILD-TYPE  15   0   1   1
D22V10, multiclass
    clus
vv   AMP PEAK 22(20Q11.23) MUTATED AMP PEAK 22(20Q11.23) WILD-TYPE
  R0                           106                              15
  R1                             2                               0
  R2                            11                               1
  RX                             2                               1
D22V11, continuous

Clustering(23) Variable = AMP PEAK 23(20Q13.33) MUTATION ANALYSIS
D23V1, survival
                                 sevent
clus2                               0   1
  AMP PEAK 23(20Q13.33) MUTATED   105  12
  AMP PEAK 23(20Q13.33) WILD-TYPE  12   1
  AMP PEAK 23(20Q13.33) MUTATED AMP PEAK 23(20Q13.33) WILD-TYPE 
                            117                              13 
  AMP PEAK 23(20Q13.33) MUTATED AMP PEAK 23(20Q13.33) WILD-TYPE 
                             12                               1 
$`AMP PEAK 23(20Q13.33) MUTATED`
TCGA-AF-2687 TCGA-AF-2689 TCGA-AF-2690 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-2693 
       24.13        17.95        17.23        10.62        13.55        19.10 
TCGA-AF-3911 TCGA-AF-3913 TCGA-AF-4110 TCGA-AF-5654 TCGA-AF-6136 TCGA-AF-6655 
       25.02        10.39        14.50         8.45        15.35        11.67 
TCGA-AF-6672 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3586 TCGA-AG-3587 
       10.39         1.02         1.02         2.01         1.02         1.02 
TCGA-AG-3599 TCGA-AG-3605 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3731 TCGA-AG-3742 
        0.99         0.99         7.96         0.95         1.02         0.99 
TCGA-AG-3878 TCGA-AG-3883 TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3896 
        0.99         1.02         0.92         0.99         0.99         1.02 
TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-4022 TCGA-AG-A008 TCGA-AG-A00C 
        1.02         1.02         1.02         0.99        13.91         6.02 
TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 
       25.94        23.01        17.03        15.91        13.02         1.02 
TCGA-AG-A01J TCGA-AG-A01L TCGA-AG-A01N TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 
        1.02        12.00        12.00        70.03        63.98        10.98 
TCGA-AG-A023 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02X TCGA-AG-A032 TCGA-AH-6544 
       51.98         1.94        38.93        40.96        38.01         0.49 
TCGA-AH-6547 TCGA-AH-6643 TCGA-AH-6644 TCGA-AH-6897 TCGA-AH-6903 TCGA-BM-6198 
        1.45         0.69         0.72         4.60         1.81        10.19 
TCGA-CI-6619 TCGA-CI-6620 TCGA-CI-6622 TCGA-CI-6623 TCGA-CI-6624 TCGA-CL-4957 
        6.02         6.02         6.94         9.37         4.70        13.97 
TCGA-CL-5917 TCGA-CL-5918 TCGA-DC-4745 TCGA-DC-4749 TCGA-DC-5337 TCGA-DC-5869 
       60.00         7.99        10.98        11.01        15.02        12.99 
TCGA-DC-6154 TCGA-DC-6155 TCGA-DC-6156 TCGA-DC-6157 TCGA-DC-6158 TCGA-DC-6160 
       12.00        14.01        15.02        36.00         6.97        30.05 
TCGA-DC-6681 TCGA-DC-6682 TCGA-DC-6683 TCGA-DY-A0XA TCGA-DY-A1DC TCGA-DY-A1DD 
       12.95        13.02        10.06       126.41        41.33        57.24 
TCGA-DY-A1DE TCGA-DY-A1DF TCGA-DY-A1H8 TCGA-EF-5830 TCGA-EF-5831 TCGA-EI-6506 
      129.27        24.13        32.58         0.49         2.40        20.55 
TCGA-EI-6508 TCGA-EI-6509 TCGA-EI-6510 TCGA-EI-6511 TCGA-EI-6512 TCGA-EI-6513 
       20.91        17.00        18.28        15.85        17.69        16.34 
TCGA-EI-6514 TCGA-EI-6881 TCGA-EI-6883 TCGA-EI-6884 TCGA-EI-6885 TCGA-EI-7002 
       16.31        16.37        11.51        10.78        13.61        11.97 
TCGA-F5-6465 TCGA-F5-6571 TCGA-F5-6702 TCGA-F5-6810 TCGA-F5-6811 TCGA-F5-6812 
        3.39         0.85         2.17         0.39         1.02         0.66 
TCGA-F5-6813 TCGA-F5-6814 TCGA-F5-6861 TCGA-F5-6863 TCGA-F5-6864 TCGA-G5-6233 
        0.69         0.53         1.08         0.76         0.46        18.25 
TCGA-G5-6235 TCGA-G5-6572 TCGA-G5-6641 
       55.76        47.08        26.43 

$`AMP PEAK 23(20Q13.33) WILD-TYPE`
TCGA-AF-3400 TCGA-AG-3575 TCGA-AG-3892 TCGA-AG-3999 TCGA-AG-A002 TCGA-AG-A025 
       12.72        12.00         1.02         1.02        20.94        49.94 
TCGA-AG-A02N TCGA-DT-5265 TCGA-DY-A1DG TCGA-EI-6507 TCGA-EI-6882 TCGA-EI-6917 
       61.94         5.29        51.48        19.96         8.61        17.46 
TCGA-EI-7004 
        8.45 

  AMP PEAK 23(20Q13.33) MUTATED AMP PEAK 23(20Q13.33) WILD-TYPE 
                           0.39                            1.02 
  AMP PEAK 23(20Q13.33) MUTATED AMP PEAK 23(20Q13.33) WILD-TYPE 
                         129.27                           61.94 
  AMP PEAK 23(20Q13.33) MUTATED AMP PEAK 23(20Q13.33) WILD-TYPE 
                          10.98                           12.72 
[1] "0.4 - 129.3 (11.0)" "1.0 - 61.9 (12.7)" 
                     TCGA-AF-2687                      TCGA-AF-2689 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-AF-2690                      TCGA-AF-2691 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-AF-2692                      TCGA-AF-2693 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-AF-3400                      TCGA-AF-3911 
"AMP PEAK 23(20Q13.33) WILD-TYPE"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-AF-3913                      TCGA-AF-4110 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-AF-5654                      TCGA-AF-6136 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-AF-6655                      TCGA-AF-6672 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-AG-3575                      TCGA-AG-3581 
"AMP PEAK 23(20Q13.33) WILD-TYPE"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-AG-3582                      TCGA-AG-3583 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-AG-3586                      TCGA-AG-3587 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-AG-3599                      TCGA-AG-3605 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-AG-3726                      TCGA-AG-3727 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-AG-3731                      TCGA-AG-3742 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-AG-3878                      TCGA-AG-3883 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-AG-3887                      TCGA-AG-3892 
  "AMP PEAK 23(20Q13.33) MUTATED" "AMP PEAK 23(20Q13.33) WILD-TYPE" 
                     TCGA-AG-3893                      TCGA-AG-3894 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-AG-3896                      TCGA-AG-3999 
  "AMP PEAK 23(20Q13.33) MUTATED" "AMP PEAK 23(20Q13.33) WILD-TYPE" 
                     TCGA-AG-4001                      TCGA-AG-4007 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-AG-4008                      TCGA-AG-4022 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-AG-A002                      TCGA-AG-A008 
"AMP PEAK 23(20Q13.33) WILD-TYPE"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-AG-A00C                      TCGA-AG-A00H 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-AG-A00Y                      TCGA-AG-A011 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-AG-A014                      TCGA-AG-A015 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-AG-A016                      TCGA-AG-A01J 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-AG-A01L                      TCGA-AG-A01N 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-AG-A01W                      TCGA-AG-A01Y 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-AG-A020                      TCGA-AG-A023 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-AG-A025                      TCGA-AG-A026 
"AMP PEAK 23(20Q13.33) WILD-TYPE"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-AG-A02G                      TCGA-AG-A02N 
  "AMP PEAK 23(20Q13.33) MUTATED" "AMP PEAK 23(20Q13.33) WILD-TYPE" 
                     TCGA-AG-A02X                      TCGA-AG-A032 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-AH-6544                      TCGA-AH-6547 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-AH-6643                      TCGA-AH-6644 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-AH-6897                      TCGA-AH-6903 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-BM-6198                      TCGA-CI-6619 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-CI-6620                      TCGA-CI-6622 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-CI-6623                      TCGA-CI-6624 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-CL-4957                      TCGA-CL-5917 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-CL-5918                      TCGA-DC-4745 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-DC-4749                      TCGA-DC-5337 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-DC-5869                      TCGA-DC-6154 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-DC-6155                      TCGA-DC-6156 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-DC-6157                      TCGA-DC-6158 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-DC-6160                      TCGA-DC-6681 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-DC-6682                      TCGA-DC-6683 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-DT-5265                      TCGA-DY-A0XA 
"AMP PEAK 23(20Q13.33) WILD-TYPE"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-DY-A1DC                      TCGA-DY-A1DD 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-DY-A1DE                      TCGA-DY-A1DF 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-DY-A1DG                      TCGA-DY-A1H8 
"AMP PEAK 23(20Q13.33) WILD-TYPE"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-EF-5830                      TCGA-EF-5831 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-EI-6506                      TCGA-EI-6507 
  "AMP PEAK 23(20Q13.33) MUTATED" "AMP PEAK 23(20Q13.33) WILD-TYPE" 
                     TCGA-EI-6508                      TCGA-EI-6509 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-EI-6510                      TCGA-EI-6511 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-EI-6512                      TCGA-EI-6513 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-EI-6514                      TCGA-EI-6881 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-EI-6882                      TCGA-EI-6883 
"AMP PEAK 23(20Q13.33) WILD-TYPE"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-EI-6884                      TCGA-EI-6885 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-EI-6917                      TCGA-EI-7002 
"AMP PEAK 23(20Q13.33) WILD-TYPE"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-EI-7004                      TCGA-F5-6465 
"AMP PEAK 23(20Q13.33) WILD-TYPE"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-F5-6571                      TCGA-F5-6702 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-F5-6810                      TCGA-F5-6811 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-F5-6812                      TCGA-F5-6813 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-F5-6814                      TCGA-F5-6861 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-F5-6863                      TCGA-F5-6864 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-G5-6233                      TCGA-G5-6235 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-G5-6572                      TCGA-G5-6641 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-AF-2687                      TCGA-AF-2689 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-AF-2690                      TCGA-AF-2691 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-AF-2692                      TCGA-AF-2693 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-AF-3400                      TCGA-AF-3911 
"AMP PEAK 23(20Q13.33) WILD-TYPE"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-AF-3913                      TCGA-AF-4110 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-AF-5654                      TCGA-AF-6136 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-AF-6655                      TCGA-AF-6672 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-AG-3575                      TCGA-AG-3581 
"AMP PEAK 23(20Q13.33) WILD-TYPE"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-AG-3582                      TCGA-AG-3583 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-AG-3586                      TCGA-AG-3587 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-AG-3599                      TCGA-AG-3605 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-AG-3726                      TCGA-AG-3727 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-AG-3731                      TCGA-AG-3742 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-AG-3878                      TCGA-AG-3883 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-AG-3887                      TCGA-AG-3892 
  "AMP PEAK 23(20Q13.33) MUTATED" "AMP PEAK 23(20Q13.33) WILD-TYPE" 
                     TCGA-AG-3893                      TCGA-AG-3894 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-AG-3896                      TCGA-AG-3999 
  "AMP PEAK 23(20Q13.33) MUTATED" "AMP PEAK 23(20Q13.33) WILD-TYPE" 
                     TCGA-AG-4001                      TCGA-AG-4007 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-AG-4008                      TCGA-AG-4022 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-AG-A002                      TCGA-AG-A008 
"AMP PEAK 23(20Q13.33) WILD-TYPE"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-AG-A00C                      TCGA-AG-A00H 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-AG-A00Y                      TCGA-AG-A011 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-AG-A014                      TCGA-AG-A015 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-AG-A016                      TCGA-AG-A01J 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-AG-A01L                      TCGA-AG-A01N 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-AG-A01W                      TCGA-AG-A01Y 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-AG-A020                      TCGA-AG-A023 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-AG-A025                      TCGA-AG-A026 
"AMP PEAK 23(20Q13.33) WILD-TYPE"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-AG-A02G                      TCGA-AG-A02N 
  "AMP PEAK 23(20Q13.33) MUTATED" "AMP PEAK 23(20Q13.33) WILD-TYPE" 
                     TCGA-AG-A02X                      TCGA-AG-A032 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-AH-6544                      TCGA-AH-6547 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-AH-6643                      TCGA-AH-6644 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-AH-6897                      TCGA-AH-6903 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-BM-6198                      TCGA-CI-6619 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-CI-6620                      TCGA-CI-6622 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-CI-6623                      TCGA-CI-6624 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-CL-4957                      TCGA-CL-5917 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-CL-5918                      TCGA-DC-4745 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-DC-4749                      TCGA-DC-5337 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-DC-5869                      TCGA-DC-6154 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-DC-6155                      TCGA-DC-6156 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-DC-6157                      TCGA-DC-6158 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-DC-6160                      TCGA-DC-6681 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-DC-6682                      TCGA-DC-6683 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-DT-5265                      TCGA-DY-A0XA 
"AMP PEAK 23(20Q13.33) WILD-TYPE"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-DY-A1DC                      TCGA-DY-A1DD 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-DY-A1DE                      TCGA-DY-A1DF 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-DY-A1DG                      TCGA-DY-A1H8 
"AMP PEAK 23(20Q13.33) WILD-TYPE"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-EF-5830                      TCGA-EF-5831 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-EI-6506                      TCGA-EI-6507 
  "AMP PEAK 23(20Q13.33) MUTATED" "AMP PEAK 23(20Q13.33) WILD-TYPE" 
                     TCGA-EI-6508                      TCGA-EI-6509 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-EI-6510                      TCGA-EI-6511 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-EI-6512                      TCGA-EI-6513 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-EI-6514                      TCGA-EI-6881 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-EI-6882                      TCGA-EI-6883 
"AMP PEAK 23(20Q13.33) WILD-TYPE"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-EI-6884                      TCGA-EI-6885 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-EI-6917                      TCGA-EI-7002 
"AMP PEAK 23(20Q13.33) WILD-TYPE"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-EI-7004                      TCGA-F5-6465 
"AMP PEAK 23(20Q13.33) WILD-TYPE"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-F5-6571                      TCGA-F5-6702 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-F5-6810                      TCGA-F5-6811 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-F5-6812                      TCGA-F5-6813 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-F5-6814                      TCGA-F5-6861 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-F5-6863                      TCGA-F5-6864 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-G5-6233                      TCGA-G5-6235 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-G5-6572                      TCGA-G5-6641 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-AF-2687                      TCGA-AF-2689 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-AF-2690                      TCGA-AF-2691 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-AF-2692                      TCGA-AF-2693 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-AF-3400                      TCGA-AF-3911 
"AMP PEAK 23(20Q13.33) WILD-TYPE"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-AF-3913                      TCGA-AF-4110 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-AF-5654                      TCGA-AF-6136 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-AF-6655                      TCGA-AF-6672 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-AG-3575                      TCGA-AG-3581 
"AMP PEAK 23(20Q13.33) WILD-TYPE"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-AG-3582                      TCGA-AG-3583 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-AG-3586                      TCGA-AG-3587 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-AG-3599                      TCGA-AG-3605 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-AG-3726                      TCGA-AG-3727 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-AG-3731                      TCGA-AG-3742 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-AG-3878                      TCGA-AG-3883 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-AG-3887                      TCGA-AG-3892 
  "AMP PEAK 23(20Q13.33) MUTATED" "AMP PEAK 23(20Q13.33) WILD-TYPE" 
                     TCGA-AG-3893                      TCGA-AG-3894 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-AG-3896                      TCGA-AG-3999 
  "AMP PEAK 23(20Q13.33) MUTATED" "AMP PEAK 23(20Q13.33) WILD-TYPE" 
                     TCGA-AG-4001                      TCGA-AG-4007 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-AG-4008                      TCGA-AG-4022 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-AG-A002                      TCGA-AG-A008 
"AMP PEAK 23(20Q13.33) WILD-TYPE"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-AG-A00C                      TCGA-AG-A00H 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-AG-A00Y                      TCGA-AG-A011 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-AG-A014                      TCGA-AG-A015 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-AG-A016                      TCGA-AG-A01J 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-AG-A01L                      TCGA-AG-A01N 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-AG-A01W                      TCGA-AG-A01Y 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-AG-A020                      TCGA-AG-A023 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-AG-A025                      TCGA-AG-A026 
"AMP PEAK 23(20Q13.33) WILD-TYPE"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-AG-A02G                      TCGA-AG-A02N 
  "AMP PEAK 23(20Q13.33) MUTATED" "AMP PEAK 23(20Q13.33) WILD-TYPE" 
                     TCGA-AG-A02X                      TCGA-AG-A032 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-AH-6544                      TCGA-AH-6547 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-AH-6643                      TCGA-AH-6644 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-AH-6897                      TCGA-AH-6903 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-BM-6198                      TCGA-CI-6619 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-CI-6620                      TCGA-CI-6622 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-CI-6623                      TCGA-CI-6624 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-CL-4957                      TCGA-CL-5917 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-CL-5918                      TCGA-DC-4745 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-DC-4749                      TCGA-DC-5337 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-DC-5869                      TCGA-DC-6154 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-DC-6155                      TCGA-DC-6156 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-DC-6157                      TCGA-DC-6158 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-DC-6160                      TCGA-DC-6681 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-DC-6682                      TCGA-DC-6683 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-DT-5265                      TCGA-DY-A0XA 
"AMP PEAK 23(20Q13.33) WILD-TYPE"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-DY-A1DC                      TCGA-DY-A1DD 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-DY-A1DE                      TCGA-DY-A1DF 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-DY-A1DG                      TCGA-DY-A1H8 
"AMP PEAK 23(20Q13.33) WILD-TYPE"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-EF-5830                      TCGA-EF-5831 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-EI-6506                      TCGA-EI-6507 
  "AMP PEAK 23(20Q13.33) MUTATED" "AMP PEAK 23(20Q13.33) WILD-TYPE" 
                     TCGA-EI-6508                      TCGA-EI-6509 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-EI-6510                      TCGA-EI-6511 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-EI-6512                      TCGA-EI-6513 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-EI-6514                      TCGA-EI-6881 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-EI-6882                      TCGA-EI-6883 
"AMP PEAK 23(20Q13.33) WILD-TYPE"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-EI-6884                      TCGA-EI-6885 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-EI-6917                      TCGA-EI-7002 
"AMP PEAK 23(20Q13.33) WILD-TYPE"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-EI-7004                      TCGA-F5-6465 
"AMP PEAK 23(20Q13.33) WILD-TYPE"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-F5-6571                      TCGA-F5-6702 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-F5-6810                      TCGA-F5-6811 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-F5-6812                      TCGA-F5-6813 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-F5-6814                      TCGA-F5-6861 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-F5-6863                      TCGA-F5-6864 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-G5-6233                      TCGA-G5-6235 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
                     TCGA-G5-6572                      TCGA-G5-6641 
  "AMP PEAK 23(20Q13.33) MUTATED"   "AMP PEAK 23(20Q13.33) MUTATED" 
[1] "hr=" "2.3"
D23V2, continuous
                                 vv
clus                              STAGE I STAGE II STAGE IIA STAGE IIB
  AMP PEAK 23(20Q13.33) MUTATED        26        5        32         2
  AMP PEAK 23(20Q13.33) WILD-TYPE       4        3         6         0
                                 vv
clus                              STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  AMP PEAK 23(20Q13.33) MUTATED           2         5          8         23
  AMP PEAK 23(20Q13.33) WILD-TYPE         0         0          1          0
                                 vv
clus                              STAGE IIIC STAGE IV STAGE IVA
  AMP PEAK 23(20Q13.33) MUTATED           12       16         7
  AMP PEAK 23(20Q13.33) WILD-TYPE          2        1         2
D23V3, multiclass
                                 vv
clus                              T1 T2 T3 T4
  AMP PEAK 23(20Q13.33) MUTATED    7 27 95 13
  AMP PEAK 23(20Q13.33) WILD-TYPE  2  2 14  1
D23V4, multiclass
    clus
vv   AMP PEAK 23(20Q13.33) MUTATED AMP PEAK 23(20Q13.33) WILD-TYPE
  T1                             7                               2
  T2                            27                               2
  T3                            95                              14
  T4                            13                               1
                                 vv
clus                              N0 N1 N2
  AMP PEAK 23(20Q13.33) MUTATED   70 43 28
  AMP PEAK 23(20Q13.33) WILD-TYPE 13  2  4
D23V5, multiclass
    clus
vv   AMP PEAK 23(20Q13.33) MUTATED AMP PEAK 23(20Q13.33) WILD-TYPE
  N0                            70                              13
  N1                            43                               2
  N2                            28                               4
                                 vv
clus                               M0  M1 M1A  MX
  AMP PEAK 23(20Q13.33) MUTATED   106  20   2  13
  AMP PEAK 23(20Q13.33) WILD-TYPE  17   2   0   0
D23V6, multiclass
     clus
vv    AMP PEAK 23(20Q13.33) MUTATED AMP PEAK 23(20Q13.33) WILD-TYPE
  M0                            106                              17
  M1                             20                               2
  M1A                             2                               0
  MX                             13                               0
D23V7, binary
                                 cls
clus                               0  1
  AMP PEAK 23(20Q13.33) MUTATED   66 77
  AMP PEAK 23(20Q13.33) WILD-TYPE  8 11
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 23(20Q13.33) MUTATED     66   77
  AMP PEAK 23(20Q13.33) WILD-TYPE    8   11
        clus
vv       AMP PEAK 23(20Q13.33) MUTATED AMP PEAK 23(20Q13.33) WILD-TYPE
  FEMALE                            66                               8
  MALE                              77                              11
D23V8, binary
                                 cls
clus                                0   1
  AMP PEAK 23(20Q13.33) MUTATED   131   7
  AMP PEAK 23(20Q13.33) WILD-TYPE  12   6
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 23(20Q13.33) MUTATED    131    7
  AMP PEAK 23(20Q13.33) WILD-TYPE   12    6
                                clus
vv                               AMP PEAK 23(20Q13.33) MUTATED
  RECTAL ADENOCARCINOMA                                    131
  RECTAL MUCINOUS ADENOCARCINOMA                             7
                                clus
vv                               AMP PEAK 23(20Q13.33) WILD-TYPE
  RECTAL ADENOCARCINOMA                                       12
  RECTAL MUCINOUS ADENOCARCINOMA                               6
D23V9, binary
                                 cls
clus                                0   1
  AMP PEAK 23(20Q13.33) MUTATED     5 138
  AMP PEAK 23(20Q13.33) WILD-TYPE   1  18
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 23(20Q13.33) MUTATED      5  138
  AMP PEAK 23(20Q13.33) WILD-TYPE    1   18
     clus
vv    AMP PEAK 23(20Q13.33) MUTATED AMP PEAK 23(20Q13.33) WILD-TYPE
  NO                              5                               1
  YES                           138                              18
                                 vv
clus                               R0  R1  R2  RX
  AMP PEAK 23(20Q13.33) MUTATED   106   2  11   2
  AMP PEAK 23(20Q13.33) WILD-TYPE  15   0   1   1
D23V10, multiclass
    clus
vv   AMP PEAK 23(20Q13.33) MUTATED AMP PEAK 23(20Q13.33) WILD-TYPE
  R0                           106                              15
  R1                             2                               0
  R2                            11                               1
  RX                             2                               1
D23V11, continuous

Clustering(24) Variable = AMP PEAK 24(XP22.2) MUTATION ANALYSIS
D24V1, survival
                               sevent
clus2                            0  1
  AMP PEAK 24(XP22.2) MUTATED   22  2
  AMP PEAK 24(XP22.2) WILD-TYPE 95 11
  AMP PEAK 24(XP22.2) MUTATED AMP PEAK 24(XP22.2) WILD-TYPE 
                           24                           106 
  AMP PEAK 24(XP22.2) MUTATED AMP PEAK 24(XP22.2) WILD-TYPE 
                            2                            11 
$`AMP PEAK 24(XP22.2) MUTATED`
TCGA-AF-3913 TCGA-AF-5654 TCGA-AF-6655 TCGA-AG-3999 TCGA-AG-4022 TCGA-AG-A014 
       10.39         8.45        11.67         1.02         0.99        15.91 
TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01N TCGA-AG-A01Y TCGA-AG-A02N TCGA-AG-A032 
       13.02         1.02        12.00        63.98        61.94        38.01 
TCGA-AH-6644 TCGA-AH-6897 TCGA-DC-4745 TCGA-DC-6154 TCGA-DT-5265 TCGA-DY-A1H8 
        0.72         4.60        10.98        12.00         5.29        32.58 
TCGA-EI-6510 TCGA-EI-6512 TCGA-EI-6885 TCGA-EI-7002 TCGA-F5-6863 TCGA-G5-6235 
       18.28        17.69        13.61        11.97         0.76        55.76 

$`AMP PEAK 24(XP22.2) WILD-TYPE`
TCGA-AF-2687 TCGA-AF-2689 TCGA-AF-2690 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-2693 
       24.13        17.95        17.23        10.62        13.55        19.10 
TCGA-AF-3400 TCGA-AF-3911 TCGA-AF-4110 TCGA-AF-6136 TCGA-AF-6672 TCGA-AG-3575 
       12.72        25.02        14.50        15.35        10.39        12.00 
TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3586 TCGA-AG-3587 TCGA-AG-3599 
        1.02         1.02         2.01         1.02         1.02         0.99 
TCGA-AG-3605 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3731 TCGA-AG-3742 TCGA-AG-3878 
        0.99         7.96         0.95         1.02         0.99         0.99 
TCGA-AG-3883 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3896 
        1.02         0.92         1.02         0.99         0.99         1.02 
TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C 
        1.02         1.02         1.02        20.94        13.91         6.02 
TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A01J TCGA-AG-A01L TCGA-AG-A01W 
       25.94        23.01        17.03         1.02        12.00        70.03 
TCGA-AG-A020 TCGA-AG-A023 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02X 
       10.98        51.98        49.94         1.94        38.93        40.96 
TCGA-AH-6544 TCGA-AH-6547 TCGA-AH-6643 TCGA-AH-6903 TCGA-BM-6198 TCGA-CI-6619 
        0.49         1.45         0.69         1.81        10.19         6.02 
TCGA-CI-6620 TCGA-CI-6622 TCGA-CI-6623 TCGA-CI-6624 TCGA-CL-4957 TCGA-CL-5917 
        6.02         6.94         9.37         4.70        13.97        60.00 
TCGA-CL-5918 TCGA-DC-4749 TCGA-DC-5337 TCGA-DC-5869 TCGA-DC-6155 TCGA-DC-6156 
        7.99        11.01        15.02        12.99        14.01        15.02 
TCGA-DC-6157 TCGA-DC-6158 TCGA-DC-6160 TCGA-DC-6681 TCGA-DC-6682 TCGA-DC-6683 
       36.00         6.97        30.05        12.95        13.02        10.06 
TCGA-DY-A0XA TCGA-DY-A1DC TCGA-DY-A1DD TCGA-DY-A1DE TCGA-DY-A1DF TCGA-DY-A1DG 
      126.41        41.33        57.24       129.27        24.13        51.48 
TCGA-EF-5830 TCGA-EF-5831 TCGA-EI-6506 TCGA-EI-6507 TCGA-EI-6508 TCGA-EI-6509 
        0.49         2.40        20.55        19.96        20.91        17.00 
TCGA-EI-6511 TCGA-EI-6513 TCGA-EI-6514 TCGA-EI-6881 TCGA-EI-6882 TCGA-EI-6883 
       15.85        16.34        16.31        16.37         8.61        11.51 
TCGA-EI-6884 TCGA-EI-6917 TCGA-EI-7004 TCGA-F5-6465 TCGA-F5-6571 TCGA-F5-6702 
       10.78        17.46         8.45         3.39         0.85         2.17 
TCGA-F5-6810 TCGA-F5-6811 TCGA-F5-6812 TCGA-F5-6813 TCGA-F5-6814 TCGA-F5-6861 
        0.39         1.02         0.66         0.69         0.53         1.08 
TCGA-F5-6864 TCGA-G5-6233 TCGA-G5-6572 TCGA-G5-6641 
        0.46        18.25        47.08        26.43 

  AMP PEAK 24(XP22.2) MUTATED AMP PEAK 24(XP22.2) WILD-TYPE 
                         0.72                          0.39 
  AMP PEAK 24(XP22.2) MUTATED AMP PEAK 24(XP22.2) WILD-TYPE 
                        63.98                        129.27 
  AMP PEAK 24(XP22.2) MUTATED AMP PEAK 24(XP22.2) WILD-TYPE 
                       11.985                        10.700 
[1] "0.7 - 64.0 (12.0)"  "0.4 - 129.3 (10.7)"
                   TCGA-AF-2687                    TCGA-AF-2689 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AF-2692                    TCGA-AF-2693 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AF-3400                    TCGA-AF-3911 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AF-3913                    TCGA-AF-4110 
  "AMP PEAK 24(XP22.2) MUTATED" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AF-5654                    TCGA-AF-6136 
  "AMP PEAK 24(XP22.2) MUTATED" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AF-6655                    TCGA-AF-6672 
  "AMP PEAK 24(XP22.2) MUTATED" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-3575                    TCGA-AG-3581 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-3582                    TCGA-AG-3583 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-3586                    TCGA-AG-3587 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-3599                    TCGA-AG-3605 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-3726                    TCGA-AG-3727 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-3731                    TCGA-AG-3742 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-3878                    TCGA-AG-3883 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-3896                    TCGA-AG-3999 
"AMP PEAK 24(XP22.2) WILD-TYPE"   "AMP PEAK 24(XP22.2) MUTATED" 
                   TCGA-AG-4001                    TCGA-AG-4007 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-4008                    TCGA-AG-4022 
"AMP PEAK 24(XP22.2) WILD-TYPE"   "AMP PEAK 24(XP22.2) MUTATED" 
                   TCGA-AG-A002                    TCGA-AG-A008 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-A00C                    TCGA-AG-A00H 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-A00Y                    TCGA-AG-A011 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-A014                    TCGA-AG-A015 
  "AMP PEAK 24(XP22.2) MUTATED"   "AMP PEAK 24(XP22.2) MUTATED" 
                   TCGA-AG-A016                    TCGA-AG-A01J 
  "AMP PEAK 24(XP22.2) MUTATED" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-A01L                    TCGA-AG-A01N 
"AMP PEAK 24(XP22.2) WILD-TYPE"   "AMP PEAK 24(XP22.2) MUTATED" 
                   TCGA-AG-A01W                    TCGA-AG-A01Y 
"AMP PEAK 24(XP22.2) WILD-TYPE"   "AMP PEAK 24(XP22.2) MUTATED" 
                   TCGA-AG-A020                    TCGA-AG-A023 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-A025                    TCGA-AG-A026 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-A02G                    TCGA-AG-A02N 
"AMP PEAK 24(XP22.2) WILD-TYPE"   "AMP PEAK 24(XP22.2) MUTATED" 
                   TCGA-AG-A02X                    TCGA-AG-A032 
"AMP PEAK 24(XP22.2) WILD-TYPE"   "AMP PEAK 24(XP22.2) MUTATED" 
                   TCGA-AH-6544                    TCGA-AH-6547 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AH-6643                    TCGA-AH-6644 
"AMP PEAK 24(XP22.2) WILD-TYPE"   "AMP PEAK 24(XP22.2) MUTATED" 
                   TCGA-AH-6897                    TCGA-AH-6903 
  "AMP PEAK 24(XP22.2) MUTATED" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-BM-6198                    TCGA-CI-6619 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-CI-6620                    TCGA-CI-6622 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-CI-6623                    TCGA-CI-6624 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-CL-4957                    TCGA-CL-5917 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-CL-5918                    TCGA-DC-4745 
"AMP PEAK 24(XP22.2) WILD-TYPE"   "AMP PEAK 24(XP22.2) MUTATED" 
                   TCGA-DC-4749                    TCGA-DC-5337 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-DC-5869                    TCGA-DC-6154 
"AMP PEAK 24(XP22.2) WILD-TYPE"   "AMP PEAK 24(XP22.2) MUTATED" 
                   TCGA-DC-6155                    TCGA-DC-6156 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-DC-6157                    TCGA-DC-6158 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-DC-6160                    TCGA-DC-6681 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-DC-6682                    TCGA-DC-6683 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-DT-5265                    TCGA-DY-A0XA 
  "AMP PEAK 24(XP22.2) MUTATED" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-DY-A1DC                    TCGA-DY-A1DD 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-DY-A1DE                    TCGA-DY-A1DF 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-DY-A1DG                    TCGA-DY-A1H8 
"AMP PEAK 24(XP22.2) WILD-TYPE"   "AMP PEAK 24(XP22.2) MUTATED" 
                   TCGA-EF-5830                    TCGA-EF-5831 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-EI-6506                    TCGA-EI-6507 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-EI-6508                    TCGA-EI-6509 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-EI-6510                    TCGA-EI-6511 
  "AMP PEAK 24(XP22.2) MUTATED" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-EI-6512                    TCGA-EI-6513 
  "AMP PEAK 24(XP22.2) MUTATED" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-EI-6514                    TCGA-EI-6881 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-EI-6882                    TCGA-EI-6883 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-EI-6884                    TCGA-EI-6885 
"AMP PEAK 24(XP22.2) WILD-TYPE"   "AMP PEAK 24(XP22.2) MUTATED" 
                   TCGA-EI-6917                    TCGA-EI-7002 
"AMP PEAK 24(XP22.2) WILD-TYPE"   "AMP PEAK 24(XP22.2) MUTATED" 
                   TCGA-EI-7004                    TCGA-F5-6465 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-F5-6571                    TCGA-F5-6702 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-F5-6810                    TCGA-F5-6811 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-F5-6812                    TCGA-F5-6813 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-F5-6814                    TCGA-F5-6861 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-F5-6863                    TCGA-F5-6864 
  "AMP PEAK 24(XP22.2) MUTATED" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-G5-6233                    TCGA-G5-6235 
"AMP PEAK 24(XP22.2) WILD-TYPE"   "AMP PEAK 24(XP22.2) MUTATED" 
                   TCGA-G5-6572                    TCGA-G5-6641 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AF-2687                    TCGA-AF-2689 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AF-2692                    TCGA-AF-2693 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AF-3400                    TCGA-AF-3911 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AF-3913                    TCGA-AF-4110 
  "AMP PEAK 24(XP22.2) MUTATED" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AF-5654                    TCGA-AF-6136 
  "AMP PEAK 24(XP22.2) MUTATED" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AF-6655                    TCGA-AF-6672 
  "AMP PEAK 24(XP22.2) MUTATED" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-3575                    TCGA-AG-3581 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-3582                    TCGA-AG-3583 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-3586                    TCGA-AG-3587 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-3599                    TCGA-AG-3605 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-3726                    TCGA-AG-3727 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-3731                    TCGA-AG-3742 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-3878                    TCGA-AG-3883 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-3896                    TCGA-AG-3999 
"AMP PEAK 24(XP22.2) WILD-TYPE"   "AMP PEAK 24(XP22.2) MUTATED" 
                   TCGA-AG-4001                    TCGA-AG-4007 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-4008                    TCGA-AG-4022 
"AMP PEAK 24(XP22.2) WILD-TYPE"   "AMP PEAK 24(XP22.2) MUTATED" 
                   TCGA-AG-A002                    TCGA-AG-A008 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-A00C                    TCGA-AG-A00H 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-A00Y                    TCGA-AG-A011 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-A014                    TCGA-AG-A015 
  "AMP PEAK 24(XP22.2) MUTATED"   "AMP PEAK 24(XP22.2) MUTATED" 
                   TCGA-AG-A016                    TCGA-AG-A01J 
  "AMP PEAK 24(XP22.2) MUTATED" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-A01L                    TCGA-AG-A01N 
"AMP PEAK 24(XP22.2) WILD-TYPE"   "AMP PEAK 24(XP22.2) MUTATED" 
                   TCGA-AG-A01W                    TCGA-AG-A01Y 
"AMP PEAK 24(XP22.2) WILD-TYPE"   "AMP PEAK 24(XP22.2) MUTATED" 
                   TCGA-AG-A020                    TCGA-AG-A023 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-A025                    TCGA-AG-A026 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-A02G                    TCGA-AG-A02N 
"AMP PEAK 24(XP22.2) WILD-TYPE"   "AMP PEAK 24(XP22.2) MUTATED" 
                   TCGA-AG-A02X                    TCGA-AG-A032 
"AMP PEAK 24(XP22.2) WILD-TYPE"   "AMP PEAK 24(XP22.2) MUTATED" 
                   TCGA-AH-6544                    TCGA-AH-6547 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AH-6643                    TCGA-AH-6644 
"AMP PEAK 24(XP22.2) WILD-TYPE"   "AMP PEAK 24(XP22.2) MUTATED" 
                   TCGA-AH-6897                    TCGA-AH-6903 
  "AMP PEAK 24(XP22.2) MUTATED" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-BM-6198                    TCGA-CI-6619 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-CI-6620                    TCGA-CI-6622 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-CI-6623                    TCGA-CI-6624 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-CL-4957                    TCGA-CL-5917 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-CL-5918                    TCGA-DC-4745 
"AMP PEAK 24(XP22.2) WILD-TYPE"   "AMP PEAK 24(XP22.2) MUTATED" 
                   TCGA-DC-4749                    TCGA-DC-5337 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-DC-5869                    TCGA-DC-6154 
"AMP PEAK 24(XP22.2) WILD-TYPE"   "AMP PEAK 24(XP22.2) MUTATED" 
                   TCGA-DC-6155                    TCGA-DC-6156 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-DC-6157                    TCGA-DC-6158 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-DC-6160                    TCGA-DC-6681 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-DC-6682                    TCGA-DC-6683 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-DT-5265                    TCGA-DY-A0XA 
  "AMP PEAK 24(XP22.2) MUTATED" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-DY-A1DC                    TCGA-DY-A1DD 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-DY-A1DE                    TCGA-DY-A1DF 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-DY-A1DG                    TCGA-DY-A1H8 
"AMP PEAK 24(XP22.2) WILD-TYPE"   "AMP PEAK 24(XP22.2) MUTATED" 
                   TCGA-EF-5830                    TCGA-EF-5831 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-EI-6506                    TCGA-EI-6507 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-EI-6508                    TCGA-EI-6509 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-EI-6510                    TCGA-EI-6511 
  "AMP PEAK 24(XP22.2) MUTATED" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-EI-6512                    TCGA-EI-6513 
  "AMP PEAK 24(XP22.2) MUTATED" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-EI-6514                    TCGA-EI-6881 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-EI-6882                    TCGA-EI-6883 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-EI-6884                    TCGA-EI-6885 
"AMP PEAK 24(XP22.2) WILD-TYPE"   "AMP PEAK 24(XP22.2) MUTATED" 
                   TCGA-EI-6917                    TCGA-EI-7002 
"AMP PEAK 24(XP22.2) WILD-TYPE"   "AMP PEAK 24(XP22.2) MUTATED" 
                   TCGA-EI-7004                    TCGA-F5-6465 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-F5-6571                    TCGA-F5-6702 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-F5-6810                    TCGA-F5-6811 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-F5-6812                    TCGA-F5-6813 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-F5-6814                    TCGA-F5-6861 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-F5-6863                    TCGA-F5-6864 
  "AMP PEAK 24(XP22.2) MUTATED" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-G5-6233                    TCGA-G5-6235 
"AMP PEAK 24(XP22.2) WILD-TYPE"   "AMP PEAK 24(XP22.2) MUTATED" 
                   TCGA-G5-6572                    TCGA-G5-6641 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AF-2687                    TCGA-AF-2689 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AF-2692                    TCGA-AF-2693 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AF-3400                    TCGA-AF-3911 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AF-3913                    TCGA-AF-4110 
  "AMP PEAK 24(XP22.2) MUTATED" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AF-5654                    TCGA-AF-6136 
  "AMP PEAK 24(XP22.2) MUTATED" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AF-6655                    TCGA-AF-6672 
  "AMP PEAK 24(XP22.2) MUTATED" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-3575                    TCGA-AG-3581 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-3582                    TCGA-AG-3583 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-3586                    TCGA-AG-3587 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-3599                    TCGA-AG-3605 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-3726                    TCGA-AG-3727 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-3731                    TCGA-AG-3742 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-3878                    TCGA-AG-3883 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-3896                    TCGA-AG-3999 
"AMP PEAK 24(XP22.2) WILD-TYPE"   "AMP PEAK 24(XP22.2) MUTATED" 
                   TCGA-AG-4001                    TCGA-AG-4007 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-4008                    TCGA-AG-4022 
"AMP PEAK 24(XP22.2) WILD-TYPE"   "AMP PEAK 24(XP22.2) MUTATED" 
                   TCGA-AG-A002                    TCGA-AG-A008 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-A00C                    TCGA-AG-A00H 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-A00Y                    TCGA-AG-A011 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-A014                    TCGA-AG-A015 
  "AMP PEAK 24(XP22.2) MUTATED"   "AMP PEAK 24(XP22.2) MUTATED" 
                   TCGA-AG-A016                    TCGA-AG-A01J 
  "AMP PEAK 24(XP22.2) MUTATED" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-A01L                    TCGA-AG-A01N 
"AMP PEAK 24(XP22.2) WILD-TYPE"   "AMP PEAK 24(XP22.2) MUTATED" 
                   TCGA-AG-A01W                    TCGA-AG-A01Y 
"AMP PEAK 24(XP22.2) WILD-TYPE"   "AMP PEAK 24(XP22.2) MUTATED" 
                   TCGA-AG-A020                    TCGA-AG-A023 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-A025                    TCGA-AG-A026 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-A02G                    TCGA-AG-A02N 
"AMP PEAK 24(XP22.2) WILD-TYPE"   "AMP PEAK 24(XP22.2) MUTATED" 
                   TCGA-AG-A02X                    TCGA-AG-A032 
"AMP PEAK 24(XP22.2) WILD-TYPE"   "AMP PEAK 24(XP22.2) MUTATED" 
                   TCGA-AH-6544                    TCGA-AH-6547 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AH-6643                    TCGA-AH-6644 
"AMP PEAK 24(XP22.2) WILD-TYPE"   "AMP PEAK 24(XP22.2) MUTATED" 
                   TCGA-AH-6897                    TCGA-AH-6903 
  "AMP PEAK 24(XP22.2) MUTATED" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-BM-6198                    TCGA-CI-6619 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-CI-6620                    TCGA-CI-6622 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-CI-6623                    TCGA-CI-6624 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-CL-4957                    TCGA-CL-5917 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-CL-5918                    TCGA-DC-4745 
"AMP PEAK 24(XP22.2) WILD-TYPE"   "AMP PEAK 24(XP22.2) MUTATED" 
                   TCGA-DC-4749                    TCGA-DC-5337 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-DC-5869                    TCGA-DC-6154 
"AMP PEAK 24(XP22.2) WILD-TYPE"   "AMP PEAK 24(XP22.2) MUTATED" 
                   TCGA-DC-6155                    TCGA-DC-6156 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-DC-6157                    TCGA-DC-6158 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-DC-6160                    TCGA-DC-6681 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-DC-6682                    TCGA-DC-6683 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-DT-5265                    TCGA-DY-A0XA 
  "AMP PEAK 24(XP22.2) MUTATED" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-DY-A1DC                    TCGA-DY-A1DD 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-DY-A1DE                    TCGA-DY-A1DF 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-DY-A1DG                    TCGA-DY-A1H8 
"AMP PEAK 24(XP22.2) WILD-TYPE"   "AMP PEAK 24(XP22.2) MUTATED" 
                   TCGA-EF-5830                    TCGA-EF-5831 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-EI-6506                    TCGA-EI-6507 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-EI-6508                    TCGA-EI-6509 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-EI-6510                    TCGA-EI-6511 
  "AMP PEAK 24(XP22.2) MUTATED" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-EI-6512                    TCGA-EI-6513 
  "AMP PEAK 24(XP22.2) MUTATED" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-EI-6514                    TCGA-EI-6881 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-EI-6882                    TCGA-EI-6883 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-EI-6884                    TCGA-EI-6885 
"AMP PEAK 24(XP22.2) WILD-TYPE"   "AMP PEAK 24(XP22.2) MUTATED" 
                   TCGA-EI-6917                    TCGA-EI-7002 
"AMP PEAK 24(XP22.2) WILD-TYPE"   "AMP PEAK 24(XP22.2) MUTATED" 
                   TCGA-EI-7004                    TCGA-F5-6465 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-F5-6571                    TCGA-F5-6702 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-F5-6810                    TCGA-F5-6811 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-F5-6812                    TCGA-F5-6813 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-F5-6814                    TCGA-F5-6861 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-F5-6863                    TCGA-F5-6864 
  "AMP PEAK 24(XP22.2) MUTATED" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-G5-6233                    TCGA-G5-6235 
"AMP PEAK 24(XP22.2) WILD-TYPE"   "AMP PEAK 24(XP22.2) MUTATED" 
                   TCGA-G5-6572                    TCGA-G5-6641 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
[1] "hr=" "1.7"
D24V2, continuous
                               vv
clus                            STAGE I STAGE II STAGE IIA STAGE IIB STAGE IIC
  AMP PEAK 24(XP22.2) MUTATED         4        5         2         0         0
  AMP PEAK 24(XP22.2) WILD-TYPE      26        3        36         2         2
                               vv
clus                            STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  AMP PEAK 24(XP22.2) MUTATED           0          2          7          2
  AMP PEAK 24(XP22.2) WILD-TYPE         5          7         16         12
                               vv
clus                            STAGE IV STAGE IVA
  AMP PEAK 24(XP22.2) MUTATED          5         2
  AMP PEAK 24(XP22.2) WILD-TYPE       12         7
D24V3, multiclass
                               vv
clus                            T1 T2 T3 T4
  AMP PEAK 24(XP22.2) MUTATED    1  7 20  3
  AMP PEAK 24(XP22.2) WILD-TYPE  8 22 89 11
D24V4, multiclass
    clus
vv   AMP PEAK 24(XP22.2) MUTATED AMP PEAK 24(XP22.2) WILD-TYPE
  T1                           1                             8
  T2                           7                            22
  T3                          20                            89
  T4                           3                            11
                               vv
clus                            N0 N1 N2
  AMP PEAK 24(XP22.2) MUTATED   13 11  6
  AMP PEAK 24(XP22.2) WILD-TYPE 70 34 26
D24V5, multiclass
    clus
vv   AMP PEAK 24(XP22.2) MUTATED AMP PEAK 24(XP22.2) WILD-TYPE
  N0                          13                            70
  N1                          11                            34
  N2                           6                            26
                               vv
clus                             M0  M1 M1A  MX
  AMP PEAK 24(XP22.2) MUTATED    21   7   0   3
  AMP PEAK 24(XP22.2) WILD-TYPE 102  15   2  10
D24V6, multiclass
     clus
vv    AMP PEAK 24(XP22.2) MUTATED AMP PEAK 24(XP22.2) WILD-TYPE
  M0                           21                           102
  M1                            7                            15
  M1A                           0                             2
  MX                            3                            10
D24V7, binary
                               cls
clus                             0  1
  AMP PEAK 24(XP22.2) MUTATED   18 13
  AMP PEAK 24(XP22.2) WILD-TYPE 56 75
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 24(XP22.2) MUTATED     18   13
  AMP PEAK 24(XP22.2) WILD-TYPE   56   75
        clus
vv       AMP PEAK 24(XP22.2) MUTATED AMP PEAK 24(XP22.2) WILD-TYPE
  FEMALE                          18                            56
  MALE                            13                            75
D24V8, binary
                               cls
clus                              0   1
  AMP PEAK 24(XP22.2) MUTATED    30   1
  AMP PEAK 24(XP22.2) WILD-TYPE 113  12
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 24(XP22.2) MUTATED     30    1
  AMP PEAK 24(XP22.2) WILD-TYPE  113   12
                                clus
vv                               AMP PEAK 24(XP22.2) MUTATED
  RECTAL ADENOCARCINOMA                                   30
  RECTAL MUCINOUS ADENOCARCINOMA                           1
                                clus
vv                               AMP PEAK 24(XP22.2) WILD-TYPE
  RECTAL ADENOCARCINOMA                                    113
  RECTAL MUCINOUS ADENOCARCINOMA                            12
D24V9, binary
                               cls
clus                              0   1
  AMP PEAK 24(XP22.2) MUTATED     0  31
  AMP PEAK 24(XP22.2) WILD-TYPE   6 125
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 24(XP22.2) MUTATED      0   31
  AMP PEAK 24(XP22.2) WILD-TYPE    6  125
     clus
vv    AMP PEAK 24(XP22.2) MUTATED AMP PEAK 24(XP22.2) WILD-TYPE
  NO                            0                             6
  YES                          31                           125
                               vv
clus                            R0 R1 R2 RX
  AMP PEAK 24(XP22.2) MUTATED   23  1  4  1
  AMP PEAK 24(XP22.2) WILD-TYPE 98  1  8  2
D24V10, multiclass
    clus
vv   AMP PEAK 24(XP22.2) MUTATED AMP PEAK 24(XP22.2) WILD-TYPE
  R0                          23                            98
  R1                           1                             1
  R2                           4                             8
  RX                           1                             2
D24V11, continuous

Clustering(25) Variable = AMP PEAK 25(XQ27.3) MUTATION ANALYSIS
D25V1, survival
                               sevent
clus2                            0  1
  AMP PEAK 25(XQ27.3) MUTATED   26  2
  AMP PEAK 25(XQ27.3) WILD-TYPE 91 11
  AMP PEAK 25(XQ27.3) MUTATED AMP PEAK 25(XQ27.3) WILD-TYPE 
                           28                           102 
  AMP PEAK 25(XQ27.3) MUTATED AMP PEAK 25(XQ27.3) WILD-TYPE 
                            2                            11 
$`AMP PEAK 25(XQ27.3) MUTATED`
TCGA-AF-2692 TCGA-AF-2693 TCGA-AF-3913 TCGA-AF-5654 TCGA-AG-3575 TCGA-AG-3587 
       13.55        19.10        10.39         8.45        12.00         1.02 
TCGA-AG-3726 TCGA-AG-3893 TCGA-AG-3999 TCGA-AG-4007 TCGA-AG-4022 TCGA-AG-A014 
        7.96         0.99         1.02         1.02         0.99        15.91 
TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A02X TCGA-AG-A032 TCGA-AH-6644 TCGA-CI-6623 
       13.02         1.02        40.96        38.01         0.72         9.37 
TCGA-CL-5917 TCGA-DC-4745 TCGA-DC-6154 TCGA-DC-6156 TCGA-DY-A1DD TCGA-DY-A1DE 
       60.00        10.98        12.00        15.02        57.24       129.27 
TCGA-EI-6885 TCGA-F5-6465 TCGA-F5-6810 TCGA-F5-6863 
       13.61         3.39         0.39         0.76 

$`AMP PEAK 25(XQ27.3) WILD-TYPE`
TCGA-AF-2687 TCGA-AF-2689 TCGA-AF-2690 TCGA-AF-2691 TCGA-AF-3400 TCGA-AF-3911 
       24.13        17.95        17.23        10.62        12.72        25.02 
TCGA-AF-4110 TCGA-AF-6136 TCGA-AF-6655 TCGA-AF-6672 TCGA-AG-3581 TCGA-AG-3582 
       14.50        15.35        11.67        10.39         1.02         1.02 
TCGA-AG-3583 TCGA-AG-3586 TCGA-AG-3599 TCGA-AG-3605 TCGA-AG-3727 TCGA-AG-3731 
        2.01         1.02         0.99         0.99         0.95         1.02 
TCGA-AG-3742 TCGA-AG-3878 TCGA-AG-3883 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3894 
        0.99         0.99         1.02         0.92         1.02         0.99 
TCGA-AG-3896 TCGA-AG-4001 TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C 
        1.02         1.02         1.02        20.94        13.91         6.02 
TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A01J TCGA-AG-A01L TCGA-AG-A01N 
       25.94        23.01        17.03         1.02        12.00        12.00 
TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A023 TCGA-AG-A025 TCGA-AG-A026 
       70.03        63.98        10.98        51.98        49.94         1.94 
TCGA-AG-A02G TCGA-AG-A02N TCGA-AH-6544 TCGA-AH-6547 TCGA-AH-6643 TCGA-AH-6897 
       38.93        61.94         0.49         1.45         0.69         4.60 
TCGA-AH-6903 TCGA-BM-6198 TCGA-CI-6619 TCGA-CI-6620 TCGA-CI-6622 TCGA-CI-6624 
        1.81        10.19         6.02         6.02         6.94         4.70 
TCGA-CL-4957 TCGA-CL-5918 TCGA-DC-4749 TCGA-DC-5337 TCGA-DC-5869 TCGA-DC-6155 
       13.97         7.99        11.01        15.02        12.99        14.01 
TCGA-DC-6157 TCGA-DC-6158 TCGA-DC-6160 TCGA-DC-6681 TCGA-DC-6682 TCGA-DC-6683 
       36.00         6.97        30.05        12.95        13.02        10.06 
TCGA-DT-5265 TCGA-DY-A0XA TCGA-DY-A1DC TCGA-DY-A1DF TCGA-DY-A1DG TCGA-DY-A1H8 
        5.29       126.41        41.33        24.13        51.48        32.58 
TCGA-EF-5830 TCGA-EF-5831 TCGA-EI-6506 TCGA-EI-6507 TCGA-EI-6508 TCGA-EI-6509 
        0.49         2.40        20.55        19.96        20.91        17.00 
TCGA-EI-6510 TCGA-EI-6511 TCGA-EI-6512 TCGA-EI-6513 TCGA-EI-6514 TCGA-EI-6881 
       18.28        15.85        17.69        16.34        16.31        16.37 
TCGA-EI-6882 TCGA-EI-6883 TCGA-EI-6884 TCGA-EI-6917 TCGA-EI-7002 TCGA-EI-7004 
        8.61        11.51        10.78        17.46        11.97         8.45 
TCGA-F5-6571 TCGA-F5-6702 TCGA-F5-6811 TCGA-F5-6812 TCGA-F5-6813 TCGA-F5-6814 
        0.85         2.17         1.02         0.66         0.69         0.53 
TCGA-F5-6861 TCGA-F5-6864 TCGA-G5-6233 TCGA-G5-6235 TCGA-G5-6572 TCGA-G5-6641 
        1.08         0.46        18.25        55.76        47.08        26.43 

  AMP PEAK 25(XQ27.3) MUTATED AMP PEAK 25(XQ27.3) WILD-TYPE 
                         0.39                          0.46 
  AMP PEAK 25(XQ27.3) MUTATED AMP PEAK 25(XQ27.3) WILD-TYPE 
                       129.27                        126.41 
  AMP PEAK 25(XQ27.3) MUTATED AMP PEAK 25(XQ27.3) WILD-TYPE 
                       10.685                        11.260 
[1] "0.4 - 129.3 (10.7)" "0.5 - 126.4 (11.3)"
                   TCGA-AF-2687                    TCGA-AF-2689 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AF-2692                    TCGA-AF-2693 
  "AMP PEAK 25(XQ27.3) MUTATED"   "AMP PEAK 25(XQ27.3) MUTATED" 
                   TCGA-AF-3400                    TCGA-AF-3911 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AF-3913                    TCGA-AF-4110 
  "AMP PEAK 25(XQ27.3) MUTATED" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AF-5654                    TCGA-AF-6136 
  "AMP PEAK 25(XQ27.3) MUTATED" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-3575                    TCGA-AG-3581 
  "AMP PEAK 25(XQ27.3) MUTATED" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-3582                    TCGA-AG-3583 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-3586                    TCGA-AG-3587 
"AMP PEAK 25(XQ27.3) WILD-TYPE"   "AMP PEAK 25(XQ27.3) MUTATED" 
                   TCGA-AG-3599                    TCGA-AG-3605 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-3726                    TCGA-AG-3727 
  "AMP PEAK 25(XQ27.3) MUTATED" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-3731                    TCGA-AG-3742 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-3878                    TCGA-AG-3883 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
  "AMP PEAK 25(XQ27.3) MUTATED" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-3896                    TCGA-AG-3999 
"AMP PEAK 25(XQ27.3) WILD-TYPE"   "AMP PEAK 25(XQ27.3) MUTATED" 
                   TCGA-AG-4001                    TCGA-AG-4007 
"AMP PEAK 25(XQ27.3) WILD-TYPE"   "AMP PEAK 25(XQ27.3) MUTATED" 
                   TCGA-AG-4008                    TCGA-AG-4022 
"AMP PEAK 25(XQ27.3) WILD-TYPE"   "AMP PEAK 25(XQ27.3) MUTATED" 
                   TCGA-AG-A002                    TCGA-AG-A008 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-A00C                    TCGA-AG-A00H 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-A00Y                    TCGA-AG-A011 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-A014                    TCGA-AG-A015 
  "AMP PEAK 25(XQ27.3) MUTATED"   "AMP PEAK 25(XQ27.3) MUTATED" 
                   TCGA-AG-A016                    TCGA-AG-A01J 
  "AMP PEAK 25(XQ27.3) MUTATED" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-A01L                    TCGA-AG-A01N 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-A01W                    TCGA-AG-A01Y 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-A020                    TCGA-AG-A023 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-A025                    TCGA-AG-A026 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-A02G                    TCGA-AG-A02N 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-A02X                    TCGA-AG-A032 
  "AMP PEAK 25(XQ27.3) MUTATED"   "AMP PEAK 25(XQ27.3) MUTATED" 
                   TCGA-AH-6544                    TCGA-AH-6547 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AH-6643                    TCGA-AH-6644 
"AMP PEAK 25(XQ27.3) WILD-TYPE"   "AMP PEAK 25(XQ27.3) MUTATED" 
                   TCGA-AH-6897                    TCGA-AH-6903 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-BM-6198                    TCGA-CI-6619 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-CI-6620                    TCGA-CI-6622 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-CI-6623                    TCGA-CI-6624 
  "AMP PEAK 25(XQ27.3) MUTATED" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-CL-4957                    TCGA-CL-5917 
"AMP PEAK 25(XQ27.3) WILD-TYPE"   "AMP PEAK 25(XQ27.3) MUTATED" 
                   TCGA-CL-5918                    TCGA-DC-4745 
"AMP PEAK 25(XQ27.3) WILD-TYPE"   "AMP PEAK 25(XQ27.3) MUTATED" 
                   TCGA-DC-4749                    TCGA-DC-5337 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-DC-5869                    TCGA-DC-6154 
"AMP PEAK 25(XQ27.3) WILD-TYPE"   "AMP PEAK 25(XQ27.3) MUTATED" 
                   TCGA-DC-6155                    TCGA-DC-6156 
"AMP PEAK 25(XQ27.3) WILD-TYPE"   "AMP PEAK 25(XQ27.3) MUTATED" 
                   TCGA-DC-6157                    TCGA-DC-6158 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-DC-6160                    TCGA-DC-6681 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-DC-6682                    TCGA-DC-6683 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-DT-5265                    TCGA-DY-A0XA 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-DY-A1DC                    TCGA-DY-A1DD 
"AMP PEAK 25(XQ27.3) WILD-TYPE"   "AMP PEAK 25(XQ27.3) MUTATED" 
                   TCGA-DY-A1DE                    TCGA-DY-A1DF 
  "AMP PEAK 25(XQ27.3) MUTATED" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-DY-A1DG                    TCGA-DY-A1H8 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-EF-5830                    TCGA-EF-5831 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-EI-6506                    TCGA-EI-6507 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-EI-6508                    TCGA-EI-6509 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-EI-6510                    TCGA-EI-6511 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-EI-6512                    TCGA-EI-6513 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-EI-6514                    TCGA-EI-6881 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-EI-6882                    TCGA-EI-6883 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-EI-6884                    TCGA-EI-6885 
"AMP PEAK 25(XQ27.3) WILD-TYPE"   "AMP PEAK 25(XQ27.3) MUTATED" 
                   TCGA-EI-6917                    TCGA-EI-7002 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-EI-7004                    TCGA-F5-6465 
"AMP PEAK 25(XQ27.3) WILD-TYPE"   "AMP PEAK 25(XQ27.3) MUTATED" 
                   TCGA-F5-6571                    TCGA-F5-6702 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-F5-6810                    TCGA-F5-6811 
  "AMP PEAK 25(XQ27.3) MUTATED" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-F5-6812                    TCGA-F5-6813 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-F5-6814                    TCGA-F5-6861 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-F5-6863                    TCGA-F5-6864 
  "AMP PEAK 25(XQ27.3) MUTATED" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-G5-6233                    TCGA-G5-6235 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-G5-6572                    TCGA-G5-6641 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AF-2687                    TCGA-AF-2689 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AF-2692                    TCGA-AF-2693 
  "AMP PEAK 25(XQ27.3) MUTATED"   "AMP PEAK 25(XQ27.3) MUTATED" 
                   TCGA-AF-3400                    TCGA-AF-3911 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AF-3913                    TCGA-AF-4110 
  "AMP PEAK 25(XQ27.3) MUTATED" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AF-5654                    TCGA-AF-6136 
  "AMP PEAK 25(XQ27.3) MUTATED" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-3575                    TCGA-AG-3581 
  "AMP PEAK 25(XQ27.3) MUTATED" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-3582                    TCGA-AG-3583 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-3586                    TCGA-AG-3587 
"AMP PEAK 25(XQ27.3) WILD-TYPE"   "AMP PEAK 25(XQ27.3) MUTATED" 
                   TCGA-AG-3599                    TCGA-AG-3605 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-3726                    TCGA-AG-3727 
  "AMP PEAK 25(XQ27.3) MUTATED" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-3731                    TCGA-AG-3742 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-3878                    TCGA-AG-3883 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
  "AMP PEAK 25(XQ27.3) MUTATED" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-3896                    TCGA-AG-3999 
"AMP PEAK 25(XQ27.3) WILD-TYPE"   "AMP PEAK 25(XQ27.3) MUTATED" 
                   TCGA-AG-4001                    TCGA-AG-4007 
"AMP PEAK 25(XQ27.3) WILD-TYPE"   "AMP PEAK 25(XQ27.3) MUTATED" 
                   TCGA-AG-4008                    TCGA-AG-4022 
"AMP PEAK 25(XQ27.3) WILD-TYPE"   "AMP PEAK 25(XQ27.3) MUTATED" 
                   TCGA-AG-A002                    TCGA-AG-A008 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-A00C                    TCGA-AG-A00H 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-A00Y                    TCGA-AG-A011 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-A014                    TCGA-AG-A015 
  "AMP PEAK 25(XQ27.3) MUTATED"   "AMP PEAK 25(XQ27.3) MUTATED" 
                   TCGA-AG-A016                    TCGA-AG-A01J 
  "AMP PEAK 25(XQ27.3) MUTATED" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-A01L                    TCGA-AG-A01N 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-A01W                    TCGA-AG-A01Y 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-A020                    TCGA-AG-A023 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-A025                    TCGA-AG-A026 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-A02G                    TCGA-AG-A02N 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-A02X                    TCGA-AG-A032 
  "AMP PEAK 25(XQ27.3) MUTATED"   "AMP PEAK 25(XQ27.3) MUTATED" 
                   TCGA-AH-6544                    TCGA-AH-6547 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AH-6643                    TCGA-AH-6644 
"AMP PEAK 25(XQ27.3) WILD-TYPE"   "AMP PEAK 25(XQ27.3) MUTATED" 
                   TCGA-AH-6897                    TCGA-AH-6903 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-BM-6198                    TCGA-CI-6619 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-CI-6620                    TCGA-CI-6622 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-CI-6623                    TCGA-CI-6624 
  "AMP PEAK 25(XQ27.3) MUTATED" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-CL-4957                    TCGA-CL-5917 
"AMP PEAK 25(XQ27.3) WILD-TYPE"   "AMP PEAK 25(XQ27.3) MUTATED" 
                   TCGA-CL-5918                    TCGA-DC-4745 
"AMP PEAK 25(XQ27.3) WILD-TYPE"   "AMP PEAK 25(XQ27.3) MUTATED" 
                   TCGA-DC-4749                    TCGA-DC-5337 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-DC-5869                    TCGA-DC-6154 
"AMP PEAK 25(XQ27.3) WILD-TYPE"   "AMP PEAK 25(XQ27.3) MUTATED" 
                   TCGA-DC-6155                    TCGA-DC-6156 
"AMP PEAK 25(XQ27.3) WILD-TYPE"   "AMP PEAK 25(XQ27.3) MUTATED" 
                   TCGA-DC-6157                    TCGA-DC-6158 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-DC-6160                    TCGA-DC-6681 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-DC-6682                    TCGA-DC-6683 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-DT-5265                    TCGA-DY-A0XA 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-DY-A1DC                    TCGA-DY-A1DD 
"AMP PEAK 25(XQ27.3) WILD-TYPE"   "AMP PEAK 25(XQ27.3) MUTATED" 
                   TCGA-DY-A1DE                    TCGA-DY-A1DF 
  "AMP PEAK 25(XQ27.3) MUTATED" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-DY-A1DG                    TCGA-DY-A1H8 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-EF-5830                    TCGA-EF-5831 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-EI-6506                    TCGA-EI-6507 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-EI-6508                    TCGA-EI-6509 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-EI-6510                    TCGA-EI-6511 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-EI-6512                    TCGA-EI-6513 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-EI-6514                    TCGA-EI-6881 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-EI-6882                    TCGA-EI-6883 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-EI-6884                    TCGA-EI-6885 
"AMP PEAK 25(XQ27.3) WILD-TYPE"   "AMP PEAK 25(XQ27.3) MUTATED" 
                   TCGA-EI-6917                    TCGA-EI-7002 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-EI-7004                    TCGA-F5-6465 
"AMP PEAK 25(XQ27.3) WILD-TYPE"   "AMP PEAK 25(XQ27.3) MUTATED" 
                   TCGA-F5-6571                    TCGA-F5-6702 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-F5-6810                    TCGA-F5-6811 
  "AMP PEAK 25(XQ27.3) MUTATED" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-F5-6812                    TCGA-F5-6813 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-F5-6814                    TCGA-F5-6861 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-F5-6863                    TCGA-F5-6864 
  "AMP PEAK 25(XQ27.3) MUTATED" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-G5-6233                    TCGA-G5-6235 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-G5-6572                    TCGA-G5-6641 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AF-2687                    TCGA-AF-2689 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AF-2692                    TCGA-AF-2693 
  "AMP PEAK 25(XQ27.3) MUTATED"   "AMP PEAK 25(XQ27.3) MUTATED" 
                   TCGA-AF-3400                    TCGA-AF-3911 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AF-3913                    TCGA-AF-4110 
  "AMP PEAK 25(XQ27.3) MUTATED" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AF-5654                    TCGA-AF-6136 
  "AMP PEAK 25(XQ27.3) MUTATED" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-3575                    TCGA-AG-3581 
  "AMP PEAK 25(XQ27.3) MUTATED" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-3582                    TCGA-AG-3583 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-3586                    TCGA-AG-3587 
"AMP PEAK 25(XQ27.3) WILD-TYPE"   "AMP PEAK 25(XQ27.3) MUTATED" 
                   TCGA-AG-3599                    TCGA-AG-3605 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-3726                    TCGA-AG-3727 
  "AMP PEAK 25(XQ27.3) MUTATED" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-3731                    TCGA-AG-3742 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-3878                    TCGA-AG-3883 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
  "AMP PEAK 25(XQ27.3) MUTATED" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-3896                    TCGA-AG-3999 
"AMP PEAK 25(XQ27.3) WILD-TYPE"   "AMP PEAK 25(XQ27.3) MUTATED" 
                   TCGA-AG-4001                    TCGA-AG-4007 
"AMP PEAK 25(XQ27.3) WILD-TYPE"   "AMP PEAK 25(XQ27.3) MUTATED" 
                   TCGA-AG-4008                    TCGA-AG-4022 
"AMP PEAK 25(XQ27.3) WILD-TYPE"   "AMP PEAK 25(XQ27.3) MUTATED" 
                   TCGA-AG-A002                    TCGA-AG-A008 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-A00C                    TCGA-AG-A00H 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-A00Y                    TCGA-AG-A011 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-A014                    TCGA-AG-A015 
  "AMP PEAK 25(XQ27.3) MUTATED"   "AMP PEAK 25(XQ27.3) MUTATED" 
                   TCGA-AG-A016                    TCGA-AG-A01J 
  "AMP PEAK 25(XQ27.3) MUTATED" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-A01L                    TCGA-AG-A01N 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-A01W                    TCGA-AG-A01Y 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-A020                    TCGA-AG-A023 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-A025                    TCGA-AG-A026 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-A02G                    TCGA-AG-A02N 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-A02X                    TCGA-AG-A032 
  "AMP PEAK 25(XQ27.3) MUTATED"   "AMP PEAK 25(XQ27.3) MUTATED" 
                   TCGA-AH-6544                    TCGA-AH-6547 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AH-6643                    TCGA-AH-6644 
"AMP PEAK 25(XQ27.3) WILD-TYPE"   "AMP PEAK 25(XQ27.3) MUTATED" 
                   TCGA-AH-6897                    TCGA-AH-6903 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-BM-6198                    TCGA-CI-6619 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-CI-6620                    TCGA-CI-6622 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-CI-6623                    TCGA-CI-6624 
  "AMP PEAK 25(XQ27.3) MUTATED" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-CL-4957                    TCGA-CL-5917 
"AMP PEAK 25(XQ27.3) WILD-TYPE"   "AMP PEAK 25(XQ27.3) MUTATED" 
                   TCGA-CL-5918                    TCGA-DC-4745 
"AMP PEAK 25(XQ27.3) WILD-TYPE"   "AMP PEAK 25(XQ27.3) MUTATED" 
                   TCGA-DC-4749                    TCGA-DC-5337 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-DC-5869                    TCGA-DC-6154 
"AMP PEAK 25(XQ27.3) WILD-TYPE"   "AMP PEAK 25(XQ27.3) MUTATED" 
                   TCGA-DC-6155                    TCGA-DC-6156 
"AMP PEAK 25(XQ27.3) WILD-TYPE"   "AMP PEAK 25(XQ27.3) MUTATED" 
                   TCGA-DC-6157                    TCGA-DC-6158 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-DC-6160                    TCGA-DC-6681 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-DC-6682                    TCGA-DC-6683 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-DT-5265                    TCGA-DY-A0XA 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-DY-A1DC                    TCGA-DY-A1DD 
"AMP PEAK 25(XQ27.3) WILD-TYPE"   "AMP PEAK 25(XQ27.3) MUTATED" 
                   TCGA-DY-A1DE                    TCGA-DY-A1DF 
  "AMP PEAK 25(XQ27.3) MUTATED" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-DY-A1DG                    TCGA-DY-A1H8 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-EF-5830                    TCGA-EF-5831 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-EI-6506                    TCGA-EI-6507 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-EI-6508                    TCGA-EI-6509 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-EI-6510                    TCGA-EI-6511 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-EI-6512                    TCGA-EI-6513 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-EI-6514                    TCGA-EI-6881 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-EI-6882                    TCGA-EI-6883 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-EI-6884                    TCGA-EI-6885 
"AMP PEAK 25(XQ27.3) WILD-TYPE"   "AMP PEAK 25(XQ27.3) MUTATED" 
                   TCGA-EI-6917                    TCGA-EI-7002 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-EI-7004                    TCGA-F5-6465 
"AMP PEAK 25(XQ27.3) WILD-TYPE"   "AMP PEAK 25(XQ27.3) MUTATED" 
                   TCGA-F5-6571                    TCGA-F5-6702 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-F5-6810                    TCGA-F5-6811 
  "AMP PEAK 25(XQ27.3) MUTATED" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-F5-6812                    TCGA-F5-6813 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-F5-6814                    TCGA-F5-6861 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-F5-6863                    TCGA-F5-6864 
  "AMP PEAK 25(XQ27.3) MUTATED" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-G5-6233                    TCGA-G5-6235 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-G5-6572                    TCGA-G5-6641 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
[1] "hr=" "1.9"
D25V2, continuous
                               vv
clus                            STAGE I STAGE II STAGE IIA STAGE IIB STAGE IIC
  AMP PEAK 25(XQ27.3) MUTATED         8        2         6         0         0
  AMP PEAK 25(XQ27.3) WILD-TYPE      22        6        32         2         2
                               vv
clus                            STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  AMP PEAK 25(XQ27.3) MUTATED           0          0          8          4
  AMP PEAK 25(XQ27.3) WILD-TYPE         5          9         15         10
                               vv
clus                            STAGE IV STAGE IVA
  AMP PEAK 25(XQ27.3) MUTATED          4         2
  AMP PEAK 25(XQ27.3) WILD-TYPE       13         7
D25V3, multiclass
                               vv
clus                            T1 T2 T3 T4
  AMP PEAK 25(XQ27.3) MUTATED    2  6 22  6
  AMP PEAK 25(XQ27.3) WILD-TYPE  7 23 87  8
D25V4, multiclass
    clus
vv   AMP PEAK 25(XQ27.3) MUTATED AMP PEAK 25(XQ27.3) WILD-TYPE
  T1                           2                             7
  T2                           6                            23
  T3                          22                            87
  T4                           6                             8
                               vv
clus                            N0 N1 N2
  AMP PEAK 25(XQ27.3) MUTATED   16 10  9
  AMP PEAK 25(XQ27.3) WILD-TYPE 67 35 23
D25V5, multiclass
    clus
vv   AMP PEAK 25(XQ27.3) MUTATED AMP PEAK 25(XQ27.3) WILD-TYPE
  N0                          16                            67
  N1                          10                            35
  N2                           9                            23
                               vv
clus                            M0 M1 M1A MX
  AMP PEAK 25(XQ27.3) MUTATED   26  6   1  3
  AMP PEAK 25(XQ27.3) WILD-TYPE 97 16   1 10
D25V6, multiclass
     clus
vv    AMP PEAK 25(XQ27.3) MUTATED AMP PEAK 25(XQ27.3) WILD-TYPE
  M0                           26                            97
  M1                            6                            16
  M1A                           1                             1
  MX                            3                            10
D25V7, binary
                               cls
clus                             0  1
  AMP PEAK 25(XQ27.3) MUTATED   19 17
  AMP PEAK 25(XQ27.3) WILD-TYPE 55 71
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 25(XQ27.3) MUTATED     19   17
  AMP PEAK 25(XQ27.3) WILD-TYPE   55   71
        clus
vv       AMP PEAK 25(XQ27.3) MUTATED AMP PEAK 25(XQ27.3) WILD-TYPE
  FEMALE                          19                            55
  MALE                            17                            71
D25V8, binary
                               cls
clus                              0   1
  AMP PEAK 25(XQ27.3) MUTATED    32   1
  AMP PEAK 25(XQ27.3) WILD-TYPE 111  12
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 25(XQ27.3) MUTATED     32    1
  AMP PEAK 25(XQ27.3) WILD-TYPE  111   12
                                clus
vv                               AMP PEAK 25(XQ27.3) MUTATED
  RECTAL ADENOCARCINOMA                                   32
  RECTAL MUCINOUS ADENOCARCINOMA                           1
                                clus
vv                               AMP PEAK 25(XQ27.3) WILD-TYPE
  RECTAL ADENOCARCINOMA                                    111
  RECTAL MUCINOUS ADENOCARCINOMA                            12
D25V9, binary
                               cls
clus                              0   1
  AMP PEAK 25(XQ27.3) MUTATED     0  36
  AMP PEAK 25(XQ27.3) WILD-TYPE   6 120
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 25(XQ27.3) MUTATED      0   36
  AMP PEAK 25(XQ27.3) WILD-TYPE    6  120
     clus
vv    AMP PEAK 25(XQ27.3) MUTATED AMP PEAK 25(XQ27.3) WILD-TYPE
  NO                            0                             6
  YES                          36                           120
                               vv
clus                            R0 R1 R2 RX
  AMP PEAK 25(XQ27.3) MUTATED   25  0  4  1
  AMP PEAK 25(XQ27.3) WILD-TYPE 96  2  8  2
D25V10, multiclass
    clus
vv   AMP PEAK 25(XQ27.3) MUTATED AMP PEAK 25(XQ27.3) WILD-TYPE
  R0                          25                            96
  R1                           0                             2
  R2                           4                             8
  RX                           1                             2
D25V11, continuous

Clustering(26) Variable = DEL PEAK  1(1P36.11) MUTATION ANALYSIS
D26V1, survival
                                sevent
clus2                             0  1
  DEL PEAK  1(1P36.11) MUTATED   50  7
  DEL PEAK  1(1P36.11) WILD-TYPE 67  6
  DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE 
                            57                             73 
  DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE 
                             7                              6 
$`DEL PEAK  1(1P36.11) MUTATED`
TCGA-AF-2687 TCGA-AF-2690 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-2693 TCGA-AF-3913 
       24.13        17.23        10.62        13.55        19.10        10.39 
TCGA-AF-4110 TCGA-AF-6136 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3727 
       14.50        15.35         1.02         2.01         1.02         0.95 
TCGA-AG-3731 TCGA-AG-3883 TCGA-AG-3887 TCGA-AG-3896 TCGA-AG-3999 TCGA-AG-4001 
        1.02         1.02         0.92         1.02         1.02         1.02 
TCGA-AG-A008 TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y 
       13.91        25.94        23.01        12.00        70.03        63.98 
TCGA-AG-A023 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A032 TCGA-AH-6544 TCGA-AH-6643 
       51.98         1.94        38.93        38.01         0.49         0.69 
TCGA-BM-6198 TCGA-CI-6622 TCGA-CI-6624 TCGA-DC-4749 TCGA-DC-5869 TCGA-DC-6154 
       10.19         6.94         4.70        11.01        12.99        12.00 
TCGA-DC-6155 TCGA-DC-6156 TCGA-DC-6157 TCGA-DC-6160 TCGA-DC-6681 TCGA-DC-6683 
       14.01        15.02        36.00        30.05        12.95        10.06 
TCGA-DY-A0XA TCGA-DY-A1DE TCGA-DY-A1H8 TCGA-EF-5830 TCGA-EF-5831 TCGA-EI-6506 
      126.41       129.27        32.58         0.49         2.40        20.55 
TCGA-EI-6511 TCGA-EI-7002 TCGA-EI-7004 TCGA-F5-6702 TCGA-F5-6811 TCGA-F5-6813 
       15.85        11.97         8.45         2.17         1.02         0.69 
TCGA-F5-6864 TCGA-G5-6572 TCGA-G5-6641 
        0.46        47.08        26.43 

$`DEL PEAK  1(1P36.11) WILD-TYPE`
TCGA-AF-2689 TCGA-AF-3400 TCGA-AF-3911 TCGA-AF-5654 TCGA-AF-6655 TCGA-AF-6672 
       17.95        12.72        25.02         8.45        11.67        10.39 
TCGA-AG-3575 TCGA-AG-3581 TCGA-AG-3586 TCGA-AG-3599 TCGA-AG-3605 TCGA-AG-3726 
       12.00         1.02         1.02         0.99         0.99         7.96 
TCGA-AG-3742 TCGA-AG-3878 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-4007 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AG-4008 TCGA-AG-4022 TCGA-AG-A002 TCGA-AG-A00C TCGA-AG-A011 TCGA-AG-A014 
        1.02         0.99        20.94         6.02        17.03        15.91 
TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01J TCGA-AG-A01N TCGA-AG-A020 TCGA-AG-A025 
       13.02         1.02         1.02        12.00        10.98        49.94 
TCGA-AG-A02N TCGA-AG-A02X TCGA-AH-6547 TCGA-AH-6644 TCGA-AH-6897 TCGA-AH-6903 
       61.94        40.96         1.45         0.72         4.60         1.81 
TCGA-CI-6619 TCGA-CI-6620 TCGA-CI-6623 TCGA-CL-4957 TCGA-CL-5917 TCGA-CL-5918 
        6.02         6.02         9.37        13.97        60.00         7.99 
TCGA-DC-4745 TCGA-DC-5337 TCGA-DC-6158 TCGA-DC-6682 TCGA-DT-5265 TCGA-DY-A1DC 
       10.98        15.02         6.97        13.02         5.29        41.33 
TCGA-DY-A1DD TCGA-DY-A1DF TCGA-DY-A1DG TCGA-EI-6507 TCGA-EI-6508 TCGA-EI-6509 
       57.24        24.13        51.48        19.96        20.91        17.00 
TCGA-EI-6510 TCGA-EI-6512 TCGA-EI-6513 TCGA-EI-6514 TCGA-EI-6881 TCGA-EI-6882 
       18.28        17.69        16.34        16.31        16.37         8.61 
TCGA-EI-6883 TCGA-EI-6884 TCGA-EI-6885 TCGA-EI-6917 TCGA-F5-6465 TCGA-F5-6571 
       11.51        10.78        13.61        17.46         3.39         0.85 
TCGA-F5-6810 TCGA-F5-6812 TCGA-F5-6814 TCGA-F5-6861 TCGA-F5-6863 TCGA-G5-6233 
        0.39         0.66         0.53         1.08         0.76        18.25 
TCGA-G5-6235 
       55.76 

  DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE 
                          0.46                           0.39 
  DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE 
                        129.27                          61.94 
  DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE 
                         12.00                          10.78 
[1] "0.5 - 129.3 (12.0)" "0.4 - 61.9 (10.8)" 
                    TCGA-AF-2687                     TCGA-AF-2689 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-AF-2692                     TCGA-AF-2693 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-3575                     TCGA-AG-3581 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-3582                     TCGA-AG-3583 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-AG-3731                     TCGA-AG-3742 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-AG-3887                     TCGA-AG-3892 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-AG-4001                     TCGA-AG-4007 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-4008                     TCGA-AG-4022 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-AH-6544                     TCGA-AH-6547 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AH-6897                     TCGA-AH-6903 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-CI-6623                     TCGA-CI-6624 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-CL-4957                     TCGA-CL-5917 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CL-5918                     TCGA-DC-4745 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-DC-4749                     TCGA-DC-5337 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-DC-6155                     TCGA-DC-6156 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-DC-6157                     TCGA-DC-6158 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-DC-6160                     TCGA-DC-6681 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-DC-6682                     TCGA-DC-6683 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-EF-5830                     TCGA-EF-5831 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-EI-6506                     TCGA-EI-6507 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-EI-6512                     TCGA-EI-6513 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-EI-6514                     TCGA-EI-6881 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-EI-6884                     TCGA-EI-6885 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-EI-7004                     TCGA-F5-6465 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-F5-6571                     TCGA-F5-6702 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-F5-6810                     TCGA-F5-6811 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-F5-6812                     TCGA-F5-6813 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-G5-6233                     TCGA-G5-6235 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-G5-6572                     TCGA-G5-6641 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-AF-2687                     TCGA-AF-2689 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-AF-2692                     TCGA-AF-2693 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-3575                     TCGA-AG-3581 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-3582                     TCGA-AG-3583 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-AG-3731                     TCGA-AG-3742 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-AG-3887                     TCGA-AG-3892 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-AG-4001                     TCGA-AG-4007 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-4008                     TCGA-AG-4022 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-AH-6544                     TCGA-AH-6547 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AH-6897                     TCGA-AH-6903 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-CI-6623                     TCGA-CI-6624 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-CL-4957                     TCGA-CL-5917 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CL-5918                     TCGA-DC-4745 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-DC-4749                     TCGA-DC-5337 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-DC-6155                     TCGA-DC-6156 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-DC-6157                     TCGA-DC-6158 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-DC-6160                     TCGA-DC-6681 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-DC-6682                     TCGA-DC-6683 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-EF-5830                     TCGA-EF-5831 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-EI-6506                     TCGA-EI-6507 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-EI-6512                     TCGA-EI-6513 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-EI-6514                     TCGA-EI-6881 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-EI-6884                     TCGA-EI-6885 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-EI-7004                     TCGA-F5-6465 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-F5-6571                     TCGA-F5-6702 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-F5-6810                     TCGA-F5-6811 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-F5-6812                     TCGA-F5-6813 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-G5-6233                     TCGA-G5-6235 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-G5-6572                     TCGA-G5-6641 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-AF-2687                     TCGA-AF-2689 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-AF-2692                     TCGA-AF-2693 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-3575                     TCGA-AG-3581 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-3582                     TCGA-AG-3583 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-AG-3731                     TCGA-AG-3742 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-AG-3887                     TCGA-AG-3892 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-AG-4001                     TCGA-AG-4007 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-4008                     TCGA-AG-4022 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-AH-6544                     TCGA-AH-6547 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AH-6897                     TCGA-AH-6903 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-CI-6623                     TCGA-CI-6624 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-CL-4957                     TCGA-CL-5917 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CL-5918                     TCGA-DC-4745 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-DC-4749                     TCGA-DC-5337 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-DC-6155                     TCGA-DC-6156 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-DC-6157                     TCGA-DC-6158 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-DC-6160                     TCGA-DC-6681 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-DC-6682                     TCGA-DC-6683 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-EF-5830                     TCGA-EF-5831 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-EI-6506                     TCGA-EI-6507 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-EI-6512                     TCGA-EI-6513 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-EI-6514                     TCGA-EI-6881 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-EI-6884                     TCGA-EI-6885 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-EI-7004                     TCGA-F5-6465 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-F5-6571                     TCGA-F5-6702 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-F5-6810                     TCGA-F5-6811 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-F5-6812                     TCGA-F5-6813 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-G5-6233                     TCGA-G5-6235 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-G5-6572                     TCGA-G5-6641 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
[1] "hr=" "1.1"
D26V2, continuous
                                vv
clus                             STAGE I STAGE II STAGE IIA STAGE IIB STAGE IIC
  DEL PEAK  1(1P36.11) MUTATED        12        3        15         2         0
  DEL PEAK  1(1P36.11) WILD-TYPE      18        5        23         0         2
                                vv
clus                             STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  DEL PEAK  1(1P36.11) MUTATED           2          3         11          8
  DEL PEAK  1(1P36.11) WILD-TYPE         3          6         12          6
                                vv
clus                             STAGE IV STAGE IVA
  DEL PEAK  1(1P36.11) MUTATED          7         6
  DEL PEAK  1(1P36.11) WILD-TYPE       10         3
D26V3, multiclass
                                vv
clus                             T1 T2 T3 T4
  DEL PEAK  1(1P36.11) MUTATED    2 14 45 10
  DEL PEAK  1(1P36.11) WILD-TYPE  7 15 64  4
D26V4, multiclass
    clus
vv   DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  T1                            2                              7
  T2                           14                             15
  T3                           45                             64
  T4                           10                              4
                                vv
clus                             N0 N1 N2
  DEL PEAK  1(1P36.11) MUTATED   32 22 17
  DEL PEAK  1(1P36.11) WILD-TYPE 51 23 15
D26V5, multiclass
    clus
vv   DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  N0                           32                             51
  N1                           22                             23
  N2                           17                             15
                                vv
clus                             M0 M1 M1A MX
  DEL PEAK  1(1P36.11) MUTATED   52 11   2  5
  DEL PEAK  1(1P36.11) WILD-TYPE 71 11   0  8
D26V6, multiclass
     clus
vv    DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  M0                            52                             71
  M1                            11                             11
  M1A                            2                              0
  MX                             5                              8
D26V7, binary
                                cls
clus                              0  1
  DEL PEAK  1(1P36.11) MUTATED   32 40
  DEL PEAK  1(1P36.11) WILD-TYPE 42 48
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  1(1P36.11) MUTATED     32   40
  DEL PEAK  1(1P36.11) WILD-TYPE   42   48
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  FEMALE                           32                             42
  MALE                             40                             48
D26V8, binary
                                cls
clus                              0  1
  DEL PEAK  1(1P36.11) MUTATED   61  7
  DEL PEAK  1(1P36.11) WILD-TYPE 82  6
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  1(1P36.11) MUTATED     61    7
  DEL PEAK  1(1P36.11) WILD-TYPE   82    6
                                clus
vv                               DEL PEAK  1(1P36.11) MUTATED
  RECTAL ADENOCARCINOMA                                    61
  RECTAL MUCINOUS ADENOCARCINOMA                            7
                                clus
vv                               DEL PEAK  1(1P36.11) WILD-TYPE
  RECTAL ADENOCARCINOMA                                      82
  RECTAL MUCINOUS ADENOCARCINOMA                              6
D26V9, binary
                                cls
clus                              0  1
  DEL PEAK  1(1P36.11) MUTATED    3 69
  DEL PEAK  1(1P36.11) WILD-TYPE  3 87
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  1(1P36.11) MUTATED      3   69
  DEL PEAK  1(1P36.11) WILD-TYPE    3   87
     clus
vv    DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  NO                             3                              3
  YES                           69                             87
                                vv
clus                             R0 R1 R2 RX
  DEL PEAK  1(1P36.11) MUTATED   52  1  7  0
  DEL PEAK  1(1P36.11) WILD-TYPE 69  1  5  3
D26V10, multiclass
    clus
vv   DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  R0                           52                             69
  R1                            1                              1
  R2                            7                              5
  RX                            0                              3
D26V11, continuous

Clustering(27) Variable = DEL PEAK  2(1P33) MUTATION ANALYSIS
D27V1, survival
                             sevent
clus2                          0  1
  DEL PEAK  2(1P33) MUTATED   36  4
  DEL PEAK  2(1P33) WILD-TYPE 81  9
  DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE 
                         40                          90 
  DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE 
                          4                           9 
$`DEL PEAK  2(1P33) MUTATED`
TCGA-AF-2687 TCGA-AF-2690 TCGA-AF-2692 TCGA-AF-4110 TCGA-AF-6136 TCGA-AG-3582 
       24.13        17.23        13.55        14.50        15.35         1.02 
TCGA-AG-3731 TCGA-AG-3896 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-A00H TCGA-AG-A00Y 
        1.02         1.02         1.02         1.02        25.94        23.01 
TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A032 TCGA-AH-6544 
       12.00        70.03         1.94        38.93        38.01         0.49 
TCGA-AH-6643 TCGA-BM-6198 TCGA-CI-6623 TCGA-CI-6624 TCGA-CL-4957 TCGA-DC-4745 
        0.69        10.19         9.37         4.70        13.97        10.98 
TCGA-DC-4749 TCGA-DC-5869 TCGA-DC-6155 TCGA-DC-6157 TCGA-DC-6160 TCGA-DY-A0XA 
       11.01        12.99        14.01        36.00        30.05       126.41 
TCGA-DY-A1DE TCGA-EF-5830 TCGA-EI-6506 TCGA-EI-6511 TCGA-EI-6885 TCGA-EI-7002 
      129.27         0.49        20.55        15.85        13.61        11.97 
TCGA-F5-6702 TCGA-F5-6811 TCGA-F5-6813 TCGA-G5-6572 
        2.17         1.02         0.69        47.08 

$`DEL PEAK  2(1P33) WILD-TYPE`
TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2693 TCGA-AF-3400 TCGA-AF-3911 TCGA-AF-3913 
       17.95        10.62        19.10        12.72        25.02        10.39 
TCGA-AF-5654 TCGA-AF-6655 TCGA-AF-6672 TCGA-AG-3575 TCGA-AG-3581 TCGA-AG-3583 
        8.45        11.67        10.39        12.00         1.02         2.01 
TCGA-AG-3586 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3605 TCGA-AG-3726 TCGA-AG-3727 
        1.02         1.02         0.99         0.99         7.96         0.95 
TCGA-AG-3742 TCGA-AG-3878 TCGA-AG-3883 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 
        0.99         0.99         1.02         0.92         1.02         0.99 
TCGA-AG-3894 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-4022 TCGA-AG-A002 TCGA-AG-A008 
        0.99         1.02         1.02         0.99        20.94        13.91 
TCGA-AG-A00C TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01J 
        6.02        17.03        15.91        13.02         1.02         1.02 
TCGA-AG-A01N TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A023 TCGA-AG-A025 TCGA-AG-A02N 
       12.00        63.98        10.98        51.98        49.94        61.94 
TCGA-AG-A02X TCGA-AH-6547 TCGA-AH-6644 TCGA-AH-6897 TCGA-AH-6903 TCGA-CI-6619 
       40.96         1.45         0.72         4.60         1.81         6.02 
TCGA-CI-6620 TCGA-CI-6622 TCGA-CL-5917 TCGA-CL-5918 TCGA-DC-5337 TCGA-DC-6154 
        6.02         6.94        60.00         7.99        15.02        12.00 
TCGA-DC-6156 TCGA-DC-6158 TCGA-DC-6681 TCGA-DC-6682 TCGA-DC-6683 TCGA-DT-5265 
       15.02         6.97        12.95        13.02        10.06         5.29 
TCGA-DY-A1DC TCGA-DY-A1DD TCGA-DY-A1DF TCGA-DY-A1DG TCGA-DY-A1H8 TCGA-EF-5831 
       41.33        57.24        24.13        51.48        32.58         2.40 
TCGA-EI-6507 TCGA-EI-6508 TCGA-EI-6509 TCGA-EI-6510 TCGA-EI-6512 TCGA-EI-6513 
       19.96        20.91        17.00        18.28        17.69        16.34 
TCGA-EI-6514 TCGA-EI-6881 TCGA-EI-6882 TCGA-EI-6883 TCGA-EI-6884 TCGA-EI-6917 
       16.31        16.37         8.61        11.51        10.78        17.46 
TCGA-EI-7004 TCGA-F5-6465 TCGA-F5-6571 TCGA-F5-6810 TCGA-F5-6812 TCGA-F5-6814 
        8.45         3.39         0.85         0.39         0.66         0.53 
TCGA-F5-6861 TCGA-F5-6863 TCGA-F5-6864 TCGA-G5-6233 TCGA-G5-6235 TCGA-G5-6641 
        1.08         0.76         0.46        18.25        55.76        26.43 

  DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE 
                       0.49                        0.39 
  DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE 
                     129.27                       63.98 
  DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE 
                      13.27                       10.39 
[1] "0.5 - 129.3 (13.3)" "0.4 - 64.0 (10.4)" 
                 TCGA-AF-2687                  TCGA-AF-2689 
  "DEL PEAK  2(1P33) MUTATED" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AF-2690                  TCGA-AF-2691 
  "DEL PEAK  2(1P33) MUTATED" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AF-2692                  TCGA-AF-2693 
  "DEL PEAK  2(1P33) MUTATED" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AF-3400                  TCGA-AF-3911 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AF-3913                  TCGA-AF-4110 
"DEL PEAK  2(1P33) WILD-TYPE"   "DEL PEAK  2(1P33) MUTATED" 
                 TCGA-AF-5654                  TCGA-AF-6136 
"DEL PEAK  2(1P33) WILD-TYPE"   "DEL PEAK  2(1P33) MUTATED" 
                 TCGA-AF-6655                  TCGA-AF-6672 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-3575                  TCGA-AG-3581 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-3582                  TCGA-AG-3583 
  "DEL PEAK  2(1P33) MUTATED" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-3586                  TCGA-AG-3587 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-3599                  TCGA-AG-3605 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-3726                  TCGA-AG-3727 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-3731                  TCGA-AG-3742 
  "DEL PEAK  2(1P33) MUTATED" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-3878                  TCGA-AG-3883 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-3887                  TCGA-AG-3892 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-3893                  TCGA-AG-3894 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-3896                  TCGA-AG-3999 
  "DEL PEAK  2(1P33) MUTATED"   "DEL PEAK  2(1P33) MUTATED" 
                 TCGA-AG-4001                  TCGA-AG-4007 
  "DEL PEAK  2(1P33) MUTATED" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-4008                  TCGA-AG-4022 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-A002                  TCGA-AG-A008 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-A00C                  TCGA-AG-A00H 
"DEL PEAK  2(1P33) WILD-TYPE"   "DEL PEAK  2(1P33) MUTATED" 
                 TCGA-AG-A00Y                  TCGA-AG-A011 
  "DEL PEAK  2(1P33) MUTATED" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-A014                  TCGA-AG-A015 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-A016                  TCGA-AG-A01J 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-A01L                  TCGA-AG-A01N 
  "DEL PEAK  2(1P33) MUTATED" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-A01W                  TCGA-AG-A01Y 
  "DEL PEAK  2(1P33) MUTATED" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-A020                  TCGA-AG-A023 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-A025                  TCGA-AG-A026 
"DEL PEAK  2(1P33) WILD-TYPE"   "DEL PEAK  2(1P33) MUTATED" 
                 TCGA-AG-A02G                  TCGA-AG-A02N 
  "DEL PEAK  2(1P33) MUTATED" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-A02X                  TCGA-AG-A032 
"DEL PEAK  2(1P33) WILD-TYPE"   "DEL PEAK  2(1P33) MUTATED" 
                 TCGA-AH-6544                  TCGA-AH-6547 
  "DEL PEAK  2(1P33) MUTATED" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AH-6643                  TCGA-AH-6644 
  "DEL PEAK  2(1P33) MUTATED" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AH-6897                  TCGA-AH-6903 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-BM-6198                  TCGA-CI-6619 
  "DEL PEAK  2(1P33) MUTATED" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-CI-6620                  TCGA-CI-6622 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-CI-6623                  TCGA-CI-6624 
  "DEL PEAK  2(1P33) MUTATED"   "DEL PEAK  2(1P33) MUTATED" 
                 TCGA-CL-4957                  TCGA-CL-5917 
  "DEL PEAK  2(1P33) MUTATED" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-CL-5918                  TCGA-DC-4745 
"DEL PEAK  2(1P33) WILD-TYPE"   "DEL PEAK  2(1P33) MUTATED" 
                 TCGA-DC-4749                  TCGA-DC-5337 
  "DEL PEAK  2(1P33) MUTATED" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-DC-5869                  TCGA-DC-6154 
  "DEL PEAK  2(1P33) MUTATED" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-DC-6155                  TCGA-DC-6156 
  "DEL PEAK  2(1P33) MUTATED" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-DC-6157                  TCGA-DC-6158 
  "DEL PEAK  2(1P33) MUTATED" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-DC-6160                  TCGA-DC-6681 
  "DEL PEAK  2(1P33) MUTATED" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-DC-6682                  TCGA-DC-6683 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-DT-5265                  TCGA-DY-A0XA 
"DEL PEAK  2(1P33) WILD-TYPE"   "DEL PEAK  2(1P33) MUTATED" 
                 TCGA-DY-A1DC                  TCGA-DY-A1DD 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-DY-A1DE                  TCGA-DY-A1DF 
  "DEL PEAK  2(1P33) MUTATED" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-DY-A1DG                  TCGA-DY-A1H8 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-EF-5830                  TCGA-EF-5831 
  "DEL PEAK  2(1P33) MUTATED" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-EI-6506                  TCGA-EI-6507 
  "DEL PEAK  2(1P33) MUTATED" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-EI-6508                  TCGA-EI-6509 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-EI-6510                  TCGA-EI-6511 
"DEL PEAK  2(1P33) WILD-TYPE"   "DEL PEAK  2(1P33) MUTATED" 
                 TCGA-EI-6512                  TCGA-EI-6513 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-EI-6514                  TCGA-EI-6881 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-EI-6882                  TCGA-EI-6883 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-EI-6884                  TCGA-EI-6885 
"DEL PEAK  2(1P33) WILD-TYPE"   "DEL PEAK  2(1P33) MUTATED" 
                 TCGA-EI-6917                  TCGA-EI-7002 
"DEL PEAK  2(1P33) WILD-TYPE"   "DEL PEAK  2(1P33) MUTATED" 
                 TCGA-EI-7004                  TCGA-F5-6465 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-F5-6571                  TCGA-F5-6702 
"DEL PEAK  2(1P33) WILD-TYPE"   "DEL PEAK  2(1P33) MUTATED" 
                 TCGA-F5-6810                  TCGA-F5-6811 
"DEL PEAK  2(1P33) WILD-TYPE"   "DEL PEAK  2(1P33) MUTATED" 
                 TCGA-F5-6812                  TCGA-F5-6813 
"DEL PEAK  2(1P33) WILD-TYPE"   "DEL PEAK  2(1P33) MUTATED" 
                 TCGA-F5-6814                  TCGA-F5-6861 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-F5-6863                  TCGA-F5-6864 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-G5-6233                  TCGA-G5-6235 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-G5-6572                  TCGA-G5-6641 
  "DEL PEAK  2(1P33) MUTATED" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AF-2687                  TCGA-AF-2689 
  "DEL PEAK  2(1P33) MUTATED" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AF-2690                  TCGA-AF-2691 
  "DEL PEAK  2(1P33) MUTATED" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AF-2692                  TCGA-AF-2693 
  "DEL PEAK  2(1P33) MUTATED" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AF-3400                  TCGA-AF-3911 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AF-3913                  TCGA-AF-4110 
"DEL PEAK  2(1P33) WILD-TYPE"   "DEL PEAK  2(1P33) MUTATED" 
                 TCGA-AF-5654                  TCGA-AF-6136 
"DEL PEAK  2(1P33) WILD-TYPE"   "DEL PEAK  2(1P33) MUTATED" 
                 TCGA-AF-6655                  TCGA-AF-6672 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-3575                  TCGA-AG-3581 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-3582                  TCGA-AG-3583 
  "DEL PEAK  2(1P33) MUTATED" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-3586                  TCGA-AG-3587 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-3599                  TCGA-AG-3605 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-3726                  TCGA-AG-3727 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-3731                  TCGA-AG-3742 
  "DEL PEAK  2(1P33) MUTATED" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-3878                  TCGA-AG-3883 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-3887                  TCGA-AG-3892 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-3893                  TCGA-AG-3894 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-3896                  TCGA-AG-3999 
  "DEL PEAK  2(1P33) MUTATED"   "DEL PEAK  2(1P33) MUTATED" 
                 TCGA-AG-4001                  TCGA-AG-4007 
  "DEL PEAK  2(1P33) MUTATED" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-4008                  TCGA-AG-4022 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-A002                  TCGA-AG-A008 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-A00C                  TCGA-AG-A00H 
"DEL PEAK  2(1P33) WILD-TYPE"   "DEL PEAK  2(1P33) MUTATED" 
                 TCGA-AG-A00Y                  TCGA-AG-A011 
  "DEL PEAK  2(1P33) MUTATED" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-A014                  TCGA-AG-A015 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-A016                  TCGA-AG-A01J 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-A01L                  TCGA-AG-A01N 
  "DEL PEAK  2(1P33) MUTATED" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-A01W                  TCGA-AG-A01Y 
  "DEL PEAK  2(1P33) MUTATED" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-A020                  TCGA-AG-A023 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-A025                  TCGA-AG-A026 
"DEL PEAK  2(1P33) WILD-TYPE"   "DEL PEAK  2(1P33) MUTATED" 
                 TCGA-AG-A02G                  TCGA-AG-A02N 
  "DEL PEAK  2(1P33) MUTATED" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-A02X                  TCGA-AG-A032 
"DEL PEAK  2(1P33) WILD-TYPE"   "DEL PEAK  2(1P33) MUTATED" 
                 TCGA-AH-6544                  TCGA-AH-6547 
  "DEL PEAK  2(1P33) MUTATED" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AH-6643                  TCGA-AH-6644 
  "DEL PEAK  2(1P33) MUTATED" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AH-6897                  TCGA-AH-6903 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-BM-6198                  TCGA-CI-6619 
  "DEL PEAK  2(1P33) MUTATED" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-CI-6620                  TCGA-CI-6622 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-CI-6623                  TCGA-CI-6624 
  "DEL PEAK  2(1P33) MUTATED"   "DEL PEAK  2(1P33) MUTATED" 
                 TCGA-CL-4957                  TCGA-CL-5917 
  "DEL PEAK  2(1P33) MUTATED" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-CL-5918                  TCGA-DC-4745 
"DEL PEAK  2(1P33) WILD-TYPE"   "DEL PEAK  2(1P33) MUTATED" 
                 TCGA-DC-4749                  TCGA-DC-5337 
  "DEL PEAK  2(1P33) MUTATED" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-DC-5869                  TCGA-DC-6154 
  "DEL PEAK  2(1P33) MUTATED" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-DC-6155                  TCGA-DC-6156 
  "DEL PEAK  2(1P33) MUTATED" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-DC-6157                  TCGA-DC-6158 
  "DEL PEAK  2(1P33) MUTATED" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-DC-6160                  TCGA-DC-6681 
  "DEL PEAK  2(1P33) MUTATED" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-DC-6682                  TCGA-DC-6683 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-DT-5265                  TCGA-DY-A0XA 
"DEL PEAK  2(1P33) WILD-TYPE"   "DEL PEAK  2(1P33) MUTATED" 
                 TCGA-DY-A1DC                  TCGA-DY-A1DD 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-DY-A1DE                  TCGA-DY-A1DF 
  "DEL PEAK  2(1P33) MUTATED" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-DY-A1DG                  TCGA-DY-A1H8 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-EF-5830                  TCGA-EF-5831 
  "DEL PEAK  2(1P33) MUTATED" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-EI-6506                  TCGA-EI-6507 
  "DEL PEAK  2(1P33) MUTATED" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-EI-6508                  TCGA-EI-6509 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-EI-6510                  TCGA-EI-6511 
"DEL PEAK  2(1P33) WILD-TYPE"   "DEL PEAK  2(1P33) MUTATED" 
                 TCGA-EI-6512                  TCGA-EI-6513 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-EI-6514                  TCGA-EI-6881 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-EI-6882                  TCGA-EI-6883 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-EI-6884                  TCGA-EI-6885 
"DEL PEAK  2(1P33) WILD-TYPE"   "DEL PEAK  2(1P33) MUTATED" 
                 TCGA-EI-6917                  TCGA-EI-7002 
"DEL PEAK  2(1P33) WILD-TYPE"   "DEL PEAK  2(1P33) MUTATED" 
                 TCGA-EI-7004                  TCGA-F5-6465 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-F5-6571                  TCGA-F5-6702 
"DEL PEAK  2(1P33) WILD-TYPE"   "DEL PEAK  2(1P33) MUTATED" 
                 TCGA-F5-6810                  TCGA-F5-6811 
"DEL PEAK  2(1P33) WILD-TYPE"   "DEL PEAK  2(1P33) MUTATED" 
                 TCGA-F5-6812                  TCGA-F5-6813 
"DEL PEAK  2(1P33) WILD-TYPE"   "DEL PEAK  2(1P33) MUTATED" 
                 TCGA-F5-6814                  TCGA-F5-6861 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-F5-6863                  TCGA-F5-6864 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-G5-6233                  TCGA-G5-6235 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-G5-6572                  TCGA-G5-6641 
  "DEL PEAK  2(1P33) MUTATED" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AF-2687                  TCGA-AF-2689 
  "DEL PEAK  2(1P33) MUTATED" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AF-2690                  TCGA-AF-2691 
  "DEL PEAK  2(1P33) MUTATED" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AF-2692                  TCGA-AF-2693 
  "DEL PEAK  2(1P33) MUTATED" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AF-3400                  TCGA-AF-3911 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AF-3913                  TCGA-AF-4110 
"DEL PEAK  2(1P33) WILD-TYPE"   "DEL PEAK  2(1P33) MUTATED" 
                 TCGA-AF-5654                  TCGA-AF-6136 
"DEL PEAK  2(1P33) WILD-TYPE"   "DEL PEAK  2(1P33) MUTATED" 
                 TCGA-AF-6655                  TCGA-AF-6672 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-3575                  TCGA-AG-3581 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-3582                  TCGA-AG-3583 
  "DEL PEAK  2(1P33) MUTATED" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-3586                  TCGA-AG-3587 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-3599                  TCGA-AG-3605 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-3726                  TCGA-AG-3727 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-3731                  TCGA-AG-3742 
  "DEL PEAK  2(1P33) MUTATED" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-3878                  TCGA-AG-3883 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-3887                  TCGA-AG-3892 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-3893                  TCGA-AG-3894 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-3896                  TCGA-AG-3999 
  "DEL PEAK  2(1P33) MUTATED"   "DEL PEAK  2(1P33) MUTATED" 
                 TCGA-AG-4001                  TCGA-AG-4007 
  "DEL PEAK  2(1P33) MUTATED" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-4008                  TCGA-AG-4022 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-A002                  TCGA-AG-A008 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-A00C                  TCGA-AG-A00H 
"DEL PEAK  2(1P33) WILD-TYPE"   "DEL PEAK  2(1P33) MUTATED" 
                 TCGA-AG-A00Y                  TCGA-AG-A011 
  "DEL PEAK  2(1P33) MUTATED" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-A014                  TCGA-AG-A015 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-A016                  TCGA-AG-A01J 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-A01L                  TCGA-AG-A01N 
  "DEL PEAK  2(1P33) MUTATED" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-A01W                  TCGA-AG-A01Y 
  "DEL PEAK  2(1P33) MUTATED" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-A020                  TCGA-AG-A023 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-A025                  TCGA-AG-A026 
"DEL PEAK  2(1P33) WILD-TYPE"   "DEL PEAK  2(1P33) MUTATED" 
                 TCGA-AG-A02G                  TCGA-AG-A02N 
  "DEL PEAK  2(1P33) MUTATED" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-A02X                  TCGA-AG-A032 
"DEL PEAK  2(1P33) WILD-TYPE"   "DEL PEAK  2(1P33) MUTATED" 
                 TCGA-AH-6544                  TCGA-AH-6547 
  "DEL PEAK  2(1P33) MUTATED" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AH-6643                  TCGA-AH-6644 
  "DEL PEAK  2(1P33) MUTATED" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AH-6897                  TCGA-AH-6903 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-BM-6198                  TCGA-CI-6619 
  "DEL PEAK  2(1P33) MUTATED" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-CI-6620                  TCGA-CI-6622 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-CI-6623                  TCGA-CI-6624 
  "DEL PEAK  2(1P33) MUTATED"   "DEL PEAK  2(1P33) MUTATED" 
                 TCGA-CL-4957                  TCGA-CL-5917 
  "DEL PEAK  2(1P33) MUTATED" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-CL-5918                  TCGA-DC-4745 
"DEL PEAK  2(1P33) WILD-TYPE"   "DEL PEAK  2(1P33) MUTATED" 
                 TCGA-DC-4749                  TCGA-DC-5337 
  "DEL PEAK  2(1P33) MUTATED" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-DC-5869                  TCGA-DC-6154 
  "DEL PEAK  2(1P33) MUTATED" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-DC-6155                  TCGA-DC-6156 
  "DEL PEAK  2(1P33) MUTATED" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-DC-6157                  TCGA-DC-6158 
  "DEL PEAK  2(1P33) MUTATED" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-DC-6160                  TCGA-DC-6681 
  "DEL PEAK  2(1P33) MUTATED" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-DC-6682                  TCGA-DC-6683 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-DT-5265                  TCGA-DY-A0XA 
"DEL PEAK  2(1P33) WILD-TYPE"   "DEL PEAK  2(1P33) MUTATED" 
                 TCGA-DY-A1DC                  TCGA-DY-A1DD 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-DY-A1DE                  TCGA-DY-A1DF 
  "DEL PEAK  2(1P33) MUTATED" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-DY-A1DG                  TCGA-DY-A1H8 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-EF-5830                  TCGA-EF-5831 
  "DEL PEAK  2(1P33) MUTATED" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-EI-6506                  TCGA-EI-6507 
  "DEL PEAK  2(1P33) MUTATED" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-EI-6508                  TCGA-EI-6509 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-EI-6510                  TCGA-EI-6511 
"DEL PEAK  2(1P33) WILD-TYPE"   "DEL PEAK  2(1P33) MUTATED" 
                 TCGA-EI-6512                  TCGA-EI-6513 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-EI-6514                  TCGA-EI-6881 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-EI-6882                  TCGA-EI-6883 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-EI-6884                  TCGA-EI-6885 
"DEL PEAK  2(1P33) WILD-TYPE"   "DEL PEAK  2(1P33) MUTATED" 
                 TCGA-EI-6917                  TCGA-EI-7002 
"DEL PEAK  2(1P33) WILD-TYPE"   "DEL PEAK  2(1P33) MUTATED" 
                 TCGA-EI-7004                  TCGA-F5-6465 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-F5-6571                  TCGA-F5-6702 
"DEL PEAK  2(1P33) WILD-TYPE"   "DEL PEAK  2(1P33) MUTATED" 
                 TCGA-F5-6810                  TCGA-F5-6811 
"DEL PEAK  2(1P33) WILD-TYPE"   "DEL PEAK  2(1P33) MUTATED" 
                 TCGA-F5-6812                  TCGA-F5-6813 
"DEL PEAK  2(1P33) WILD-TYPE"   "DEL PEAK  2(1P33) MUTATED" 
                 TCGA-F5-6814                  TCGA-F5-6861 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-F5-6863                  TCGA-F5-6864 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-G5-6233                  TCGA-G5-6235 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-G5-6572                  TCGA-G5-6641 
  "DEL PEAK  2(1P33) MUTATED" "DEL PEAK  2(1P33) WILD-TYPE" 
[1] "hr=" "1.2"
D27V2, continuous
                             vv
clus                          STAGE I STAGE II STAGE IIA STAGE IIB STAGE IIC
  DEL PEAK  2(1P33) MUTATED         7        2        13         1         0
  DEL PEAK  2(1P33) WILD-TYPE      23        6        25         1         2
                             vv
clus                          STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  DEL PEAK  2(1P33) MUTATED           1          2          9          5
  DEL PEAK  2(1P33) WILD-TYPE         4          7         14          9
                             vv
clus                          STAGE IV STAGE IVA
  DEL PEAK  2(1P33) MUTATED          6         2
  DEL PEAK  2(1P33) WILD-TYPE       11         7
D27V3, multiclass
                             vv
clus                          T1 T2 T3 T4
  DEL PEAK  2(1P33) MUTATED    1  8 36  4
  DEL PEAK  2(1P33) WILD-TYPE  8 21 73 10
D27V4, multiclass
    clus
vv   DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE
  T1                         1                           8
  T2                         8                          21
  T3                        36                          73
  T4                         4                          10
                             vv
clus                          N0 N1 N2
  DEL PEAK  2(1P33) MUTATED   23 18  8
  DEL PEAK  2(1P33) WILD-TYPE 60 27 24
D27V5, multiclass
    clus
vv   DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE
  N0                        23                          60
  N1                        18                          27
  N2                         8                          24
                             vv
clus                          M0 M1 M1A MX
  DEL PEAK  2(1P33) MUTATED   37  8   0  3
  DEL PEAK  2(1P33) WILD-TYPE 86 14   2 10
D27V6, multiclass
     clus
vv    DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE
  M0                         37                          86
  M1                          8                          14
  M1A                         0                           2
  MX                          3                          10
D27V7, binary
                             cls
clus                           0  1
  DEL PEAK  2(1P33) MUTATED   23 27
  DEL PEAK  2(1P33) WILD-TYPE 51 61
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  2(1P33) MUTATED     23   27
  DEL PEAK  2(1P33) WILD-TYPE   51   61
        clus
vv       DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE
  FEMALE                        23                          51
  MALE                          27                          61
D27V8, binary
                             cls
clus                           0  1
  DEL PEAK  2(1P33) MUTATED   46  1
  DEL PEAK  2(1P33) WILD-TYPE 97 12
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  2(1P33) MUTATED     46    1
  DEL PEAK  2(1P33) WILD-TYPE   97   12
                                clus
vv                               DEL PEAK  2(1P33) MUTATED
  RECTAL ADENOCARCINOMA                                 46
  RECTAL MUCINOUS ADENOCARCINOMA                         1
                                clus
vv                               DEL PEAK  2(1P33) WILD-TYPE
  RECTAL ADENOCARCINOMA                                   97
  RECTAL MUCINOUS ADENOCARCINOMA                          12
D27V9, binary
                             cls
clus                            0   1
  DEL PEAK  2(1P33) MUTATED     3  47
  DEL PEAK  2(1P33) WILD-TYPE   3 109
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  2(1P33) MUTATED      3   47
  DEL PEAK  2(1P33) WILD-TYPE    3  109
     clus
vv    DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE
  NO                          3                           3
  YES                        47                         109
                             vv
clus                          R0 R1 R2 RX
  DEL PEAK  2(1P33) MUTATED   34  1  4  0
  DEL PEAK  2(1P33) WILD-TYPE 87  1  8  3
D27V10, multiclass
    clus
vv   DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE
  R0                        34                          87
  R1                         1                           1
  R2                         4                           8
  RX                         0                           3
D27V11, continuous

Clustering(28) Variable = DEL PEAK  3(1P13.2) MUTATION ANALYSIS
D28V1, survival
                               sevent
clus2                            0  1
  DEL PEAK  3(1P13.2) MUTATED   37  5
  DEL PEAK  3(1P13.2) WILD-TYPE 80  8
  DEL PEAK  3(1P13.2) MUTATED DEL PEAK  3(1P13.2) WILD-TYPE 
                           42                            88 
  DEL PEAK  3(1P13.2) MUTATED DEL PEAK  3(1P13.2) WILD-TYPE 
                            5                             8 
$`DEL PEAK  3(1P13.2) MUTATED`
TCGA-AF-2687 TCGA-AF-2690 TCGA-AF-2692 TCGA-AF-4110 TCGA-AF-6136 TCGA-AG-3582 
       24.13        17.23        13.55        14.50        15.35         1.02 
TCGA-AG-3731 TCGA-AG-3896 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-A00H TCGA-AG-A00Y 
        1.02         1.02         1.02         1.02        25.94        23.01 
TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A026 TCGA-AG-A032 TCGA-AH-6544 TCGA-AH-6643 
       12.00        70.03         1.94        38.01         0.49         0.69 
TCGA-BM-6198 TCGA-CI-6623 TCGA-DC-4749 TCGA-DC-5869 TCGA-DC-6155 TCGA-DC-6157 
       10.19         9.37        11.01        12.99        14.01        36.00 
TCGA-DC-6160 TCGA-DY-A0XA TCGA-DY-A1DC TCGA-DY-A1DE TCGA-EF-5830 TCGA-EI-6506 
       30.05       126.41        41.33       129.27         0.49        20.55 
TCGA-EI-6509 TCGA-EI-6511 TCGA-EI-6883 TCGA-EI-6885 TCGA-EI-7002 TCGA-F5-6702 
       17.00        15.85        11.51        13.61        11.97         2.17 
TCGA-F5-6811 TCGA-F5-6812 TCGA-F5-6813 TCGA-F5-6863 TCGA-G5-6233 TCGA-G5-6572 
        1.02         0.66         0.69         0.76        18.25        47.08 

$`DEL PEAK  3(1P13.2) WILD-TYPE`
TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2693 TCGA-AF-3400 TCGA-AF-3911 TCGA-AF-3913 
       17.95        10.62        19.10        12.72        25.02        10.39 
TCGA-AF-5654 TCGA-AF-6655 TCGA-AF-6672 TCGA-AG-3575 TCGA-AG-3581 TCGA-AG-3583 
        8.45        11.67        10.39        12.00         1.02         2.01 
TCGA-AG-3586 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3605 TCGA-AG-3726 TCGA-AG-3727 
        1.02         1.02         0.99         0.99         7.96         0.95 
TCGA-AG-3742 TCGA-AG-3878 TCGA-AG-3883 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 
        0.99         0.99         1.02         0.92         1.02         0.99 
TCGA-AG-3894 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-4022 TCGA-AG-A002 TCGA-AG-A008 
        0.99         1.02         1.02         0.99        20.94        13.91 
TCGA-AG-A00C TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01J 
        6.02        17.03        15.91        13.02         1.02         1.02 
TCGA-AG-A01N TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A023 TCGA-AG-A025 TCGA-AG-A02G 
       12.00        63.98        10.98        51.98        49.94        38.93 
TCGA-AG-A02N TCGA-AG-A02X TCGA-AH-6547 TCGA-AH-6644 TCGA-AH-6897 TCGA-AH-6903 
       61.94        40.96         1.45         0.72         4.60         1.81 
TCGA-CI-6619 TCGA-CI-6620 TCGA-CI-6622 TCGA-CI-6624 TCGA-CL-4957 TCGA-CL-5917 
        6.02         6.02         6.94         4.70        13.97        60.00 
TCGA-CL-5918 TCGA-DC-4745 TCGA-DC-5337 TCGA-DC-6154 TCGA-DC-6156 TCGA-DC-6158 
        7.99        10.98        15.02        12.00        15.02         6.97 
TCGA-DC-6681 TCGA-DC-6682 TCGA-DC-6683 TCGA-DT-5265 TCGA-DY-A1DD TCGA-DY-A1DF 
       12.95        13.02        10.06         5.29        57.24        24.13 
TCGA-DY-A1DG TCGA-DY-A1H8 TCGA-EF-5831 TCGA-EI-6507 TCGA-EI-6508 TCGA-EI-6510 
       51.48        32.58         2.40        19.96        20.91        18.28 
TCGA-EI-6512 TCGA-EI-6513 TCGA-EI-6514 TCGA-EI-6881 TCGA-EI-6882 TCGA-EI-6884 
       17.69        16.34        16.31        16.37         8.61        10.78 
TCGA-EI-6917 TCGA-EI-7004 TCGA-F5-6465 TCGA-F5-6571 TCGA-F5-6810 TCGA-F5-6814 
       17.46         8.45         3.39         0.85         0.39         0.53 
TCGA-F5-6861 TCGA-F5-6864 TCGA-G5-6235 TCGA-G5-6641 
        1.08         0.46        55.76        26.43 

  DEL PEAK  3(1P13.2) MUTATED DEL PEAK  3(1P13.2) WILD-TYPE 
                         0.49                          0.39 
  DEL PEAK  3(1P13.2) MUTATED DEL PEAK  3(1P13.2) WILD-TYPE 
                       129.27                         63.98 
  DEL PEAK  3(1P13.2) MUTATED DEL PEAK  3(1P13.2) WILD-TYPE 
                        13.27                         10.39 
[1] "0.5 - 129.3 (13.3)" "0.4 - 64.0 (10.4)" 
                   TCGA-AF-2687                    TCGA-AF-2689 
  "DEL PEAK  3(1P13.2) MUTATED" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
  "DEL PEAK  3(1P13.2) MUTATED" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AF-2692                    TCGA-AF-2693 
  "DEL PEAK  3(1P13.2) MUTATED" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AF-3400                    TCGA-AF-3911 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AF-3913                    TCGA-AF-4110 
"DEL PEAK  3(1P13.2) WILD-TYPE"   "DEL PEAK  3(1P13.2) MUTATED" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"DEL PEAK  3(1P13.2) WILD-TYPE"   "DEL PEAK  3(1P13.2) MUTATED" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-3575                    TCGA-AG-3581 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-3582                    TCGA-AG-3583 
  "DEL PEAK  3(1P13.2) MUTATED" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-3586                    TCGA-AG-3587 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-3599                    TCGA-AG-3605 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-3726                    TCGA-AG-3727 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-3731                    TCGA-AG-3742 
  "DEL PEAK  3(1P13.2) MUTATED" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-3878                    TCGA-AG-3883 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-3896                    TCGA-AG-3999 
  "DEL PEAK  3(1P13.2) MUTATED"   "DEL PEAK  3(1P13.2) MUTATED" 
                   TCGA-AG-4001                    TCGA-AG-4007 
  "DEL PEAK  3(1P13.2) MUTATED" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-4008                    TCGA-AG-4022 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-A002                    TCGA-AG-A008 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-A00C                    TCGA-AG-A00H 
"DEL PEAK  3(1P13.2) WILD-TYPE"   "DEL PEAK  3(1P13.2) MUTATED" 
                   TCGA-AG-A00Y                    TCGA-AG-A011 
  "DEL PEAK  3(1P13.2) MUTATED" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-A014                    TCGA-AG-A015 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-A016                    TCGA-AG-A01J 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-A01L                    TCGA-AG-A01N 
  "DEL PEAK  3(1P13.2) MUTATED" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-A01W                    TCGA-AG-A01Y 
  "DEL PEAK  3(1P13.2) MUTATED" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-A020                    TCGA-AG-A023 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-A025                    TCGA-AG-A026 
"DEL PEAK  3(1P13.2) WILD-TYPE"   "DEL PEAK  3(1P13.2) MUTATED" 
                   TCGA-AG-A02G                    TCGA-AG-A02N 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-A02X                    TCGA-AG-A032 
"DEL PEAK  3(1P13.2) WILD-TYPE"   "DEL PEAK  3(1P13.2) MUTATED" 
                   TCGA-AH-6544                    TCGA-AH-6547 
  "DEL PEAK  3(1P13.2) MUTATED" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AH-6643                    TCGA-AH-6644 
  "DEL PEAK  3(1P13.2) MUTATED" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AH-6897                    TCGA-AH-6903 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-BM-6198                    TCGA-CI-6619 
  "DEL PEAK  3(1P13.2) MUTATED" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-CI-6620                    TCGA-CI-6622 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-CI-6623                    TCGA-CI-6624 
  "DEL PEAK  3(1P13.2) MUTATED" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-CL-4957                    TCGA-CL-5917 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-CL-5918                    TCGA-DC-4745 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-DC-4749                    TCGA-DC-5337 
  "DEL PEAK  3(1P13.2) MUTATED" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-DC-5869                    TCGA-DC-6154 
  "DEL PEAK  3(1P13.2) MUTATED" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-DC-6155                    TCGA-DC-6156 
  "DEL PEAK  3(1P13.2) MUTATED" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-DC-6157                    TCGA-DC-6158 
  "DEL PEAK  3(1P13.2) MUTATED" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-DC-6160                    TCGA-DC-6681 
  "DEL PEAK  3(1P13.2) MUTATED" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-DC-6682                    TCGA-DC-6683 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-DT-5265                    TCGA-DY-A0XA 
"DEL PEAK  3(1P13.2) WILD-TYPE"   "DEL PEAK  3(1P13.2) MUTATED" 
                   TCGA-DY-A1DC                    TCGA-DY-A1DD 
  "DEL PEAK  3(1P13.2) MUTATED" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-DY-A1DE                    TCGA-DY-A1DF 
  "DEL PEAK  3(1P13.2) MUTATED" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-DY-A1DG                    TCGA-DY-A1H8 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-EF-5830                    TCGA-EF-5831 
  "DEL PEAK  3(1P13.2) MUTATED" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-EI-6506                    TCGA-EI-6507 
  "DEL PEAK  3(1P13.2) MUTATED" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-EI-6508                    TCGA-EI-6509 
"DEL PEAK  3(1P13.2) WILD-TYPE"   "DEL PEAK  3(1P13.2) MUTATED" 
                   TCGA-EI-6510                    TCGA-EI-6511 
"DEL PEAK  3(1P13.2) WILD-TYPE"   "DEL PEAK  3(1P13.2) MUTATED" 
                   TCGA-EI-6512                    TCGA-EI-6513 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-EI-6514                    TCGA-EI-6881 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-EI-6882                    TCGA-EI-6883 
"DEL PEAK  3(1P13.2) WILD-TYPE"   "DEL PEAK  3(1P13.2) MUTATED" 
                   TCGA-EI-6884                    TCGA-EI-6885 
"DEL PEAK  3(1P13.2) WILD-TYPE"   "DEL PEAK  3(1P13.2) MUTATED" 
                   TCGA-EI-6917                    TCGA-EI-7002 
"DEL PEAK  3(1P13.2) WILD-TYPE"   "DEL PEAK  3(1P13.2) MUTATED" 
                   TCGA-EI-7004                    TCGA-F5-6465 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-F5-6571                    TCGA-F5-6702 
"DEL PEAK  3(1P13.2) WILD-TYPE"   "DEL PEAK  3(1P13.2) MUTATED" 
                   TCGA-F5-6810                    TCGA-F5-6811 
"DEL PEAK  3(1P13.2) WILD-TYPE"   "DEL PEAK  3(1P13.2) MUTATED" 
                   TCGA-F5-6812                    TCGA-F5-6813 
  "DEL PEAK  3(1P13.2) MUTATED"   "DEL PEAK  3(1P13.2) MUTATED" 
                   TCGA-F5-6814                    TCGA-F5-6861 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-F5-6863                    TCGA-F5-6864 
  "DEL PEAK  3(1P13.2) MUTATED" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-G5-6233                    TCGA-G5-6235 
  "DEL PEAK  3(1P13.2) MUTATED" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-G5-6572                    TCGA-G5-6641 
  "DEL PEAK  3(1P13.2) MUTATED" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AF-2687                    TCGA-AF-2689 
  "DEL PEAK  3(1P13.2) MUTATED" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
  "DEL PEAK  3(1P13.2) MUTATED" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AF-2692                    TCGA-AF-2693 
  "DEL PEAK  3(1P13.2) MUTATED" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AF-3400                    TCGA-AF-3911 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AF-3913                    TCGA-AF-4110 
"DEL PEAK  3(1P13.2) WILD-TYPE"   "DEL PEAK  3(1P13.2) MUTATED" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"DEL PEAK  3(1P13.2) WILD-TYPE"   "DEL PEAK  3(1P13.2) MUTATED" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-3575                    TCGA-AG-3581 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-3582                    TCGA-AG-3583 
  "DEL PEAK  3(1P13.2) MUTATED" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-3586                    TCGA-AG-3587 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-3599                    TCGA-AG-3605 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-3726                    TCGA-AG-3727 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-3731                    TCGA-AG-3742 
  "DEL PEAK  3(1P13.2) MUTATED" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-3878                    TCGA-AG-3883 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-3896                    TCGA-AG-3999 
  "DEL PEAK  3(1P13.2) MUTATED"   "DEL PEAK  3(1P13.2) MUTATED" 
                   TCGA-AG-4001                    TCGA-AG-4007 
  "DEL PEAK  3(1P13.2) MUTATED" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-4008                    TCGA-AG-4022 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-A002                    TCGA-AG-A008 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-A00C                    TCGA-AG-A00H 
"DEL PEAK  3(1P13.2) WILD-TYPE"   "DEL PEAK  3(1P13.2) MUTATED" 
                   TCGA-AG-A00Y                    TCGA-AG-A011 
  "DEL PEAK  3(1P13.2) MUTATED" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-A014                    TCGA-AG-A015 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-A016                    TCGA-AG-A01J 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-A01L                    TCGA-AG-A01N 
  "DEL PEAK  3(1P13.2) MUTATED" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-A01W                    TCGA-AG-A01Y 
  "DEL PEAK  3(1P13.2) MUTATED" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-A020                    TCGA-AG-A023 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-A025                    TCGA-AG-A026 
"DEL PEAK  3(1P13.2) WILD-TYPE"   "DEL PEAK  3(1P13.2) MUTATED" 
                   TCGA-AG-A02G                    TCGA-AG-A02N 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-A02X                    TCGA-AG-A032 
"DEL PEAK  3(1P13.2) WILD-TYPE"   "DEL PEAK  3(1P13.2) MUTATED" 
                   TCGA-AH-6544                    TCGA-AH-6547 
  "DEL PEAK  3(1P13.2) MUTATED" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AH-6643                    TCGA-AH-6644 
  "DEL PEAK  3(1P13.2) MUTATED" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AH-6897                    TCGA-AH-6903 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-BM-6198                    TCGA-CI-6619 
  "DEL PEAK  3(1P13.2) MUTATED" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-CI-6620                    TCGA-CI-6622 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-CI-6623                    TCGA-CI-6624 
  "DEL PEAK  3(1P13.2) MUTATED" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-CL-4957                    TCGA-CL-5917 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-CL-5918                    TCGA-DC-4745 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-DC-4749                    TCGA-DC-5337 
  "DEL PEAK  3(1P13.2) MUTATED" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-DC-5869                    TCGA-DC-6154 
  "DEL PEAK  3(1P13.2) MUTATED" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-DC-6155                    TCGA-DC-6156 
  "DEL PEAK  3(1P13.2) MUTATED" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-DC-6157                    TCGA-DC-6158 
  "DEL PEAK  3(1P13.2) MUTATED" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-DC-6160                    TCGA-DC-6681 
  "DEL PEAK  3(1P13.2) MUTATED" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-DC-6682                    TCGA-DC-6683 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-DT-5265                    TCGA-DY-A0XA 
"DEL PEAK  3(1P13.2) WILD-TYPE"   "DEL PEAK  3(1P13.2) MUTATED" 
                   TCGA-DY-A1DC                    TCGA-DY-A1DD 
  "DEL PEAK  3(1P13.2) MUTATED" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-DY-A1DE                    TCGA-DY-A1DF 
  "DEL PEAK  3(1P13.2) MUTATED" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-DY-A1DG                    TCGA-DY-A1H8 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-EF-5830                    TCGA-EF-5831 
  "DEL PEAK  3(1P13.2) MUTATED" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-EI-6506                    TCGA-EI-6507 
  "DEL PEAK  3(1P13.2) MUTATED" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-EI-6508                    TCGA-EI-6509 
"DEL PEAK  3(1P13.2) WILD-TYPE"   "DEL PEAK  3(1P13.2) MUTATED" 
                   TCGA-EI-6510                    TCGA-EI-6511 
"DEL PEAK  3(1P13.2) WILD-TYPE"   "DEL PEAK  3(1P13.2) MUTATED" 
                   TCGA-EI-6512                    TCGA-EI-6513 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-EI-6514                    TCGA-EI-6881 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-EI-6882                    TCGA-EI-6883 
"DEL PEAK  3(1P13.2) WILD-TYPE"   "DEL PEAK  3(1P13.2) MUTATED" 
                   TCGA-EI-6884                    TCGA-EI-6885 
"DEL PEAK  3(1P13.2) WILD-TYPE"   "DEL PEAK  3(1P13.2) MUTATED" 
                   TCGA-EI-6917                    TCGA-EI-7002 
"DEL PEAK  3(1P13.2) WILD-TYPE"   "DEL PEAK  3(1P13.2) MUTATED" 
                   TCGA-EI-7004                    TCGA-F5-6465 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-F5-6571                    TCGA-F5-6702 
"DEL PEAK  3(1P13.2) WILD-TYPE"   "DEL PEAK  3(1P13.2) MUTATED" 
                   TCGA-F5-6810                    TCGA-F5-6811 
"DEL PEAK  3(1P13.2) WILD-TYPE"   "DEL PEAK  3(1P13.2) MUTATED" 
                   TCGA-F5-6812                    TCGA-F5-6813 
  "DEL PEAK  3(1P13.2) MUTATED"   "DEL PEAK  3(1P13.2) MUTATED" 
                   TCGA-F5-6814                    TCGA-F5-6861 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-F5-6863                    TCGA-F5-6864 
  "DEL PEAK  3(1P13.2) MUTATED" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-G5-6233                    TCGA-G5-6235 
  "DEL PEAK  3(1P13.2) MUTATED" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-G5-6572                    TCGA-G5-6641 
  "DEL PEAK  3(1P13.2) MUTATED" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AF-2687                    TCGA-AF-2689 
  "DEL PEAK  3(1P13.2) MUTATED" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
  "DEL PEAK  3(1P13.2) MUTATED" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AF-2692                    TCGA-AF-2693 
  "DEL PEAK  3(1P13.2) MUTATED" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AF-3400                    TCGA-AF-3911 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AF-3913                    TCGA-AF-4110 
"DEL PEAK  3(1P13.2) WILD-TYPE"   "DEL PEAK  3(1P13.2) MUTATED" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"DEL PEAK  3(1P13.2) WILD-TYPE"   "DEL PEAK  3(1P13.2) MUTATED" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-3575                    TCGA-AG-3581 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-3582                    TCGA-AG-3583 
  "DEL PEAK  3(1P13.2) MUTATED" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-3586                    TCGA-AG-3587 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-3599                    TCGA-AG-3605 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-3726                    TCGA-AG-3727 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-3731                    TCGA-AG-3742 
  "DEL PEAK  3(1P13.2) MUTATED" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-3878                    TCGA-AG-3883 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-3896                    TCGA-AG-3999 
  "DEL PEAK  3(1P13.2) MUTATED"   "DEL PEAK  3(1P13.2) MUTATED" 
                   TCGA-AG-4001                    TCGA-AG-4007 
  "DEL PEAK  3(1P13.2) MUTATED" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-4008                    TCGA-AG-4022 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-A002                    TCGA-AG-A008 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-A00C                    TCGA-AG-A00H 
"DEL PEAK  3(1P13.2) WILD-TYPE"   "DEL PEAK  3(1P13.2) MUTATED" 
                   TCGA-AG-A00Y                    TCGA-AG-A011 
  "DEL PEAK  3(1P13.2) MUTATED" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-A014                    TCGA-AG-A015 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-A016                    TCGA-AG-A01J 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-A01L                    TCGA-AG-A01N 
  "DEL PEAK  3(1P13.2) MUTATED" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-A01W                    TCGA-AG-A01Y 
  "DEL PEAK  3(1P13.2) MUTATED" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-A020                    TCGA-AG-A023 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-A025                    TCGA-AG-A026 
"DEL PEAK  3(1P13.2) WILD-TYPE"   "DEL PEAK  3(1P13.2) MUTATED" 
                   TCGA-AG-A02G                    TCGA-AG-A02N 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-A02X                    TCGA-AG-A032 
"DEL PEAK  3(1P13.2) WILD-TYPE"   "DEL PEAK  3(1P13.2) MUTATED" 
                   TCGA-AH-6544                    TCGA-AH-6547 
  "DEL PEAK  3(1P13.2) MUTATED" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AH-6643                    TCGA-AH-6644 
  "DEL PEAK  3(1P13.2) MUTATED" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AH-6897                    TCGA-AH-6903 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-BM-6198                    TCGA-CI-6619 
  "DEL PEAK  3(1P13.2) MUTATED" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-CI-6620                    TCGA-CI-6622 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-CI-6623                    TCGA-CI-6624 
  "DEL PEAK  3(1P13.2) MUTATED" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-CL-4957                    TCGA-CL-5917 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-CL-5918                    TCGA-DC-4745 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-DC-4749                    TCGA-DC-5337 
  "DEL PEAK  3(1P13.2) MUTATED" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-DC-5869                    TCGA-DC-6154 
  "DEL PEAK  3(1P13.2) MUTATED" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-DC-6155                    TCGA-DC-6156 
  "DEL PEAK  3(1P13.2) MUTATED" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-DC-6157                    TCGA-DC-6158 
  "DEL PEAK  3(1P13.2) MUTATED" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-DC-6160                    TCGA-DC-6681 
  "DEL PEAK  3(1P13.2) MUTATED" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-DC-6682                    TCGA-DC-6683 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-DT-5265                    TCGA-DY-A0XA 
"DEL PEAK  3(1P13.2) WILD-TYPE"   "DEL PEAK  3(1P13.2) MUTATED" 
                   TCGA-DY-A1DC                    TCGA-DY-A1DD 
  "DEL PEAK  3(1P13.2) MUTATED" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-DY-A1DE                    TCGA-DY-A1DF 
  "DEL PEAK  3(1P13.2) MUTATED" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-DY-A1DG                    TCGA-DY-A1H8 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-EF-5830                    TCGA-EF-5831 
  "DEL PEAK  3(1P13.2) MUTATED" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-EI-6506                    TCGA-EI-6507 
  "DEL PEAK  3(1P13.2) MUTATED" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-EI-6508                    TCGA-EI-6509 
"DEL PEAK  3(1P13.2) WILD-TYPE"   "DEL PEAK  3(1P13.2) MUTATED" 
                   TCGA-EI-6510                    TCGA-EI-6511 
"DEL PEAK  3(1P13.2) WILD-TYPE"   "DEL PEAK  3(1P13.2) MUTATED" 
                   TCGA-EI-6512                    TCGA-EI-6513 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-EI-6514                    TCGA-EI-6881 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-EI-6882                    TCGA-EI-6883 
"DEL PEAK  3(1P13.2) WILD-TYPE"   "DEL PEAK  3(1P13.2) MUTATED" 
                   TCGA-EI-6884                    TCGA-EI-6885 
"DEL PEAK  3(1P13.2) WILD-TYPE"   "DEL PEAK  3(1P13.2) MUTATED" 
                   TCGA-EI-6917                    TCGA-EI-7002 
"DEL PEAK  3(1P13.2) WILD-TYPE"   "DEL PEAK  3(1P13.2) MUTATED" 
                   TCGA-EI-7004                    TCGA-F5-6465 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-F5-6571                    TCGA-F5-6702 
"DEL PEAK  3(1P13.2) WILD-TYPE"   "DEL PEAK  3(1P13.2) MUTATED" 
                   TCGA-F5-6810                    TCGA-F5-6811 
"DEL PEAK  3(1P13.2) WILD-TYPE"   "DEL PEAK  3(1P13.2) MUTATED" 
                   TCGA-F5-6812                    TCGA-F5-6813 
  "DEL PEAK  3(1P13.2) MUTATED"   "DEL PEAK  3(1P13.2) MUTATED" 
                   TCGA-F5-6814                    TCGA-F5-6861 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-F5-6863                    TCGA-F5-6864 
  "DEL PEAK  3(1P13.2) MUTATED" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-G5-6233                    TCGA-G5-6235 
  "DEL PEAK  3(1P13.2) MUTATED" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-G5-6572                    TCGA-G5-6641 
  "DEL PEAK  3(1P13.2) MUTATED" "DEL PEAK  3(1P13.2) WILD-TYPE" 
[1] "hr=" "1.1"
D28V2, continuous
                               vv
clus                            STAGE I STAGE II STAGE IIA STAGE IIB STAGE IIC
  DEL PEAK  3(1P13.2) MUTATED         6        2        15         1         2
  DEL PEAK  3(1P13.2) WILD-TYPE      24        6        23         1         0
                               vv
clus                            STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  DEL PEAK  3(1P13.2) MUTATED           0          1          9          6
  DEL PEAK  3(1P13.2) WILD-TYPE         5          8         14          8
                               vv
clus                            STAGE IV STAGE IVA
  DEL PEAK  3(1P13.2) MUTATED          6         2
  DEL PEAK  3(1P13.2) WILD-TYPE       11         7
D28V3, multiclass
                               vv
clus                            T1 T2 T3 T4
  DEL PEAK  3(1P13.2) MUTATED    1  6 39  5
  DEL PEAK  3(1P13.2) WILD-TYPE  8 23 70  9
D28V4, multiclass
    clus
vv   DEL PEAK  3(1P13.2) MUTATED DEL PEAK  3(1P13.2) WILD-TYPE
  T1                           1                             8
  T2                           6                            23
  T3                          39                            70
  T4                           5                             9
                               vv
clus                            N0 N1 N2
  DEL PEAK  3(1P13.2) MUTATED   25 15 11
  DEL PEAK  3(1P13.2) WILD-TYPE 58 30 21
D28V5, multiclass
    clus
vv   DEL PEAK  3(1P13.2) MUTATED DEL PEAK  3(1P13.2) WILD-TYPE
  N0                          25                            58
  N1                          15                            30
  N2                          11                            21
                               vv
clus                            M0 M1 M1A MX
  DEL PEAK  3(1P13.2) MUTATED   40  8   0  2
  DEL PEAK  3(1P13.2) WILD-TYPE 83 14   2 11
D28V6, multiclass
     clus
vv    DEL PEAK  3(1P13.2) MUTATED DEL PEAK  3(1P13.2) WILD-TYPE
  M0                           40                            83
  M1                            8                            14
  M1A                           0                             2
  MX                            2                            11
D28V7, binary
                               cls
clus                             0  1
  DEL PEAK  3(1P13.2) MUTATED   23 29
  DEL PEAK  3(1P13.2) WILD-TYPE 51 59
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  3(1P13.2) MUTATED     23   29
  DEL PEAK  3(1P13.2) WILD-TYPE   51   59
        clus
vv       DEL PEAK  3(1P13.2) MUTATED DEL PEAK  3(1P13.2) WILD-TYPE
  FEMALE                          23                            51
  MALE                            29                            59
D28V8, binary
                               cls
clus                             0  1
  DEL PEAK  3(1P13.2) MUTATED   47  2
  DEL PEAK  3(1P13.2) WILD-TYPE 96 11
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  3(1P13.2) MUTATED     47    2
  DEL PEAK  3(1P13.2) WILD-TYPE   96   11
                                clus
vv                               DEL PEAK  3(1P13.2) MUTATED
  RECTAL ADENOCARCINOMA                                   47
  RECTAL MUCINOUS ADENOCARCINOMA                           2
                                clus
vv                               DEL PEAK  3(1P13.2) WILD-TYPE
  RECTAL ADENOCARCINOMA                                     96
  RECTAL MUCINOUS ADENOCARCINOMA                            11
D28V9, binary
                               cls
clus                              0   1
  DEL PEAK  3(1P13.2) MUTATED     3  49
  DEL PEAK  3(1P13.2) WILD-TYPE   3 107
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  3(1P13.2) MUTATED      3   49
  DEL PEAK  3(1P13.2) WILD-TYPE    3  107
     clus
vv    DEL PEAK  3(1P13.2) MUTATED DEL PEAK  3(1P13.2) WILD-TYPE
  NO                            3                             3
  YES                          49                           107
                               vv
clus                            R0 R1 R2 RX
  DEL PEAK  3(1P13.2) MUTATED   38  1  4  0
  DEL PEAK  3(1P13.2) WILD-TYPE 83  1  8  3
D28V10, multiclass
    clus
vv   DEL PEAK  3(1P13.2) MUTATED DEL PEAK  3(1P13.2) WILD-TYPE
  R0                          38                            83
  R1                           1                             1
  R2                           4                             8
  RX                           0                             3
D28V11, continuous

Clustering(29) Variable = DEL PEAK  4(2P12) MUTATION ANALYSIS
D29V1, survival
                             sevent
clus2                           0   1
  DEL PEAK  4(2P12) MUTATED    12   0
  DEL PEAK  4(2P12) WILD-TYPE 105  13
  DEL PEAK  4(2P12) MUTATED DEL PEAK  4(2P12) WILD-TYPE 
                         12                         118 
  DEL PEAK  4(2P12) MUTATED DEL PEAK  4(2P12) WILD-TYPE 
                          0                          13 
$`DEL PEAK  4(2P12) MUTATED`
TCGA-AF-6136 TCGA-AG-3582 TCGA-AG-3896 TCGA-AG-3999 TCGA-AG-4008 TCGA-AG-A00H 
       15.35         1.02         1.02         1.02         1.02        25.94 
TCGA-AG-A02X TCGA-DC-6156 TCGA-DC-6682 TCGA-EF-5831 TCGA-EI-6508 TCGA-F5-6571 
       40.96        15.02        13.02         2.40        20.91         0.85 

$`DEL PEAK  4(2P12) WILD-TYPE`
TCGA-AF-2687 TCGA-AF-2689 TCGA-AF-2690 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-2693 
       24.13        17.95        17.23        10.62        13.55        19.10 
TCGA-AF-3400 TCGA-AF-3911 TCGA-AF-3913 TCGA-AF-4110 TCGA-AF-5654 TCGA-AF-6655 
       12.72        25.02        10.39        14.50         8.45        11.67 
TCGA-AF-6672 TCGA-AG-3575 TCGA-AG-3581 TCGA-AG-3583 TCGA-AG-3586 TCGA-AG-3587 
       10.39        12.00         1.02         2.01         1.02         1.02 
TCGA-AG-3599 TCGA-AG-3605 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3731 TCGA-AG-3742 
        0.99         0.99         7.96         0.95         1.02         0.99 
TCGA-AG-3878 TCGA-AG-3883 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 
        0.99         1.02         0.92         1.02         0.99         0.99 
TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4022 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C 
        1.02         1.02         0.99        20.94        13.91         6.02 
TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01J 
       23.01        17.03        15.91        13.02         1.02         1.02 
TCGA-AG-A01L TCGA-AG-A01N TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A023 
       12.00        12.00        70.03        63.98        10.98        51.98 
TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A032 TCGA-AH-6544 
       49.94         1.94        38.93        61.94        38.01         0.49 
TCGA-AH-6547 TCGA-AH-6643 TCGA-AH-6644 TCGA-AH-6897 TCGA-AH-6903 TCGA-BM-6198 
        1.45         0.69         0.72         4.60         1.81        10.19 
TCGA-CI-6619 TCGA-CI-6620 TCGA-CI-6622 TCGA-CI-6623 TCGA-CI-6624 TCGA-CL-4957 
        6.02         6.02         6.94         9.37         4.70        13.97 
TCGA-CL-5917 TCGA-CL-5918 TCGA-DC-4745 TCGA-DC-4749 TCGA-DC-5337 TCGA-DC-5869 
       60.00         7.99        10.98        11.01        15.02        12.99 
TCGA-DC-6154 TCGA-DC-6155 TCGA-DC-6157 TCGA-DC-6158 TCGA-DC-6160 TCGA-DC-6681 
       12.00        14.01        36.00         6.97        30.05        12.95 
TCGA-DC-6683 TCGA-DT-5265 TCGA-DY-A0XA TCGA-DY-A1DC TCGA-DY-A1DD TCGA-DY-A1DE 
       10.06         5.29       126.41        41.33        57.24       129.27 
TCGA-DY-A1DF TCGA-DY-A1DG TCGA-DY-A1H8 TCGA-EF-5830 TCGA-EI-6506 TCGA-EI-6507 
       24.13        51.48        32.58         0.49        20.55        19.96 
TCGA-EI-6509 TCGA-EI-6510 TCGA-EI-6511 TCGA-EI-6512 TCGA-EI-6513 TCGA-EI-6514 
       17.00        18.28        15.85        17.69        16.34        16.31 
TCGA-EI-6881 TCGA-EI-6882 TCGA-EI-6883 TCGA-EI-6884 TCGA-EI-6885 TCGA-EI-6917 
       16.37         8.61        11.51        10.78        13.61        17.46 
TCGA-EI-7002 TCGA-EI-7004 TCGA-F5-6465 TCGA-F5-6702 TCGA-F5-6810 TCGA-F5-6811 
       11.97         8.45         3.39         2.17         0.39         1.02 
TCGA-F5-6812 TCGA-F5-6813 TCGA-F5-6814 TCGA-F5-6861 TCGA-F5-6863 TCGA-F5-6864 
        0.66         0.69         0.53         1.08         0.76         0.46 
TCGA-G5-6233 TCGA-G5-6235 TCGA-G5-6572 TCGA-G5-6641 
       18.25        55.76        47.08        26.43 

  DEL PEAK  4(2P12) MUTATED DEL PEAK  4(2P12) WILD-TYPE 
                       0.85                        0.39 
  DEL PEAK  4(2P12) MUTATED DEL PEAK  4(2P12) WILD-TYPE 
                      40.96                      129.27 
  DEL PEAK  4(2P12) MUTATED DEL PEAK  4(2P12) WILD-TYPE 
                      7.710                      10.995 
[1] "0.8 - 41.0 (7.7)"   "0.4 - 129.3 (11.0)"
                 TCGA-AF-2687                  TCGA-AF-2689 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AF-2690                  TCGA-AF-2691 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AF-2692                  TCGA-AF-2693 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AF-3400                  TCGA-AF-3911 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AF-3913                  TCGA-AF-4110 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AF-5654                  TCGA-AF-6136 
"DEL PEAK  4(2P12) WILD-TYPE"   "DEL PEAK  4(2P12) MUTATED" 
                 TCGA-AF-6655                  TCGA-AF-6672 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-3575                  TCGA-AG-3581 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-3582                  TCGA-AG-3583 
  "DEL PEAK  4(2P12) MUTATED" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-3586                  TCGA-AG-3587 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-3599                  TCGA-AG-3605 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-3726                  TCGA-AG-3727 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-3731                  TCGA-AG-3742 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-3878                  TCGA-AG-3883 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-3887                  TCGA-AG-3892 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-3893                  TCGA-AG-3894 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-3896                  TCGA-AG-3999 
  "DEL PEAK  4(2P12) MUTATED"   "DEL PEAK  4(2P12) MUTATED" 
                 TCGA-AG-4001                  TCGA-AG-4007 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-4008                  TCGA-AG-4022 
  "DEL PEAK  4(2P12) MUTATED" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-A002                  TCGA-AG-A008 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-A00C                  TCGA-AG-A00H 
"DEL PEAK  4(2P12) WILD-TYPE"   "DEL PEAK  4(2P12) MUTATED" 
                 TCGA-AG-A00Y                  TCGA-AG-A011 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-A014                  TCGA-AG-A015 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-A016                  TCGA-AG-A01J 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-A01L                  TCGA-AG-A01N 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-A01W                  TCGA-AG-A01Y 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-A020                  TCGA-AG-A023 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-A025                  TCGA-AG-A026 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-A02G                  TCGA-AG-A02N 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-A02X                  TCGA-AG-A032 
  "DEL PEAK  4(2P12) MUTATED" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AH-6544                  TCGA-AH-6547 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AH-6643                  TCGA-AH-6644 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AH-6897                  TCGA-AH-6903 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-BM-6198                  TCGA-CI-6619 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-CI-6620                  TCGA-CI-6622 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-CI-6623                  TCGA-CI-6624 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-CL-4957                  TCGA-CL-5917 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-CL-5918                  TCGA-DC-4745 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-DC-4749                  TCGA-DC-5337 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-DC-5869                  TCGA-DC-6154 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-DC-6155                  TCGA-DC-6156 
"DEL PEAK  4(2P12) WILD-TYPE"   "DEL PEAK  4(2P12) MUTATED" 
                 TCGA-DC-6157                  TCGA-DC-6158 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-DC-6160                  TCGA-DC-6681 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-DC-6682                  TCGA-DC-6683 
  "DEL PEAK  4(2P12) MUTATED" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-DT-5265                  TCGA-DY-A0XA 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-DY-A1DC                  TCGA-DY-A1DD 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-DY-A1DE                  TCGA-DY-A1DF 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-DY-A1DG                  TCGA-DY-A1H8 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-EF-5830                  TCGA-EF-5831 
"DEL PEAK  4(2P12) WILD-TYPE"   "DEL PEAK  4(2P12) MUTATED" 
                 TCGA-EI-6506                  TCGA-EI-6507 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-EI-6508                  TCGA-EI-6509 
  "DEL PEAK  4(2P12) MUTATED" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-EI-6510                  TCGA-EI-6511 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-EI-6512                  TCGA-EI-6513 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-EI-6514                  TCGA-EI-6881 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-EI-6882                  TCGA-EI-6883 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-EI-6884                  TCGA-EI-6885 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-EI-6917                  TCGA-EI-7002 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-EI-7004                  TCGA-F5-6465 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-F5-6571                  TCGA-F5-6702 
  "DEL PEAK  4(2P12) MUTATED" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-F5-6810                  TCGA-F5-6811 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-F5-6812                  TCGA-F5-6813 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-F5-6814                  TCGA-F5-6861 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-F5-6863                  TCGA-F5-6864 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-G5-6233                  TCGA-G5-6235 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-G5-6572                  TCGA-G5-6641 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AF-2687                  TCGA-AF-2689 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AF-2690                  TCGA-AF-2691 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AF-2692                  TCGA-AF-2693 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AF-3400                  TCGA-AF-3911 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AF-3913                  TCGA-AF-4110 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AF-5654                  TCGA-AF-6136 
"DEL PEAK  4(2P12) WILD-TYPE"   "DEL PEAK  4(2P12) MUTATED" 
                 TCGA-AF-6655                  TCGA-AF-6672 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-3575                  TCGA-AG-3581 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-3582                  TCGA-AG-3583 
  "DEL PEAK  4(2P12) MUTATED" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-3586                  TCGA-AG-3587 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-3599                  TCGA-AG-3605 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-3726                  TCGA-AG-3727 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-3731                  TCGA-AG-3742 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-3878                  TCGA-AG-3883 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-3887                  TCGA-AG-3892 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-3893                  TCGA-AG-3894 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-3896                  TCGA-AG-3999 
  "DEL PEAK  4(2P12) MUTATED"   "DEL PEAK  4(2P12) MUTATED" 
                 TCGA-AG-4001                  TCGA-AG-4007 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-4008                  TCGA-AG-4022 
  "DEL PEAK  4(2P12) MUTATED" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-A002                  TCGA-AG-A008 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-A00C                  TCGA-AG-A00H 
"DEL PEAK  4(2P12) WILD-TYPE"   "DEL PEAK  4(2P12) MUTATED" 
                 TCGA-AG-A00Y                  TCGA-AG-A011 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-A014                  TCGA-AG-A015 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-A016                  TCGA-AG-A01J 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-A01L                  TCGA-AG-A01N 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-A01W                  TCGA-AG-A01Y 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-A020                  TCGA-AG-A023 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-A025                  TCGA-AG-A026 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-A02G                  TCGA-AG-A02N 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-A02X                  TCGA-AG-A032 
  "DEL PEAK  4(2P12) MUTATED" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AH-6544                  TCGA-AH-6547 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AH-6643                  TCGA-AH-6644 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AH-6897                  TCGA-AH-6903 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-BM-6198                  TCGA-CI-6619 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-CI-6620                  TCGA-CI-6622 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-CI-6623                  TCGA-CI-6624 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-CL-4957                  TCGA-CL-5917 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-CL-5918                  TCGA-DC-4745 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-DC-4749                  TCGA-DC-5337 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-DC-5869                  TCGA-DC-6154 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-DC-6155                  TCGA-DC-6156 
"DEL PEAK  4(2P12) WILD-TYPE"   "DEL PEAK  4(2P12) MUTATED" 
                 TCGA-DC-6157                  TCGA-DC-6158 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-DC-6160                  TCGA-DC-6681 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-DC-6682                  TCGA-DC-6683 
  "DEL PEAK  4(2P12) MUTATED" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-DT-5265                  TCGA-DY-A0XA 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-DY-A1DC                  TCGA-DY-A1DD 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-DY-A1DE                  TCGA-DY-A1DF 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-DY-A1DG                  TCGA-DY-A1H8 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-EF-5830                  TCGA-EF-5831 
"DEL PEAK  4(2P12) WILD-TYPE"   "DEL PEAK  4(2P12) MUTATED" 
                 TCGA-EI-6506                  TCGA-EI-6507 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-EI-6508                  TCGA-EI-6509 
  "DEL PEAK  4(2P12) MUTATED" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-EI-6510                  TCGA-EI-6511 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-EI-6512                  TCGA-EI-6513 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-EI-6514                  TCGA-EI-6881 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-EI-6882                  TCGA-EI-6883 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-EI-6884                  TCGA-EI-6885 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-EI-6917                  TCGA-EI-7002 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-EI-7004                  TCGA-F5-6465 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-F5-6571                  TCGA-F5-6702 
  "DEL PEAK  4(2P12) MUTATED" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-F5-6810                  TCGA-F5-6811 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-F5-6812                  TCGA-F5-6813 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-F5-6814                  TCGA-F5-6861 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-F5-6863                  TCGA-F5-6864 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-G5-6233                  TCGA-G5-6235 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-G5-6572                  TCGA-G5-6641 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AF-2687                  TCGA-AF-2689 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AF-2690                  TCGA-AF-2691 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AF-2692                  TCGA-AF-2693 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AF-3400                  TCGA-AF-3911 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AF-3913                  TCGA-AF-4110 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AF-5654                  TCGA-AF-6136 
"DEL PEAK  4(2P12) WILD-TYPE"   "DEL PEAK  4(2P12) MUTATED" 
                 TCGA-AF-6655                  TCGA-AF-6672 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-3575                  TCGA-AG-3581 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-3582                  TCGA-AG-3583 
  "DEL PEAK  4(2P12) MUTATED" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-3586                  TCGA-AG-3587 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-3599                  TCGA-AG-3605 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-3726                  TCGA-AG-3727 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-3731                  TCGA-AG-3742 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-3878                  TCGA-AG-3883 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-3887                  TCGA-AG-3892 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-3893                  TCGA-AG-3894 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-3896                  TCGA-AG-3999 
  "DEL PEAK  4(2P12) MUTATED"   "DEL PEAK  4(2P12) MUTATED" 
                 TCGA-AG-4001                  TCGA-AG-4007 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-4008                  TCGA-AG-4022 
  "DEL PEAK  4(2P12) MUTATED" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-A002                  TCGA-AG-A008 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-A00C                  TCGA-AG-A00H 
"DEL PEAK  4(2P12) WILD-TYPE"   "DEL PEAK  4(2P12) MUTATED" 
                 TCGA-AG-A00Y                  TCGA-AG-A011 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-A014                  TCGA-AG-A015 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-A016                  TCGA-AG-A01J 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-A01L                  TCGA-AG-A01N 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-A01W                  TCGA-AG-A01Y 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-A020                  TCGA-AG-A023 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-A025                  TCGA-AG-A026 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-A02G                  TCGA-AG-A02N 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-A02X                  TCGA-AG-A032 
  "DEL PEAK  4(2P12) MUTATED" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AH-6544                  TCGA-AH-6547 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AH-6643                  TCGA-AH-6644 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AH-6897                  TCGA-AH-6903 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-BM-6198                  TCGA-CI-6619 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-CI-6620                  TCGA-CI-6622 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-CI-6623                  TCGA-CI-6624 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-CL-4957                  TCGA-CL-5917 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-CL-5918                  TCGA-DC-4745 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-DC-4749                  TCGA-DC-5337 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-DC-5869                  TCGA-DC-6154 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-DC-6155                  TCGA-DC-6156 
"DEL PEAK  4(2P12) WILD-TYPE"   "DEL PEAK  4(2P12) MUTATED" 
                 TCGA-DC-6157                  TCGA-DC-6158 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-DC-6160                  TCGA-DC-6681 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-DC-6682                  TCGA-DC-6683 
  "DEL PEAK  4(2P12) MUTATED" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-DT-5265                  TCGA-DY-A0XA 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-DY-A1DC                  TCGA-DY-A1DD 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-DY-A1DE                  TCGA-DY-A1DF 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-DY-A1DG                  TCGA-DY-A1H8 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-EF-5830                  TCGA-EF-5831 
"DEL PEAK  4(2P12) WILD-TYPE"   "DEL PEAK  4(2P12) MUTATED" 
                 TCGA-EI-6506                  TCGA-EI-6507 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-EI-6508                  TCGA-EI-6509 
  "DEL PEAK  4(2P12) MUTATED" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-EI-6510                  TCGA-EI-6511 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-EI-6512                  TCGA-EI-6513 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-EI-6514                  TCGA-EI-6881 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-EI-6882                  TCGA-EI-6883 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-EI-6884                  TCGA-EI-6885 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-EI-6917                  TCGA-EI-7002 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-EI-7004                  TCGA-F5-6465 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-F5-6571                  TCGA-F5-6702 
  "DEL PEAK  4(2P12) MUTATED" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-F5-6810                  TCGA-F5-6811 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-F5-6812                  TCGA-F5-6813 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-F5-6814                  TCGA-F5-6861 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-F5-6863                  TCGA-F5-6864 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-G5-6233                  TCGA-G5-6235 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-G5-6572                  TCGA-G5-6641 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
[1] "hr="     "7.5e+07"
D29V2, continuous
                             vv
clus                          STAGE I STAGE II STAGE IIA STAGE IIB STAGE IIC
  DEL PEAK  4(2P12) MUTATED         2        0         9         0         0
  DEL PEAK  4(2P12) WILD-TYPE      28        8        29         2         2
                             vv
clus                          STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  DEL PEAK  4(2P12) MUTATED           0          0          2          3
  DEL PEAK  4(2P12) WILD-TYPE         5          9         21         11
                             vv
clus                          STAGE IV STAGE IVA
  DEL PEAK  4(2P12) MUTATED          1         1
  DEL PEAK  4(2P12) WILD-TYPE       16         8
D29V3, multiclass
                             vv
clus                          T1 T2 T3 T4
  DEL PEAK  4(2P12) MUTATED    0  2 15  1
  DEL PEAK  4(2P12) WILD-TYPE  9 27 94 13
D29V4, multiclass
    clus
vv   DEL PEAK  4(2P12) MUTATED DEL PEAK  4(2P12) WILD-TYPE
  T1                         0                           9
  T2                         2                          27
  T3                        15                          94
  T4                         1                          13
                             vv
clus                          N0 N1 N2
  DEL PEAK  4(2P12) MUTATED   11  3  4
  DEL PEAK  4(2P12) WILD-TYPE 72 42 28
D29V5, multiclass
    clus
vv   DEL PEAK  4(2P12) MUTATED DEL PEAK  4(2P12) WILD-TYPE
  N0                        11                          72
  N1                         3                          42
  N2                         4                          28
                             vv
clus                           M0  M1 M1A  MX
  DEL PEAK  4(2P12) MUTATED    15   1   1   1
  DEL PEAK  4(2P12) WILD-TYPE 108  21   1  12
D29V6, multiclass
     clus
vv    DEL PEAK  4(2P12) MUTATED DEL PEAK  4(2P12) WILD-TYPE
  M0                         15                         108
  M1                          1                          21
  M1A                         1                           1
  MX                          1                          12
D29V7, binary
                             cls
clus                           0  1
  DEL PEAK  4(2P12) MUTATED    8 10
  DEL PEAK  4(2P12) WILD-TYPE 66 78
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  4(2P12) MUTATED      8   10
  DEL PEAK  4(2P12) WILD-TYPE   66   78
        clus
vv       DEL PEAK  4(2P12) MUTATED DEL PEAK  4(2P12) WILD-TYPE
  FEMALE                         8                          66
  MALE                          10                          78
D29V8, binary
                             cls
clus                            0   1
  DEL PEAK  4(2P12) MUTATED    16   1
  DEL PEAK  4(2P12) WILD-TYPE 127  12
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  4(2P12) MUTATED     16    1
  DEL PEAK  4(2P12) WILD-TYPE  127   12
                                clus
vv                               DEL PEAK  4(2P12) MUTATED
  RECTAL ADENOCARCINOMA                                 16
  RECTAL MUCINOUS ADENOCARCINOMA                         1
                                clus
vv                               DEL PEAK  4(2P12) WILD-TYPE
  RECTAL ADENOCARCINOMA                                  127
  RECTAL MUCINOUS ADENOCARCINOMA                          12
D29V9, binary
                             cls
clus                            0   1
  DEL PEAK  4(2P12) MUTATED     1  17
  DEL PEAK  4(2P12) WILD-TYPE   5 139
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  4(2P12) MUTATED      1   17
  DEL PEAK  4(2P12) WILD-TYPE    5  139
     clus
vv    DEL PEAK  4(2P12) MUTATED DEL PEAK  4(2P12) WILD-TYPE
  NO                          1                           5
  YES                        17                         139
                             vv
clus                           R0  R1  R2  RX
  DEL PEAK  4(2P12) MUTATED    15   0   1   0
  DEL PEAK  4(2P12) WILD-TYPE 106   2  11   3
D29V10, multiclass
    clus
vv   DEL PEAK  4(2P12) MUTATED DEL PEAK  4(2P12) WILD-TYPE
  R0                        15                         106
  R1                         0                           2
  R2                         1                          11
  RX                         0                           3
D29V11, continuous

Clustering(30) Variable = DEL PEAK  5(3P14.2) MUTATION ANALYSIS
D30V1, survival
                               sevent
clus2                            0  1
  DEL PEAK  5(3P14.2) MUTATED   19  3
  DEL PEAK  5(3P14.2) WILD-TYPE 98 10
  DEL PEAK  5(3P14.2) MUTATED DEL PEAK  5(3P14.2) WILD-TYPE 
                           22                           108 
  DEL PEAK  5(3P14.2) MUTATED DEL PEAK  5(3P14.2) WILD-TYPE 
                            3                            10 
$`DEL PEAK  5(3P14.2) MUTATED`
TCGA-AF-2691 TCGA-AF-2693 TCGA-AF-3400 TCGA-AF-4110 TCGA-AG-3581 TCGA-AG-3583 
       10.62        19.10        12.72        14.50         1.02         2.01 
TCGA-AG-3731 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A00C TCGA-AG-A02G TCGA-AH-6544 
        1.02         1.02         1.02         6.02        38.93         0.49 
TCGA-BM-6198 TCGA-CI-6619 TCGA-CI-6623 TCGA-DC-5337 TCGA-DC-6158 TCGA-DC-6682 
       10.19         6.02         9.37        15.02         6.97        13.02 
TCGA-DT-5265 TCGA-EI-6508 TCGA-F5-6810 TCGA-G5-6233 
        5.29        20.91         0.39        18.25 

$`DEL PEAK  5(3P14.2) WILD-TYPE`
TCGA-AF-2687 TCGA-AF-2689 TCGA-AF-2690 TCGA-AF-2692 TCGA-AF-3911 TCGA-AF-3913 
       24.13        17.95        17.23        13.55        25.02        10.39 
TCGA-AF-5654 TCGA-AF-6136 TCGA-AF-6655 TCGA-AF-6672 TCGA-AG-3575 TCGA-AG-3582 
        8.45        15.35        11.67        10.39        12.00         1.02 
TCGA-AG-3586 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3605 TCGA-AG-3726 TCGA-AG-3727 
        1.02         1.02         0.99         0.99         7.96         0.95 
TCGA-AG-3742 TCGA-AG-3878 TCGA-AG-3883 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 
        0.99         0.99         1.02         0.92         1.02         0.99 
TCGA-AG-3894 TCGA-AG-3896 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4022 TCGA-AG-A002 
        0.99         1.02         1.02         1.02         0.99        20.94 
TCGA-AG-A008 TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 
       13.91        25.94        23.01        17.03        15.91        13.02 
TCGA-AG-A016 TCGA-AG-A01J TCGA-AG-A01L TCGA-AG-A01N TCGA-AG-A01W TCGA-AG-A01Y 
        1.02         1.02        12.00        12.00        70.03        63.98 
TCGA-AG-A020 TCGA-AG-A023 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02N TCGA-AG-A02X 
       10.98        51.98        49.94         1.94        61.94        40.96 
TCGA-AG-A032 TCGA-AH-6547 TCGA-AH-6643 TCGA-AH-6644 TCGA-AH-6897 TCGA-AH-6903 
       38.01         1.45         0.69         0.72         4.60         1.81 
TCGA-CI-6620 TCGA-CI-6622 TCGA-CI-6624 TCGA-CL-4957 TCGA-CL-5917 TCGA-CL-5918 
        6.02         6.94         4.70        13.97        60.00         7.99 
TCGA-DC-4745 TCGA-DC-4749 TCGA-DC-5869 TCGA-DC-6154 TCGA-DC-6155 TCGA-DC-6156 
       10.98        11.01        12.99        12.00        14.01        15.02 
TCGA-DC-6157 TCGA-DC-6160 TCGA-DC-6681 TCGA-DC-6683 TCGA-DY-A0XA TCGA-DY-A1DC 
       36.00        30.05        12.95        10.06       126.41        41.33 
TCGA-DY-A1DD TCGA-DY-A1DE TCGA-DY-A1DF TCGA-DY-A1DG TCGA-DY-A1H8 TCGA-EF-5830 
       57.24       129.27        24.13        51.48        32.58         0.49 
TCGA-EF-5831 TCGA-EI-6506 TCGA-EI-6507 TCGA-EI-6509 TCGA-EI-6510 TCGA-EI-6511 
        2.40        20.55        19.96        17.00        18.28        15.85 
TCGA-EI-6512 TCGA-EI-6513 TCGA-EI-6514 TCGA-EI-6881 TCGA-EI-6882 TCGA-EI-6883 
       17.69        16.34        16.31        16.37         8.61        11.51 
TCGA-EI-6884 TCGA-EI-6885 TCGA-EI-6917 TCGA-EI-7002 TCGA-EI-7004 TCGA-F5-6465 
       10.78        13.61        17.46        11.97         8.45         3.39 
TCGA-F5-6571 TCGA-F5-6702 TCGA-F5-6811 TCGA-F5-6812 TCGA-F5-6813 TCGA-F5-6814 
        0.85         2.17         1.02         0.66         0.69         0.53 
TCGA-F5-6861 TCGA-F5-6863 TCGA-F5-6864 TCGA-G5-6235 TCGA-G5-6572 TCGA-G5-6641 
        1.08         0.76         0.46        55.76        47.08        26.43 

  DEL PEAK  5(3P14.2) MUTATED DEL PEAK  5(3P14.2) WILD-TYPE 
                         0.39                          0.46 
  DEL PEAK  5(3P14.2) MUTATED DEL PEAK  5(3P14.2) WILD-TYPE 
                        38.93                        129.27 
  DEL PEAK  5(3P14.2) MUTATED DEL PEAK  5(3P14.2) WILD-TYPE 
                         8.17                         11.82 
[1] "0.4 - 38.9 (8.2)"   "0.5 - 129.3 (11.8)"
                   TCGA-AF-2687                    TCGA-AF-2689 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
"DEL PEAK  5(3P14.2) WILD-TYPE"   "DEL PEAK  5(3P14.2) MUTATED" 
                   TCGA-AF-2692                    TCGA-AF-2693 
"DEL PEAK  5(3P14.2) WILD-TYPE"   "DEL PEAK  5(3P14.2) MUTATED" 
                   TCGA-AF-3400                    TCGA-AF-3911 
  "DEL PEAK  5(3P14.2) MUTATED" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AF-3913                    TCGA-AF-4110 
"DEL PEAK  5(3P14.2) WILD-TYPE"   "DEL PEAK  5(3P14.2) MUTATED" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-3575                    TCGA-AG-3581 
"DEL PEAK  5(3P14.2) WILD-TYPE"   "DEL PEAK  5(3P14.2) MUTATED" 
                   TCGA-AG-3582                    TCGA-AG-3583 
"DEL PEAK  5(3P14.2) WILD-TYPE"   "DEL PEAK  5(3P14.2) MUTATED" 
                   TCGA-AG-3586                    TCGA-AG-3587 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-3599                    TCGA-AG-3605 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-3726                    TCGA-AG-3727 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-3731                    TCGA-AG-3742 
  "DEL PEAK  5(3P14.2) MUTATED" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-3878                    TCGA-AG-3883 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-3896                    TCGA-AG-3999 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-4001                    TCGA-AG-4007 
"DEL PEAK  5(3P14.2) WILD-TYPE"   "DEL PEAK  5(3P14.2) MUTATED" 
                   TCGA-AG-4008                    TCGA-AG-4022 
  "DEL PEAK  5(3P14.2) MUTATED" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-A002                    TCGA-AG-A008 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-A00C                    TCGA-AG-A00H 
  "DEL PEAK  5(3P14.2) MUTATED" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-A00Y                    TCGA-AG-A011 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-A014                    TCGA-AG-A015 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-A016                    TCGA-AG-A01J 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-A01L                    TCGA-AG-A01N 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-A01W                    TCGA-AG-A01Y 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-A020                    TCGA-AG-A023 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-A025                    TCGA-AG-A026 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-A02G                    TCGA-AG-A02N 
  "DEL PEAK  5(3P14.2) MUTATED" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-A02X                    TCGA-AG-A032 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AH-6544                    TCGA-AH-6547 
  "DEL PEAK  5(3P14.2) MUTATED" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AH-6643                    TCGA-AH-6644 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AH-6897                    TCGA-AH-6903 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-BM-6198                    TCGA-CI-6619 
  "DEL PEAK  5(3P14.2) MUTATED"   "DEL PEAK  5(3P14.2) MUTATED" 
                   TCGA-CI-6620                    TCGA-CI-6622 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-CI-6623                    TCGA-CI-6624 
  "DEL PEAK  5(3P14.2) MUTATED" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-CL-4957                    TCGA-CL-5917 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-CL-5918                    TCGA-DC-4745 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-DC-4749                    TCGA-DC-5337 
"DEL PEAK  5(3P14.2) WILD-TYPE"   "DEL PEAK  5(3P14.2) MUTATED" 
                   TCGA-DC-5869                    TCGA-DC-6154 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-DC-6155                    TCGA-DC-6156 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-DC-6157                    TCGA-DC-6158 
"DEL PEAK  5(3P14.2) WILD-TYPE"   "DEL PEAK  5(3P14.2) MUTATED" 
                   TCGA-DC-6160                    TCGA-DC-6681 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-DC-6682                    TCGA-DC-6683 
  "DEL PEAK  5(3P14.2) MUTATED" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-DT-5265                    TCGA-DY-A0XA 
  "DEL PEAK  5(3P14.2) MUTATED" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-DY-A1DC                    TCGA-DY-A1DD 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-DY-A1DE                    TCGA-DY-A1DF 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-DY-A1DG                    TCGA-DY-A1H8 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-EF-5830                    TCGA-EF-5831 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-EI-6506                    TCGA-EI-6507 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-EI-6508                    TCGA-EI-6509 
  "DEL PEAK  5(3P14.2) MUTATED" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-EI-6510                    TCGA-EI-6511 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-EI-6512                    TCGA-EI-6513 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-EI-6514                    TCGA-EI-6881 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-EI-6882                    TCGA-EI-6883 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-EI-6884                    TCGA-EI-6885 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-EI-6917                    TCGA-EI-7002 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-EI-7004                    TCGA-F5-6465 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-F5-6571                    TCGA-F5-6702 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-F5-6810                    TCGA-F5-6811 
  "DEL PEAK  5(3P14.2) MUTATED" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-F5-6812                    TCGA-F5-6813 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-F5-6814                    TCGA-F5-6861 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-F5-6863                    TCGA-F5-6864 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-G5-6233                    TCGA-G5-6235 
  "DEL PEAK  5(3P14.2) MUTATED" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-G5-6572                    TCGA-G5-6641 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AF-2687                    TCGA-AF-2689 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
"DEL PEAK  5(3P14.2) WILD-TYPE"   "DEL PEAK  5(3P14.2) MUTATED" 
                   TCGA-AF-2692                    TCGA-AF-2693 
"DEL PEAK  5(3P14.2) WILD-TYPE"   "DEL PEAK  5(3P14.2) MUTATED" 
                   TCGA-AF-3400                    TCGA-AF-3911 
  "DEL PEAK  5(3P14.2) MUTATED" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AF-3913                    TCGA-AF-4110 
"DEL PEAK  5(3P14.2) WILD-TYPE"   "DEL PEAK  5(3P14.2) MUTATED" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-3575                    TCGA-AG-3581 
"DEL PEAK  5(3P14.2) WILD-TYPE"   "DEL PEAK  5(3P14.2) MUTATED" 
                   TCGA-AG-3582                    TCGA-AG-3583 
"DEL PEAK  5(3P14.2) WILD-TYPE"   "DEL PEAK  5(3P14.2) MUTATED" 
                   TCGA-AG-3586                    TCGA-AG-3587 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-3599                    TCGA-AG-3605 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-3726                    TCGA-AG-3727 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-3731                    TCGA-AG-3742 
  "DEL PEAK  5(3P14.2) MUTATED" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-3878                    TCGA-AG-3883 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-3896                    TCGA-AG-3999 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-4001                    TCGA-AG-4007 
"DEL PEAK  5(3P14.2) WILD-TYPE"   "DEL PEAK  5(3P14.2) MUTATED" 
                   TCGA-AG-4008                    TCGA-AG-4022 
  "DEL PEAK  5(3P14.2) MUTATED" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-A002                    TCGA-AG-A008 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-A00C                    TCGA-AG-A00H 
  "DEL PEAK  5(3P14.2) MUTATED" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-A00Y                    TCGA-AG-A011 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-A014                    TCGA-AG-A015 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-A016                    TCGA-AG-A01J 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-A01L                    TCGA-AG-A01N 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-A01W                    TCGA-AG-A01Y 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-A020                    TCGA-AG-A023 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-A025                    TCGA-AG-A026 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-A02G                    TCGA-AG-A02N 
  "DEL PEAK  5(3P14.2) MUTATED" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-A02X                    TCGA-AG-A032 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AH-6544                    TCGA-AH-6547 
  "DEL PEAK  5(3P14.2) MUTATED" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AH-6643                    TCGA-AH-6644 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AH-6897                    TCGA-AH-6903 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-BM-6198                    TCGA-CI-6619 
  "DEL PEAK  5(3P14.2) MUTATED"   "DEL PEAK  5(3P14.2) MUTATED" 
                   TCGA-CI-6620                    TCGA-CI-6622 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-CI-6623                    TCGA-CI-6624 
  "DEL PEAK  5(3P14.2) MUTATED" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-CL-4957                    TCGA-CL-5917 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-CL-5918                    TCGA-DC-4745 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-DC-4749                    TCGA-DC-5337 
"DEL PEAK  5(3P14.2) WILD-TYPE"   "DEL PEAK  5(3P14.2) MUTATED" 
                   TCGA-DC-5869                    TCGA-DC-6154 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-DC-6155                    TCGA-DC-6156 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-DC-6157                    TCGA-DC-6158 
"DEL PEAK  5(3P14.2) WILD-TYPE"   "DEL PEAK  5(3P14.2) MUTATED" 
                   TCGA-DC-6160                    TCGA-DC-6681 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-DC-6682                    TCGA-DC-6683 
  "DEL PEAK  5(3P14.2) MUTATED" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-DT-5265                    TCGA-DY-A0XA 
  "DEL PEAK  5(3P14.2) MUTATED" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-DY-A1DC                    TCGA-DY-A1DD 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-DY-A1DE                    TCGA-DY-A1DF 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-DY-A1DG                    TCGA-DY-A1H8 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-EF-5830                    TCGA-EF-5831 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-EI-6506                    TCGA-EI-6507 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-EI-6508                    TCGA-EI-6509 
  "DEL PEAK  5(3P14.2) MUTATED" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-EI-6510                    TCGA-EI-6511 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-EI-6512                    TCGA-EI-6513 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-EI-6514                    TCGA-EI-6881 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-EI-6882                    TCGA-EI-6883 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-EI-6884                    TCGA-EI-6885 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-EI-6917                    TCGA-EI-7002 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-EI-7004                    TCGA-F5-6465 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-F5-6571                    TCGA-F5-6702 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-F5-6810                    TCGA-F5-6811 
  "DEL PEAK  5(3P14.2) MUTATED" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-F5-6812                    TCGA-F5-6813 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-F5-6814                    TCGA-F5-6861 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-F5-6863                    TCGA-F5-6864 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-G5-6233                    TCGA-G5-6235 
  "DEL PEAK  5(3P14.2) MUTATED" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-G5-6572                    TCGA-G5-6641 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AF-2687                    TCGA-AF-2689 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
"DEL PEAK  5(3P14.2) WILD-TYPE"   "DEL PEAK  5(3P14.2) MUTATED" 
                   TCGA-AF-2692                    TCGA-AF-2693 
"DEL PEAK  5(3P14.2) WILD-TYPE"   "DEL PEAK  5(3P14.2) MUTATED" 
                   TCGA-AF-3400                    TCGA-AF-3911 
  "DEL PEAK  5(3P14.2) MUTATED" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AF-3913                    TCGA-AF-4110 
"DEL PEAK  5(3P14.2) WILD-TYPE"   "DEL PEAK  5(3P14.2) MUTATED" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-3575                    TCGA-AG-3581 
"DEL PEAK  5(3P14.2) WILD-TYPE"   "DEL PEAK  5(3P14.2) MUTATED" 
                   TCGA-AG-3582                    TCGA-AG-3583 
"DEL PEAK  5(3P14.2) WILD-TYPE"   "DEL PEAK  5(3P14.2) MUTATED" 
                   TCGA-AG-3586                    TCGA-AG-3587 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-3599                    TCGA-AG-3605 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-3726                    TCGA-AG-3727 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-3731                    TCGA-AG-3742 
  "DEL PEAK  5(3P14.2) MUTATED" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-3878                    TCGA-AG-3883 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-3896                    TCGA-AG-3999 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-4001                    TCGA-AG-4007 
"DEL PEAK  5(3P14.2) WILD-TYPE"   "DEL PEAK  5(3P14.2) MUTATED" 
                   TCGA-AG-4008                    TCGA-AG-4022 
  "DEL PEAK  5(3P14.2) MUTATED" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-A002                    TCGA-AG-A008 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-A00C                    TCGA-AG-A00H 
  "DEL PEAK  5(3P14.2) MUTATED" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-A00Y                    TCGA-AG-A011 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-A014                    TCGA-AG-A015 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-A016                    TCGA-AG-A01J 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-A01L                    TCGA-AG-A01N 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-A01W                    TCGA-AG-A01Y 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-A020                    TCGA-AG-A023 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-A025                    TCGA-AG-A026 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-A02G                    TCGA-AG-A02N 
  "DEL PEAK  5(3P14.2) MUTATED" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-A02X                    TCGA-AG-A032 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AH-6544                    TCGA-AH-6547 
  "DEL PEAK  5(3P14.2) MUTATED" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AH-6643                    TCGA-AH-6644 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AH-6897                    TCGA-AH-6903 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-BM-6198                    TCGA-CI-6619 
  "DEL PEAK  5(3P14.2) MUTATED"   "DEL PEAK  5(3P14.2) MUTATED" 
                   TCGA-CI-6620                    TCGA-CI-6622 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-CI-6623                    TCGA-CI-6624 
  "DEL PEAK  5(3P14.2) MUTATED" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-CL-4957                    TCGA-CL-5917 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-CL-5918                    TCGA-DC-4745 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-DC-4749                    TCGA-DC-5337 
"DEL PEAK  5(3P14.2) WILD-TYPE"   "DEL PEAK  5(3P14.2) MUTATED" 
                   TCGA-DC-5869                    TCGA-DC-6154 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-DC-6155                    TCGA-DC-6156 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-DC-6157                    TCGA-DC-6158 
"DEL PEAK  5(3P14.2) WILD-TYPE"   "DEL PEAK  5(3P14.2) MUTATED" 
                   TCGA-DC-6160                    TCGA-DC-6681 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-DC-6682                    TCGA-DC-6683 
  "DEL PEAK  5(3P14.2) MUTATED" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-DT-5265                    TCGA-DY-A0XA 
  "DEL PEAK  5(3P14.2) MUTATED" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-DY-A1DC                    TCGA-DY-A1DD 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-DY-A1DE                    TCGA-DY-A1DF 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-DY-A1DG                    TCGA-DY-A1H8 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-EF-5830                    TCGA-EF-5831 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-EI-6506                    TCGA-EI-6507 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-EI-6508                    TCGA-EI-6509 
  "DEL PEAK  5(3P14.2) MUTATED" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-EI-6510                    TCGA-EI-6511 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-EI-6512                    TCGA-EI-6513 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-EI-6514                    TCGA-EI-6881 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-EI-6882                    TCGA-EI-6883 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-EI-6884                    TCGA-EI-6885 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-EI-6917                    TCGA-EI-7002 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-EI-7004                    TCGA-F5-6465 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-F5-6571                    TCGA-F5-6702 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-F5-6810                    TCGA-F5-6811 
  "DEL PEAK  5(3P14.2) MUTATED" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-F5-6812                    TCGA-F5-6813 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-F5-6814                    TCGA-F5-6861 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-F5-6863                    TCGA-F5-6864 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-G5-6233                    TCGA-G5-6235 
  "DEL PEAK  5(3P14.2) MUTATED" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-G5-6572                    TCGA-G5-6641 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
[1] "hr=" "5.4"
D30V2, continuous
                               vv
clus                            STAGE I STAGE II STAGE IIA STAGE IIB STAGE IIC
  DEL PEAK  5(3P14.2) MUTATED         9        1         6         0         1
  DEL PEAK  5(3P14.2) WILD-TYPE      21        7        32         2         1
                               vv
clus                            STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  DEL PEAK  5(3P14.2) MUTATED           0          0          4          0
  DEL PEAK  5(3P14.2) WILD-TYPE         5          9         19         14
                               vv
clus                            STAGE IV STAGE IVA
  DEL PEAK  5(3P14.2) MUTATED          6         1
  DEL PEAK  5(3P14.2) WILD-TYPE       11         8
D30V3, multiclass
                               vv
clus                            T1 T2 T3 T4
  DEL PEAK  5(3P14.2) MUTATED    4  6 17  2
  DEL PEAK  5(3P14.2) WILD-TYPE  5 23 92 12
D30V4, multiclass
    clus
vv   DEL PEAK  5(3P14.2) MUTATED DEL PEAK  5(3P14.2) WILD-TYPE
  T1                           4                             5
  T2                           6                            23
  T3                          17                            92
  T4                           2                            12
                               vv
clus                            N0 N1 N2
  DEL PEAK  5(3P14.2) MUTATED   16  8  5
  DEL PEAK  5(3P14.2) WILD-TYPE 67 37 27
D30V5, multiclass
    clus
vv   DEL PEAK  5(3P14.2) MUTATED DEL PEAK  5(3P14.2) WILD-TYPE
  N0                          16                            67
  N1                           8                            37
  N2                           5                            27
                               vv
clus                             M0  M1 M1A  MX
  DEL PEAK  5(3P14.2) MUTATED    19   7   0   2
  DEL PEAK  5(3P14.2) WILD-TYPE 104  15   2  11
D30V6, multiclass
     clus
vv    DEL PEAK  5(3P14.2) MUTATED DEL PEAK  5(3P14.2) WILD-TYPE
  M0                           19                           104
  M1                            7                            15
  M1A                           0                             2
  MX                            2                            11
D30V7, binary
                               cls
clus                             0  1
  DEL PEAK  5(3P14.2) MUTATED    7 22
  DEL PEAK  5(3P14.2) WILD-TYPE 67 66
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  5(3P14.2) MUTATED      7   22
  DEL PEAK  5(3P14.2) WILD-TYPE   67   66
        clus
vv       DEL PEAK  5(3P14.2) MUTATED DEL PEAK  5(3P14.2) WILD-TYPE
  FEMALE                           7                            67
  MALE                            22                            66
D30V8, binary
                               cls
clus                              0   1
  DEL PEAK  5(3P14.2) MUTATED    23   3
  DEL PEAK  5(3P14.2) WILD-TYPE 120  10
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  5(3P14.2) MUTATED     23    3
  DEL PEAK  5(3P14.2) WILD-TYPE  120   10
                                clus
vv                               DEL PEAK  5(3P14.2) MUTATED
  RECTAL ADENOCARCINOMA                                   23
  RECTAL MUCINOUS ADENOCARCINOMA                           3
                                clus
vv                               DEL PEAK  5(3P14.2) WILD-TYPE
  RECTAL ADENOCARCINOMA                                    120
  RECTAL MUCINOUS ADENOCARCINOMA                            10
D30V9, binary
                               cls
clus                              0   1
  DEL PEAK  5(3P14.2) MUTATED     2  27
  DEL PEAK  5(3P14.2) WILD-TYPE   4 129
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  5(3P14.2) MUTATED      2   27
  DEL PEAK  5(3P14.2) WILD-TYPE    4  129
     clus
vv    DEL PEAK  5(3P14.2) MUTATED DEL PEAK  5(3P14.2) WILD-TYPE
  NO                            2                             4
  YES                          27                           129
                               vv
clus                             R0  R1  R2  RX
  DEL PEAK  5(3P14.2) MUTATED    18   0   5   1
  DEL PEAK  5(3P14.2) WILD-TYPE 103   2   7   2
D30V10, multiclass
    clus
vv   DEL PEAK  5(3P14.2) MUTATED DEL PEAK  5(3P14.2) WILD-TYPE
  R0                          18                           103
  R1                           0                             2
  R2                           5                             7
  RX                           1                             2
D30V11, continuous

Clustering(31) Variable = DEL PEAK  6(3Q26.31) MUTATION ANALYSIS
D31V1, survival
                                sevent
clus2                              0   1
  DEL PEAK  6(3Q26.31) MUTATED    11   3
  DEL PEAK  6(3Q26.31) WILD-TYPE 106  10
  DEL PEAK  6(3Q26.31) MUTATED DEL PEAK  6(3Q26.31) WILD-TYPE 
                            14                            116 
  DEL PEAK  6(3Q26.31) MUTATED DEL PEAK  6(3Q26.31) WILD-TYPE 
                             3                             10 
$`DEL PEAK  6(3Q26.31) MUTATED`
TCGA-AF-3400 TCGA-AF-4110 TCGA-AG-3583 TCGA-AG-3894 TCGA-AG-4001 TCGA-AG-4007 
       12.72        14.50         2.01         0.99         1.02         1.02 
TCGA-AG-A026 TCGA-AG-A02G TCGA-CI-6619 TCGA-DC-6682 TCGA-DT-5265 TCGA-EI-6507 
        1.94        38.93         6.02        13.02         5.29        19.96 
TCGA-EI-7002 TCGA-G5-6233 
       11.97        18.25 

$`DEL PEAK  6(3Q26.31) WILD-TYPE`
TCGA-AF-2687 TCGA-AF-2689 TCGA-AF-2690 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-2693 
       24.13        17.95        17.23        10.62        13.55        19.10 
TCGA-AF-3911 TCGA-AF-3913 TCGA-AF-5654 TCGA-AF-6136 TCGA-AF-6655 TCGA-AF-6672 
       25.02        10.39         8.45        15.35        11.67        10.39 
TCGA-AG-3575 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3586 TCGA-AG-3587 TCGA-AG-3599 
       12.00         1.02         1.02         1.02         1.02         0.99 
TCGA-AG-3605 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3731 TCGA-AG-3742 TCGA-AG-3878 
        0.99         7.96         0.95         1.02         0.99         0.99 
TCGA-AG-3883 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3896 TCGA-AG-3999 
        1.02         0.92         1.02         0.99         1.02         1.02 
TCGA-AG-4008 TCGA-AG-4022 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H 
        1.02         0.99        20.94        13.91         6.02        25.94 
TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01J 
       23.01        17.03        15.91        13.02         1.02         1.02 
TCGA-AG-A01L TCGA-AG-A01N TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A023 
       12.00        12.00        70.03        63.98        10.98        51.98 
TCGA-AG-A025 TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AH-6544 TCGA-AH-6547 
       49.94        61.94        40.96        38.01         0.49         1.45 
TCGA-AH-6643 TCGA-AH-6644 TCGA-AH-6897 TCGA-AH-6903 TCGA-BM-6198 TCGA-CI-6620 
        0.69         0.72         4.60         1.81        10.19         6.02 
TCGA-CI-6622 TCGA-CI-6623 TCGA-CI-6624 TCGA-CL-4957 TCGA-CL-5917 TCGA-CL-5918 
        6.94         9.37         4.70        13.97        60.00         7.99 
TCGA-DC-4745 TCGA-DC-4749 TCGA-DC-5337 TCGA-DC-5869 TCGA-DC-6154 TCGA-DC-6155 
       10.98        11.01        15.02        12.99        12.00        14.01 
TCGA-DC-6156 TCGA-DC-6157 TCGA-DC-6158 TCGA-DC-6160 TCGA-DC-6681 TCGA-DC-6683 
       15.02        36.00         6.97        30.05        12.95        10.06 
TCGA-DY-A0XA TCGA-DY-A1DC TCGA-DY-A1DD TCGA-DY-A1DE TCGA-DY-A1DF TCGA-DY-A1DG 
      126.41        41.33        57.24       129.27        24.13        51.48 
TCGA-DY-A1H8 TCGA-EF-5830 TCGA-EF-5831 TCGA-EI-6506 TCGA-EI-6508 TCGA-EI-6509 
       32.58         0.49         2.40        20.55        20.91        17.00 
TCGA-EI-6510 TCGA-EI-6511 TCGA-EI-6512 TCGA-EI-6513 TCGA-EI-6514 TCGA-EI-6881 
       18.28        15.85        17.69        16.34        16.31        16.37 
TCGA-EI-6882 TCGA-EI-6883 TCGA-EI-6884 TCGA-EI-6885 TCGA-EI-6917 TCGA-EI-7004 
        8.61        11.51        10.78        13.61        17.46         8.45 
TCGA-F5-6465 TCGA-F5-6571 TCGA-F5-6702 TCGA-F5-6810 TCGA-F5-6811 TCGA-F5-6812 
        3.39         0.85         2.17         0.39         1.02         0.66 
TCGA-F5-6813 TCGA-F5-6814 TCGA-F5-6861 TCGA-F5-6863 TCGA-F5-6864 TCGA-G5-6235 
        0.69         0.53         1.08         0.76         0.46        55.76 
TCGA-G5-6572 TCGA-G5-6641 
       47.08        26.43 

  DEL PEAK  6(3Q26.31) MUTATED DEL PEAK  6(3Q26.31) WILD-TYPE 
                          0.99                           0.39 
  DEL PEAK  6(3Q26.31) MUTATED DEL PEAK  6(3Q26.31) WILD-TYPE 
                         38.93                         129.27 
  DEL PEAK  6(3Q26.31) MUTATED DEL PEAK  6(3Q26.31) WILD-TYPE 
                         8.995                         10.995 
[1] "1.0 - 38.9 (9.0)"   "0.4 - 129.3 (11.0)"
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
  "DEL PEAK  6(3Q26.31) MUTATED" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK  6(3Q26.31) WILD-TYPE"   "DEL PEAK  6(3Q26.31) MUTATED" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-3575                     TCGA-AG-3581 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-3582                     TCGA-AG-3583 
"DEL PEAK  6(3Q26.31) WILD-TYPE"   "DEL PEAK  6(3Q26.31) MUTATED" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK  6(3Q26.31) WILD-TYPE"   "DEL PEAK  6(3Q26.31) MUTATED" 
                    TCGA-AG-3896                     TCGA-AG-3999 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-4001                     TCGA-AG-4007 
  "DEL PEAK  6(3Q26.31) MUTATED"   "DEL PEAK  6(3Q26.31) MUTATED" 
                    TCGA-AG-4008                     TCGA-AG-4022 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"DEL PEAK  6(3Q26.31) WILD-TYPE"   "DEL PEAK  6(3Q26.31) MUTATED" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
  "DEL PEAK  6(3Q26.31) MUTATED" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AH-6544                     TCGA-AH-6547 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AH-6897                     TCGA-AH-6903 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
"DEL PEAK  6(3Q26.31) WILD-TYPE"   "DEL PEAK  6(3Q26.31) MUTATED" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-CL-4957                     TCGA-CL-5917 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-CL-5918                     TCGA-DC-4745 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DC-4749                     TCGA-DC-5337 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DC-6155                     TCGA-DC-6156 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DC-6157                     TCGA-DC-6158 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DC-6160                     TCGA-DC-6681 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
  "DEL PEAK  6(3Q26.31) MUTATED" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
  "DEL PEAK  6(3Q26.31) MUTATED" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-EF-5830                     TCGA-EF-5831 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-EI-6506                     TCGA-EI-6507 
"DEL PEAK  6(3Q26.31) WILD-TYPE"   "DEL PEAK  6(3Q26.31) MUTATED" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-EI-6512                     TCGA-EI-6513 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-EI-6514                     TCGA-EI-6881 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-EI-6884                     TCGA-EI-6885 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"DEL PEAK  6(3Q26.31) WILD-TYPE"   "DEL PEAK  6(3Q26.31) MUTATED" 
                    TCGA-EI-7004                     TCGA-F5-6465 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-F5-6571                     TCGA-F5-6702 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-F5-6810                     TCGA-F5-6811 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-F5-6812                     TCGA-F5-6813 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-G5-6233                     TCGA-G5-6235 
  "DEL PEAK  6(3Q26.31) MUTATED" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
  "DEL PEAK  6(3Q26.31) MUTATED" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK  6(3Q26.31) WILD-TYPE"   "DEL PEAK  6(3Q26.31) MUTATED" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-3575                     TCGA-AG-3581 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-3582                     TCGA-AG-3583 
"DEL PEAK  6(3Q26.31) WILD-TYPE"   "DEL PEAK  6(3Q26.31) MUTATED" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK  6(3Q26.31) WILD-TYPE"   "DEL PEAK  6(3Q26.31) MUTATED" 
                    TCGA-AG-3896                     TCGA-AG-3999 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-4001                     TCGA-AG-4007 
  "DEL PEAK  6(3Q26.31) MUTATED"   "DEL PEAK  6(3Q26.31) MUTATED" 
                    TCGA-AG-4008                     TCGA-AG-4022 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"DEL PEAK  6(3Q26.31) WILD-TYPE"   "DEL PEAK  6(3Q26.31) MUTATED" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
  "DEL PEAK  6(3Q26.31) MUTATED" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AH-6544                     TCGA-AH-6547 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AH-6897                     TCGA-AH-6903 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
"DEL PEAK  6(3Q26.31) WILD-TYPE"   "DEL PEAK  6(3Q26.31) MUTATED" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-CL-4957                     TCGA-CL-5917 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-CL-5918                     TCGA-DC-4745 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DC-4749                     TCGA-DC-5337 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DC-6155                     TCGA-DC-6156 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DC-6157                     TCGA-DC-6158 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DC-6160                     TCGA-DC-6681 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
  "DEL PEAK  6(3Q26.31) MUTATED" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
  "DEL PEAK  6(3Q26.31) MUTATED" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-EF-5830                     TCGA-EF-5831 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-EI-6506                     TCGA-EI-6507 
"DEL PEAK  6(3Q26.31) WILD-TYPE"   "DEL PEAK  6(3Q26.31) MUTATED" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-EI-6512                     TCGA-EI-6513 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-EI-6514                     TCGA-EI-6881 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-EI-6884                     TCGA-EI-6885 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"DEL PEAK  6(3Q26.31) WILD-TYPE"   "DEL PEAK  6(3Q26.31) MUTATED" 
                    TCGA-EI-7004                     TCGA-F5-6465 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-F5-6571                     TCGA-F5-6702 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-F5-6810                     TCGA-F5-6811 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-F5-6812                     TCGA-F5-6813 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-G5-6233                     TCGA-G5-6235 
  "DEL PEAK  6(3Q26.31) MUTATED" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
  "DEL PEAK  6(3Q26.31) MUTATED" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK  6(3Q26.31) WILD-TYPE"   "DEL PEAK  6(3Q26.31) MUTATED" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-3575                     TCGA-AG-3581 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-3582                     TCGA-AG-3583 
"DEL PEAK  6(3Q26.31) WILD-TYPE"   "DEL PEAK  6(3Q26.31) MUTATED" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK  6(3Q26.31) WILD-TYPE"   "DEL PEAK  6(3Q26.31) MUTATED" 
                    TCGA-AG-3896                     TCGA-AG-3999 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-4001                     TCGA-AG-4007 
  "DEL PEAK  6(3Q26.31) MUTATED"   "DEL PEAK  6(3Q26.31) MUTATED" 
                    TCGA-AG-4008                     TCGA-AG-4022 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"DEL PEAK  6(3Q26.31) WILD-TYPE"   "DEL PEAK  6(3Q26.31) MUTATED" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
  "DEL PEAK  6(3Q26.31) MUTATED" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AH-6544                     TCGA-AH-6547 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AH-6897                     TCGA-AH-6903 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
"DEL PEAK  6(3Q26.31) WILD-TYPE"   "DEL PEAK  6(3Q26.31) MUTATED" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-CL-4957                     TCGA-CL-5917 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-CL-5918                     TCGA-DC-4745 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DC-4749                     TCGA-DC-5337 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DC-6155                     TCGA-DC-6156 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DC-6157                     TCGA-DC-6158 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DC-6160                     TCGA-DC-6681 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
  "DEL PEAK  6(3Q26.31) MUTATED" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
  "DEL PEAK  6(3Q26.31) MUTATED" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-EF-5830                     TCGA-EF-5831 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-EI-6506                     TCGA-EI-6507 
"DEL PEAK  6(3Q26.31) WILD-TYPE"   "DEL PEAK  6(3Q26.31) MUTATED" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-EI-6512                     TCGA-EI-6513 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-EI-6514                     TCGA-EI-6881 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-EI-6884                     TCGA-EI-6885 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"DEL PEAK  6(3Q26.31) WILD-TYPE"   "DEL PEAK  6(3Q26.31) MUTATED" 
                    TCGA-EI-7004                     TCGA-F5-6465 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-F5-6571                     TCGA-F5-6702 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-F5-6810                     TCGA-F5-6811 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-F5-6812                     TCGA-F5-6813 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-G5-6233                     TCGA-G5-6235 
  "DEL PEAK  6(3Q26.31) MUTATED" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
[1] "hr=" "7"  
D31V2, continuous
                                vv
clus                             STAGE I STAGE II STAGE IIA STAGE IIB STAGE IIC
  DEL PEAK  6(3Q26.31) MUTATED         0        2         6         0         1
  DEL PEAK  6(3Q26.31) WILD-TYPE      30        6        32         2         1
                                vv
clus                             STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  DEL PEAK  6(3Q26.31) MUTATED           0          0          1          0
  DEL PEAK  6(3Q26.31) WILD-TYPE         5          9         22         14
                                vv
clus                             STAGE IV STAGE IVA
  DEL PEAK  6(3Q26.31) MUTATED          5         1
  DEL PEAK  6(3Q26.31) WILD-TYPE       12         8
D31V3, multiclass
                                vv
clus                             T1 T2 T3 T4
  DEL PEAK  6(3Q26.31) MUTATED    0  1 12  3
  DEL PEAK  6(3Q26.31) WILD-TYPE  9 28 97 11
D31V4, multiclass
    clus
vv   DEL PEAK  6(3Q26.31) MUTATED DEL PEAK  6(3Q26.31) WILD-TYPE
  T1                            0                              9
  T2                            1                             28
  T3                           12                             97
  T4                            3                             11
                                vv
clus                             N0 N1 N2
  DEL PEAK  6(3Q26.31) MUTATED    8  3  5
  DEL PEAK  6(3Q26.31) WILD-TYPE 75 42 27
D31V5, multiclass
    clus
vv   DEL PEAK  6(3Q26.31) MUTATED DEL PEAK  6(3Q26.31) WILD-TYPE
  N0                            8                             75
  N1                            3                             42
  N2                            5                             27
                                vv
clus                              M0  M1 M1A  MX
  DEL PEAK  6(3Q26.31) MUTATED    10   5   0   1
  DEL PEAK  6(3Q26.31) WILD-TYPE 113  17   2  12
D31V6, multiclass
     clus
vv    DEL PEAK  6(3Q26.31) MUTATED DEL PEAK  6(3Q26.31) WILD-TYPE
  M0                            10                            113
  M1                             5                             17
  M1A                            0                              2
  MX                             1                             12
D31V7, binary
                                cls
clus                              0  1
  DEL PEAK  6(3Q26.31) MUTATED    2 14
  DEL PEAK  6(3Q26.31) WILD-TYPE 72 74
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  6(3Q26.31) MUTATED      2   14
  DEL PEAK  6(3Q26.31) WILD-TYPE   72   74
        clus
vv       DEL PEAK  6(3Q26.31) MUTATED DEL PEAK  6(3Q26.31) WILD-TYPE
  FEMALE                            2                             72
  MALE                             14                             74
D31V8, binary
                                cls
clus                               0   1
  DEL PEAK  6(3Q26.31) MUTATED    11   4
  DEL PEAK  6(3Q26.31) WILD-TYPE 132   9
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  6(3Q26.31) MUTATED     11    4
  DEL PEAK  6(3Q26.31) WILD-TYPE  132    9
                                clus
vv                               DEL PEAK  6(3Q26.31) MUTATED
  RECTAL ADENOCARCINOMA                                    11
  RECTAL MUCINOUS ADENOCARCINOMA                            4
                                clus
vv                               DEL PEAK  6(3Q26.31) WILD-TYPE
  RECTAL ADENOCARCINOMA                                     132
  RECTAL MUCINOUS ADENOCARCINOMA                              9
D31V9, binary
                                cls
clus                               0   1
  DEL PEAK  6(3Q26.31) MUTATED     1  15
  DEL PEAK  6(3Q26.31) WILD-TYPE   5 141
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  6(3Q26.31) MUTATED      1   15
  DEL PEAK  6(3Q26.31) WILD-TYPE    5  141
     clus
vv    DEL PEAK  6(3Q26.31) MUTATED DEL PEAK  6(3Q26.31) WILD-TYPE
  NO                             1                              5
  YES                           15                            141
                                vv
clus                              R0  R1  R2  RX
  DEL PEAK  6(3Q26.31) MUTATED    10   1   3   1
  DEL PEAK  6(3Q26.31) WILD-TYPE 111   1   9   2
D31V10, multiclass
    clus
vv   DEL PEAK  6(3Q26.31) MUTATED DEL PEAK  6(3Q26.31) WILD-TYPE
  R0                           10                            111
  R1                            1                              1
  R2                            3                              9
  RX                            1                              2
D31V11, continuous

Clustering(32) Variable = DEL PEAK  7(4P13) MUTATION ANALYSIS
D32V1, survival
                             sevent
clus2                          0  1
  DEL PEAK  7(4P13) MUTATED   40  4
  DEL PEAK  7(4P13) WILD-TYPE 77  9
  DEL PEAK  7(4P13) MUTATED DEL PEAK  7(4P13) WILD-TYPE 
                         44                          86 
  DEL PEAK  7(4P13) MUTATED DEL PEAK  7(4P13) WILD-TYPE 
                          4                           9 
$`DEL PEAK  7(4P13) MUTATED`
TCGA-AF-2687 TCGA-AF-2690 TCGA-AF-2691 TCGA-AF-3400 TCGA-AF-3911 TCGA-AF-4110 
       24.13        17.23        10.62        12.72        25.02        14.50 
TCGA-AF-6136 TCGA-AF-6672 TCGA-AG-3582 TCGA-AG-3731 TCGA-AG-3883 TCGA-AG-3893 
       15.35        10.39         1.02         1.02         1.02         0.99 
TCGA-AG-3896 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-A008 TCGA-AG-A00H TCGA-AG-A00Y 
        1.02         1.02         1.02        13.91        25.94        23.01 
TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A02G TCGA-AG-A02X TCGA-AH-6643 TCGA-BM-6198 
       12.00        70.03        38.93        40.96         0.69        10.19 
TCGA-CI-6619 TCGA-CI-6620 TCGA-DC-5869 TCGA-DC-6156 TCGA-DC-6157 TCGA-DC-6158 
        6.02         6.02        12.99        15.02        36.00         6.97 
TCGA-DC-6160 TCGA-DY-A0XA TCGA-DY-A1DE TCGA-DY-A1H8 TCGA-EF-5831 TCGA-EI-6511 
       30.05       126.41       129.27        32.58         2.40        15.85 
TCGA-EI-6513 TCGA-EI-6881 TCGA-EI-7002 TCGA-F5-6571 TCGA-F5-6702 TCGA-F5-6810 
       16.34        16.37        11.97         0.85         2.17         0.39 
TCGA-F5-6813 TCGA-G5-6641 
        0.69        26.43 

$`DEL PEAK  7(4P13) WILD-TYPE`
TCGA-AF-2689 TCGA-AF-2692 TCGA-AF-2693 TCGA-AF-3913 TCGA-AF-5654 TCGA-AF-6655 
       17.95        13.55        19.10        10.39         8.45        11.67 
TCGA-AG-3575 TCGA-AG-3581 TCGA-AG-3583 TCGA-AG-3586 TCGA-AG-3587 TCGA-AG-3599 
       12.00         1.02         2.01         1.02         1.02         0.99 
TCGA-AG-3605 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3742 TCGA-AG-3878 TCGA-AG-3887 
        0.99         7.96         0.95         0.99         0.99         0.92 
TCGA-AG-3892 TCGA-AG-3894 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-4022 TCGA-AG-A002 
        1.02         0.99         1.02         1.02         0.99        20.94 
TCGA-AG-A00C TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01J 
        6.02        17.03        15.91        13.02         1.02         1.02 
TCGA-AG-A01N TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A023 TCGA-AG-A025 TCGA-AG-A026 
       12.00        63.98        10.98        51.98        49.94         1.94 
TCGA-AG-A02N TCGA-AG-A032 TCGA-AH-6544 TCGA-AH-6547 TCGA-AH-6644 TCGA-AH-6897 
       61.94        38.01         0.49         1.45         0.72         4.60 
TCGA-AH-6903 TCGA-CI-6622 TCGA-CI-6623 TCGA-CI-6624 TCGA-CL-4957 TCGA-CL-5917 
        1.81         6.94         9.37         4.70        13.97        60.00 
TCGA-CL-5918 TCGA-DC-4745 TCGA-DC-4749 TCGA-DC-5337 TCGA-DC-6154 TCGA-DC-6155 
        7.99        10.98        11.01        15.02        12.00        14.01 
TCGA-DC-6681 TCGA-DC-6682 TCGA-DC-6683 TCGA-DT-5265 TCGA-DY-A1DC TCGA-DY-A1DD 
       12.95        13.02        10.06         5.29        41.33        57.24 
TCGA-DY-A1DF TCGA-DY-A1DG TCGA-EF-5830 TCGA-EI-6506 TCGA-EI-6507 TCGA-EI-6508 
       24.13        51.48         0.49        20.55        19.96        20.91 
TCGA-EI-6509 TCGA-EI-6510 TCGA-EI-6512 TCGA-EI-6514 TCGA-EI-6882 TCGA-EI-6883 
       17.00        18.28        17.69        16.31         8.61        11.51 
TCGA-EI-6884 TCGA-EI-6885 TCGA-EI-6917 TCGA-EI-7004 TCGA-F5-6465 TCGA-F5-6811 
       10.78        13.61        17.46         8.45         3.39         1.02 
TCGA-F5-6812 TCGA-F5-6814 TCGA-F5-6861 TCGA-F5-6863 TCGA-F5-6864 TCGA-G5-6233 
        0.66         0.53         1.08         0.76         0.46        18.25 
TCGA-G5-6235 TCGA-G5-6572 
       55.76        47.08 

  DEL PEAK  7(4P13) MUTATED DEL PEAK  7(4P13) WILD-TYPE 
                       0.39                        0.46 
  DEL PEAK  7(4P13) MUTATED DEL PEAK  7(4P13) WILD-TYPE 
                     129.27                       63.98 
  DEL PEAK  7(4P13) MUTATED DEL PEAK  7(4P13) WILD-TYPE 
                     12.855                      10.585 
[1] "0.4 - 129.3 (12.9)" "0.5 - 64.0 (10.6)" 
                 TCGA-AF-2687                  TCGA-AF-2689 
  "DEL PEAK  7(4P13) MUTATED" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AF-2690                  TCGA-AF-2691 
  "DEL PEAK  7(4P13) MUTATED"   "DEL PEAK  7(4P13) MUTATED" 
                 TCGA-AF-2692                  TCGA-AF-2693 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AF-3400                  TCGA-AF-3911 
  "DEL PEAK  7(4P13) MUTATED"   "DEL PEAK  7(4P13) MUTATED" 
                 TCGA-AF-3913                  TCGA-AF-4110 
"DEL PEAK  7(4P13) WILD-TYPE"   "DEL PEAK  7(4P13) MUTATED" 
                 TCGA-AF-5654                  TCGA-AF-6136 
"DEL PEAK  7(4P13) WILD-TYPE"   "DEL PEAK  7(4P13) MUTATED" 
                 TCGA-AF-6655                  TCGA-AF-6672 
"DEL PEAK  7(4P13) WILD-TYPE"   "DEL PEAK  7(4P13) MUTATED" 
                 TCGA-AG-3575                  TCGA-AG-3581 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-3582                  TCGA-AG-3583 
  "DEL PEAK  7(4P13) MUTATED" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-3586                  TCGA-AG-3587 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-3599                  TCGA-AG-3605 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-3726                  TCGA-AG-3727 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-3731                  TCGA-AG-3742 
  "DEL PEAK  7(4P13) MUTATED" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-3878                  TCGA-AG-3883 
"DEL PEAK  7(4P13) WILD-TYPE"   "DEL PEAK  7(4P13) MUTATED" 
                 TCGA-AG-3887                  TCGA-AG-3892 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-3893                  TCGA-AG-3894 
  "DEL PEAK  7(4P13) MUTATED" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-3896                  TCGA-AG-3999 
  "DEL PEAK  7(4P13) MUTATED"   "DEL PEAK  7(4P13) MUTATED" 
                 TCGA-AG-4001                  TCGA-AG-4007 
  "DEL PEAK  7(4P13) MUTATED" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-4008                  TCGA-AG-4022 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-A002                  TCGA-AG-A008 
"DEL PEAK  7(4P13) WILD-TYPE"   "DEL PEAK  7(4P13) MUTATED" 
                 TCGA-AG-A00C                  TCGA-AG-A00H 
"DEL PEAK  7(4P13) WILD-TYPE"   "DEL PEAK  7(4P13) MUTATED" 
                 TCGA-AG-A00Y                  TCGA-AG-A011 
  "DEL PEAK  7(4P13) MUTATED" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-A014                  TCGA-AG-A015 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-A016                  TCGA-AG-A01J 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-A01L                  TCGA-AG-A01N 
  "DEL PEAK  7(4P13) MUTATED" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-A01W                  TCGA-AG-A01Y 
  "DEL PEAK  7(4P13) MUTATED" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-A020                  TCGA-AG-A023 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-A025                  TCGA-AG-A026 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-A02G                  TCGA-AG-A02N 
  "DEL PEAK  7(4P13) MUTATED" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-A02X                  TCGA-AG-A032 
  "DEL PEAK  7(4P13) MUTATED" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AH-6544                  TCGA-AH-6547 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AH-6643                  TCGA-AH-6644 
  "DEL PEAK  7(4P13) MUTATED" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AH-6897                  TCGA-AH-6903 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-BM-6198                  TCGA-CI-6619 
  "DEL PEAK  7(4P13) MUTATED"   "DEL PEAK  7(4P13) MUTATED" 
                 TCGA-CI-6620                  TCGA-CI-6622 
  "DEL PEAK  7(4P13) MUTATED" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-CI-6623                  TCGA-CI-6624 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-CL-4957                  TCGA-CL-5917 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-CL-5918                  TCGA-DC-4745 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-DC-4749                  TCGA-DC-5337 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-DC-5869                  TCGA-DC-6154 
  "DEL PEAK  7(4P13) MUTATED" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-DC-6155                  TCGA-DC-6156 
"DEL PEAK  7(4P13) WILD-TYPE"   "DEL PEAK  7(4P13) MUTATED" 
                 TCGA-DC-6157                  TCGA-DC-6158 
  "DEL PEAK  7(4P13) MUTATED"   "DEL PEAK  7(4P13) MUTATED" 
                 TCGA-DC-6160                  TCGA-DC-6681 
  "DEL PEAK  7(4P13) MUTATED" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-DC-6682                  TCGA-DC-6683 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-DT-5265                  TCGA-DY-A0XA 
"DEL PEAK  7(4P13) WILD-TYPE"   "DEL PEAK  7(4P13) MUTATED" 
                 TCGA-DY-A1DC                  TCGA-DY-A1DD 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-DY-A1DE                  TCGA-DY-A1DF 
  "DEL PEAK  7(4P13) MUTATED" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-DY-A1DG                  TCGA-DY-A1H8 
"DEL PEAK  7(4P13) WILD-TYPE"   "DEL PEAK  7(4P13) MUTATED" 
                 TCGA-EF-5830                  TCGA-EF-5831 
"DEL PEAK  7(4P13) WILD-TYPE"   "DEL PEAK  7(4P13) MUTATED" 
                 TCGA-EI-6506                  TCGA-EI-6507 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-EI-6508                  TCGA-EI-6509 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-EI-6510                  TCGA-EI-6511 
"DEL PEAK  7(4P13) WILD-TYPE"   "DEL PEAK  7(4P13) MUTATED" 
                 TCGA-EI-6512                  TCGA-EI-6513 
"DEL PEAK  7(4P13) WILD-TYPE"   "DEL PEAK  7(4P13) MUTATED" 
                 TCGA-EI-6514                  TCGA-EI-6881 
"DEL PEAK  7(4P13) WILD-TYPE"   "DEL PEAK  7(4P13) MUTATED" 
                 TCGA-EI-6882                  TCGA-EI-6883 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-EI-6884                  TCGA-EI-6885 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-EI-6917                  TCGA-EI-7002 
"DEL PEAK  7(4P13) WILD-TYPE"   "DEL PEAK  7(4P13) MUTATED" 
                 TCGA-EI-7004                  TCGA-F5-6465 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-F5-6571                  TCGA-F5-6702 
  "DEL PEAK  7(4P13) MUTATED"   "DEL PEAK  7(4P13) MUTATED" 
                 TCGA-F5-6810                  TCGA-F5-6811 
  "DEL PEAK  7(4P13) MUTATED" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-F5-6812                  TCGA-F5-6813 
"DEL PEAK  7(4P13) WILD-TYPE"   "DEL PEAK  7(4P13) MUTATED" 
                 TCGA-F5-6814                  TCGA-F5-6861 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-F5-6863                  TCGA-F5-6864 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-G5-6233                  TCGA-G5-6235 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-G5-6572                  TCGA-G5-6641 
"DEL PEAK  7(4P13) WILD-TYPE"   "DEL PEAK  7(4P13) MUTATED" 
                 TCGA-AF-2687                  TCGA-AF-2689 
  "DEL PEAK  7(4P13) MUTATED" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AF-2690                  TCGA-AF-2691 
  "DEL PEAK  7(4P13) MUTATED"   "DEL PEAK  7(4P13) MUTATED" 
                 TCGA-AF-2692                  TCGA-AF-2693 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AF-3400                  TCGA-AF-3911 
  "DEL PEAK  7(4P13) MUTATED"   "DEL PEAK  7(4P13) MUTATED" 
                 TCGA-AF-3913                  TCGA-AF-4110 
"DEL PEAK  7(4P13) WILD-TYPE"   "DEL PEAK  7(4P13) MUTATED" 
                 TCGA-AF-5654                  TCGA-AF-6136 
"DEL PEAK  7(4P13) WILD-TYPE"   "DEL PEAK  7(4P13) MUTATED" 
                 TCGA-AF-6655                  TCGA-AF-6672 
"DEL PEAK  7(4P13) WILD-TYPE"   "DEL PEAK  7(4P13) MUTATED" 
                 TCGA-AG-3575                  TCGA-AG-3581 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-3582                  TCGA-AG-3583 
  "DEL PEAK  7(4P13) MUTATED" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-3586                  TCGA-AG-3587 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-3599                  TCGA-AG-3605 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-3726                  TCGA-AG-3727 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-3731                  TCGA-AG-3742 
  "DEL PEAK  7(4P13) MUTATED" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-3878                  TCGA-AG-3883 
"DEL PEAK  7(4P13) WILD-TYPE"   "DEL PEAK  7(4P13) MUTATED" 
                 TCGA-AG-3887                  TCGA-AG-3892 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-3893                  TCGA-AG-3894 
  "DEL PEAK  7(4P13) MUTATED" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-3896                  TCGA-AG-3999 
  "DEL PEAK  7(4P13) MUTATED"   "DEL PEAK  7(4P13) MUTATED" 
                 TCGA-AG-4001                  TCGA-AG-4007 
  "DEL PEAK  7(4P13) MUTATED" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-4008                  TCGA-AG-4022 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-A002                  TCGA-AG-A008 
"DEL PEAK  7(4P13) WILD-TYPE"   "DEL PEAK  7(4P13) MUTATED" 
                 TCGA-AG-A00C                  TCGA-AG-A00H 
"DEL PEAK  7(4P13) WILD-TYPE"   "DEL PEAK  7(4P13) MUTATED" 
                 TCGA-AG-A00Y                  TCGA-AG-A011 
  "DEL PEAK  7(4P13) MUTATED" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-A014                  TCGA-AG-A015 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-A016                  TCGA-AG-A01J 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-A01L                  TCGA-AG-A01N 
  "DEL PEAK  7(4P13) MUTATED" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-A01W                  TCGA-AG-A01Y 
  "DEL PEAK  7(4P13) MUTATED" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-A020                  TCGA-AG-A023 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-A025                  TCGA-AG-A026 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-A02G                  TCGA-AG-A02N 
  "DEL PEAK  7(4P13) MUTATED" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-A02X                  TCGA-AG-A032 
  "DEL PEAK  7(4P13) MUTATED" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AH-6544                  TCGA-AH-6547 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AH-6643                  TCGA-AH-6644 
  "DEL PEAK  7(4P13) MUTATED" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AH-6897                  TCGA-AH-6903 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-BM-6198                  TCGA-CI-6619 
  "DEL PEAK  7(4P13) MUTATED"   "DEL PEAK  7(4P13) MUTATED" 
                 TCGA-CI-6620                  TCGA-CI-6622 
  "DEL PEAK  7(4P13) MUTATED" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-CI-6623                  TCGA-CI-6624 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-CL-4957                  TCGA-CL-5917 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-CL-5918                  TCGA-DC-4745 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-DC-4749                  TCGA-DC-5337 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-DC-5869                  TCGA-DC-6154 
  "DEL PEAK  7(4P13) MUTATED" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-DC-6155                  TCGA-DC-6156 
"DEL PEAK  7(4P13) WILD-TYPE"   "DEL PEAK  7(4P13) MUTATED" 
                 TCGA-DC-6157                  TCGA-DC-6158 
  "DEL PEAK  7(4P13) MUTATED"   "DEL PEAK  7(4P13) MUTATED" 
                 TCGA-DC-6160                  TCGA-DC-6681 
  "DEL PEAK  7(4P13) MUTATED" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-DC-6682                  TCGA-DC-6683 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-DT-5265                  TCGA-DY-A0XA 
"DEL PEAK  7(4P13) WILD-TYPE"   "DEL PEAK  7(4P13) MUTATED" 
                 TCGA-DY-A1DC                  TCGA-DY-A1DD 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-DY-A1DE                  TCGA-DY-A1DF 
  "DEL PEAK  7(4P13) MUTATED" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-DY-A1DG                  TCGA-DY-A1H8 
"DEL PEAK  7(4P13) WILD-TYPE"   "DEL PEAK  7(4P13) MUTATED" 
                 TCGA-EF-5830                  TCGA-EF-5831 
"DEL PEAK  7(4P13) WILD-TYPE"   "DEL PEAK  7(4P13) MUTATED" 
                 TCGA-EI-6506                  TCGA-EI-6507 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-EI-6508                  TCGA-EI-6509 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-EI-6510                  TCGA-EI-6511 
"DEL PEAK  7(4P13) WILD-TYPE"   "DEL PEAK  7(4P13) MUTATED" 
                 TCGA-EI-6512                  TCGA-EI-6513 
"DEL PEAK  7(4P13) WILD-TYPE"   "DEL PEAK  7(4P13) MUTATED" 
                 TCGA-EI-6514                  TCGA-EI-6881 
"DEL PEAK  7(4P13) WILD-TYPE"   "DEL PEAK  7(4P13) MUTATED" 
                 TCGA-EI-6882                  TCGA-EI-6883 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-EI-6884                  TCGA-EI-6885 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-EI-6917                  TCGA-EI-7002 
"DEL PEAK  7(4P13) WILD-TYPE"   "DEL PEAK  7(4P13) MUTATED" 
                 TCGA-EI-7004                  TCGA-F5-6465 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-F5-6571                  TCGA-F5-6702 
  "DEL PEAK  7(4P13) MUTATED"   "DEL PEAK  7(4P13) MUTATED" 
                 TCGA-F5-6810                  TCGA-F5-6811 
  "DEL PEAK  7(4P13) MUTATED" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-F5-6812                  TCGA-F5-6813 
"DEL PEAK  7(4P13) WILD-TYPE"   "DEL PEAK  7(4P13) MUTATED" 
                 TCGA-F5-6814                  TCGA-F5-6861 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-F5-6863                  TCGA-F5-6864 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-G5-6233                  TCGA-G5-6235 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-G5-6572                  TCGA-G5-6641 
"DEL PEAK  7(4P13) WILD-TYPE"   "DEL PEAK  7(4P13) MUTATED" 
                 TCGA-AF-2687                  TCGA-AF-2689 
  "DEL PEAK  7(4P13) MUTATED" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AF-2690                  TCGA-AF-2691 
  "DEL PEAK  7(4P13) MUTATED"   "DEL PEAK  7(4P13) MUTATED" 
                 TCGA-AF-2692                  TCGA-AF-2693 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AF-3400                  TCGA-AF-3911 
  "DEL PEAK  7(4P13) MUTATED"   "DEL PEAK  7(4P13) MUTATED" 
                 TCGA-AF-3913                  TCGA-AF-4110 
"DEL PEAK  7(4P13) WILD-TYPE"   "DEL PEAK  7(4P13) MUTATED" 
                 TCGA-AF-5654                  TCGA-AF-6136 
"DEL PEAK  7(4P13) WILD-TYPE"   "DEL PEAK  7(4P13) MUTATED" 
                 TCGA-AF-6655                  TCGA-AF-6672 
"DEL PEAK  7(4P13) WILD-TYPE"   "DEL PEAK  7(4P13) MUTATED" 
                 TCGA-AG-3575                  TCGA-AG-3581 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-3582                  TCGA-AG-3583 
  "DEL PEAK  7(4P13) MUTATED" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-3586                  TCGA-AG-3587 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-3599                  TCGA-AG-3605 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-3726                  TCGA-AG-3727 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-3731                  TCGA-AG-3742 
  "DEL PEAK  7(4P13) MUTATED" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-3878                  TCGA-AG-3883 
"DEL PEAK  7(4P13) WILD-TYPE"   "DEL PEAK  7(4P13) MUTATED" 
                 TCGA-AG-3887                  TCGA-AG-3892 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-3893                  TCGA-AG-3894 
  "DEL PEAK  7(4P13) MUTATED" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-3896                  TCGA-AG-3999 
  "DEL PEAK  7(4P13) MUTATED"   "DEL PEAK  7(4P13) MUTATED" 
                 TCGA-AG-4001                  TCGA-AG-4007 
  "DEL PEAK  7(4P13) MUTATED" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-4008                  TCGA-AG-4022 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-A002                  TCGA-AG-A008 
"DEL PEAK  7(4P13) WILD-TYPE"   "DEL PEAK  7(4P13) MUTATED" 
                 TCGA-AG-A00C                  TCGA-AG-A00H 
"DEL PEAK  7(4P13) WILD-TYPE"   "DEL PEAK  7(4P13) MUTATED" 
                 TCGA-AG-A00Y                  TCGA-AG-A011 
  "DEL PEAK  7(4P13) MUTATED" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-A014                  TCGA-AG-A015 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-A016                  TCGA-AG-A01J 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-A01L                  TCGA-AG-A01N 
  "DEL PEAK  7(4P13) MUTATED" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-A01W                  TCGA-AG-A01Y 
  "DEL PEAK  7(4P13) MUTATED" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-A020                  TCGA-AG-A023 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-A025                  TCGA-AG-A026 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-A02G                  TCGA-AG-A02N 
  "DEL PEAK  7(4P13) MUTATED" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-A02X                  TCGA-AG-A032 
  "DEL PEAK  7(4P13) MUTATED" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AH-6544                  TCGA-AH-6547 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AH-6643                  TCGA-AH-6644 
  "DEL PEAK  7(4P13) MUTATED" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AH-6897                  TCGA-AH-6903 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-BM-6198                  TCGA-CI-6619 
  "DEL PEAK  7(4P13) MUTATED"   "DEL PEAK  7(4P13) MUTATED" 
                 TCGA-CI-6620                  TCGA-CI-6622 
  "DEL PEAK  7(4P13) MUTATED" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-CI-6623                  TCGA-CI-6624 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-CL-4957                  TCGA-CL-5917 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-CL-5918                  TCGA-DC-4745 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-DC-4749                  TCGA-DC-5337 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-DC-5869                  TCGA-DC-6154 
  "DEL PEAK  7(4P13) MUTATED" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-DC-6155                  TCGA-DC-6156 
"DEL PEAK  7(4P13) WILD-TYPE"   "DEL PEAK  7(4P13) MUTATED" 
                 TCGA-DC-6157                  TCGA-DC-6158 
  "DEL PEAK  7(4P13) MUTATED"   "DEL PEAK  7(4P13) MUTATED" 
                 TCGA-DC-6160                  TCGA-DC-6681 
  "DEL PEAK  7(4P13) MUTATED" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-DC-6682                  TCGA-DC-6683 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-DT-5265                  TCGA-DY-A0XA 
"DEL PEAK  7(4P13) WILD-TYPE"   "DEL PEAK  7(4P13) MUTATED" 
                 TCGA-DY-A1DC                  TCGA-DY-A1DD 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-DY-A1DE                  TCGA-DY-A1DF 
  "DEL PEAK  7(4P13) MUTATED" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-DY-A1DG                  TCGA-DY-A1H8 
"DEL PEAK  7(4P13) WILD-TYPE"   "DEL PEAK  7(4P13) MUTATED" 
                 TCGA-EF-5830                  TCGA-EF-5831 
"DEL PEAK  7(4P13) WILD-TYPE"   "DEL PEAK  7(4P13) MUTATED" 
                 TCGA-EI-6506                  TCGA-EI-6507 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-EI-6508                  TCGA-EI-6509 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-EI-6510                  TCGA-EI-6511 
"DEL PEAK  7(4P13) WILD-TYPE"   "DEL PEAK  7(4P13) MUTATED" 
                 TCGA-EI-6512                  TCGA-EI-6513 
"DEL PEAK  7(4P13) WILD-TYPE"   "DEL PEAK  7(4P13) MUTATED" 
                 TCGA-EI-6514                  TCGA-EI-6881 
"DEL PEAK  7(4P13) WILD-TYPE"   "DEL PEAK  7(4P13) MUTATED" 
                 TCGA-EI-6882                  TCGA-EI-6883 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-EI-6884                  TCGA-EI-6885 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-EI-6917                  TCGA-EI-7002 
"DEL PEAK  7(4P13) WILD-TYPE"   "DEL PEAK  7(4P13) MUTATED" 
                 TCGA-EI-7004                  TCGA-F5-6465 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-F5-6571                  TCGA-F5-6702 
  "DEL PEAK  7(4P13) MUTATED"   "DEL PEAK  7(4P13) MUTATED" 
                 TCGA-F5-6810                  TCGA-F5-6811 
  "DEL PEAK  7(4P13) MUTATED" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-F5-6812                  TCGA-F5-6813 
"DEL PEAK  7(4P13) WILD-TYPE"   "DEL PEAK  7(4P13) MUTATED" 
                 TCGA-F5-6814                  TCGA-F5-6861 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-F5-6863                  TCGA-F5-6864 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-G5-6233                  TCGA-G5-6235 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-G5-6572                  TCGA-G5-6641 
"DEL PEAK  7(4P13) WILD-TYPE"   "DEL PEAK  7(4P13) MUTATED" 
[1] "hr=" "1.3"
D32V2, continuous
                             vv
clus                          STAGE I STAGE II STAGE IIA STAGE IIB STAGE IIC
  DEL PEAK  7(4P13) MUTATED        10        1        16         0         0
  DEL PEAK  7(4P13) WILD-TYPE      20        7        22         2         2
                             vv
clus                          STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  DEL PEAK  7(4P13) MUTATED           1          3         11          6
  DEL PEAK  7(4P13) WILD-TYPE         4          6         12          8
                             vv
clus                          STAGE IV STAGE IVA
  DEL PEAK  7(4P13) MUTATED          7         4
  DEL PEAK  7(4P13) WILD-TYPE       10         5
D32V3, multiclass
                             vv
clus                          T1 T2 T3 T4
  DEL PEAK  7(4P13) MUTATED    2 11 42  4
  DEL PEAK  7(4P13) WILD-TYPE  7 18 67 10
D32V4, multiclass
    clus
vv   DEL PEAK  7(4P13) MUTATED DEL PEAK  7(4P13) WILD-TYPE
  T1                         2                           7
  T2                        11                          18
  T3                        42                          67
  T4                         4                          10
                             vv
clus                          N0 N1 N2
  DEL PEAK  7(4P13) MUTATED   27 20 12
  DEL PEAK  7(4P13) WILD-TYPE 56 25 20
D32V5, multiclass
    clus
vv   DEL PEAK  7(4P13) MUTATED DEL PEAK  7(4P13) WILD-TYPE
  N0                        27                          56
  N1                        20                          25
  N2                        12                          20
                             vv
clus                          M0 M1 M1A MX
  DEL PEAK  7(4P13) MUTATED   44  8   1  5
  DEL PEAK  7(4P13) WILD-TYPE 79 14   1  8
D32V6, multiclass
     clus
vv    DEL PEAK  7(4P13) MUTATED DEL PEAK  7(4P13) WILD-TYPE
  M0                         44                          79
  M1                          8                          14
  M1A                         1                           1
  MX                          5                           8
D32V7, binary
                             cls
clus                           0  1
  DEL PEAK  7(4P13) MUTATED   22 37
  DEL PEAK  7(4P13) WILD-TYPE 52 51
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  7(4P13) MUTATED     22   37
  DEL PEAK  7(4P13) WILD-TYPE   52   51
        clus
vv       DEL PEAK  7(4P13) MUTATED DEL PEAK  7(4P13) WILD-TYPE
  FEMALE                        22                          52
  MALE                          37                          51
D32V8, binary
                             cls
clus                           0  1
  DEL PEAK  7(4P13) MUTATED   54  3
  DEL PEAK  7(4P13) WILD-TYPE 89 10
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  7(4P13) MUTATED     54    3
  DEL PEAK  7(4P13) WILD-TYPE   89   10
                                clus
vv                               DEL PEAK  7(4P13) MUTATED
  RECTAL ADENOCARCINOMA                                 54
  RECTAL MUCINOUS ADENOCARCINOMA                         3
                                clus
vv                               DEL PEAK  7(4P13) WILD-TYPE
  RECTAL ADENOCARCINOMA                                   89
  RECTAL MUCINOUS ADENOCARCINOMA                          10
D32V9, binary
                             cls
clus                            0   1
  DEL PEAK  7(4P13) MUTATED     6  53
  DEL PEAK  7(4P13) WILD-TYPE   0 103
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  7(4P13) MUTATED      6   53
  DEL PEAK  7(4P13) WILD-TYPE    0  103
     clus
vv    DEL PEAK  7(4P13) MUTATED DEL PEAK  7(4P13) WILD-TYPE
  NO                          6                           0
  YES                        53                         103
                             vv
clus                          R0 R1 R2 RX
  DEL PEAK  7(4P13) MUTATED   47  0  3  0
  DEL PEAK  7(4P13) WILD-TYPE 74  2  9  3
D32V10, multiclass
    clus
vv   DEL PEAK  7(4P13) MUTATED DEL PEAK  7(4P13) WILD-TYPE
  R0                        47                          74
  R1                         0                           2
  R2                         3                           9
  RX                         0                           3
D32V11, continuous

Clustering(33) Variable = DEL PEAK  8(4Q22.1) MUTATION ANALYSIS
D33V1, survival
                               sevent
clus2                            0  1
  DEL PEAK  8(4Q22.1) MUTATED   52  4
  DEL PEAK  8(4Q22.1) WILD-TYPE 65  9
  DEL PEAK  8(4Q22.1) MUTATED DEL PEAK  8(4Q22.1) WILD-TYPE 
                           56                            74 
  DEL PEAK  8(4Q22.1) MUTATED DEL PEAK  8(4Q22.1) WILD-TYPE 
                            4                             9 
$`DEL PEAK  8(4Q22.1) MUTATED`
TCGA-AF-2687 TCGA-AF-2690 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-2693 TCGA-AF-3400 
       24.13        17.23        10.62        13.55        19.10        12.72 
TCGA-AF-3911 TCGA-AF-4110 TCGA-AF-6136 TCGA-AG-3582 TCGA-AG-3883 TCGA-AG-3896 
       25.02        14.50        15.35         1.02         1.02         1.02 
TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C 
        1.02         1.02         1.02         1.02        13.91         6.02 
TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A026 
       25.94        23.01        12.00        70.03        63.98         1.94 
TCGA-AG-A02X TCGA-AH-6544 TCGA-AH-6643 TCGA-BM-6198 TCGA-CI-6619 TCGA-CI-6620 
       40.96         0.49         0.69        10.19         6.02         6.02 
TCGA-CI-6624 TCGA-DC-4749 TCGA-DC-5869 TCGA-DC-6156 TCGA-DC-6157 TCGA-DC-6158 
        4.70        11.01        12.99        15.02        36.00         6.97 
TCGA-DC-6160 TCGA-DC-6682 TCGA-DY-A0XA TCGA-DY-A1DE TCGA-EF-5831 TCGA-EI-6508 
       30.05        13.02       126.41       129.27         2.40        20.91 
TCGA-EI-6509 TCGA-EI-6511 TCGA-EI-6513 TCGA-EI-6881 TCGA-EI-7002 TCGA-EI-7004 
       17.00        15.85        16.34        16.37        11.97         8.45 
TCGA-F5-6571 TCGA-F5-6702 TCGA-F5-6810 TCGA-F5-6811 TCGA-F5-6812 TCGA-F5-6813 
        0.85         2.17         0.39         1.02         0.66         0.69 
TCGA-G5-6233 TCGA-G5-6641 
       18.25        26.43 

$`DEL PEAK  8(4Q22.1) WILD-TYPE`
TCGA-AF-2689 TCGA-AF-3913 TCGA-AF-5654 TCGA-AF-6655 TCGA-AF-6672 TCGA-AG-3575 
       17.95        10.39         8.45        11.67        10.39        12.00 
TCGA-AG-3581 TCGA-AG-3583 TCGA-AG-3586 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3605 
        1.02         2.01         1.02         1.02         0.99         0.99 
TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3731 TCGA-AG-3742 TCGA-AG-3878 TCGA-AG-3887 
        7.96         0.95         1.02         0.99         0.99         0.92 
TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-4022 TCGA-AG-A002 TCGA-AG-A011 
        1.02         0.99         0.99         0.99        20.94        17.03 
TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01J TCGA-AG-A01N TCGA-AG-A020 
       15.91        13.02         1.02         1.02        12.00        10.98 
TCGA-AG-A023 TCGA-AG-A025 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A032 TCGA-AH-6547 
       51.98        49.94        38.93        61.94        38.01         1.45 
TCGA-AH-6644 TCGA-AH-6897 TCGA-AH-6903 TCGA-CI-6622 TCGA-CI-6623 TCGA-CL-4957 
        0.72         4.60         1.81         6.94         9.37        13.97 
TCGA-CL-5917 TCGA-CL-5918 TCGA-DC-4745 TCGA-DC-5337 TCGA-DC-6154 TCGA-DC-6155 
       60.00         7.99        10.98        15.02        12.00        14.01 
TCGA-DC-6681 TCGA-DC-6683 TCGA-DT-5265 TCGA-DY-A1DC TCGA-DY-A1DD TCGA-DY-A1DF 
       12.95        10.06         5.29        41.33        57.24        24.13 
TCGA-DY-A1DG TCGA-DY-A1H8 TCGA-EF-5830 TCGA-EI-6506 TCGA-EI-6507 TCGA-EI-6510 
       51.48        32.58         0.49        20.55        19.96        18.28 
TCGA-EI-6512 TCGA-EI-6514 TCGA-EI-6882 TCGA-EI-6883 TCGA-EI-6884 TCGA-EI-6885 
       17.69        16.31         8.61        11.51        10.78        13.61 
TCGA-EI-6917 TCGA-F5-6465 TCGA-F5-6814 TCGA-F5-6861 TCGA-F5-6863 TCGA-F5-6864 
       17.46         3.39         0.53         1.08         0.76         0.46 
TCGA-G5-6235 TCGA-G5-6572 
       55.76        47.08 

  DEL PEAK  8(4Q22.1) MUTATED DEL PEAK  8(4Q22.1) WILD-TYPE 
                         0.39                          0.46 
  DEL PEAK  8(4Q22.1) MUTATED DEL PEAK  8(4Q22.1) WILD-TYPE 
                       129.27                         61.94 
  DEL PEAK  8(4Q22.1) MUTATED DEL PEAK  8(4Q22.1) WILD-TYPE 
                       12.360                        10.585 
[1] "0.4 - 129.3 (12.4)" "0.5 - 61.9 (10.6)" 
                   TCGA-AF-2687                    TCGA-AF-2689 
  "DEL PEAK  8(4Q22.1) MUTATED" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
  "DEL PEAK  8(4Q22.1) MUTATED"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-AF-2692                    TCGA-AF-2693 
  "DEL PEAK  8(4Q22.1) MUTATED"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-AF-3400                    TCGA-AF-3911 
  "DEL PEAK  8(4Q22.1) MUTATED"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-AF-3913                    TCGA-AF-4110 
"DEL PEAK  8(4Q22.1) WILD-TYPE"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"DEL PEAK  8(4Q22.1) WILD-TYPE"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-3575                    TCGA-AG-3581 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-3582                    TCGA-AG-3583 
  "DEL PEAK  8(4Q22.1) MUTATED" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-3586                    TCGA-AG-3587 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-3599                    TCGA-AG-3605 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-3726                    TCGA-AG-3727 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-3731                    TCGA-AG-3742 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-3878                    TCGA-AG-3883 
"DEL PEAK  8(4Q22.1) WILD-TYPE"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-3896                    TCGA-AG-3999 
  "DEL PEAK  8(4Q22.1) MUTATED"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-AG-4001                    TCGA-AG-4007 
  "DEL PEAK  8(4Q22.1) MUTATED"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-AG-4008                    TCGA-AG-4022 
  "DEL PEAK  8(4Q22.1) MUTATED" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-A002                    TCGA-AG-A008 
"DEL PEAK  8(4Q22.1) WILD-TYPE"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-AG-A00C                    TCGA-AG-A00H 
  "DEL PEAK  8(4Q22.1) MUTATED"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-AG-A00Y                    TCGA-AG-A011 
  "DEL PEAK  8(4Q22.1) MUTATED" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-A014                    TCGA-AG-A015 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-A016                    TCGA-AG-A01J 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-A01L                    TCGA-AG-A01N 
  "DEL PEAK  8(4Q22.1) MUTATED" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-A01W                    TCGA-AG-A01Y 
  "DEL PEAK  8(4Q22.1) MUTATED"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-AG-A020                    TCGA-AG-A023 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-A025                    TCGA-AG-A026 
"DEL PEAK  8(4Q22.1) WILD-TYPE"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-AG-A02G                    TCGA-AG-A02N 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-A02X                    TCGA-AG-A032 
  "DEL PEAK  8(4Q22.1) MUTATED" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AH-6544                    TCGA-AH-6547 
  "DEL PEAK  8(4Q22.1) MUTATED" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AH-6643                    TCGA-AH-6644 
  "DEL PEAK  8(4Q22.1) MUTATED" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AH-6897                    TCGA-AH-6903 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-BM-6198                    TCGA-CI-6619 
  "DEL PEAK  8(4Q22.1) MUTATED"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-CI-6620                    TCGA-CI-6622 
  "DEL PEAK  8(4Q22.1) MUTATED" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-CI-6623                    TCGA-CI-6624 
"DEL PEAK  8(4Q22.1) WILD-TYPE"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-CL-4957                    TCGA-CL-5917 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-CL-5918                    TCGA-DC-4745 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-DC-4749                    TCGA-DC-5337 
  "DEL PEAK  8(4Q22.1) MUTATED" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-DC-5869                    TCGA-DC-6154 
  "DEL PEAK  8(4Q22.1) MUTATED" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-DC-6155                    TCGA-DC-6156 
"DEL PEAK  8(4Q22.1) WILD-TYPE"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-DC-6157                    TCGA-DC-6158 
  "DEL PEAK  8(4Q22.1) MUTATED"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-DC-6160                    TCGA-DC-6681 
  "DEL PEAK  8(4Q22.1) MUTATED" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-DC-6682                    TCGA-DC-6683 
  "DEL PEAK  8(4Q22.1) MUTATED" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-DT-5265                    TCGA-DY-A0XA 
"DEL PEAK  8(4Q22.1) WILD-TYPE"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-DY-A1DC                    TCGA-DY-A1DD 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-DY-A1DE                    TCGA-DY-A1DF 
  "DEL PEAK  8(4Q22.1) MUTATED" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-DY-A1DG                    TCGA-DY-A1H8 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-EF-5830                    TCGA-EF-5831 
"DEL PEAK  8(4Q22.1) WILD-TYPE"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-EI-6506                    TCGA-EI-6507 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-EI-6508                    TCGA-EI-6509 
  "DEL PEAK  8(4Q22.1) MUTATED"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-EI-6510                    TCGA-EI-6511 
"DEL PEAK  8(4Q22.1) WILD-TYPE"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-EI-6512                    TCGA-EI-6513 
"DEL PEAK  8(4Q22.1) WILD-TYPE"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-EI-6514                    TCGA-EI-6881 
"DEL PEAK  8(4Q22.1) WILD-TYPE"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-EI-6882                    TCGA-EI-6883 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-EI-6884                    TCGA-EI-6885 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-EI-6917                    TCGA-EI-7002 
"DEL PEAK  8(4Q22.1) WILD-TYPE"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-EI-7004                    TCGA-F5-6465 
  "DEL PEAK  8(4Q22.1) MUTATED" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-F5-6571                    TCGA-F5-6702 
  "DEL PEAK  8(4Q22.1) MUTATED"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-F5-6810                    TCGA-F5-6811 
  "DEL PEAK  8(4Q22.1) MUTATED"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-F5-6812                    TCGA-F5-6813 
  "DEL PEAK  8(4Q22.1) MUTATED"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-F5-6814                    TCGA-F5-6861 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-F5-6863                    TCGA-F5-6864 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-G5-6233                    TCGA-G5-6235 
  "DEL PEAK  8(4Q22.1) MUTATED" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-G5-6572                    TCGA-G5-6641 
"DEL PEAK  8(4Q22.1) WILD-TYPE"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-AF-2687                    TCGA-AF-2689 
  "DEL PEAK  8(4Q22.1) MUTATED" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
  "DEL PEAK  8(4Q22.1) MUTATED"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-AF-2692                    TCGA-AF-2693 
  "DEL PEAK  8(4Q22.1) MUTATED"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-AF-3400                    TCGA-AF-3911 
  "DEL PEAK  8(4Q22.1) MUTATED"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-AF-3913                    TCGA-AF-4110 
"DEL PEAK  8(4Q22.1) WILD-TYPE"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"DEL PEAK  8(4Q22.1) WILD-TYPE"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-3575                    TCGA-AG-3581 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-3582                    TCGA-AG-3583 
  "DEL PEAK  8(4Q22.1) MUTATED" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-3586                    TCGA-AG-3587 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-3599                    TCGA-AG-3605 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-3726                    TCGA-AG-3727 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-3731                    TCGA-AG-3742 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-3878                    TCGA-AG-3883 
"DEL PEAK  8(4Q22.1) WILD-TYPE"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-3896                    TCGA-AG-3999 
  "DEL PEAK  8(4Q22.1) MUTATED"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-AG-4001                    TCGA-AG-4007 
  "DEL PEAK  8(4Q22.1) MUTATED"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-AG-4008                    TCGA-AG-4022 
  "DEL PEAK  8(4Q22.1) MUTATED" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-A002                    TCGA-AG-A008 
"DEL PEAK  8(4Q22.1) WILD-TYPE"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-AG-A00C                    TCGA-AG-A00H 
  "DEL PEAK  8(4Q22.1) MUTATED"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-AG-A00Y                    TCGA-AG-A011 
  "DEL PEAK  8(4Q22.1) MUTATED" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-A014                    TCGA-AG-A015 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-A016                    TCGA-AG-A01J 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-A01L                    TCGA-AG-A01N 
  "DEL PEAK  8(4Q22.1) MUTATED" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-A01W                    TCGA-AG-A01Y 
  "DEL PEAK  8(4Q22.1) MUTATED"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-AG-A020                    TCGA-AG-A023 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-A025                    TCGA-AG-A026 
"DEL PEAK  8(4Q22.1) WILD-TYPE"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-AG-A02G                    TCGA-AG-A02N 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-A02X                    TCGA-AG-A032 
  "DEL PEAK  8(4Q22.1) MUTATED" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AH-6544                    TCGA-AH-6547 
  "DEL PEAK  8(4Q22.1) MUTATED" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AH-6643                    TCGA-AH-6644 
  "DEL PEAK  8(4Q22.1) MUTATED" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AH-6897                    TCGA-AH-6903 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-BM-6198                    TCGA-CI-6619 
  "DEL PEAK  8(4Q22.1) MUTATED"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-CI-6620                    TCGA-CI-6622 
  "DEL PEAK  8(4Q22.1) MUTATED" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-CI-6623                    TCGA-CI-6624 
"DEL PEAK  8(4Q22.1) WILD-TYPE"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-CL-4957                    TCGA-CL-5917 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-CL-5918                    TCGA-DC-4745 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-DC-4749                    TCGA-DC-5337 
  "DEL PEAK  8(4Q22.1) MUTATED" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-DC-5869                    TCGA-DC-6154 
  "DEL PEAK  8(4Q22.1) MUTATED" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-DC-6155                    TCGA-DC-6156 
"DEL PEAK  8(4Q22.1) WILD-TYPE"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-DC-6157                    TCGA-DC-6158 
  "DEL PEAK  8(4Q22.1) MUTATED"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-DC-6160                    TCGA-DC-6681 
  "DEL PEAK  8(4Q22.1) MUTATED" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-DC-6682                    TCGA-DC-6683 
  "DEL PEAK  8(4Q22.1) MUTATED" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-DT-5265                    TCGA-DY-A0XA 
"DEL PEAK  8(4Q22.1) WILD-TYPE"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-DY-A1DC                    TCGA-DY-A1DD 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-DY-A1DE                    TCGA-DY-A1DF 
  "DEL PEAK  8(4Q22.1) MUTATED" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-DY-A1DG                    TCGA-DY-A1H8 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-EF-5830                    TCGA-EF-5831 
"DEL PEAK  8(4Q22.1) WILD-TYPE"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-EI-6506                    TCGA-EI-6507 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-EI-6508                    TCGA-EI-6509 
  "DEL PEAK  8(4Q22.1) MUTATED"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-EI-6510                    TCGA-EI-6511 
"DEL PEAK  8(4Q22.1) WILD-TYPE"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-EI-6512                    TCGA-EI-6513 
"DEL PEAK  8(4Q22.1) WILD-TYPE"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-EI-6514                    TCGA-EI-6881 
"DEL PEAK  8(4Q22.1) WILD-TYPE"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-EI-6882                    TCGA-EI-6883 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-EI-6884                    TCGA-EI-6885 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-EI-6917                    TCGA-EI-7002 
"DEL PEAK  8(4Q22.1) WILD-TYPE"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-EI-7004                    TCGA-F5-6465 
  "DEL PEAK  8(4Q22.1) MUTATED" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-F5-6571                    TCGA-F5-6702 
  "DEL PEAK  8(4Q22.1) MUTATED"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-F5-6810                    TCGA-F5-6811 
  "DEL PEAK  8(4Q22.1) MUTATED"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-F5-6812                    TCGA-F5-6813 
  "DEL PEAK  8(4Q22.1) MUTATED"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-F5-6814                    TCGA-F5-6861 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-F5-6863                    TCGA-F5-6864 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-G5-6233                    TCGA-G5-6235 
  "DEL PEAK  8(4Q22.1) MUTATED" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-G5-6572                    TCGA-G5-6641 
"DEL PEAK  8(4Q22.1) WILD-TYPE"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-AF-2687                    TCGA-AF-2689 
  "DEL PEAK  8(4Q22.1) MUTATED" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
  "DEL PEAK  8(4Q22.1) MUTATED"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-AF-2692                    TCGA-AF-2693 
  "DEL PEAK  8(4Q22.1) MUTATED"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-AF-3400                    TCGA-AF-3911 
  "DEL PEAK  8(4Q22.1) MUTATED"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-AF-3913                    TCGA-AF-4110 
"DEL PEAK  8(4Q22.1) WILD-TYPE"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"DEL PEAK  8(4Q22.1) WILD-TYPE"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-3575                    TCGA-AG-3581 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-3582                    TCGA-AG-3583 
  "DEL PEAK  8(4Q22.1) MUTATED" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-3586                    TCGA-AG-3587 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-3599                    TCGA-AG-3605 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-3726                    TCGA-AG-3727 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-3731                    TCGA-AG-3742 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-3878                    TCGA-AG-3883 
"DEL PEAK  8(4Q22.1) WILD-TYPE"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-3896                    TCGA-AG-3999 
  "DEL PEAK  8(4Q22.1) MUTATED"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-AG-4001                    TCGA-AG-4007 
  "DEL PEAK  8(4Q22.1) MUTATED"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-AG-4008                    TCGA-AG-4022 
  "DEL PEAK  8(4Q22.1) MUTATED" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-A002                    TCGA-AG-A008 
"DEL PEAK  8(4Q22.1) WILD-TYPE"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-AG-A00C                    TCGA-AG-A00H 
  "DEL PEAK  8(4Q22.1) MUTATED"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-AG-A00Y                    TCGA-AG-A011 
  "DEL PEAK  8(4Q22.1) MUTATED" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-A014                    TCGA-AG-A015 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-A016                    TCGA-AG-A01J 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-A01L                    TCGA-AG-A01N 
  "DEL PEAK  8(4Q22.1) MUTATED" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-A01W                    TCGA-AG-A01Y 
  "DEL PEAK  8(4Q22.1) MUTATED"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-AG-A020                    TCGA-AG-A023 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-A025                    TCGA-AG-A026 
"DEL PEAK  8(4Q22.1) WILD-TYPE"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-AG-A02G                    TCGA-AG-A02N 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-A02X                    TCGA-AG-A032 
  "DEL PEAK  8(4Q22.1) MUTATED" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AH-6544                    TCGA-AH-6547 
  "DEL PEAK  8(4Q22.1) MUTATED" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AH-6643                    TCGA-AH-6644 
  "DEL PEAK  8(4Q22.1) MUTATED" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AH-6897                    TCGA-AH-6903 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-BM-6198                    TCGA-CI-6619 
  "DEL PEAK  8(4Q22.1) MUTATED"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-CI-6620                    TCGA-CI-6622 
  "DEL PEAK  8(4Q22.1) MUTATED" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-CI-6623                    TCGA-CI-6624 
"DEL PEAK  8(4Q22.1) WILD-TYPE"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-CL-4957                    TCGA-CL-5917 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-CL-5918                    TCGA-DC-4745 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-DC-4749                    TCGA-DC-5337 
  "DEL PEAK  8(4Q22.1) MUTATED" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-DC-5869                    TCGA-DC-6154 
  "DEL PEAK  8(4Q22.1) MUTATED" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-DC-6155                    TCGA-DC-6156 
"DEL PEAK  8(4Q22.1) WILD-TYPE"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-DC-6157                    TCGA-DC-6158 
  "DEL PEAK  8(4Q22.1) MUTATED"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-DC-6160                    TCGA-DC-6681 
  "DEL PEAK  8(4Q22.1) MUTATED" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-DC-6682                    TCGA-DC-6683 
  "DEL PEAK  8(4Q22.1) MUTATED" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-DT-5265                    TCGA-DY-A0XA 
"DEL PEAK  8(4Q22.1) WILD-TYPE"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-DY-A1DC                    TCGA-DY-A1DD 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-DY-A1DE                    TCGA-DY-A1DF 
  "DEL PEAK  8(4Q22.1) MUTATED" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-DY-A1DG                    TCGA-DY-A1H8 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-EF-5830                    TCGA-EF-5831 
"DEL PEAK  8(4Q22.1) WILD-TYPE"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-EI-6506                    TCGA-EI-6507 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-EI-6508                    TCGA-EI-6509 
  "DEL PEAK  8(4Q22.1) MUTATED"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-EI-6510                    TCGA-EI-6511 
"DEL PEAK  8(4Q22.1) WILD-TYPE"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-EI-6512                    TCGA-EI-6513 
"DEL PEAK  8(4Q22.1) WILD-TYPE"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-EI-6514                    TCGA-EI-6881 
"DEL PEAK  8(4Q22.1) WILD-TYPE"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-EI-6882                    TCGA-EI-6883 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-EI-6884                    TCGA-EI-6885 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-EI-6917                    TCGA-EI-7002 
"DEL PEAK  8(4Q22.1) WILD-TYPE"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-EI-7004                    TCGA-F5-6465 
  "DEL PEAK  8(4Q22.1) MUTATED" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-F5-6571                    TCGA-F5-6702 
  "DEL PEAK  8(4Q22.1) MUTATED"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-F5-6810                    TCGA-F5-6811 
  "DEL PEAK  8(4Q22.1) MUTATED"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-F5-6812                    TCGA-F5-6813 
  "DEL PEAK  8(4Q22.1) MUTATED"   "DEL PEAK  8(4Q22.1) MUTATED" 
                   TCGA-F5-6814                    TCGA-F5-6861 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-F5-6863                    TCGA-F5-6864 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-G5-6233                    TCGA-G5-6235 
  "DEL PEAK  8(4Q22.1) MUTATED" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-G5-6572                    TCGA-G5-6641 
"DEL PEAK  8(4Q22.1) WILD-TYPE"   "DEL PEAK  8(4Q22.1) MUTATED" 
[1] "hr=" "1.6"
D33V2, continuous
                               vv
clus                            STAGE I STAGE II STAGE IIA STAGE IIB STAGE IIC
  DEL PEAK  8(4Q22.1) MUTATED        12        3        20         0         1
  DEL PEAK  8(4Q22.1) WILD-TYPE      18        5        18         2         1
                               vv
clus                            STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  DEL PEAK  8(4Q22.1) MUTATED           2          2         13          8
  DEL PEAK  8(4Q22.1) WILD-TYPE         3          7         10          6
                               vv
clus                            STAGE IV STAGE IVA
  DEL PEAK  8(4Q22.1) MUTATED          5         5
  DEL PEAK  8(4Q22.1) WILD-TYPE       12         4
D33V3, multiclass
                               vv
clus                            T1 T2 T3 T4
  DEL PEAK  8(4Q22.1) MUTATED    2 11 52  7
  DEL PEAK  8(4Q22.1) WILD-TYPE  7 18 57  7
D33V4, multiclass
    clus
vv   DEL PEAK  8(4Q22.1) MUTATED DEL PEAK  8(4Q22.1) WILD-TYPE
  T1                           2                             7
  T2                          11                            18
  T3                          52                            57
  T4                           7                             7
                               vv
clus                            N0 N1 N2
  DEL PEAK  8(4Q22.1) MUTATED   35 21 16
  DEL PEAK  8(4Q22.1) WILD-TYPE 48 24 16
D33V5, multiclass
    clus
vv   DEL PEAK  8(4Q22.1) MUTATED DEL PEAK  8(4Q22.1) WILD-TYPE
  N0                          35                            48
  N1                          21                            24
  N2                          16                            16
                               vv
clus                            M0 M1 M1A MX
  DEL PEAK  8(4Q22.1) MUTATED   56  8   1  6
  DEL PEAK  8(4Q22.1) WILD-TYPE 67 14   1  7
D33V6, multiclass
     clus
vv    DEL PEAK  8(4Q22.1) MUTATED DEL PEAK  8(4Q22.1) WILD-TYPE
  M0                           56                            67
  M1                            8                            14
  M1A                           1                             1
  MX                            6                             7
D33V7, binary
                               cls
clus                             0  1
  DEL PEAK  8(4Q22.1) MUTATED   28 44
  DEL PEAK  8(4Q22.1) WILD-TYPE 46 44
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  8(4Q22.1) MUTATED     28   44
  DEL PEAK  8(4Q22.1) WILD-TYPE   46   44
        clus
vv       DEL PEAK  8(4Q22.1) MUTATED DEL PEAK  8(4Q22.1) WILD-TYPE
  FEMALE                          28                            46
  MALE                            44                            44
D33V8, binary
                               cls
clus                             0  1
  DEL PEAK  8(4Q22.1) MUTATED   64  4
  DEL PEAK  8(4Q22.1) WILD-TYPE 79  9
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  8(4Q22.1) MUTATED     64    4
  DEL PEAK  8(4Q22.1) WILD-TYPE   79    9
                                clus
vv                               DEL PEAK  8(4Q22.1) MUTATED
  RECTAL ADENOCARCINOMA                                   64
  RECTAL MUCINOUS ADENOCARCINOMA                           4
                                clus
vv                               DEL PEAK  8(4Q22.1) WILD-TYPE
  RECTAL ADENOCARCINOMA                                     79
  RECTAL MUCINOUS ADENOCARCINOMA                             9
D33V9, binary
                               cls
clus                             0  1
  DEL PEAK  8(4Q22.1) MUTATED    5 67
  DEL PEAK  8(4Q22.1) WILD-TYPE  1 89
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  8(4Q22.1) MUTATED      5   67
  DEL PEAK  8(4Q22.1) WILD-TYPE    1   89
     clus
vv    DEL PEAK  8(4Q22.1) MUTATED DEL PEAK  8(4Q22.1) WILD-TYPE
  NO                            5                             1
  YES                          67                            89
                               vv
clus                            R0 R1 R2 RX
  DEL PEAK  8(4Q22.1) MUTATED   56  1  3  0
  DEL PEAK  8(4Q22.1) WILD-TYPE 65  1  9  3
D33V10, multiclass
    clus
vv   DEL PEAK  8(4Q22.1) MUTATED DEL PEAK  8(4Q22.1) WILD-TYPE
  R0                          56                            65
  R1                           1                             1
  R2                           3                             9
  RX                           0                             3
D33V11, continuous

Clustering(34) Variable = DEL PEAK  9(4Q35.1) MUTATION ANALYSIS
D34V1, survival
                               sevent
clus2                            0  1
  DEL PEAK  9(4Q35.1) MUTATED   48  5
  DEL PEAK  9(4Q35.1) WILD-TYPE 69  8
  DEL PEAK  9(4Q35.1) MUTATED DEL PEAK  9(4Q35.1) WILD-TYPE 
                           53                            77 
  DEL PEAK  9(4Q35.1) MUTATED DEL PEAK  9(4Q35.1) WILD-TYPE 
                            5                             8 
$`DEL PEAK  9(4Q35.1) MUTATED`
TCGA-AF-2687 TCGA-AF-2690 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-2693 TCGA-AF-3400 
       24.13        17.23        10.62        13.55        19.10        12.72 
TCGA-AF-3911 TCGA-AF-3913 TCGA-AF-4110 TCGA-AF-6136 TCGA-AG-3582 TCGA-AG-3587 
       25.02        10.39        14.50        15.35         1.02         1.02 
TCGA-AG-3742 TCGA-AG-3883 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-A008 TCGA-AG-A00H 
        0.99         1.02         1.02         1.02        13.91        25.94 
TCGA-AG-A00Y TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A02X TCGA-AH-6544 
       23.01        12.00        70.03        63.98        40.96         0.49 
TCGA-AH-6643 TCGA-BM-6198 TCGA-CI-6619 TCGA-CI-6620 TCGA-CI-6624 TCGA-DC-4749 
        0.69        10.19         6.02         6.02         4.70        11.01 
TCGA-DC-5869 TCGA-DC-6156 TCGA-DC-6157 TCGA-DC-6158 TCGA-DC-6160 TCGA-DY-A0XA 
       12.99        15.02        36.00         6.97        30.05       126.41 
TCGA-DY-A1DE TCGA-DY-A1DF TCGA-EF-5831 TCGA-EI-6509 TCGA-EI-6511 TCGA-EI-6513 
      129.27        24.13         2.40        17.00        15.85        16.34 
TCGA-EI-6881 TCGA-EI-7002 TCGA-F5-6571 TCGA-F5-6702 TCGA-F5-6810 TCGA-F5-6811 
       16.37        11.97         0.85         2.17         0.39         1.02 
TCGA-F5-6812 TCGA-F5-6814 TCGA-F5-6864 TCGA-G5-6233 TCGA-G5-6641 
        0.66         0.53         0.46        18.25        26.43 

$`DEL PEAK  9(4Q35.1) WILD-TYPE`
TCGA-AF-2689 TCGA-AF-5654 TCGA-AF-6655 TCGA-AF-6672 TCGA-AG-3575 TCGA-AG-3581 
       17.95         8.45        11.67        10.39        12.00         1.02 
TCGA-AG-3583 TCGA-AG-3586 TCGA-AG-3599 TCGA-AG-3605 TCGA-AG-3726 TCGA-AG-3727 
        2.01         1.02         0.99         0.99         7.96         0.95 
TCGA-AG-3731 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 
        1.02         0.99         0.92         1.02         0.99         0.99 
TCGA-AG-3896 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-4022 TCGA-AG-A002 TCGA-AG-A00C 
        1.02         1.02         1.02         0.99        20.94         6.02 
TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01J TCGA-AG-A01N 
       17.03        15.91        13.02         1.02         1.02        12.00 
TCGA-AG-A020 TCGA-AG-A023 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N 
       10.98        51.98        49.94         1.94        38.93        61.94 
TCGA-AG-A032 TCGA-AH-6547 TCGA-AH-6644 TCGA-AH-6897 TCGA-AH-6903 TCGA-CI-6622 
       38.01         1.45         0.72         4.60         1.81         6.94 
TCGA-CI-6623 TCGA-CL-4957 TCGA-CL-5917 TCGA-CL-5918 TCGA-DC-4745 TCGA-DC-5337 
        9.37        13.97        60.00         7.99        10.98        15.02 
TCGA-DC-6154 TCGA-DC-6155 TCGA-DC-6681 TCGA-DC-6682 TCGA-DC-6683 TCGA-DT-5265 
       12.00        14.01        12.95        13.02        10.06         5.29 
TCGA-DY-A1DC TCGA-DY-A1DD TCGA-DY-A1DG TCGA-DY-A1H8 TCGA-EF-5830 TCGA-EI-6506 
       41.33        57.24        51.48        32.58         0.49        20.55 
TCGA-EI-6507 TCGA-EI-6508 TCGA-EI-6510 TCGA-EI-6512 TCGA-EI-6514 TCGA-EI-6882 
       19.96        20.91        18.28        17.69        16.31         8.61 
TCGA-EI-6883 TCGA-EI-6884 TCGA-EI-6885 TCGA-EI-6917 TCGA-EI-7004 TCGA-F5-6465 
       11.51        10.78        13.61        17.46         8.45         3.39 
TCGA-F5-6813 TCGA-F5-6861 TCGA-F5-6863 TCGA-G5-6235 TCGA-G5-6572 
        0.69         1.08         0.76        55.76        47.08 

  DEL PEAK  9(4Q35.1) MUTATED DEL PEAK  9(4Q35.1) WILD-TYPE 
                         0.39                          0.49 
  DEL PEAK  9(4Q35.1) MUTATED DEL PEAK  9(4Q35.1) WILD-TYPE 
                       129.27                         61.94 
  DEL PEAK  9(4Q35.1) MUTATED DEL PEAK  9(4Q35.1) WILD-TYPE 
                        12.72                         10.39 
[1] "0.4 - 129.3 (12.7)" "0.5 - 61.9 (10.4)" 
                   TCGA-AF-2687                    TCGA-AF-2689 
  "DEL PEAK  9(4Q35.1) MUTATED" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
  "DEL PEAK  9(4Q35.1) MUTATED"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-AF-2692                    TCGA-AF-2693 
  "DEL PEAK  9(4Q35.1) MUTATED"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-AF-3400                    TCGA-AF-3911 
  "DEL PEAK  9(4Q35.1) MUTATED"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-AF-3913                    TCGA-AF-4110 
  "DEL PEAK  9(4Q35.1) MUTATED"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"DEL PEAK  9(4Q35.1) WILD-TYPE"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-3575                    TCGA-AG-3581 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-3582                    TCGA-AG-3583 
  "DEL PEAK  9(4Q35.1) MUTATED" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-3586                    TCGA-AG-3587 
"DEL PEAK  9(4Q35.1) WILD-TYPE"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-AG-3599                    TCGA-AG-3605 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-3726                    TCGA-AG-3727 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-3731                    TCGA-AG-3742 
"DEL PEAK  9(4Q35.1) WILD-TYPE"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-AG-3878                    TCGA-AG-3883 
"DEL PEAK  9(4Q35.1) WILD-TYPE"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-3896                    TCGA-AG-3999 
"DEL PEAK  9(4Q35.1) WILD-TYPE"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-AG-4001                    TCGA-AG-4007 
  "DEL PEAK  9(4Q35.1) MUTATED" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-4008                    TCGA-AG-4022 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-A002                    TCGA-AG-A008 
"DEL PEAK  9(4Q35.1) WILD-TYPE"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-AG-A00C                    TCGA-AG-A00H 
"DEL PEAK  9(4Q35.1) WILD-TYPE"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-AG-A00Y                    TCGA-AG-A011 
  "DEL PEAK  9(4Q35.1) MUTATED" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-A014                    TCGA-AG-A015 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-A016                    TCGA-AG-A01J 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-A01L                    TCGA-AG-A01N 
  "DEL PEAK  9(4Q35.1) MUTATED" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-A01W                    TCGA-AG-A01Y 
  "DEL PEAK  9(4Q35.1) MUTATED"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-AG-A020                    TCGA-AG-A023 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-A025                    TCGA-AG-A026 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-A02G                    TCGA-AG-A02N 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-A02X                    TCGA-AG-A032 
  "DEL PEAK  9(4Q35.1) MUTATED" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AH-6544                    TCGA-AH-6547 
  "DEL PEAK  9(4Q35.1) MUTATED" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AH-6643                    TCGA-AH-6644 
  "DEL PEAK  9(4Q35.1) MUTATED" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AH-6897                    TCGA-AH-6903 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-BM-6198                    TCGA-CI-6619 
  "DEL PEAK  9(4Q35.1) MUTATED"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-CI-6620                    TCGA-CI-6622 
  "DEL PEAK  9(4Q35.1) MUTATED" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-CI-6623                    TCGA-CI-6624 
"DEL PEAK  9(4Q35.1) WILD-TYPE"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-CL-4957                    TCGA-CL-5917 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-CL-5918                    TCGA-DC-4745 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-DC-4749                    TCGA-DC-5337 
  "DEL PEAK  9(4Q35.1) MUTATED" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-DC-5869                    TCGA-DC-6154 
  "DEL PEAK  9(4Q35.1) MUTATED" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-DC-6155                    TCGA-DC-6156 
"DEL PEAK  9(4Q35.1) WILD-TYPE"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-DC-6157                    TCGA-DC-6158 
  "DEL PEAK  9(4Q35.1) MUTATED"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-DC-6160                    TCGA-DC-6681 
  "DEL PEAK  9(4Q35.1) MUTATED" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-DC-6682                    TCGA-DC-6683 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-DT-5265                    TCGA-DY-A0XA 
"DEL PEAK  9(4Q35.1) WILD-TYPE"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-DY-A1DC                    TCGA-DY-A1DD 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-DY-A1DE                    TCGA-DY-A1DF 
  "DEL PEAK  9(4Q35.1) MUTATED"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-DY-A1DG                    TCGA-DY-A1H8 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-EF-5830                    TCGA-EF-5831 
"DEL PEAK  9(4Q35.1) WILD-TYPE"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-EI-6506                    TCGA-EI-6507 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-EI-6508                    TCGA-EI-6509 
"DEL PEAK  9(4Q35.1) WILD-TYPE"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-EI-6510                    TCGA-EI-6511 
"DEL PEAK  9(4Q35.1) WILD-TYPE"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-EI-6512                    TCGA-EI-6513 
"DEL PEAK  9(4Q35.1) WILD-TYPE"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-EI-6514                    TCGA-EI-6881 
"DEL PEAK  9(4Q35.1) WILD-TYPE"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-EI-6882                    TCGA-EI-6883 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-EI-6884                    TCGA-EI-6885 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-EI-6917                    TCGA-EI-7002 
"DEL PEAK  9(4Q35.1) WILD-TYPE"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-EI-7004                    TCGA-F5-6465 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-F5-6571                    TCGA-F5-6702 
  "DEL PEAK  9(4Q35.1) MUTATED"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-F5-6810                    TCGA-F5-6811 
  "DEL PEAK  9(4Q35.1) MUTATED"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-F5-6812                    TCGA-F5-6813 
  "DEL PEAK  9(4Q35.1) MUTATED" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-F5-6814                    TCGA-F5-6861 
  "DEL PEAK  9(4Q35.1) MUTATED" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-F5-6863                    TCGA-F5-6864 
"DEL PEAK  9(4Q35.1) WILD-TYPE"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-G5-6233                    TCGA-G5-6235 
  "DEL PEAK  9(4Q35.1) MUTATED" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-G5-6572                    TCGA-G5-6641 
"DEL PEAK  9(4Q35.1) WILD-TYPE"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-AF-2687                    TCGA-AF-2689 
  "DEL PEAK  9(4Q35.1) MUTATED" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
  "DEL PEAK  9(4Q35.1) MUTATED"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-AF-2692                    TCGA-AF-2693 
  "DEL PEAK  9(4Q35.1) MUTATED"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-AF-3400                    TCGA-AF-3911 
  "DEL PEAK  9(4Q35.1) MUTATED"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-AF-3913                    TCGA-AF-4110 
  "DEL PEAK  9(4Q35.1) MUTATED"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"DEL PEAK  9(4Q35.1) WILD-TYPE"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-3575                    TCGA-AG-3581 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-3582                    TCGA-AG-3583 
  "DEL PEAK  9(4Q35.1) MUTATED" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-3586                    TCGA-AG-3587 
"DEL PEAK  9(4Q35.1) WILD-TYPE"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-AG-3599                    TCGA-AG-3605 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-3726                    TCGA-AG-3727 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-3731                    TCGA-AG-3742 
"DEL PEAK  9(4Q35.1) WILD-TYPE"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-AG-3878                    TCGA-AG-3883 
"DEL PEAK  9(4Q35.1) WILD-TYPE"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-3896                    TCGA-AG-3999 
"DEL PEAK  9(4Q35.1) WILD-TYPE"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-AG-4001                    TCGA-AG-4007 
  "DEL PEAK  9(4Q35.1) MUTATED" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-4008                    TCGA-AG-4022 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-A002                    TCGA-AG-A008 
"DEL PEAK  9(4Q35.1) WILD-TYPE"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-AG-A00C                    TCGA-AG-A00H 
"DEL PEAK  9(4Q35.1) WILD-TYPE"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-AG-A00Y                    TCGA-AG-A011 
  "DEL PEAK  9(4Q35.1) MUTATED" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-A014                    TCGA-AG-A015 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-A016                    TCGA-AG-A01J 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-A01L                    TCGA-AG-A01N 
  "DEL PEAK  9(4Q35.1) MUTATED" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-A01W                    TCGA-AG-A01Y 
  "DEL PEAK  9(4Q35.1) MUTATED"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-AG-A020                    TCGA-AG-A023 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-A025                    TCGA-AG-A026 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-A02G                    TCGA-AG-A02N 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-A02X                    TCGA-AG-A032 
  "DEL PEAK  9(4Q35.1) MUTATED" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AH-6544                    TCGA-AH-6547 
  "DEL PEAK  9(4Q35.1) MUTATED" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AH-6643                    TCGA-AH-6644 
  "DEL PEAK  9(4Q35.1) MUTATED" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AH-6897                    TCGA-AH-6903 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-BM-6198                    TCGA-CI-6619 
  "DEL PEAK  9(4Q35.1) MUTATED"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-CI-6620                    TCGA-CI-6622 
  "DEL PEAK  9(4Q35.1) MUTATED" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-CI-6623                    TCGA-CI-6624 
"DEL PEAK  9(4Q35.1) WILD-TYPE"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-CL-4957                    TCGA-CL-5917 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-CL-5918                    TCGA-DC-4745 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-DC-4749                    TCGA-DC-5337 
  "DEL PEAK  9(4Q35.1) MUTATED" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-DC-5869                    TCGA-DC-6154 
  "DEL PEAK  9(4Q35.1) MUTATED" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-DC-6155                    TCGA-DC-6156 
"DEL PEAK  9(4Q35.1) WILD-TYPE"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-DC-6157                    TCGA-DC-6158 
  "DEL PEAK  9(4Q35.1) MUTATED"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-DC-6160                    TCGA-DC-6681 
  "DEL PEAK  9(4Q35.1) MUTATED" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-DC-6682                    TCGA-DC-6683 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-DT-5265                    TCGA-DY-A0XA 
"DEL PEAK  9(4Q35.1) WILD-TYPE"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-DY-A1DC                    TCGA-DY-A1DD 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-DY-A1DE                    TCGA-DY-A1DF 
  "DEL PEAK  9(4Q35.1) MUTATED"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-DY-A1DG                    TCGA-DY-A1H8 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-EF-5830                    TCGA-EF-5831 
"DEL PEAK  9(4Q35.1) WILD-TYPE"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-EI-6506                    TCGA-EI-6507 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-EI-6508                    TCGA-EI-6509 
"DEL PEAK  9(4Q35.1) WILD-TYPE"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-EI-6510                    TCGA-EI-6511 
"DEL PEAK  9(4Q35.1) WILD-TYPE"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-EI-6512                    TCGA-EI-6513 
"DEL PEAK  9(4Q35.1) WILD-TYPE"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-EI-6514                    TCGA-EI-6881 
"DEL PEAK  9(4Q35.1) WILD-TYPE"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-EI-6882                    TCGA-EI-6883 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-EI-6884                    TCGA-EI-6885 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-EI-6917                    TCGA-EI-7002 
"DEL PEAK  9(4Q35.1) WILD-TYPE"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-EI-7004                    TCGA-F5-6465 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-F5-6571                    TCGA-F5-6702 
  "DEL PEAK  9(4Q35.1) MUTATED"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-F5-6810                    TCGA-F5-6811 
  "DEL PEAK  9(4Q35.1) MUTATED"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-F5-6812                    TCGA-F5-6813 
  "DEL PEAK  9(4Q35.1) MUTATED" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-F5-6814                    TCGA-F5-6861 
  "DEL PEAK  9(4Q35.1) MUTATED" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-F5-6863                    TCGA-F5-6864 
"DEL PEAK  9(4Q35.1) WILD-TYPE"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-G5-6233                    TCGA-G5-6235 
  "DEL PEAK  9(4Q35.1) MUTATED" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-G5-6572                    TCGA-G5-6641 
"DEL PEAK  9(4Q35.1) WILD-TYPE"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-AF-2687                    TCGA-AF-2689 
  "DEL PEAK  9(4Q35.1) MUTATED" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
  "DEL PEAK  9(4Q35.1) MUTATED"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-AF-2692                    TCGA-AF-2693 
  "DEL PEAK  9(4Q35.1) MUTATED"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-AF-3400                    TCGA-AF-3911 
  "DEL PEAK  9(4Q35.1) MUTATED"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-AF-3913                    TCGA-AF-4110 
  "DEL PEAK  9(4Q35.1) MUTATED"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"DEL PEAK  9(4Q35.1) WILD-TYPE"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-3575                    TCGA-AG-3581 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-3582                    TCGA-AG-3583 
  "DEL PEAK  9(4Q35.1) MUTATED" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-3586                    TCGA-AG-3587 
"DEL PEAK  9(4Q35.1) WILD-TYPE"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-AG-3599                    TCGA-AG-3605 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-3726                    TCGA-AG-3727 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-3731                    TCGA-AG-3742 
"DEL PEAK  9(4Q35.1) WILD-TYPE"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-AG-3878                    TCGA-AG-3883 
"DEL PEAK  9(4Q35.1) WILD-TYPE"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-3896                    TCGA-AG-3999 
"DEL PEAK  9(4Q35.1) WILD-TYPE"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-AG-4001                    TCGA-AG-4007 
  "DEL PEAK  9(4Q35.1) MUTATED" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-4008                    TCGA-AG-4022 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-A002                    TCGA-AG-A008 
"DEL PEAK  9(4Q35.1) WILD-TYPE"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-AG-A00C                    TCGA-AG-A00H 
"DEL PEAK  9(4Q35.1) WILD-TYPE"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-AG-A00Y                    TCGA-AG-A011 
  "DEL PEAK  9(4Q35.1) MUTATED" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-A014                    TCGA-AG-A015 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-A016                    TCGA-AG-A01J 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-A01L                    TCGA-AG-A01N 
  "DEL PEAK  9(4Q35.1) MUTATED" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-A01W                    TCGA-AG-A01Y 
  "DEL PEAK  9(4Q35.1) MUTATED"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-AG-A020                    TCGA-AG-A023 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-A025                    TCGA-AG-A026 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-A02G                    TCGA-AG-A02N 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-A02X                    TCGA-AG-A032 
  "DEL PEAK  9(4Q35.1) MUTATED" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AH-6544                    TCGA-AH-6547 
  "DEL PEAK  9(4Q35.1) MUTATED" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AH-6643                    TCGA-AH-6644 
  "DEL PEAK  9(4Q35.1) MUTATED" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AH-6897                    TCGA-AH-6903 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-BM-6198                    TCGA-CI-6619 
  "DEL PEAK  9(4Q35.1) MUTATED"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-CI-6620                    TCGA-CI-6622 
  "DEL PEAK  9(4Q35.1) MUTATED" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-CI-6623                    TCGA-CI-6624 
"DEL PEAK  9(4Q35.1) WILD-TYPE"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-CL-4957                    TCGA-CL-5917 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-CL-5918                    TCGA-DC-4745 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-DC-4749                    TCGA-DC-5337 
  "DEL PEAK  9(4Q35.1) MUTATED" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-DC-5869                    TCGA-DC-6154 
  "DEL PEAK  9(4Q35.1) MUTATED" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-DC-6155                    TCGA-DC-6156 
"DEL PEAK  9(4Q35.1) WILD-TYPE"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-DC-6157                    TCGA-DC-6158 
  "DEL PEAK  9(4Q35.1) MUTATED"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-DC-6160                    TCGA-DC-6681 
  "DEL PEAK  9(4Q35.1) MUTATED" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-DC-6682                    TCGA-DC-6683 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-DT-5265                    TCGA-DY-A0XA 
"DEL PEAK  9(4Q35.1) WILD-TYPE"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-DY-A1DC                    TCGA-DY-A1DD 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-DY-A1DE                    TCGA-DY-A1DF 
  "DEL PEAK  9(4Q35.1) MUTATED"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-DY-A1DG                    TCGA-DY-A1H8 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-EF-5830                    TCGA-EF-5831 
"DEL PEAK  9(4Q35.1) WILD-TYPE"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-EI-6506                    TCGA-EI-6507 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-EI-6508                    TCGA-EI-6509 
"DEL PEAK  9(4Q35.1) WILD-TYPE"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-EI-6510                    TCGA-EI-6511 
"DEL PEAK  9(4Q35.1) WILD-TYPE"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-EI-6512                    TCGA-EI-6513 
"DEL PEAK  9(4Q35.1) WILD-TYPE"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-EI-6514                    TCGA-EI-6881 
"DEL PEAK  9(4Q35.1) WILD-TYPE"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-EI-6882                    TCGA-EI-6883 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-EI-6884                    TCGA-EI-6885 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-EI-6917                    TCGA-EI-7002 
"DEL PEAK  9(4Q35.1) WILD-TYPE"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-EI-7004                    TCGA-F5-6465 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-F5-6571                    TCGA-F5-6702 
  "DEL PEAK  9(4Q35.1) MUTATED"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-F5-6810                    TCGA-F5-6811 
  "DEL PEAK  9(4Q35.1) MUTATED"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-F5-6812                    TCGA-F5-6813 
  "DEL PEAK  9(4Q35.1) MUTATED" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-F5-6814                    TCGA-F5-6861 
  "DEL PEAK  9(4Q35.1) MUTATED" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-F5-6863                    TCGA-F5-6864 
"DEL PEAK  9(4Q35.1) WILD-TYPE"   "DEL PEAK  9(4Q35.1) MUTATED" 
                   TCGA-G5-6233                    TCGA-G5-6235 
  "DEL PEAK  9(4Q35.1) MUTATED" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-G5-6572                    TCGA-G5-6641 
"DEL PEAK  9(4Q35.1) WILD-TYPE"   "DEL PEAK  9(4Q35.1) MUTATED" 
[1] "hr=" "1.2"
D34V2, continuous
                               vv
clus                            STAGE I STAGE II STAGE IIA STAGE IIB STAGE IIC
  DEL PEAK  9(4Q35.1) MUTATED        13        2        19         0         1
  DEL PEAK  9(4Q35.1) WILD-TYPE      17        6        19         2         1
                               vv
clus                            STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  DEL PEAK  9(4Q35.1) MUTATED           2          2         11         10
  DEL PEAK  9(4Q35.1) WILD-TYPE         3          7         12          4
                               vv
clus                            STAGE IV STAGE IVA
  DEL PEAK  9(4Q35.1) MUTATED          5         4
  DEL PEAK  9(4Q35.1) WILD-TYPE       12         5
D34V3, multiclass
                               vv
clus                            T1 T2 T3 T4
  DEL PEAK  9(4Q35.1) MUTATED    3 12 52  4
  DEL PEAK  9(4Q35.1) WILD-TYPE  6 17 57 10
D34V4, multiclass
    clus
vv   DEL PEAK  9(4Q35.1) MUTATED DEL PEAK  9(4Q35.1) WILD-TYPE
  T1                           3                             6
  T2                          12                            17
  T3                          52                            57
  T4                           4                            10
                               vv
clus                            N0 N1 N2
  DEL PEAK  9(4Q35.1) MUTATED   34 20 17
  DEL PEAK  9(4Q35.1) WILD-TYPE 49 25 15
D34V5, multiclass
    clus
vv   DEL PEAK  9(4Q35.1) MUTATED DEL PEAK  9(4Q35.1) WILD-TYPE
  N0                          34                            49
  N1                          20                            25
  N2                          17                            15
                               vv
clus                            M0 M1 M1A MX
  DEL PEAK  9(4Q35.1) MUTATED   54  9   1  6
  DEL PEAK  9(4Q35.1) WILD-TYPE 69 13   1  7
D34V6, multiclass
     clus
vv    DEL PEAK  9(4Q35.1) MUTATED DEL PEAK  9(4Q35.1) WILD-TYPE
  M0                           54                            69
  M1                            9                            13
  M1A                           1                             1
  MX                            6                             7
D34V7, binary
                               cls
clus                             0  1
  DEL PEAK  9(4Q35.1) MUTATED   29 42
  DEL PEAK  9(4Q35.1) WILD-TYPE 45 46
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  9(4Q35.1) MUTATED     29   42
  DEL PEAK  9(4Q35.1) WILD-TYPE   45   46
        clus
vv       DEL PEAK  9(4Q35.1) MUTATED DEL PEAK  9(4Q35.1) WILD-TYPE
  FEMALE                          29                            45
  MALE                            42                            46
D34V8, binary
                               cls
clus                             0  1
  DEL PEAK  9(4Q35.1) MUTATED   64  3
  DEL PEAK  9(4Q35.1) WILD-TYPE 79 10
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  9(4Q35.1) MUTATED     64    3
  DEL PEAK  9(4Q35.1) WILD-TYPE   79   10
                                clus
vv                               DEL PEAK  9(4Q35.1) MUTATED
  RECTAL ADENOCARCINOMA                                   64
  RECTAL MUCINOUS ADENOCARCINOMA                           3
                                clus
vv                               DEL PEAK  9(4Q35.1) WILD-TYPE
  RECTAL ADENOCARCINOMA                                     79
  RECTAL MUCINOUS ADENOCARCINOMA                            10
D34V9, binary
                               cls
clus                             0  1
  DEL PEAK  9(4Q35.1) MUTATED    5 66
  DEL PEAK  9(4Q35.1) WILD-TYPE  1 90
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  9(4Q35.1) MUTATED      5   66
  DEL PEAK  9(4Q35.1) WILD-TYPE    1   90
     clus
vv    DEL PEAK  9(4Q35.1) MUTATED DEL PEAK  9(4Q35.1) WILD-TYPE
  NO                            5                             1
  YES                          66                            90
                               vv
clus                            R0 R1 R2 RX
  DEL PEAK  9(4Q35.1) MUTATED   55  0  3  0
  DEL PEAK  9(4Q35.1) WILD-TYPE 66  2  9  3
D34V10, multiclass
    clus
vv   DEL PEAK  9(4Q35.1) MUTATED DEL PEAK  9(4Q35.1) WILD-TYPE
  R0                          55                            66
  R1                           0                             2
  R2                           3                             9
  RX                           0                             3
D34V11, continuous

Clustering(35) Variable = DEL PEAK 10(5Q11.2) MUTATION ANALYSIS
D35V1, survival
                               sevent
clus2                            0  1
  DEL PEAK 10(5Q11.2) MUTATED   32  8
  DEL PEAK 10(5Q11.2) WILD-TYPE 85  5
  DEL PEAK 10(5Q11.2) MUTATED DEL PEAK 10(5Q11.2) WILD-TYPE 
                           40                            90 
  DEL PEAK 10(5Q11.2) MUTATED DEL PEAK 10(5Q11.2) WILD-TYPE 
                            8                             5 
$`DEL PEAK 10(5Q11.2) MUTATED`
TCGA-AF-2687 TCGA-AF-2690 TCGA-AF-2691 TCGA-AF-3911 TCGA-AF-3913 TCGA-AF-6136 
       24.13        17.23        10.62        25.02        10.39        15.35 
TCGA-AF-6672 TCGA-AG-3731 TCGA-AG-3896 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4008 
       10.39         1.02         1.02         1.02         1.02         1.02 
TCGA-AG-A00Y TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02X 
       23.01        70.03        63.98         1.94        38.93        40.96 
TCGA-BM-6198 TCGA-CI-6620 TCGA-CL-5918 TCGA-DC-5869 TCGA-DC-6155 TCGA-DC-6156 
       10.19         6.02         7.99        12.99        14.01        15.02 
TCGA-DC-6157 TCGA-DC-6158 TCGA-DY-A0XA TCGA-DY-A1DD TCGA-DY-A1DE TCGA-DY-A1DG 
       36.00         6.97       126.41        57.24       129.27        51.48 
TCGA-EI-6506 TCGA-EI-6881 TCGA-EI-6885 TCGA-EI-7002 TCGA-EI-7004 TCGA-F5-6465 
       20.55        16.37        13.61        11.97         8.45         3.39 
TCGA-F5-6702 TCGA-F5-6811 TCGA-G5-6233 TCGA-G5-6641 
        2.17         1.02        18.25        26.43 

$`DEL PEAK 10(5Q11.2) WILD-TYPE`
TCGA-AF-2689 TCGA-AF-2692 TCGA-AF-2693 TCGA-AF-3400 TCGA-AF-4110 TCGA-AF-5654 
       17.95        13.55        19.10        12.72        14.50         8.45 
TCGA-AF-6655 TCGA-AG-3575 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3586 
       11.67        12.00         1.02         1.02         2.01         1.02 
TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3605 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3742 
        1.02         0.99         0.99         7.96         0.95         0.99 
TCGA-AG-3878 TCGA-AG-3883 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 
        0.99         1.02         0.92         1.02         0.99         0.99 
TCGA-AG-4007 TCGA-AG-4022 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H 
        1.02         0.99        20.94        13.91         6.02        25.94 
TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01J TCGA-AG-A01L 
       17.03        15.91        13.02         1.02         1.02        12.00 
TCGA-AG-A01N TCGA-AG-A020 TCGA-AG-A023 TCGA-AG-A025 TCGA-AG-A02N TCGA-AG-A032 
       12.00        10.98        51.98        49.94        61.94        38.01 
TCGA-AH-6544 TCGA-AH-6547 TCGA-AH-6643 TCGA-AH-6644 TCGA-AH-6897 TCGA-AH-6903 
        0.49         1.45         0.69         0.72         4.60         1.81 
TCGA-CI-6619 TCGA-CI-6622 TCGA-CI-6623 TCGA-CI-6624 TCGA-CL-4957 TCGA-CL-5917 
        6.02         6.94         9.37         4.70        13.97        60.00 
TCGA-DC-4745 TCGA-DC-4749 TCGA-DC-5337 TCGA-DC-6154 TCGA-DC-6160 TCGA-DC-6681 
       10.98        11.01        15.02        12.00        30.05        12.95 
TCGA-DC-6682 TCGA-DC-6683 TCGA-DT-5265 TCGA-DY-A1DC TCGA-DY-A1DF TCGA-DY-A1H8 
       13.02        10.06         5.29        41.33        24.13        32.58 
TCGA-EF-5830 TCGA-EF-5831 TCGA-EI-6507 TCGA-EI-6508 TCGA-EI-6509 TCGA-EI-6510 
        0.49         2.40        19.96        20.91        17.00        18.28 
TCGA-EI-6511 TCGA-EI-6512 TCGA-EI-6513 TCGA-EI-6514 TCGA-EI-6882 TCGA-EI-6883 
       15.85        17.69        16.34        16.31         8.61        11.51 
TCGA-EI-6884 TCGA-EI-6917 TCGA-F5-6571 TCGA-F5-6810 TCGA-F5-6812 TCGA-F5-6813 
       10.78        17.46         0.85         0.39         0.66         0.69 
TCGA-F5-6814 TCGA-F5-6861 TCGA-F5-6863 TCGA-F5-6864 TCGA-G5-6235 TCGA-G5-6572 
        0.53         1.08         0.76         0.46        55.76        47.08 

  DEL PEAK 10(5Q11.2) MUTATED DEL PEAK 10(5Q11.2) WILD-TYPE 
                         1.02                          0.39 
  DEL PEAK 10(5Q11.2) MUTATED DEL PEAK 10(5Q11.2) WILD-TYPE 
                       129.27                         61.94 
  DEL PEAK 10(5Q11.2) MUTATED DEL PEAK 10(5Q11.2) WILD-TYPE 
                        13.81                         10.42 
[1] "1.0 - 129.3 (13.8)" "0.4 - 61.9 (10.4)" 
                   TCGA-AF-2687                    TCGA-AF-2689 
  "DEL PEAK 10(5Q11.2) MUTATED" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
  "DEL PEAK 10(5Q11.2) MUTATED"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-AF-2692                    TCGA-AF-2693 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AF-3400                    TCGA-AF-3911 
"DEL PEAK 10(5Q11.2) WILD-TYPE"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-AF-3913                    TCGA-AF-4110 
  "DEL PEAK 10(5Q11.2) MUTATED" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"DEL PEAK 10(5Q11.2) WILD-TYPE"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"DEL PEAK 10(5Q11.2) WILD-TYPE"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-AG-3575                    TCGA-AG-3581 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-3582                    TCGA-AG-3583 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-3586                    TCGA-AG-3587 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-3599                    TCGA-AG-3605 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-3726                    TCGA-AG-3727 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-3731                    TCGA-AG-3742 
  "DEL PEAK 10(5Q11.2) MUTATED" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-3878                    TCGA-AG-3883 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-3896                    TCGA-AG-3999 
  "DEL PEAK 10(5Q11.2) MUTATED"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-AG-4001                    TCGA-AG-4007 
  "DEL PEAK 10(5Q11.2) MUTATED" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-4008                    TCGA-AG-4022 
  "DEL PEAK 10(5Q11.2) MUTATED" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-A002                    TCGA-AG-A008 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-A00C                    TCGA-AG-A00H 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-A00Y                    TCGA-AG-A011 
  "DEL PEAK 10(5Q11.2) MUTATED" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-A014                    TCGA-AG-A015 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-A016                    TCGA-AG-A01J 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-A01L                    TCGA-AG-A01N 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-A01W                    TCGA-AG-A01Y 
  "DEL PEAK 10(5Q11.2) MUTATED"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-AG-A020                    TCGA-AG-A023 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-A025                    TCGA-AG-A026 
"DEL PEAK 10(5Q11.2) WILD-TYPE"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-AG-A02G                    TCGA-AG-A02N 
  "DEL PEAK 10(5Q11.2) MUTATED" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-A02X                    TCGA-AG-A032 
  "DEL PEAK 10(5Q11.2) MUTATED" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AH-6544                    TCGA-AH-6547 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AH-6643                    TCGA-AH-6644 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AH-6897                    TCGA-AH-6903 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-BM-6198                    TCGA-CI-6619 
  "DEL PEAK 10(5Q11.2) MUTATED" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-CI-6620                    TCGA-CI-6622 
  "DEL PEAK 10(5Q11.2) MUTATED" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-CI-6623                    TCGA-CI-6624 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-CL-4957                    TCGA-CL-5917 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-CL-5918                    TCGA-DC-4745 
  "DEL PEAK 10(5Q11.2) MUTATED" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-DC-4749                    TCGA-DC-5337 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-DC-5869                    TCGA-DC-6154 
  "DEL PEAK 10(5Q11.2) MUTATED" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-DC-6155                    TCGA-DC-6156 
  "DEL PEAK 10(5Q11.2) MUTATED"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-DC-6157                    TCGA-DC-6158 
  "DEL PEAK 10(5Q11.2) MUTATED"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-DC-6160                    TCGA-DC-6681 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-DC-6682                    TCGA-DC-6683 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-DT-5265                    TCGA-DY-A0XA 
"DEL PEAK 10(5Q11.2) WILD-TYPE"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-DY-A1DC                    TCGA-DY-A1DD 
"DEL PEAK 10(5Q11.2) WILD-TYPE"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-DY-A1DE                    TCGA-DY-A1DF 
  "DEL PEAK 10(5Q11.2) MUTATED" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-DY-A1DG                    TCGA-DY-A1H8 
  "DEL PEAK 10(5Q11.2) MUTATED" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EF-5830                    TCGA-EF-5831 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EI-6506                    TCGA-EI-6507 
  "DEL PEAK 10(5Q11.2) MUTATED" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EI-6508                    TCGA-EI-6509 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EI-6510                    TCGA-EI-6511 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EI-6512                    TCGA-EI-6513 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EI-6514                    TCGA-EI-6881 
"DEL PEAK 10(5Q11.2) WILD-TYPE"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-EI-6882                    TCGA-EI-6883 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EI-6884                    TCGA-EI-6885 
"DEL PEAK 10(5Q11.2) WILD-TYPE"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-EI-6917                    TCGA-EI-7002 
"DEL PEAK 10(5Q11.2) WILD-TYPE"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-EI-7004                    TCGA-F5-6465 
  "DEL PEAK 10(5Q11.2) MUTATED"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-F5-6571                    TCGA-F5-6702 
"DEL PEAK 10(5Q11.2) WILD-TYPE"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-F5-6810                    TCGA-F5-6811 
"DEL PEAK 10(5Q11.2) WILD-TYPE"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-F5-6812                    TCGA-F5-6813 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-F5-6814                    TCGA-F5-6861 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-F5-6863                    TCGA-F5-6864 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-G5-6233                    TCGA-G5-6235 
  "DEL PEAK 10(5Q11.2) MUTATED" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-G5-6572                    TCGA-G5-6641 
"DEL PEAK 10(5Q11.2) WILD-TYPE"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-AF-2687                    TCGA-AF-2689 
  "DEL PEAK 10(5Q11.2) MUTATED" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
  "DEL PEAK 10(5Q11.2) MUTATED"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-AF-2692                    TCGA-AF-2693 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AF-3400                    TCGA-AF-3911 
"DEL PEAK 10(5Q11.2) WILD-TYPE"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-AF-3913                    TCGA-AF-4110 
  "DEL PEAK 10(5Q11.2) MUTATED" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"DEL PEAK 10(5Q11.2) WILD-TYPE"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"DEL PEAK 10(5Q11.2) WILD-TYPE"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-AG-3575                    TCGA-AG-3581 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-3582                    TCGA-AG-3583 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-3586                    TCGA-AG-3587 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-3599                    TCGA-AG-3605 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-3726                    TCGA-AG-3727 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-3731                    TCGA-AG-3742 
  "DEL PEAK 10(5Q11.2) MUTATED" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-3878                    TCGA-AG-3883 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-3896                    TCGA-AG-3999 
  "DEL PEAK 10(5Q11.2) MUTATED"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-AG-4001                    TCGA-AG-4007 
  "DEL PEAK 10(5Q11.2) MUTATED" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-4008                    TCGA-AG-4022 
  "DEL PEAK 10(5Q11.2) MUTATED" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-A002                    TCGA-AG-A008 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-A00C                    TCGA-AG-A00H 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-A00Y                    TCGA-AG-A011 
  "DEL PEAK 10(5Q11.2) MUTATED" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-A014                    TCGA-AG-A015 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-A016                    TCGA-AG-A01J 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-A01L                    TCGA-AG-A01N 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-A01W                    TCGA-AG-A01Y 
  "DEL PEAK 10(5Q11.2) MUTATED"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-AG-A020                    TCGA-AG-A023 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-A025                    TCGA-AG-A026 
"DEL PEAK 10(5Q11.2) WILD-TYPE"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-AG-A02G                    TCGA-AG-A02N 
  "DEL PEAK 10(5Q11.2) MUTATED" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-A02X                    TCGA-AG-A032 
  "DEL PEAK 10(5Q11.2) MUTATED" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AH-6544                    TCGA-AH-6547 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AH-6643                    TCGA-AH-6644 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AH-6897                    TCGA-AH-6903 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-BM-6198                    TCGA-CI-6619 
  "DEL PEAK 10(5Q11.2) MUTATED" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-CI-6620                    TCGA-CI-6622 
  "DEL PEAK 10(5Q11.2) MUTATED" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-CI-6623                    TCGA-CI-6624 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-CL-4957                    TCGA-CL-5917 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-CL-5918                    TCGA-DC-4745 
  "DEL PEAK 10(5Q11.2) MUTATED" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-DC-4749                    TCGA-DC-5337 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-DC-5869                    TCGA-DC-6154 
  "DEL PEAK 10(5Q11.2) MUTATED" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-DC-6155                    TCGA-DC-6156 
  "DEL PEAK 10(5Q11.2) MUTATED"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-DC-6157                    TCGA-DC-6158 
  "DEL PEAK 10(5Q11.2) MUTATED"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-DC-6160                    TCGA-DC-6681 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-DC-6682                    TCGA-DC-6683 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-DT-5265                    TCGA-DY-A0XA 
"DEL PEAK 10(5Q11.2) WILD-TYPE"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-DY-A1DC                    TCGA-DY-A1DD 
"DEL PEAK 10(5Q11.2) WILD-TYPE"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-DY-A1DE                    TCGA-DY-A1DF 
  "DEL PEAK 10(5Q11.2) MUTATED" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-DY-A1DG                    TCGA-DY-A1H8 
  "DEL PEAK 10(5Q11.2) MUTATED" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EF-5830                    TCGA-EF-5831 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EI-6506                    TCGA-EI-6507 
  "DEL PEAK 10(5Q11.2) MUTATED" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EI-6508                    TCGA-EI-6509 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EI-6510                    TCGA-EI-6511 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EI-6512                    TCGA-EI-6513 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EI-6514                    TCGA-EI-6881 
"DEL PEAK 10(5Q11.2) WILD-TYPE"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-EI-6882                    TCGA-EI-6883 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EI-6884                    TCGA-EI-6885 
"DEL PEAK 10(5Q11.2) WILD-TYPE"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-EI-6917                    TCGA-EI-7002 
"DEL PEAK 10(5Q11.2) WILD-TYPE"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-EI-7004                    TCGA-F5-6465 
  "DEL PEAK 10(5Q11.2) MUTATED"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-F5-6571                    TCGA-F5-6702 
"DEL PEAK 10(5Q11.2) WILD-TYPE"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-F5-6810                    TCGA-F5-6811 
"DEL PEAK 10(5Q11.2) WILD-TYPE"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-F5-6812                    TCGA-F5-6813 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-F5-6814                    TCGA-F5-6861 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-F5-6863                    TCGA-F5-6864 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-G5-6233                    TCGA-G5-6235 
  "DEL PEAK 10(5Q11.2) MUTATED" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-G5-6572                    TCGA-G5-6641 
"DEL PEAK 10(5Q11.2) WILD-TYPE"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-AF-2687                    TCGA-AF-2689 
  "DEL PEAK 10(5Q11.2) MUTATED" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
  "DEL PEAK 10(5Q11.2) MUTATED"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-AF-2692                    TCGA-AF-2693 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AF-3400                    TCGA-AF-3911 
"DEL PEAK 10(5Q11.2) WILD-TYPE"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-AF-3913                    TCGA-AF-4110 
  "DEL PEAK 10(5Q11.2) MUTATED" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"DEL PEAK 10(5Q11.2) WILD-TYPE"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"DEL PEAK 10(5Q11.2) WILD-TYPE"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-AG-3575                    TCGA-AG-3581 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-3582                    TCGA-AG-3583 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-3586                    TCGA-AG-3587 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-3599                    TCGA-AG-3605 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-3726                    TCGA-AG-3727 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-3731                    TCGA-AG-3742 
  "DEL PEAK 10(5Q11.2) MUTATED" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-3878                    TCGA-AG-3883 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-3896                    TCGA-AG-3999 
  "DEL PEAK 10(5Q11.2) MUTATED"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-AG-4001                    TCGA-AG-4007 
  "DEL PEAK 10(5Q11.2) MUTATED" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-4008                    TCGA-AG-4022 
  "DEL PEAK 10(5Q11.2) MUTATED" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-A002                    TCGA-AG-A008 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-A00C                    TCGA-AG-A00H 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-A00Y                    TCGA-AG-A011 
  "DEL PEAK 10(5Q11.2) MUTATED" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-A014                    TCGA-AG-A015 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-A016                    TCGA-AG-A01J 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-A01L                    TCGA-AG-A01N 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-A01W                    TCGA-AG-A01Y 
  "DEL PEAK 10(5Q11.2) MUTATED"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-AG-A020                    TCGA-AG-A023 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-A025                    TCGA-AG-A026 
"DEL PEAK 10(5Q11.2) WILD-TYPE"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-AG-A02G                    TCGA-AG-A02N 
  "DEL PEAK 10(5Q11.2) MUTATED" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-A02X                    TCGA-AG-A032 
  "DEL PEAK 10(5Q11.2) MUTATED" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AH-6544                    TCGA-AH-6547 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AH-6643                    TCGA-AH-6644 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AH-6897                    TCGA-AH-6903 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-BM-6198                    TCGA-CI-6619 
  "DEL PEAK 10(5Q11.2) MUTATED" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-CI-6620                    TCGA-CI-6622 
  "DEL PEAK 10(5Q11.2) MUTATED" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-CI-6623                    TCGA-CI-6624 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-CL-4957                    TCGA-CL-5917 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-CL-5918                    TCGA-DC-4745 
  "DEL PEAK 10(5Q11.2) MUTATED" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-DC-4749                    TCGA-DC-5337 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-DC-5869                    TCGA-DC-6154 
  "DEL PEAK 10(5Q11.2) MUTATED" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-DC-6155                    TCGA-DC-6156 
  "DEL PEAK 10(5Q11.2) MUTATED"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-DC-6157                    TCGA-DC-6158 
  "DEL PEAK 10(5Q11.2) MUTATED"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-DC-6160                    TCGA-DC-6681 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-DC-6682                    TCGA-DC-6683 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-DT-5265                    TCGA-DY-A0XA 
"DEL PEAK 10(5Q11.2) WILD-TYPE"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-DY-A1DC                    TCGA-DY-A1DD 
"DEL PEAK 10(5Q11.2) WILD-TYPE"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-DY-A1DE                    TCGA-DY-A1DF 
  "DEL PEAK 10(5Q11.2) MUTATED" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-DY-A1DG                    TCGA-DY-A1H8 
  "DEL PEAK 10(5Q11.2) MUTATED" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EF-5830                    TCGA-EF-5831 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EI-6506                    TCGA-EI-6507 
  "DEL PEAK 10(5Q11.2) MUTATED" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EI-6508                    TCGA-EI-6509 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EI-6510                    TCGA-EI-6511 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EI-6512                    TCGA-EI-6513 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EI-6514                    TCGA-EI-6881 
"DEL PEAK 10(5Q11.2) WILD-TYPE"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-EI-6882                    TCGA-EI-6883 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EI-6884                    TCGA-EI-6885 
"DEL PEAK 10(5Q11.2) WILD-TYPE"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-EI-6917                    TCGA-EI-7002 
"DEL PEAK 10(5Q11.2) WILD-TYPE"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-EI-7004                    TCGA-F5-6465 
  "DEL PEAK 10(5Q11.2) MUTATED"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-F5-6571                    TCGA-F5-6702 
"DEL PEAK 10(5Q11.2) WILD-TYPE"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-F5-6810                    TCGA-F5-6811 
"DEL PEAK 10(5Q11.2) WILD-TYPE"   "DEL PEAK 10(5Q11.2) MUTATED" 
                   TCGA-F5-6812                    TCGA-F5-6813 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-F5-6814                    TCGA-F5-6861 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-F5-6863                    TCGA-F5-6864 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-G5-6233                    TCGA-G5-6235 
  "DEL PEAK 10(5Q11.2) MUTATED" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-G5-6572                    TCGA-G5-6641 
"DEL PEAK 10(5Q11.2) WILD-TYPE"   "DEL PEAK 10(5Q11.2) MUTATED" 
[1] "hr=" "1.7"
D35V2, continuous
                               vv
clus                            STAGE I STAGE II STAGE IIA STAGE IIB STAGE IIC
  DEL PEAK 10(5Q11.2) MUTATED         8        3        14         0         1
  DEL PEAK 10(5Q11.2) WILD-TYPE      22        5        24         2         1
                               vv
clus                            STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  DEL PEAK 10(5Q11.2) MUTATED           1          3          5          4
  DEL PEAK 10(5Q11.2) WILD-TYPE         4          6         18         10
                               vv
clus                            STAGE IV STAGE IVA
  DEL PEAK 10(5Q11.2) MUTATED          6         5
  DEL PEAK 10(5Q11.2) WILD-TYPE       11         4
D35V3, multiclass
                               vv
clus                            T1 T2 T3 T4
  DEL PEAK 10(5Q11.2) MUTATED    2  9 36  4
  DEL PEAK 10(5Q11.2) WILD-TYPE  7 20 73 10
D35V4, multiclass
    clus
vv   DEL PEAK 10(5Q11.2) MUTATED DEL PEAK 10(5Q11.2) WILD-TYPE
  T1                           2                             7
  T2                           9                            20
  T3                          36                            73
  T4                           4                            10
                               vv
clus                            N0 N1 N2
  DEL PEAK 10(5Q11.2) MUTATED   25 15 11
  DEL PEAK 10(5Q11.2) WILD-TYPE 58 30 21
D35V5, multiclass
    clus
vv   DEL PEAK 10(5Q11.2) MUTATED DEL PEAK 10(5Q11.2) WILD-TYPE
  N0                          25                            58
  N1                          15                            30
  N2                          11                            21
                               vv
clus                            M0 M1 M1A MX
  DEL PEAK 10(5Q11.2) MUTATED   35  9   1  5
  DEL PEAK 10(5Q11.2) WILD-TYPE 88 13   1  8
D35V6, multiclass
     clus
vv    DEL PEAK 10(5Q11.2) MUTATED DEL PEAK 10(5Q11.2) WILD-TYPE
  M0                           35                            88
  M1                            9                            13
  M1A                           1                             1
  MX                            5                             8
D35V7, binary
                               cls
clus                             0  1
  DEL PEAK 10(5Q11.2) MUTATED   27 24
  DEL PEAK 10(5Q11.2) WILD-TYPE 47 64
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 10(5Q11.2) MUTATED     27   24
  DEL PEAK 10(5Q11.2) WILD-TYPE   47   64
        clus
vv       DEL PEAK 10(5Q11.2) MUTATED DEL PEAK 10(5Q11.2) WILD-TYPE
  FEMALE                          27                            47
  MALE                            24                            64
D35V8, binary
                               cls
clus                             0  1
  DEL PEAK 10(5Q11.2) MUTATED   48  2
  DEL PEAK 10(5Q11.2) WILD-TYPE 95 11
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 10(5Q11.2) MUTATED     48    2
  DEL PEAK 10(5Q11.2) WILD-TYPE   95   11
                                clus
vv                               DEL PEAK 10(5Q11.2) MUTATED
  RECTAL ADENOCARCINOMA                                   48
  RECTAL MUCINOUS ADENOCARCINOMA                           2
                                clus
vv                               DEL PEAK 10(5Q11.2) WILD-TYPE
  RECTAL ADENOCARCINOMA                                     95
  RECTAL MUCINOUS ADENOCARCINOMA                            11
D35V9, binary
                               cls
clus                              0   1
  DEL PEAK 10(5Q11.2) MUTATED     5  46
  DEL PEAK 10(5Q11.2) WILD-TYPE   1 110
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 10(5Q11.2) MUTATED      5   46
  DEL PEAK 10(5Q11.2) WILD-TYPE    1  110
     clus
vv    DEL PEAK 10(5Q11.2) MUTATED DEL PEAK 10(5Q11.2) WILD-TYPE
  NO                            5                             1
  YES                          46                           110
                               vv
clus                            R0 R1 R2 RX
  DEL PEAK 10(5Q11.2) MUTATED   36  1  3  1
  DEL PEAK 10(5Q11.2) WILD-TYPE 85  1  9  2
D35V10, multiclass
    clus
vv   DEL PEAK 10(5Q11.2) MUTATED DEL PEAK 10(5Q11.2) WILD-TYPE
  R0                          36                            85
  R1                           1                             1
  R2                           3                             9
  RX                           1                             2
D35V11, continuous

Clustering(36) Variable = DEL PEAK 11(5Q22.2) MUTATION ANALYSIS
D36V1, survival
                               sevent
clus2                            0  1
  DEL PEAK 11(5Q22.2) MUTATED   33  9
  DEL PEAK 11(5Q22.2) WILD-TYPE 84  4
  DEL PEAK 11(5Q22.2) MUTATED DEL PEAK 11(5Q22.2) WILD-TYPE 
                           42                            88 
  DEL PEAK 11(5Q22.2) MUTATED DEL PEAK 11(5Q22.2) WILD-TYPE 
                            9                             4 
$`DEL PEAK 11(5Q22.2) MUTATED`
TCGA-AF-2687 TCGA-AF-2690 TCGA-AF-2691 TCGA-AF-3911 TCGA-AF-3913 TCGA-AF-6136 
       24.13        17.23        10.62        25.02        10.39        15.35 
TCGA-AF-6672 TCGA-AG-3731 TCGA-AG-3896 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4008 
       10.39         1.02         1.02         1.02         1.02         1.02 
TCGA-AG-A00C TCGA-AG-A00Y TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A026 
        6.02        23.01        12.00        70.03        63.98         1.94 
TCGA-AG-A02G TCGA-AG-A02X TCGA-AH-6903 TCGA-BM-6198 TCGA-CI-6620 TCGA-CL-5918 
       38.93        40.96         1.81        10.19         6.02         7.99 
TCGA-DC-5869 TCGA-DC-6155 TCGA-DC-6156 TCGA-DC-6157 TCGA-DC-6158 TCGA-DC-6682 
       12.99        14.01        15.02        36.00         6.97        13.02 
TCGA-DY-A0XA TCGA-DY-A1DC TCGA-DY-A1DD TCGA-DY-A1DG TCGA-EI-6506 TCGA-EI-6507 
      126.41        41.33        57.24        51.48        20.55        19.96 
TCGA-EI-6510 TCGA-EI-6513 TCGA-EI-6881 TCGA-F5-6702 TCGA-F5-6864 TCGA-G5-6233 
       18.28        16.34        16.37         2.17         0.46        18.25 

$`DEL PEAK 11(5Q22.2) WILD-TYPE`
TCGA-AF-2689 TCGA-AF-2692 TCGA-AF-2693 TCGA-AF-3400 TCGA-AF-4110 TCGA-AF-5654 
       17.95        13.55        19.10        12.72        14.50         8.45 
TCGA-AF-6655 TCGA-AG-3575 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3586 
       11.67        12.00         1.02         1.02         2.01         1.02 
TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3605 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3742 
        1.02         0.99         0.99         7.96         0.95         0.99 
TCGA-AG-3878 TCGA-AG-3883 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 
        0.99         1.02         0.92         1.02         0.99         0.99 
TCGA-AG-4007 TCGA-AG-4022 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00H TCGA-AG-A011 
        1.02         0.99        20.94        13.91        25.94        17.03 
TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01J TCGA-AG-A01N TCGA-AG-A020 
       15.91        13.02         1.02         1.02        12.00        10.98 
TCGA-AG-A023 TCGA-AG-A025 TCGA-AG-A02N TCGA-AG-A032 TCGA-AH-6544 TCGA-AH-6547 
       51.98        49.94        61.94        38.01         0.49         1.45 
TCGA-AH-6643 TCGA-AH-6644 TCGA-AH-6897 TCGA-CI-6619 TCGA-CI-6622 TCGA-CI-6623 
        0.69         0.72         4.60         6.02         6.94         9.37 
TCGA-CI-6624 TCGA-CL-4957 TCGA-CL-5917 TCGA-DC-4745 TCGA-DC-4749 TCGA-DC-5337 
        4.70        13.97        60.00        10.98        11.01        15.02 
TCGA-DC-6154 TCGA-DC-6160 TCGA-DC-6681 TCGA-DC-6683 TCGA-DT-5265 TCGA-DY-A1DE 
       12.00        30.05        12.95        10.06         5.29       129.27 
TCGA-DY-A1DF TCGA-DY-A1H8 TCGA-EF-5830 TCGA-EF-5831 TCGA-EI-6508 TCGA-EI-6509 
       24.13        32.58         0.49         2.40        20.91        17.00 
TCGA-EI-6511 TCGA-EI-6512 TCGA-EI-6514 TCGA-EI-6882 TCGA-EI-6883 TCGA-EI-6884 
       15.85        17.69        16.31         8.61        11.51        10.78 
TCGA-EI-6885 TCGA-EI-6917 TCGA-EI-7002 TCGA-EI-7004 TCGA-F5-6465 TCGA-F5-6571 
       13.61        17.46        11.97         8.45         3.39         0.85 
TCGA-F5-6810 TCGA-F5-6811 TCGA-F5-6812 TCGA-F5-6813 TCGA-F5-6814 TCGA-F5-6861 
        0.39         1.02         0.66         0.69         0.53         1.08 
TCGA-F5-6863 TCGA-G5-6235 TCGA-G5-6572 TCGA-G5-6641 
        0.76        55.76        47.08        26.43 

  DEL PEAK 11(5Q22.2) MUTATED DEL PEAK 11(5Q22.2) WILD-TYPE 
                         0.46                          0.39 
  DEL PEAK 11(5Q22.2) MUTATED DEL PEAK 11(5Q22.2) WILD-TYPE 
                       126.41                        129.27 
  DEL PEAK 11(5Q22.2) MUTATED DEL PEAK 11(5Q22.2) WILD-TYPE 
                       14.515                         9.715 
[1] "0.5 - 126.4 (14.5)" "0.4 - 129.3 (9.7)" 
                   TCGA-AF-2687                    TCGA-AF-2689 
  "DEL PEAK 11(5Q22.2) MUTATED" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
  "DEL PEAK 11(5Q22.2) MUTATED"   "DEL PEAK 11(5Q22.2) MUTATED" 
                   TCGA-AF-2692                    TCGA-AF-2693 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AF-3400                    TCGA-AF-3911 
"DEL PEAK 11(5Q22.2) WILD-TYPE"   "DEL PEAK 11(5Q22.2) MUTATED" 
                   TCGA-AF-3913                    TCGA-AF-4110 
  "DEL PEAK 11(5Q22.2) MUTATED" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"DEL PEAK 11(5Q22.2) WILD-TYPE"   "DEL PEAK 11(5Q22.2) MUTATED" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"DEL PEAK 11(5Q22.2) WILD-TYPE"   "DEL PEAK 11(5Q22.2) MUTATED" 
                   TCGA-AG-3575                    TCGA-AG-3581 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-3582                    TCGA-AG-3583 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-3586                    TCGA-AG-3587 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-3599                    TCGA-AG-3605 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-3726                    TCGA-AG-3727 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-3731                    TCGA-AG-3742 
  "DEL PEAK 11(5Q22.2) MUTATED" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-3878                    TCGA-AG-3883 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-3896                    TCGA-AG-3999 
  "DEL PEAK 11(5Q22.2) MUTATED"   "DEL PEAK 11(5Q22.2) MUTATED" 
                   TCGA-AG-4001                    TCGA-AG-4007 
  "DEL PEAK 11(5Q22.2) MUTATED" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-4008                    TCGA-AG-4022 
  "DEL PEAK 11(5Q22.2) MUTATED" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-A002                    TCGA-AG-A008 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-A00C                    TCGA-AG-A00H 
  "DEL PEAK 11(5Q22.2) MUTATED" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-A00Y                    TCGA-AG-A011 
  "DEL PEAK 11(5Q22.2) MUTATED" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-A014                    TCGA-AG-A015 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-A016                    TCGA-AG-A01J 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-A01L                    TCGA-AG-A01N 
  "DEL PEAK 11(5Q22.2) MUTATED" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-A01W                    TCGA-AG-A01Y 
  "DEL PEAK 11(5Q22.2) MUTATED"   "DEL PEAK 11(5Q22.2) MUTATED" 
                   TCGA-AG-A020                    TCGA-AG-A023 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-A025                    TCGA-AG-A026 
"DEL PEAK 11(5Q22.2) WILD-TYPE"   "DEL PEAK 11(5Q22.2) MUTATED" 
                   TCGA-AG-A02G                    TCGA-AG-A02N 
  "DEL PEAK 11(5Q22.2) MUTATED" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-A02X                    TCGA-AG-A032 
  "DEL PEAK 11(5Q22.2) MUTATED" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AH-6544                    TCGA-AH-6547 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AH-6643                    TCGA-AH-6644 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AH-6897                    TCGA-AH-6903 
"DEL PEAK 11(5Q22.2) WILD-TYPE"   "DEL PEAK 11(5Q22.2) MUTATED" 
                   TCGA-BM-6198                    TCGA-CI-6619 
  "DEL PEAK 11(5Q22.2) MUTATED" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-CI-6620                    TCGA-CI-6622 
  "DEL PEAK 11(5Q22.2) MUTATED" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-CI-6623                    TCGA-CI-6624 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-CL-4957                    TCGA-CL-5917 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-CL-5918                    TCGA-DC-4745 
  "DEL PEAK 11(5Q22.2) MUTATED" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-DC-4749                    TCGA-DC-5337 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-DC-5869                    TCGA-DC-6154 
  "DEL PEAK 11(5Q22.2) MUTATED" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-DC-6155                    TCGA-DC-6156 
  "DEL PEAK 11(5Q22.2) MUTATED"   "DEL PEAK 11(5Q22.2) MUTATED" 
                   TCGA-DC-6157                    TCGA-DC-6158 
  "DEL PEAK 11(5Q22.2) MUTATED"   "DEL PEAK 11(5Q22.2) MUTATED" 
                   TCGA-DC-6160                    TCGA-DC-6681 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-DC-6682                    TCGA-DC-6683 
  "DEL PEAK 11(5Q22.2) MUTATED" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-DT-5265                    TCGA-DY-A0XA 
"DEL PEAK 11(5Q22.2) WILD-TYPE"   "DEL PEAK 11(5Q22.2) MUTATED" 
                   TCGA-DY-A1DC                    TCGA-DY-A1DD 
  "DEL PEAK 11(5Q22.2) MUTATED"   "DEL PEAK 11(5Q22.2) MUTATED" 
                   TCGA-DY-A1DE                    TCGA-DY-A1DF 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-DY-A1DG                    TCGA-DY-A1H8 
  "DEL PEAK 11(5Q22.2) MUTATED" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-EF-5830                    TCGA-EF-5831 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-EI-6506                    TCGA-EI-6507 
  "DEL PEAK 11(5Q22.2) MUTATED"   "DEL PEAK 11(5Q22.2) MUTATED" 
                   TCGA-EI-6508                    TCGA-EI-6509 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-EI-6510                    TCGA-EI-6511 
  "DEL PEAK 11(5Q22.2) MUTATED" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-EI-6512                    TCGA-EI-6513 
"DEL PEAK 11(5Q22.2) WILD-TYPE"   "DEL PEAK 11(5Q22.2) MUTATED" 
                   TCGA-EI-6514                    TCGA-EI-6881 
"DEL PEAK 11(5Q22.2) WILD-TYPE"   "DEL PEAK 11(5Q22.2) MUTATED" 
                   TCGA-EI-6882                    TCGA-EI-6883 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-EI-6884                    TCGA-EI-6885 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-EI-6917                    TCGA-EI-7002 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-EI-7004                    TCGA-F5-6465 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-F5-6571                    TCGA-F5-6702 
"DEL PEAK 11(5Q22.2) WILD-TYPE"   "DEL PEAK 11(5Q22.2) MUTATED" 
                   TCGA-F5-6810                    TCGA-F5-6811 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-F5-6812                    TCGA-F5-6813 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-F5-6814                    TCGA-F5-6861 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-F5-6863                    TCGA-F5-6864 
"DEL PEAK 11(5Q22.2) WILD-TYPE"   "DEL PEAK 11(5Q22.2) MUTATED" 
                   TCGA-G5-6233                    TCGA-G5-6235 
  "DEL PEAK 11(5Q22.2) MUTATED" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-G5-6572                    TCGA-G5-6641 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AF-2687                    TCGA-AF-2689 
  "DEL PEAK 11(5Q22.2) MUTATED" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
  "DEL PEAK 11(5Q22.2) MUTATED"   "DEL PEAK 11(5Q22.2) MUTATED" 
                   TCGA-AF-2692                    TCGA-AF-2693 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AF-3400                    TCGA-AF-3911 
"DEL PEAK 11(5Q22.2) WILD-TYPE"   "DEL PEAK 11(5Q22.2) MUTATED" 
                   TCGA-AF-3913                    TCGA-AF-4110 
  "DEL PEAK 11(5Q22.2) MUTATED" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"DEL PEAK 11(5Q22.2) WILD-TYPE"   "DEL PEAK 11(5Q22.2) MUTATED" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"DEL PEAK 11(5Q22.2) WILD-TYPE"   "DEL PEAK 11(5Q22.2) MUTATED" 
                   TCGA-AG-3575                    TCGA-AG-3581 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-3582                    TCGA-AG-3583 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-3586                    TCGA-AG-3587 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-3599                    TCGA-AG-3605 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-3726                    TCGA-AG-3727 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-3731                    TCGA-AG-3742 
  "DEL PEAK 11(5Q22.2) MUTATED" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-3878                    TCGA-AG-3883 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-3896                    TCGA-AG-3999 
  "DEL PEAK 11(5Q22.2) MUTATED"   "DEL PEAK 11(5Q22.2) MUTATED" 
                   TCGA-AG-4001                    TCGA-AG-4007 
  "DEL PEAK 11(5Q22.2) MUTATED" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-4008                    TCGA-AG-4022 
  "DEL PEAK 11(5Q22.2) MUTATED" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-A002                    TCGA-AG-A008 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-A00C                    TCGA-AG-A00H 
  "DEL PEAK 11(5Q22.2) MUTATED" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-A00Y                    TCGA-AG-A011 
  "DEL PEAK 11(5Q22.2) MUTATED" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-A014                    TCGA-AG-A015 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-A016                    TCGA-AG-A01J 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-A01L                    TCGA-AG-A01N 
  "DEL PEAK 11(5Q22.2) MUTATED" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-A01W                    TCGA-AG-A01Y 
  "DEL PEAK 11(5Q22.2) MUTATED"   "DEL PEAK 11(5Q22.2) MUTATED" 
                   TCGA-AG-A020                    TCGA-AG-A023 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-A025                    TCGA-AG-A026 
"DEL PEAK 11(5Q22.2) WILD-TYPE"   "DEL PEAK 11(5Q22.2) MUTATED" 
                   TCGA-AG-A02G                    TCGA-AG-A02N 
  "DEL PEAK 11(5Q22.2) MUTATED" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-A02X                    TCGA-AG-A032 
  "DEL PEAK 11(5Q22.2) MUTATED" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AH-6544                    TCGA-AH-6547 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AH-6643                    TCGA-AH-6644 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AH-6897                    TCGA-AH-6903 
"DEL PEAK 11(5Q22.2) WILD-TYPE"   "DEL PEAK 11(5Q22.2) MUTATED" 
                   TCGA-BM-6198                    TCGA-CI-6619 
  "DEL PEAK 11(5Q22.2) MUTATED" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-CI-6620                    TCGA-CI-6622 
  "DEL PEAK 11(5Q22.2) MUTATED" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-CI-6623                    TCGA-CI-6624 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-CL-4957                    TCGA-CL-5917 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-CL-5918                    TCGA-DC-4745 
  "DEL PEAK 11(5Q22.2) MUTATED" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-DC-4749                    TCGA-DC-5337 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-DC-5869                    TCGA-DC-6154 
  "DEL PEAK 11(5Q22.2) MUTATED" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-DC-6155                    TCGA-DC-6156 
  "DEL PEAK 11(5Q22.2) MUTATED"   "DEL PEAK 11(5Q22.2) MUTATED" 
                   TCGA-DC-6157                    TCGA-DC-6158 
  "DEL PEAK 11(5Q22.2) MUTATED"   "DEL PEAK 11(5Q22.2) MUTATED" 
                   TCGA-DC-6160                    TCGA-DC-6681 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-DC-6682                    TCGA-DC-6683 
  "DEL PEAK 11(5Q22.2) MUTATED" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-DT-5265                    TCGA-DY-A0XA 
"DEL PEAK 11(5Q22.2) WILD-TYPE"   "DEL PEAK 11(5Q22.2) MUTATED" 
                   TCGA-DY-A1DC                    TCGA-DY-A1DD 
  "DEL PEAK 11(5Q22.2) MUTATED"   "DEL PEAK 11(5Q22.2) MUTATED" 
                   TCGA-DY-A1DE                    TCGA-DY-A1DF 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-DY-A1DG                    TCGA-DY-A1H8 
  "DEL PEAK 11(5Q22.2) MUTATED" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-EF-5830                    TCGA-EF-5831 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-EI-6506                    TCGA-EI-6507 
  "DEL PEAK 11(5Q22.2) MUTATED"   "DEL PEAK 11(5Q22.2) MUTATED" 
                   TCGA-EI-6508                    TCGA-EI-6509 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-EI-6510                    TCGA-EI-6511 
  "DEL PEAK 11(5Q22.2) MUTATED" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-EI-6512                    TCGA-EI-6513 
"DEL PEAK 11(5Q22.2) WILD-TYPE"   "DEL PEAK 11(5Q22.2) MUTATED" 
                   TCGA-EI-6514                    TCGA-EI-6881 
"DEL PEAK 11(5Q22.2) WILD-TYPE"   "DEL PEAK 11(5Q22.2) MUTATED" 
                   TCGA-EI-6882                    TCGA-EI-6883 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-EI-6884                    TCGA-EI-6885 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-EI-6917                    TCGA-EI-7002 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-EI-7004                    TCGA-F5-6465 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-F5-6571                    TCGA-F5-6702 
"DEL PEAK 11(5Q22.2) WILD-TYPE"   "DEL PEAK 11(5Q22.2) MUTATED" 
                   TCGA-F5-6810                    TCGA-F5-6811 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-F5-6812                    TCGA-F5-6813 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-F5-6814                    TCGA-F5-6861 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-F5-6863                    TCGA-F5-6864 
"DEL PEAK 11(5Q22.2) WILD-TYPE"   "DEL PEAK 11(5Q22.2) MUTATED" 
                   TCGA-G5-6233                    TCGA-G5-6235 
  "DEL PEAK 11(5Q22.2) MUTATED" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-G5-6572                    TCGA-G5-6641 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AF-2687                    TCGA-AF-2689 
  "DEL PEAK 11(5Q22.2) MUTATED" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
  "DEL PEAK 11(5Q22.2) MUTATED"   "DEL PEAK 11(5Q22.2) MUTATED" 
                   TCGA-AF-2692                    TCGA-AF-2693 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AF-3400                    TCGA-AF-3911 
"DEL PEAK 11(5Q22.2) WILD-TYPE"   "DEL PEAK 11(5Q22.2) MUTATED" 
                   TCGA-AF-3913                    TCGA-AF-4110 
  "DEL PEAK 11(5Q22.2) MUTATED" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"DEL PEAK 11(5Q22.2) WILD-TYPE"   "DEL PEAK 11(5Q22.2) MUTATED" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"DEL PEAK 11(5Q22.2) WILD-TYPE"   "DEL PEAK 11(5Q22.2) MUTATED" 
                   TCGA-AG-3575                    TCGA-AG-3581 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-3582                    TCGA-AG-3583 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-3586                    TCGA-AG-3587 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-3599                    TCGA-AG-3605 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-3726                    TCGA-AG-3727 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-3731                    TCGA-AG-3742 
  "DEL PEAK 11(5Q22.2) MUTATED" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-3878                    TCGA-AG-3883 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-3896                    TCGA-AG-3999 
  "DEL PEAK 11(5Q22.2) MUTATED"   "DEL PEAK 11(5Q22.2) MUTATED" 
                   TCGA-AG-4001                    TCGA-AG-4007 
  "DEL PEAK 11(5Q22.2) MUTATED" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-4008                    TCGA-AG-4022 
  "DEL PEAK 11(5Q22.2) MUTATED" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-A002                    TCGA-AG-A008 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-A00C                    TCGA-AG-A00H 
  "DEL PEAK 11(5Q22.2) MUTATED" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-A00Y                    TCGA-AG-A011 
  "DEL PEAK 11(5Q22.2) MUTATED" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-A014                    TCGA-AG-A015 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-A016                    TCGA-AG-A01J 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-A01L                    TCGA-AG-A01N 
  "DEL PEAK 11(5Q22.2) MUTATED" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-A01W                    TCGA-AG-A01Y 
  "DEL PEAK 11(5Q22.2) MUTATED"   "DEL PEAK 11(5Q22.2) MUTATED" 
                   TCGA-AG-A020                    TCGA-AG-A023 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-A025                    TCGA-AG-A026 
"DEL PEAK 11(5Q22.2) WILD-TYPE"   "DEL PEAK 11(5Q22.2) MUTATED" 
                   TCGA-AG-A02G                    TCGA-AG-A02N 
  "DEL PEAK 11(5Q22.2) MUTATED" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-A02X                    TCGA-AG-A032 
  "DEL PEAK 11(5Q22.2) MUTATED" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AH-6544                    TCGA-AH-6547 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AH-6643                    TCGA-AH-6644 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AH-6897                    TCGA-AH-6903 
"DEL PEAK 11(5Q22.2) WILD-TYPE"   "DEL PEAK 11(5Q22.2) MUTATED" 
                   TCGA-BM-6198                    TCGA-CI-6619 
  "DEL PEAK 11(5Q22.2) MUTATED" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-CI-6620                    TCGA-CI-6622 
  "DEL PEAK 11(5Q22.2) MUTATED" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-CI-6623                    TCGA-CI-6624 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-CL-4957                    TCGA-CL-5917 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-CL-5918                    TCGA-DC-4745 
  "DEL PEAK 11(5Q22.2) MUTATED" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-DC-4749                    TCGA-DC-5337 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-DC-5869                    TCGA-DC-6154 
  "DEL PEAK 11(5Q22.2) MUTATED" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-DC-6155                    TCGA-DC-6156 
  "DEL PEAK 11(5Q22.2) MUTATED"   "DEL PEAK 11(5Q22.2) MUTATED" 
                   TCGA-DC-6157                    TCGA-DC-6158 
  "DEL PEAK 11(5Q22.2) MUTATED"   "DEL PEAK 11(5Q22.2) MUTATED" 
                   TCGA-DC-6160                    TCGA-DC-6681 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-DC-6682                    TCGA-DC-6683 
  "DEL PEAK 11(5Q22.2) MUTATED" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-DT-5265                    TCGA-DY-A0XA 
"DEL PEAK 11(5Q22.2) WILD-TYPE"   "DEL PEAK 11(5Q22.2) MUTATED" 
                   TCGA-DY-A1DC                    TCGA-DY-A1DD 
  "DEL PEAK 11(5Q22.2) MUTATED"   "DEL PEAK 11(5Q22.2) MUTATED" 
                   TCGA-DY-A1DE                    TCGA-DY-A1DF 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-DY-A1DG                    TCGA-DY-A1H8 
  "DEL PEAK 11(5Q22.2) MUTATED" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-EF-5830                    TCGA-EF-5831 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-EI-6506                    TCGA-EI-6507 
  "DEL PEAK 11(5Q22.2) MUTATED"   "DEL PEAK 11(5Q22.2) MUTATED" 
                   TCGA-EI-6508                    TCGA-EI-6509 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-EI-6510                    TCGA-EI-6511 
  "DEL PEAK 11(5Q22.2) MUTATED" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-EI-6512                    TCGA-EI-6513 
"DEL PEAK 11(5Q22.2) WILD-TYPE"   "DEL PEAK 11(5Q22.2) MUTATED" 
                   TCGA-EI-6514                    TCGA-EI-6881 
"DEL PEAK 11(5Q22.2) WILD-TYPE"   "DEL PEAK 11(5Q22.2) MUTATED" 
                   TCGA-EI-6882                    TCGA-EI-6883 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-EI-6884                    TCGA-EI-6885 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-EI-6917                    TCGA-EI-7002 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-EI-7004                    TCGA-F5-6465 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-F5-6571                    TCGA-F5-6702 
"DEL PEAK 11(5Q22.2) WILD-TYPE"   "DEL PEAK 11(5Q22.2) MUTATED" 
                   TCGA-F5-6810                    TCGA-F5-6811 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-F5-6812                    TCGA-F5-6813 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-F5-6814                    TCGA-F5-6861 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-F5-6863                    TCGA-F5-6864 
"DEL PEAK 11(5Q22.2) WILD-TYPE"   "DEL PEAK 11(5Q22.2) MUTATED" 
                   TCGA-G5-6233                    TCGA-G5-6235 
  "DEL PEAK 11(5Q22.2) MUTATED" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-G5-6572                    TCGA-G5-6641 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
[1] "hr=" "2.6"
D36V2, continuous
                               vv
clus                            STAGE I STAGE II STAGE IIA STAGE IIB STAGE IIC
  DEL PEAK 11(5Q22.2) MUTATED         8        3        15         0         1
  DEL PEAK 11(5Q22.2) WILD-TYPE      22        5        23         2         1
                               vv
clus                            STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  DEL PEAK 11(5Q22.2) MUTATED           1          2         11          6
  DEL PEAK 11(5Q22.2) WILD-TYPE         4          7         12          8
                               vv
clus                            STAGE IV STAGE IVA
  DEL PEAK 11(5Q22.2) MUTATED          4         5
  DEL PEAK 11(5Q22.2) WILD-TYPE       13         4
D36V3, multiclass
                               vv
clus                            T1 T2 T3 T4
  DEL PEAK 11(5Q22.2) MUTATED    1 10 41  5
  DEL PEAK 11(5Q22.2) WILD-TYPE  8 19 68  9
D36V4, multiclass
    clus
vv   DEL PEAK 11(5Q22.2) MUTATED DEL PEAK 11(5Q22.2) WILD-TYPE
  T1                           1                             8
  T2                          10                            19
  T3                          41                            68
  T4                           5                             9
                               vv
clus                            N0 N1 N2
  DEL PEAK 11(5Q22.2) MUTATED   27 19 11
  DEL PEAK 11(5Q22.2) WILD-TYPE 56 26 21
D36V5, multiclass
    clus
vv   DEL PEAK 11(5Q22.2) MUTATED DEL PEAK 11(5Q22.2) WILD-TYPE
  N0                          27                            56
  N1                          19                            26
  N2                          11                            21
                               vv
clus                            M0 M1 M1A MX
  DEL PEAK 11(5Q22.2) MUTATED   43  7   1  5
  DEL PEAK 11(5Q22.2) WILD-TYPE 80 15   1  8
D36V6, multiclass
     clus
vv    DEL PEAK 11(5Q22.2) MUTATED DEL PEAK 11(5Q22.2) WILD-TYPE
  M0                           43                            80
  M1                            7                            15
  M1A                           1                             1
  MX                            5                             8
D36V7, binary
                               cls
clus                             0  1
  DEL PEAK 11(5Q22.2) MUTATED   29 28
  DEL PEAK 11(5Q22.2) WILD-TYPE 45 60
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 11(5Q22.2) MUTATED     29   28
  DEL PEAK 11(5Q22.2) WILD-TYPE   45   60
        clus
vv       DEL PEAK 11(5Q22.2) MUTATED DEL PEAK 11(5Q22.2) WILD-TYPE
  FEMALE                          29                            45
  MALE                            28                            60
D36V8, binary
                               cls
clus                             0  1
  DEL PEAK 11(5Q22.2) MUTATED   54  2
  DEL PEAK 11(5Q22.2) WILD-TYPE 89 11
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 11(5Q22.2) MUTATED     54    2
  DEL PEAK 11(5Q22.2) WILD-TYPE   89   11
                                clus
vv                               DEL PEAK 11(5Q22.2) MUTATED
  RECTAL ADENOCARCINOMA                                   54
  RECTAL MUCINOUS ADENOCARCINOMA                           2
                                clus
vv                               DEL PEAK 11(5Q22.2) WILD-TYPE
  RECTAL ADENOCARCINOMA                                     89
  RECTAL MUCINOUS ADENOCARCINOMA                            11
D36V9, binary
                               cls
clus                              0   1
  DEL PEAK 11(5Q22.2) MUTATED     5  52
  DEL PEAK 11(5Q22.2) WILD-TYPE   1 104
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 11(5Q22.2) MUTATED      5   52
  DEL PEAK 11(5Q22.2) WILD-TYPE    1  104
     clus
vv    DEL PEAK 11(5Q22.2) MUTATED DEL PEAK 11(5Q22.2) WILD-TYPE
  NO                            5                             1
  YES                          52                           104
                               vv
clus                            R0 R1 R2 RX
  DEL PEAK 11(5Q22.2) MUTATED   42  1  4  1
  DEL PEAK 11(5Q22.2) WILD-TYPE 79  1  8  2
D36V10, multiclass
    clus
vv   DEL PEAK 11(5Q22.2) MUTATED DEL PEAK 11(5Q22.2) WILD-TYPE
  R0                          42                            79
  R1                           1                             1
  R2                           4                             8
  RX                           1                             2
D36V11, continuous

Clustering(37) Variable = DEL PEAK 12(6P25.3) MUTATION ANALYSIS
D37V1, survival
                               sevent
clus2                             0   1
  DEL PEAK 12(6P25.3) MUTATED    13   2
  DEL PEAK 12(6P25.3) WILD-TYPE 104  11
  DEL PEAK 12(6P25.3) MUTATED DEL PEAK 12(6P25.3) WILD-TYPE 
                           15                           115 
  DEL PEAK 12(6P25.3) MUTATED DEL PEAK 12(6P25.3) WILD-TYPE 
                            2                            11 
$`DEL PEAK 12(6P25.3) MUTATED`
TCGA-AF-2690 TCGA-AF-2692 TCGA-AF-2693 TCGA-AF-3400 TCGA-AF-4110 TCGA-AG-4001 
       17.23        13.55        19.10        12.72        14.50         1.02 
TCGA-AG-A008 TCGA-AG-A011 TCGA-BM-6198 TCGA-DC-4745 TCGA-DC-6682 TCGA-DT-5265 
       13.91        17.03        10.19        10.98        13.02         5.29 
TCGA-DY-A1DF TCGA-EI-6511 TCGA-EI-6883 
       24.13        15.85        11.51 

$`DEL PEAK 12(6P25.3) WILD-TYPE`
TCGA-AF-2687 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-3911 TCGA-AF-3913 TCGA-AF-5654 
       24.13        17.95        10.62        25.02        10.39         8.45 
TCGA-AF-6136 TCGA-AF-6655 TCGA-AF-6672 TCGA-AG-3575 TCGA-AG-3581 TCGA-AG-3582 
       15.35        11.67        10.39        12.00         1.02         1.02 
TCGA-AG-3583 TCGA-AG-3586 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3605 TCGA-AG-3726 
        2.01         1.02         1.02         0.99         0.99         7.96 
TCGA-AG-3727 TCGA-AG-3731 TCGA-AG-3742 TCGA-AG-3878 TCGA-AG-3883 TCGA-AG-3887 
        0.95         1.02         0.99         0.99         1.02         0.92 
TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3896 TCGA-AG-3999 TCGA-AG-4007 
        1.02         0.99         0.99         1.02         1.02         1.02 
TCGA-AG-4008 TCGA-AG-4022 TCGA-AG-A002 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y 
        1.02         0.99        20.94         6.02        25.94        23.01 
TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01J TCGA-AG-A01L TCGA-AG-A01N 
       15.91        13.02         1.02         1.02        12.00        12.00 
TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A023 TCGA-AG-A025 TCGA-AG-A026 
       70.03        63.98        10.98        51.98        49.94         1.94 
TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AH-6544 TCGA-AH-6547 
       38.93        61.94        40.96        38.01         0.49         1.45 
TCGA-AH-6643 TCGA-AH-6644 TCGA-AH-6897 TCGA-AH-6903 TCGA-CI-6619 TCGA-CI-6620 
        0.69         0.72         4.60         1.81         6.02         6.02 
TCGA-CI-6622 TCGA-CI-6623 TCGA-CI-6624 TCGA-CL-4957 TCGA-CL-5917 TCGA-CL-5918 
        6.94         9.37         4.70        13.97        60.00         7.99 
TCGA-DC-4749 TCGA-DC-5337 TCGA-DC-5869 TCGA-DC-6154 TCGA-DC-6155 TCGA-DC-6156 
       11.01        15.02        12.99        12.00        14.01        15.02 
TCGA-DC-6157 TCGA-DC-6158 TCGA-DC-6160 TCGA-DC-6681 TCGA-DC-6683 TCGA-DY-A0XA 
       36.00         6.97        30.05        12.95        10.06       126.41 
TCGA-DY-A1DC TCGA-DY-A1DD TCGA-DY-A1DE TCGA-DY-A1DG TCGA-DY-A1H8 TCGA-EF-5830 
       41.33        57.24       129.27        51.48        32.58         0.49 
TCGA-EF-5831 TCGA-EI-6506 TCGA-EI-6507 TCGA-EI-6508 TCGA-EI-6509 TCGA-EI-6510 
        2.40        20.55        19.96        20.91        17.00        18.28 
TCGA-EI-6512 TCGA-EI-6513 TCGA-EI-6514 TCGA-EI-6881 TCGA-EI-6882 TCGA-EI-6884 
       17.69        16.34        16.31        16.37         8.61        10.78 
TCGA-EI-6885 TCGA-EI-6917 TCGA-EI-7002 TCGA-EI-7004 TCGA-F5-6465 TCGA-F5-6571 
       13.61        17.46        11.97         8.45         3.39         0.85 
TCGA-F5-6702 TCGA-F5-6810 TCGA-F5-6811 TCGA-F5-6812 TCGA-F5-6813 TCGA-F5-6814 
        2.17         0.39         1.02         0.66         0.69         0.53 
TCGA-F5-6861 TCGA-F5-6863 TCGA-F5-6864 TCGA-G5-6233 TCGA-G5-6235 TCGA-G5-6572 
        1.08         0.76         0.46        18.25        55.76        47.08 
TCGA-G5-6641 
       26.43 

  DEL PEAK 12(6P25.3) MUTATED DEL PEAK 12(6P25.3) WILD-TYPE 
                         1.02                          0.39 
  DEL PEAK 12(6P25.3) MUTATED DEL PEAK 12(6P25.3) WILD-TYPE 
                        24.13                        129.27 
  DEL PEAK 12(6P25.3) MUTATED DEL PEAK 12(6P25.3) WILD-TYPE 
                        13.55                         10.39 
[1] "1.0 - 24.1 (13.6)"  "0.4 - 129.3 (10.4)"
                   TCGA-AF-2687                    TCGA-AF-2689 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
  "DEL PEAK 12(6P25.3) MUTATED" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AF-2692                    TCGA-AF-2693 
  "DEL PEAK 12(6P25.3) MUTATED"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-AF-3400                    TCGA-AF-3911 
  "DEL PEAK 12(6P25.3) MUTATED" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AF-3913                    TCGA-AF-4110 
"DEL PEAK 12(6P25.3) WILD-TYPE"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-3575                    TCGA-AG-3581 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-3582                    TCGA-AG-3583 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-3586                    TCGA-AG-3587 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-3599                    TCGA-AG-3605 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-3726                    TCGA-AG-3727 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-3731                    TCGA-AG-3742 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-3878                    TCGA-AG-3883 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-3896                    TCGA-AG-3999 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-4001                    TCGA-AG-4007 
  "DEL PEAK 12(6P25.3) MUTATED" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-4008                    TCGA-AG-4022 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-A002                    TCGA-AG-A008 
"DEL PEAK 12(6P25.3) WILD-TYPE"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-AG-A00C                    TCGA-AG-A00H 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-A00Y                    TCGA-AG-A011 
"DEL PEAK 12(6P25.3) WILD-TYPE"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-AG-A014                    TCGA-AG-A015 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-A016                    TCGA-AG-A01J 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-A01L                    TCGA-AG-A01N 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-A01W                    TCGA-AG-A01Y 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-A020                    TCGA-AG-A023 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-A025                    TCGA-AG-A026 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-A02G                    TCGA-AG-A02N 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-A02X                    TCGA-AG-A032 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AH-6544                    TCGA-AH-6547 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AH-6643                    TCGA-AH-6644 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AH-6897                    TCGA-AH-6903 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-BM-6198                    TCGA-CI-6619 
  "DEL PEAK 12(6P25.3) MUTATED" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CI-6620                    TCGA-CI-6622 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CI-6623                    TCGA-CI-6624 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CL-4957                    TCGA-CL-5917 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CL-5918                    TCGA-DC-4745 
"DEL PEAK 12(6P25.3) WILD-TYPE"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-DC-4749                    TCGA-DC-5337 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-DC-5869                    TCGA-DC-6154 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-DC-6155                    TCGA-DC-6156 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-DC-6157                    TCGA-DC-6158 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-DC-6160                    TCGA-DC-6681 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-DC-6682                    TCGA-DC-6683 
  "DEL PEAK 12(6P25.3) MUTATED" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-DT-5265                    TCGA-DY-A0XA 
  "DEL PEAK 12(6P25.3) MUTATED" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-DY-A1DC                    TCGA-DY-A1DD 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-DY-A1DE                    TCGA-DY-A1DF 
"DEL PEAK 12(6P25.3) WILD-TYPE"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-DY-A1DG                    TCGA-DY-A1H8 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-EF-5830                    TCGA-EF-5831 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-EI-6506                    TCGA-EI-6507 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-EI-6508                    TCGA-EI-6509 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-EI-6510                    TCGA-EI-6511 
"DEL PEAK 12(6P25.3) WILD-TYPE"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-EI-6512                    TCGA-EI-6513 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-EI-6514                    TCGA-EI-6881 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-EI-6882                    TCGA-EI-6883 
"DEL PEAK 12(6P25.3) WILD-TYPE"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-EI-6884                    TCGA-EI-6885 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-EI-6917                    TCGA-EI-7002 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-EI-7004                    TCGA-F5-6465 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-F5-6571                    TCGA-F5-6702 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-F5-6810                    TCGA-F5-6811 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-F5-6812                    TCGA-F5-6813 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-F5-6814                    TCGA-F5-6861 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-F5-6863                    TCGA-F5-6864 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-G5-6233                    TCGA-G5-6235 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-G5-6572                    TCGA-G5-6641 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AF-2687                    TCGA-AF-2689 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
  "DEL PEAK 12(6P25.3) MUTATED" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AF-2692                    TCGA-AF-2693 
  "DEL PEAK 12(6P25.3) MUTATED"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-AF-3400                    TCGA-AF-3911 
  "DEL PEAK 12(6P25.3) MUTATED" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AF-3913                    TCGA-AF-4110 
"DEL PEAK 12(6P25.3) WILD-TYPE"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-3575                    TCGA-AG-3581 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-3582                    TCGA-AG-3583 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-3586                    TCGA-AG-3587 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-3599                    TCGA-AG-3605 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-3726                    TCGA-AG-3727 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-3731                    TCGA-AG-3742 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-3878                    TCGA-AG-3883 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-3896                    TCGA-AG-3999 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-4001                    TCGA-AG-4007 
  "DEL PEAK 12(6P25.3) MUTATED" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-4008                    TCGA-AG-4022 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-A002                    TCGA-AG-A008 
"DEL PEAK 12(6P25.3) WILD-TYPE"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-AG-A00C                    TCGA-AG-A00H 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-A00Y                    TCGA-AG-A011 
"DEL PEAK 12(6P25.3) WILD-TYPE"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-AG-A014                    TCGA-AG-A015 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-A016                    TCGA-AG-A01J 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-A01L                    TCGA-AG-A01N 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-A01W                    TCGA-AG-A01Y 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-A020                    TCGA-AG-A023 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-A025                    TCGA-AG-A026 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-A02G                    TCGA-AG-A02N 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-A02X                    TCGA-AG-A032 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AH-6544                    TCGA-AH-6547 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AH-6643                    TCGA-AH-6644 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AH-6897                    TCGA-AH-6903 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-BM-6198                    TCGA-CI-6619 
  "DEL PEAK 12(6P25.3) MUTATED" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CI-6620                    TCGA-CI-6622 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CI-6623                    TCGA-CI-6624 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CL-4957                    TCGA-CL-5917 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CL-5918                    TCGA-DC-4745 
"DEL PEAK 12(6P25.3) WILD-TYPE"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-DC-4749                    TCGA-DC-5337 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-DC-5869                    TCGA-DC-6154 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-DC-6155                    TCGA-DC-6156 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-DC-6157                    TCGA-DC-6158 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-DC-6160                    TCGA-DC-6681 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-DC-6682                    TCGA-DC-6683 
  "DEL PEAK 12(6P25.3) MUTATED" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-DT-5265                    TCGA-DY-A0XA 
  "DEL PEAK 12(6P25.3) MUTATED" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-DY-A1DC                    TCGA-DY-A1DD 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-DY-A1DE                    TCGA-DY-A1DF 
"DEL PEAK 12(6P25.3) WILD-TYPE"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-DY-A1DG                    TCGA-DY-A1H8 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-EF-5830                    TCGA-EF-5831 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-EI-6506                    TCGA-EI-6507 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-EI-6508                    TCGA-EI-6509 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-EI-6510                    TCGA-EI-6511 
"DEL PEAK 12(6P25.3) WILD-TYPE"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-EI-6512                    TCGA-EI-6513 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-EI-6514                    TCGA-EI-6881 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-EI-6882                    TCGA-EI-6883 
"DEL PEAK 12(6P25.3) WILD-TYPE"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-EI-6884                    TCGA-EI-6885 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-EI-6917                    TCGA-EI-7002 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-EI-7004                    TCGA-F5-6465 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-F5-6571                    TCGA-F5-6702 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-F5-6810                    TCGA-F5-6811 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-F5-6812                    TCGA-F5-6813 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-F5-6814                    TCGA-F5-6861 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-F5-6863                    TCGA-F5-6864 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-G5-6233                    TCGA-G5-6235 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-G5-6572                    TCGA-G5-6641 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AF-2687                    TCGA-AF-2689 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
  "DEL PEAK 12(6P25.3) MUTATED" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AF-2692                    TCGA-AF-2693 
  "DEL PEAK 12(6P25.3) MUTATED"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-AF-3400                    TCGA-AF-3911 
  "DEL PEAK 12(6P25.3) MUTATED" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AF-3913                    TCGA-AF-4110 
"DEL PEAK 12(6P25.3) WILD-TYPE"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-3575                    TCGA-AG-3581 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-3582                    TCGA-AG-3583 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-3586                    TCGA-AG-3587 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-3599                    TCGA-AG-3605 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-3726                    TCGA-AG-3727 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-3731                    TCGA-AG-3742 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-3878                    TCGA-AG-3883 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-3896                    TCGA-AG-3999 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-4001                    TCGA-AG-4007 
  "DEL PEAK 12(6P25.3) MUTATED" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-4008                    TCGA-AG-4022 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-A002                    TCGA-AG-A008 
"DEL PEAK 12(6P25.3) WILD-TYPE"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-AG-A00C                    TCGA-AG-A00H 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-A00Y                    TCGA-AG-A011 
"DEL PEAK 12(6P25.3) WILD-TYPE"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-AG-A014                    TCGA-AG-A015 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-A016                    TCGA-AG-A01J 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-A01L                    TCGA-AG-A01N 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-A01W                    TCGA-AG-A01Y 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-A020                    TCGA-AG-A023 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-A025                    TCGA-AG-A026 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-A02G                    TCGA-AG-A02N 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-A02X                    TCGA-AG-A032 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AH-6544                    TCGA-AH-6547 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AH-6643                    TCGA-AH-6644 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AH-6897                    TCGA-AH-6903 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-BM-6198                    TCGA-CI-6619 
  "DEL PEAK 12(6P25.3) MUTATED" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CI-6620                    TCGA-CI-6622 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CI-6623                    TCGA-CI-6624 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CL-4957                    TCGA-CL-5917 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CL-5918                    TCGA-DC-4745 
"DEL PEAK 12(6P25.3) WILD-TYPE"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-DC-4749                    TCGA-DC-5337 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-DC-5869                    TCGA-DC-6154 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-DC-6155                    TCGA-DC-6156 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-DC-6157                    TCGA-DC-6158 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-DC-6160                    TCGA-DC-6681 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-DC-6682                    TCGA-DC-6683 
  "DEL PEAK 12(6P25.3) MUTATED" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-DT-5265                    TCGA-DY-A0XA 
  "DEL PEAK 12(6P25.3) MUTATED" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-DY-A1DC                    TCGA-DY-A1DD 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-DY-A1DE                    TCGA-DY-A1DF 
"DEL PEAK 12(6P25.3) WILD-TYPE"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-DY-A1DG                    TCGA-DY-A1H8 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-EF-5830                    TCGA-EF-5831 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-EI-6506                    TCGA-EI-6507 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-EI-6508                    TCGA-EI-6509 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-EI-6510                    TCGA-EI-6511 
"DEL PEAK 12(6P25.3) WILD-TYPE"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-EI-6512                    TCGA-EI-6513 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-EI-6514                    TCGA-EI-6881 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-EI-6882                    TCGA-EI-6883 
"DEL PEAK 12(6P25.3) WILD-TYPE"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-EI-6884                    TCGA-EI-6885 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-EI-6917                    TCGA-EI-7002 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-EI-7004                    TCGA-F5-6465 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-F5-6571                    TCGA-F5-6702 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-F5-6810                    TCGA-F5-6811 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-F5-6812                    TCGA-F5-6813 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-F5-6814                    TCGA-F5-6861 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-F5-6863                    TCGA-F5-6864 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-G5-6233                    TCGA-G5-6235 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-G5-6572                    TCGA-G5-6641 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
[1] "hr=" "4.2"
D37V2, continuous
                               vv
clus                            STAGE I STAGE II STAGE IIA STAGE IIB STAGE IIC
  DEL PEAK 12(6P25.3) MUTATED         2        1        11         0         1
  DEL PEAK 12(6P25.3) WILD-TYPE      28        7        27         2         1
                               vv
clus                            STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  DEL PEAK 12(6P25.3) MUTATED           1          0          3          2
  DEL PEAK 12(6P25.3) WILD-TYPE         4          9         20         12
                               vv
clus                            STAGE IV STAGE IVA
  DEL PEAK 12(6P25.3) MUTATED          2         1
  DEL PEAK 12(6P25.3) WILD-TYPE       15         8
D37V3, multiclass
                               vv
clus                            T1 T2 T3 T4
  DEL PEAK 12(6P25.3) MUTATED    0  2 21  1
  DEL PEAK 12(6P25.3) WILD-TYPE  9 27 88 13
D37V4, multiclass
    clus
vv   DEL PEAK 12(6P25.3) MUTATED DEL PEAK 12(6P25.3) WILD-TYPE
  T1                           0                             9
  T2                           2                            27
  T3                          21                            88
  T4                           1                            13
                               vv
clus                            N0 N1 N2
  DEL PEAK 12(6P25.3) MUTATED   15  4  5
  DEL PEAK 12(6P25.3) WILD-TYPE 68 41 27
D37V5, multiclass
    clus
vv   DEL PEAK 12(6P25.3) MUTATED DEL PEAK 12(6P25.3) WILD-TYPE
  N0                          15                            68
  N1                           4                            41
  N2                           5                            27
                               vv
clus                             M0  M1 M1A  MX
  DEL PEAK 12(6P25.3) MUTATED    18   2   0   3
  DEL PEAK 12(6P25.3) WILD-TYPE 105  20   2  10
D37V6, multiclass
     clus
vv    DEL PEAK 12(6P25.3) MUTATED DEL PEAK 12(6P25.3) WILD-TYPE
  M0                           18                           105
  M1                            2                            20
  M1A                           0                             2
  MX                            3                            10
D37V7, binary
                               cls
clus                             0  1
  DEL PEAK 12(6P25.3) MUTATED   10 14
  DEL PEAK 12(6P25.3) WILD-TYPE 64 74
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 12(6P25.3) MUTATED     10   14
  DEL PEAK 12(6P25.3) WILD-TYPE   64   74
        clus
vv       DEL PEAK 12(6P25.3) MUTATED DEL PEAK 12(6P25.3) WILD-TYPE
  FEMALE                          10                            64
  MALE                            14                            74
D37V8, binary
                               cls
clus                              0   1
  DEL PEAK 12(6P25.3) MUTATED    18   3
  DEL PEAK 12(6P25.3) WILD-TYPE 125  10
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 12(6P25.3) MUTATED     18    3
  DEL PEAK 12(6P25.3) WILD-TYPE  125   10
                                clus
vv                               DEL PEAK 12(6P25.3) MUTATED
  RECTAL ADENOCARCINOMA                                   18
  RECTAL MUCINOUS ADENOCARCINOMA                           3
                                clus
vv                               DEL PEAK 12(6P25.3) WILD-TYPE
  RECTAL ADENOCARCINOMA                                    125
  RECTAL MUCINOUS ADENOCARCINOMA                            10
D37V9, binary
                               cls
clus                              0   1
  DEL PEAK 12(6P25.3) MUTATED     2  22
  DEL PEAK 12(6P25.3) WILD-TYPE   4 134
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 12(6P25.3) MUTATED      2   22
  DEL PEAK 12(6P25.3) WILD-TYPE    4  134
     clus
vv    DEL PEAK 12(6P25.3) MUTATED DEL PEAK 12(6P25.3) WILD-TYPE
  NO                            2                             4
  YES                          22                           134
                               vv
clus                             R0  R1  R2  RX
  DEL PEAK 12(6P25.3) MUTATED    18   0   2   1
  DEL PEAK 12(6P25.3) WILD-TYPE 103   2  10   2
D37V10, multiclass
    clus
vv   DEL PEAK 12(6P25.3) MUTATED DEL PEAK 12(6P25.3) WILD-TYPE
  R0                          18                           103
  R1                           0                             2
  R2                           2                            10
  RX                           1                             2
D37V11, continuous

Clustering(38) Variable = DEL PEAK 13(6Q26) MUTATION ANALYSIS
D38V1, survival
                             sevent
clus2                           0   1
  DEL PEAK 13(6Q26) MUTATED    17   2
  DEL PEAK 13(6Q26) WILD-TYPE 100  11
  DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE 
                         19                         111 
  DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE 
                          2                          11 
$`DEL PEAK 13(6Q26) MUTATED`
TCGA-AF-2690 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-2693 TCGA-AF-3400 TCGA-AF-3911 
       17.23        10.62        13.55        19.10        12.72        25.02 
TCGA-AG-3575 TCGA-AG-3587 TCGA-AG-4007 TCGA-AG-A008 TCGA-AG-A011 TCGA-AH-6544 
       12.00         1.02         1.02        13.91        17.03         0.49 
TCGA-AH-6644 TCGA-CI-6623 TCGA-DC-6682 TCGA-DT-5265 TCGA-F5-6863 TCGA-G5-6233 
        0.72         9.37        13.02         5.29         0.76        18.25 
TCGA-G5-6641 
       26.43 

$`DEL PEAK 13(6Q26) WILD-TYPE`
TCGA-AF-2687 TCGA-AF-2689 TCGA-AF-3913 TCGA-AF-4110 TCGA-AF-5654 TCGA-AF-6136 
       24.13        17.95        10.39        14.50         8.45        15.35 
TCGA-AF-6655 TCGA-AF-6672 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3586 
       11.67        10.39         1.02         1.02         2.01         1.02 
TCGA-AG-3599 TCGA-AG-3605 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3731 TCGA-AG-3742 
        0.99         0.99         7.96         0.95         1.02         0.99 
TCGA-AG-3878 TCGA-AG-3883 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 
        0.99         1.02         0.92         1.02         0.99         0.99 
TCGA-AG-3896 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4008 TCGA-AG-4022 TCGA-AG-A002 
        1.02         1.02         1.02         1.02         0.99        20.94 
TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 
        6.02        25.94        23.01        15.91        13.02         1.02 
TCGA-AG-A01J TCGA-AG-A01L TCGA-AG-A01N TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 
        1.02        12.00        12.00        70.03        63.98        10.98 
TCGA-AG-A023 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X 
       51.98        49.94         1.94        38.93        61.94        40.96 
TCGA-AG-A032 TCGA-AH-6547 TCGA-AH-6643 TCGA-AH-6897 TCGA-AH-6903 TCGA-BM-6198 
       38.01         1.45         0.69         4.60         1.81        10.19 
TCGA-CI-6619 TCGA-CI-6620 TCGA-CI-6622 TCGA-CI-6624 TCGA-CL-4957 TCGA-CL-5917 
        6.02         6.02         6.94         4.70        13.97        60.00 
TCGA-CL-5918 TCGA-DC-4745 TCGA-DC-4749 TCGA-DC-5337 TCGA-DC-5869 TCGA-DC-6154 
        7.99        10.98        11.01        15.02        12.99        12.00 
TCGA-DC-6155 TCGA-DC-6156 TCGA-DC-6157 TCGA-DC-6158 TCGA-DC-6160 TCGA-DC-6681 
       14.01        15.02        36.00         6.97        30.05        12.95 
TCGA-DC-6683 TCGA-DY-A0XA TCGA-DY-A1DC TCGA-DY-A1DD TCGA-DY-A1DE TCGA-DY-A1DF 
       10.06       126.41        41.33        57.24       129.27        24.13 
TCGA-DY-A1DG TCGA-DY-A1H8 TCGA-EF-5830 TCGA-EF-5831 TCGA-EI-6506 TCGA-EI-6507 
       51.48        32.58         0.49         2.40        20.55        19.96 
TCGA-EI-6508 TCGA-EI-6509 TCGA-EI-6510 TCGA-EI-6511 TCGA-EI-6512 TCGA-EI-6513 
       20.91        17.00        18.28        15.85        17.69        16.34 
TCGA-EI-6514 TCGA-EI-6881 TCGA-EI-6882 TCGA-EI-6883 TCGA-EI-6884 TCGA-EI-6885 
       16.31        16.37         8.61        11.51        10.78        13.61 
TCGA-EI-6917 TCGA-EI-7002 TCGA-EI-7004 TCGA-F5-6465 TCGA-F5-6571 TCGA-F5-6702 
       17.46        11.97         8.45         3.39         0.85         2.17 
TCGA-F5-6810 TCGA-F5-6811 TCGA-F5-6812 TCGA-F5-6813 TCGA-F5-6814 TCGA-F5-6861 
        0.39         1.02         0.66         0.69         0.53         1.08 
TCGA-F5-6864 TCGA-G5-6235 TCGA-G5-6572 
        0.46        55.76        47.08 

  DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE 
                       0.49                        0.39 
  DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE 
                      26.43                      129.27 
  DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE 
                      12.72                       10.98 
[1] "0.5 - 26.4 (12.7)"  "0.4 - 129.3 (11.0)"
                 TCGA-AF-2687                  TCGA-AF-2689 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AF-2690                  TCGA-AF-2691 
  "DEL PEAK 13(6Q26) MUTATED"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-AF-2692                  TCGA-AF-2693 
  "DEL PEAK 13(6Q26) MUTATED"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-AF-3400                  TCGA-AF-3911 
  "DEL PEAK 13(6Q26) MUTATED"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-AF-3913                  TCGA-AF-4110 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AF-5654                  TCGA-AF-6136 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AF-6655                  TCGA-AF-6672 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-3575                  TCGA-AG-3581 
  "DEL PEAK 13(6Q26) MUTATED" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-3582                  TCGA-AG-3583 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-3586                  TCGA-AG-3587 
"DEL PEAK 13(6Q26) WILD-TYPE"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-AG-3599                  TCGA-AG-3605 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-3726                  TCGA-AG-3727 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-3731                  TCGA-AG-3742 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-3878                  TCGA-AG-3883 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-3887                  TCGA-AG-3892 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-3893                  TCGA-AG-3894 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-3896                  TCGA-AG-3999 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-4001                  TCGA-AG-4007 
"DEL PEAK 13(6Q26) WILD-TYPE"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-AG-4008                  TCGA-AG-4022 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-A002                  TCGA-AG-A008 
"DEL PEAK 13(6Q26) WILD-TYPE"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-AG-A00C                  TCGA-AG-A00H 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-A00Y                  TCGA-AG-A011 
"DEL PEAK 13(6Q26) WILD-TYPE"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-AG-A014                  TCGA-AG-A015 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-A016                  TCGA-AG-A01J 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-A01L                  TCGA-AG-A01N 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-A01W                  TCGA-AG-A01Y 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-A020                  TCGA-AG-A023 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-A025                  TCGA-AG-A026 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-A02G                  TCGA-AG-A02N 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-A02X                  TCGA-AG-A032 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AH-6544                  TCGA-AH-6547 
  "DEL PEAK 13(6Q26) MUTATED" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AH-6643                  TCGA-AH-6644 
"DEL PEAK 13(6Q26) WILD-TYPE"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-AH-6897                  TCGA-AH-6903 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-BM-6198                  TCGA-CI-6619 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-CI-6620                  TCGA-CI-6622 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-CI-6623                  TCGA-CI-6624 
  "DEL PEAK 13(6Q26) MUTATED" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-CL-4957                  TCGA-CL-5917 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-CL-5918                  TCGA-DC-4745 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-DC-4749                  TCGA-DC-5337 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-DC-5869                  TCGA-DC-6154 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-DC-6155                  TCGA-DC-6156 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-DC-6157                  TCGA-DC-6158 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-DC-6160                  TCGA-DC-6681 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-DC-6682                  TCGA-DC-6683 
  "DEL PEAK 13(6Q26) MUTATED" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-DT-5265                  TCGA-DY-A0XA 
  "DEL PEAK 13(6Q26) MUTATED" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-DY-A1DC                  TCGA-DY-A1DD 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-DY-A1DE                  TCGA-DY-A1DF 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-DY-A1DG                  TCGA-DY-A1H8 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-EF-5830                  TCGA-EF-5831 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-EI-6506                  TCGA-EI-6507 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-EI-6508                  TCGA-EI-6509 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-EI-6510                  TCGA-EI-6511 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-EI-6512                  TCGA-EI-6513 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-EI-6514                  TCGA-EI-6881 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-EI-6882                  TCGA-EI-6883 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-EI-6884                  TCGA-EI-6885 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-EI-6917                  TCGA-EI-7002 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-EI-7004                  TCGA-F5-6465 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-F5-6571                  TCGA-F5-6702 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-F5-6810                  TCGA-F5-6811 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-F5-6812                  TCGA-F5-6813 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-F5-6814                  TCGA-F5-6861 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-F5-6863                  TCGA-F5-6864 
  "DEL PEAK 13(6Q26) MUTATED" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-G5-6233                  TCGA-G5-6235 
  "DEL PEAK 13(6Q26) MUTATED" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-G5-6572                  TCGA-G5-6641 
"DEL PEAK 13(6Q26) WILD-TYPE"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-AF-2687                  TCGA-AF-2689 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AF-2690                  TCGA-AF-2691 
  "DEL PEAK 13(6Q26) MUTATED"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-AF-2692                  TCGA-AF-2693 
  "DEL PEAK 13(6Q26) MUTATED"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-AF-3400                  TCGA-AF-3911 
  "DEL PEAK 13(6Q26) MUTATED"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-AF-3913                  TCGA-AF-4110 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AF-5654                  TCGA-AF-6136 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AF-6655                  TCGA-AF-6672 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-3575                  TCGA-AG-3581 
  "DEL PEAK 13(6Q26) MUTATED" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-3582                  TCGA-AG-3583 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-3586                  TCGA-AG-3587 
"DEL PEAK 13(6Q26) WILD-TYPE"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-AG-3599                  TCGA-AG-3605 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-3726                  TCGA-AG-3727 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-3731                  TCGA-AG-3742 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-3878                  TCGA-AG-3883 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-3887                  TCGA-AG-3892 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-3893                  TCGA-AG-3894 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-3896                  TCGA-AG-3999 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-4001                  TCGA-AG-4007 
"DEL PEAK 13(6Q26) WILD-TYPE"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-AG-4008                  TCGA-AG-4022 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-A002                  TCGA-AG-A008 
"DEL PEAK 13(6Q26) WILD-TYPE"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-AG-A00C                  TCGA-AG-A00H 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-A00Y                  TCGA-AG-A011 
"DEL PEAK 13(6Q26) WILD-TYPE"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-AG-A014                  TCGA-AG-A015 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-A016                  TCGA-AG-A01J 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-A01L                  TCGA-AG-A01N 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-A01W                  TCGA-AG-A01Y 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-A020                  TCGA-AG-A023 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-A025                  TCGA-AG-A026 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-A02G                  TCGA-AG-A02N 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-A02X                  TCGA-AG-A032 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AH-6544                  TCGA-AH-6547 
  "DEL PEAK 13(6Q26) MUTATED" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AH-6643                  TCGA-AH-6644 
"DEL PEAK 13(6Q26) WILD-TYPE"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-AH-6897                  TCGA-AH-6903 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-BM-6198                  TCGA-CI-6619 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-CI-6620                  TCGA-CI-6622 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-CI-6623                  TCGA-CI-6624 
  "DEL PEAK 13(6Q26) MUTATED" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-CL-4957                  TCGA-CL-5917 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-CL-5918                  TCGA-DC-4745 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-DC-4749                  TCGA-DC-5337 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-DC-5869                  TCGA-DC-6154 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-DC-6155                  TCGA-DC-6156 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-DC-6157                  TCGA-DC-6158 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-DC-6160                  TCGA-DC-6681 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-DC-6682                  TCGA-DC-6683 
  "DEL PEAK 13(6Q26) MUTATED" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-DT-5265                  TCGA-DY-A0XA 
  "DEL PEAK 13(6Q26) MUTATED" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-DY-A1DC                  TCGA-DY-A1DD 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-DY-A1DE                  TCGA-DY-A1DF 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-DY-A1DG                  TCGA-DY-A1H8 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-EF-5830                  TCGA-EF-5831 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-EI-6506                  TCGA-EI-6507 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-EI-6508                  TCGA-EI-6509 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-EI-6510                  TCGA-EI-6511 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-EI-6512                  TCGA-EI-6513 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-EI-6514                  TCGA-EI-6881 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-EI-6882                  TCGA-EI-6883 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-EI-6884                  TCGA-EI-6885 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-EI-6917                  TCGA-EI-7002 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-EI-7004                  TCGA-F5-6465 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-F5-6571                  TCGA-F5-6702 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-F5-6810                  TCGA-F5-6811 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-F5-6812                  TCGA-F5-6813 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-F5-6814                  TCGA-F5-6861 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-F5-6863                  TCGA-F5-6864 
  "DEL PEAK 13(6Q26) MUTATED" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-G5-6233                  TCGA-G5-6235 
  "DEL PEAK 13(6Q26) MUTATED" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-G5-6572                  TCGA-G5-6641 
"DEL PEAK 13(6Q26) WILD-TYPE"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-AF-2687                  TCGA-AF-2689 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AF-2690                  TCGA-AF-2691 
  "DEL PEAK 13(6Q26) MUTATED"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-AF-2692                  TCGA-AF-2693 
  "DEL PEAK 13(6Q26) MUTATED"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-AF-3400                  TCGA-AF-3911 
  "DEL PEAK 13(6Q26) MUTATED"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-AF-3913                  TCGA-AF-4110 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AF-5654                  TCGA-AF-6136 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AF-6655                  TCGA-AF-6672 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-3575                  TCGA-AG-3581 
  "DEL PEAK 13(6Q26) MUTATED" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-3582                  TCGA-AG-3583 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-3586                  TCGA-AG-3587 
"DEL PEAK 13(6Q26) WILD-TYPE"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-AG-3599                  TCGA-AG-3605 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-3726                  TCGA-AG-3727 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-3731                  TCGA-AG-3742 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-3878                  TCGA-AG-3883 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-3887                  TCGA-AG-3892 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-3893                  TCGA-AG-3894 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-3896                  TCGA-AG-3999 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-4001                  TCGA-AG-4007 
"DEL PEAK 13(6Q26) WILD-TYPE"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-AG-4008                  TCGA-AG-4022 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-A002                  TCGA-AG-A008 
"DEL PEAK 13(6Q26) WILD-TYPE"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-AG-A00C                  TCGA-AG-A00H 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-A00Y                  TCGA-AG-A011 
"DEL PEAK 13(6Q26) WILD-TYPE"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-AG-A014                  TCGA-AG-A015 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-A016                  TCGA-AG-A01J 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-A01L                  TCGA-AG-A01N 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-A01W                  TCGA-AG-A01Y 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-A020                  TCGA-AG-A023 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-A025                  TCGA-AG-A026 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-A02G                  TCGA-AG-A02N 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-A02X                  TCGA-AG-A032 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AH-6544                  TCGA-AH-6547 
  "DEL PEAK 13(6Q26) MUTATED" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AH-6643                  TCGA-AH-6644 
"DEL PEAK 13(6Q26) WILD-TYPE"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-AH-6897                  TCGA-AH-6903 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-BM-6198                  TCGA-CI-6619 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-CI-6620                  TCGA-CI-6622 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-CI-6623                  TCGA-CI-6624 
  "DEL PEAK 13(6Q26) MUTATED" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-CL-4957                  TCGA-CL-5917 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-CL-5918                  TCGA-DC-4745 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-DC-4749                  TCGA-DC-5337 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-DC-5869                  TCGA-DC-6154 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-DC-6155                  TCGA-DC-6156 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-DC-6157                  TCGA-DC-6158 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-DC-6160                  TCGA-DC-6681 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-DC-6682                  TCGA-DC-6683 
  "DEL PEAK 13(6Q26) MUTATED" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-DT-5265                  TCGA-DY-A0XA 
  "DEL PEAK 13(6Q26) MUTATED" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-DY-A1DC                  TCGA-DY-A1DD 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-DY-A1DE                  TCGA-DY-A1DF 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-DY-A1DG                  TCGA-DY-A1H8 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-EF-5830                  TCGA-EF-5831 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-EI-6506                  TCGA-EI-6507 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-EI-6508                  TCGA-EI-6509 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-EI-6510                  TCGA-EI-6511 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-EI-6512                  TCGA-EI-6513 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-EI-6514                  TCGA-EI-6881 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-EI-6882                  TCGA-EI-6883 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-EI-6884                  TCGA-EI-6885 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-EI-6917                  TCGA-EI-7002 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-EI-7004                  TCGA-F5-6465 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-F5-6571                  TCGA-F5-6702 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-F5-6810                  TCGA-F5-6811 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-F5-6812                  TCGA-F5-6813 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-F5-6814                  TCGA-F5-6861 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-F5-6863                  TCGA-F5-6864 
  "DEL PEAK 13(6Q26) MUTATED" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-G5-6233                  TCGA-G5-6235 
  "DEL PEAK 13(6Q26) MUTATED" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-G5-6572                  TCGA-G5-6641 
"DEL PEAK 13(6Q26) WILD-TYPE"   "DEL PEAK 13(6Q26) MUTATED" 
[1] "hr=" "3.1"
D38V2, continuous
                             vv
clus                          STAGE I STAGE II STAGE IIA STAGE IIB STAGE IIC
  DEL PEAK 13(6Q26) MUTATED         5        2         9         0         1
  DEL PEAK 13(6Q26) WILD-TYPE      25        6        29         2         1
                             vv
clus                          STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  DEL PEAK 13(6Q26) MUTATED           0          1          2          5
  DEL PEAK 13(6Q26) WILD-TYPE         5          8         21          9
                             vv
clus                          STAGE IV STAGE IVA
  DEL PEAK 13(6Q26) MUTATED          3         0
  DEL PEAK 13(6Q26) WILD-TYPE       14         9
D38V3, multiclass
                             vv
clus                          T1 T2 T3 T4
  DEL PEAK 13(6Q26) MUTATED    3  3 21  3
  DEL PEAK 13(6Q26) WILD-TYPE  6 26 88 11
D38V4, multiclass
    clus
vv   DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  T1                         3                           6
  T2                         3                          26
  T3                        21                          88
  T4                         3                          11
                             vv
clus                          N0 N1 N2
  DEL PEAK 13(6Q26) MUTATED   16  4  9
  DEL PEAK 13(6Q26) WILD-TYPE 67 41 23
D38V5, multiclass
    clus
vv   DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  N0                        16                          67
  N1                         4                          41
  N2                         9                          23
                             vv
clus                           M0  M1 M1A  MX
  DEL PEAK 13(6Q26) MUTATED    22   4   0   4
  DEL PEAK 13(6Q26) WILD-TYPE 101  18   2   9
D38V6, multiclass
     clus
vv    DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  M0                         22                         101
  M1                          4                          18
  M1A                         0                           2
  MX                          4                           9
D38V7, binary
                             cls
clus                           0  1
  DEL PEAK 13(6Q26) MUTATED   10 20
  DEL PEAK 13(6Q26) WILD-TYPE 64 68
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 13(6Q26) MUTATED     10   20
  DEL PEAK 13(6Q26) WILD-TYPE   64   68
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  FEMALE                        10                          64
  MALE                          20                          68
D38V8, binary
                             cls
clus                            0   1
  DEL PEAK 13(6Q26) MUTATED    22   6
  DEL PEAK 13(6Q26) WILD-TYPE 121   7
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 13(6Q26) MUTATED     22    6
  DEL PEAK 13(6Q26) WILD-TYPE  121    7
                                clus
vv                               DEL PEAK 13(6Q26) MUTATED
  RECTAL ADENOCARCINOMA                                 22
  RECTAL MUCINOUS ADENOCARCINOMA                         6
                                clus
vv                               DEL PEAK 13(6Q26) WILD-TYPE
  RECTAL ADENOCARCINOMA                                  121
  RECTAL MUCINOUS ADENOCARCINOMA                           7
D38V9, binary
                             cls
clus                            0   1
  DEL PEAK 13(6Q26) MUTATED     2  28
  DEL PEAK 13(6Q26) WILD-TYPE   4 128
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 13(6Q26) MUTATED      2   28
  DEL PEAK 13(6Q26) WILD-TYPE    4  128
     clus
vv    DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  NO                          2                           4
  YES                        28                         128
                             vv
clus                           R0  R1  R2  RX
  DEL PEAK 13(6Q26) MUTATED    21   0   3   1
  DEL PEAK 13(6Q26) WILD-TYPE 100   2   9   2
D38V10, multiclass
    clus
vv   DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  R0                        21                         100
  R1                         0                           2
  R2                         3                           9
  RX                         1                           2
D38V11, continuous

Clustering(39) Variable = DEL PEAK 14(7Q31.1) MUTATION ANALYSIS
D39V1, survival
                               sevent
clus2                             0   1
  DEL PEAK 14(7Q31.1) MUTATED     2   0
  DEL PEAK 14(7Q31.1) WILD-TYPE 115  13
  DEL PEAK 14(7Q31.1) MUTATED DEL PEAK 14(7Q31.1) WILD-TYPE 
                            2                           128 
  DEL PEAK 14(7Q31.1) MUTATED DEL PEAK 14(7Q31.1) WILD-TYPE 
                            0                            13 
$`DEL PEAK 14(7Q31.1) MUTATED`
TCGA-AG-A008 TCGA-DC-6682 
       13.91        13.02 

$`DEL PEAK 14(7Q31.1) WILD-TYPE`
TCGA-AF-2687 TCGA-AF-2689 TCGA-AF-2690 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-2693 
       24.13        17.95        17.23        10.62        13.55        19.10 
TCGA-AF-3400 TCGA-AF-3911 TCGA-AF-3913 TCGA-AF-4110 TCGA-AF-5654 TCGA-AF-6136 
       12.72        25.02        10.39        14.50         8.45        15.35 
TCGA-AF-6655 TCGA-AF-6672 TCGA-AG-3575 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 
       11.67        10.39        12.00         1.02         1.02         2.01 
TCGA-AG-3586 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3605 TCGA-AG-3726 TCGA-AG-3727 
        1.02         1.02         0.99         0.99         7.96         0.95 
TCGA-AG-3731 TCGA-AG-3742 TCGA-AG-3878 TCGA-AG-3883 TCGA-AG-3887 TCGA-AG-3892 
        1.02         0.99         0.99         1.02         0.92         1.02 
TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3896 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 
        0.99         0.99         1.02         1.02         1.02         1.02 
TCGA-AG-4008 TCGA-AG-4022 TCGA-AG-A002 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y 
        1.02         0.99        20.94         6.02        25.94        23.01 
TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01J TCGA-AG-A01L 
       17.03        15.91        13.02         1.02         1.02        12.00 
TCGA-AG-A01N TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A023 TCGA-AG-A025 
       12.00        70.03        63.98        10.98        51.98        49.94 
TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AH-6544 
        1.94        38.93        61.94        40.96        38.01         0.49 
TCGA-AH-6547 TCGA-AH-6643 TCGA-AH-6644 TCGA-AH-6897 TCGA-AH-6903 TCGA-BM-6198 
        1.45         0.69         0.72         4.60         1.81        10.19 
TCGA-CI-6619 TCGA-CI-6620 TCGA-CI-6622 TCGA-CI-6623 TCGA-CI-6624 TCGA-CL-4957 
        6.02         6.02         6.94         9.37         4.70        13.97 
TCGA-CL-5917 TCGA-CL-5918 TCGA-DC-4745 TCGA-DC-4749 TCGA-DC-5337 TCGA-DC-5869 
       60.00         7.99        10.98        11.01        15.02        12.99 
TCGA-DC-6154 TCGA-DC-6155 TCGA-DC-6156 TCGA-DC-6157 TCGA-DC-6158 TCGA-DC-6160 
       12.00        14.01        15.02        36.00         6.97        30.05 
TCGA-DC-6681 TCGA-DC-6683 TCGA-DT-5265 TCGA-DY-A0XA TCGA-DY-A1DC TCGA-DY-A1DD 
       12.95        10.06         5.29       126.41        41.33        57.24 
TCGA-DY-A1DE TCGA-DY-A1DF TCGA-DY-A1DG TCGA-DY-A1H8 TCGA-EF-5830 TCGA-EF-5831 
      129.27        24.13        51.48        32.58         0.49         2.40 
TCGA-EI-6506 TCGA-EI-6507 TCGA-EI-6508 TCGA-EI-6509 TCGA-EI-6510 TCGA-EI-6511 
       20.55        19.96        20.91        17.00        18.28        15.85 
TCGA-EI-6512 TCGA-EI-6513 TCGA-EI-6514 TCGA-EI-6881 TCGA-EI-6882 TCGA-EI-6883 
       17.69        16.34        16.31        16.37         8.61        11.51 
TCGA-EI-6884 TCGA-EI-6885 TCGA-EI-6917 TCGA-EI-7002 TCGA-EI-7004 TCGA-F5-6465 
       10.78        13.61        17.46        11.97         8.45         3.39 
TCGA-F5-6571 TCGA-F5-6702 TCGA-F5-6810 TCGA-F5-6811 TCGA-F5-6812 TCGA-F5-6813 
        0.85         2.17         0.39         1.02         0.66         0.69 
TCGA-F5-6814 TCGA-F5-6861 TCGA-F5-6863 TCGA-F5-6864 TCGA-G5-6233 TCGA-G5-6235 
        0.53         1.08         0.76         0.46        18.25        55.76 
TCGA-G5-6572 TCGA-G5-6641 
       47.08        26.43 

  DEL PEAK 14(7Q31.1) MUTATED DEL PEAK 14(7Q31.1) WILD-TYPE 
                        13.02                          0.39 
  DEL PEAK 14(7Q31.1) MUTATED DEL PEAK 14(7Q31.1) WILD-TYPE 
                        13.91                        129.27 
  DEL PEAK 14(7Q31.1) MUTATED DEL PEAK 14(7Q31.1) WILD-TYPE 
                       13.465                        10.980 
[1] "13.0 - 13.9 (13.5)" "0.4 - 129.3 (11.0)"
                   TCGA-AF-2687                    TCGA-AF-2689 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AF-2692                    TCGA-AF-2693 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AF-3400                    TCGA-AF-3911 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AF-3913                    TCGA-AF-4110 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3575                    TCGA-AG-3581 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3582                    TCGA-AG-3583 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3586                    TCGA-AG-3587 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3599                    TCGA-AG-3605 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3726                    TCGA-AG-3727 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3731                    TCGA-AG-3742 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3878                    TCGA-AG-3883 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3896                    TCGA-AG-3999 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-4001                    TCGA-AG-4007 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-4008                    TCGA-AG-4022 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A002                    TCGA-AG-A008 
"DEL PEAK 14(7Q31.1) WILD-TYPE"   "DEL PEAK 14(7Q31.1) MUTATED" 
                   TCGA-AG-A00C                    TCGA-AG-A00H 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A00Y                    TCGA-AG-A011 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A014                    TCGA-AG-A015 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A016                    TCGA-AG-A01J 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A01L                    TCGA-AG-A01N 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A01W                    TCGA-AG-A01Y 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A020                    TCGA-AG-A023 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A025                    TCGA-AG-A026 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A02G                    TCGA-AG-A02N 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A02X                    TCGA-AG-A032 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AH-6544                    TCGA-AH-6547 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AH-6643                    TCGA-AH-6644 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AH-6897                    TCGA-AH-6903 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-BM-6198                    TCGA-CI-6619 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CI-6620                    TCGA-CI-6622 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CI-6623                    TCGA-CI-6624 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CL-4957                    TCGA-CL-5917 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CL-5918                    TCGA-DC-4745 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DC-4749                    TCGA-DC-5337 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DC-5869                    TCGA-DC-6154 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DC-6155                    TCGA-DC-6156 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DC-6157                    TCGA-DC-6158 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DC-6160                    TCGA-DC-6681 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DC-6682                    TCGA-DC-6683 
  "DEL PEAK 14(7Q31.1) MUTATED" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DT-5265                    TCGA-DY-A0XA 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DY-A1DC                    TCGA-DY-A1DD 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DY-A1DE                    TCGA-DY-A1DF 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DY-A1DG                    TCGA-DY-A1H8 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EF-5830                    TCGA-EF-5831 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6506                    TCGA-EI-6507 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6508                    TCGA-EI-6509 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6510                    TCGA-EI-6511 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6512                    TCGA-EI-6513 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6514                    TCGA-EI-6881 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6882                    TCGA-EI-6883 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6884                    TCGA-EI-6885 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6917                    TCGA-EI-7002 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-7004                    TCGA-F5-6465 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-F5-6571                    TCGA-F5-6702 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-F5-6810                    TCGA-F5-6811 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-F5-6812                    TCGA-F5-6813 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-F5-6814                    TCGA-F5-6861 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-F5-6863                    TCGA-F5-6864 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-G5-6233                    TCGA-G5-6235 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-G5-6572                    TCGA-G5-6641 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AF-2687                    TCGA-AF-2689 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AF-2692                    TCGA-AF-2693 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AF-3400                    TCGA-AF-3911 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AF-3913                    TCGA-AF-4110 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3575                    TCGA-AG-3581 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3582                    TCGA-AG-3583 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3586                    TCGA-AG-3587 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3599                    TCGA-AG-3605 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3726                    TCGA-AG-3727 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3731                    TCGA-AG-3742 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3878                    TCGA-AG-3883 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3896                    TCGA-AG-3999 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-4001                    TCGA-AG-4007 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-4008                    TCGA-AG-4022 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A002                    TCGA-AG-A008 
"DEL PEAK 14(7Q31.1) WILD-TYPE"   "DEL PEAK 14(7Q31.1) MUTATED" 
                   TCGA-AG-A00C                    TCGA-AG-A00H 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A00Y                    TCGA-AG-A011 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A014                    TCGA-AG-A015 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A016                    TCGA-AG-A01J 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A01L                    TCGA-AG-A01N 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A01W                    TCGA-AG-A01Y 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A020                    TCGA-AG-A023 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A025                    TCGA-AG-A026 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A02G                    TCGA-AG-A02N 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A02X                    TCGA-AG-A032 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AH-6544                    TCGA-AH-6547 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AH-6643                    TCGA-AH-6644 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AH-6897                    TCGA-AH-6903 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-BM-6198                    TCGA-CI-6619 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CI-6620                    TCGA-CI-6622 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CI-6623                    TCGA-CI-6624 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CL-4957                    TCGA-CL-5917 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CL-5918                    TCGA-DC-4745 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DC-4749                    TCGA-DC-5337 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DC-5869                    TCGA-DC-6154 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DC-6155                    TCGA-DC-6156 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DC-6157                    TCGA-DC-6158 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DC-6160                    TCGA-DC-6681 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DC-6682                    TCGA-DC-6683 
  "DEL PEAK 14(7Q31.1) MUTATED" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DT-5265                    TCGA-DY-A0XA 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DY-A1DC                    TCGA-DY-A1DD 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DY-A1DE                    TCGA-DY-A1DF 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DY-A1DG                    TCGA-DY-A1H8 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EF-5830                    TCGA-EF-5831 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6506                    TCGA-EI-6507 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6508                    TCGA-EI-6509 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6510                    TCGA-EI-6511 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6512                    TCGA-EI-6513 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6514                    TCGA-EI-6881 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6882                    TCGA-EI-6883 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6884                    TCGA-EI-6885 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6917                    TCGA-EI-7002 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-7004                    TCGA-F5-6465 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-F5-6571                    TCGA-F5-6702 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-F5-6810                    TCGA-F5-6811 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-F5-6812                    TCGA-F5-6813 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-F5-6814                    TCGA-F5-6861 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-F5-6863                    TCGA-F5-6864 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-G5-6233                    TCGA-G5-6235 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-G5-6572                    TCGA-G5-6641 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AF-2687                    TCGA-AF-2689 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AF-2692                    TCGA-AF-2693 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AF-3400                    TCGA-AF-3911 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AF-3913                    TCGA-AF-4110 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3575                    TCGA-AG-3581 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3582                    TCGA-AG-3583 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3586                    TCGA-AG-3587 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3599                    TCGA-AG-3605 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3726                    TCGA-AG-3727 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3731                    TCGA-AG-3742 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3878                    TCGA-AG-3883 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3896                    TCGA-AG-3999 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-4001                    TCGA-AG-4007 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-4008                    TCGA-AG-4022 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A002                    TCGA-AG-A008 
"DEL PEAK 14(7Q31.1) WILD-TYPE"   "DEL PEAK 14(7Q31.1) MUTATED" 
                   TCGA-AG-A00C                    TCGA-AG-A00H 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A00Y                    TCGA-AG-A011 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A014                    TCGA-AG-A015 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A016                    TCGA-AG-A01J 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A01L                    TCGA-AG-A01N 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A01W                    TCGA-AG-A01Y 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A020                    TCGA-AG-A023 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A025                    TCGA-AG-A026 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A02G                    TCGA-AG-A02N 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A02X                    TCGA-AG-A032 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AH-6544                    TCGA-AH-6547 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AH-6643                    TCGA-AH-6644 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AH-6897                    TCGA-AH-6903 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-BM-6198                    TCGA-CI-6619 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CI-6620                    TCGA-CI-6622 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CI-6623                    TCGA-CI-6624 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CL-4957                    TCGA-CL-5917 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CL-5918                    TCGA-DC-4745 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DC-4749                    TCGA-DC-5337 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DC-5869                    TCGA-DC-6154 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DC-6155                    TCGA-DC-6156 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DC-6157                    TCGA-DC-6158 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DC-6160                    TCGA-DC-6681 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DC-6682                    TCGA-DC-6683 
  "DEL PEAK 14(7Q31.1) MUTATED" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DT-5265                    TCGA-DY-A0XA 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DY-A1DC                    TCGA-DY-A1DD 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DY-A1DE                    TCGA-DY-A1DF 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DY-A1DG                    TCGA-DY-A1H8 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EF-5830                    TCGA-EF-5831 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6506                    TCGA-EI-6507 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6508                    TCGA-EI-6509 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6510                    TCGA-EI-6511 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6512                    TCGA-EI-6513 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6514                    TCGA-EI-6881 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6882                    TCGA-EI-6883 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6884                    TCGA-EI-6885 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6917                    TCGA-EI-7002 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-7004                    TCGA-F5-6465 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-F5-6571                    TCGA-F5-6702 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-F5-6810                    TCGA-F5-6811 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-F5-6812                    TCGA-F5-6813 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-F5-6814                    TCGA-F5-6861 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-F5-6863                    TCGA-F5-6864 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-G5-6233                    TCGA-G5-6235 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-G5-6572                    TCGA-G5-6641 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
[1] "Remove cluster labels:"      "DEL PEAK 14(7Q31.1) MUTATED"
clus
  DEL PEAK 14(7Q31.1) MUTATED DEL PEAK 14(7Q31.1) WILD-TYPE 
                            2                           128 
                   TCGA-AF-2687                    TCGA-AF-2689 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AF-2692                    TCGA-AF-2693 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AF-3400                    TCGA-AF-3911 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AF-3913                    TCGA-AF-4110 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3575                    TCGA-AG-3581 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3582                    TCGA-AG-3583 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3586                    TCGA-AG-3587 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3599                    TCGA-AG-3605 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3726                    TCGA-AG-3727 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3731                    TCGA-AG-3742 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3878                    TCGA-AG-3883 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3896                    TCGA-AG-3999 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-4001                    TCGA-AG-4007 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-4008                    TCGA-AG-4022 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A002                    TCGA-AG-A00C 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A00H                    TCGA-AG-A00Y 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A011                    TCGA-AG-A014 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A015                    TCGA-AG-A016 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A01J                    TCGA-AG-A01L 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A01N                    TCGA-AG-A01W 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A01Y                    TCGA-AG-A020 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A023                    TCGA-AG-A025 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A026                    TCGA-AG-A02G 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A02N                    TCGA-AG-A02X 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A032                    TCGA-AH-6544 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AH-6547                    TCGA-AH-6643 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AH-6644                    TCGA-AH-6897 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AH-6903                    TCGA-BM-6198 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CI-6619                    TCGA-CI-6620 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CI-6622                    TCGA-CI-6623 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CI-6624                    TCGA-CL-4957 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CL-5917                    TCGA-CL-5918 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DC-4745                    TCGA-DC-4749 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DC-5337                    TCGA-DC-5869 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DC-6154                    TCGA-DC-6155 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DC-6156                    TCGA-DC-6157 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DC-6158                    TCGA-DC-6160 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DC-6681                    TCGA-DC-6683 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DT-5265                    TCGA-DY-A0XA 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DY-A1DC                    TCGA-DY-A1DD 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DY-A1DE                    TCGA-DY-A1DF 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DY-A1DG                    TCGA-DY-A1H8 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EF-5830                    TCGA-EF-5831 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6506                    TCGA-EI-6507 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6508                    TCGA-EI-6509 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6510                    TCGA-EI-6511 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6512                    TCGA-EI-6513 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6514                    TCGA-EI-6881 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6882                    TCGA-EI-6883 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6884                    TCGA-EI-6885 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6917                    TCGA-EI-7002 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-7004                    TCGA-F5-6465 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-F5-6571                    TCGA-F5-6702 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-F5-6810                    TCGA-F5-6811 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-F5-6812                    TCGA-F5-6813 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-F5-6814                    TCGA-F5-6861 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-F5-6863                    TCGA-F5-6864 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-G5-6233                    TCGA-G5-6235 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-G5-6572                    TCGA-G5-6641 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
D39V2, continuous
                               vv
clus                            STAGE I STAGE II STAGE IIA STAGE IIB STAGE IIC
  DEL PEAK 14(7Q31.1) MUTATED         1        0         2         0         0
  DEL PEAK 14(7Q31.1) WILD-TYPE      29        8        36         2         2
                               vv
clus                            STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  DEL PEAK 14(7Q31.1) MUTATED           0          0          0          1
  DEL PEAK 14(7Q31.1) WILD-TYPE         5          9         23         13
                               vv
clus                            STAGE IV STAGE IVA
  DEL PEAK 14(7Q31.1) MUTATED          0         0
  DEL PEAK 14(7Q31.1) WILD-TYPE       17         9
D39V3, multiclass
                               vv
clus                             T1  T2  T3  T4
  DEL PEAK 14(7Q31.1) MUTATED     0   1   3   0
  DEL PEAK 14(7Q31.1) WILD-TYPE   9  28 106  14
D39V4, multiclass
    clus
vv   DEL PEAK 14(7Q31.1) MUTATED DEL PEAK 14(7Q31.1) WILD-TYPE
  T1                           0                             9
  T2                           1                            28
  T3                           3                           106
  T4                           0                            14
                               vv
clus                            N0 N1 N2
  DEL PEAK 14(7Q31.1) MUTATED    3  0  1
  DEL PEAK 14(7Q31.1) WILD-TYPE 80 45 31
D39V5, multiclass
    clus
vv   DEL PEAK 14(7Q31.1) MUTATED DEL PEAK 14(7Q31.1) WILD-TYPE
  N0                           3                            80
  N1                           0                            45
  N2                           1                            31
                               vv
clus                             M0  M1 M1A  MX
  DEL PEAK 14(7Q31.1) MUTATED     4   0   0   0
  DEL PEAK 14(7Q31.1) WILD-TYPE 119  22   2  13
D39V6, multiclass
     clus
vv    DEL PEAK 14(7Q31.1) MUTATED DEL PEAK 14(7Q31.1) WILD-TYPE
  M0                            4                           119
  M1                            0                            22
  M1A                           0                             2
  MX                            0                            13
D39V7, binary
                               cls
clus                             0  1
  DEL PEAK 14(7Q31.1) MUTATED    2  2
  DEL PEAK 14(7Q31.1) WILD-TYPE 72 86
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 14(7Q31.1) MUTATED      2    2
  DEL PEAK 14(7Q31.1) WILD-TYPE   72   86
        clus
vv       DEL PEAK 14(7Q31.1) MUTATED DEL PEAK 14(7Q31.1) WILD-TYPE
  FEMALE                           2                            72
  MALE                             2                            86
D39V8, binary
                               cls
clus                              0   1
  DEL PEAK 14(7Q31.1) MUTATED     3   1
  DEL PEAK 14(7Q31.1) WILD-TYPE 140  12
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 14(7Q31.1) MUTATED      3    1
  DEL PEAK 14(7Q31.1) WILD-TYPE  140   12
                                clus
vv                               DEL PEAK 14(7Q31.1) MUTATED
  RECTAL ADENOCARCINOMA                                    3
  RECTAL MUCINOUS ADENOCARCINOMA                           1
                                clus
vv                               DEL PEAK 14(7Q31.1) WILD-TYPE
  RECTAL ADENOCARCINOMA                                    140
  RECTAL MUCINOUS ADENOCARCINOMA                            12
D39V9, binary
                               cls
clus                              0   1
  DEL PEAK 14(7Q31.1) MUTATED     0   4
  DEL PEAK 14(7Q31.1) WILD-TYPE   6 152
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 14(7Q31.1) MUTATED      0    4
  DEL PEAK 14(7Q31.1) WILD-TYPE    6  152
     clus
vv    DEL PEAK 14(7Q31.1) MUTATED DEL PEAK 14(7Q31.1) WILD-TYPE
  NO                            0                             6
  YES                           4                           152
                               vv
clus                             R0  R1  R2  RX
  DEL PEAK 14(7Q31.1) MUTATED     4   0   0   0
  DEL PEAK 14(7Q31.1) WILD-TYPE 117   2  12   3
D39V10, multiclass
    clus
vv   DEL PEAK 14(7Q31.1) MUTATED DEL PEAK 14(7Q31.1) WILD-TYPE
  R0                           4                           117
  R1                           0                             2
  R2                           0                            12
  RX                           0                             3
D39V11, continuous

Clustering(40) Variable = DEL PEAK 15(8P23.2) MUTATION ANALYSIS
D40V1, survival
                               sevent
clus2                            0  1
  DEL PEAK 15(8P23.2) MUTATED   69  9
  DEL PEAK 15(8P23.2) WILD-TYPE 48  4
  DEL PEAK 15(8P23.2) MUTATED DEL PEAK 15(8P23.2) WILD-TYPE 
                           78                            52 
  DEL PEAK 15(8P23.2) MUTATED DEL PEAK 15(8P23.2) WILD-TYPE 
                            9                             4 
$`DEL PEAK 15(8P23.2) MUTATED`
TCGA-AF-2689 TCGA-AF-2690 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-2693 TCGA-AF-3400 
       17.95        17.23        10.62        13.55        19.10        12.72 
TCGA-AF-3911 TCGA-AF-3913 TCGA-AF-6136 TCGA-AF-6655 TCGA-AF-6672 TCGA-AG-3582 
       25.02        10.39        15.35        11.67        10.39         1.02 
TCGA-AG-3586 TCGA-AG-3587 TCGA-AG-3605 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3742 
        1.02         1.02         0.99         7.96         0.95         0.99 
TCGA-AG-3883 TCGA-AG-3893 TCGA-AG-3896 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 
        1.02         0.99         1.02         1.02         1.02         1.02 
TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A014 TCGA-AG-A016 
        1.02        20.94        25.94        23.01        15.91         1.02 
TCGA-AG-A01J TCGA-AG-A01L TCGA-AG-A01N TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 
        1.02        12.00        12.00        70.03        63.98        10.98 
TCGA-AG-A023 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02X TCGA-AH-6547 TCGA-AH-6644 
       51.98         1.94        38.93        40.96         1.45         0.72 
TCGA-BM-6198 TCGA-CI-6624 TCGA-CL-4957 TCGA-CL-5917 TCGA-DC-4745 TCGA-DC-4749 
       10.19         4.70        13.97        60.00        10.98        11.01 
TCGA-DC-5869 TCGA-DC-6155 TCGA-DC-6156 TCGA-DC-6157 TCGA-DC-6158 TCGA-DC-6682 
       12.99        14.01        15.02        36.00         6.97        13.02 
TCGA-DC-6683 TCGA-DT-5265 TCGA-DY-A0XA TCGA-DY-A1DC TCGA-DY-A1DD TCGA-DY-A1DE 
       10.06         5.29       126.41        41.33        57.24       129.27 
TCGA-EF-5830 TCGA-EF-5831 TCGA-EI-6511 TCGA-EI-6513 TCGA-EI-6883 TCGA-EI-6884 
        0.49         2.40        15.85        16.34        11.51        10.78 
TCGA-EI-6885 TCGA-EI-7002 TCGA-EI-7004 TCGA-F5-6571 TCGA-F5-6702 TCGA-F5-6810 
       13.61        11.97         8.45         0.85         2.17         0.39 
TCGA-F5-6812 TCGA-F5-6813 TCGA-F5-6863 TCGA-F5-6864 TCGA-G5-6233 TCGA-G5-6641 
        0.66         0.69         0.76         0.46        18.25        26.43 

$`DEL PEAK 15(8P23.2) WILD-TYPE`
TCGA-AF-2687 TCGA-AF-4110 TCGA-AF-5654 TCGA-AG-3575 TCGA-AG-3581 TCGA-AG-3583 
       24.13        14.50         8.45        12.00         1.02         2.01 
TCGA-AG-3599 TCGA-AG-3731 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3894 
        0.99         1.02         0.99         0.92         1.02         0.99 
TCGA-AG-4022 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A011 TCGA-AG-A015 TCGA-AG-A025 
        0.99        13.91         6.02        17.03        13.02        49.94 
TCGA-AG-A02N TCGA-AG-A032 TCGA-AH-6544 TCGA-AH-6643 TCGA-AH-6897 TCGA-AH-6903 
       61.94        38.01         0.49         0.69         4.60         1.81 
TCGA-CI-6619 TCGA-CI-6620 TCGA-CI-6622 TCGA-CI-6623 TCGA-CL-5918 TCGA-DC-5337 
        6.02         6.02         6.94         9.37         7.99        15.02 
TCGA-DC-6154 TCGA-DC-6160 TCGA-DC-6681 TCGA-DY-A1DF TCGA-DY-A1DG TCGA-DY-A1H8 
       12.00        30.05        12.95        24.13        51.48        32.58 
TCGA-EI-6506 TCGA-EI-6507 TCGA-EI-6508 TCGA-EI-6509 TCGA-EI-6510 TCGA-EI-6512 
       20.55        19.96        20.91        17.00        18.28        17.69 
TCGA-EI-6514 TCGA-EI-6881 TCGA-EI-6882 TCGA-EI-6917 TCGA-F5-6465 TCGA-F5-6811 
       16.31        16.37         8.61        17.46         3.39         1.02 
TCGA-F5-6814 TCGA-F5-6861 TCGA-G5-6235 TCGA-G5-6572 
        0.53         1.08        55.76        47.08 

  DEL PEAK 15(8P23.2) MUTATED DEL PEAK 15(8P23.2) WILD-TYPE 
                         0.39                          0.49 
  DEL PEAK 15(8P23.2) MUTATED DEL PEAK 15(8P23.2) WILD-TYPE 
                       129.27                         61.94 
  DEL PEAK 15(8P23.2) MUTATED DEL PEAK 15(8P23.2) WILD-TYPE 
                        10.98                         12.00 
[1] "0.4 - 129.3 (11.0)" "0.5 - 61.9 (12.0)" 
                   TCGA-AF-2687                    TCGA-AF-2689 
"DEL PEAK 15(8P23.2) WILD-TYPE"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-AF-2690                    TCGA-AF-2691 
  "DEL PEAK 15(8P23.2) MUTATED"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-AF-2692                    TCGA-AF-2693 
  "DEL PEAK 15(8P23.2) MUTATED"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-AF-3400                    TCGA-AF-3911 
  "DEL PEAK 15(8P23.2) MUTATED"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-AF-3913                    TCGA-AF-4110 
  "DEL PEAK 15(8P23.2) MUTATED" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"DEL PEAK 15(8P23.2) WILD-TYPE"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-AF-6655                    TCGA-AF-6672 
  "DEL PEAK 15(8P23.2) MUTATED"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-AG-3575                    TCGA-AG-3581 
"DEL PEAK 15(8P23.2) WILD-TYPE" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-AG-3582                    TCGA-AG-3583 
  "DEL PEAK 15(8P23.2) MUTATED" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-AG-3586                    TCGA-AG-3587 
  "DEL PEAK 15(8P23.2) MUTATED"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-AG-3599                    TCGA-AG-3605 
"DEL PEAK 15(8P23.2) WILD-TYPE"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-AG-3726                    TCGA-AG-3727 
  "DEL PEAK 15(8P23.2) MUTATED"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-AG-3731                    TCGA-AG-3742 
"DEL PEAK 15(8P23.2) WILD-TYPE"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-AG-3878                    TCGA-AG-3883 
"DEL PEAK 15(8P23.2) WILD-TYPE"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"DEL PEAK 15(8P23.2) WILD-TYPE" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
  "DEL PEAK 15(8P23.2) MUTATED" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-AG-3896                    TCGA-AG-3999 
  "DEL PEAK 15(8P23.2) MUTATED"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-AG-4001                    TCGA-AG-4007 
  "DEL PEAK 15(8P23.2) MUTATED"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-AG-4008                    TCGA-AG-4022 
  "DEL PEAK 15(8P23.2) MUTATED" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-AG-A002                    TCGA-AG-A008 
  "DEL PEAK 15(8P23.2) MUTATED" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-AG-A00C                    TCGA-AG-A00H 
"DEL PEAK 15(8P23.2) WILD-TYPE"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-AG-A00Y                    TCGA-AG-A011 
  "DEL PEAK 15(8P23.2) MUTATED" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-AG-A014                    TCGA-AG-A015 
  "DEL PEAK 15(8P23.2) MUTATED" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-AG-A016                    TCGA-AG-A01J 
  "DEL PEAK 15(8P23.2) MUTATED"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-AG-A01L                    TCGA-AG-A01N 
  "DEL PEAK 15(8P23.2) MUTATED"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-AG-A01W                    TCGA-AG-A01Y 
  "DEL PEAK 15(8P23.2) MUTATED"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-AG-A020                    TCGA-AG-A023 
  "DEL PEAK 15(8P23.2) MUTATED"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-AG-A025                    TCGA-AG-A026 
"DEL PEAK 15(8P23.2) WILD-TYPE"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-AG-A02G                    TCGA-AG-A02N 
  "DEL PEAK 15(8P23.2) MUTATED" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-AG-A02X                    TCGA-AG-A032 
  "DEL PEAK 15(8P23.2) MUTATED" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-AH-6544                    TCGA-AH-6547 
"DEL PEAK 15(8P23.2) WILD-TYPE"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-AH-6643                    TCGA-AH-6644 
"DEL PEAK 15(8P23.2) WILD-TYPE"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-AH-6897                    TCGA-AH-6903 
"DEL PEAK 15(8P23.2) WILD-TYPE" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-BM-6198                    TCGA-CI-6619 
  "DEL PEAK 15(8P23.2) MUTATED" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-CI-6620                    TCGA-CI-6622 
"DEL PEAK 15(8P23.2) WILD-TYPE" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-CI-6623                    TCGA-CI-6624 
"DEL PEAK 15(8P23.2) WILD-TYPE"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-CL-4957                    TCGA-CL-5917 
  "DEL PEAK 15(8P23.2) MUTATED"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-CL-5918                    TCGA-DC-4745 
"DEL PEAK 15(8P23.2) WILD-TYPE"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-DC-4749                    TCGA-DC-5337 
  "DEL PEAK 15(8P23.2) MUTATED" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-DC-5869                    TCGA-DC-6154 
  "DEL PEAK 15(8P23.2) MUTATED" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-DC-6155                    TCGA-DC-6156 
  "DEL PEAK 15(8P23.2) MUTATED"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-DC-6157                    TCGA-DC-6158 
  "DEL PEAK 15(8P23.2) MUTATED"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-DC-6160                    TCGA-DC-6681 
"DEL PEAK 15(8P23.2) WILD-TYPE" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-DC-6682                    TCGA-DC-6683 
  "DEL PEAK 15(8P23.2) MUTATED"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-DT-5265                    TCGA-DY-A0XA 
  "DEL PEAK 15(8P23.2) MUTATED"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-DY-A1DC                    TCGA-DY-A1DD 
  "DEL PEAK 15(8P23.2) MUTATED"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-DY-A1DE                    TCGA-DY-A1DF 
  "DEL PEAK 15(8P23.2) MUTATED" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-DY-A1DG                    TCGA-DY-A1H8 
"DEL PEAK 15(8P23.2) WILD-TYPE" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-EF-5830                    TCGA-EF-5831 
  "DEL PEAK 15(8P23.2) MUTATED"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-EI-6506                    TCGA-EI-6507 
"DEL PEAK 15(8P23.2) WILD-TYPE" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-EI-6508                    TCGA-EI-6509 
"DEL PEAK 15(8P23.2) WILD-TYPE" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-EI-6510                    TCGA-EI-6511 
"DEL PEAK 15(8P23.2) WILD-TYPE"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-EI-6512                    TCGA-EI-6513 
"DEL PEAK 15(8P23.2) WILD-TYPE"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-EI-6514                    TCGA-EI-6881 
"DEL PEAK 15(8P23.2) WILD-TYPE" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-EI-6882                    TCGA-EI-6883 
"DEL PEAK 15(8P23.2) WILD-TYPE"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-EI-6884                    TCGA-EI-6885 
  "DEL PEAK 15(8P23.2) MUTATED"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-EI-6917                    TCGA-EI-7002 
"DEL PEAK 15(8P23.2) WILD-TYPE"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-EI-7004                    TCGA-F5-6465 
  "DEL PEAK 15(8P23.2) MUTATED" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-F5-6571                    TCGA-F5-6702 
  "DEL PEAK 15(8P23.2) MUTATED"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-F5-6810                    TCGA-F5-6811 
  "DEL PEAK 15(8P23.2) MUTATED" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-F5-6812                    TCGA-F5-6813 
  "DEL PEAK 15(8P23.2) MUTATED"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-F5-6814                    TCGA-F5-6861 
"DEL PEAK 15(8P23.2) WILD-TYPE" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-F5-6863                    TCGA-F5-6864 
  "DEL PEAK 15(8P23.2) MUTATED"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-G5-6233                    TCGA-G5-6235 
  "DEL PEAK 15(8P23.2) MUTATED" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-G5-6572                    TCGA-G5-6641 
"DEL PEAK 15(8P23.2) WILD-TYPE"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-AF-2687                    TCGA-AF-2689 
"DEL PEAK 15(8P23.2) WILD-TYPE"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-AF-2690                    TCGA-AF-2691 
  "DEL PEAK 15(8P23.2) MUTATED"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-AF-2692                    TCGA-AF-2693 
  "DEL PEAK 15(8P23.2) MUTATED"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-AF-3400                    TCGA-AF-3911 
  "DEL PEAK 15(8P23.2) MUTATED"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-AF-3913                    TCGA-AF-4110 
  "DEL PEAK 15(8P23.2) MUTATED" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"DEL PEAK 15(8P23.2) WILD-TYPE"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-AF-6655                    TCGA-AF-6672 
  "DEL PEAK 15(8P23.2) MUTATED"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-AG-3575                    TCGA-AG-3581 
"DEL PEAK 15(8P23.2) WILD-TYPE" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-AG-3582                    TCGA-AG-3583 
  "DEL PEAK 15(8P23.2) MUTATED" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-AG-3586                    TCGA-AG-3587 
  "DEL PEAK 15(8P23.2) MUTATED"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-AG-3599                    TCGA-AG-3605 
"DEL PEAK 15(8P23.2) WILD-TYPE"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-AG-3726                    TCGA-AG-3727 
  "DEL PEAK 15(8P23.2) MUTATED"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-AG-3731                    TCGA-AG-3742 
"DEL PEAK 15(8P23.2) WILD-TYPE"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-AG-3878                    TCGA-AG-3883 
"DEL PEAK 15(8P23.2) WILD-TYPE"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"DEL PEAK 15(8P23.2) WILD-TYPE" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
  "DEL PEAK 15(8P23.2) MUTATED" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-AG-3896                    TCGA-AG-3999 
  "DEL PEAK 15(8P23.2) MUTATED"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-AG-4001                    TCGA-AG-4007 
  "DEL PEAK 15(8P23.2) MUTATED"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-AG-4008                    TCGA-AG-4022 
  "DEL PEAK 15(8P23.2) MUTATED" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-AG-A002                    TCGA-AG-A008 
  "DEL PEAK 15(8P23.2) MUTATED" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-AG-A00C                    TCGA-AG-A00H 
"DEL PEAK 15(8P23.2) WILD-TYPE"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-AG-A00Y                    TCGA-AG-A011 
  "DEL PEAK 15(8P23.2) MUTATED" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-AG-A014                    TCGA-AG-A015 
  "DEL PEAK 15(8P23.2) MUTATED" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-AG-A016                    TCGA-AG-A01J 
  "DEL PEAK 15(8P23.2) MUTATED"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-AG-A01L                    TCGA-AG-A01N 
  "DEL PEAK 15(8P23.2) MUTATED"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-AG-A01W                    TCGA-AG-A01Y 
  "DEL PEAK 15(8P23.2) MUTATED"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-AG-A020                    TCGA-AG-A023 
  "DEL PEAK 15(8P23.2) MUTATED"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-AG-A025                    TCGA-AG-A026 
"DEL PEAK 15(8P23.2) WILD-TYPE"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-AG-A02G                    TCGA-AG-A02N 
  "DEL PEAK 15(8P23.2) MUTATED" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-AG-A02X                    TCGA-AG-A032 
  "DEL PEAK 15(8P23.2) MUTATED" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-AH-6544                    TCGA-AH-6547 
"DEL PEAK 15(8P23.2) WILD-TYPE"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-AH-6643                    TCGA-AH-6644 
"DEL PEAK 15(8P23.2) WILD-TYPE"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-AH-6897                    TCGA-AH-6903 
"DEL PEAK 15(8P23.2) WILD-TYPE" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-BM-6198                    TCGA-CI-6619 
  "DEL PEAK 15(8P23.2) MUTATED" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-CI-6620                    TCGA-CI-6622 
"DEL PEAK 15(8P23.2) WILD-TYPE" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-CI-6623                    TCGA-CI-6624 
"DEL PEAK 15(8P23.2) WILD-TYPE"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-CL-4957                    TCGA-CL-5917 
  "DEL PEAK 15(8P23.2) MUTATED"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-CL-5918                    TCGA-DC-4745 
"DEL PEAK 15(8P23.2) WILD-TYPE"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-DC-4749                    TCGA-DC-5337 
  "DEL PEAK 15(8P23.2) MUTATED" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-DC-5869                    TCGA-DC-6154 
  "DEL PEAK 15(8P23.2) MUTATED" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-DC-6155                    TCGA-DC-6156 
  "DEL PEAK 15(8P23.2) MUTATED"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-DC-6157                    TCGA-DC-6158 
  "DEL PEAK 15(8P23.2) MUTATED"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-DC-6160                    TCGA-DC-6681 
"DEL PEAK 15(8P23.2) WILD-TYPE" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-DC-6682                    TCGA-DC-6683 
  "DEL PEAK 15(8P23.2) MUTATED"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-DT-5265                    TCGA-DY-A0XA 
  "DEL PEAK 15(8P23.2) MUTATED"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-DY-A1DC                    TCGA-DY-A1DD 
  "DEL PEAK 15(8P23.2) MUTATED"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-DY-A1DE                    TCGA-DY-A1DF 
  "DEL PEAK 15(8P23.2) MUTATED" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-DY-A1DG                    TCGA-DY-A1H8 
"DEL PEAK 15(8P23.2) WILD-TYPE" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-EF-5830                    TCGA-EF-5831 
  "DEL PEAK 15(8P23.2) MUTATED"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-EI-6506                    TCGA-EI-6507 
"DEL PEAK 15(8P23.2) WILD-TYPE" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-EI-6508                    TCGA-EI-6509 
"DEL PEAK 15(8P23.2) WILD-TYPE" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-EI-6510                    TCGA-EI-6511 
"DEL PEAK 15(8P23.2) WILD-TYPE"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-EI-6512                    TCGA-EI-6513 
"DEL PEAK 15(8P23.2) WILD-TYPE"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-EI-6514                    TCGA-EI-6881 
"DEL PEAK 15(8P23.2) WILD-TYPE" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-EI-6882                    TCGA-EI-6883 
"DEL PEAK 15(8P23.2) WILD-TYPE"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-EI-6884                    TCGA-EI-6885 
  "DEL PEAK 15(8P23.2) MUTATED"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-EI-6917                    TCGA-EI-7002 
"DEL PEAK 15(8P23.2) WILD-TYPE"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-EI-7004                    TCGA-F5-6465 
  "DEL PEAK 15(8P23.2) MUTATED" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-F5-6571                    TCGA-F5-6702 
  "DEL PEAK 15(8P23.2) MUTATED"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-F5-6810                    TCGA-F5-6811 
  "DEL PEAK 15(8P23.2) MUTATED" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-F5-6812                    TCGA-F5-6813 
  "DEL PEAK 15(8P23.2) MUTATED"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-F5-6814                    TCGA-F5-6861 
"DEL PEAK 15(8P23.2) WILD-TYPE" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-F5-6863                    TCGA-F5-6864 
  "DEL PEAK 15(8P23.2) MUTATED"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-G5-6233                    TCGA-G5-6235 
  "DEL PEAK 15(8P23.2) MUTATED" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-G5-6572                    TCGA-G5-6641 
"DEL PEAK 15(8P23.2) WILD-TYPE"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-AF-2687                    TCGA-AF-2689 
"DEL PEAK 15(8P23.2) WILD-TYPE"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-AF-2690                    TCGA-AF-2691 
  "DEL PEAK 15(8P23.2) MUTATED"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-AF-2692                    TCGA-AF-2693 
  "DEL PEAK 15(8P23.2) MUTATED"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-AF-3400                    TCGA-AF-3911 
  "DEL PEAK 15(8P23.2) MUTATED"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-AF-3913                    TCGA-AF-4110 
  "DEL PEAK 15(8P23.2) MUTATED" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"DEL PEAK 15(8P23.2) WILD-TYPE"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-AF-6655                    TCGA-AF-6672 
  "DEL PEAK 15(8P23.2) MUTATED"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-AG-3575                    TCGA-AG-3581 
"DEL PEAK 15(8P23.2) WILD-TYPE" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-AG-3582                    TCGA-AG-3583 
  "DEL PEAK 15(8P23.2) MUTATED" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-AG-3586                    TCGA-AG-3587 
  "DEL PEAK 15(8P23.2) MUTATED"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-AG-3599                    TCGA-AG-3605 
"DEL PEAK 15(8P23.2) WILD-TYPE"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-AG-3726                    TCGA-AG-3727 
  "DEL PEAK 15(8P23.2) MUTATED"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-AG-3731                    TCGA-AG-3742 
"DEL PEAK 15(8P23.2) WILD-TYPE"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-AG-3878                    TCGA-AG-3883 
"DEL PEAK 15(8P23.2) WILD-TYPE"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"DEL PEAK 15(8P23.2) WILD-TYPE" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
  "DEL PEAK 15(8P23.2) MUTATED" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-AG-3896                    TCGA-AG-3999 
  "DEL PEAK 15(8P23.2) MUTATED"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-AG-4001                    TCGA-AG-4007 
  "DEL PEAK 15(8P23.2) MUTATED"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-AG-4008                    TCGA-AG-4022 
  "DEL PEAK 15(8P23.2) MUTATED" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-AG-A002                    TCGA-AG-A008 
  "DEL PEAK 15(8P23.2) MUTATED" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-AG-A00C                    TCGA-AG-A00H 
"DEL PEAK 15(8P23.2) WILD-TYPE"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-AG-A00Y                    TCGA-AG-A011 
  "DEL PEAK 15(8P23.2) MUTATED" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-AG-A014                    TCGA-AG-A015 
  "DEL PEAK 15(8P23.2) MUTATED" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-AG-A016                    TCGA-AG-A01J 
  "DEL PEAK 15(8P23.2) MUTATED"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-AG-A01L                    TCGA-AG-A01N 
  "DEL PEAK 15(8P23.2) MUTATED"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-AG-A01W                    TCGA-AG-A01Y 
  "DEL PEAK 15(8P23.2) MUTATED"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-AG-A020                    TCGA-AG-A023 
  "DEL PEAK 15(8P23.2) MUTATED"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-AG-A025                    TCGA-AG-A026 
"DEL PEAK 15(8P23.2) WILD-TYPE"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-AG-A02G                    TCGA-AG-A02N 
  "DEL PEAK 15(8P23.2) MUTATED" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-AG-A02X                    TCGA-AG-A032 
  "DEL PEAK 15(8P23.2) MUTATED" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-AH-6544                    TCGA-AH-6547 
"DEL PEAK 15(8P23.2) WILD-TYPE"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-AH-6643                    TCGA-AH-6644 
"DEL PEAK 15(8P23.2) WILD-TYPE"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-AH-6897                    TCGA-AH-6903 
"DEL PEAK 15(8P23.2) WILD-TYPE" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-BM-6198                    TCGA-CI-6619 
  "DEL PEAK 15(8P23.2) MUTATED" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-CI-6620                    TCGA-CI-6622 
"DEL PEAK 15(8P23.2) WILD-TYPE" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-CI-6623                    TCGA-CI-6624 
"DEL PEAK 15(8P23.2) WILD-TYPE"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-CL-4957                    TCGA-CL-5917 
  "DEL PEAK 15(8P23.2) MUTATED"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-CL-5918                    TCGA-DC-4745 
"DEL PEAK 15(8P23.2) WILD-TYPE"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-DC-4749                    TCGA-DC-5337 
  "DEL PEAK 15(8P23.2) MUTATED" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-DC-5869                    TCGA-DC-6154 
  "DEL PEAK 15(8P23.2) MUTATED" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-DC-6155                    TCGA-DC-6156 
  "DEL PEAK 15(8P23.2) MUTATED"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-DC-6157                    TCGA-DC-6158 
  "DEL PEAK 15(8P23.2) MUTATED"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-DC-6160                    TCGA-DC-6681 
"DEL PEAK 15(8P23.2) WILD-TYPE" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-DC-6682                    TCGA-DC-6683 
  "DEL PEAK 15(8P23.2) MUTATED"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-DT-5265                    TCGA-DY-A0XA 
  "DEL PEAK 15(8P23.2) MUTATED"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-DY-A1DC                    TCGA-DY-A1DD 
  "DEL PEAK 15(8P23.2) MUTATED"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-DY-A1DE                    TCGA-DY-A1DF 
  "DEL PEAK 15(8P23.2) MUTATED" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-DY-A1DG                    TCGA-DY-A1H8 
"DEL PEAK 15(8P23.2) WILD-TYPE" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-EF-5830                    TCGA-EF-5831 
  "DEL PEAK 15(8P23.2) MUTATED"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-EI-6506                    TCGA-EI-6507 
"DEL PEAK 15(8P23.2) WILD-TYPE" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-EI-6508                    TCGA-EI-6509 
"DEL PEAK 15(8P23.2) WILD-TYPE" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-EI-6510                    TCGA-EI-6511 
"DEL PEAK 15(8P23.2) WILD-TYPE"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-EI-6512                    TCGA-EI-6513 
"DEL PEAK 15(8P23.2) WILD-TYPE"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-EI-6514                    TCGA-EI-6881 
"DEL PEAK 15(8P23.2) WILD-TYPE" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-EI-6882                    TCGA-EI-6883 
"DEL PEAK 15(8P23.2) WILD-TYPE"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-EI-6884                    TCGA-EI-6885 
  "DEL PEAK 15(8P23.2) MUTATED"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-EI-6917                    TCGA-EI-7002 
"DEL PEAK 15(8P23.2) WILD-TYPE"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-EI-7004                    TCGA-F5-6465 
  "DEL PEAK 15(8P23.2) MUTATED" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-F5-6571                    TCGA-F5-6702 
  "DEL PEAK 15(8P23.2) MUTATED"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-F5-6810                    TCGA-F5-6811 
  "DEL PEAK 15(8P23.2) MUTATED" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-F5-6812                    TCGA-F5-6813 
  "DEL PEAK 15(8P23.2) MUTATED"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-F5-6814                    TCGA-F5-6861 
"DEL PEAK 15(8P23.2) WILD-TYPE" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-F5-6863                    TCGA-F5-6864 
  "DEL PEAK 15(8P23.2) MUTATED"   "DEL PEAK 15(8P23.2) MUTATED" 
                   TCGA-G5-6233                    TCGA-G5-6235 
  "DEL PEAK 15(8P23.2) MUTATED" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-G5-6572                    TCGA-G5-6641 
"DEL PEAK 15(8P23.2) WILD-TYPE"   "DEL PEAK 15(8P23.2) MUTATED" 
[1] "hr=" "1.3"
D40V2, continuous
                               vv
clus                            STAGE I STAGE II STAGE IIA STAGE IIB STAGE IIC
  DEL PEAK 15(8P23.2) MUTATED        16        4        24         1         2
  DEL PEAK 15(8P23.2) WILD-TYPE      14        4        14         1         0
                               vv
clus                            STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  DEL PEAK 15(8P23.2) MUTATED           4          5         15          8
  DEL PEAK 15(8P23.2) WILD-TYPE         1          4          8          6
                               vv
clus                            STAGE IV STAGE IVA
  DEL PEAK 15(8P23.2) MUTATED         14         3
  DEL PEAK 15(8P23.2) WILD-TYPE        3         6
D40V3, multiclass
                               vv
clus                            T1 T2 T3 T4
  DEL PEAK 15(8P23.2) MUTATED    3 18 67 11
  DEL PEAK 15(8P23.2) WILD-TYPE  6 11 42  3
D40V4, multiclass
    clus
vv   DEL PEAK 15(8P23.2) MUTATED DEL PEAK 15(8P23.2) WILD-TYPE
  T1                           3                             6
  T2                          18                            11
  T3                          67                            42
  T4                          11                             3
                               vv
clus                            N0 N1 N2
  DEL PEAK 15(8P23.2) MUTATED   48 29 21
  DEL PEAK 15(8P23.2) WILD-TYPE 35 16 11
D40V5, multiclass
    clus
vv   DEL PEAK 15(8P23.2) MUTATED DEL PEAK 15(8P23.2) WILD-TYPE
  N0                          48                            35
  N1                          29                            16
  N2                          21                            11
                               vv
clus                            M0 M1 M1A MX
  DEL PEAK 15(8P23.2) MUTATED   73 15   1  9
  DEL PEAK 15(8P23.2) WILD-TYPE 50  7   1  4
D40V6, multiclass
     clus
vv    DEL PEAK 15(8P23.2) MUTATED DEL PEAK 15(8P23.2) WILD-TYPE
  M0                           73                            50
  M1                           15                             7
  M1A                           1                             1
  MX                            9                             4
D40V7, binary
                               cls
clus                             0  1
  DEL PEAK 15(8P23.2) MUTATED   45 54
  DEL PEAK 15(8P23.2) WILD-TYPE 29 34
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 15(8P23.2) MUTATED     45   54
  DEL PEAK 15(8P23.2) WILD-TYPE   29   34
        clus
vv       DEL PEAK 15(8P23.2) MUTATED DEL PEAK 15(8P23.2) WILD-TYPE
  FEMALE                          45                            29
  MALE                            54                            34
D40V8, binary
                               cls
clus                             0  1
  DEL PEAK 15(8P23.2) MUTATED   88  7
  DEL PEAK 15(8P23.2) WILD-TYPE 55  6
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 15(8P23.2) MUTATED     88    7
  DEL PEAK 15(8P23.2) WILD-TYPE   55    6
                                clus
vv                               DEL PEAK 15(8P23.2) MUTATED
  RECTAL ADENOCARCINOMA                                   88
  RECTAL MUCINOUS ADENOCARCINOMA                           7
                                clus
vv                               DEL PEAK 15(8P23.2) WILD-TYPE
  RECTAL ADENOCARCINOMA                                     55
  RECTAL MUCINOUS ADENOCARCINOMA                             6
D40V9, binary
                               cls
clus                             0  1
  DEL PEAK 15(8P23.2) MUTATED    5 94
  DEL PEAK 15(8P23.2) WILD-TYPE  1 62
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 15(8P23.2) MUTATED      5   94
  DEL PEAK 15(8P23.2) WILD-TYPE    1   62
     clus
vv    DEL PEAK 15(8P23.2) MUTATED DEL PEAK 15(8P23.2) WILD-TYPE
  NO                            5                             1
  YES                          94                            62
                               vv
clus                            R0 R1 R2 RX
  DEL PEAK 15(8P23.2) MUTATED   72  1 10  2
  DEL PEAK 15(8P23.2) WILD-TYPE 49  1  2  1
D40V10, multiclass
    clus
vv   DEL PEAK 15(8P23.2) MUTATED DEL PEAK 15(8P23.2) WILD-TYPE
  R0                          72                            49
  R1                           1                             1
  R2                          10                             2
  RX                           2                             1
D40V11, continuous

Clustering(41) Variable = DEL PEAK 16(8P11.21) MUTATION ANALYSIS
D41V1, survival
                                sevent
clus2                              0   1
  DEL PEAK 16(8P11.21) MUTATED    15   2
  DEL PEAK 16(8P11.21) WILD-TYPE 102  11
  DEL PEAK 16(8P11.21) MUTATED DEL PEAK 16(8P11.21) WILD-TYPE 
                            17                            113 
  DEL PEAK 16(8P11.21) MUTATED DEL PEAK 16(8P11.21) WILD-TYPE 
                             2                             11 
$`DEL PEAK 16(8P11.21) MUTATED`
TCGA-AF-2689 TCGA-AF-2692 TCGA-AF-3400 TCGA-AG-3582 TCGA-AG-3726 TCGA-AG-3742 
       17.95        13.55        12.72         1.02         7.96         0.99 
TCGA-AG-4008 TCGA-AG-A011 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A02G TCGA-BM-6198 
        1.02        17.03        12.00        70.03        38.93        10.19 
TCGA-DC-5869 TCGA-DC-6156 TCGA-DY-A1DG TCGA-EI-7002 TCGA-F5-6810 
       12.99        15.02        51.48        11.97         0.39 

$`DEL PEAK 16(8P11.21) WILD-TYPE`
TCGA-AF-2687 TCGA-AF-2690 TCGA-AF-2691 TCGA-AF-2693 TCGA-AF-3911 TCGA-AF-3913 
       24.13        17.23        10.62        19.10        25.02        10.39 
TCGA-AF-4110 TCGA-AF-5654 TCGA-AF-6136 TCGA-AF-6655 TCGA-AF-6672 TCGA-AG-3575 
       14.50         8.45        15.35        11.67        10.39        12.00 
TCGA-AG-3581 TCGA-AG-3583 TCGA-AG-3586 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3605 
        1.02         2.01         1.02         1.02         0.99         0.99 
TCGA-AG-3727 TCGA-AG-3731 TCGA-AG-3878 TCGA-AG-3883 TCGA-AG-3887 TCGA-AG-3892 
        0.95         1.02         0.99         1.02         0.92         1.02 
TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3896 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 
        0.99         0.99         1.02         1.02         1.02         1.02 
TCGA-AG-4022 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y 
        0.99        20.94        13.91         6.02        25.94        23.01 
TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01J TCGA-AG-A01N TCGA-AG-A01Y 
       15.91        13.02         1.02         1.02        12.00        63.98 
TCGA-AG-A020 TCGA-AG-A023 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02N TCGA-AG-A02X 
       10.98        51.98        49.94         1.94        61.94        40.96 
TCGA-AG-A032 TCGA-AH-6544 TCGA-AH-6547 TCGA-AH-6643 TCGA-AH-6644 TCGA-AH-6897 
       38.01         0.49         1.45         0.69         0.72         4.60 
TCGA-AH-6903 TCGA-CI-6619 TCGA-CI-6620 TCGA-CI-6622 TCGA-CI-6623 TCGA-CI-6624 
        1.81         6.02         6.02         6.94         9.37         4.70 
TCGA-CL-4957 TCGA-CL-5917 TCGA-CL-5918 TCGA-DC-4745 TCGA-DC-4749 TCGA-DC-5337 
       13.97        60.00         7.99        10.98        11.01        15.02 
TCGA-DC-6154 TCGA-DC-6155 TCGA-DC-6157 TCGA-DC-6158 TCGA-DC-6160 TCGA-DC-6681 
       12.00        14.01        36.00         6.97        30.05        12.95 
TCGA-DC-6682 TCGA-DC-6683 TCGA-DT-5265 TCGA-DY-A0XA TCGA-DY-A1DC TCGA-DY-A1DD 
       13.02        10.06         5.29       126.41        41.33        57.24 
TCGA-DY-A1DE TCGA-DY-A1DF TCGA-DY-A1H8 TCGA-EF-5830 TCGA-EF-5831 TCGA-EI-6506 
      129.27        24.13        32.58         0.49         2.40        20.55 
TCGA-EI-6507 TCGA-EI-6508 TCGA-EI-6509 TCGA-EI-6510 TCGA-EI-6511 TCGA-EI-6512 
       19.96        20.91        17.00        18.28        15.85        17.69 
TCGA-EI-6513 TCGA-EI-6514 TCGA-EI-6881 TCGA-EI-6882 TCGA-EI-6883 TCGA-EI-6884 
       16.34        16.31        16.37         8.61        11.51        10.78 
TCGA-EI-6885 TCGA-EI-6917 TCGA-EI-7004 TCGA-F5-6465 TCGA-F5-6571 TCGA-F5-6702 
       13.61        17.46         8.45         3.39         0.85         2.17 
TCGA-F5-6811 TCGA-F5-6812 TCGA-F5-6813 TCGA-F5-6814 TCGA-F5-6861 TCGA-F5-6863 
        1.02         0.66         0.69         0.53         1.08         0.76 
TCGA-F5-6864 TCGA-G5-6233 TCGA-G5-6235 TCGA-G5-6572 TCGA-G5-6641 
        0.46        18.25        55.76        47.08        26.43 

  DEL PEAK 16(8P11.21) MUTATED DEL PEAK 16(8P11.21) WILD-TYPE 
                          0.39                           0.46 
  DEL PEAK 16(8P11.21) MUTATED DEL PEAK 16(8P11.21) WILD-TYPE 
                         70.03                         129.27 
  DEL PEAK 16(8P11.21) MUTATED DEL PEAK 16(8P11.21) WILD-TYPE 
                         12.72                          10.78 
[1] "0.4 - 70.0 (12.7)"  "0.5 - 129.3 (10.8)"
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK 16(8P11.21) WILD-TYPE"   "DEL PEAK 16(8P11.21) MUTATED" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
  "DEL PEAK 16(8P11.21) MUTATED" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
  "DEL PEAK 16(8P11.21) MUTATED" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-3575                     TCGA-AG-3581 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-3582                     TCGA-AG-3583 
  "DEL PEAK 16(8P11.21) MUTATED" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
  "DEL PEAK 16(8P11.21) MUTATED" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"DEL PEAK 16(8P11.21) WILD-TYPE"   "DEL PEAK 16(8P11.21) MUTATED" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-4001                     TCGA-AG-4007 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-4008                     TCGA-AG-4022 
  "DEL PEAK 16(8P11.21) MUTATED" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
"DEL PEAK 16(8P11.21) WILD-TYPE"   "DEL PEAK 16(8P11.21) MUTATED" 
                    TCGA-AG-A014                     TCGA-AG-A015 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
  "DEL PEAK 16(8P11.21) MUTATED" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
  "DEL PEAK 16(8P11.21) MUTATED" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
  "DEL PEAK 16(8P11.21) MUTATED" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AH-6544                     TCGA-AH-6547 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AH-6897                     TCGA-AH-6903 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
  "DEL PEAK 16(8P11.21) MUTATED" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-CL-4957                     TCGA-CL-5917 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-CL-5918                     TCGA-DC-4745 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-DC-4749                     TCGA-DC-5337 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
  "DEL PEAK 16(8P11.21) MUTATED" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-DC-6155                     TCGA-DC-6156 
"DEL PEAK 16(8P11.21) WILD-TYPE"   "DEL PEAK 16(8P11.21) MUTATED" 
                    TCGA-DC-6157                     TCGA-DC-6158 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-DC-6160                     TCGA-DC-6681 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
  "DEL PEAK 16(8P11.21) MUTATED" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EF-5830                     TCGA-EF-5831 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EI-6506                     TCGA-EI-6507 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EI-6512                     TCGA-EI-6513 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EI-6514                     TCGA-EI-6881 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EI-6884                     TCGA-EI-6885 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"DEL PEAK 16(8P11.21) WILD-TYPE"   "DEL PEAK 16(8P11.21) MUTATED" 
                    TCGA-EI-7004                     TCGA-F5-6465 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-F5-6571                     TCGA-F5-6702 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-F5-6810                     TCGA-F5-6811 
  "DEL PEAK 16(8P11.21) MUTATED" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-F5-6812                     TCGA-F5-6813 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-G5-6233                     TCGA-G5-6235 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK 16(8P11.21) WILD-TYPE"   "DEL PEAK 16(8P11.21) MUTATED" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
  "DEL PEAK 16(8P11.21) MUTATED" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
  "DEL PEAK 16(8P11.21) MUTATED" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-3575                     TCGA-AG-3581 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-3582                     TCGA-AG-3583 
  "DEL PEAK 16(8P11.21) MUTATED" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
  "DEL PEAK 16(8P11.21) MUTATED" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"DEL PEAK 16(8P11.21) WILD-TYPE"   "DEL PEAK 16(8P11.21) MUTATED" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-4001                     TCGA-AG-4007 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-4008                     TCGA-AG-4022 
  "DEL PEAK 16(8P11.21) MUTATED" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
"DEL PEAK 16(8P11.21) WILD-TYPE"   "DEL PEAK 16(8P11.21) MUTATED" 
                    TCGA-AG-A014                     TCGA-AG-A015 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
  "DEL PEAK 16(8P11.21) MUTATED" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
  "DEL PEAK 16(8P11.21) MUTATED" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
  "DEL PEAK 16(8P11.21) MUTATED" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AH-6544                     TCGA-AH-6547 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AH-6897                     TCGA-AH-6903 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
  "DEL PEAK 16(8P11.21) MUTATED" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-CL-4957                     TCGA-CL-5917 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-CL-5918                     TCGA-DC-4745 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-DC-4749                     TCGA-DC-5337 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
  "DEL PEAK 16(8P11.21) MUTATED" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-DC-6155                     TCGA-DC-6156 
"DEL PEAK 16(8P11.21) WILD-TYPE"   "DEL PEAK 16(8P11.21) MUTATED" 
                    TCGA-DC-6157                     TCGA-DC-6158 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-DC-6160                     TCGA-DC-6681 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
  "DEL PEAK 16(8P11.21) MUTATED" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EF-5830                     TCGA-EF-5831 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EI-6506                     TCGA-EI-6507 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EI-6512                     TCGA-EI-6513 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EI-6514                     TCGA-EI-6881 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EI-6884                     TCGA-EI-6885 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"DEL PEAK 16(8P11.21) WILD-TYPE"   "DEL PEAK 16(8P11.21) MUTATED" 
                    TCGA-EI-7004                     TCGA-F5-6465 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-F5-6571                     TCGA-F5-6702 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-F5-6810                     TCGA-F5-6811 
  "DEL PEAK 16(8P11.21) MUTATED" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-F5-6812                     TCGA-F5-6813 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-G5-6233                     TCGA-G5-6235 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK 16(8P11.21) WILD-TYPE"   "DEL PEAK 16(8P11.21) MUTATED" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
  "DEL PEAK 16(8P11.21) MUTATED" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
  "DEL PEAK 16(8P11.21) MUTATED" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-3575                     TCGA-AG-3581 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-3582                     TCGA-AG-3583 
  "DEL PEAK 16(8P11.21) MUTATED" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
  "DEL PEAK 16(8P11.21) MUTATED" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"DEL PEAK 16(8P11.21) WILD-TYPE"   "DEL PEAK 16(8P11.21) MUTATED" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-4001                     TCGA-AG-4007 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-4008                     TCGA-AG-4022 
  "DEL PEAK 16(8P11.21) MUTATED" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
"DEL PEAK 16(8P11.21) WILD-TYPE"   "DEL PEAK 16(8P11.21) MUTATED" 
                    TCGA-AG-A014                     TCGA-AG-A015 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
  "DEL PEAK 16(8P11.21) MUTATED" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
  "DEL PEAK 16(8P11.21) MUTATED" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
  "DEL PEAK 16(8P11.21) MUTATED" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AH-6544                     TCGA-AH-6547 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AH-6897                     TCGA-AH-6903 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
  "DEL PEAK 16(8P11.21) MUTATED" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-CL-4957                     TCGA-CL-5917 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-CL-5918                     TCGA-DC-4745 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-DC-4749                     TCGA-DC-5337 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
  "DEL PEAK 16(8P11.21) MUTATED" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-DC-6155                     TCGA-DC-6156 
"DEL PEAK 16(8P11.21) WILD-TYPE"   "DEL PEAK 16(8P11.21) MUTATED" 
                    TCGA-DC-6157                     TCGA-DC-6158 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-DC-6160                     TCGA-DC-6681 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
  "DEL PEAK 16(8P11.21) MUTATED" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EF-5830                     TCGA-EF-5831 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EI-6506                     TCGA-EI-6507 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EI-6512                     TCGA-EI-6513 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EI-6514                     TCGA-EI-6881 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EI-6884                     TCGA-EI-6885 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"DEL PEAK 16(8P11.21) WILD-TYPE"   "DEL PEAK 16(8P11.21) MUTATED" 
                    TCGA-EI-7004                     TCGA-F5-6465 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-F5-6571                     TCGA-F5-6702 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-F5-6810                     TCGA-F5-6811 
  "DEL PEAK 16(8P11.21) MUTATED" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-F5-6812                     TCGA-F5-6813 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-G5-6233                     TCGA-G5-6235 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
[1] "hr=" "1"  
D41V2, continuous
                                vv
clus                             STAGE I STAGE II STAGE IIA STAGE IIB STAGE IIC
  DEL PEAK 16(8P11.21) MUTATED         3        1         8         0         0
  DEL PEAK 16(8P11.21) WILD-TYPE      27        7        30         2         2
                                vv
clus                             STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  DEL PEAK 16(8P11.21) MUTATED           1          0          4          0
  DEL PEAK 16(8P11.21) WILD-TYPE         4          9         19         14
                                vv
clus                             STAGE IV STAGE IVA
  DEL PEAK 16(8P11.21) MUTATED          5         2
  DEL PEAK 16(8P11.21) WILD-TYPE       12         7
D41V3, multiclass
                                vv
clus                             T1 T2 T3 T4
  DEL PEAK 16(8P11.21) MUTATED    1  3 19  1
  DEL PEAK 16(8P11.21) WILD-TYPE  8 26 90 13
D41V4, multiclass
    clus
vv   DEL PEAK 16(8P11.21) MUTATED DEL PEAK 16(8P11.21) WILD-TYPE
  T1                            1                              8
  T2                            3                             26
  T3                           19                             90
  T4                            1                             13
                                vv
clus                             N0 N1 N2
  DEL PEAK 16(8P11.21) MUTATED   12  8  4
  DEL PEAK 16(8P11.21) WILD-TYPE 71 37 28
D41V5, multiclass
    clus
vv   DEL PEAK 16(8P11.21) MUTATED DEL PEAK 16(8P11.21) WILD-TYPE
  N0                           12                             71
  N1                            8                             37
  N2                            4                             28
                                vv
clus                              M0  M1 M1A  MX
  DEL PEAK 16(8P11.21) MUTATED    15   6   1   1
  DEL PEAK 16(8P11.21) WILD-TYPE 108  16   1  12
D41V6, multiclass
     clus
vv    DEL PEAK 16(8P11.21) MUTATED DEL PEAK 16(8P11.21) WILD-TYPE
  M0                            15                            108
  M1                             6                             16
  M1A                            1                              1
  MX                             1                             12
D41V7, binary
                                cls
clus                              0  1
  DEL PEAK 16(8P11.21) MUTATED    9 15
  DEL PEAK 16(8P11.21) WILD-TYPE 65 73
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 16(8P11.21) MUTATED      9   15
  DEL PEAK 16(8P11.21) WILD-TYPE   65   73
        clus
vv       DEL PEAK 16(8P11.21) MUTATED DEL PEAK 16(8P11.21) WILD-TYPE
  FEMALE                            9                             65
  MALE                             15                             73
D41V8, binary
                                cls
clus                               0   1
  DEL PEAK 16(8P11.21) MUTATED    20   2
  DEL PEAK 16(8P11.21) WILD-TYPE 123  11
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 16(8P11.21) MUTATED     20    2
  DEL PEAK 16(8P11.21) WILD-TYPE  123   11
                                clus
vv                               DEL PEAK 16(8P11.21) MUTATED
  RECTAL ADENOCARCINOMA                                    20
  RECTAL MUCINOUS ADENOCARCINOMA                            2
                                clus
vv                               DEL PEAK 16(8P11.21) WILD-TYPE
  RECTAL ADENOCARCINOMA                                     123
  RECTAL MUCINOUS ADENOCARCINOMA                             11
D41V9, binary
                                cls
clus                               0   1
  DEL PEAK 16(8P11.21) MUTATED     2  22
  DEL PEAK 16(8P11.21) WILD-TYPE   4 134
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 16(8P11.21) MUTATED      2   22
  DEL PEAK 16(8P11.21) WILD-TYPE    4  134
     clus
vv    DEL PEAK 16(8P11.21) MUTATED DEL PEAK 16(8P11.21) WILD-TYPE
  NO                             2                              4
  YES                           22                            134
                                vv
clus                              R0  R1  R2  RX
  DEL PEAK 16(8P11.21) MUTATED    18   0   3   0
  DEL PEAK 16(8P11.21) WILD-TYPE 103   2   9   3
D41V10, multiclass
    clus
vv   DEL PEAK 16(8P11.21) MUTATED DEL PEAK 16(8P11.21) WILD-TYPE
  R0                           18                            103
  R1                            0                              2
  R2                            3                              9
  RX                            0                              3
D41V11, continuous

Clustering(42) Variable = DEL PEAK 17(10Q21.1) MUTATION ANALYSIS
D42V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 17(10Q21.1) MUTATED   28  2
  DEL PEAK 17(10Q21.1) WILD-TYPE 89 11
  DEL PEAK 17(10Q21.1) MUTATED DEL PEAK 17(10Q21.1) WILD-TYPE 
                            30                            100 
  DEL PEAK 17(10Q21.1) MUTATED DEL PEAK 17(10Q21.1) WILD-TYPE 
                             2                             11 
$`DEL PEAK 17(10Q21.1) MUTATED`
TCGA-AF-2687 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-6672 TCGA-AG-3587 TCGA-AG-3883 
       24.13        13.55        12.72        10.39         1.02         1.02 
TCGA-AG-3887 TCGA-AG-3896 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y 
        0.92         1.02        13.91         6.02        25.94        23.01 
TCGA-AG-A01L TCGA-AG-A026 TCGA-AG-A02X TCGA-CI-6622 TCGA-CI-6624 TCGA-CL-4957 
       12.00         1.94        40.96         6.94         4.70        13.97 
TCGA-DC-6155 TCGA-DC-6157 TCGA-DC-6158 TCGA-DC-6682 TCGA-DC-6683 TCGA-DY-A1DE 
       14.01        36.00         6.97        13.02        10.06       129.27 
TCGA-EI-6509 TCGA-EI-6514 TCGA-EI-6881 TCGA-F5-6702 TCGA-F5-6864 TCGA-G5-6641 
       17.00        16.31        16.37         2.17         0.46        26.43 

$`DEL PEAK 17(10Q21.1) WILD-TYPE`
TCGA-AF-2689 TCGA-AF-2690 TCGA-AF-2691 TCGA-AF-2693 TCGA-AF-3911 TCGA-AF-3913 
       17.95        17.23        10.62        19.10        25.02        10.39 
TCGA-AF-4110 TCGA-AF-5654 TCGA-AF-6136 TCGA-AF-6655 TCGA-AG-3575 TCGA-AG-3581 
       14.50         8.45        15.35        11.67        12.00         1.02 
TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3586 TCGA-AG-3599 TCGA-AG-3605 TCGA-AG-3726 
        1.02         2.01         1.02         0.99         0.99         7.96 
TCGA-AG-3727 TCGA-AG-3731 TCGA-AG-3742 TCGA-AG-3878 TCGA-AG-3892 TCGA-AG-3893 
        0.95         1.02         0.99         0.99         1.02         0.99 
TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-4022 
        0.99         1.02         1.02         1.02         1.02         0.99 
TCGA-AG-A002 TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01J 
       20.94        17.03        15.91        13.02         1.02         1.02 
TCGA-AG-A01N TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A023 TCGA-AG-A025 
       12.00        70.03        63.98        10.98        51.98        49.94 
TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A032 TCGA-AH-6544 TCGA-AH-6547 TCGA-AH-6643 
       38.93        61.94        38.01         0.49         1.45         0.69 
TCGA-AH-6644 TCGA-AH-6897 TCGA-AH-6903 TCGA-BM-6198 TCGA-CI-6619 TCGA-CI-6620 
        0.72         4.60         1.81        10.19         6.02         6.02 
TCGA-CI-6623 TCGA-CL-5917 TCGA-CL-5918 TCGA-DC-4745 TCGA-DC-4749 TCGA-DC-5337 
        9.37        60.00         7.99        10.98        11.01        15.02 
TCGA-DC-5869 TCGA-DC-6154 TCGA-DC-6156 TCGA-DC-6160 TCGA-DC-6681 TCGA-DT-5265 
       12.99        12.00        15.02        30.05        12.95         5.29 
TCGA-DY-A0XA TCGA-DY-A1DC TCGA-DY-A1DD TCGA-DY-A1DF TCGA-DY-A1DG TCGA-DY-A1H8 
      126.41        41.33        57.24        24.13        51.48        32.58 
TCGA-EF-5830 TCGA-EF-5831 TCGA-EI-6506 TCGA-EI-6507 TCGA-EI-6508 TCGA-EI-6510 
        0.49         2.40        20.55        19.96        20.91        18.28 
TCGA-EI-6511 TCGA-EI-6512 TCGA-EI-6513 TCGA-EI-6882 TCGA-EI-6883 TCGA-EI-6884 
       15.85        17.69        16.34         8.61        11.51        10.78 
TCGA-EI-6885 TCGA-EI-6917 TCGA-EI-7002 TCGA-EI-7004 TCGA-F5-6465 TCGA-F5-6571 
       13.61        17.46        11.97         8.45         3.39         0.85 
TCGA-F5-6810 TCGA-F5-6811 TCGA-F5-6812 TCGA-F5-6813 TCGA-F5-6814 TCGA-F5-6861 
        0.39         1.02         0.66         0.69         0.53         1.08 
TCGA-F5-6863 TCGA-G5-6233 TCGA-G5-6235 TCGA-G5-6572 
        0.76        18.25        55.76        47.08 

  DEL PEAK 17(10Q21.1) MUTATED DEL PEAK 17(10Q21.1) WILD-TYPE 
                          0.46                           0.39 
  DEL PEAK 17(10Q21.1) MUTATED DEL PEAK 17(10Q21.1) WILD-TYPE 
                        129.27                         126.41 
  DEL PEAK 17(10Q21.1) MUTATED DEL PEAK 17(10Q21.1) WILD-TYPE 
                         12.87                          10.88 
[1] "0.5 - 129.3 (12.9)" "0.4 - 126.4 (10.9)"
                    TCGA-AF-2687                     TCGA-AF-2689 
  "DEL PEAK 17(10Q21.1) MUTATED" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
  "DEL PEAK 17(10Q21.1) MUTATED" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
  "DEL PEAK 17(10Q21.1) MUTATED" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 17(10Q21.1) WILD-TYPE"   "DEL PEAK 17(10Q21.1) MUTATED" 
                    TCGA-AG-3575                     TCGA-AG-3581 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-3582                     TCGA-AG-3583 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"DEL PEAK 17(10Q21.1) WILD-TYPE"   "DEL PEAK 17(10Q21.1) MUTATED" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"DEL PEAK 17(10Q21.1) WILD-TYPE"   "DEL PEAK 17(10Q21.1) MUTATED" 
                    TCGA-AG-3887                     TCGA-AG-3892 
  "DEL PEAK 17(10Q21.1) MUTATED" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
  "DEL PEAK 17(10Q21.1) MUTATED" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-4001                     TCGA-AG-4007 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-4008                     TCGA-AG-4022 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"DEL PEAK 17(10Q21.1) WILD-TYPE"   "DEL PEAK 17(10Q21.1) MUTATED" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
  "DEL PEAK 17(10Q21.1) MUTATED"   "DEL PEAK 17(10Q21.1) MUTATED" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
  "DEL PEAK 17(10Q21.1) MUTATED" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
  "DEL PEAK 17(10Q21.1) MUTATED" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"DEL PEAK 17(10Q21.1) WILD-TYPE"   "DEL PEAK 17(10Q21.1) MUTATED" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
  "DEL PEAK 17(10Q21.1) MUTATED" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AH-6544                     TCGA-AH-6547 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AH-6897                     TCGA-AH-6903 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"DEL PEAK 17(10Q21.1) WILD-TYPE"   "DEL PEAK 17(10Q21.1) MUTATED" 
                    TCGA-CI-6623                     TCGA-CI-6624 
"DEL PEAK 17(10Q21.1) WILD-TYPE"   "DEL PEAK 17(10Q21.1) MUTATED" 
                    TCGA-CL-4957                     TCGA-CL-5917 
  "DEL PEAK 17(10Q21.1) MUTATED" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-CL-5918                     TCGA-DC-4745 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-DC-4749                     TCGA-DC-5337 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-DC-6155                     TCGA-DC-6156 
  "DEL PEAK 17(10Q21.1) MUTATED" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-DC-6157                     TCGA-DC-6158 
  "DEL PEAK 17(10Q21.1) MUTATED"   "DEL PEAK 17(10Q21.1) MUTATED" 
                    TCGA-DC-6160                     TCGA-DC-6681 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
  "DEL PEAK 17(10Q21.1) MUTATED"   "DEL PEAK 17(10Q21.1) MUTATED" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
  "DEL PEAK 17(10Q21.1) MUTATED" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-EF-5830                     TCGA-EF-5831 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-EI-6506                     TCGA-EI-6507 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"DEL PEAK 17(10Q21.1) WILD-TYPE"   "DEL PEAK 17(10Q21.1) MUTATED" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-EI-6512                     TCGA-EI-6513 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-EI-6514                     TCGA-EI-6881 
  "DEL PEAK 17(10Q21.1) MUTATED"   "DEL PEAK 17(10Q21.1) MUTATED" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-EI-6884                     TCGA-EI-6885 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-EI-7004                     TCGA-F5-6465 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-F5-6571                     TCGA-F5-6702 
"DEL PEAK 17(10Q21.1) WILD-TYPE"   "DEL PEAK 17(10Q21.1) MUTATED" 
                    TCGA-F5-6810                     TCGA-F5-6811 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-F5-6812                     TCGA-F5-6813 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
"DEL PEAK 17(10Q21.1) WILD-TYPE"   "DEL PEAK 17(10Q21.1) MUTATED" 
                    TCGA-G5-6233                     TCGA-G5-6235 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"DEL PEAK 17(10Q21.1) WILD-TYPE"   "DEL PEAK 17(10Q21.1) MUTATED" 
                    TCGA-AF-2687                     TCGA-AF-2689 
  "DEL PEAK 17(10Q21.1) MUTATED" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
  "DEL PEAK 17(10Q21.1) MUTATED" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
  "DEL PEAK 17(10Q21.1) MUTATED" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 17(10Q21.1) WILD-TYPE"   "DEL PEAK 17(10Q21.1) MUTATED" 
                    TCGA-AG-3575                     TCGA-AG-3581 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-3582                     TCGA-AG-3583 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"DEL PEAK 17(10Q21.1) WILD-TYPE"   "DEL PEAK 17(10Q21.1) MUTATED" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"DEL PEAK 17(10Q21.1) WILD-TYPE"   "DEL PEAK 17(10Q21.1) MUTATED" 
                    TCGA-AG-3887                     TCGA-AG-3892 
  "DEL PEAK 17(10Q21.1) MUTATED" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
  "DEL PEAK 17(10Q21.1) MUTATED" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-4001                     TCGA-AG-4007 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-4008                     TCGA-AG-4022 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"DEL PEAK 17(10Q21.1) WILD-TYPE"   "DEL PEAK 17(10Q21.1) MUTATED" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
  "DEL PEAK 17(10Q21.1) MUTATED"   "DEL PEAK 17(10Q21.1) MUTATED" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
  "DEL PEAK 17(10Q21.1) MUTATED" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
  "DEL PEAK 17(10Q21.1) MUTATED" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"DEL PEAK 17(10Q21.1) WILD-TYPE"   "DEL PEAK 17(10Q21.1) MUTATED" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
  "DEL PEAK 17(10Q21.1) MUTATED" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AH-6544                     TCGA-AH-6547 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AH-6897                     TCGA-AH-6903 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"DEL PEAK 17(10Q21.1) WILD-TYPE"   "DEL PEAK 17(10Q21.1) MUTATED" 
                    TCGA-CI-6623                     TCGA-CI-6624 
"DEL PEAK 17(10Q21.1) WILD-TYPE"   "DEL PEAK 17(10Q21.1) MUTATED" 
                    TCGA-CL-4957                     TCGA-CL-5917 
  "DEL PEAK 17(10Q21.1) MUTATED" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-CL-5918                     TCGA-DC-4745 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-DC-4749                     TCGA-DC-5337 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-DC-6155                     TCGA-DC-6156 
  "DEL PEAK 17(10Q21.1) MUTATED" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-DC-6157                     TCGA-DC-6158 
  "DEL PEAK 17(10Q21.1) MUTATED"   "DEL PEAK 17(10Q21.1) MUTATED" 
                    TCGA-DC-6160                     TCGA-DC-6681 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
  "DEL PEAK 17(10Q21.1) MUTATED"   "DEL PEAK 17(10Q21.1) MUTATED" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
  "DEL PEAK 17(10Q21.1) MUTATED" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-EF-5830                     TCGA-EF-5831 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-EI-6506                     TCGA-EI-6507 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"DEL PEAK 17(10Q21.1) WILD-TYPE"   "DEL PEAK 17(10Q21.1) MUTATED" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-EI-6512                     TCGA-EI-6513 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-EI-6514                     TCGA-EI-6881 
  "DEL PEAK 17(10Q21.1) MUTATED"   "DEL PEAK 17(10Q21.1) MUTATED" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-EI-6884                     TCGA-EI-6885 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-EI-7004                     TCGA-F5-6465 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-F5-6571                     TCGA-F5-6702 
"DEL PEAK 17(10Q21.1) WILD-TYPE"   "DEL PEAK 17(10Q21.1) MUTATED" 
                    TCGA-F5-6810                     TCGA-F5-6811 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-F5-6812                     TCGA-F5-6813 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
"DEL PEAK 17(10Q21.1) WILD-TYPE"   "DEL PEAK 17(10Q21.1) MUTATED" 
                    TCGA-G5-6233                     TCGA-G5-6235 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"DEL PEAK 17(10Q21.1) WILD-TYPE"   "DEL PEAK 17(10Q21.1) MUTATED" 
                    TCGA-AF-2687                     TCGA-AF-2689 
  "DEL PEAK 17(10Q21.1) MUTATED" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
  "DEL PEAK 17(10Q21.1) MUTATED" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
  "DEL PEAK 17(10Q21.1) MUTATED" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 17(10Q21.1) WILD-TYPE"   "DEL PEAK 17(10Q21.1) MUTATED" 
                    TCGA-AG-3575                     TCGA-AG-3581 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-3582                     TCGA-AG-3583 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"DEL PEAK 17(10Q21.1) WILD-TYPE"   "DEL PEAK 17(10Q21.1) MUTATED" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"DEL PEAK 17(10Q21.1) WILD-TYPE"   "DEL PEAK 17(10Q21.1) MUTATED" 
                    TCGA-AG-3887                     TCGA-AG-3892 
  "DEL PEAK 17(10Q21.1) MUTATED" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
  "DEL PEAK 17(10Q21.1) MUTATED" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-4001                     TCGA-AG-4007 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-4008                     TCGA-AG-4022 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"DEL PEAK 17(10Q21.1) WILD-TYPE"   "DEL PEAK 17(10Q21.1) MUTATED" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
  "DEL PEAK 17(10Q21.1) MUTATED"   "DEL PEAK 17(10Q21.1) MUTATED" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
  "DEL PEAK 17(10Q21.1) MUTATED" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
  "DEL PEAK 17(10Q21.1) MUTATED" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"DEL PEAK 17(10Q21.1) WILD-TYPE"   "DEL PEAK 17(10Q21.1) MUTATED" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
  "DEL PEAK 17(10Q21.1) MUTATED" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AH-6544                     TCGA-AH-6547 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AH-6897                     TCGA-AH-6903 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"DEL PEAK 17(10Q21.1) WILD-TYPE"   "DEL PEAK 17(10Q21.1) MUTATED" 
                    TCGA-CI-6623                     TCGA-CI-6624 
"DEL PEAK 17(10Q21.1) WILD-TYPE"   "DEL PEAK 17(10Q21.1) MUTATED" 
                    TCGA-CL-4957                     TCGA-CL-5917 
  "DEL PEAK 17(10Q21.1) MUTATED" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-CL-5918                     TCGA-DC-4745 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-DC-4749                     TCGA-DC-5337 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-DC-6155                     TCGA-DC-6156 
  "DEL PEAK 17(10Q21.1) MUTATED" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-DC-6157                     TCGA-DC-6158 
  "DEL PEAK 17(10Q21.1) MUTATED"   "DEL PEAK 17(10Q21.1) MUTATED" 
                    TCGA-DC-6160                     TCGA-DC-6681 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
  "DEL PEAK 17(10Q21.1) MUTATED"   "DEL PEAK 17(10Q21.1) MUTATED" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
  "DEL PEAK 17(10Q21.1) MUTATED" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-EF-5830                     TCGA-EF-5831 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-EI-6506                     TCGA-EI-6507 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"DEL PEAK 17(10Q21.1) WILD-TYPE"   "DEL PEAK 17(10Q21.1) MUTATED" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-EI-6512                     TCGA-EI-6513 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-EI-6514                     TCGA-EI-6881 
  "DEL PEAK 17(10Q21.1) MUTATED"   "DEL PEAK 17(10Q21.1) MUTATED" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-EI-6884                     TCGA-EI-6885 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-EI-7004                     TCGA-F5-6465 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-F5-6571                     TCGA-F5-6702 
"DEL PEAK 17(10Q21.1) WILD-TYPE"   "DEL PEAK 17(10Q21.1) MUTATED" 
                    TCGA-F5-6810                     TCGA-F5-6811 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-F5-6812                     TCGA-F5-6813 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
"DEL PEAK 17(10Q21.1) WILD-TYPE"   "DEL PEAK 17(10Q21.1) MUTATED" 
                    TCGA-G5-6233                     TCGA-G5-6235 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"DEL PEAK 17(10Q21.1) WILD-TYPE"   "DEL PEAK 17(10Q21.1) MUTATED" 
[1] "hr=" "1.2"
D42V2, continuous
                                vv
clus                             STAGE I STAGE II STAGE IIA STAGE IIB STAGE IIC
  DEL PEAK 17(10Q21.1) MUTATED         8        1        12         1         0
  DEL PEAK 17(10Q21.1) WILD-TYPE      22        7        26         1         2
                                vv
clus                             STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  DEL PEAK 17(10Q21.1) MUTATED           0          4          5          4
  DEL PEAK 17(10Q21.1) WILD-TYPE         5          5         18         10
                                vv
clus                             STAGE IV STAGE IVA
  DEL PEAK 17(10Q21.1) MUTATED          1         1
  DEL PEAK 17(10Q21.1) WILD-TYPE       16         8
D42V3, multiclass
                                vv
clus                             T1 T2 T3 T4
  DEL PEAK 17(10Q21.1) MUTATED    1  9 24  3
  DEL PEAK 17(10Q21.1) WILD-TYPE  8 20 85 11
D42V4, multiclass
    clus
vv   DEL PEAK 17(10Q21.1) MUTATED DEL PEAK 17(10Q21.1) WILD-TYPE
  T1                            1                              8
  T2                            9                             20
  T3                           24                             85
  T4                            3                             11
                                vv
clus                             N0 N1 N2
  DEL PEAK 17(10Q21.1) MUTATED   22 10  5
  DEL PEAK 17(10Q21.1) WILD-TYPE 61 35 27
D42V5, multiclass
    clus
vv   DEL PEAK 17(10Q21.1) MUTATED DEL PEAK 17(10Q21.1) WILD-TYPE
  N0                           22                             61
  N1                           10                             35
  N2                            5                             27
                                vv
clus                             M0 M1 M1A MX
  DEL PEAK 17(10Q21.1) MUTATED   34  1   0  2
  DEL PEAK 17(10Q21.1) WILD-TYPE 89 21   2 11
D42V6, multiclass
     clus
vv    DEL PEAK 17(10Q21.1) MUTATED DEL PEAK 17(10Q21.1) WILD-TYPE
  M0                            34                             89
  M1                             1                             21
  M1A                            0                              2
  MX                             2                             11
D42V7, binary
                                cls
clus                              0  1
  DEL PEAK 17(10Q21.1) MUTATED   15 22
  DEL PEAK 17(10Q21.1) WILD-TYPE 59 66
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 17(10Q21.1) MUTATED     15   22
  DEL PEAK 17(10Q21.1) WILD-TYPE   59   66
        clus
vv       DEL PEAK 17(10Q21.1) MUTATED DEL PEAK 17(10Q21.1) WILD-TYPE
  FEMALE                           15                             59
  MALE                             22                             66
D42V8, binary
                                cls
clus                               0   1
  DEL PEAK 17(10Q21.1) MUTATED    31   5
  DEL PEAK 17(10Q21.1) WILD-TYPE 112   8
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 17(10Q21.1) MUTATED     31    5
  DEL PEAK 17(10Q21.1) WILD-TYPE  112    8
                                clus
vv                               DEL PEAK 17(10Q21.1) MUTATED
  RECTAL ADENOCARCINOMA                                    31
  RECTAL MUCINOUS ADENOCARCINOMA                            5
                                clus
vv                               DEL PEAK 17(10Q21.1) WILD-TYPE
  RECTAL ADENOCARCINOMA                                     112
  RECTAL MUCINOUS ADENOCARCINOMA                              8
D42V9, binary
                                cls
clus                               0   1
  DEL PEAK 17(10Q21.1) MUTATED     3  34
  DEL PEAK 17(10Q21.1) WILD-TYPE   3 122
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 17(10Q21.1) MUTATED      3   34
  DEL PEAK 17(10Q21.1) WILD-TYPE    3  122
     clus
vv    DEL PEAK 17(10Q21.1) MUTATED DEL PEAK 17(10Q21.1) WILD-TYPE
  NO                             3                              3
  YES                           34                            122
                                vv
clus                             R0 R1 R2 RX
  DEL PEAK 17(10Q21.1) MUTATED   31  1  0  0
  DEL PEAK 17(10Q21.1) WILD-TYPE 90  1 12  3
D42V10, multiclass
    clus
vv   DEL PEAK 17(10Q21.1) MUTATED DEL PEAK 17(10Q21.1) WILD-TYPE
  R0                           31                             90
  R1                            1                              1
  R2                            0                             12
  RX                            0                              3
D42V11, continuous

Clustering(43) Variable = DEL PEAK 18(10Q25.2) MUTATION ANALYSIS
D43V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 18(10Q25.2) MUTATED   33  2
  DEL PEAK 18(10Q25.2) WILD-TYPE 84 11
  DEL PEAK 18(10Q25.2) MUTATED DEL PEAK 18(10Q25.2) WILD-TYPE 
                            35                             95 
  DEL PEAK 18(10Q25.2) MUTATED DEL PEAK 18(10Q25.2) WILD-TYPE 
                             2                             11 
$`DEL PEAK 18(10Q25.2) MUTATED`
TCGA-AF-2687 TCGA-AF-2689 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-6672 TCGA-AG-3887 
       24.13        17.95        13.55        12.72        10.39         0.92 
TCGA-AG-3896 TCGA-AG-4001 TCGA-AG-A008 TCGA-AG-A00H TCGA-AG-A011 TCGA-AG-A01L 
        1.02         1.02        13.91        25.94        17.03        12.00 
TCGA-AG-A01W TCGA-AG-A020 TCGA-AG-A02X TCGA-AH-6897 TCGA-BM-6198 TCGA-CI-6624 
       70.03        10.98        40.96         4.60        10.19         4.70 
TCGA-DC-6155 TCGA-DC-6157 TCGA-DC-6160 TCGA-DC-6682 TCGA-DC-6683 TCGA-DY-A1DE 
       14.01        36.00        30.05        13.02        10.06       129.27 
TCGA-DY-A1DF TCGA-EF-5831 TCGA-EI-6509 TCGA-EI-6514 TCGA-EI-6881 TCGA-EI-7002 
       24.13         2.40        17.00        16.31        16.37        11.97 
TCGA-F5-6702 TCGA-F5-6812 TCGA-F5-6864 TCGA-G5-6572 TCGA-G5-6641 
        2.17         0.66         0.46        47.08        26.43 

$`DEL PEAK 18(10Q25.2) WILD-TYPE`
TCGA-AF-2690 TCGA-AF-2691 TCGA-AF-2693 TCGA-AF-3911 TCGA-AF-3913 TCGA-AF-4110 
       17.23        10.62        19.10        25.02        10.39        14.50 
TCGA-AF-5654 TCGA-AF-6136 TCGA-AF-6655 TCGA-AG-3575 TCGA-AG-3581 TCGA-AG-3582 
        8.45        15.35        11.67        12.00         1.02         1.02 
TCGA-AG-3583 TCGA-AG-3586 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3605 TCGA-AG-3726 
        2.01         1.02         1.02         0.99         0.99         7.96 
TCGA-AG-3727 TCGA-AG-3731 TCGA-AG-3742 TCGA-AG-3878 TCGA-AG-3883 TCGA-AG-3892 
        0.95         1.02         0.99         0.99         1.02         1.02 
TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-4022 
        0.99         0.99         1.02         1.02         1.02         0.99 
TCGA-AG-A002 TCGA-AG-A00C TCGA-AG-A00Y TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 
       20.94         6.02        23.01        15.91        13.02         1.02 
TCGA-AG-A01J TCGA-AG-A01N TCGA-AG-A01Y TCGA-AG-A023 TCGA-AG-A025 TCGA-AG-A026 
        1.02        12.00        63.98        51.98        49.94         1.94 
TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A032 TCGA-AH-6544 TCGA-AH-6547 TCGA-AH-6643 
       38.93        61.94        38.01         0.49         1.45         0.69 
TCGA-AH-6644 TCGA-AH-6903 TCGA-CI-6619 TCGA-CI-6620 TCGA-CI-6622 TCGA-CI-6623 
        0.72         1.81         6.02         6.02         6.94         9.37 
TCGA-CL-4957 TCGA-CL-5917 TCGA-CL-5918 TCGA-DC-4745 TCGA-DC-4749 TCGA-DC-5337 
       13.97        60.00         7.99        10.98        11.01        15.02 
TCGA-DC-5869 TCGA-DC-6154 TCGA-DC-6156 TCGA-DC-6158 TCGA-DC-6681 TCGA-DT-5265 
       12.99        12.00        15.02         6.97        12.95         5.29 
TCGA-DY-A0XA TCGA-DY-A1DC TCGA-DY-A1DD TCGA-DY-A1DG TCGA-DY-A1H8 TCGA-EF-5830 
      126.41        41.33        57.24        51.48        32.58         0.49 
TCGA-EI-6506 TCGA-EI-6507 TCGA-EI-6508 TCGA-EI-6510 TCGA-EI-6511 TCGA-EI-6512 
       20.55        19.96        20.91        18.28        15.85        17.69 
TCGA-EI-6513 TCGA-EI-6882 TCGA-EI-6883 TCGA-EI-6884 TCGA-EI-6885 TCGA-EI-6917 
       16.34         8.61        11.51        10.78        13.61        17.46 
TCGA-EI-7004 TCGA-F5-6465 TCGA-F5-6571 TCGA-F5-6810 TCGA-F5-6811 TCGA-F5-6813 
        8.45         3.39         0.85         0.39         1.02         0.69 
TCGA-F5-6814 TCGA-F5-6861 TCGA-F5-6863 TCGA-G5-6233 TCGA-G5-6235 
        0.53         1.08         0.76        18.25        55.76 

  DEL PEAK 18(10Q25.2) MUTATED DEL PEAK 18(10Q25.2) WILD-TYPE 
                          0.46                           0.39 
  DEL PEAK 18(10Q25.2) MUTATED DEL PEAK 18(10Q25.2) WILD-TYPE 
                        129.27                         126.41 
  DEL PEAK 18(10Q25.2) MUTATED DEL PEAK 18(10Q25.2) WILD-TYPE 
                         13.55                           9.37 
[1] "0.5 - 129.3 (13.6)" "0.4 - 126.4 (9.4)" 
                    TCGA-AF-2687                     TCGA-AF-2689 
  "DEL PEAK 18(10Q25.2) MUTATED"   "DEL PEAK 18(10Q25.2) MUTATED" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
  "DEL PEAK 18(10Q25.2) MUTATED" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
  "DEL PEAK 18(10Q25.2) MUTATED" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 18(10Q25.2) WILD-TYPE"   "DEL PEAK 18(10Q25.2) MUTATED" 
                    TCGA-AG-3575                     TCGA-AG-3581 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-3582                     TCGA-AG-3583 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
  "DEL PEAK 18(10Q25.2) MUTATED" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
  "DEL PEAK 18(10Q25.2) MUTATED" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-4001                     TCGA-AG-4007 
  "DEL PEAK 18(10Q25.2) MUTATED" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-4008                     TCGA-AG-4022 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"DEL PEAK 18(10Q25.2) WILD-TYPE"   "DEL PEAK 18(10Q25.2) MUTATED" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
"DEL PEAK 18(10Q25.2) WILD-TYPE"   "DEL PEAK 18(10Q25.2) MUTATED" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
"DEL PEAK 18(10Q25.2) WILD-TYPE"   "DEL PEAK 18(10Q25.2) MUTATED" 
                    TCGA-AG-A014                     TCGA-AG-A015 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
  "DEL PEAK 18(10Q25.2) MUTATED" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
  "DEL PEAK 18(10Q25.2) MUTATED" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-A020                     TCGA-AG-A023 
  "DEL PEAK 18(10Q25.2) MUTATED" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
  "DEL PEAK 18(10Q25.2) MUTATED" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AH-6544                     TCGA-AH-6547 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AH-6897                     TCGA-AH-6903 
  "DEL PEAK 18(10Q25.2) MUTATED" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
  "DEL PEAK 18(10Q25.2) MUTATED" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
"DEL PEAK 18(10Q25.2) WILD-TYPE"   "DEL PEAK 18(10Q25.2) MUTATED" 
                    TCGA-CL-4957                     TCGA-CL-5917 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-CL-5918                     TCGA-DC-4745 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-DC-4749                     TCGA-DC-5337 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-DC-6155                     TCGA-DC-6156 
  "DEL PEAK 18(10Q25.2) MUTATED" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-DC-6157                     TCGA-DC-6158 
  "DEL PEAK 18(10Q25.2) MUTATED" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-DC-6160                     TCGA-DC-6681 
  "DEL PEAK 18(10Q25.2) MUTATED" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
  "DEL PEAK 18(10Q25.2) MUTATED"   "DEL PEAK 18(10Q25.2) MUTATED" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
  "DEL PEAK 18(10Q25.2) MUTATED"   "DEL PEAK 18(10Q25.2) MUTATED" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-EF-5830                     TCGA-EF-5831 
"DEL PEAK 18(10Q25.2) WILD-TYPE"   "DEL PEAK 18(10Q25.2) MUTATED" 
                    TCGA-EI-6506                     TCGA-EI-6507 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"DEL PEAK 18(10Q25.2) WILD-TYPE"   "DEL PEAK 18(10Q25.2) MUTATED" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-EI-6512                     TCGA-EI-6513 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-EI-6514                     TCGA-EI-6881 
  "DEL PEAK 18(10Q25.2) MUTATED"   "DEL PEAK 18(10Q25.2) MUTATED" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-EI-6884                     TCGA-EI-6885 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"DEL PEAK 18(10Q25.2) WILD-TYPE"   "DEL PEAK 18(10Q25.2) MUTATED" 
                    TCGA-EI-7004                     TCGA-F5-6465 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-F5-6571                     TCGA-F5-6702 
"DEL PEAK 18(10Q25.2) WILD-TYPE"   "DEL PEAK 18(10Q25.2) MUTATED" 
                    TCGA-F5-6810                     TCGA-F5-6811 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-F5-6812                     TCGA-F5-6813 
  "DEL PEAK 18(10Q25.2) MUTATED" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
"DEL PEAK 18(10Q25.2) WILD-TYPE"   "DEL PEAK 18(10Q25.2) MUTATED" 
                    TCGA-G5-6233                     TCGA-G5-6235 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-G5-6572                     TCGA-G5-6641 
  "DEL PEAK 18(10Q25.2) MUTATED"   "DEL PEAK 18(10Q25.2) MUTATED" 
                    TCGA-AF-2687                     TCGA-AF-2689 
  "DEL PEAK 18(10Q25.2) MUTATED"   "DEL PEAK 18(10Q25.2) MUTATED" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
  "DEL PEAK 18(10Q25.2) MUTATED" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
  "DEL PEAK 18(10Q25.2) MUTATED" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 18(10Q25.2) WILD-TYPE"   "DEL PEAK 18(10Q25.2) MUTATED" 
                    TCGA-AG-3575                     TCGA-AG-3581 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-3582                     TCGA-AG-3583 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
  "DEL PEAK 18(10Q25.2) MUTATED" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
  "DEL PEAK 18(10Q25.2) MUTATED" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-4001                     TCGA-AG-4007 
  "DEL PEAK 18(10Q25.2) MUTATED" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-4008                     TCGA-AG-4022 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"DEL PEAK 18(10Q25.2) WILD-TYPE"   "DEL PEAK 18(10Q25.2) MUTATED" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
"DEL PEAK 18(10Q25.2) WILD-TYPE"   "DEL PEAK 18(10Q25.2) MUTATED" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
"DEL PEAK 18(10Q25.2) WILD-TYPE"   "DEL PEAK 18(10Q25.2) MUTATED" 
                    TCGA-AG-A014                     TCGA-AG-A015 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
  "DEL PEAK 18(10Q25.2) MUTATED" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
  "DEL PEAK 18(10Q25.2) MUTATED" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-A020                     TCGA-AG-A023 
  "DEL PEAK 18(10Q25.2) MUTATED" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
  "DEL PEAK 18(10Q25.2) MUTATED" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AH-6544                     TCGA-AH-6547 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AH-6897                     TCGA-AH-6903 
  "DEL PEAK 18(10Q25.2) MUTATED" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
  "DEL PEAK 18(10Q25.2) MUTATED" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
"DEL PEAK 18(10Q25.2) WILD-TYPE"   "DEL PEAK 18(10Q25.2) MUTATED" 
                    TCGA-CL-4957                     TCGA-CL-5917 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-CL-5918                     TCGA-DC-4745 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-DC-4749                     TCGA-DC-5337 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-DC-6155                     TCGA-DC-6156 
  "DEL PEAK 18(10Q25.2) MUTATED" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-DC-6157                     TCGA-DC-6158 
  "DEL PEAK 18(10Q25.2) MUTATED" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-DC-6160                     TCGA-DC-6681 
  "DEL PEAK 18(10Q25.2) MUTATED" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
  "DEL PEAK 18(10Q25.2) MUTATED"   "DEL PEAK 18(10Q25.2) MUTATED" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
  "DEL PEAK 18(10Q25.2) MUTATED"   "DEL PEAK 18(10Q25.2) MUTATED" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-EF-5830                     TCGA-EF-5831 
"DEL PEAK 18(10Q25.2) WILD-TYPE"   "DEL PEAK 18(10Q25.2) MUTATED" 
                    TCGA-EI-6506                     TCGA-EI-6507 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"DEL PEAK 18(10Q25.2) WILD-TYPE"   "DEL PEAK 18(10Q25.2) MUTATED" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-EI-6512                     TCGA-EI-6513 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-EI-6514                     TCGA-EI-6881 
  "DEL PEAK 18(10Q25.2) MUTATED"   "DEL PEAK 18(10Q25.2) MUTATED" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-EI-6884                     TCGA-EI-6885 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"DEL PEAK 18(10Q25.2) WILD-TYPE"   "DEL PEAK 18(10Q25.2) MUTATED" 
                    TCGA-EI-7004                     TCGA-F5-6465 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-F5-6571                     TCGA-F5-6702 
"DEL PEAK 18(10Q25.2) WILD-TYPE"   "DEL PEAK 18(10Q25.2) MUTATED" 
                    TCGA-F5-6810                     TCGA-F5-6811 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-F5-6812                     TCGA-F5-6813 
  "DEL PEAK 18(10Q25.2) MUTATED" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
"DEL PEAK 18(10Q25.2) WILD-TYPE"   "DEL PEAK 18(10Q25.2) MUTATED" 
                    TCGA-G5-6233                     TCGA-G5-6235 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-G5-6572                     TCGA-G5-6641 
  "DEL PEAK 18(10Q25.2) MUTATED"   "DEL PEAK 18(10Q25.2) MUTATED" 
                    TCGA-AF-2687                     TCGA-AF-2689 
  "DEL PEAK 18(10Q25.2) MUTATED"   "DEL PEAK 18(10Q25.2) MUTATED" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
  "DEL PEAK 18(10Q25.2) MUTATED" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
  "DEL PEAK 18(10Q25.2) MUTATED" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 18(10Q25.2) WILD-TYPE"   "DEL PEAK 18(10Q25.2) MUTATED" 
                    TCGA-AG-3575                     TCGA-AG-3581 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-3582                     TCGA-AG-3583 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
  "DEL PEAK 18(10Q25.2) MUTATED" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
  "DEL PEAK 18(10Q25.2) MUTATED" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-4001                     TCGA-AG-4007 
  "DEL PEAK 18(10Q25.2) MUTATED" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-4008                     TCGA-AG-4022 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"DEL PEAK 18(10Q25.2) WILD-TYPE"   "DEL PEAK 18(10Q25.2) MUTATED" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
"DEL PEAK 18(10Q25.2) WILD-TYPE"   "DEL PEAK 18(10Q25.2) MUTATED" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
"DEL PEAK 18(10Q25.2) WILD-TYPE"   "DEL PEAK 18(10Q25.2) MUTATED" 
                    TCGA-AG-A014                     TCGA-AG-A015 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
  "DEL PEAK 18(10Q25.2) MUTATED" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
  "DEL PEAK 18(10Q25.2) MUTATED" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-A020                     TCGA-AG-A023 
  "DEL PEAK 18(10Q25.2) MUTATED" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
  "DEL PEAK 18(10Q25.2) MUTATED" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AH-6544                     TCGA-AH-6547 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AH-6897                     TCGA-AH-6903 
  "DEL PEAK 18(10Q25.2) MUTATED" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
  "DEL PEAK 18(10Q25.2) MUTATED" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
"DEL PEAK 18(10Q25.2) WILD-TYPE"   "DEL PEAK 18(10Q25.2) MUTATED" 
                    TCGA-CL-4957                     TCGA-CL-5917 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-CL-5918                     TCGA-DC-4745 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-DC-4749                     TCGA-DC-5337 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-DC-6155                     TCGA-DC-6156 
  "DEL PEAK 18(10Q25.2) MUTATED" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-DC-6157                     TCGA-DC-6158 
  "DEL PEAK 18(10Q25.2) MUTATED" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-DC-6160                     TCGA-DC-6681 
  "DEL PEAK 18(10Q25.2) MUTATED" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
  "DEL PEAK 18(10Q25.2) MUTATED"   "DEL PEAK 18(10Q25.2) MUTATED" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
  "DEL PEAK 18(10Q25.2) MUTATED"   "DEL PEAK 18(10Q25.2) MUTATED" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-EF-5830                     TCGA-EF-5831 
"DEL PEAK 18(10Q25.2) WILD-TYPE"   "DEL PEAK 18(10Q25.2) MUTATED" 
                    TCGA-EI-6506                     TCGA-EI-6507 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"DEL PEAK 18(10Q25.2) WILD-TYPE"   "DEL PEAK 18(10Q25.2) MUTATED" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-EI-6512                     TCGA-EI-6513 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-EI-6514                     TCGA-EI-6881 
  "DEL PEAK 18(10Q25.2) MUTATED"   "DEL PEAK 18(10Q25.2) MUTATED" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-EI-6884                     TCGA-EI-6885 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"DEL PEAK 18(10Q25.2) WILD-TYPE"   "DEL PEAK 18(10Q25.2) MUTATED" 
                    TCGA-EI-7004                     TCGA-F5-6465 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-F5-6571                     TCGA-F5-6702 
"DEL PEAK 18(10Q25.2) WILD-TYPE"   "DEL PEAK 18(10Q25.2) MUTATED" 
                    TCGA-F5-6810                     TCGA-F5-6811 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-F5-6812                     TCGA-F5-6813 
  "DEL PEAK 18(10Q25.2) MUTATED" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
"DEL PEAK 18(10Q25.2) WILD-TYPE"   "DEL PEAK 18(10Q25.2) MUTATED" 
                    TCGA-G5-6233                     TCGA-G5-6235 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-G5-6572                     TCGA-G5-6641 
  "DEL PEAK 18(10Q25.2) MUTATED"   "DEL PEAK 18(10Q25.2) MUTATED" 
[1] "hr=" "2.3"
D43V2, continuous
                                vv
clus                             STAGE I STAGE II STAGE IIA STAGE IIB STAGE IIC
  DEL PEAK 18(10Q25.2) MUTATED         8        1        16         0         0
  DEL PEAK 18(10Q25.2) WILD-TYPE      22        7        22         2         2
                                vv
clus                             STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  DEL PEAK 18(10Q25.2) MUTATED           1          3          6          6
  DEL PEAK 18(10Q25.2) WILD-TYPE         4          6         17          8
                                vv
clus                             STAGE IV STAGE IVA
  DEL PEAK 18(10Q25.2) MUTATED          4         1
  DEL PEAK 18(10Q25.2) WILD-TYPE       13         8
D43V3, multiclass
                                vv
clus                             T1 T2 T3 T4
  DEL PEAK 18(10Q25.2) MUTATED    1  9 35  1
  DEL PEAK 18(10Q25.2) WILD-TYPE  8 20 74 13
D43V4, multiclass
    clus
vv   DEL PEAK 18(10Q25.2) MUTATED DEL PEAK 18(10Q25.2) WILD-TYPE
  T1                            1                              8
  T2                            9                             20
  T3                           35                             74
  T4                            1                             13
                                vv
clus                             N0 N1 N2
  DEL PEAK 18(10Q25.2) MUTATED   25 11 10
  DEL PEAK 18(10Q25.2) WILD-TYPE 58 34 22
D43V5, multiclass
    clus
vv   DEL PEAK 18(10Q25.2) MUTATED DEL PEAK 18(10Q25.2) WILD-TYPE
  N0                           25                             58
  N1                           11                             34
  N2                           10                             22
                                vv
clus                             M0 M1 M1A MX
  DEL PEAK 18(10Q25.2) MUTATED   39  4   0  2
  DEL PEAK 18(10Q25.2) WILD-TYPE 84 18   2 11
D43V6, multiclass
     clus
vv    DEL PEAK 18(10Q25.2) MUTATED DEL PEAK 18(10Q25.2) WILD-TYPE
  M0                            39                             84
  M1                             4                             18
  M1A                            0                              2
  MX                             2                             11
D43V7, binary
                                cls
clus                              0  1
  DEL PEAK 18(10Q25.2) MUTATED   22 25
  DEL PEAK 18(10Q25.2) WILD-TYPE 52 63
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 18(10Q25.2) MUTATED     22   25
  DEL PEAK 18(10Q25.2) WILD-TYPE   52   63
        clus
vv       DEL PEAK 18(10Q25.2) MUTATED DEL PEAK 18(10Q25.2) WILD-TYPE
  FEMALE                           22                             52
  MALE                             25                             63
D43V8, binary
                                cls
clus                               0   1
  DEL PEAK 18(10Q25.2) MUTATED    38   7
  DEL PEAK 18(10Q25.2) WILD-TYPE 105   6
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 18(10Q25.2) MUTATED     38    7
  DEL PEAK 18(10Q25.2) WILD-TYPE  105    6
                                clus
vv                               DEL PEAK 18(10Q25.2) MUTATED
  RECTAL ADENOCARCINOMA                                    38
  RECTAL MUCINOUS ADENOCARCINOMA                            7
                                clus
vv                               DEL PEAK 18(10Q25.2) WILD-TYPE
  RECTAL ADENOCARCINOMA                                     105
  RECTAL MUCINOUS ADENOCARCINOMA                              6
D43V9, binary
                                cls
clus                               0   1
  DEL PEAK 18(10Q25.2) MUTATED     4  43
  DEL PEAK 18(10Q25.2) WILD-TYPE   2 113
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 18(10Q25.2) MUTATED      4   43
  DEL PEAK 18(10Q25.2) WILD-TYPE    2  113
     clus
vv    DEL PEAK 18(10Q25.2) MUTATED DEL PEAK 18(10Q25.2) WILD-TYPE
  NO                             4                              2
  YES                           43                            113
                                vv
clus                             R0 R1 R2 RX
  DEL PEAK 18(10Q25.2) MUTATED   40  0  1  0
  DEL PEAK 18(10Q25.2) WILD-TYPE 81  2 11  3
D43V10, multiclass
    clus
vv   DEL PEAK 18(10Q25.2) MUTATED DEL PEAK 18(10Q25.2) WILD-TYPE
  R0                           40                             81
  R1                            0                              2
  R2                            1                             11
  RX                            0                              3
D43V11, continuous

Clustering(44) Variable = DEL PEAK 19(11Q22.3) MUTATION ANALYSIS
D44V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 19(11Q22.3) MUTATED   28  2
  DEL PEAK 19(11Q22.3) WILD-TYPE 89 11
  DEL PEAK 19(11Q22.3) MUTATED DEL PEAK 19(11Q22.3) WILD-TYPE 
                            30                            100 
  DEL PEAK 19(11Q22.3) MUTATED DEL PEAK 19(11Q22.3) WILD-TYPE 
                             2                             11 
$`DEL PEAK 19(11Q22.3) MUTATED`
TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-2693 TCGA-AF-4110 TCGA-AF-6136 TCGA-AF-6672 
       10.62        13.55        19.10        14.50        15.35        10.39 
TCGA-AG-3581 TCGA-AG-3587 TCGA-AG-3727 TCGA-AG-3896 TCGA-AG-A008 TCGA-AG-A01L 
        1.02         1.02         0.95         1.02        13.91        12.00 
TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A02X TCGA-AH-6544 TCGA-AH-6643 
       70.03        63.98        10.98        40.96         0.49         0.69 
TCGA-AH-6644 TCGA-BM-6198 TCGA-CL-4957 TCGA-DC-6155 TCGA-DC-6158 TCGA-DC-6160 
        0.72        10.19        13.97        14.01         6.97        30.05 
TCGA-DT-5265 TCGA-DY-A1DF TCGA-EI-6508 TCGA-EI-6509 TCGA-EI-6881 TCGA-EI-7004 
        5.29        24.13        20.91        17.00        16.37         8.45 

$`DEL PEAK 19(11Q22.3) WILD-TYPE`
TCGA-AF-2687 TCGA-AF-2689 TCGA-AF-2690 TCGA-AF-3400 TCGA-AF-3911 TCGA-AF-3913 
       24.13        17.95        17.23        12.72        25.02        10.39 
TCGA-AF-5654 TCGA-AF-6655 TCGA-AG-3575 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3586 
        8.45        11.67        12.00         1.02         2.01         1.02 
TCGA-AG-3599 TCGA-AG-3605 TCGA-AG-3726 TCGA-AG-3731 TCGA-AG-3742 TCGA-AG-3878 
        0.99         0.99         7.96         1.02         0.99         0.99 
TCGA-AG-3883 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 
        1.02         0.92         1.02         0.99         0.99         1.02 
TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-4022 TCGA-AG-A002 TCGA-AG-A00C 
        1.02         1.02         1.02         0.99        20.94         6.02 
TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 
       25.94        23.01        17.03        15.91        13.02         1.02 
TCGA-AG-A01J TCGA-AG-A01N TCGA-AG-A023 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G 
        1.02        12.00        51.98        49.94         1.94        38.93 
TCGA-AG-A02N TCGA-AG-A032 TCGA-AH-6547 TCGA-AH-6897 TCGA-AH-6903 TCGA-CI-6619 
       61.94        38.01         1.45         4.60         1.81         6.02 
TCGA-CI-6620 TCGA-CI-6622 TCGA-CI-6623 TCGA-CI-6624 TCGA-CL-5917 TCGA-CL-5918 
        6.02         6.94         9.37         4.70        60.00         7.99 
TCGA-DC-4745 TCGA-DC-4749 TCGA-DC-5337 TCGA-DC-5869 TCGA-DC-6154 TCGA-DC-6156 
       10.98        11.01        15.02        12.99        12.00        15.02 
TCGA-DC-6157 TCGA-DC-6681 TCGA-DC-6682 TCGA-DC-6683 TCGA-DY-A0XA TCGA-DY-A1DC 
       36.00        12.95        13.02        10.06       126.41        41.33 
TCGA-DY-A1DD TCGA-DY-A1DE TCGA-DY-A1DG TCGA-DY-A1H8 TCGA-EF-5830 TCGA-EF-5831 
       57.24       129.27        51.48        32.58         0.49         2.40 
TCGA-EI-6506 TCGA-EI-6507 TCGA-EI-6510 TCGA-EI-6511 TCGA-EI-6512 TCGA-EI-6513 
       20.55        19.96        18.28        15.85        17.69        16.34 
TCGA-EI-6514 TCGA-EI-6882 TCGA-EI-6883 TCGA-EI-6884 TCGA-EI-6885 TCGA-EI-6917 
       16.31         8.61        11.51        10.78        13.61        17.46 
TCGA-EI-7002 TCGA-F5-6465 TCGA-F5-6571 TCGA-F5-6702 TCGA-F5-6810 TCGA-F5-6811 
       11.97         3.39         0.85         2.17         0.39         1.02 
TCGA-F5-6812 TCGA-F5-6813 TCGA-F5-6814 TCGA-F5-6861 TCGA-F5-6863 TCGA-F5-6864 
        0.66         0.69         0.53         1.08         0.76         0.46 
TCGA-G5-6233 TCGA-G5-6235 TCGA-G5-6572 TCGA-G5-6641 
       18.25        55.76        47.08        26.43 

  DEL PEAK 19(11Q22.3) MUTATED DEL PEAK 19(11Q22.3) WILD-TYPE 
                          0.49                           0.39 
  DEL PEAK 19(11Q22.3) MUTATED DEL PEAK 19(11Q22.3) WILD-TYPE 
                         70.03                         129.27 
  DEL PEAK 19(11Q22.3) MUTATED DEL PEAK 19(11Q22.3) WILD-TYPE 
                        12.775                         10.880 
[1] "0.5 - 70.0 (12.8)"  "0.4 - 129.3 (10.9)"
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 19(11Q22.3) WILD-TYPE"   "DEL PEAK 19(11Q22.3) MUTATED" 
                    TCGA-AF-2692                     TCGA-AF-2693 
  "DEL PEAK 19(11Q22.3) MUTATED"   "DEL PEAK 19(11Q22.3) MUTATED" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 19(11Q22.3) WILD-TYPE"   "DEL PEAK 19(11Q22.3) MUTATED" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 19(11Q22.3) WILD-TYPE"   "DEL PEAK 19(11Q22.3) MUTATED" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 19(11Q22.3) WILD-TYPE"   "DEL PEAK 19(11Q22.3) MUTATED" 
                    TCGA-AG-3575                     TCGA-AG-3581 
"DEL PEAK 19(11Q22.3) WILD-TYPE"   "DEL PEAK 19(11Q22.3) MUTATED" 
                    TCGA-AG-3582                     TCGA-AG-3583 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"DEL PEAK 19(11Q22.3) WILD-TYPE"   "DEL PEAK 19(11Q22.3) MUTATED" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
"DEL PEAK 19(11Q22.3) WILD-TYPE"   "DEL PEAK 19(11Q22.3) MUTATED" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
  "DEL PEAK 19(11Q22.3) MUTATED" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-4001                     TCGA-AG-4007 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-4008                     TCGA-AG-4022 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"DEL PEAK 19(11Q22.3) WILD-TYPE"   "DEL PEAK 19(11Q22.3) MUTATED" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
  "DEL PEAK 19(11Q22.3) MUTATED" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
  "DEL PEAK 19(11Q22.3) MUTATED"   "DEL PEAK 19(11Q22.3) MUTATED" 
                    TCGA-AG-A020                     TCGA-AG-A023 
  "DEL PEAK 19(11Q22.3) MUTATED" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
  "DEL PEAK 19(11Q22.3) MUTATED" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AH-6544                     TCGA-AH-6547 
  "DEL PEAK 19(11Q22.3) MUTATED" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
  "DEL PEAK 19(11Q22.3) MUTATED"   "DEL PEAK 19(11Q22.3) MUTATED" 
                    TCGA-AH-6897                     TCGA-AH-6903 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
  "DEL PEAK 19(11Q22.3) MUTATED" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-CL-4957                     TCGA-CL-5917 
  "DEL PEAK 19(11Q22.3) MUTATED" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-CL-5918                     TCGA-DC-4745 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-DC-4749                     TCGA-DC-5337 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-DC-6155                     TCGA-DC-6156 
  "DEL PEAK 19(11Q22.3) MUTATED" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-DC-6157                     TCGA-DC-6158 
"DEL PEAK 19(11Q22.3) WILD-TYPE"   "DEL PEAK 19(11Q22.3) MUTATED" 
                    TCGA-DC-6160                     TCGA-DC-6681 
  "DEL PEAK 19(11Q22.3) MUTATED" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
  "DEL PEAK 19(11Q22.3) MUTATED" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
"DEL PEAK 19(11Q22.3) WILD-TYPE"   "DEL PEAK 19(11Q22.3) MUTATED" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-EF-5830                     TCGA-EF-5831 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-EI-6506                     TCGA-EI-6507 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
  "DEL PEAK 19(11Q22.3) MUTATED"   "DEL PEAK 19(11Q22.3) MUTATED" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-EI-6512                     TCGA-EI-6513 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-EI-6514                     TCGA-EI-6881 
"DEL PEAK 19(11Q22.3) WILD-TYPE"   "DEL PEAK 19(11Q22.3) MUTATED" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-EI-6884                     TCGA-EI-6885 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-EI-7004                     TCGA-F5-6465 
  "DEL PEAK 19(11Q22.3) MUTATED" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-F5-6571                     TCGA-F5-6702 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-F5-6810                     TCGA-F5-6811 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-F5-6812                     TCGA-F5-6813 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-G5-6233                     TCGA-G5-6235 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 19(11Q22.3) WILD-TYPE"   "DEL PEAK 19(11Q22.3) MUTATED" 
                    TCGA-AF-2692                     TCGA-AF-2693 
  "DEL PEAK 19(11Q22.3) MUTATED"   "DEL PEAK 19(11Q22.3) MUTATED" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 19(11Q22.3) WILD-TYPE"   "DEL PEAK 19(11Q22.3) MUTATED" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 19(11Q22.3) WILD-TYPE"   "DEL PEAK 19(11Q22.3) MUTATED" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 19(11Q22.3) WILD-TYPE"   "DEL PEAK 19(11Q22.3) MUTATED" 
                    TCGA-AG-3575                     TCGA-AG-3581 
"DEL PEAK 19(11Q22.3) WILD-TYPE"   "DEL PEAK 19(11Q22.3) MUTATED" 
                    TCGA-AG-3582                     TCGA-AG-3583 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"DEL PEAK 19(11Q22.3) WILD-TYPE"   "DEL PEAK 19(11Q22.3) MUTATED" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
"DEL PEAK 19(11Q22.3) WILD-TYPE"   "DEL PEAK 19(11Q22.3) MUTATED" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
  "DEL PEAK 19(11Q22.3) MUTATED" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-4001                     TCGA-AG-4007 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-4008                     TCGA-AG-4022 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"DEL PEAK 19(11Q22.3) WILD-TYPE"   "DEL PEAK 19(11Q22.3) MUTATED" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
  "DEL PEAK 19(11Q22.3) MUTATED" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
  "DEL PEAK 19(11Q22.3) MUTATED"   "DEL PEAK 19(11Q22.3) MUTATED" 
                    TCGA-AG-A020                     TCGA-AG-A023 
  "DEL PEAK 19(11Q22.3) MUTATED" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
  "DEL PEAK 19(11Q22.3) MUTATED" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AH-6544                     TCGA-AH-6547 
  "DEL PEAK 19(11Q22.3) MUTATED" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
  "DEL PEAK 19(11Q22.3) MUTATED"   "DEL PEAK 19(11Q22.3) MUTATED" 
                    TCGA-AH-6897                     TCGA-AH-6903 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
  "DEL PEAK 19(11Q22.3) MUTATED" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-CL-4957                     TCGA-CL-5917 
  "DEL PEAK 19(11Q22.3) MUTATED" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-CL-5918                     TCGA-DC-4745 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-DC-4749                     TCGA-DC-5337 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-DC-6155                     TCGA-DC-6156 
  "DEL PEAK 19(11Q22.3) MUTATED" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-DC-6157                     TCGA-DC-6158 
"DEL PEAK 19(11Q22.3) WILD-TYPE"   "DEL PEAK 19(11Q22.3) MUTATED" 
                    TCGA-DC-6160                     TCGA-DC-6681 
  "DEL PEAK 19(11Q22.3) MUTATED" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
  "DEL PEAK 19(11Q22.3) MUTATED" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
"DEL PEAK 19(11Q22.3) WILD-TYPE"   "DEL PEAK 19(11Q22.3) MUTATED" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-EF-5830                     TCGA-EF-5831 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-EI-6506                     TCGA-EI-6507 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
  "DEL PEAK 19(11Q22.3) MUTATED"   "DEL PEAK 19(11Q22.3) MUTATED" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-EI-6512                     TCGA-EI-6513 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-EI-6514                     TCGA-EI-6881 
"DEL PEAK 19(11Q22.3) WILD-TYPE"   "DEL PEAK 19(11Q22.3) MUTATED" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-EI-6884                     TCGA-EI-6885 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-EI-7004                     TCGA-F5-6465 
  "DEL PEAK 19(11Q22.3) MUTATED" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-F5-6571                     TCGA-F5-6702 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-F5-6810                     TCGA-F5-6811 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-F5-6812                     TCGA-F5-6813 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-G5-6233                     TCGA-G5-6235 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 19(11Q22.3) WILD-TYPE"   "DEL PEAK 19(11Q22.3) MUTATED" 
                    TCGA-AF-2692                     TCGA-AF-2693 
  "DEL PEAK 19(11Q22.3) MUTATED"   "DEL PEAK 19(11Q22.3) MUTATED" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 19(11Q22.3) WILD-TYPE"   "DEL PEAK 19(11Q22.3) MUTATED" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 19(11Q22.3) WILD-TYPE"   "DEL PEAK 19(11Q22.3) MUTATED" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 19(11Q22.3) WILD-TYPE"   "DEL PEAK 19(11Q22.3) MUTATED" 
                    TCGA-AG-3575                     TCGA-AG-3581 
"DEL PEAK 19(11Q22.3) WILD-TYPE"   "DEL PEAK 19(11Q22.3) MUTATED" 
                    TCGA-AG-3582                     TCGA-AG-3583 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"DEL PEAK 19(11Q22.3) WILD-TYPE"   "DEL PEAK 19(11Q22.3) MUTATED" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
"DEL PEAK 19(11Q22.3) WILD-TYPE"   "DEL PEAK 19(11Q22.3) MUTATED" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
  "DEL PEAK 19(11Q22.3) MUTATED" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-4001                     TCGA-AG-4007 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-4008                     TCGA-AG-4022 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"DEL PEAK 19(11Q22.3) WILD-TYPE"   "DEL PEAK 19(11Q22.3) MUTATED" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
  "DEL PEAK 19(11Q22.3) MUTATED" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
  "DEL PEAK 19(11Q22.3) MUTATED"   "DEL PEAK 19(11Q22.3) MUTATED" 
                    TCGA-AG-A020                     TCGA-AG-A023 
  "DEL PEAK 19(11Q22.3) MUTATED" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
  "DEL PEAK 19(11Q22.3) MUTATED" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AH-6544                     TCGA-AH-6547 
  "DEL PEAK 19(11Q22.3) MUTATED" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
  "DEL PEAK 19(11Q22.3) MUTATED"   "DEL PEAK 19(11Q22.3) MUTATED" 
                    TCGA-AH-6897                     TCGA-AH-6903 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
  "DEL PEAK 19(11Q22.3) MUTATED" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-CL-4957                     TCGA-CL-5917 
  "DEL PEAK 19(11Q22.3) MUTATED" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-CL-5918                     TCGA-DC-4745 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-DC-4749                     TCGA-DC-5337 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-DC-6155                     TCGA-DC-6156 
  "DEL PEAK 19(11Q22.3) MUTATED" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-DC-6157                     TCGA-DC-6158 
"DEL PEAK 19(11Q22.3) WILD-TYPE"   "DEL PEAK 19(11Q22.3) MUTATED" 
                    TCGA-DC-6160                     TCGA-DC-6681 
  "DEL PEAK 19(11Q22.3) MUTATED" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
  "DEL PEAK 19(11Q22.3) MUTATED" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
"DEL PEAK 19(11Q22.3) WILD-TYPE"   "DEL PEAK 19(11Q22.3) MUTATED" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-EF-5830                     TCGA-EF-5831 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-EI-6506                     TCGA-EI-6507 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
  "DEL PEAK 19(11Q22.3) MUTATED"   "DEL PEAK 19(11Q22.3) MUTATED" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-EI-6512                     TCGA-EI-6513 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-EI-6514                     TCGA-EI-6881 
"DEL PEAK 19(11Q22.3) WILD-TYPE"   "DEL PEAK 19(11Q22.3) MUTATED" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-EI-6884                     TCGA-EI-6885 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-EI-7004                     TCGA-F5-6465 
  "DEL PEAK 19(11Q22.3) MUTATED" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-F5-6571                     TCGA-F5-6702 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-F5-6810                     TCGA-F5-6811 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-F5-6812                     TCGA-F5-6813 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-G5-6233                     TCGA-G5-6235 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
[1] "hr=" "1.5"
D44V2, continuous
                                vv
clus                             STAGE I STAGE II STAGE IIA STAGE IIB STAGE IIC
  DEL PEAK 19(11Q22.3) MUTATED        10        3         6         0         0
  DEL PEAK 19(11Q22.3) WILD-TYPE      20        5        32         2         2
                                vv
clus                             STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  DEL PEAK 19(11Q22.3) MUTATED           2          3          5          4
  DEL PEAK 19(11Q22.3) WILD-TYPE         3          6         18         10
                                vv
clus                             STAGE IV STAGE IVA
  DEL PEAK 19(11Q22.3) MUTATED          1         2
  DEL PEAK 19(11Q22.3) WILD-TYPE       16         7
D44V3, multiclass
                                vv
clus                             T1 T2 T3 T4
  DEL PEAK 19(11Q22.3) MUTATED    1 10 24  3
  DEL PEAK 19(11Q22.3) WILD-TYPE  8 19 85 11
D44V4, multiclass
    clus
vv   DEL PEAK 19(11Q22.3) MUTATED DEL PEAK 19(11Q22.3) WILD-TYPE
  T1                            1                              8
  T2                           10                             19
  T3                           24                             85
  T4                            3                             11
                                vv
clus                             N0 N1 N2
  DEL PEAK 19(11Q22.3) MUTATED   19 11  7
  DEL PEAK 19(11Q22.3) WILD-TYPE 64 34 25
D44V5, multiclass
    clus
vv   DEL PEAK 19(11Q22.3) MUTATED DEL PEAK 19(11Q22.3) WILD-TYPE
  N0                           19                             64
  N1                           11                             34
  N2                            7                             25
                                vv
clus                             M0 M1 M1A MX
  DEL PEAK 19(11Q22.3) MUTATED   31  1   0  5
  DEL PEAK 19(11Q22.3) WILD-TYPE 92 21   2  8
D44V6, multiclass
     clus
vv    DEL PEAK 19(11Q22.3) MUTATED DEL PEAK 19(11Q22.3) WILD-TYPE
  M0                            31                             92
  M1                             1                             21
  M1A                            0                              2
  MX                             5                              8
D44V7, binary
                                cls
clus                              0  1
  DEL PEAK 19(11Q22.3) MUTATED   19 19
  DEL PEAK 19(11Q22.3) WILD-TYPE 55 69
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 19(11Q22.3) MUTATED     19   19
  DEL PEAK 19(11Q22.3) WILD-TYPE   55   69
        clus
vv       DEL PEAK 19(11Q22.3) MUTATED DEL PEAK 19(11Q22.3) WILD-TYPE
  FEMALE                           19                             55
  MALE                             19                             69
D44V8, binary
                                cls
clus                               0   1
  DEL PEAK 19(11Q22.3) MUTATED    28   6
  DEL PEAK 19(11Q22.3) WILD-TYPE 115   7
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 19(11Q22.3) MUTATED     28    6
  DEL PEAK 19(11Q22.3) WILD-TYPE  115    7
                                clus
vv                               DEL PEAK 19(11Q22.3) MUTATED
  RECTAL ADENOCARCINOMA                                    28
  RECTAL MUCINOUS ADENOCARCINOMA                            6
                                clus
vv                               DEL PEAK 19(11Q22.3) WILD-TYPE
  RECTAL ADENOCARCINOMA                                     115
  RECTAL MUCINOUS ADENOCARCINOMA                              7
D44V9, binary
                                cls
clus                               0   1
  DEL PEAK 19(11Q22.3) MUTATED     3  35
  DEL PEAK 19(11Q22.3) WILD-TYPE   3 121
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 19(11Q22.3) MUTATED      3   35
  DEL PEAK 19(11Q22.3) WILD-TYPE    3  121
     clus
vv    DEL PEAK 19(11Q22.3) MUTATED DEL PEAK 19(11Q22.3) WILD-TYPE
  NO                             3                              3
  YES                           35                            121
                                vv
clus                             R0 R1 R2 RX
  DEL PEAK 19(11Q22.3) MUTATED   29  0  0  1
  DEL PEAK 19(11Q22.3) WILD-TYPE 92  2 12  2
D44V10, multiclass
    clus
vv   DEL PEAK 19(11Q22.3) MUTATED DEL PEAK 19(11Q22.3) WILD-TYPE
  R0                           29                             92
  R1                            0                              2
  R2                            0                             12
  RX                            1                              2
D44V11, continuous

Clustering(45) Variable = DEL PEAK 20(12P13.1) MUTATION ANALYSIS
D45V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 20(12P13.1) MUTATED   20  5
  DEL PEAK 20(12P13.1) WILD-TYPE 97  8
  DEL PEAK 20(12P13.1) MUTATED DEL PEAK 20(12P13.1) WILD-TYPE 
                            25                            105 
  DEL PEAK 20(12P13.1) MUTATED DEL PEAK 20(12P13.1) WILD-TYPE 
                             5                              8 
$`DEL PEAK 20(12P13.1) MUTATED`
TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-2693 TCGA-AF-3913 TCGA-AF-4110 TCGA-AF-6136 
       10.62        13.55        19.10        10.39        14.50        15.35 
TCGA-AF-6655 TCGA-AG-3731 TCGA-AG-A00C TCGA-AG-A01W TCGA-AG-A026 TCGA-AH-6544 
       11.67         1.02         6.02        70.03         1.94         0.49 
TCGA-CI-6620 TCGA-DC-4749 TCGA-DC-6155 TCGA-DC-6158 TCGA-DY-A1DF TCGA-DY-A1DG 
        6.02        11.01        14.01         6.97        24.13        51.48 
TCGA-EI-6508 TCGA-EI-6509 TCGA-EI-6514 TCGA-EI-6881 TCGA-F5-6702 TCGA-F5-6812 
       20.91        17.00        16.31        16.37         2.17         0.66 
TCGA-G5-6641 
       26.43 

$`DEL PEAK 20(12P13.1) WILD-TYPE`
TCGA-AF-2687 TCGA-AF-2689 TCGA-AF-2690 TCGA-AF-3400 TCGA-AF-3911 TCGA-AF-5654 
       24.13        17.95        17.23        12.72        25.02         8.45 
TCGA-AF-6672 TCGA-AG-3575 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3586 
       10.39        12.00         1.02         1.02         2.01         1.02 
TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3605 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3742 
        1.02         0.99         0.99         7.96         0.95         0.99 
TCGA-AG-3878 TCGA-AG-3883 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 
        0.99         1.02         0.92         1.02         0.99         0.99 
TCGA-AG-3896 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-4022 
        1.02         1.02         1.02         1.02         1.02         0.99 
TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 
       20.94        13.91        25.94        23.01        17.03        15.91 
TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01J TCGA-AG-A01L TCGA-AG-A01N TCGA-AG-A01Y 
       13.02         1.02         1.02        12.00        12.00        63.98 
TCGA-AG-A020 TCGA-AG-A023 TCGA-AG-A025 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X 
       10.98        51.98        49.94        38.93        61.94        40.96 
TCGA-AG-A032 TCGA-AH-6547 TCGA-AH-6643 TCGA-AH-6644 TCGA-AH-6897 TCGA-AH-6903 
       38.01         1.45         0.69         0.72         4.60         1.81 
TCGA-BM-6198 TCGA-CI-6619 TCGA-CI-6622 TCGA-CI-6623 TCGA-CI-6624 TCGA-CL-4957 
       10.19         6.02         6.94         9.37         4.70        13.97 
TCGA-CL-5917 TCGA-CL-5918 TCGA-DC-4745 TCGA-DC-5337 TCGA-DC-5869 TCGA-DC-6154 
       60.00         7.99        10.98        15.02        12.99        12.00 
TCGA-DC-6156 TCGA-DC-6157 TCGA-DC-6160 TCGA-DC-6681 TCGA-DC-6682 TCGA-DC-6683 
       15.02        36.00        30.05        12.95        13.02        10.06 
TCGA-DT-5265 TCGA-DY-A0XA TCGA-DY-A1DC TCGA-DY-A1DD TCGA-DY-A1DE TCGA-DY-A1H8 
        5.29       126.41        41.33        57.24       129.27        32.58 
TCGA-EF-5830 TCGA-EF-5831 TCGA-EI-6506 TCGA-EI-6507 TCGA-EI-6510 TCGA-EI-6511 
        0.49         2.40        20.55        19.96        18.28        15.85 
TCGA-EI-6512 TCGA-EI-6513 TCGA-EI-6882 TCGA-EI-6883 TCGA-EI-6884 TCGA-EI-6885 
       17.69        16.34         8.61        11.51        10.78        13.61 
TCGA-EI-6917 TCGA-EI-7002 TCGA-EI-7004 TCGA-F5-6465 TCGA-F5-6571 TCGA-F5-6810 
       17.46        11.97         8.45         3.39         0.85         0.39 
TCGA-F5-6811 TCGA-F5-6813 TCGA-F5-6814 TCGA-F5-6861 TCGA-F5-6863 TCGA-F5-6864 
        1.02         0.69         0.53         1.08         0.76         0.46 
TCGA-G5-6233 TCGA-G5-6235 TCGA-G5-6572 
       18.25        55.76        47.08 

  DEL PEAK 20(12P13.1) MUTATED DEL PEAK 20(12P13.1) WILD-TYPE 
                          0.49                           0.39 
  DEL PEAK 20(12P13.1) MUTATED DEL PEAK 20(12P13.1) WILD-TYPE 
                         70.03                         129.27 
  DEL PEAK 20(12P13.1) MUTATED DEL PEAK 20(12P13.1) WILD-TYPE 
                         13.55                          10.78 
[1] "0.5 - 70.0 (13.6)"  "0.4 - 129.3 (10.8)"
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 20(12P13.1) WILD-TYPE"   "DEL PEAK 20(12P13.1) MUTATED" 
                    TCGA-AF-2692                     TCGA-AF-2693 
  "DEL PEAK 20(12P13.1) MUTATED"   "DEL PEAK 20(12P13.1) MUTATED" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
  "DEL PEAK 20(12P13.1) MUTATED"   "DEL PEAK 20(12P13.1) MUTATED" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 20(12P13.1) WILD-TYPE"   "DEL PEAK 20(12P13.1) MUTATED" 
                    TCGA-AF-6655                     TCGA-AF-6672 
  "DEL PEAK 20(12P13.1) MUTATED" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-3575                     TCGA-AG-3581 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-3582                     TCGA-AG-3583 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-3731                     TCGA-AG-3742 
  "DEL PEAK 20(12P13.1) MUTATED" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-4001                     TCGA-AG-4007 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-4008                     TCGA-AG-4022 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
  "DEL PEAK 20(12P13.1) MUTATED" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
  "DEL PEAK 20(12P13.1) MUTATED" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"DEL PEAK 20(12P13.1) WILD-TYPE"   "DEL PEAK 20(12P13.1) MUTATED" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AH-6544                     TCGA-AH-6547 
  "DEL PEAK 20(12P13.1) MUTATED" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AH-6897                     TCGA-AH-6903 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-CI-6620                     TCGA-CI-6622 
  "DEL PEAK 20(12P13.1) MUTATED" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-CL-4957                     TCGA-CL-5917 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-CL-5918                     TCGA-DC-4745 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-DC-4749                     TCGA-DC-5337 
  "DEL PEAK 20(12P13.1) MUTATED" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-DC-6155                     TCGA-DC-6156 
  "DEL PEAK 20(12P13.1) MUTATED" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-DC-6157                     TCGA-DC-6158 
"DEL PEAK 20(12P13.1) WILD-TYPE"   "DEL PEAK 20(12P13.1) MUTATED" 
                    TCGA-DC-6160                     TCGA-DC-6681 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
"DEL PEAK 20(12P13.1) WILD-TYPE"   "DEL PEAK 20(12P13.1) MUTATED" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
  "DEL PEAK 20(12P13.1) MUTATED" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-EF-5830                     TCGA-EF-5831 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-EI-6506                     TCGA-EI-6507 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
  "DEL PEAK 20(12P13.1) MUTATED"   "DEL PEAK 20(12P13.1) MUTATED" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-EI-6512                     TCGA-EI-6513 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-EI-6514                     TCGA-EI-6881 
  "DEL PEAK 20(12P13.1) MUTATED"   "DEL PEAK 20(12P13.1) MUTATED" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-EI-6884                     TCGA-EI-6885 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-EI-7004                     TCGA-F5-6465 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-F5-6571                     TCGA-F5-6702 
"DEL PEAK 20(12P13.1) WILD-TYPE"   "DEL PEAK 20(12P13.1) MUTATED" 
                    TCGA-F5-6810                     TCGA-F5-6811 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-F5-6812                     TCGA-F5-6813 
  "DEL PEAK 20(12P13.1) MUTATED" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-G5-6233                     TCGA-G5-6235 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"DEL PEAK 20(12P13.1) WILD-TYPE"   "DEL PEAK 20(12P13.1) MUTATED" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 20(12P13.1) WILD-TYPE"   "DEL PEAK 20(12P13.1) MUTATED" 
                    TCGA-AF-2692                     TCGA-AF-2693 
  "DEL PEAK 20(12P13.1) MUTATED"   "DEL PEAK 20(12P13.1) MUTATED" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
  "DEL PEAK 20(12P13.1) MUTATED"   "DEL PEAK 20(12P13.1) MUTATED" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 20(12P13.1) WILD-TYPE"   "DEL PEAK 20(12P13.1) MUTATED" 
                    TCGA-AF-6655                     TCGA-AF-6672 
  "DEL PEAK 20(12P13.1) MUTATED" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-3575                     TCGA-AG-3581 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-3582                     TCGA-AG-3583 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-3731                     TCGA-AG-3742 
  "DEL PEAK 20(12P13.1) MUTATED" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-4001                     TCGA-AG-4007 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-4008                     TCGA-AG-4022 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
  "DEL PEAK 20(12P13.1) MUTATED" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
  "DEL PEAK 20(12P13.1) MUTATED" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"DEL PEAK 20(12P13.1) WILD-TYPE"   "DEL PEAK 20(12P13.1) MUTATED" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AH-6544                     TCGA-AH-6547 
  "DEL PEAK 20(12P13.1) MUTATED" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AH-6897                     TCGA-AH-6903 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-CI-6620                     TCGA-CI-6622 
  "DEL PEAK 20(12P13.1) MUTATED" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-CL-4957                     TCGA-CL-5917 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-CL-5918                     TCGA-DC-4745 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-DC-4749                     TCGA-DC-5337 
  "DEL PEAK 20(12P13.1) MUTATED" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-DC-6155                     TCGA-DC-6156 
  "DEL PEAK 20(12P13.1) MUTATED" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-DC-6157                     TCGA-DC-6158 
"DEL PEAK 20(12P13.1) WILD-TYPE"   "DEL PEAK 20(12P13.1) MUTATED" 
                    TCGA-DC-6160                     TCGA-DC-6681 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
"DEL PEAK 20(12P13.1) WILD-TYPE"   "DEL PEAK 20(12P13.1) MUTATED" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
  "DEL PEAK 20(12P13.1) MUTATED" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-EF-5830                     TCGA-EF-5831 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-EI-6506                     TCGA-EI-6507 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
  "DEL PEAK 20(12P13.1) MUTATED"   "DEL PEAK 20(12P13.1) MUTATED" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-EI-6512                     TCGA-EI-6513 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-EI-6514                     TCGA-EI-6881 
  "DEL PEAK 20(12P13.1) MUTATED"   "DEL PEAK 20(12P13.1) MUTATED" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-EI-6884                     TCGA-EI-6885 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-EI-7004                     TCGA-F5-6465 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-F5-6571                     TCGA-F5-6702 
"DEL PEAK 20(12P13.1) WILD-TYPE"   "DEL PEAK 20(12P13.1) MUTATED" 
                    TCGA-F5-6810                     TCGA-F5-6811 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-F5-6812                     TCGA-F5-6813 
  "DEL PEAK 20(12P13.1) MUTATED" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-G5-6233                     TCGA-G5-6235 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"DEL PEAK 20(12P13.1) WILD-TYPE"   "DEL PEAK 20(12P13.1) MUTATED" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 20(12P13.1) WILD-TYPE"   "DEL PEAK 20(12P13.1) MUTATED" 
                    TCGA-AF-2692                     TCGA-AF-2693 
  "DEL PEAK 20(12P13.1) MUTATED"   "DEL PEAK 20(12P13.1) MUTATED" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
  "DEL PEAK 20(12P13.1) MUTATED"   "DEL PEAK 20(12P13.1) MUTATED" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 20(12P13.1) WILD-TYPE"   "DEL PEAK 20(12P13.1) MUTATED" 
                    TCGA-AF-6655                     TCGA-AF-6672 
  "DEL PEAK 20(12P13.1) MUTATED" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-3575                     TCGA-AG-3581 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-3582                     TCGA-AG-3583 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-3731                     TCGA-AG-3742 
  "DEL PEAK 20(12P13.1) MUTATED" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-4001                     TCGA-AG-4007 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-4008                     TCGA-AG-4022 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
  "DEL PEAK 20(12P13.1) MUTATED" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
  "DEL PEAK 20(12P13.1) MUTATED" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"DEL PEAK 20(12P13.1) WILD-TYPE"   "DEL PEAK 20(12P13.1) MUTATED" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AH-6544                     TCGA-AH-6547 
  "DEL PEAK 20(12P13.1) MUTATED" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AH-6897                     TCGA-AH-6903 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-CI-6620                     TCGA-CI-6622 
  "DEL PEAK 20(12P13.1) MUTATED" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-CL-4957                     TCGA-CL-5917 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-CL-5918                     TCGA-DC-4745 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-DC-4749                     TCGA-DC-5337 
  "DEL PEAK 20(12P13.1) MUTATED" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-DC-6155                     TCGA-DC-6156 
  "DEL PEAK 20(12P13.1) MUTATED" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-DC-6157                     TCGA-DC-6158 
"DEL PEAK 20(12P13.1) WILD-TYPE"   "DEL PEAK 20(12P13.1) MUTATED" 
                    TCGA-DC-6160                     TCGA-DC-6681 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
"DEL PEAK 20(12P13.1) WILD-TYPE"   "DEL PEAK 20(12P13.1) MUTATED" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
  "DEL PEAK 20(12P13.1) MUTATED" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-EF-5830                     TCGA-EF-5831 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-EI-6506                     TCGA-EI-6507 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
  "DEL PEAK 20(12P13.1) MUTATED"   "DEL PEAK 20(12P13.1) MUTATED" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-EI-6512                     TCGA-EI-6513 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-EI-6514                     TCGA-EI-6881 
  "DEL PEAK 20(12P13.1) MUTATED"   "DEL PEAK 20(12P13.1) MUTATED" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-EI-6884                     TCGA-EI-6885 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-EI-7004                     TCGA-F5-6465 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-F5-6571                     TCGA-F5-6702 
"DEL PEAK 20(12P13.1) WILD-TYPE"   "DEL PEAK 20(12P13.1) MUTATED" 
                    TCGA-F5-6810                     TCGA-F5-6811 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-F5-6812                     TCGA-F5-6813 
  "DEL PEAK 20(12P13.1) MUTATED" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-G5-6233                     TCGA-G5-6235 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"DEL PEAK 20(12P13.1) WILD-TYPE"   "DEL PEAK 20(12P13.1) MUTATED" 
[1] "hr=" "3.1"
D45V2, continuous
                                vv
clus                             STAGE I STAGE II STAGE IIA STAGE IIB STAGE IIC
  DEL PEAK 20(12P13.1) MUTATED         4        3         7         0         0
  DEL PEAK 20(12P13.1) WILD-TYPE      26        5        31         2         2
                                vv
clus                             STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  DEL PEAK 20(12P13.1) MUTATED           0          4          4          3
  DEL PEAK 20(12P13.1) WILD-TYPE         5          5         19         11
                                vv
clus                             STAGE IV STAGE IVA
  DEL PEAK 20(12P13.1) MUTATED          2         4
  DEL PEAK 20(12P13.1) WILD-TYPE       15         5
D45V3, multiclass
                                vv
clus                             T1 T2 T3 T4
  DEL PEAK 20(12P13.1) MUTATED    2  5 24  2
  DEL PEAK 20(12P13.1) WILD-TYPE  7 24 85 12
D45V4, multiclass
    clus
vv   DEL PEAK 20(12P13.1) MUTATED DEL PEAK 20(12P13.1) WILD-TYPE
  T1                            2                              7
  T2                            5                             24
  T3                           24                             85
  T4                            2                             12
                                vv
clus                             N0 N1 N2
  DEL PEAK 20(12P13.1) MUTATED   14 14  5
  DEL PEAK 20(12P13.1) WILD-TYPE 69 31 27
D45V5, multiclass
    clus
vv   DEL PEAK 20(12P13.1) MUTATED DEL PEAK 20(12P13.1) WILD-TYPE
  N0                           14                             69
  N1                           14                             31
  N2                            5                             27
                                vv
clus                              M0  M1 M1A  MX
  DEL PEAK 20(12P13.1) MUTATED    22   7   0   4
  DEL PEAK 20(12P13.1) WILD-TYPE 101  15   2   9
D45V6, multiclass
     clus
vv    DEL PEAK 20(12P13.1) MUTATED DEL PEAK 20(12P13.1) WILD-TYPE
  M0                            22                            101
  M1                             7                             15
  M1A                            0                              2
  MX                             4                              9
D45V7, binary
                                cls
clus                              0  1
  DEL PEAK 20(12P13.1) MUTATED   16 17
  DEL PEAK 20(12P13.1) WILD-TYPE 58 71
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 20(12P13.1) MUTATED     16   17
  DEL PEAK 20(12P13.1) WILD-TYPE   58   71
        clus
vv       DEL PEAK 20(12P13.1) MUTATED DEL PEAK 20(12P13.1) WILD-TYPE
  FEMALE                           16                             58
  MALE                             17                             71
D45V8, binary
                                cls
clus                               0   1
  DEL PEAK 20(12P13.1) MUTATED    29   1
  DEL PEAK 20(12P13.1) WILD-TYPE 114  12
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 20(12P13.1) MUTATED     29    1
  DEL PEAK 20(12P13.1) WILD-TYPE  114   12
                                clus
vv                               DEL PEAK 20(12P13.1) MUTATED
  RECTAL ADENOCARCINOMA                                    29
  RECTAL MUCINOUS ADENOCARCINOMA                            1
                                clus
vv                               DEL PEAK 20(12P13.1) WILD-TYPE
  RECTAL ADENOCARCINOMA                                     114
  RECTAL MUCINOUS ADENOCARCINOMA                             12
D45V9, binary
                                cls
clus                               0   1
  DEL PEAK 20(12P13.1) MUTATED     1  32
  DEL PEAK 20(12P13.1) WILD-TYPE   5 124
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 20(12P13.1) MUTATED      1   32
  DEL PEAK 20(12P13.1) WILD-TYPE    5  124
     clus
vv    DEL PEAK 20(12P13.1) MUTATED DEL PEAK 20(12P13.1) WILD-TYPE
  NO                             1                              5
  YES                           32                            124
                                vv
clus                             R0 R1 R2 RX
  DEL PEAK 20(12P13.1) MUTATED   24  1  2  0
  DEL PEAK 20(12P13.1) WILD-TYPE 97  1 10  3
D45V10, multiclass
    clus
vv   DEL PEAK 20(12P13.1) MUTATED DEL PEAK 20(12P13.1) WILD-TYPE
  R0                           24                             97
  R1                            1                              1
  R2                            2                             10
  RX                            0                              3
D45V11, continuous

Clustering(46) Variable = DEL PEAK 21(12Q22) MUTATION ANALYSIS
D46V1, survival
                              sevent
clus2                            0   1
  DEL PEAK 21(12Q22) MUTATED    16   3
  DEL PEAK 21(12Q22) WILD-TYPE 101  10
  DEL PEAK 21(12Q22) MUTATED DEL PEAK 21(12Q22) WILD-TYPE 
                          19                          111 
  DEL PEAK 21(12Q22) MUTATED DEL PEAK 21(12Q22) WILD-TYPE 
                           3                           10 
$`DEL PEAK 21(12Q22) MUTATED`
TCGA-AF-2691 TCGA-AF-3400 TCGA-AF-4110 TCGA-AF-6136 TCGA-AG-4001 TCGA-AG-A014 
       10.62        12.72        14.50        15.35         1.02        15.91 
TCGA-AG-A032 TCGA-AH-6544 TCGA-DC-6155 TCGA-DC-6158 TCGA-DY-A1DE TCGA-DY-A1DF 
       38.01         0.49        14.01         6.97       129.27        24.13 
TCGA-EI-6509 TCGA-EI-6514 TCGA-EI-6881 TCGA-EI-6883 TCGA-F5-6702 TCGA-F5-6812 
       17.00        16.31        16.37        11.51         2.17         0.66 
TCGA-G5-6233 
       18.25 

$`DEL PEAK 21(12Q22) WILD-TYPE`
TCGA-AF-2687 TCGA-AF-2689 TCGA-AF-2690 TCGA-AF-2692 TCGA-AF-2693 TCGA-AF-3911 
       24.13        17.95        17.23        13.55        19.10        25.02 
TCGA-AF-3913 TCGA-AF-5654 TCGA-AF-6655 TCGA-AF-6672 TCGA-AG-3575 TCGA-AG-3581 
       10.39         8.45        11.67        10.39        12.00         1.02 
TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3586 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3605 
        1.02         2.01         1.02         1.02         0.99         0.99 
TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3731 TCGA-AG-3742 TCGA-AG-3878 TCGA-AG-3883 
        7.96         0.95         1.02         0.99         0.99         1.02 
TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3896 TCGA-AG-3999 
        0.92         1.02         0.99         0.99         1.02         1.02 
TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-4022 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C 
        1.02         1.02         0.99        20.94        13.91         6.02 
TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01J 
       25.94        23.01        17.03        13.02         1.02         1.02 
TCGA-AG-A01L TCGA-AG-A01N TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A023 
       12.00        12.00        70.03        63.98        10.98        51.98 
TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AH-6547 
       49.94         1.94        38.93        61.94        40.96         1.45 
TCGA-AH-6643 TCGA-AH-6644 TCGA-AH-6897 TCGA-AH-6903 TCGA-BM-6198 TCGA-CI-6619 
        0.69         0.72         4.60         1.81        10.19         6.02 
TCGA-CI-6620 TCGA-CI-6622 TCGA-CI-6623 TCGA-CI-6624 TCGA-CL-4957 TCGA-CL-5917 
        6.02         6.94         9.37         4.70        13.97        60.00 
TCGA-CL-5918 TCGA-DC-4745 TCGA-DC-4749 TCGA-DC-5337 TCGA-DC-5869 TCGA-DC-6154 
        7.99        10.98        11.01        15.02        12.99        12.00 
TCGA-DC-6156 TCGA-DC-6157 TCGA-DC-6160 TCGA-DC-6681 TCGA-DC-6682 TCGA-DC-6683 
       15.02        36.00        30.05        12.95        13.02        10.06 
TCGA-DT-5265 TCGA-DY-A0XA TCGA-DY-A1DC TCGA-DY-A1DD TCGA-DY-A1DG TCGA-DY-A1H8 
        5.29       126.41        41.33        57.24        51.48        32.58 
TCGA-EF-5830 TCGA-EF-5831 TCGA-EI-6506 TCGA-EI-6507 TCGA-EI-6508 TCGA-EI-6510 
        0.49         2.40        20.55        19.96        20.91        18.28 
TCGA-EI-6511 TCGA-EI-6512 TCGA-EI-6513 TCGA-EI-6882 TCGA-EI-6884 TCGA-EI-6885 
       15.85        17.69        16.34         8.61        10.78        13.61 
TCGA-EI-6917 TCGA-EI-7002 TCGA-EI-7004 TCGA-F5-6465 TCGA-F5-6571 TCGA-F5-6810 
       17.46        11.97         8.45         3.39         0.85         0.39 
TCGA-F5-6811 TCGA-F5-6813 TCGA-F5-6814 TCGA-F5-6861 TCGA-F5-6863 TCGA-F5-6864 
        1.02         0.69         0.53         1.08         0.76         0.46 
TCGA-G5-6235 TCGA-G5-6572 TCGA-G5-6641 
       55.76        47.08        26.43 

  DEL PEAK 21(12Q22) MUTATED DEL PEAK 21(12Q22) WILD-TYPE 
                        0.49                         0.39 
  DEL PEAK 21(12Q22) MUTATED DEL PEAK 21(12Q22) WILD-TYPE 
                      129.27                       126.41 
  DEL PEAK 21(12Q22) MUTATED DEL PEAK 21(12Q22) WILD-TYPE 
                       14.50                        10.39 
[1] "0.5 - 129.3 (14.5)" "0.4 - 126.4 (10.4)"
                  TCGA-AF-2687                   TCGA-AF-2689 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-AF-2690                   TCGA-AF-2691 
"DEL PEAK 21(12Q22) WILD-TYPE"   "DEL PEAK 21(12Q22) MUTATED" 
                  TCGA-AF-2692                   TCGA-AF-2693 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-AF-3400                   TCGA-AF-3911 
  "DEL PEAK 21(12Q22) MUTATED" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-AF-3913                   TCGA-AF-4110 
"DEL PEAK 21(12Q22) WILD-TYPE"   "DEL PEAK 21(12Q22) MUTATED" 
                  TCGA-AF-5654                   TCGA-AF-6136 
"DEL PEAK 21(12Q22) WILD-TYPE"   "DEL PEAK 21(12Q22) MUTATED" 
                  TCGA-AF-6655                   TCGA-AF-6672 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-AG-3575                   TCGA-AG-3581 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-AG-3582                   TCGA-AG-3583 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-AG-3586                   TCGA-AG-3587 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-AG-3599                   TCGA-AG-3605 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-AG-3726                   TCGA-AG-3727 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-AG-3731                   TCGA-AG-3742 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-AG-3878                   TCGA-AG-3883 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-AG-3887                   TCGA-AG-3892 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-AG-3893                   TCGA-AG-3894 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-AG-3896                   TCGA-AG-3999 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-AG-4001                   TCGA-AG-4007 
  "DEL PEAK 21(12Q22) MUTATED" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-AG-4008                   TCGA-AG-4022 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-AG-A002                   TCGA-AG-A008 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-AG-A00C                   TCGA-AG-A00H 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-AG-A00Y                   TCGA-AG-A011 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-AG-A014                   TCGA-AG-A015 
  "DEL PEAK 21(12Q22) MUTATED" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-AG-A016                   TCGA-AG-A01J 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-AG-A01L                   TCGA-AG-A01N 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-AG-A01W                   TCGA-AG-A01Y 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-AG-A020                   TCGA-AG-A023 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-AG-A025                   TCGA-AG-A026 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-AG-A02G                   TCGA-AG-A02N 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-AG-A02X                   TCGA-AG-A032 
"DEL PEAK 21(12Q22) WILD-TYPE"   "DEL PEAK 21(12Q22) MUTATED" 
                  TCGA-AH-6544                   TCGA-AH-6547 
  "DEL PEAK 21(12Q22) MUTATED" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-AH-6643                   TCGA-AH-6644 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-AH-6897                   TCGA-AH-6903 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-BM-6198                   TCGA-CI-6619 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-CI-6620                   TCGA-CI-6622 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-CI-6623                   TCGA-CI-6624 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-CL-4957                   TCGA-CL-5917 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-CL-5918                   TCGA-DC-4745 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-DC-4749                   TCGA-DC-5337 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-DC-5869                   TCGA-DC-6154 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-DC-6155                   TCGA-DC-6156 
  "DEL PEAK 21(12Q22) MUTATED" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-DC-6157                   TCGA-DC-6158 
"DEL PEAK 21(12Q22) WILD-TYPE"   "DEL PEAK 21(12Q22) MUTATED" 
                  TCGA-DC-6160                   TCGA-DC-6681 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-DC-6682                   TCGA-DC-6683 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-DT-5265                   TCGA-DY-A0XA 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-DY-A1DC                   TCGA-DY-A1DD 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-DY-A1DE                   TCGA-DY-A1DF 
  "DEL PEAK 21(12Q22) MUTATED"   "DEL PEAK 21(12Q22) MUTATED" 
                  TCGA-DY-A1DG                   TCGA-DY-A1H8 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-EF-5830                   TCGA-EF-5831 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-EI-6506                   TCGA-EI-6507 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-EI-6508                   TCGA-EI-6509 
"DEL PEAK 21(12Q22) WILD-TYPE"   "DEL PEAK 21(12Q22) MUTATED" 
                  TCGA-EI-6510                   TCGA-EI-6511 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-EI-6512                   TCGA-EI-6513 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-EI-6514                   TCGA-EI-6881 
  "DEL PEAK 21(12Q22) MUTATED"   "DEL PEAK 21(12Q22) MUTATED" 
                  TCGA-EI-6882                   TCGA-EI-6883 
"DEL PEAK 21(12Q22) WILD-TYPE"   "DEL PEAK 21(12Q22) MUTATED" 
                  TCGA-EI-6884                   TCGA-EI-6885 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-EI-6917                   TCGA-EI-7002 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-EI-7004                   TCGA-F5-6465 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-F5-6571                   TCGA-F5-6702 
"DEL PEAK 21(12Q22) WILD-TYPE"   "DEL PEAK 21(12Q22) MUTATED" 
                  TCGA-F5-6810                   TCGA-F5-6811 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-F5-6812                   TCGA-F5-6813 
  "DEL PEAK 21(12Q22) MUTATED" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-F5-6814                   TCGA-F5-6861 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-F5-6863                   TCGA-F5-6864 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-G5-6233                   TCGA-G5-6235 
  "DEL PEAK 21(12Q22) MUTATED" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-G5-6572                   TCGA-G5-6641 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-AF-2687                   TCGA-AF-2689 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-AF-2690                   TCGA-AF-2691 
"DEL PEAK 21(12Q22) WILD-TYPE"   "DEL PEAK 21(12Q22) MUTATED" 
                  TCGA-AF-2692                   TCGA-AF-2693 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-AF-3400                   TCGA-AF-3911 
  "DEL PEAK 21(12Q22) MUTATED" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-AF-3913                   TCGA-AF-4110 
"DEL PEAK 21(12Q22) WILD-TYPE"   "DEL PEAK 21(12Q22) MUTATED" 
                  TCGA-AF-5654                   TCGA-AF-6136 
"DEL PEAK 21(12Q22) WILD-TYPE"   "DEL PEAK 21(12Q22) MUTATED" 
                  TCGA-AF-6655                   TCGA-AF-6672 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-AG-3575                   TCGA-AG-3581 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-AG-3582                   TCGA-AG-3583 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-AG-3586                   TCGA-AG-3587 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-AG-3599                   TCGA-AG-3605 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-AG-3726                   TCGA-AG-3727 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-AG-3731                   TCGA-AG-3742 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-AG-3878                   TCGA-AG-3883 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-AG-3887                   TCGA-AG-3892 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-AG-3893                   TCGA-AG-3894 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-AG-3896                   TCGA-AG-3999 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-AG-4001                   TCGA-AG-4007 
  "DEL PEAK 21(12Q22) MUTATED" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-AG-4008                   TCGA-AG-4022 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-AG-A002                   TCGA-AG-A008 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-AG-A00C                   TCGA-AG-A00H 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-AG-A00Y                   TCGA-AG-A011 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-AG-A014                   TCGA-AG-A015 
  "DEL PEAK 21(12Q22) MUTATED" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-AG-A016                   TCGA-AG-A01J 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-AG-A01L                   TCGA-AG-A01N 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-AG-A01W                   TCGA-AG-A01Y 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-AG-A020                   TCGA-AG-A023 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-AG-A025                   TCGA-AG-A026 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-AG-A02G                   TCGA-AG-A02N 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-AG-A02X                   TCGA-AG-A032 
"DEL PEAK 21(12Q22) WILD-TYPE"   "DEL PEAK 21(12Q22) MUTATED" 
                  TCGA-AH-6544                   TCGA-AH-6547 
  "DEL PEAK 21(12Q22) MUTATED" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-AH-6643                   TCGA-AH-6644 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-AH-6897                   TCGA-AH-6903 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-BM-6198                   TCGA-CI-6619 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-CI-6620                   TCGA-CI-6622 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-CI-6623                   TCGA-CI-6624 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-CL-4957                   TCGA-CL-5917 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-CL-5918                   TCGA-DC-4745 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-DC-4749                   TCGA-DC-5337 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-DC-5869                   TCGA-DC-6154 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-DC-6155                   TCGA-DC-6156 
  "DEL PEAK 21(12Q22) MUTATED" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-DC-6157                   TCGA-DC-6158 
"DEL PEAK 21(12Q22) WILD-TYPE"   "DEL PEAK 21(12Q22) MUTATED" 
                  TCGA-DC-6160                   TCGA-DC-6681 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-DC-6682                   TCGA-DC-6683 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-DT-5265                   TCGA-DY-A0XA 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-DY-A1DC                   TCGA-DY-A1DD 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-DY-A1DE                   TCGA-DY-A1DF 
  "DEL PEAK 21(12Q22) MUTATED"   "DEL PEAK 21(12Q22) MUTATED" 
                  TCGA-DY-A1DG                   TCGA-DY-A1H8 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-EF-5830                   TCGA-EF-5831 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-EI-6506                   TCGA-EI-6507 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-EI-6508                   TCGA-EI-6509 
"DEL PEAK 21(12Q22) WILD-TYPE"   "DEL PEAK 21(12Q22) MUTATED" 
                  TCGA-EI-6510                   TCGA-EI-6511 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-EI-6512                   TCGA-EI-6513 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-EI-6514                   TCGA-EI-6881 
  "DEL PEAK 21(12Q22) MUTATED"   "DEL PEAK 21(12Q22) MUTATED" 
                  TCGA-EI-6882                   TCGA-EI-6883 
"DEL PEAK 21(12Q22) WILD-TYPE"   "DEL PEAK 21(12Q22) MUTATED" 
                  TCGA-EI-6884                   TCGA-EI-6885 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-EI-6917                   TCGA-EI-7002 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-EI-7004                   TCGA-F5-6465 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-F5-6571                   TCGA-F5-6702 
"DEL PEAK 21(12Q22) WILD-TYPE"   "DEL PEAK 21(12Q22) MUTATED" 
                  TCGA-F5-6810                   TCGA-F5-6811 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-F5-6812                   TCGA-F5-6813 
  "DEL PEAK 21(12Q22) MUTATED" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-F5-6814                   TCGA-F5-6861 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-F5-6863                   TCGA-F5-6864 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-G5-6233                   TCGA-G5-6235 
  "DEL PEAK 21(12Q22) MUTATED" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-G5-6572                   TCGA-G5-6641 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-AF-2687                   TCGA-AF-2689 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-AF-2690                   TCGA-AF-2691 
"DEL PEAK 21(12Q22) WILD-TYPE"   "DEL PEAK 21(12Q22) MUTATED" 
                  TCGA-AF-2692                   TCGA-AF-2693 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-AF-3400                   TCGA-AF-3911 
  "DEL PEAK 21(12Q22) MUTATED" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-AF-3913                   TCGA-AF-4110 
"DEL PEAK 21(12Q22) WILD-TYPE"   "DEL PEAK 21(12Q22) MUTATED" 
                  TCGA-AF-5654                   TCGA-AF-6136 
"DEL PEAK 21(12Q22) WILD-TYPE"   "DEL PEAK 21(12Q22) MUTATED" 
                  TCGA-AF-6655                   TCGA-AF-6672 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-AG-3575                   TCGA-AG-3581 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-AG-3582                   TCGA-AG-3583 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-AG-3586                   TCGA-AG-3587 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-AG-3599                   TCGA-AG-3605 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-AG-3726                   TCGA-AG-3727 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-AG-3731                   TCGA-AG-3742 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-AG-3878                   TCGA-AG-3883 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-AG-3887                   TCGA-AG-3892 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-AG-3893                   TCGA-AG-3894 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-AG-3896                   TCGA-AG-3999 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-AG-4001                   TCGA-AG-4007 
  "DEL PEAK 21(12Q22) MUTATED" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-AG-4008                   TCGA-AG-4022 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-AG-A002                   TCGA-AG-A008 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-AG-A00C                   TCGA-AG-A00H 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-AG-A00Y                   TCGA-AG-A011 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-AG-A014                   TCGA-AG-A015 
  "DEL PEAK 21(12Q22) MUTATED" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-AG-A016                   TCGA-AG-A01J 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-AG-A01L                   TCGA-AG-A01N 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-AG-A01W                   TCGA-AG-A01Y 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-AG-A020                   TCGA-AG-A023 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-AG-A025                   TCGA-AG-A026 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-AG-A02G                   TCGA-AG-A02N 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-AG-A02X                   TCGA-AG-A032 
"DEL PEAK 21(12Q22) WILD-TYPE"   "DEL PEAK 21(12Q22) MUTATED" 
                  TCGA-AH-6544                   TCGA-AH-6547 
  "DEL PEAK 21(12Q22) MUTATED" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-AH-6643                   TCGA-AH-6644 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-AH-6897                   TCGA-AH-6903 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-BM-6198                   TCGA-CI-6619 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-CI-6620                   TCGA-CI-6622 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-CI-6623                   TCGA-CI-6624 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-CL-4957                   TCGA-CL-5917 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-CL-5918                   TCGA-DC-4745 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-DC-4749                   TCGA-DC-5337 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-DC-5869                   TCGA-DC-6154 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-DC-6155                   TCGA-DC-6156 
  "DEL PEAK 21(12Q22) MUTATED" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-DC-6157                   TCGA-DC-6158 
"DEL PEAK 21(12Q22) WILD-TYPE"   "DEL PEAK 21(12Q22) MUTATED" 
                  TCGA-DC-6160                   TCGA-DC-6681 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-DC-6682                   TCGA-DC-6683 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-DT-5265                   TCGA-DY-A0XA 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-DY-A1DC                   TCGA-DY-A1DD 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-DY-A1DE                   TCGA-DY-A1DF 
  "DEL PEAK 21(12Q22) MUTATED"   "DEL PEAK 21(12Q22) MUTATED" 
                  TCGA-DY-A1DG                   TCGA-DY-A1H8 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-EF-5830                   TCGA-EF-5831 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-EI-6506                   TCGA-EI-6507 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-EI-6508                   TCGA-EI-6509 
"DEL PEAK 21(12Q22) WILD-TYPE"   "DEL PEAK 21(12Q22) MUTATED" 
                  TCGA-EI-6510                   TCGA-EI-6511 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-EI-6512                   TCGA-EI-6513 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-EI-6514                   TCGA-EI-6881 
  "DEL PEAK 21(12Q22) MUTATED"   "DEL PEAK 21(12Q22) MUTATED" 
                  TCGA-EI-6882                   TCGA-EI-6883 
"DEL PEAK 21(12Q22) WILD-TYPE"   "DEL PEAK 21(12Q22) MUTATED" 
                  TCGA-EI-6884                   TCGA-EI-6885 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-EI-6917                   TCGA-EI-7002 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-EI-7004                   TCGA-F5-6465 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-F5-6571                   TCGA-F5-6702 
"DEL PEAK 21(12Q22) WILD-TYPE"   "DEL PEAK 21(12Q22) MUTATED" 
                  TCGA-F5-6810                   TCGA-F5-6811 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-F5-6812                   TCGA-F5-6813 
  "DEL PEAK 21(12Q22) MUTATED" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-F5-6814                   TCGA-F5-6861 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-F5-6863                   TCGA-F5-6864 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-G5-6233                   TCGA-G5-6235 
  "DEL PEAK 21(12Q22) MUTATED" "DEL PEAK 21(12Q22) WILD-TYPE" 
                  TCGA-G5-6572                   TCGA-G5-6641 
"DEL PEAK 21(12Q22) WILD-TYPE" "DEL PEAK 21(12Q22) WILD-TYPE" 
[1] "hr=" "2.2"
D46V2, continuous
                              vv
clus                           STAGE I STAGE II STAGE IIA STAGE IIB STAGE IIC
  DEL PEAK 21(12Q22) MUTATED         4        1         7         0         2
  DEL PEAK 21(12Q22) WILD-TYPE      26        7        31         2         0
                              vv
clus                           STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  DEL PEAK 21(12Q22) MUTATED           0          2          3          2
  DEL PEAK 21(12Q22) WILD-TYPE         5          7         20         12
                              vv
clus                           STAGE IV STAGE IVA
  DEL PEAK 21(12Q22) MUTATED          0         2
  DEL PEAK 21(12Q22) WILD-TYPE       17         7
D46V3, multiclass
                              vv
clus                           T1 T2 T3 T4
  DEL PEAK 21(12Q22) MUTATED    1  4 18  1
  DEL PEAK 21(12Q22) WILD-TYPE  8 25 91 13
D46V4, multiclass
    clus
vv   DEL PEAK 21(12Q22) MUTATED DEL PEAK 21(12Q22) WILD-TYPE
  T1                          1                            8
  T2                          4                           25
  T3                         18                           91
  T4                          1                           13
                              vv
clus                           N0 N1 N2
  DEL PEAK 21(12Q22) MUTATED   13  7  4
  DEL PEAK 21(12Q22) WILD-TYPE 70 38 28
D46V5, multiclass
    clus
vv   DEL PEAK 21(12Q22) MUTATED DEL PEAK 21(12Q22) WILD-TYPE
  N0                         13                           70
  N1                          7                           38
  N2                          4                           28
                              vv
clus                            M0  M1 M1A  MX
  DEL PEAK 21(12Q22) MUTATED    20   2   0   2
  DEL PEAK 21(12Q22) WILD-TYPE 103  20   2  11
D46V6, multiclass
     clus
vv    DEL PEAK 21(12Q22) MUTATED DEL PEAK 21(12Q22) WILD-TYPE
  M0                          20                          103
  M1                           2                           20
  M1A                          0                            2
  MX                           2                           11
D46V7, binary
                              cls
clus                            0  1
  DEL PEAK 21(12Q22) MUTATED   10 14
  DEL PEAK 21(12Q22) WILD-TYPE 64 74
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 21(12Q22) MUTATED     10   14
  DEL PEAK 21(12Q22) WILD-TYPE   64   74
        clus
vv       DEL PEAK 21(12Q22) MUTATED DEL PEAK 21(12Q22) WILD-TYPE
  FEMALE                         10                           64
  MALE                           14                           74
D46V8, binary
                              cls
clus                             0   1
  DEL PEAK 21(12Q22) MUTATED    22   1
  DEL PEAK 21(12Q22) WILD-TYPE 121  12
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 21(12Q22) MUTATED     22    1
  DEL PEAK 21(12Q22) WILD-TYPE  121   12
                                clus
vv                               DEL PEAK 21(12Q22) MUTATED
  RECTAL ADENOCARCINOMA                                  22
  RECTAL MUCINOUS ADENOCARCINOMA                          1
                                clus
vv                               DEL PEAK 21(12Q22) WILD-TYPE
  RECTAL ADENOCARCINOMA                                   121
  RECTAL MUCINOUS ADENOCARCINOMA                           12
D46V9, binary
                              cls
clus                             0   1
  DEL PEAK 21(12Q22) MUTATED     2  22
  DEL PEAK 21(12Q22) WILD-TYPE   4 134
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 21(12Q22) MUTATED      2   22
  DEL PEAK 21(12Q22) WILD-TYPE    4  134
     clus
vv    DEL PEAK 21(12Q22) MUTATED DEL PEAK 21(12Q22) WILD-TYPE
  NO                           2                            4
  YES                         22                          134
                              vv
clus                            R0  R1  R2  RX
  DEL PEAK 21(12Q22) MUTATED    20   0   0   0
  DEL PEAK 21(12Q22) WILD-TYPE 101   2  12   3
D46V10, multiclass
    clus
vv   DEL PEAK 21(12Q22) MUTATED DEL PEAK 21(12Q22) WILD-TYPE
  R0                         20                          101
  R1                          0                            2
  R2                          0                           12
  RX                          0                            3
D46V11, continuous

Clustering(47) Variable = DEL PEAK 22(14Q11.2) MUTATION ANALYSIS
D47V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 22(14Q11.2) MUTATED   49  6
  DEL PEAK 22(14Q11.2) WILD-TYPE 68  7
  DEL PEAK 22(14Q11.2) MUTATED DEL PEAK 22(14Q11.2) WILD-TYPE 
                            55                             75 
  DEL PEAK 22(14Q11.2) MUTATED DEL PEAK 22(14Q11.2) WILD-TYPE 
                             6                              7 
$`DEL PEAK 22(14Q11.2) MUTATED`
TCGA-AF-2689 TCGA-AF-2692 TCGA-AF-2693 TCGA-AF-3400 TCGA-AF-3911 TCGA-AF-6672 
       17.95        13.55        19.10        12.72        25.02        10.39 
TCGA-AG-3581 TCGA-AG-3727 TCGA-AG-3742 TCGA-AG-3883 TCGA-AG-3893 TCGA-AG-3896 
        1.02         0.95         0.99         1.02         0.99         1.02 
TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y 
        1.02         1.02         1.02         6.02        25.94        23.01 
TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A032 TCGA-AH-6544 TCGA-BM-6198 TCGA-CI-6619 
        1.94        38.93        38.01         0.49        10.19         6.02 
TCGA-CI-6620 TCGA-CI-6623 TCGA-CI-6624 TCGA-CL-4957 TCGA-CL-5918 TCGA-DC-4749 
        6.02         9.37         4.70        13.97         7.99        11.01 
TCGA-DC-5869 TCGA-DC-6155 TCGA-DC-6157 TCGA-DC-6158 TCGA-DC-6682 TCGA-DC-6683 
       12.99        14.01        36.00         6.97        13.02        10.06 
TCGA-DY-A1DE TCGA-DY-A1DF TCGA-DY-A1DG TCGA-EI-6506 TCGA-EI-6508 TCGA-EI-6509 
      129.27        24.13        51.48        20.55        20.91        17.00 
TCGA-EI-6513 TCGA-EI-6514 TCGA-EI-6881 TCGA-EI-6884 TCGA-EI-7002 TCGA-F5-6571 
       16.34        16.31        16.37        10.78        11.97         0.85 
TCGA-F5-6810 TCGA-F5-6811 TCGA-F5-6812 TCGA-F5-6863 TCGA-G5-6233 TCGA-G5-6235 
        0.39         1.02         0.66         0.76        18.25        55.76 
TCGA-G5-6641 
       26.43 

$`DEL PEAK 22(14Q11.2) WILD-TYPE`
TCGA-AF-2687 TCGA-AF-2690 TCGA-AF-2691 TCGA-AF-3913 TCGA-AF-4110 TCGA-AF-5654 
       24.13        17.23        10.62        10.39        14.50         8.45 
TCGA-AF-6136 TCGA-AF-6655 TCGA-AG-3575 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3586 
       15.35        11.67        12.00         1.02         2.01         1.02 
TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3605 TCGA-AG-3726 TCGA-AG-3731 TCGA-AG-3878 
        1.02         0.99         0.99         7.96         1.02         0.99 
TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3894 TCGA-AG-4007 TCGA-AG-4022 TCGA-AG-A002 
        0.92         1.02         0.99         1.02         0.99        20.94 
TCGA-AG-A008 TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01J 
       13.91        17.03        15.91        13.02         1.02         1.02 
TCGA-AG-A01L TCGA-AG-A01N TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A023 
       12.00        12.00        70.03        63.98        10.98        51.98 
TCGA-AG-A025 TCGA-AG-A02N TCGA-AG-A02X TCGA-AH-6547 TCGA-AH-6643 TCGA-AH-6644 
       49.94        61.94        40.96         1.45         0.69         0.72 
TCGA-AH-6897 TCGA-AH-6903 TCGA-CI-6622 TCGA-CL-5917 TCGA-DC-4745 TCGA-DC-5337 
        4.60         1.81         6.94        60.00        10.98        15.02 
TCGA-DC-6154 TCGA-DC-6156 TCGA-DC-6160 TCGA-DC-6681 TCGA-DT-5265 TCGA-DY-A0XA 
       12.00        15.02        30.05        12.95         5.29       126.41 
TCGA-DY-A1DC TCGA-DY-A1DD TCGA-DY-A1H8 TCGA-EF-5830 TCGA-EF-5831 TCGA-EI-6507 
       41.33        57.24        32.58         0.49         2.40        19.96 
TCGA-EI-6510 TCGA-EI-6511 TCGA-EI-6512 TCGA-EI-6882 TCGA-EI-6883 TCGA-EI-6885 
       18.28        15.85        17.69         8.61        11.51        13.61 
TCGA-EI-6917 TCGA-EI-7004 TCGA-F5-6465 TCGA-F5-6702 TCGA-F5-6813 TCGA-F5-6814 
       17.46         8.45         3.39         2.17         0.69         0.53 
TCGA-F5-6861 TCGA-F5-6864 TCGA-G5-6572 
        1.08         0.46        47.08 

  DEL PEAK 22(14Q11.2) MUTATED DEL PEAK 22(14Q11.2) WILD-TYPE 
                          0.39                           0.46 
  DEL PEAK 22(14Q11.2) MUTATED DEL PEAK 22(14Q11.2) WILD-TYPE 
                        129.27                         126.41 
  DEL PEAK 22(14Q11.2) MUTATED DEL PEAK 22(14Q11.2) WILD-TYPE 
                         11.01                          10.98 
[1] "0.4 - 129.3 (11.0)" "0.5 - 126.4 (11.0)"
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK 22(14Q11.2) WILD-TYPE"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
  "DEL PEAK 22(14Q11.2) MUTATED"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-AF-3400                     TCGA-AF-3911 
  "DEL PEAK 22(14Q11.2) MUTATED"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 22(14Q11.2) WILD-TYPE"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-AG-3575                     TCGA-AG-3581 
"DEL PEAK 22(14Q11.2) WILD-TYPE"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-AG-3582                     TCGA-AG-3583 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
"DEL PEAK 22(14Q11.2) WILD-TYPE"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"DEL PEAK 22(14Q11.2) WILD-TYPE"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"DEL PEAK 22(14Q11.2) WILD-TYPE"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
  "DEL PEAK 22(14Q11.2) MUTATED" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
  "DEL PEAK 22(14Q11.2) MUTATED"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-AG-4001                     TCGA-AG-4007 
  "DEL PEAK 22(14Q11.2) MUTATED" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-4008                     TCGA-AG-4022 
  "DEL PEAK 22(14Q11.2) MUTATED" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
  "DEL PEAK 22(14Q11.2) MUTATED"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
  "DEL PEAK 22(14Q11.2) MUTATED" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"DEL PEAK 22(14Q11.2) WILD-TYPE"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
  "DEL PEAK 22(14Q11.2) MUTATED" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
"DEL PEAK 22(14Q11.2) WILD-TYPE"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-AH-6544                     TCGA-AH-6547 
  "DEL PEAK 22(14Q11.2) MUTATED" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AH-6897                     TCGA-AH-6903 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
  "DEL PEAK 22(14Q11.2) MUTATED"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-CI-6620                     TCGA-CI-6622 
  "DEL PEAK 22(14Q11.2) MUTATED" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
  "DEL PEAK 22(14Q11.2) MUTATED"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-CL-4957                     TCGA-CL-5917 
  "DEL PEAK 22(14Q11.2) MUTATED" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-CL-5918                     TCGA-DC-4745 
  "DEL PEAK 22(14Q11.2) MUTATED" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-DC-4749                     TCGA-DC-5337 
  "DEL PEAK 22(14Q11.2) MUTATED" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
  "DEL PEAK 22(14Q11.2) MUTATED" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-DC-6155                     TCGA-DC-6156 
  "DEL PEAK 22(14Q11.2) MUTATED" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-DC-6157                     TCGA-DC-6158 
  "DEL PEAK 22(14Q11.2) MUTATED"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-DC-6160                     TCGA-DC-6681 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
  "DEL PEAK 22(14Q11.2) MUTATED"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
  "DEL PEAK 22(14Q11.2) MUTATED"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
  "DEL PEAK 22(14Q11.2) MUTATED" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-EF-5830                     TCGA-EF-5831 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-EI-6506                     TCGA-EI-6507 
  "DEL PEAK 22(14Q11.2) MUTATED" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
  "DEL PEAK 22(14Q11.2) MUTATED"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-EI-6512                     TCGA-EI-6513 
"DEL PEAK 22(14Q11.2) WILD-TYPE"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-EI-6514                     TCGA-EI-6881 
  "DEL PEAK 22(14Q11.2) MUTATED"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-EI-6884                     TCGA-EI-6885 
  "DEL PEAK 22(14Q11.2) MUTATED" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"DEL PEAK 22(14Q11.2) WILD-TYPE"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-EI-7004                     TCGA-F5-6465 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-F5-6571                     TCGA-F5-6702 
  "DEL PEAK 22(14Q11.2) MUTATED" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-F5-6810                     TCGA-F5-6811 
  "DEL PEAK 22(14Q11.2) MUTATED"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-F5-6812                     TCGA-F5-6813 
  "DEL PEAK 22(14Q11.2) MUTATED" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
  "DEL PEAK 22(14Q11.2) MUTATED" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-G5-6233                     TCGA-G5-6235 
  "DEL PEAK 22(14Q11.2) MUTATED"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"DEL PEAK 22(14Q11.2) WILD-TYPE"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK 22(14Q11.2) WILD-TYPE"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
  "DEL PEAK 22(14Q11.2) MUTATED"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-AF-3400                     TCGA-AF-3911 
  "DEL PEAK 22(14Q11.2) MUTATED"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 22(14Q11.2) WILD-TYPE"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-AG-3575                     TCGA-AG-3581 
"DEL PEAK 22(14Q11.2) WILD-TYPE"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-AG-3582                     TCGA-AG-3583 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
"DEL PEAK 22(14Q11.2) WILD-TYPE"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"DEL PEAK 22(14Q11.2) WILD-TYPE"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"DEL PEAK 22(14Q11.2) WILD-TYPE"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
  "DEL PEAK 22(14Q11.2) MUTATED" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
  "DEL PEAK 22(14Q11.2) MUTATED"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-AG-4001                     TCGA-AG-4007 
  "DEL PEAK 22(14Q11.2) MUTATED" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-4008                     TCGA-AG-4022 
  "DEL PEAK 22(14Q11.2) MUTATED" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
  "DEL PEAK 22(14Q11.2) MUTATED"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
  "DEL PEAK 22(14Q11.2) MUTATED" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"DEL PEAK 22(14Q11.2) WILD-TYPE"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
  "DEL PEAK 22(14Q11.2) MUTATED" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
"DEL PEAK 22(14Q11.2) WILD-TYPE"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-AH-6544                     TCGA-AH-6547 
  "DEL PEAK 22(14Q11.2) MUTATED" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AH-6897                     TCGA-AH-6903 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
  "DEL PEAK 22(14Q11.2) MUTATED"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-CI-6620                     TCGA-CI-6622 
  "DEL PEAK 22(14Q11.2) MUTATED" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
  "DEL PEAK 22(14Q11.2) MUTATED"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-CL-4957                     TCGA-CL-5917 
  "DEL PEAK 22(14Q11.2) MUTATED" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-CL-5918                     TCGA-DC-4745 
  "DEL PEAK 22(14Q11.2) MUTATED" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-DC-4749                     TCGA-DC-5337 
  "DEL PEAK 22(14Q11.2) MUTATED" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
  "DEL PEAK 22(14Q11.2) MUTATED" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-DC-6155                     TCGA-DC-6156 
  "DEL PEAK 22(14Q11.2) MUTATED" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-DC-6157                     TCGA-DC-6158 
  "DEL PEAK 22(14Q11.2) MUTATED"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-DC-6160                     TCGA-DC-6681 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
  "DEL PEAK 22(14Q11.2) MUTATED"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
  "DEL PEAK 22(14Q11.2) MUTATED"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
  "DEL PEAK 22(14Q11.2) MUTATED" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-EF-5830                     TCGA-EF-5831 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-EI-6506                     TCGA-EI-6507 
  "DEL PEAK 22(14Q11.2) MUTATED" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
  "DEL PEAK 22(14Q11.2) MUTATED"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-EI-6512                     TCGA-EI-6513 
"DEL PEAK 22(14Q11.2) WILD-TYPE"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-EI-6514                     TCGA-EI-6881 
  "DEL PEAK 22(14Q11.2) MUTATED"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-EI-6884                     TCGA-EI-6885 
  "DEL PEAK 22(14Q11.2) MUTATED" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"DEL PEAK 22(14Q11.2) WILD-TYPE"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-EI-7004                     TCGA-F5-6465 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-F5-6571                     TCGA-F5-6702 
  "DEL PEAK 22(14Q11.2) MUTATED" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-F5-6810                     TCGA-F5-6811 
  "DEL PEAK 22(14Q11.2) MUTATED"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-F5-6812                     TCGA-F5-6813 
  "DEL PEAK 22(14Q11.2) MUTATED" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
  "DEL PEAK 22(14Q11.2) MUTATED" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-G5-6233                     TCGA-G5-6235 
  "DEL PEAK 22(14Q11.2) MUTATED"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"DEL PEAK 22(14Q11.2) WILD-TYPE"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK 22(14Q11.2) WILD-TYPE"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
  "DEL PEAK 22(14Q11.2) MUTATED"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-AF-3400                     TCGA-AF-3911 
  "DEL PEAK 22(14Q11.2) MUTATED"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 22(14Q11.2) WILD-TYPE"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-AG-3575                     TCGA-AG-3581 
"DEL PEAK 22(14Q11.2) WILD-TYPE"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-AG-3582                     TCGA-AG-3583 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
"DEL PEAK 22(14Q11.2) WILD-TYPE"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"DEL PEAK 22(14Q11.2) WILD-TYPE"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"DEL PEAK 22(14Q11.2) WILD-TYPE"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
  "DEL PEAK 22(14Q11.2) MUTATED" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
  "DEL PEAK 22(14Q11.2) MUTATED"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-AG-4001                     TCGA-AG-4007 
  "DEL PEAK 22(14Q11.2) MUTATED" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-4008                     TCGA-AG-4022 
  "DEL PEAK 22(14Q11.2) MUTATED" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
  "DEL PEAK 22(14Q11.2) MUTATED"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
  "DEL PEAK 22(14Q11.2) MUTATED" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"DEL PEAK 22(14Q11.2) WILD-TYPE"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
  "DEL PEAK 22(14Q11.2) MUTATED" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
"DEL PEAK 22(14Q11.2) WILD-TYPE"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-AH-6544                     TCGA-AH-6547 
  "DEL PEAK 22(14Q11.2) MUTATED" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AH-6897                     TCGA-AH-6903 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
  "DEL PEAK 22(14Q11.2) MUTATED"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-CI-6620                     TCGA-CI-6622 
  "DEL PEAK 22(14Q11.2) MUTATED" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
  "DEL PEAK 22(14Q11.2) MUTATED"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-CL-4957                     TCGA-CL-5917 
  "DEL PEAK 22(14Q11.2) MUTATED" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-CL-5918                     TCGA-DC-4745 
  "DEL PEAK 22(14Q11.2) MUTATED" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-DC-4749                     TCGA-DC-5337 
  "DEL PEAK 22(14Q11.2) MUTATED" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
  "DEL PEAK 22(14Q11.2) MUTATED" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-DC-6155                     TCGA-DC-6156 
  "DEL PEAK 22(14Q11.2) MUTATED" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-DC-6157                     TCGA-DC-6158 
  "DEL PEAK 22(14Q11.2) MUTATED"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-DC-6160                     TCGA-DC-6681 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
  "DEL PEAK 22(14Q11.2) MUTATED"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
  "DEL PEAK 22(14Q11.2) MUTATED"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
  "DEL PEAK 22(14Q11.2) MUTATED" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-EF-5830                     TCGA-EF-5831 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-EI-6506                     TCGA-EI-6507 
  "DEL PEAK 22(14Q11.2) MUTATED" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
  "DEL PEAK 22(14Q11.2) MUTATED"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-EI-6512                     TCGA-EI-6513 
"DEL PEAK 22(14Q11.2) WILD-TYPE"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-EI-6514                     TCGA-EI-6881 
  "DEL PEAK 22(14Q11.2) MUTATED"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-EI-6884                     TCGA-EI-6885 
  "DEL PEAK 22(14Q11.2) MUTATED" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"DEL PEAK 22(14Q11.2) WILD-TYPE"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-EI-7004                     TCGA-F5-6465 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-F5-6571                     TCGA-F5-6702 
  "DEL PEAK 22(14Q11.2) MUTATED" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-F5-6810                     TCGA-F5-6811 
  "DEL PEAK 22(14Q11.2) MUTATED"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-F5-6812                     TCGA-F5-6813 
  "DEL PEAK 22(14Q11.2) MUTATED" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
  "DEL PEAK 22(14Q11.2) MUTATED" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-G5-6233                     TCGA-G5-6235 
  "DEL PEAK 22(14Q11.2) MUTATED"   "DEL PEAK 22(14Q11.2) MUTATED" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"DEL PEAK 22(14Q11.2) WILD-TYPE"   "DEL PEAK 22(14Q11.2) MUTATED" 
[1] "hr=" "1.7"
D47V2, continuous
                                vv
clus                             STAGE I STAGE II STAGE IIA STAGE IIB STAGE IIC
  DEL PEAK 22(14Q11.2) MUTATED        12        2        20         0         1
  DEL PEAK 22(14Q11.2) WILD-TYPE      18        6        18         2         1
                                vv
clus                             STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  DEL PEAK 22(14Q11.2) MUTATED           1          5         12          6
  DEL PEAK 22(14Q11.2) WILD-TYPE         4          4         11          8
                                vv
clus                             STAGE IV STAGE IVA
  DEL PEAK 22(14Q11.2) MUTATED          6         2
  DEL PEAK 22(14Q11.2) WILD-TYPE       11         7
D47V3, multiclass
                                vv
clus                             T1 T2 T3 T4
  DEL PEAK 22(14Q11.2) MUTATED    3 12 49  4
  DEL PEAK 22(14Q11.2) WILD-TYPE  6 17 60 10
D47V4, multiclass
    clus
vv   DEL PEAK 22(14Q11.2) MUTATED DEL PEAK 22(14Q11.2) WILD-TYPE
  T1                            3                              6
  T2                           12                             17
  T3                           49                             60
  T4                            4                             10
                                vv
clus                             N0 N1 N2
  DEL PEAK 22(14Q11.2) MUTATED   34 23 11
  DEL PEAK 22(14Q11.2) WILD-TYPE 49 22 21
D47V5, multiclass
    clus
vv   DEL PEAK 22(14Q11.2) MUTATED DEL PEAK 22(14Q11.2) WILD-TYPE
  N0                           34                             49
  N1                           23                             22
  N2                           11                             21
                                vv
clus                             M0 M1 M1A MX
  DEL PEAK 22(14Q11.2) MUTATED   53  8   0  6
  DEL PEAK 22(14Q11.2) WILD-TYPE 70 14   2  7
D47V6, multiclass
     clus
vv    DEL PEAK 22(14Q11.2) MUTATED DEL PEAK 22(14Q11.2) WILD-TYPE
  M0                            53                             70
  M1                             8                             14
  M1A                            0                              2
  MX                             6                              7
D47V7, binary
                                cls
clus                              0  1
  DEL PEAK 22(14Q11.2) MUTATED   29 39
  DEL PEAK 22(14Q11.2) WILD-TYPE 45 49
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 22(14Q11.2) MUTATED     29   39
  DEL PEAK 22(14Q11.2) WILD-TYPE   45   49
        clus
vv       DEL PEAK 22(14Q11.2) MUTATED DEL PEAK 22(14Q11.2) WILD-TYPE
  FEMALE                           29                             45
  MALE                             39                             49
D47V8, binary
                                cls
clus                              0  1
  DEL PEAK 22(14Q11.2) MUTATED   64  2
  DEL PEAK 22(14Q11.2) WILD-TYPE 79 11
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 22(14Q11.2) MUTATED     64    2
  DEL PEAK 22(14Q11.2) WILD-TYPE   79   11
                                clus
vv                               DEL PEAK 22(14Q11.2) MUTATED
  RECTAL ADENOCARCINOMA                                    64
  RECTAL MUCINOUS ADENOCARCINOMA                            2
                                clus
vv                               DEL PEAK 22(14Q11.2) WILD-TYPE
  RECTAL ADENOCARCINOMA                                      79
  RECTAL MUCINOUS ADENOCARCINOMA                             11
D47V9, binary
                                cls
clus                              0  1
  DEL PEAK 22(14Q11.2) MUTATED    4 64
  DEL PEAK 22(14Q11.2) WILD-TYPE  2 92
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 22(14Q11.2) MUTATED      4   64
  DEL PEAK 22(14Q11.2) WILD-TYPE    2   92
     clus
vv    DEL PEAK 22(14Q11.2) MUTATED DEL PEAK 22(14Q11.2) WILD-TYPE
  NO                             4                              2
  YES                           64                             92
                                vv
clus                             R0 R1 R2 RX
  DEL PEAK 22(14Q11.2) MUTATED   50  2  2  1
  DEL PEAK 22(14Q11.2) WILD-TYPE 71  0 10  2
D47V10, multiclass
    clus
vv   DEL PEAK 22(14Q11.2) MUTATED DEL PEAK 22(14Q11.2) WILD-TYPE
  R0                           50                             71
  R1                            2                              0
  R2                            2                             10
  RX                            1                              2
D47V11, continuous

Clustering(48) Variable = DEL PEAK 23(14Q31.1) MUTATION ANALYSIS
D48V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 23(14Q31.1) MUTATED   50  7
  DEL PEAK 23(14Q31.1) WILD-TYPE 67  6
  DEL PEAK 23(14Q31.1) MUTATED DEL PEAK 23(14Q31.1) WILD-TYPE 
                            57                             73 
  DEL PEAK 23(14Q31.1) MUTATED DEL PEAK 23(14Q31.1) WILD-TYPE 
                             7                              6 
$`DEL PEAK 23(14Q31.1) MUTATED`
TCGA-AF-2689 TCGA-AF-2690 TCGA-AF-2692 TCGA-AF-3911 TCGA-AG-3582 TCGA-AG-3587 
       17.95        17.23        13.55        25.02         1.02         1.02 
TCGA-AG-3599 TCGA-AG-3727 TCGA-AG-3731 TCGA-AG-3742 TCGA-AG-3883 TCGA-AG-3893 
        0.99         0.95         1.02         0.99         1.02         0.99 
TCGA-AG-3896 TCGA-AG-4001 TCGA-AG-4008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y 
        1.02         1.02         1.02         6.02        25.94        23.01 
TCGA-AG-A01W TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A032 TCGA-AH-6544 TCGA-BM-6198 
       70.03         1.94        38.93        38.01         0.49        10.19 
TCGA-CI-6619 TCGA-CI-6620 TCGA-CI-6623 TCGA-CI-6624 TCGA-CL-4957 TCGA-CL-5918 
        6.02         6.02         9.37         4.70        13.97         7.99 
TCGA-DC-4745 TCGA-DC-4749 TCGA-DC-5869 TCGA-DC-6155 TCGA-DC-6157 TCGA-DC-6158 
       10.98        11.01        12.99        14.01        36.00         6.97 
TCGA-DC-6682 TCGA-DC-6683 TCGA-DY-A1DC TCGA-DY-A1DE TCGA-DY-A1DG TCGA-EI-6506 
       13.02        10.06        41.33       129.27        51.48        20.55 
TCGA-EI-6509 TCGA-EI-6513 TCGA-EI-6514 TCGA-EI-6881 TCGA-EI-6883 TCGA-EI-6884 
       17.00        16.34        16.31        16.37        11.51        10.78 
TCGA-EI-7002 TCGA-F5-6571 TCGA-F5-6810 TCGA-F5-6811 TCGA-F5-6812 TCGA-F5-6863 
       11.97         0.85         0.39         1.02         0.66         0.76 
TCGA-G5-6233 TCGA-G5-6235 TCGA-G5-6641 
       18.25        55.76        26.43 

$`DEL PEAK 23(14Q31.1) WILD-TYPE`
TCGA-AF-2687 TCGA-AF-2691 TCGA-AF-2693 TCGA-AF-3400 TCGA-AF-3913 TCGA-AF-4110 
       24.13        10.62        19.10        12.72        10.39        14.50 
TCGA-AF-5654 TCGA-AF-6136 TCGA-AF-6655 TCGA-AF-6672 TCGA-AG-3575 TCGA-AG-3581 
        8.45        15.35        11.67        10.39        12.00         1.02 
TCGA-AG-3583 TCGA-AG-3586 TCGA-AG-3605 TCGA-AG-3726 TCGA-AG-3878 TCGA-AG-3887 
        2.01         1.02         0.99         7.96         0.99         0.92 
TCGA-AG-3892 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4007 TCGA-AG-4022 TCGA-AG-A002 
        1.02         0.99         1.02         1.02         0.99        20.94 
TCGA-AG-A008 TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01J 
       13.91        17.03        15.91        13.02         1.02         1.02 
TCGA-AG-A01L TCGA-AG-A01N TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A023 TCGA-AG-A025 
       12.00        12.00        63.98        10.98        51.98        49.94 
TCGA-AG-A02N TCGA-AG-A02X TCGA-AH-6547 TCGA-AH-6643 TCGA-AH-6644 TCGA-AH-6897 
       61.94        40.96         1.45         0.69         0.72         4.60 
TCGA-AH-6903 TCGA-CI-6622 TCGA-CL-5917 TCGA-DC-5337 TCGA-DC-6154 TCGA-DC-6156 
        1.81         6.94        60.00        15.02        12.00        15.02 
TCGA-DC-6160 TCGA-DC-6681 TCGA-DT-5265 TCGA-DY-A0XA TCGA-DY-A1DD TCGA-DY-A1DF 
       30.05        12.95         5.29       126.41        57.24        24.13 
TCGA-DY-A1H8 TCGA-EF-5830 TCGA-EF-5831 TCGA-EI-6507 TCGA-EI-6508 TCGA-EI-6510 
       32.58         0.49         2.40        19.96        20.91        18.28 
TCGA-EI-6511 TCGA-EI-6512 TCGA-EI-6882 TCGA-EI-6885 TCGA-EI-6917 TCGA-EI-7004 
       15.85        17.69         8.61        13.61        17.46         8.45 
TCGA-F5-6465 TCGA-F5-6702 TCGA-F5-6813 TCGA-F5-6814 TCGA-F5-6861 TCGA-F5-6864 
        3.39         2.17         0.69         0.53         1.08         0.46 
TCGA-G5-6572 
       47.08 

  DEL PEAK 23(14Q31.1) MUTATED DEL PEAK 23(14Q31.1) WILD-TYPE 
                          0.39                           0.46 
  DEL PEAK 23(14Q31.1) MUTATED DEL PEAK 23(14Q31.1) WILD-TYPE 
                        129.27                         126.41 
  DEL PEAK 23(14Q31.1) MUTATED DEL PEAK 23(14Q31.1) WILD-TYPE 
                         10.98                          11.67 
[1] "0.4 - 129.3 (11.0)" "0.5 - 126.4 (11.7)"
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK 23(14Q31.1) WILD-TYPE"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-AF-2690                     TCGA-AF-2691 
  "DEL PEAK 23(14Q31.1) MUTATED" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
  "DEL PEAK 23(14Q31.1) MUTATED" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK 23(14Q31.1) WILD-TYPE"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-3575                     TCGA-AG-3581 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-3582                     TCGA-AG-3583 
  "DEL PEAK 23(14Q31.1) MUTATED" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"DEL PEAK 23(14Q31.1) WILD-TYPE"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-AG-3599                     TCGA-AG-3605 
  "DEL PEAK 23(14Q31.1) MUTATED" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
"DEL PEAK 23(14Q31.1) WILD-TYPE"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-AG-3731                     TCGA-AG-3742 
  "DEL PEAK 23(14Q31.1) MUTATED"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"DEL PEAK 23(14Q31.1) WILD-TYPE"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
  "DEL PEAK 23(14Q31.1) MUTATED" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
  "DEL PEAK 23(14Q31.1) MUTATED" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-4001                     TCGA-AG-4007 
  "DEL PEAK 23(14Q31.1) MUTATED" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-4008                     TCGA-AG-4022 
  "DEL PEAK 23(14Q31.1) MUTATED" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
  "DEL PEAK 23(14Q31.1) MUTATED"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
  "DEL PEAK 23(14Q31.1) MUTATED" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
  "DEL PEAK 23(14Q31.1) MUTATED" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"DEL PEAK 23(14Q31.1) WILD-TYPE"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
  "DEL PEAK 23(14Q31.1) MUTATED" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
"DEL PEAK 23(14Q31.1) WILD-TYPE"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-AH-6544                     TCGA-AH-6547 
  "DEL PEAK 23(14Q31.1) MUTATED" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AH-6897                     TCGA-AH-6903 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
  "DEL PEAK 23(14Q31.1) MUTATED"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-CI-6620                     TCGA-CI-6622 
  "DEL PEAK 23(14Q31.1) MUTATED" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
  "DEL PEAK 23(14Q31.1) MUTATED"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-CL-4957                     TCGA-CL-5917 
  "DEL PEAK 23(14Q31.1) MUTATED" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-CL-5918                     TCGA-DC-4745 
  "DEL PEAK 23(14Q31.1) MUTATED"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-DC-4749                     TCGA-DC-5337 
  "DEL PEAK 23(14Q31.1) MUTATED" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
  "DEL PEAK 23(14Q31.1) MUTATED" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-DC-6155                     TCGA-DC-6156 
  "DEL PEAK 23(14Q31.1) MUTATED" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-DC-6157                     TCGA-DC-6158 
  "DEL PEAK 23(14Q31.1) MUTATED"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-DC-6160                     TCGA-DC-6681 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
  "DEL PEAK 23(14Q31.1) MUTATED"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
  "DEL PEAK 23(14Q31.1) MUTATED" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
  "DEL PEAK 23(14Q31.1) MUTATED" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
  "DEL PEAK 23(14Q31.1) MUTATED" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-EF-5830                     TCGA-EF-5831 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-EI-6506                     TCGA-EI-6507 
  "DEL PEAK 23(14Q31.1) MUTATED" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"DEL PEAK 23(14Q31.1) WILD-TYPE"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-EI-6512                     TCGA-EI-6513 
"DEL PEAK 23(14Q31.1) WILD-TYPE"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-EI-6514                     TCGA-EI-6881 
  "DEL PEAK 23(14Q31.1) MUTATED"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"DEL PEAK 23(14Q31.1) WILD-TYPE"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-EI-6884                     TCGA-EI-6885 
  "DEL PEAK 23(14Q31.1) MUTATED" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"DEL PEAK 23(14Q31.1) WILD-TYPE"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-EI-7004                     TCGA-F5-6465 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-F5-6571                     TCGA-F5-6702 
  "DEL PEAK 23(14Q31.1) MUTATED" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-F5-6810                     TCGA-F5-6811 
  "DEL PEAK 23(14Q31.1) MUTATED"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-F5-6812                     TCGA-F5-6813 
  "DEL PEAK 23(14Q31.1) MUTATED" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
  "DEL PEAK 23(14Q31.1) MUTATED" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-G5-6233                     TCGA-G5-6235 
  "DEL PEAK 23(14Q31.1) MUTATED"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"DEL PEAK 23(14Q31.1) WILD-TYPE"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK 23(14Q31.1) WILD-TYPE"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-AF-2690                     TCGA-AF-2691 
  "DEL PEAK 23(14Q31.1) MUTATED" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
  "DEL PEAK 23(14Q31.1) MUTATED" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK 23(14Q31.1) WILD-TYPE"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-3575                     TCGA-AG-3581 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-3582                     TCGA-AG-3583 
  "DEL PEAK 23(14Q31.1) MUTATED" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"DEL PEAK 23(14Q31.1) WILD-TYPE"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-AG-3599                     TCGA-AG-3605 
  "DEL PEAK 23(14Q31.1) MUTATED" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
"DEL PEAK 23(14Q31.1) WILD-TYPE"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-AG-3731                     TCGA-AG-3742 
  "DEL PEAK 23(14Q31.1) MUTATED"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"DEL PEAK 23(14Q31.1) WILD-TYPE"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
  "DEL PEAK 23(14Q31.1) MUTATED" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
  "DEL PEAK 23(14Q31.1) MUTATED" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-4001                     TCGA-AG-4007 
  "DEL PEAK 23(14Q31.1) MUTATED" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-4008                     TCGA-AG-4022 
  "DEL PEAK 23(14Q31.1) MUTATED" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
  "DEL PEAK 23(14Q31.1) MUTATED"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
  "DEL PEAK 23(14Q31.1) MUTATED" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
  "DEL PEAK 23(14Q31.1) MUTATED" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"DEL PEAK 23(14Q31.1) WILD-TYPE"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
  "DEL PEAK 23(14Q31.1) MUTATED" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
"DEL PEAK 23(14Q31.1) WILD-TYPE"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-AH-6544                     TCGA-AH-6547 
  "DEL PEAK 23(14Q31.1) MUTATED" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AH-6897                     TCGA-AH-6903 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
  "DEL PEAK 23(14Q31.1) MUTATED"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-CI-6620                     TCGA-CI-6622 
  "DEL PEAK 23(14Q31.1) MUTATED" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
  "DEL PEAK 23(14Q31.1) MUTATED"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-CL-4957                     TCGA-CL-5917 
  "DEL PEAK 23(14Q31.1) MUTATED" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-CL-5918                     TCGA-DC-4745 
  "DEL PEAK 23(14Q31.1) MUTATED"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-DC-4749                     TCGA-DC-5337 
  "DEL PEAK 23(14Q31.1) MUTATED" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
  "DEL PEAK 23(14Q31.1) MUTATED" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-DC-6155                     TCGA-DC-6156 
  "DEL PEAK 23(14Q31.1) MUTATED" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-DC-6157                     TCGA-DC-6158 
  "DEL PEAK 23(14Q31.1) MUTATED"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-DC-6160                     TCGA-DC-6681 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
  "DEL PEAK 23(14Q31.1) MUTATED"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
  "DEL PEAK 23(14Q31.1) MUTATED" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
  "DEL PEAK 23(14Q31.1) MUTATED" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
  "DEL PEAK 23(14Q31.1) MUTATED" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-EF-5830                     TCGA-EF-5831 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-EI-6506                     TCGA-EI-6507 
  "DEL PEAK 23(14Q31.1) MUTATED" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"DEL PEAK 23(14Q31.1) WILD-TYPE"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-EI-6512                     TCGA-EI-6513 
"DEL PEAK 23(14Q31.1) WILD-TYPE"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-EI-6514                     TCGA-EI-6881 
  "DEL PEAK 23(14Q31.1) MUTATED"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"DEL PEAK 23(14Q31.1) WILD-TYPE"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-EI-6884                     TCGA-EI-6885 
  "DEL PEAK 23(14Q31.1) MUTATED" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"DEL PEAK 23(14Q31.1) WILD-TYPE"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-EI-7004                     TCGA-F5-6465 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-F5-6571                     TCGA-F5-6702 
  "DEL PEAK 23(14Q31.1) MUTATED" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-F5-6810                     TCGA-F5-6811 
  "DEL PEAK 23(14Q31.1) MUTATED"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-F5-6812                     TCGA-F5-6813 
  "DEL PEAK 23(14Q31.1) MUTATED" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
  "DEL PEAK 23(14Q31.1) MUTATED" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-G5-6233                     TCGA-G5-6235 
  "DEL PEAK 23(14Q31.1) MUTATED"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"DEL PEAK 23(14Q31.1) WILD-TYPE"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK 23(14Q31.1) WILD-TYPE"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-AF-2690                     TCGA-AF-2691 
  "DEL PEAK 23(14Q31.1) MUTATED" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
  "DEL PEAK 23(14Q31.1) MUTATED" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK 23(14Q31.1) WILD-TYPE"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-3575                     TCGA-AG-3581 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-3582                     TCGA-AG-3583 
  "DEL PEAK 23(14Q31.1) MUTATED" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"DEL PEAK 23(14Q31.1) WILD-TYPE"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-AG-3599                     TCGA-AG-3605 
  "DEL PEAK 23(14Q31.1) MUTATED" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
"DEL PEAK 23(14Q31.1) WILD-TYPE"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-AG-3731                     TCGA-AG-3742 
  "DEL PEAK 23(14Q31.1) MUTATED"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"DEL PEAK 23(14Q31.1) WILD-TYPE"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
  "DEL PEAK 23(14Q31.1) MUTATED" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
  "DEL PEAK 23(14Q31.1) MUTATED" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-4001                     TCGA-AG-4007 
  "DEL PEAK 23(14Q31.1) MUTATED" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-4008                     TCGA-AG-4022 
  "DEL PEAK 23(14Q31.1) MUTATED" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
  "DEL PEAK 23(14Q31.1) MUTATED"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
  "DEL PEAK 23(14Q31.1) MUTATED" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
  "DEL PEAK 23(14Q31.1) MUTATED" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"DEL PEAK 23(14Q31.1) WILD-TYPE"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
  "DEL PEAK 23(14Q31.1) MUTATED" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
"DEL PEAK 23(14Q31.1) WILD-TYPE"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-AH-6544                     TCGA-AH-6547 
  "DEL PEAK 23(14Q31.1) MUTATED" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AH-6897                     TCGA-AH-6903 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
  "DEL PEAK 23(14Q31.1) MUTATED"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-CI-6620                     TCGA-CI-6622 
  "DEL PEAK 23(14Q31.1) MUTATED" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
  "DEL PEAK 23(14Q31.1) MUTATED"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-CL-4957                     TCGA-CL-5917 
  "DEL PEAK 23(14Q31.1) MUTATED" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-CL-5918                     TCGA-DC-4745 
  "DEL PEAK 23(14Q31.1) MUTATED"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-DC-4749                     TCGA-DC-5337 
  "DEL PEAK 23(14Q31.1) MUTATED" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
  "DEL PEAK 23(14Q31.1) MUTATED" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-DC-6155                     TCGA-DC-6156 
  "DEL PEAK 23(14Q31.1) MUTATED" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-DC-6157                     TCGA-DC-6158 
  "DEL PEAK 23(14Q31.1) MUTATED"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-DC-6160                     TCGA-DC-6681 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
  "DEL PEAK 23(14Q31.1) MUTATED"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
  "DEL PEAK 23(14Q31.1) MUTATED" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
  "DEL PEAK 23(14Q31.1) MUTATED" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
  "DEL PEAK 23(14Q31.1) MUTATED" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-EF-5830                     TCGA-EF-5831 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-EI-6506                     TCGA-EI-6507 
  "DEL PEAK 23(14Q31.1) MUTATED" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"DEL PEAK 23(14Q31.1) WILD-TYPE"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-EI-6512                     TCGA-EI-6513 
"DEL PEAK 23(14Q31.1) WILD-TYPE"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-EI-6514                     TCGA-EI-6881 
  "DEL PEAK 23(14Q31.1) MUTATED"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"DEL PEAK 23(14Q31.1) WILD-TYPE"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-EI-6884                     TCGA-EI-6885 
  "DEL PEAK 23(14Q31.1) MUTATED" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"DEL PEAK 23(14Q31.1) WILD-TYPE"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-EI-7004                     TCGA-F5-6465 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-F5-6571                     TCGA-F5-6702 
  "DEL PEAK 23(14Q31.1) MUTATED" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-F5-6810                     TCGA-F5-6811 
  "DEL PEAK 23(14Q31.1) MUTATED"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-F5-6812                     TCGA-F5-6813 
  "DEL PEAK 23(14Q31.1) MUTATED" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
  "DEL PEAK 23(14Q31.1) MUTATED" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-G5-6233                     TCGA-G5-6235 
  "DEL PEAK 23(14Q31.1) MUTATED"   "DEL PEAK 23(14Q31.1) MUTATED" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"DEL PEAK 23(14Q31.1) WILD-TYPE"   "DEL PEAK 23(14Q31.1) MUTATED" 
[1] "hr=" "1.8"
D48V2, continuous
                                vv
clus                             STAGE I STAGE II STAGE IIA STAGE IIB STAGE IIC
  DEL PEAK 23(14Q31.1) MUTATED        11        2        22         0         2
  DEL PEAK 23(14Q31.1) WILD-TYPE      19        6        16         2         0
                                vv
clus                             STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  DEL PEAK 23(14Q31.1) MUTATED           1          5         12          5
  DEL PEAK 23(14Q31.1) WILD-TYPE         4          4         11          9
                                vv
clus                             STAGE IV STAGE IVA
  DEL PEAK 23(14Q31.1) MUTATED          7         2
  DEL PEAK 23(14Q31.1) WILD-TYPE       10         7
D48V3, multiclass
                                vv
clus                             T1 T2 T3 T4
  DEL PEAK 23(14Q31.1) MUTATED    3 11 53  3
  DEL PEAK 23(14Q31.1) WILD-TYPE  6 18 56 11
D48V4, multiclass
    clus
vv   DEL PEAK 23(14Q31.1) MUTATED DEL PEAK 23(14Q31.1) WILD-TYPE
  T1                            3                              6
  T2                           11                             18
  T3                           53                             56
  T4                            3                             11
                                vv
clus                             N0 N1 N2
  DEL PEAK 23(14Q31.1) MUTATED   36 25  9
  DEL PEAK 23(14Q31.1) WILD-TYPE 47 20 23
D48V5, multiclass
    clus
vv   DEL PEAK 23(14Q31.1) MUTATED DEL PEAK 23(14Q31.1) WILD-TYPE
  N0                           36                             47
  N1                           25                             20
  N2                            9                             23
                                vv
clus                             M0 M1 M1A MX
  DEL PEAK 23(14Q31.1) MUTATED   55 10   0  4
  DEL PEAK 23(14Q31.1) WILD-TYPE 68 12   2  9
D48V6, multiclass
     clus
vv    DEL PEAK 23(14Q31.1) MUTATED DEL PEAK 23(14Q31.1) WILD-TYPE
  M0                            55                             68
  M1                            10                             12
  M1A                            0                              2
  MX                             4                              9
D48V7, binary
                                cls
clus                              0  1
  DEL PEAK 23(14Q31.1) MUTATED   29 41
  DEL PEAK 23(14Q31.1) WILD-TYPE 45 47
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 23(14Q31.1) MUTATED     29   41
  DEL PEAK 23(14Q31.1) WILD-TYPE   45   47
        clus
vv       DEL PEAK 23(14Q31.1) MUTATED DEL PEAK 23(14Q31.1) WILD-TYPE
  FEMALE                           29                             45
  MALE                             41                             47
D48V8, binary
                                cls
clus                              0  1
  DEL PEAK 23(14Q31.1) MUTATED   66  1
  DEL PEAK 23(14Q31.1) WILD-TYPE 77 12
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 23(14Q31.1) MUTATED     66    1
  DEL PEAK 23(14Q31.1) WILD-TYPE   77   12
                                clus
vv                               DEL PEAK 23(14Q31.1) MUTATED
  RECTAL ADENOCARCINOMA                                    66
  RECTAL MUCINOUS ADENOCARCINOMA                            1
                                clus
vv                               DEL PEAK 23(14Q31.1) WILD-TYPE
  RECTAL ADENOCARCINOMA                                      77
  RECTAL MUCINOUS ADENOCARCINOMA                             12
D48V9, binary
                                cls
clus                              0  1
  DEL PEAK 23(14Q31.1) MUTATED    2 68
  DEL PEAK 23(14Q31.1) WILD-TYPE  4 88
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 23(14Q31.1) MUTATED      2   68
  DEL PEAK 23(14Q31.1) WILD-TYPE    4   88
     clus
vv    DEL PEAK 23(14Q31.1) MUTATED DEL PEAK 23(14Q31.1) WILD-TYPE
  NO                             2                              4
  YES                           68                             88
                                vv
clus                             R0 R1 R2 RX
  DEL PEAK 23(14Q31.1) MUTATED   51  2  4  1
  DEL PEAK 23(14Q31.1) WILD-TYPE 70  0  8  2
D48V10, multiclass
    clus
vv   DEL PEAK 23(14Q31.1) MUTATED DEL PEAK 23(14Q31.1) WILD-TYPE
  R0                           51                             70
  R1                            2                              0
  R2                            4                              8
  RX                            1                              2
D48V11, continuous

Clustering(49) Variable = DEL PEAK 24(15Q22.33) MUTATION ANALYSIS
D49V1, survival
                                 sevent
clus2                              0  1
  DEL PEAK 24(15Q22.33) MUTATED   52  6
  DEL PEAK 24(15Q22.33) WILD-TYPE 65  7
  DEL PEAK 24(15Q22.33) MUTATED DEL PEAK 24(15Q22.33) WILD-TYPE 
                             58                              72 
  DEL PEAK 24(15Q22.33) MUTATED DEL PEAK 24(15Q22.33) WILD-TYPE 
                              6                               7 
$`DEL PEAK 24(15Q22.33) MUTATED`
TCGA-AF-2687 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3911 TCGA-AF-4110 
       24.13        10.62        13.55        12.72        25.02        14.50 
TCGA-AF-6672 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3742 TCGA-AG-3893 TCGA-AG-3896 
       10.39         1.02         2.01         0.99         0.99         1.02 
TCGA-AG-3999 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 
        1.02         1.02        13.91        25.94        23.01        17.03 
TCGA-AG-A01J TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A02G TCGA-AG-A02X TCGA-AG-A032 
        1.02        12.00        70.03        38.93        40.96        38.01 
TCGA-AH-6544 TCGA-AH-6643 TCGA-BM-6198 TCGA-CI-6619 TCGA-CI-6623 TCGA-CL-5918 
        0.49         0.69        10.19         6.02         9.37         7.99 
TCGA-DC-4745 TCGA-DC-5869 TCGA-DC-6155 TCGA-DC-6157 TCGA-DC-6682 TCGA-DC-6683 
       10.98        12.99        14.01        36.00        13.02        10.06 
TCGA-DY-A1DC TCGA-DY-A1DD TCGA-DY-A1DE TCGA-DY-A1DF TCGA-DY-A1DG TCGA-EF-5830 
       41.33        57.24       129.27        24.13        51.48         0.49 
TCGA-EF-5831 TCGA-EI-6511 TCGA-EI-6514 TCGA-EI-6881 TCGA-EI-6883 TCGA-EI-6884 
        2.40        15.85        16.31        16.37        11.51        10.78 
TCGA-EI-6885 TCGA-EI-7002 TCGA-F5-6571 TCGA-F5-6702 TCGA-F5-6811 TCGA-F5-6812 
       13.61        11.97         0.85         2.17         1.02         0.66 
TCGA-F5-6813 TCGA-F5-6864 TCGA-G5-6233 TCGA-G5-6641 
        0.69         0.46        18.25        26.43 

$`DEL PEAK 24(15Q22.33) WILD-TYPE`
TCGA-AF-2689 TCGA-AF-2690 TCGA-AF-2693 TCGA-AF-3913 TCGA-AF-5654 TCGA-AF-6136 
       17.95        17.23        19.10        10.39         8.45        15.35 
TCGA-AF-6655 TCGA-AG-3575 TCGA-AG-3581 TCGA-AG-3586 TCGA-AG-3587 TCGA-AG-3599 
       11.67        12.00         1.02         1.02         1.02         0.99 
TCGA-AG-3605 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3731 TCGA-AG-3878 TCGA-AG-3883 
        0.99         7.96         0.95         1.02         0.99         1.02 
TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3894 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4022 
        0.92         1.02         0.99         1.02         1.02         0.99 
TCGA-AG-A002 TCGA-AG-A00C TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01N 
       20.94         6.02        15.91        13.02         1.02        12.00 
TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A023 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02N 
       63.98        10.98        51.98        49.94         1.94        61.94 
TCGA-AH-6547 TCGA-AH-6644 TCGA-AH-6897 TCGA-AH-6903 TCGA-CI-6620 TCGA-CI-6622 
        1.45         0.72         4.60         1.81         6.02         6.94 
TCGA-CI-6624 TCGA-CL-4957 TCGA-CL-5917 TCGA-DC-4749 TCGA-DC-5337 TCGA-DC-6154 
        4.70        13.97        60.00        11.01        15.02        12.00 
TCGA-DC-6156 TCGA-DC-6158 TCGA-DC-6160 TCGA-DC-6681 TCGA-DT-5265 TCGA-DY-A0XA 
       15.02         6.97        30.05        12.95         5.29       126.41 
TCGA-DY-A1H8 TCGA-EI-6506 TCGA-EI-6507 TCGA-EI-6508 TCGA-EI-6509 TCGA-EI-6510 
       32.58        20.55        19.96        20.91        17.00        18.28 
TCGA-EI-6512 TCGA-EI-6513 TCGA-EI-6882 TCGA-EI-6917 TCGA-EI-7004 TCGA-F5-6465 
       17.69        16.34         8.61        17.46         8.45         3.39 
TCGA-F5-6810 TCGA-F5-6814 TCGA-F5-6861 TCGA-F5-6863 TCGA-G5-6235 TCGA-G5-6572 
        0.39         0.53         1.08         0.76        55.76        47.08 

  DEL PEAK 24(15Q22.33) MUTATED DEL PEAK 24(15Q22.33) WILD-TYPE 
                           0.46                            0.39 
  DEL PEAK 24(15Q22.33) MUTATED DEL PEAK 24(15Q22.33) WILD-TYPE 
                         129.27                          126.41 
  DEL PEAK 24(15Q22.33) MUTATED DEL PEAK 24(15Q22.33) WILD-TYPE 
                         11.985                           9.500 
[1] "0.5 - 129.3 (12.0)" "0.4 - 126.4 (9.5)" 
                     TCGA-AF-2687                      TCGA-AF-2689 
  "DEL PEAK 24(15Q22.33) MUTATED" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AF-2690                      TCGA-AF-2691 
"DEL PEAK 24(15Q22.33) WILD-TYPE"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-AF-2692                      TCGA-AF-2693 
  "DEL PEAK 24(15Q22.33) MUTATED" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AF-3400                      TCGA-AF-3911 
  "DEL PEAK 24(15Q22.33) MUTATED"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-AF-3913                      TCGA-AF-4110 
"DEL PEAK 24(15Q22.33) WILD-TYPE"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-AF-5654                      TCGA-AF-6136 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AF-6655                      TCGA-AF-6672 
"DEL PEAK 24(15Q22.33) WILD-TYPE"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-AG-3575                      TCGA-AG-3581 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-3582                      TCGA-AG-3583 
  "DEL PEAK 24(15Q22.33) MUTATED"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-AG-3586                      TCGA-AG-3587 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-3599                      TCGA-AG-3605 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-3726                      TCGA-AG-3727 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-3731                      TCGA-AG-3742 
"DEL PEAK 24(15Q22.33) WILD-TYPE"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-AG-3878                      TCGA-AG-3883 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-3887                      TCGA-AG-3892 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-3893                      TCGA-AG-3894 
  "DEL PEAK 24(15Q22.33) MUTATED" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-3896                      TCGA-AG-3999 
  "DEL PEAK 24(15Q22.33) MUTATED"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-AG-4001                      TCGA-AG-4007 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-4008                      TCGA-AG-4022 
  "DEL PEAK 24(15Q22.33) MUTATED" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-A002                      TCGA-AG-A008 
"DEL PEAK 24(15Q22.33) WILD-TYPE"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-AG-A00C                      TCGA-AG-A00H 
"DEL PEAK 24(15Q22.33) WILD-TYPE"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-AG-A00Y                      TCGA-AG-A011 
  "DEL PEAK 24(15Q22.33) MUTATED"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-AG-A014                      TCGA-AG-A015 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-A016                      TCGA-AG-A01J 
"DEL PEAK 24(15Q22.33) WILD-TYPE"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-AG-A01L                      TCGA-AG-A01N 
  "DEL PEAK 24(15Q22.33) MUTATED" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-A01W                      TCGA-AG-A01Y 
  "DEL PEAK 24(15Q22.33) MUTATED" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-A020                      TCGA-AG-A023 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-A025                      TCGA-AG-A026 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-A02G                      TCGA-AG-A02N 
  "DEL PEAK 24(15Q22.33) MUTATED" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-A02X                      TCGA-AG-A032 
  "DEL PEAK 24(15Q22.33) MUTATED"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-AH-6544                      TCGA-AH-6547 
  "DEL PEAK 24(15Q22.33) MUTATED" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AH-6643                      TCGA-AH-6644 
  "DEL PEAK 24(15Q22.33) MUTATED" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AH-6897                      TCGA-AH-6903 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-BM-6198                      TCGA-CI-6619 
  "DEL PEAK 24(15Q22.33) MUTATED"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-CI-6620                      TCGA-CI-6622 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-CI-6623                      TCGA-CI-6624 
  "DEL PEAK 24(15Q22.33) MUTATED" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-CL-4957                      TCGA-CL-5917 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-CL-5918                      TCGA-DC-4745 
  "DEL PEAK 24(15Q22.33) MUTATED"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-DC-4749                      TCGA-DC-5337 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-DC-5869                      TCGA-DC-6154 
  "DEL PEAK 24(15Q22.33) MUTATED" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-DC-6155                      TCGA-DC-6156 
  "DEL PEAK 24(15Q22.33) MUTATED" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-DC-6157                      TCGA-DC-6158 
  "DEL PEAK 24(15Q22.33) MUTATED" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-DC-6160                      TCGA-DC-6681 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-DC-6682                      TCGA-DC-6683 
  "DEL PEAK 24(15Q22.33) MUTATED"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-DT-5265                      TCGA-DY-A0XA 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-DY-A1DC                      TCGA-DY-A1DD 
  "DEL PEAK 24(15Q22.33) MUTATED"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-DY-A1DE                      TCGA-DY-A1DF 
  "DEL PEAK 24(15Q22.33) MUTATED"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-DY-A1DG                      TCGA-DY-A1H8 
  "DEL PEAK 24(15Q22.33) MUTATED" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-EF-5830                      TCGA-EF-5831 
  "DEL PEAK 24(15Q22.33) MUTATED"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-EI-6506                      TCGA-EI-6507 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-EI-6508                      TCGA-EI-6509 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-EI-6510                      TCGA-EI-6511 
"DEL PEAK 24(15Q22.33) WILD-TYPE"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-EI-6512                      TCGA-EI-6513 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-EI-6514                      TCGA-EI-6881 
  "DEL PEAK 24(15Q22.33) MUTATED"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-EI-6882                      TCGA-EI-6883 
"DEL PEAK 24(15Q22.33) WILD-TYPE"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-EI-6884                      TCGA-EI-6885 
  "DEL PEAK 24(15Q22.33) MUTATED"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-EI-6917                      TCGA-EI-7002 
"DEL PEAK 24(15Q22.33) WILD-TYPE"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-EI-7004                      TCGA-F5-6465 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-F5-6571                      TCGA-F5-6702 
  "DEL PEAK 24(15Q22.33) MUTATED"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-F5-6810                      TCGA-F5-6811 
"DEL PEAK 24(15Q22.33) WILD-TYPE"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-F5-6812                      TCGA-F5-6813 
  "DEL PEAK 24(15Q22.33) MUTATED"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-F5-6814                      TCGA-F5-6861 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-F5-6863                      TCGA-F5-6864 
"DEL PEAK 24(15Q22.33) WILD-TYPE"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-G5-6233                      TCGA-G5-6235 
  "DEL PEAK 24(15Q22.33) MUTATED" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-G5-6572                      TCGA-G5-6641 
"DEL PEAK 24(15Q22.33) WILD-TYPE"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-AF-2687                      TCGA-AF-2689 
  "DEL PEAK 24(15Q22.33) MUTATED" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AF-2690                      TCGA-AF-2691 
"DEL PEAK 24(15Q22.33) WILD-TYPE"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-AF-2692                      TCGA-AF-2693 
  "DEL PEAK 24(15Q22.33) MUTATED" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AF-3400                      TCGA-AF-3911 
  "DEL PEAK 24(15Q22.33) MUTATED"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-AF-3913                      TCGA-AF-4110 
"DEL PEAK 24(15Q22.33) WILD-TYPE"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-AF-5654                      TCGA-AF-6136 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AF-6655                      TCGA-AF-6672 
"DEL PEAK 24(15Q22.33) WILD-TYPE"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-AG-3575                      TCGA-AG-3581 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-3582                      TCGA-AG-3583 
  "DEL PEAK 24(15Q22.33) MUTATED"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-AG-3586                      TCGA-AG-3587 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-3599                      TCGA-AG-3605 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-3726                      TCGA-AG-3727 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-3731                      TCGA-AG-3742 
"DEL PEAK 24(15Q22.33) WILD-TYPE"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-AG-3878                      TCGA-AG-3883 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-3887                      TCGA-AG-3892 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-3893                      TCGA-AG-3894 
  "DEL PEAK 24(15Q22.33) MUTATED" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-3896                      TCGA-AG-3999 
  "DEL PEAK 24(15Q22.33) MUTATED"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-AG-4001                      TCGA-AG-4007 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-4008                      TCGA-AG-4022 
  "DEL PEAK 24(15Q22.33) MUTATED" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-A002                      TCGA-AG-A008 
"DEL PEAK 24(15Q22.33) WILD-TYPE"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-AG-A00C                      TCGA-AG-A00H 
"DEL PEAK 24(15Q22.33) WILD-TYPE"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-AG-A00Y                      TCGA-AG-A011 
  "DEL PEAK 24(15Q22.33) MUTATED"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-AG-A014                      TCGA-AG-A015 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-A016                      TCGA-AG-A01J 
"DEL PEAK 24(15Q22.33) WILD-TYPE"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-AG-A01L                      TCGA-AG-A01N 
  "DEL PEAK 24(15Q22.33) MUTATED" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-A01W                      TCGA-AG-A01Y 
  "DEL PEAK 24(15Q22.33) MUTATED" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-A020                      TCGA-AG-A023 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-A025                      TCGA-AG-A026 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-A02G                      TCGA-AG-A02N 
  "DEL PEAK 24(15Q22.33) MUTATED" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-A02X                      TCGA-AG-A032 
  "DEL PEAK 24(15Q22.33) MUTATED"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-AH-6544                      TCGA-AH-6547 
  "DEL PEAK 24(15Q22.33) MUTATED" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AH-6643                      TCGA-AH-6644 
  "DEL PEAK 24(15Q22.33) MUTATED" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AH-6897                      TCGA-AH-6903 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-BM-6198                      TCGA-CI-6619 
  "DEL PEAK 24(15Q22.33) MUTATED"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-CI-6620                      TCGA-CI-6622 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-CI-6623                      TCGA-CI-6624 
  "DEL PEAK 24(15Q22.33) MUTATED" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-CL-4957                      TCGA-CL-5917 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-CL-5918                      TCGA-DC-4745 
  "DEL PEAK 24(15Q22.33) MUTATED"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-DC-4749                      TCGA-DC-5337 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-DC-5869                      TCGA-DC-6154 
  "DEL PEAK 24(15Q22.33) MUTATED" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-DC-6155                      TCGA-DC-6156 
  "DEL PEAK 24(15Q22.33) MUTATED" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-DC-6157                      TCGA-DC-6158 
  "DEL PEAK 24(15Q22.33) MUTATED" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-DC-6160                      TCGA-DC-6681 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-DC-6682                      TCGA-DC-6683 
  "DEL PEAK 24(15Q22.33) MUTATED"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-DT-5265                      TCGA-DY-A0XA 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-DY-A1DC                      TCGA-DY-A1DD 
  "DEL PEAK 24(15Q22.33) MUTATED"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-DY-A1DE                      TCGA-DY-A1DF 
  "DEL PEAK 24(15Q22.33) MUTATED"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-DY-A1DG                      TCGA-DY-A1H8 
  "DEL PEAK 24(15Q22.33) MUTATED" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-EF-5830                      TCGA-EF-5831 
  "DEL PEAK 24(15Q22.33) MUTATED"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-EI-6506                      TCGA-EI-6507 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-EI-6508                      TCGA-EI-6509 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-EI-6510                      TCGA-EI-6511 
"DEL PEAK 24(15Q22.33) WILD-TYPE"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-EI-6512                      TCGA-EI-6513 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-EI-6514                      TCGA-EI-6881 
  "DEL PEAK 24(15Q22.33) MUTATED"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-EI-6882                      TCGA-EI-6883 
"DEL PEAK 24(15Q22.33) WILD-TYPE"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-EI-6884                      TCGA-EI-6885 
  "DEL PEAK 24(15Q22.33) MUTATED"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-EI-6917                      TCGA-EI-7002 
"DEL PEAK 24(15Q22.33) WILD-TYPE"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-EI-7004                      TCGA-F5-6465 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-F5-6571                      TCGA-F5-6702 
  "DEL PEAK 24(15Q22.33) MUTATED"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-F5-6810                      TCGA-F5-6811 
"DEL PEAK 24(15Q22.33) WILD-TYPE"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-F5-6812                      TCGA-F5-6813 
  "DEL PEAK 24(15Q22.33) MUTATED"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-F5-6814                      TCGA-F5-6861 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-F5-6863                      TCGA-F5-6864 
"DEL PEAK 24(15Q22.33) WILD-TYPE"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-G5-6233                      TCGA-G5-6235 
  "DEL PEAK 24(15Q22.33) MUTATED" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-G5-6572                      TCGA-G5-6641 
"DEL PEAK 24(15Q22.33) WILD-TYPE"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-AF-2687                      TCGA-AF-2689 
  "DEL PEAK 24(15Q22.33) MUTATED" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AF-2690                      TCGA-AF-2691 
"DEL PEAK 24(15Q22.33) WILD-TYPE"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-AF-2692                      TCGA-AF-2693 
  "DEL PEAK 24(15Q22.33) MUTATED" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AF-3400                      TCGA-AF-3911 
  "DEL PEAK 24(15Q22.33) MUTATED"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-AF-3913                      TCGA-AF-4110 
"DEL PEAK 24(15Q22.33) WILD-TYPE"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-AF-5654                      TCGA-AF-6136 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AF-6655                      TCGA-AF-6672 
"DEL PEAK 24(15Q22.33) WILD-TYPE"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-AG-3575                      TCGA-AG-3581 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-3582                      TCGA-AG-3583 
  "DEL PEAK 24(15Q22.33) MUTATED"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-AG-3586                      TCGA-AG-3587 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-3599                      TCGA-AG-3605 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-3726                      TCGA-AG-3727 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-3731                      TCGA-AG-3742 
"DEL PEAK 24(15Q22.33) WILD-TYPE"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-AG-3878                      TCGA-AG-3883 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-3887                      TCGA-AG-3892 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-3893                      TCGA-AG-3894 
  "DEL PEAK 24(15Q22.33) MUTATED" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-3896                      TCGA-AG-3999 
  "DEL PEAK 24(15Q22.33) MUTATED"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-AG-4001                      TCGA-AG-4007 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-4008                      TCGA-AG-4022 
  "DEL PEAK 24(15Q22.33) MUTATED" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-A002                      TCGA-AG-A008 
"DEL PEAK 24(15Q22.33) WILD-TYPE"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-AG-A00C                      TCGA-AG-A00H 
"DEL PEAK 24(15Q22.33) WILD-TYPE"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-AG-A00Y                      TCGA-AG-A011 
  "DEL PEAK 24(15Q22.33) MUTATED"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-AG-A014                      TCGA-AG-A015 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-A016                      TCGA-AG-A01J 
"DEL PEAK 24(15Q22.33) WILD-TYPE"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-AG-A01L                      TCGA-AG-A01N 
  "DEL PEAK 24(15Q22.33) MUTATED" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-A01W                      TCGA-AG-A01Y 
  "DEL PEAK 24(15Q22.33) MUTATED" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-A020                      TCGA-AG-A023 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-A025                      TCGA-AG-A026 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-A02G                      TCGA-AG-A02N 
  "DEL PEAK 24(15Q22.33) MUTATED" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-A02X                      TCGA-AG-A032 
  "DEL PEAK 24(15Q22.33) MUTATED"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-AH-6544                      TCGA-AH-6547 
  "DEL PEAK 24(15Q22.33) MUTATED" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AH-6643                      TCGA-AH-6644 
  "DEL PEAK 24(15Q22.33) MUTATED" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AH-6897                      TCGA-AH-6903 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-BM-6198                      TCGA-CI-6619 
  "DEL PEAK 24(15Q22.33) MUTATED"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-CI-6620                      TCGA-CI-6622 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-CI-6623                      TCGA-CI-6624 
  "DEL PEAK 24(15Q22.33) MUTATED" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-CL-4957                      TCGA-CL-5917 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-CL-5918                      TCGA-DC-4745 
  "DEL PEAK 24(15Q22.33) MUTATED"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-DC-4749                      TCGA-DC-5337 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-DC-5869                      TCGA-DC-6154 
  "DEL PEAK 24(15Q22.33) MUTATED" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-DC-6155                      TCGA-DC-6156 
  "DEL PEAK 24(15Q22.33) MUTATED" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-DC-6157                      TCGA-DC-6158 
  "DEL PEAK 24(15Q22.33) MUTATED" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-DC-6160                      TCGA-DC-6681 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-DC-6682                      TCGA-DC-6683 
  "DEL PEAK 24(15Q22.33) MUTATED"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-DT-5265                      TCGA-DY-A0XA 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-DY-A1DC                      TCGA-DY-A1DD 
  "DEL PEAK 24(15Q22.33) MUTATED"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-DY-A1DE                      TCGA-DY-A1DF 
  "DEL PEAK 24(15Q22.33) MUTATED"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-DY-A1DG                      TCGA-DY-A1H8 
  "DEL PEAK 24(15Q22.33) MUTATED" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-EF-5830                      TCGA-EF-5831 
  "DEL PEAK 24(15Q22.33) MUTATED"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-EI-6506                      TCGA-EI-6507 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-EI-6508                      TCGA-EI-6509 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-EI-6510                      TCGA-EI-6511 
"DEL PEAK 24(15Q22.33) WILD-TYPE"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-EI-6512                      TCGA-EI-6513 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-EI-6514                      TCGA-EI-6881 
  "DEL PEAK 24(15Q22.33) MUTATED"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-EI-6882                      TCGA-EI-6883 
"DEL PEAK 24(15Q22.33) WILD-TYPE"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-EI-6884                      TCGA-EI-6885 
  "DEL PEAK 24(15Q22.33) MUTATED"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-EI-6917                      TCGA-EI-7002 
"DEL PEAK 24(15Q22.33) WILD-TYPE"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-EI-7004                      TCGA-F5-6465 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-F5-6571                      TCGA-F5-6702 
  "DEL PEAK 24(15Q22.33) MUTATED"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-F5-6810                      TCGA-F5-6811 
"DEL PEAK 24(15Q22.33) WILD-TYPE"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-F5-6812                      TCGA-F5-6813 
  "DEL PEAK 24(15Q22.33) MUTATED"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-F5-6814                      TCGA-F5-6861 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-F5-6863                      TCGA-F5-6864 
"DEL PEAK 24(15Q22.33) WILD-TYPE"   "DEL PEAK 24(15Q22.33) MUTATED" 
                     TCGA-G5-6233                      TCGA-G5-6235 
  "DEL PEAK 24(15Q22.33) MUTATED" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-G5-6572                      TCGA-G5-6641 
"DEL PEAK 24(15Q22.33) WILD-TYPE"   "DEL PEAK 24(15Q22.33) MUTATED" 
[1] "hr=" "1.1"
D49V2, continuous
                                 vv
clus                              STAGE I STAGE II STAGE IIA STAGE IIB
  DEL PEAK 24(15Q22.33) MUTATED         9        1        23         1
  DEL PEAK 24(15Q22.33) WILD-TYPE      21        7        15         1
                                 vv
clus                              STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  DEL PEAK 24(15Q22.33) MUTATED           2         2          4         13
  DEL PEAK 24(15Q22.33) WILD-TYPE         0         3          5         10
                                 vv
clus                              STAGE IIIC STAGE IV STAGE IVA
  DEL PEAK 24(15Q22.33) MUTATED            8        9         3
  DEL PEAK 24(15Q22.33) WILD-TYPE          6        8         6
D49V3, multiclass
                                 vv
clus                              T1 T2 T3 T4
  DEL PEAK 24(15Q22.33) MUTATED    4  8 60  4
  DEL PEAK 24(15Q22.33) WILD-TYPE  5 21 49 10
D49V4, multiclass
    clus
vv   DEL PEAK 24(15Q22.33) MUTATED DEL PEAK 24(15Q22.33) WILD-TYPE
  T1                             4                               5
  T2                             8                              21
  T3                            60                              49
  T4                             4                              10
                                 vv
clus                              N0 N1 N2
  DEL PEAK 24(15Q22.33) MUTATED   35 25 16
  DEL PEAK 24(15Q22.33) WILD-TYPE 48 20 16
D49V5, multiclass
    clus
vv   DEL PEAK 24(15Q22.33) MUTATED DEL PEAK 24(15Q22.33) WILD-TYPE
  N0                            35                              48
  N1                            25                              20
  N2                            16                              16
                                 vv
clus                              M0 M1 M1A MX
  DEL PEAK 24(15Q22.33) MUTATED   58 11   0  6
  DEL PEAK 24(15Q22.33) WILD-TYPE 65 11   2  7
D49V6, multiclass
     clus
vv    DEL PEAK 24(15Q22.33) MUTATED DEL PEAK 24(15Q22.33) WILD-TYPE
  M0                             58                              65
  M1                             11                              11
  M1A                             0                               2
  MX                              6                               7
D49V7, binary
                                 cls
clus                               0  1
  DEL PEAK 24(15Q22.33) MUTATED   32 44
  DEL PEAK 24(15Q22.33) WILD-TYPE 42 44
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 24(15Q22.33) MUTATED     32   44
  DEL PEAK 24(15Q22.33) WILD-TYPE   42   44
        clus
vv       DEL PEAK 24(15Q22.33) MUTATED DEL PEAK 24(15Q22.33) WILD-TYPE
  FEMALE                            32                              42
  MALE                              44                              44
D49V8, binary
                                 cls
clus                               0  1
  DEL PEAK 24(15Q22.33) MUTATED   67  6
  DEL PEAK 24(15Q22.33) WILD-TYPE 76  7
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 24(15Q22.33) MUTATED     67    6
  DEL PEAK 24(15Q22.33) WILD-TYPE   76    7
                                clus
vv                               DEL PEAK 24(15Q22.33) MUTATED
  RECTAL ADENOCARCINOMA                                     67
  RECTAL MUCINOUS ADENOCARCINOMA                             6
                                clus
vv                               DEL PEAK 24(15Q22.33) WILD-TYPE
  RECTAL ADENOCARCINOMA                                       76
  RECTAL MUCINOUS ADENOCARCINOMA                               7
D49V9, binary
                                 cls
clus                               0  1
  DEL PEAK 24(15Q22.33) MUTATED    5 71
  DEL PEAK 24(15Q22.33) WILD-TYPE  1 85
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 24(15Q22.33) MUTATED      5   71
  DEL PEAK 24(15Q22.33) WILD-TYPE    1   85
     clus
vv    DEL PEAK 24(15Q22.33) MUTATED DEL PEAK 24(15Q22.33) WILD-TYPE
  NO                              5                               1
  YES                            71                              85
                                 vv
clus                              R0 R1 R2 RX
  DEL PEAK 24(15Q22.33) MUTATED   58  0  4  1
  DEL PEAK 24(15Q22.33) WILD-TYPE 63  2  8  2
D49V10, multiclass
    clus
vv   DEL PEAK 24(15Q22.33) MUTATED DEL PEAK 24(15Q22.33) WILD-TYPE
  R0                            58                              63
  R1                             0                               2
  R2                             4                               8
  RX                             1                               2
D49V11, continuous

Clustering(50) Variable = DEL PEAK 25(16P13.3) MUTATION ANALYSIS
D50V1, survival
                                sevent
clus2                              0   1
  DEL PEAK 25(16P13.3) MUTATED     5   2
  DEL PEAK 25(16P13.3) WILD-TYPE 112  11
  DEL PEAK 25(16P13.3) MUTATED DEL PEAK 25(16P13.3) WILD-TYPE 
                             7                            123 
  DEL PEAK 25(16P13.3) MUTATED DEL PEAK 25(16P13.3) WILD-TYPE 
                             2                             11 
$`DEL PEAK 25(16P13.3) MUTATED`
TCGA-AG-3726 TCGA-AG-A02G TCGA-DC-6682 TCGA-EI-6882 TCGA-F5-6811 TCGA-F5-6814 
        7.96        38.93        13.02         8.61         1.02         0.53 
TCGA-G5-6233 
       18.25 

$`DEL PEAK 25(16P13.3) WILD-TYPE`
TCGA-AF-2687 TCGA-AF-2689 TCGA-AF-2690 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-2693 
       24.13        17.95        17.23        10.62        13.55        19.10 
TCGA-AF-3400 TCGA-AF-3911 TCGA-AF-3913 TCGA-AF-4110 TCGA-AF-5654 TCGA-AF-6136 
       12.72        25.02        10.39        14.50         8.45        15.35 
TCGA-AF-6655 TCGA-AF-6672 TCGA-AG-3575 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 
       11.67        10.39        12.00         1.02         1.02         2.01 
TCGA-AG-3586 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3605 TCGA-AG-3727 TCGA-AG-3731 
        1.02         1.02         0.99         0.99         0.95         1.02 
TCGA-AG-3742 TCGA-AG-3878 TCGA-AG-3883 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 
        0.99         0.99         1.02         0.92         1.02         0.99 
TCGA-AG-3894 TCGA-AG-3896 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 
        0.99         1.02         1.02         1.02         1.02         1.02 
TCGA-AG-4022 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y 
        0.99        20.94        13.91         6.02        25.94        23.01 
TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01J TCGA-AG-A01L 
       17.03        15.91        13.02         1.02         1.02        12.00 
TCGA-AG-A01N TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A023 TCGA-AG-A025 
       12.00        70.03        63.98        10.98        51.98        49.94 
TCGA-AG-A026 TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AH-6544 TCGA-AH-6547 
        1.94        61.94        40.96        38.01         0.49         1.45 
TCGA-AH-6643 TCGA-AH-6644 TCGA-AH-6897 TCGA-AH-6903 TCGA-BM-6198 TCGA-CI-6619 
        0.69         0.72         4.60         1.81        10.19         6.02 
TCGA-CI-6620 TCGA-CI-6622 TCGA-CI-6623 TCGA-CI-6624 TCGA-CL-4957 TCGA-CL-5917 
        6.02         6.94         9.37         4.70        13.97        60.00 
TCGA-CL-5918 TCGA-DC-4745 TCGA-DC-4749 TCGA-DC-5337 TCGA-DC-5869 TCGA-DC-6154 
        7.99        10.98        11.01        15.02        12.99        12.00 
TCGA-DC-6155 TCGA-DC-6156 TCGA-DC-6157 TCGA-DC-6158 TCGA-DC-6160 TCGA-DC-6681 
       14.01        15.02        36.00         6.97        30.05        12.95 
TCGA-DC-6683 TCGA-DT-5265 TCGA-DY-A0XA TCGA-DY-A1DC TCGA-DY-A1DD TCGA-DY-A1DE 
       10.06         5.29       126.41        41.33        57.24       129.27 
TCGA-DY-A1DF TCGA-DY-A1DG TCGA-DY-A1H8 TCGA-EF-5830 TCGA-EF-5831 TCGA-EI-6506 
       24.13        51.48        32.58         0.49         2.40        20.55 
TCGA-EI-6507 TCGA-EI-6508 TCGA-EI-6509 TCGA-EI-6510 TCGA-EI-6511 TCGA-EI-6512 
       19.96        20.91        17.00        18.28        15.85        17.69 
TCGA-EI-6513 TCGA-EI-6514 TCGA-EI-6881 TCGA-EI-6883 TCGA-EI-6884 TCGA-EI-6885 
       16.34        16.31        16.37        11.51        10.78        13.61 
TCGA-EI-6917 TCGA-EI-7002 TCGA-EI-7004 TCGA-F5-6465 TCGA-F5-6571 TCGA-F5-6702 
       17.46        11.97         8.45         3.39         0.85         2.17 
TCGA-F5-6810 TCGA-F5-6812 TCGA-F5-6813 TCGA-F5-6861 TCGA-F5-6863 TCGA-F5-6864 
        0.39         0.66         0.69         1.08         0.76         0.46 
TCGA-G5-6235 TCGA-G5-6572 TCGA-G5-6641 
       55.76        47.08        26.43 

  DEL PEAK 25(16P13.3) MUTATED DEL PEAK 25(16P13.3) WILD-TYPE 
                          0.53                           0.39 
  DEL PEAK 25(16P13.3) MUTATED DEL PEAK 25(16P13.3) WILD-TYPE 
                         38.93                         129.27 
  DEL PEAK 25(16P13.3) MUTATED DEL PEAK 25(16P13.3) WILD-TYPE 
                          8.61                          11.01 
[1] "0.5 - 38.9 (8.6)"   "0.4 - 129.3 (11.0)"
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-3575                     TCGA-AG-3581 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-3582                     TCGA-AG-3583 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
  "DEL PEAK 25(16P13.3) MUTATED" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-4001                     TCGA-AG-4007 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-4008                     TCGA-AG-4022 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
  "DEL PEAK 25(16P13.3) MUTATED" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AH-6544                     TCGA-AH-6547 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AH-6897                     TCGA-AH-6903 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-CL-4957                     TCGA-CL-5917 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-CL-5918                     TCGA-DC-4745 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DC-4749                     TCGA-DC-5337 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DC-6155                     TCGA-DC-6156 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DC-6157                     TCGA-DC-6158 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DC-6160                     TCGA-DC-6681 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
  "DEL PEAK 25(16P13.3) MUTATED" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EF-5830                     TCGA-EF-5831 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EI-6506                     TCGA-EI-6507 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EI-6512                     TCGA-EI-6513 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EI-6514                     TCGA-EI-6881 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EI-6882                     TCGA-EI-6883 
  "DEL PEAK 25(16P13.3) MUTATED" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EI-6884                     TCGA-EI-6885 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EI-7004                     TCGA-F5-6465 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-F5-6571                     TCGA-F5-6702 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-F5-6810                     TCGA-F5-6811 
"DEL PEAK 25(16P13.3) WILD-TYPE"   "DEL PEAK 25(16P13.3) MUTATED" 
                    TCGA-F5-6812                     TCGA-F5-6813 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
  "DEL PEAK 25(16P13.3) MUTATED" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-G5-6233                     TCGA-G5-6235 
  "DEL PEAK 25(16P13.3) MUTATED" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-3575                     TCGA-AG-3581 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-3582                     TCGA-AG-3583 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
  "DEL PEAK 25(16P13.3) MUTATED" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-4001                     TCGA-AG-4007 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-4008                     TCGA-AG-4022 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
  "DEL PEAK 25(16P13.3) MUTATED" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AH-6544                     TCGA-AH-6547 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AH-6897                     TCGA-AH-6903 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-CL-4957                     TCGA-CL-5917 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-CL-5918                     TCGA-DC-4745 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DC-4749                     TCGA-DC-5337 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DC-6155                     TCGA-DC-6156 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DC-6157                     TCGA-DC-6158 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DC-6160                     TCGA-DC-6681 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
  "DEL PEAK 25(16P13.3) MUTATED" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EF-5830                     TCGA-EF-5831 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EI-6506                     TCGA-EI-6507 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EI-6512                     TCGA-EI-6513 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EI-6514                     TCGA-EI-6881 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EI-6882                     TCGA-EI-6883 
  "DEL PEAK 25(16P13.3) MUTATED" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EI-6884                     TCGA-EI-6885 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EI-7004                     TCGA-F5-6465 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-F5-6571                     TCGA-F5-6702 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-F5-6810                     TCGA-F5-6811 
"DEL PEAK 25(16P13.3) WILD-TYPE"   "DEL PEAK 25(16P13.3) MUTATED" 
                    TCGA-F5-6812                     TCGA-F5-6813 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
  "DEL PEAK 25(16P13.3) MUTATED" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-G5-6233                     TCGA-G5-6235 
  "DEL PEAK 25(16P13.3) MUTATED" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-3575                     TCGA-AG-3581 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-3582                     TCGA-AG-3583 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
  "DEL PEAK 25(16P13.3) MUTATED" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-4001                     TCGA-AG-4007 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-4008                     TCGA-AG-4022 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
  "DEL PEAK 25(16P13.3) MUTATED" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AH-6544                     TCGA-AH-6547 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AH-6897                     TCGA-AH-6903 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-CL-4957                     TCGA-CL-5917 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-CL-5918                     TCGA-DC-4745 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DC-4749                     TCGA-DC-5337 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DC-6155                     TCGA-DC-6156 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DC-6157                     TCGA-DC-6158 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DC-6160                     TCGA-DC-6681 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
  "DEL PEAK 25(16P13.3) MUTATED" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EF-5830                     TCGA-EF-5831 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EI-6506                     TCGA-EI-6507 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EI-6512                     TCGA-EI-6513 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EI-6514                     TCGA-EI-6881 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EI-6882                     TCGA-EI-6883 
  "DEL PEAK 25(16P13.3) MUTATED" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EI-6884                     TCGA-EI-6885 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EI-7004                     TCGA-F5-6465 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-F5-6571                     TCGA-F5-6702 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-F5-6810                     TCGA-F5-6811 
"DEL PEAK 25(16P13.3) WILD-TYPE"   "DEL PEAK 25(16P13.3) MUTATED" 
                    TCGA-F5-6812                     TCGA-F5-6813 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
  "DEL PEAK 25(16P13.3) MUTATED" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-G5-6233                     TCGA-G5-6235 
  "DEL PEAK 25(16P13.3) MUTATED" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
[1] "hr=" "5.7"
D50V2, continuous
                                vv
clus                             STAGE I STAGE II STAGE IIA STAGE IIB STAGE IIC
  DEL PEAK 25(16P13.3) MUTATED         1        0         7         0         1
  DEL PEAK 25(16P13.3) WILD-TYPE      29        8        31         2         1
                                vv
clus                             STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  DEL PEAK 25(16P13.3) MUTATED           0          0          0          2
  DEL PEAK 25(16P13.3) WILD-TYPE         5          9         23         12
                                vv
clus                             STAGE IV STAGE IVA
  DEL PEAK 25(16P13.3) MUTATED          2         0
  DEL PEAK 25(16P13.3) WILD-TYPE       15         9
D50V3, multiclass
                                vv
clus                             T1 T2 T3 T4
  DEL PEAK 25(16P13.3) MUTATED    0  3 10  0
  DEL PEAK 25(16P13.3) WILD-TYPE  9 26 99 14
D50V4, multiclass
    clus
vv   DEL PEAK 25(16P13.3) MUTATED DEL PEAK 25(16P13.3) WILD-TYPE
  T1                            0                              9
  T2                            3                             26
  T3                           10                             99
  T4                            0                             14
                                vv
clus                             N0 N1 N2
  DEL PEAK 25(16P13.3) MUTATED    8  1  4
  DEL PEAK 25(16P13.3) WILD-TYPE 75 44 28
D50V5, multiclass
    clus
vv   DEL PEAK 25(16P13.3) MUTATED DEL PEAK 25(16P13.3) WILD-TYPE
  N0                            8                             75
  N1                            1                             44
  N2                            4                             28
                                vv
clus                              M0  M1 M1A  MX
  DEL PEAK 25(16P13.3) MUTATED    11   2   0   0
  DEL PEAK 25(16P13.3) WILD-TYPE 112  20   2  13
D50V6, multiclass
     clus
vv    DEL PEAK 25(16P13.3) MUTATED DEL PEAK 25(16P13.3) WILD-TYPE
  M0                            11                            112
  M1                             2                             20
  M1A                            0                              2
  MX                             0                             13
D50V7, binary
                                cls
clus                              0  1
  DEL PEAK 25(16P13.3) MUTATED    6  7
  DEL PEAK 25(16P13.3) WILD-TYPE 68 81
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 25(16P13.3) MUTATED      6    7
  DEL PEAK 25(16P13.3) WILD-TYPE   68   81
        clus
vv       DEL PEAK 25(16P13.3) MUTATED DEL PEAK 25(16P13.3) WILD-TYPE
  FEMALE                            6                             68
  MALE                              7                             81
D50V8, binary
                                cls
clus                               0   1
  DEL PEAK 25(16P13.3) MUTATED    10   2
  DEL PEAK 25(16P13.3) WILD-TYPE 133  11
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 25(16P13.3) MUTATED     10    2
  DEL PEAK 25(16P13.3) WILD-TYPE  133   11
                                clus
vv                               DEL PEAK 25(16P13.3) MUTATED
  RECTAL ADENOCARCINOMA                                    10
  RECTAL MUCINOUS ADENOCARCINOMA                            2
                                clus
vv                               DEL PEAK 25(16P13.3) WILD-TYPE
  RECTAL ADENOCARCINOMA                                     133
  RECTAL MUCINOUS ADENOCARCINOMA                             11
D50V9, binary
                                cls
clus                               0   1
  DEL PEAK 25(16P13.3) MUTATED     0  13
  DEL PEAK 25(16P13.3) WILD-TYPE   6 143
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 25(16P13.3) MUTATED      0   13
  DEL PEAK 25(16P13.3) WILD-TYPE    6  143
     clus
vv    DEL PEAK 25(16P13.3) MUTATED DEL PEAK 25(16P13.3) WILD-TYPE
  NO                             0                              6
  YES                           13                            143
                                vv
clus                              R0  R1  R2  RX
  DEL PEAK 25(16P13.3) MUTATED    10   0   1   0
  DEL PEAK 25(16P13.3) WILD-TYPE 111   2  11   3
D50V10, multiclass
    clus
vv   DEL PEAK 25(16P13.3) MUTATED DEL PEAK 25(16P13.3) WILD-TYPE
  R0                           10                            111
  R1                            0                              2
  R2                            1                             11
  RX                            0                              3
D50V11, continuous

Clustering(51) Variable = DEL PEAK 26(16Q23.1) MUTATION ANALYSIS
D51V1, survival
                                sevent
clus2                              0   1
  DEL PEAK 26(16Q23.1) MUTATED    13   1
  DEL PEAK 26(16Q23.1) WILD-TYPE 104  12
  DEL PEAK 26(16Q23.1) MUTATED DEL PEAK 26(16Q23.1) WILD-TYPE 
                            14                            116 
  DEL PEAK 26(16Q23.1) MUTATED DEL PEAK 26(16Q23.1) WILD-TYPE 
                             1                             12 
$`DEL PEAK 26(16Q23.1) MUTATED`
TCGA-AF-6672 TCGA-AG-3582 TCGA-AG-3726 TCGA-AG-3883 TCGA-AH-6544 TCGA-AH-6644 
       10.39         1.02         7.96         1.02         0.49         0.72 
TCGA-DC-6682 TCGA-DY-A1DE TCGA-EI-6883 TCGA-EI-7002 TCGA-EI-7004 TCGA-F5-6811 
       13.02       129.27        11.51        11.97         8.45         1.02 
TCGA-F5-6814 TCGA-G5-6233 
        0.53        18.25 

$`DEL PEAK 26(16Q23.1) WILD-TYPE`
TCGA-AF-2687 TCGA-AF-2689 TCGA-AF-2690 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-2693 
       24.13        17.95        17.23        10.62        13.55        19.10 
TCGA-AF-3400 TCGA-AF-3911 TCGA-AF-3913 TCGA-AF-4110 TCGA-AF-5654 TCGA-AF-6136 
       12.72        25.02        10.39        14.50         8.45        15.35 
TCGA-AF-6655 TCGA-AG-3575 TCGA-AG-3581 TCGA-AG-3583 TCGA-AG-3586 TCGA-AG-3587 
       11.67        12.00         1.02         2.01         1.02         1.02 
TCGA-AG-3599 TCGA-AG-3605 TCGA-AG-3727 TCGA-AG-3731 TCGA-AG-3742 TCGA-AG-3878 
        0.99         0.99         0.95         1.02         0.99         0.99 
TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3896 TCGA-AG-3999 
        0.92         1.02         0.99         0.99         1.02         1.02 
TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-4022 TCGA-AG-A002 TCGA-AG-A008 
        1.02         1.02         1.02         0.99        20.94        13.91 
TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 
        6.02        25.94        23.01        17.03        15.91        13.02 
TCGA-AG-A016 TCGA-AG-A01J TCGA-AG-A01L TCGA-AG-A01N TCGA-AG-A01W TCGA-AG-A01Y 
        1.02         1.02        12.00        12.00        70.03        63.98 
TCGA-AG-A020 TCGA-AG-A023 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N 
       10.98        51.98        49.94         1.94        38.93        61.94 
TCGA-AG-A02X TCGA-AG-A032 TCGA-AH-6547 TCGA-AH-6643 TCGA-AH-6897 TCGA-AH-6903 
       40.96        38.01         1.45         0.69         4.60         1.81 
TCGA-BM-6198 TCGA-CI-6619 TCGA-CI-6620 TCGA-CI-6622 TCGA-CI-6623 TCGA-CI-6624 
       10.19         6.02         6.02         6.94         9.37         4.70 
TCGA-CL-4957 TCGA-CL-5917 TCGA-CL-5918 TCGA-DC-4745 TCGA-DC-4749 TCGA-DC-5337 
       13.97        60.00         7.99        10.98        11.01        15.02 
TCGA-DC-5869 TCGA-DC-6154 TCGA-DC-6155 TCGA-DC-6156 TCGA-DC-6157 TCGA-DC-6158 
       12.99        12.00        14.01        15.02        36.00         6.97 
TCGA-DC-6160 TCGA-DC-6681 TCGA-DC-6683 TCGA-DT-5265 TCGA-DY-A0XA TCGA-DY-A1DC 
       30.05        12.95        10.06         5.29       126.41        41.33 
TCGA-DY-A1DD TCGA-DY-A1DF TCGA-DY-A1DG TCGA-DY-A1H8 TCGA-EF-5830 TCGA-EF-5831 
       57.24        24.13        51.48        32.58         0.49         2.40 
TCGA-EI-6506 TCGA-EI-6507 TCGA-EI-6508 TCGA-EI-6509 TCGA-EI-6510 TCGA-EI-6511 
       20.55        19.96        20.91        17.00        18.28        15.85 
TCGA-EI-6512 TCGA-EI-6513 TCGA-EI-6514 TCGA-EI-6881 TCGA-EI-6882 TCGA-EI-6884 
       17.69        16.34        16.31        16.37         8.61        10.78 
TCGA-EI-6885 TCGA-EI-6917 TCGA-F5-6465 TCGA-F5-6571 TCGA-F5-6702 TCGA-F5-6810 
       13.61        17.46         3.39         0.85         2.17         0.39 
TCGA-F5-6812 TCGA-F5-6813 TCGA-F5-6861 TCGA-F5-6863 TCGA-F5-6864 TCGA-G5-6235 
        0.66         0.69         1.08         0.76         0.46        55.76 
TCGA-G5-6572 TCGA-G5-6641 
       47.08        26.43 

  DEL PEAK 26(16Q23.1) MUTATED DEL PEAK 26(16Q23.1) WILD-TYPE 
                          0.49                           0.39 
  DEL PEAK 26(16Q23.1) MUTATED DEL PEAK 26(16Q23.1) WILD-TYPE 
                        129.27                         126.41 
  DEL PEAK 26(16Q23.1) MUTATED DEL PEAK 26(16Q23.1) WILD-TYPE 
                         8.205                         11.835 
[1] "0.5 - 129.3 (8.2)"  "0.4 - 126.4 (11.8)"
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 26(16Q23.1) WILD-TYPE"   "DEL PEAK 26(16Q23.1) MUTATED" 
                    TCGA-AG-3575                     TCGA-AG-3581 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-3582                     TCGA-AG-3583 
  "DEL PEAK 26(16Q23.1) MUTATED" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
  "DEL PEAK 26(16Q23.1) MUTATED" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"DEL PEAK 26(16Q23.1) WILD-TYPE"   "DEL PEAK 26(16Q23.1) MUTATED" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-4001                     TCGA-AG-4007 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-4008                     TCGA-AG-4022 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AH-6544                     TCGA-AH-6547 
  "DEL PEAK 26(16Q23.1) MUTATED" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
"DEL PEAK 26(16Q23.1) WILD-TYPE"   "DEL PEAK 26(16Q23.1) MUTATED" 
                    TCGA-AH-6897                     TCGA-AH-6903 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-CL-4957                     TCGA-CL-5917 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-CL-5918                     TCGA-DC-4745 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-DC-4749                     TCGA-DC-5337 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-DC-6155                     TCGA-DC-6156 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-DC-6157                     TCGA-DC-6158 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-DC-6160                     TCGA-DC-6681 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
  "DEL PEAK 26(16Q23.1) MUTATED" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
  "DEL PEAK 26(16Q23.1) MUTATED" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-EF-5830                     TCGA-EF-5831 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-EI-6506                     TCGA-EI-6507 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-EI-6512                     TCGA-EI-6513 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-EI-6514                     TCGA-EI-6881 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"DEL PEAK 26(16Q23.1) WILD-TYPE"   "DEL PEAK 26(16Q23.1) MUTATED" 
                    TCGA-EI-6884                     TCGA-EI-6885 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"DEL PEAK 26(16Q23.1) WILD-TYPE"   "DEL PEAK 26(16Q23.1) MUTATED" 
                    TCGA-EI-7004                     TCGA-F5-6465 
  "DEL PEAK 26(16Q23.1) MUTATED" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-F5-6571                     TCGA-F5-6702 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-F5-6810                     TCGA-F5-6811 
"DEL PEAK 26(16Q23.1) WILD-TYPE"   "DEL PEAK 26(16Q23.1) MUTATED" 
                    TCGA-F5-6812                     TCGA-F5-6813 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
  "DEL PEAK 26(16Q23.1) MUTATED" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-G5-6233                     TCGA-G5-6235 
  "DEL PEAK 26(16Q23.1) MUTATED" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 26(16Q23.1) WILD-TYPE"   "DEL PEAK 26(16Q23.1) MUTATED" 
                    TCGA-AG-3575                     TCGA-AG-3581 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-3582                     TCGA-AG-3583 
  "DEL PEAK 26(16Q23.1) MUTATED" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
  "DEL PEAK 26(16Q23.1) MUTATED" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"DEL PEAK 26(16Q23.1) WILD-TYPE"   "DEL PEAK 26(16Q23.1) MUTATED" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-4001                     TCGA-AG-4007 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-4008                     TCGA-AG-4022 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AH-6544                     TCGA-AH-6547 
  "DEL PEAK 26(16Q23.1) MUTATED" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
"DEL PEAK 26(16Q23.1) WILD-TYPE"   "DEL PEAK 26(16Q23.1) MUTATED" 
                    TCGA-AH-6897                     TCGA-AH-6903 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-CL-4957                     TCGA-CL-5917 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-CL-5918                     TCGA-DC-4745 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-DC-4749                     TCGA-DC-5337 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-DC-6155                     TCGA-DC-6156 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-DC-6157                     TCGA-DC-6158 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-DC-6160                     TCGA-DC-6681 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
  "DEL PEAK 26(16Q23.1) MUTATED" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
  "DEL PEAK 26(16Q23.1) MUTATED" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-EF-5830                     TCGA-EF-5831 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-EI-6506                     TCGA-EI-6507 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-EI-6512                     TCGA-EI-6513 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-EI-6514                     TCGA-EI-6881 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"DEL PEAK 26(16Q23.1) WILD-TYPE"   "DEL PEAK 26(16Q23.1) MUTATED" 
                    TCGA-EI-6884                     TCGA-EI-6885 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"DEL PEAK 26(16Q23.1) WILD-TYPE"   "DEL PEAK 26(16Q23.1) MUTATED" 
                    TCGA-EI-7004                     TCGA-F5-6465 
  "DEL PEAK 26(16Q23.1) MUTATED" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-F5-6571                     TCGA-F5-6702 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-F5-6810                     TCGA-F5-6811 
"DEL PEAK 26(16Q23.1) WILD-TYPE"   "DEL PEAK 26(16Q23.1) MUTATED" 
                    TCGA-F5-6812                     TCGA-F5-6813 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
  "DEL PEAK 26(16Q23.1) MUTATED" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-G5-6233                     TCGA-G5-6235 
  "DEL PEAK 26(16Q23.1) MUTATED" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 26(16Q23.1) WILD-TYPE"   "DEL PEAK 26(16Q23.1) MUTATED" 
                    TCGA-AG-3575                     TCGA-AG-3581 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-3582                     TCGA-AG-3583 
  "DEL PEAK 26(16Q23.1) MUTATED" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
  "DEL PEAK 26(16Q23.1) MUTATED" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"DEL PEAK 26(16Q23.1) WILD-TYPE"   "DEL PEAK 26(16Q23.1) MUTATED" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-4001                     TCGA-AG-4007 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-4008                     TCGA-AG-4022 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AH-6544                     TCGA-AH-6547 
  "DEL PEAK 26(16Q23.1) MUTATED" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
"DEL PEAK 26(16Q23.1) WILD-TYPE"   "DEL PEAK 26(16Q23.1) MUTATED" 
                    TCGA-AH-6897                     TCGA-AH-6903 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-CL-4957                     TCGA-CL-5917 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-CL-5918                     TCGA-DC-4745 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-DC-4749                     TCGA-DC-5337 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-DC-6155                     TCGA-DC-6156 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-DC-6157                     TCGA-DC-6158 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-DC-6160                     TCGA-DC-6681 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
  "DEL PEAK 26(16Q23.1) MUTATED" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
  "DEL PEAK 26(16Q23.1) MUTATED" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-EF-5830                     TCGA-EF-5831 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-EI-6506                     TCGA-EI-6507 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-EI-6512                     TCGA-EI-6513 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-EI-6514                     TCGA-EI-6881 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"DEL PEAK 26(16Q23.1) WILD-TYPE"   "DEL PEAK 26(16Q23.1) MUTATED" 
                    TCGA-EI-6884                     TCGA-EI-6885 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"DEL PEAK 26(16Q23.1) WILD-TYPE"   "DEL PEAK 26(16Q23.1) MUTATED" 
                    TCGA-EI-7004                     TCGA-F5-6465 
  "DEL PEAK 26(16Q23.1) MUTATED" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-F5-6571                     TCGA-F5-6702 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-F5-6810                     TCGA-F5-6811 
"DEL PEAK 26(16Q23.1) WILD-TYPE"   "DEL PEAK 26(16Q23.1) MUTATED" 
                    TCGA-F5-6812                     TCGA-F5-6813 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
  "DEL PEAK 26(16Q23.1) MUTATED" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-G5-6233                     TCGA-G5-6235 
  "DEL PEAK 26(16Q23.1) MUTATED" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
[1] "hr=" "1.1"
D51V2, continuous
                                vv
clus                             STAGE I STAGE II STAGE IIA STAGE IIB STAGE IIC
  DEL PEAK 26(16Q23.1) MUTATED         3        0         7         0         2
  DEL PEAK 26(16Q23.1) WILD-TYPE      27        8        31         2         0
                                vv
clus                             STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  DEL PEAK 26(16Q23.1) MUTATED           1          0          0          3
  DEL PEAK 26(16Q23.1) WILD-TYPE         4          9         23         11
                                vv
clus                             STAGE IV STAGE IVA
  DEL PEAK 26(16Q23.1) MUTATED          4         1
  DEL PEAK 26(16Q23.1) WILD-TYPE       13         8
D51V3, multiclass
                                vv
clus                             T1 T2 T3 T4
  DEL PEAK 26(16Q23.1) MUTATED    0  4 16  3
  DEL PEAK 26(16Q23.1) WILD-TYPE  9 25 93 11
D51V4, multiclass
    clus
vv   DEL PEAK 26(16Q23.1) MUTATED DEL PEAK 26(16Q23.1) WILD-TYPE
  T1                            0                              9
  T2                            4                             25
  T3                           16                             93
  T4                            3                             11
                                vv
clus                             N0 N1 N2
  DEL PEAK 26(16Q23.1) MUTATED   11  2  9
  DEL PEAK 26(16Q23.1) WILD-TYPE 72 43 23
D51V5, multiclass
    clus
vv   DEL PEAK 26(16Q23.1) MUTATED DEL PEAK 26(16Q23.1) WILD-TYPE
  N0                           11                             72
  N1                            2                             43
  N2                            9                             23
                                vv
clus                              M0  M1 M1A  MX
  DEL PEAK 26(16Q23.1) MUTATED    17   4   0   2
  DEL PEAK 26(16Q23.1) WILD-TYPE 106  18   2  11
D51V6, multiclass
     clus
vv    DEL PEAK 26(16Q23.1) MUTATED DEL PEAK 26(16Q23.1) WILD-TYPE
  M0                            17                            106
  M1                             4                             18
  M1A                            0                              2
  MX                             2                             11
D51V7, binary
                                cls
clus                              0  1
  DEL PEAK 26(16Q23.1) MUTATED   11 12
  DEL PEAK 26(16Q23.1) WILD-TYPE 63 76
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 26(16Q23.1) MUTATED     11   12
  DEL PEAK 26(16Q23.1) WILD-TYPE   63   76
        clus
vv       DEL PEAK 26(16Q23.1) MUTATED DEL PEAK 26(16Q23.1) WILD-TYPE
  FEMALE                           11                             63
  MALE                             12                             76
D51V8, binary
                                cls
clus                               0   1
  DEL PEAK 26(16Q23.1) MUTATED    20   2
  DEL PEAK 26(16Q23.1) WILD-TYPE 123  11
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 26(16Q23.1) MUTATED     20    2
  DEL PEAK 26(16Q23.1) WILD-TYPE  123   11
                                clus
vv                               DEL PEAK 26(16Q23.1) MUTATED
  RECTAL ADENOCARCINOMA                                    20
  RECTAL MUCINOUS ADENOCARCINOMA                            2
                                clus
vv                               DEL PEAK 26(16Q23.1) WILD-TYPE
  RECTAL ADENOCARCINOMA                                     123
  RECTAL MUCINOUS ADENOCARCINOMA                             11
D51V9, binary
                                cls
clus                               0   1
  DEL PEAK 26(16Q23.1) MUTATED     1  22
  DEL PEAK 26(16Q23.1) WILD-TYPE   5 134
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 26(16Q23.1) MUTATED      1   22
  DEL PEAK 26(16Q23.1) WILD-TYPE    5  134
     clus
vv    DEL PEAK 26(16Q23.1) MUTATED DEL PEAK 26(16Q23.1) WILD-TYPE
  NO                             1                              5
  YES                           22                            134
                                vv
clus                              R0  R1  R2  RX
  DEL PEAK 26(16Q23.1) MUTATED    16   0   1   0
  DEL PEAK 26(16Q23.1) WILD-TYPE 105   2  11   3
D51V10, multiclass
    clus
vv   DEL PEAK 26(16Q23.1) MUTATED DEL PEAK 26(16Q23.1) WILD-TYPE
  R0                           16                            105
  R1                            0                              2
  R2                            1                             11
  RX                            0                              3
D51V11, continuous

Clustering(52) Variable = DEL PEAK 27(17P11.2) MUTATION ANALYSIS
D52V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 27(17P11.2) MUTATED   79  8
  DEL PEAK 27(17P11.2) WILD-TYPE 38  5
  DEL PEAK 27(17P11.2) MUTATED DEL PEAK 27(17P11.2) WILD-TYPE 
                            87                             43 
  DEL PEAK 27(17P11.2) MUTATED DEL PEAK 27(17P11.2) WILD-TYPE 
                             8                              5 
$`DEL PEAK 27(17P11.2) MUTATED`
TCGA-AF-2689 TCGA-AF-2690 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-2693 TCGA-AF-3400 
       17.95        17.23        10.62        13.55        19.10        12.72 
TCGA-AF-3911 TCGA-AF-4110 TCGA-AF-6136 TCGA-AF-6655 TCGA-AG-3575 TCGA-AG-3581 
       25.02        14.50        15.35        11.67        12.00         1.02 
TCGA-AG-3582 TCGA-AG-3586 TCGA-AG-3587 TCGA-AG-3605 TCGA-AG-3726 TCGA-AG-3727 
        1.02         1.02         1.02         0.99         7.96         0.95 
TCGA-AG-3731 TCGA-AG-3742 TCGA-AG-3883 TCGA-AG-3893 TCGA-AG-3896 TCGA-AG-3999 
        1.02         0.99         1.02         0.99         1.02         1.02 
TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H 
        1.02         1.02         1.02        13.91         6.02        25.94 
TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A01J TCGA-AG-A01L TCGA-AG-A01N 
       23.01        17.03        15.91         1.02        12.00        12.00 
TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A023 TCGA-AG-A026 TCGA-AG-A02X TCGA-AH-6544 
       70.03        63.98        51.98         1.94        40.96         0.49 
TCGA-AH-6643 TCGA-AH-6644 TCGA-AH-6897 TCGA-BM-6198 TCGA-CI-6619 TCGA-CI-6620 
        0.69         0.72         4.60        10.19         6.02         6.02 
TCGA-CI-6622 TCGA-CL-4957 TCGA-CL-5918 TCGA-DC-4749 TCGA-DC-6155 TCGA-DC-6156 
        6.94        13.97         7.99        11.01        14.01        15.02 
TCGA-DC-6158 TCGA-DC-6160 TCGA-DC-6682 TCGA-DC-6683 TCGA-DT-5265 TCGA-DY-A0XA 
        6.97        30.05        13.02        10.06         5.29       126.41 
TCGA-DY-A1DC TCGA-DY-A1DD TCGA-DY-A1DE TCGA-DY-A1DF TCGA-DY-A1DG TCGA-EF-5830 
       41.33        57.24       129.27        24.13        51.48         0.49 
TCGA-EF-5831 TCGA-EI-6508 TCGA-EI-6509 TCGA-EI-6510 TCGA-EI-6512 TCGA-EI-6513 
        2.40        20.91        17.00        18.28        17.69        16.34 
TCGA-EI-6514 TCGA-EI-6881 TCGA-EI-6883 TCGA-EI-6884 TCGA-EI-7002 TCGA-EI-7004 
       16.31        16.37        11.51        10.78        11.97         8.45 
TCGA-F5-6465 TCGA-F5-6571 TCGA-F5-6702 TCGA-F5-6810 TCGA-F5-6813 TCGA-F5-6814 
        3.39         0.85         2.17         0.39         0.69         0.53 
TCGA-F5-6863 TCGA-F5-6864 TCGA-G5-6235 
        0.76         0.46        55.76 

$`DEL PEAK 27(17P11.2) WILD-TYPE`
TCGA-AF-2687 TCGA-AF-3913 TCGA-AF-5654 TCGA-AF-6672 TCGA-AG-3583 TCGA-AG-3599 
       24.13        10.39         8.45        10.39         2.01         0.99 
TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3894 TCGA-AG-4022 TCGA-AG-A002 
        0.99         0.92         1.02         0.99         0.99        20.94 
TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A02G TCGA-AG-A02N 
       13.02         1.02        10.98        49.94        38.93        61.94 
TCGA-AG-A032 TCGA-AH-6547 TCGA-AH-6903 TCGA-CI-6623 TCGA-CI-6624 TCGA-CL-5917 
       38.01         1.45         1.81         9.37         4.70        60.00 
TCGA-DC-4745 TCGA-DC-5337 TCGA-DC-5869 TCGA-DC-6154 TCGA-DC-6157 TCGA-DC-6681 
       10.98        15.02        12.99        12.00        36.00        12.95 
TCGA-DY-A1H8 TCGA-EI-6506 TCGA-EI-6507 TCGA-EI-6511 TCGA-EI-6882 TCGA-EI-6885 
       32.58        20.55        19.96        15.85         8.61        13.61 
TCGA-EI-6917 TCGA-F5-6811 TCGA-F5-6812 TCGA-F5-6861 TCGA-G5-6233 TCGA-G5-6572 
       17.46         1.02         0.66         1.08        18.25        47.08 
TCGA-G5-6641 
       26.43 

  DEL PEAK 27(17P11.2) MUTATED DEL PEAK 27(17P11.2) WILD-TYPE 
                          0.39                           0.66 
  DEL PEAK 27(17P11.2) MUTATED DEL PEAK 27(17P11.2) WILD-TYPE 
                        129.27                          61.94 
  DEL PEAK 27(17P11.2) MUTATED DEL PEAK 27(17P11.2) WILD-TYPE 
                         10.78                          12.00 
[1] "0.4 - 129.3 (10.8)" "0.7 - 61.9 (12.0)" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK 27(17P11.2) WILD-TYPE"   "DEL PEAK 27(17P11.2) MUTATED" 
                    TCGA-AF-2690                     TCGA-AF-2691 
  "DEL PEAK 27(17P11.2) MUTATED"   "DEL PEAK 27(17P11.2) MUTATED" 
                    TCGA-AF-2692                     TCGA-AF-2693 
  "DEL PEAK 27(17P11.2) MUTATED"   "DEL PEAK 27(17P11.2) MUTATED" 
                    TCGA-AF-3400                     TCGA-AF-3911 
  "DEL PEAK 27(17P11.2) MUTATED"   "DEL PEAK 27(17P11.2) MUTATED" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 27(17P11.2) WILD-TYPE"   "DEL PEAK 27(17P11.2) MUTATED" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 27(17P11.2) WILD-TYPE"   "DEL PEAK 27(17P11.2) MUTATED" 
                    TCGA-AF-6655                     TCGA-AF-6672 
  "DEL PEAK 27(17P11.2) MUTATED" "DEL PEAK 27(17P11.2) WILD-TYPE" 
                    TCGA-AG-3575                     TCGA-AG-3581 
  "DEL PEAK 27(17P11.2) MUTATED"   "DEL PEAK 27(17P11.2) MUTATED" 
                    TCGA-AG-3582                     TCGA-AG-3583 
  "DEL PEAK 27(17P11.2) MUTATED" "DEL PEAK 27(17P11.2) WILD-TYPE" 
                    TCGA-AG-3586                     TCGA-AG-3587 
  "DEL PEAK 27(17P11.2) MUTATED"   "DEL PEAK 27(17P11.2) MUTATED" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"DEL PEAK 27(17P11.2) WILD-TYPE"   "DEL PEAK 27(17P11.2) MUTATED" 
                    TCGA-AG-3726                     TCGA-AG-3727 
  "DEL PEAK 27(17P11.2) MUTATED"   "DEL PEAK 27(17P11.2) MUTATED" 
                    TCGA-AG-3731                     TCGA-AG-3742 
  "DEL PEAK 27(17P11.2) MUTATED"   "DEL PEAK 27(17P11.2) MUTATED" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"DEL PEAK 27(17P11.2) WILD-TYPE"   "DEL PEAK 27(17P11.2) MUTATED" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 27(17P11.2) WILD-TYPE" "DEL PEAK 27(17P11.2) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
  "DEL PEAK 27(17P11.2) MUTATED" "DEL PEAK 27(17P11.2) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
  "DEL PEAK 27(17P11.2) MUTATED"   "DEL PEAK 27(17P11.2) MUTATED" 
                    TCGA-AG-4001                     TCGA-AG-4007 
  "DEL PEAK 27(17P11.2) MUTATED"   "DEL PEAK 27(17P11.2) MUTATED" 
                    TCGA-AG-4008                     TCGA-AG-4022 
  "DEL PEAK 27(17P11.2) MUTATED" "DEL PEAK 27(17P11.2) WILD-TYPE" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"DEL PEAK 27(17P11.2) WILD-TYPE"   "DEL PEAK 27(17P11.2) MUTATED" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
  "DEL PEAK 27(17P11.2) MUTATED"   "DEL PEAK 27(17P11.2) MUTATED" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
  "DEL PEAK 27(17P11.2) MUTATED"   "DEL PEAK 27(17P11.2) MUTATED" 
                    TCGA-AG-A014                     TCGA-AG-A015 
  "DEL PEAK 27(17P11.2) MUTATED" "DEL PEAK 27(17P11.2) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
"DEL PEAK 27(17P11.2) WILD-TYPE"   "DEL PEAK 27(17P11.2) MUTATED" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
  "DEL PEAK 27(17P11.2) MUTATED"   "DEL PEAK 27(17P11.2) MUTATED" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
  "DEL PEAK 27(17P11.2) MUTATED"   "DEL PEAK 27(17P11.2) MUTATED" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"DEL PEAK 27(17P11.2) WILD-TYPE"   "DEL PEAK 27(17P11.2) MUTATED" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"DEL PEAK 27(17P11.2) WILD-TYPE"   "DEL PEAK 27(17P11.2) MUTATED" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
"DEL PEAK 27(17P11.2) WILD-TYPE" "DEL PEAK 27(17P11.2) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
  "DEL PEAK 27(17P11.2) MUTATED" "DEL PEAK 27(17P11.2) WILD-TYPE" 
                    TCGA-AH-6544                     TCGA-AH-6547 
  "DEL PEAK 27(17P11.2) MUTATED" "DEL PEAK 27(17P11.2) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
  "DEL PEAK 27(17P11.2) MUTATED"   "DEL PEAK 27(17P11.2) MUTATED" 
                    TCGA-AH-6897                     TCGA-AH-6903 
  "DEL PEAK 27(17P11.2) MUTATED" "DEL PEAK 27(17P11.2) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
  "DEL PEAK 27(17P11.2) MUTATED"   "DEL PEAK 27(17P11.2) MUTATED" 
                    TCGA-CI-6620                     TCGA-CI-6622 
  "DEL PEAK 27(17P11.2) MUTATED"   "DEL PEAK 27(17P11.2) MUTATED" 
                    TCGA-CI-6623                     TCGA-CI-6624 
"DEL PEAK 27(17P11.2) WILD-TYPE" "DEL PEAK 27(17P11.2) WILD-TYPE" 
                    TCGA-CL-4957                     TCGA-CL-5917 
  "DEL PEAK 27(17P11.2) MUTATED" "DEL PEAK 27(17P11.2) WILD-TYPE" 
                    TCGA-CL-5918                     TCGA-DC-4745 
  "DEL PEAK 27(17P11.2) MUTATED" "DEL PEAK 27(17P11.2) WILD-TYPE" 
                    TCGA-DC-4749                     TCGA-DC-5337 
  "DEL PEAK 27(17P11.2) MUTATED" "DEL PEAK 27(17P11.2) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
"DEL PEAK 27(17P11.2) WILD-TYPE" "DEL PEAK 27(17P11.2) WILD-TYPE" 
                    TCGA-DC-6155                     TCGA-DC-6156 
  "DEL PEAK 27(17P11.2) MUTATED"   "DEL PEAK 27(17P11.2) MUTATED" 
                    TCGA-DC-6157                     TCGA-DC-6158 
"DEL PEAK 27(17P11.2) WILD-TYPE"   "DEL PEAK 27(17P11.2) MUTATED" 
                    TCGA-DC-6160                     TCGA-DC-6681 
  "DEL PEAK 27(17P11.2) MUTATED" "DEL PEAK 27(17P11.2) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
  "DEL PEAK 27(17P11.2) MUTATED"   "DEL PEAK 27(17P11.2) MUTATED" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
  "DEL PEAK 27(17P11.2) MUTATED"   "DEL PEAK 27(17P11.2) MUTATED" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
  "DEL PEAK 27(17P11.2) MUTATED"   "DEL PEAK 27(17P11.2) MUTATED" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
  "DEL PEAK 27(17P11.2) MUTATED"   "DEL PEAK 27(17P11.2) MUTATED" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
  "DEL PEAK 27(17P11.2) MUTATED" "DEL PEAK 27(17P11.2) WILD-TYPE" 
                    TCGA-EF-5830                     TCGA-EF-5831 
  "DEL PEAK 27(17P11.2) MUTATED"   "DEL PEAK 27(17P11.2) MUTATED" 
                    TCGA-EI-6506                     TCGA-EI-6507 
"DEL PEAK 27(17P11.2) WILD-TYPE" "DEL PEAK 27(17P11.2) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
  "DEL PEAK 27(17P11.2) MUTATED"   "DEL PEAK 27(17P11.2) MUTATED" 
                    TCGA-EI-6510                     TCGA-EI-6511 
  "DEL PEAK 27(17P11.2) MUTATED" "DEL PEAK 27(17P11.2) WILD-TYPE" 
                    TCGA-EI-6512                     TCGA-EI-6513 
  "DEL PEAK 27(17P11.2) MUTATED"   "DEL PEAK 27(17P11.2) MUTATED" 
                    TCGA-EI-6514                     TCGA-EI-6881 
  "DEL PEAK 27(17P11.2) MUTATED"   "DEL PEAK 27(17P11.2) MUTATED" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"DEL PEAK 27(17P11.2) WILD-TYPE"   "DEL PEAK 27(17P11.2) MUTATED" 
                    TCGA-EI-6884                     TCGA-EI-6885 
  "DEL PEAK 27(17P11.2) MUTATED" "DEL PEAK 27(17P11.2) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"DEL PEAK 27(17P11.2) WILD-TYPE"   "DEL PEAK 27(17P11.2) MUTATED" 
                    TCGA-EI-7004                     TCGA-F5-6465 
  "DEL PEAK 27(17P11.2) MUTATED"   "DEL PEAK 27(17P11.2) MUTATED" 
                    TCGA-F5-6571                     TCGA-F5-6702 
  "DEL PEAK 27(17P11.2) MUTATED"   "DEL PEAK 27(17P11.2) MUTATED" 
                    TCGA-F5-6810                     TCGA-F5-6811 
  "DEL PEAK 27(17P11.2) MUTATED" "DEL PEAK 27(17P11.2) WILD-TYPE" 
                    TCGA-F5-6812                     TCGA-F5-6813 
"DEL PEAK 27(17P11.2) WILD-TYPE"   "DEL PEAK 27(17P11.2) MUTATED" 
                    TCGA-F5-6814                     TCGA-F5-6861 
  "DEL PEAK 27(17P11.2) MUTATED" "DEL PEAK 27(17P11.2) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
  "DEL PEAK 27(17P11.2) MUTATED"   "DEL PEAK 27(17P11.2) MUTATED" 
                    TCGA-G5-6233                     TCGA-G5-6235 
"DEL PEAK 27(17P11.2) WILD-TYPE"   "DEL PEAK 27(17P11.2) MUTATED" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"DEL PEAK 27(17P11.2) WILD-TYPE" "DEL PEAK 27(17P11.2) WILD-TYPE" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK 27(17P11.2) WILD-TYPE"   "DEL PEAK 27(17P11.2) MUTATED" 
                    TCGA-AF-2690                     TCGA-AF-2691 
  "DEL PEAK 27(17P11.2) MUTATED"   "DEL PEAK 27(17P11.2) MUTATED" 
                    TCGA-AF-2692                     TCGA-AF-2693 
  "DEL PEAK 27(17P11.2) MUTATED"   "DEL PEAK 27(17P11.2) MUTATED" 
                    TCGA-AF-3400                     TCGA-AF-3911 
  "DEL PEAK 27(17P11.2) MUTATED"   "DEL PEAK 27(17P11.2) MUTATED" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 27(17P11.2) WILD-TYPE"   "DEL PEAK 27(17P11.2) MUTATED" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 27(17P11.2) WILD-TYPE"   "DEL PEAK 27(17P11.2) MUTATED" 
                    TCGA-AF-6655                     TCGA-AF-6672 
  "DEL PEAK 27(17P11.2) MUTATED" "DEL PEAK 27(17P11.2) WILD-TYPE" 
                    TCGA-AG-3575                     TCGA-AG-3581 
  "DEL PEAK 27(17P11.2) MUTATED"   "DEL PEAK 27(17P11.2) MUTATED" 
                    TCGA-AG-3582                     TCGA-AG-3583 
  "DEL PEAK 27(17P11.2) MUTATED" "DEL PEAK 27(17P11.2) WILD-TYPE" 
                    TCGA-AG-3586                     TCGA-AG-3587 
  "DEL PEAK 27(17P11.2) MUTATED"   "DEL PEAK 27(17P11.2) MUTATED" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"DEL PEAK 27(17P11.2) WILD-TYPE"   "DEL PEAK 27(17P11.2) MUTATED" 
                    TCGA-AG-3726                     TCGA-AG-3727 
  "DEL PEAK 27(17P11.2) MUTATED"   "DEL PEAK 27(17P11.2) MUTATED" 
                    TCGA-AG-3731                     TCGA-AG-3742 
  "DEL PEAK 27(17P11.2) MUTATED"   "DEL PEAK 27(17P11.2) MUTATED" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"DEL PEAK 27(17P11.2) WILD-TYPE"   "DEL PEAK 27(17P11.2) MUTATED" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 27(17P11.2) WILD-TYPE" "DEL PEAK 27(17P11.2) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
  "DEL PEAK 27(17P11.2) MUTATED" "DEL PEAK 27(17P11.2) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
  "DEL PEAK 27(17P11.2) MUTATED"   "DEL PEAK 27(17P11.2) MUTATED" 
                    TCGA-AG-4001                     TCGA-AG-4007 
  "DEL PEAK 27(17P11.2) MUTATED"   "DEL PEAK 27(17P11.2) MUTATED" 
                    TCGA-AG-4008                     TCGA-AG-4022 
  "DEL PEAK 27(17P11.2) MUTATED" "DEL PEAK 27(17P11.2) WILD-TYPE" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"DEL PEAK 27(17P11.2) WILD-TYPE"   "DEL PEAK 27(17P11.2) MUTATED" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
  "DEL PEAK 27(17P11.2) MUTATED"   "DEL PEAK 27(17P11.2) MUTATED" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
  "DEL PEAK 27(17P11.2) MUTATED"   "DEL PEAK 27(17P11.2) MUTATED" 
                    TCGA-AG-A014                     TCGA-AG-A015 
  "DEL PEAK 27(17P11.2) MUTATED" "DEL PEAK 27(17P11.2) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
"DEL PEAK 27(17P11.2) WILD-TYPE"   "DEL PEAK 27(17P11.2) MUTATED" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
  "DEL PEAK 27(17P11.2) MUTATED"   "DEL PEAK 27(17P11.2) MUTATED" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
  "DEL PEAK 27(17P11.2) MUTATED"   "DEL PEAK 27(17P11.2) MUTATED" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"DEL PEAK 27(17P11.2) WILD-TYPE"   "DEL PEAK 27(17P11.2) MUTATED" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"DEL PEAK 27(17P11.2) WILD-TYPE"   "DEL PEAK 27(17P11.2) MUTATED" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
"DEL PEAK 27(17P11.2) WILD-TYPE" "DEL PEAK 27(17P11.2) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
  "DEL PEAK 27(17P11.2) MUTATED" "DEL PEAK 27(17P11.2) WILD-TYPE" 
                    TCGA-AH-6544                     TCGA-AH-6547 
  "DEL PEAK 27(17P11.2) MUTATED" "DEL PEAK 27(17P11.2) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
  "DEL PEAK 27(17P11.2) MUTATED"   "DEL PEAK 27(17P11.2) MUTATED" 
                    TCGA-AH-6897                     TCGA-AH-6903 
  "DEL PEAK 27(17P11.2) MUTATED" "DEL PEAK 27(17P11.2) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
  "DEL PEAK 27(17P11.2) MUTATED"   "DEL PEAK 27(17P11.2) MUTATED" 
                    TCGA-CI-6620                     TCGA-CI-6622 
  "DEL PEAK 27(17P11.2) MUTATED"   "DEL PEAK 27(17P11.2) MUTATED" 
                    TCGA-CI-6623                     TCGA-CI-6624 
"DEL PEAK 27(17P11.2) WILD-TYPE" "DEL PEAK 27(17P11.2) WILD-TYPE" 
                    TCGA-CL-4957                     TCGA-CL-5917 
  "DEL PEAK 27(17P11.2) MUTATED" "DEL PEAK 27(17P11.2) WILD-TYPE" 
                    TCGA-CL-5918                     TCGA-DC-4745 
  "DEL PEAK 27(17P11.2) MUTATED" "DEL PEAK 27(17P11.2) WILD-TYPE" 
                    TCGA-DC-4749                     TCGA-DC-5337 
  "DEL PEAK 27(17P11.2) MUTATED" "DEL PEAK 27(17P11.2) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
"DEL PEAK 27(17P11.2) WILD-TYPE" "DEL PEAK 27(17P11.2) WILD-TYPE" 
                    TCGA-DC-6155                     TCGA-DC-6156 
  "DEL PEAK 27(17P11.2) MUTATED"   "DEL PEAK 27(17P11.2) MUTATED" 
                    TCGA-DC-6157                     TCGA-DC-6158 
"DEL PEAK 27(17P11.2) WILD-TYPE"   "DEL PEAK 27(17P11.2) MUTATED" 
                    TCGA-DC-6160                     TCGA-DC-6681 
  "DEL PEAK 27(17P11.2) MUTATED" "DEL PEAK 27(17P11.2) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
  "DEL PEAK 27(17P11.2) MUTATED"   "DEL PEAK 27(17P11.2) MUTATED" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
  "DEL PEAK 27(17P11.2) MUTATED"   "DEL PEAK 27(17P11.2) MUTATED" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
  "DEL PEAK 27(17P11.2) MUTATED"   "DEL PEAK 27(17P11.2) MUTATED" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
  "DEL PEAK 27(17P11.2) MUTATED"   "DEL PEAK 27(17P11.2) MUTATED" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
  "DEL PEAK 27(17P11.2) MUTATED" "DEL PEAK 27(17P11.2) WILD-TYPE" 
                    TCGA-EF-5830                     TCGA-EF-5831 
  "DEL PEAK 27(17P11.2) MUTATED"   "DEL PEAK 27(17P11.2) MUTATED" 
                    TCGA-EI-6506                     TCGA-EI-6507 
"DEL PEAK 27(17P11.2) WILD-TYPE" "DEL PEAK 27(17P11.2) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
  "DEL PEAK 27(17P11.2) MUTATED"   "DEL PEAK 27(17P11.2) MUTATED" 
                    TCGA-EI-6510                     TCGA-EI-6511 
  "DEL PEAK 27(17P11.2) MUTATED" "DEL PEAK 27(17P11.2) WILD-TYPE" 
                    TCGA-EI-6512                     TCGA-EI-6513 
  "DEL PEAK 27(17P11.2) MUTATED"   "DEL PEAK 27(17P11.2) MUTATED" 
                    TCGA-EI-6514                     TCGA-EI-6881 
  "DEL PEAK 27(17P11.2) MUTATED"   "DEL PEAK 27(17P11.2) MUTATED" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"DEL PEAK 27(17P11.2) WILD-TYPE"   "DEL PEAK 27(17P11.2) MUTATED" 
                    TCGA-EI-6884                     TCGA-EI-6885 
  "DEL PEAK 27(17P11.2) MUTATED" "DEL PEAK 27(17P11.2) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"DEL PEAK 27(17P11.2) WILD-TYPE"   "DEL PEAK 27(17P11.2) MUTATED" 
                    TCGA-EI-7004                     TCGA-F5-6465 
  "DEL PEAK 27(17P11.2) MUTATED"   "DEL PEAK 27(17P11.2) MUTATED" 
                    TCGA-F5-6571                     TCGA-F5-6702 
  "DEL PEAK 27(17P11.2) MUTATED"   "DEL PEAK 27(17P11.2) MUTATED" 
                    TCGA-F5-6810                     TCGA-F5-6811 
  "DEL PEAK 27(17P11.2) MUTATED" "DEL PEAK 27(17P11.2) WILD-TYPE" 
                    TCGA-F5-6812                     TCGA-F5-6813 
"DEL PEAK 27(17P11.2) WILD-TYPE"   "DEL PEAK 27(17P11.2) MUTATED" 
                    TCGA-F5-6814                     TCGA-F5-6861 
  "DEL PEAK 27(17P11.2) MUTATED" "DEL PEAK 27(17P11.2) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
  "DEL PEAK 27(17P11.2) MUTATED"   "DEL PEAK 27(17P11.2) MUTATED" 
                    TCGA-G5-6233                     TCGA-G5-6235 
"DEL PEAK 27(17P11.2) WILD-TYPE"   "DEL PEAK 27(17P11.2) MUTATED" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"DEL PEAK 27(17P11.2) WILD-TYPE" "DEL PEAK 27(17P11.2) WILD-TYPE" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK 27(17P11.2) WILD-TYPE"   "DEL PEAK 27(17P11.2) MUTATED" 
                    TCGA-AF-2690                     TCGA-AF-2691 
  "DEL PEAK 27(17P11.2) MUTATED"   "DEL PEAK 27(17P11.2) MUTATED" 
                    TCGA-AF-2692                     TCGA-AF-2693 
  "DEL PEAK 27(17P11.2) MUTATED"   "DEL PEAK 27(17P11.2) MUTATED" 
                    TCGA-AF-3400                     TCGA-AF-3911 
  "DEL PEAK 27(17P11.2) MUTATED"   "DEL PEAK 27(17P11.2) MUTATED" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 27(17P11.2) WILD-TYPE"   "DEL PEAK 27(17P11.2) MUTATED" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 27(17P11.2) WILD-TYPE"   "DEL PEAK 27(17P11.2) MUTATED" 
                    TCGA-AF-6655                     TCGA-AF-6672 
  "DEL PEAK 27(17P11.2) MUTATED" "DEL PEAK 27(17P11.2) WILD-TYPE" 
                    TCGA-AG-3575                     TCGA-AG-3581 
  "DEL PEAK 27(17P11.2) MUTATED"   "DEL PEAK 27(17P11.2) MUTATED" 
                    TCGA-AG-3582                     TCGA-AG-3583 
  "DEL PEAK 27(17P11.2) MUTATED" "DEL PEAK 27(17P11.2) WILD-TYPE" 
                    TCGA-AG-3586                     TCGA-AG-3587 
  "DEL PEAK 27(17P11.2) MUTATED"   "DEL PEAK 27(17P11.2) MUTATED" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"DEL PEAK 27(17P11.2) WILD-TYPE"   "DEL PEAK 27(17P11.2) MUTATED" 
                    TCGA-AG-3726                     TCGA-AG-3727 
  "DEL PEAK 27(17P11.2) MUTATED"   "DEL PEAK 27(17P11.2) MUTATED" 
                    TCGA-AG-3731                     TCGA-AG-3742 
  "DEL PEAK 27(17P11.2) MUTATED"   "DEL PEAK 27(17P11.2) MUTATED" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"DEL PEAK 27(17P11.2) WILD-TYPE"   "DEL PEAK 27(17P11.2) MUTATED" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 27(17P11.2) WILD-TYPE" "DEL PEAK 27(17P11.2) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
  "DEL PEAK 27(17P11.2) MUTATED" "DEL PEAK 27(17P11.2) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
  "DEL PEAK 27(17P11.2) MUTATED"   "DEL PEAK 27(17P11.2) MUTATED" 
                    TCGA-AG-4001                     TCGA-AG-4007 
  "DEL PEAK 27(17P11.2) MUTATED"   "DEL PEAK 27(17P11.2) MUTATED" 
                    TCGA-AG-4008                     TCGA-AG-4022 
  "DEL PEAK 27(17P11.2) MUTATED" "DEL PEAK 27(17P11.2) WILD-TYPE" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"DEL PEAK 27(17P11.2) WILD-TYPE"   "DEL PEAK 27(17P11.2) MUTATED" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
  "DEL PEAK 27(17P11.2) MUTATED"   "DEL PEAK 27(17P11.2) MUTATED" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
  "DEL PEAK 27(17P11.2) MUTATED"   "DEL PEAK 27(17P11.2) MUTATED" 
                    TCGA-AG-A014                     TCGA-AG-A015 
  "DEL PEAK 27(17P11.2) MUTATED" "DEL PEAK 27(17P11.2) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
"DEL PEAK 27(17P11.2) WILD-TYPE"   "DEL PEAK 27(17P11.2) MUTATED" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
  "DEL PEAK 27(17P11.2) MUTATED"   "DEL PEAK 27(17P11.2) MUTATED" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
  "DEL PEAK 27(17P11.2) MUTATED"   "DEL PEAK 27(17P11.2) MUTATED" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"DEL PEAK 27(17P11.2) WILD-TYPE"   "DEL PEAK 27(17P11.2) MUTATED" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"DEL PEAK 27(17P11.2) WILD-TYPE"   "DEL PEAK 27(17P11.2) MUTATED" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
"DEL PEAK 27(17P11.2) WILD-TYPE" "DEL PEAK 27(17P11.2) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
  "DEL PEAK 27(17P11.2) MUTATED" "DEL PEAK 27(17P11.2) WILD-TYPE" 
                    TCGA-AH-6544                     TCGA-AH-6547 
  "DEL PEAK 27(17P11.2) MUTATED" "DEL PEAK 27(17P11.2) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
  "DEL PEAK 27(17P11.2) MUTATED"   "DEL PEAK 27(17P11.2) MUTATED" 
                    TCGA-AH-6897                     TCGA-AH-6903 
  "DEL PEAK 27(17P11.2) MUTATED" "DEL PEAK 27(17P11.2) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
  "DEL PEAK 27(17P11.2) MUTATED"   "DEL PEAK 27(17P11.2) MUTATED" 
                    TCGA-CI-6620                     TCGA-CI-6622 
  "DEL PEAK 27(17P11.2) MUTATED"   "DEL PEAK 27(17P11.2) MUTATED" 
                    TCGA-CI-6623                     TCGA-CI-6624 
"DEL PEAK 27(17P11.2) WILD-TYPE" "DEL PEAK 27(17P11.2) WILD-TYPE" 
                    TCGA-CL-4957                     TCGA-CL-5917 
  "DEL PEAK 27(17P11.2) MUTATED" "DEL PEAK 27(17P11.2) WILD-TYPE" 
                    TCGA-CL-5918                     TCGA-DC-4745 
  "DEL PEAK 27(17P11.2) MUTATED" "DEL PEAK 27(17P11.2) WILD-TYPE" 
                    TCGA-DC-4749                     TCGA-DC-5337 
  "DEL PEAK 27(17P11.2) MUTATED" "DEL PEAK 27(17P11.2) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
"DEL PEAK 27(17P11.2) WILD-TYPE" "DEL PEAK 27(17P11.2) WILD-TYPE" 
                    TCGA-DC-6155                     TCGA-DC-6156 
  "DEL PEAK 27(17P11.2) MUTATED"   "DEL PEAK 27(17P11.2) MUTATED" 
                    TCGA-DC-6157                     TCGA-DC-6158 
"DEL PEAK 27(17P11.2) WILD-TYPE"   "DEL PEAK 27(17P11.2) MUTATED" 
                    TCGA-DC-6160                     TCGA-DC-6681 
  "DEL PEAK 27(17P11.2) MUTATED" "DEL PEAK 27(17P11.2) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
  "DEL PEAK 27(17P11.2) MUTATED"   "DEL PEAK 27(17P11.2) MUTATED" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
  "DEL PEAK 27(17P11.2) MUTATED"   "DEL PEAK 27(17P11.2) MUTATED" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
  "DEL PEAK 27(17P11.2) MUTATED"   "DEL PEAK 27(17P11.2) MUTATED" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
  "DEL PEAK 27(17P11.2) MUTATED"   "DEL PEAK 27(17P11.2) MUTATED" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
  "DEL PEAK 27(17P11.2) MUTATED" "DEL PEAK 27(17P11.2) WILD-TYPE" 
                    TCGA-EF-5830                     TCGA-EF-5831 
  "DEL PEAK 27(17P11.2) MUTATED"   "DEL PEAK 27(17P11.2) MUTATED" 
                    TCGA-EI-6506                     TCGA-EI-6507 
"DEL PEAK 27(17P11.2) WILD-TYPE" "DEL PEAK 27(17P11.2) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
  "DEL PEAK 27(17P11.2) MUTATED"   "DEL PEAK 27(17P11.2) MUTATED" 
                    TCGA-EI-6510                     TCGA-EI-6511 
  "DEL PEAK 27(17P11.2) MUTATED" "DEL PEAK 27(17P11.2) WILD-TYPE" 
                    TCGA-EI-6512                     TCGA-EI-6513 
  "DEL PEAK 27(17P11.2) MUTATED"   "DEL PEAK 27(17P11.2) MUTATED" 
                    TCGA-EI-6514                     TCGA-EI-6881 
  "DEL PEAK 27(17P11.2) MUTATED"   "DEL PEAK 27(17P11.2) MUTATED" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"DEL PEAK 27(17P11.2) WILD-TYPE"   "DEL PEAK 27(17P11.2) MUTATED" 
                    TCGA-EI-6884                     TCGA-EI-6885 
  "DEL PEAK 27(17P11.2) MUTATED" "DEL PEAK 27(17P11.2) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"DEL PEAK 27(17P11.2) WILD-TYPE"   "DEL PEAK 27(17P11.2) MUTATED" 
                    TCGA-EI-7004                     TCGA-F5-6465 
  "DEL PEAK 27(17P11.2) MUTATED"   "DEL PEAK 27(17P11.2) MUTATED" 
                    TCGA-F5-6571                     TCGA-F5-6702 
  "DEL PEAK 27(17P11.2) MUTATED"   "DEL PEAK 27(17P11.2) MUTATED" 
                    TCGA-F5-6810                     TCGA-F5-6811 
  "DEL PEAK 27(17P11.2) MUTATED" "DEL PEAK 27(17P11.2) WILD-TYPE" 
                    TCGA-F5-6812                     TCGA-F5-6813 
"DEL PEAK 27(17P11.2) WILD-TYPE"   "DEL PEAK 27(17P11.2) MUTATED" 
                    TCGA-F5-6814                     TCGA-F5-6861 
  "DEL PEAK 27(17P11.2) MUTATED" "DEL PEAK 27(17P11.2) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
  "DEL PEAK 27(17P11.2) MUTATED"   "DEL PEAK 27(17P11.2) MUTATED" 
                    TCGA-G5-6233                     TCGA-G5-6235 
"DEL PEAK 27(17P11.2) WILD-TYPE"   "DEL PEAK 27(17P11.2) MUTATED" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"DEL PEAK 27(17P11.2) WILD-TYPE" "DEL PEAK 27(17P11.2) WILD-TYPE" 
[1] "hr=" "1.2"
D52V2, continuous
                                vv
clus                             STAGE I STAGE II STAGE IIA STAGE IIB STAGE IIC
  DEL PEAK 27(17P11.2) MUTATED        17        5        29         2         1
  DEL PEAK 27(17P11.2) WILD-TYPE      13        3         9         0         1
                                vv
clus                             STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  DEL PEAK 27(17P11.2) MUTATED           4          5         15         11
  DEL PEAK 27(17P11.2) WILD-TYPE         1          4          8          3
                                vv
clus                             STAGE IV STAGE IVA
  DEL PEAK 27(17P11.2) MUTATED         12         7
  DEL PEAK 27(17P11.2) WILD-TYPE        5         2
D52V3, multiclass
                                vv
clus                             T1 T2 T3 T4
  DEL PEAK 27(17P11.2) MUTATED    2 20 76 12
  DEL PEAK 27(17P11.2) WILD-TYPE  7  9 33  2
D52V4, multiclass
    clus
vv   DEL PEAK 27(17P11.2) MUTATED DEL PEAK 27(17P11.2) WILD-TYPE
  T1                            2                              7
  T2                           20                              9
  T3                           76                             33
  T4                           12                              2
                                vv
clus                             N0 N1 N2
  DEL PEAK 27(17P11.2) MUTATED   56 30 23
  DEL PEAK 27(17P11.2) WILD-TYPE 27 15  9
D52V5, multiclass
    clus
vv   DEL PEAK 27(17P11.2) MUTATED DEL PEAK 27(17P11.2) WILD-TYPE
  N0                           56                             27
  N1                           30                             15
  N2                           23                              9
                                vv
clus                             M0 M1 M1A MX
  DEL PEAK 27(17P11.2) MUTATED   83 16   1  9
  DEL PEAK 27(17P11.2) WILD-TYPE 40  6   1  4
D52V6, multiclass
     clus
vv    DEL PEAK 27(17P11.2) MUTATED DEL PEAK 27(17P11.2) WILD-TYPE
  M0                            83                             40
  M1                            16                              6
  M1A                            1                              1
  MX                             9                              4
D52V7, binary
                                cls
clus                              0  1
  DEL PEAK 27(17P11.2) MUTATED   52 58
  DEL PEAK 27(17P11.2) WILD-TYPE 22 30
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 27(17P11.2) MUTATED     52   58
  DEL PEAK 27(17P11.2) WILD-TYPE   22   30
        clus
vv       DEL PEAK 27(17P11.2) MUTATED DEL PEAK 27(17P11.2) WILD-TYPE
  FEMALE                           52                             22
  MALE                             58                             30
D52V8, binary
                                cls
clus                              0  1
  DEL PEAK 27(17P11.2) MUTATED   99  6
  DEL PEAK 27(17P11.2) WILD-TYPE 44  7
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 27(17P11.2) MUTATED     99    6
  DEL PEAK 27(17P11.2) WILD-TYPE   44    7
                                clus
vv                               DEL PEAK 27(17P11.2) MUTATED
  RECTAL ADENOCARCINOMA                                    99
  RECTAL MUCINOUS ADENOCARCINOMA                            6
                                clus
vv                               DEL PEAK 27(17P11.2) WILD-TYPE
  RECTAL ADENOCARCINOMA                                      44
  RECTAL MUCINOUS ADENOCARCINOMA                              7
D52V9, binary
                                cls
clus                               0   1
  DEL PEAK 27(17P11.2) MUTATED     4 106
  DEL PEAK 27(17P11.2) WILD-TYPE   2  50
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 27(17P11.2) MUTATED      4  106
  DEL PEAK 27(17P11.2) WILD-TYPE    2   50
     clus
vv    DEL PEAK 27(17P11.2) MUTATED DEL PEAK 27(17P11.2) WILD-TYPE
  NO                             4                              2
  YES                          106                             50
                                vv
clus                             R0 R1 R2 RX
  DEL PEAK 27(17P11.2) MUTATED   80  2  9  2
  DEL PEAK 27(17P11.2) WILD-TYPE 41  0  3  1
D52V10, multiclass
    clus
vv   DEL PEAK 27(17P11.2) MUTATED DEL PEAK 27(17P11.2) WILD-TYPE
  R0                           80                             41
  R1                            2                              0
  R2                            9                              3
  RX                            2                              1
D52V11, continuous

Clustering(53) Variable = DEL PEAK 28(18Q21.2) MUTATION ANALYSIS
D53V1, survival
                                sevent
clus2                              0   1
  DEL PEAK 28(18Q21.2) MUTATED   102  12
  DEL PEAK 28(18Q21.2) WILD-TYPE  15   1
  DEL PEAK 28(18Q21.2) MUTATED DEL PEAK 28(18Q21.2) WILD-TYPE 
                           114                             16 
  DEL PEAK 28(18Q21.2) MUTATED DEL PEAK 28(18Q21.2) WILD-TYPE 
                            12                              1 
$`DEL PEAK 28(18Q21.2) MUTATED`
TCGA-AF-2687 TCGA-AF-2689 TCGA-AF-2690 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-2693 
       24.13        17.95        17.23        10.62        13.55        19.10 
TCGA-AF-3400 TCGA-AF-3911 TCGA-AF-3913 TCGA-AF-4110 TCGA-AF-6136 TCGA-AF-6655 
       12.72        25.02        10.39        14.50        15.35        11.67 
TCGA-AF-6672 TCGA-AG-3575 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3586 
       10.39        12.00         1.02         1.02         2.01         1.02 
TCGA-AG-3587 TCGA-AG-3605 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3731 TCGA-AG-3742 
        1.02         0.99         7.96         0.95         1.02         0.99 
TCGA-AG-3883 TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3896 TCGA-AG-3999 TCGA-AG-4001 
        1.02         0.92         0.99         1.02         1.02         1.02 
TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-4022 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H 
        1.02         1.02         0.99        13.91         6.02        25.94 
TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A016 TCGA-AG-A01J TCGA-AG-A01L 
       23.01        17.03        15.91         1.02         1.02        12.00 
TCGA-AG-A01N TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A023 TCGA-AG-A026 
       12.00        70.03        63.98        10.98        51.98         1.94 
TCGA-AG-A02G TCGA-AG-A02X TCGA-AG-A032 TCGA-AH-6544 TCGA-AH-6643 TCGA-AH-6644 
       38.93        40.96        38.01         0.49         0.69         0.72 
TCGA-AH-6897 TCGA-AH-6903 TCGA-BM-6198 TCGA-CI-6619 TCGA-CI-6620 TCGA-CI-6622 
        4.60         1.81        10.19         6.02         6.02         6.94 
TCGA-CI-6623 TCGA-CI-6624 TCGA-CL-4957 TCGA-CL-5917 TCGA-CL-5918 TCGA-DC-4745 
        9.37         4.70        13.97        60.00         7.99        10.98 
TCGA-DC-4749 TCGA-DC-5337 TCGA-DC-5869 TCGA-DC-6154 TCGA-DC-6155 TCGA-DC-6156 
       11.01        15.02        12.99        12.00        14.01        15.02 
TCGA-DC-6157 TCGA-DC-6158 TCGA-DC-6160 TCGA-DC-6681 TCGA-DC-6682 TCGA-DC-6683 
       36.00         6.97        30.05        12.95        13.02        10.06 
TCGA-DT-5265 TCGA-DY-A0XA TCGA-DY-A1DC TCGA-DY-A1DD TCGA-DY-A1DE TCGA-DY-A1DF 
        5.29       126.41        41.33        57.24       129.27        24.13 
TCGA-DY-A1DG TCGA-EF-5830 TCGA-EF-5831 TCGA-EI-6506 TCGA-EI-6508 TCGA-EI-6509 
       51.48         0.49         2.40        20.55        20.91        17.00 
TCGA-EI-6510 TCGA-EI-6511 TCGA-EI-6512 TCGA-EI-6513 TCGA-EI-6514 TCGA-EI-6881 
       18.28        15.85        17.69        16.34        16.31        16.37 
TCGA-EI-6883 TCGA-EI-6884 TCGA-EI-6885 TCGA-EI-7002 TCGA-EI-7004 TCGA-F5-6465 
       11.51        10.78        13.61        11.97         8.45         3.39 
TCGA-F5-6571 TCGA-F5-6702 TCGA-F5-6810 TCGA-F5-6811 TCGA-F5-6812 TCGA-F5-6813 
        0.85         2.17         0.39         1.02         0.66         0.69 
TCGA-F5-6863 TCGA-F5-6864 TCGA-G5-6233 TCGA-G5-6235 TCGA-G5-6572 TCGA-G5-6641 
        0.76         0.46        18.25        55.76        47.08        26.43 

$`DEL PEAK 28(18Q21.2) WILD-TYPE`
TCGA-AF-5654 TCGA-AG-3599 TCGA-AG-3878 TCGA-AG-3892 TCGA-AG-3894 TCGA-AG-A002 
        8.45         0.99         0.99         1.02         0.99        20.94 
TCGA-AG-A015 TCGA-AG-A025 TCGA-AG-A02N TCGA-AH-6547 TCGA-DY-A1H8 TCGA-EI-6507 
       13.02        49.94        61.94         1.45        32.58        19.96 
TCGA-EI-6882 TCGA-EI-6917 TCGA-F5-6814 TCGA-F5-6861 
        8.61        17.46         0.53         1.08 

  DEL PEAK 28(18Q21.2) MUTATED DEL PEAK 28(18Q21.2) WILD-TYPE 
                          0.39                           0.53 
  DEL PEAK 28(18Q21.2) MUTATED DEL PEAK 28(18Q21.2) WILD-TYPE 
                        129.27                          61.94 
  DEL PEAK 28(18Q21.2) MUTATED DEL PEAK 28(18Q21.2) WILD-TYPE 
                         11.26                           8.53 
[1] "0.4 - 129.3 (11.3)" "0.5 - 61.9 (8.5)"  
                    TCGA-AF-2687                     TCGA-AF-2689 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-AF-2690                     TCGA-AF-2691 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-AF-2692                     TCGA-AF-2693 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-AF-3400                     TCGA-AF-3911 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-AF-3913                     TCGA-AF-4110 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 28(18Q21.2) WILD-TYPE"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-AF-6655                     TCGA-AF-6672 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-AG-3575                     TCGA-AG-3581 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-AG-3582                     TCGA-AG-3583 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-AG-3586                     TCGA-AG-3587 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"DEL PEAK 28(18Q21.2) WILD-TYPE"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-AG-3726                     TCGA-AG-3727 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-AG-3731                     TCGA-AG-3742 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"DEL PEAK 28(18Q21.2) WILD-TYPE"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-AG-3887                     TCGA-AG-3892 
  "DEL PEAK 28(18Q21.2) MUTATED" "DEL PEAK 28(18Q21.2) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
  "DEL PEAK 28(18Q21.2) MUTATED" "DEL PEAK 28(18Q21.2) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-AG-4001                     TCGA-AG-4007 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-AG-4008                     TCGA-AG-4022 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"DEL PEAK 28(18Q21.2) WILD-TYPE"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-AG-A014                     TCGA-AG-A015 
  "DEL PEAK 28(18Q21.2) MUTATED" "DEL PEAK 28(18Q21.2) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-AG-A020                     TCGA-AG-A023 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"DEL PEAK 28(18Q21.2) WILD-TYPE"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
  "DEL PEAK 28(18Q21.2) MUTATED" "DEL PEAK 28(18Q21.2) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-AH-6544                     TCGA-AH-6547 
  "DEL PEAK 28(18Q21.2) MUTATED" "DEL PEAK 28(18Q21.2) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-AH-6897                     TCGA-AH-6903 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-BM-6198                     TCGA-CI-6619 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-CI-6620                     TCGA-CI-6622 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-CI-6623                     TCGA-CI-6624 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-CL-4957                     TCGA-CL-5917 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-CL-5918                     TCGA-DC-4745 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-DC-4749                     TCGA-DC-5337 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-DC-5869                     TCGA-DC-6154 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-DC-6155                     TCGA-DC-6156 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-DC-6157                     TCGA-DC-6158 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-DC-6160                     TCGA-DC-6681 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-DC-6682                     TCGA-DC-6683 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
  "DEL PEAK 28(18Q21.2) MUTATED" "DEL PEAK 28(18Q21.2) WILD-TYPE" 
                    TCGA-EF-5830                     TCGA-EF-5831 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-EI-6506                     TCGA-EI-6507 
  "DEL PEAK 28(18Q21.2) MUTATED" "DEL PEAK 28(18Q21.2) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-EI-6510                     TCGA-EI-6511 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-EI-6512                     TCGA-EI-6513 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-EI-6514                     TCGA-EI-6881 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"DEL PEAK 28(18Q21.2) WILD-TYPE"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-EI-6884                     TCGA-EI-6885 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"DEL PEAK 28(18Q21.2) WILD-TYPE"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-EI-7004                     TCGA-F5-6465 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-F5-6571                     TCGA-F5-6702 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-F5-6810                     TCGA-F5-6811 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-F5-6812                     TCGA-F5-6813 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"DEL PEAK 28(18Q21.2) WILD-TYPE" "DEL PEAK 28(18Q21.2) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-G5-6233                     TCGA-G5-6235 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-G5-6572                     TCGA-G5-6641 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-AF-2687                     TCGA-AF-2689 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-AF-2690                     TCGA-AF-2691 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-AF-2692                     TCGA-AF-2693 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-AF-3400                     TCGA-AF-3911 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-AF-3913                     TCGA-AF-4110 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 28(18Q21.2) WILD-TYPE"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-AF-6655                     TCGA-AF-6672 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-AG-3575                     TCGA-AG-3581 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-AG-3582                     TCGA-AG-3583 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-AG-3586                     TCGA-AG-3587 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"DEL PEAK 28(18Q21.2) WILD-TYPE"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-AG-3726                     TCGA-AG-3727 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-AG-3731                     TCGA-AG-3742 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"DEL PEAK 28(18Q21.2) WILD-TYPE"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-AG-3887                     TCGA-AG-3892 
  "DEL PEAK 28(18Q21.2) MUTATED" "DEL PEAK 28(18Q21.2) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
  "DEL PEAK 28(18Q21.2) MUTATED" "DEL PEAK 28(18Q21.2) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-AG-4001                     TCGA-AG-4007 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-AG-4008                     TCGA-AG-4022 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"DEL PEAK 28(18Q21.2) WILD-TYPE"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-AG-A014                     TCGA-AG-A015 
  "DEL PEAK 28(18Q21.2) MUTATED" "DEL PEAK 28(18Q21.2) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-AG-A020                     TCGA-AG-A023 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"DEL PEAK 28(18Q21.2) WILD-TYPE"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
  "DEL PEAK 28(18Q21.2) MUTATED" "DEL PEAK 28(18Q21.2) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-AH-6544                     TCGA-AH-6547 
  "DEL PEAK 28(18Q21.2) MUTATED" "DEL PEAK 28(18Q21.2) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-AH-6897                     TCGA-AH-6903 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-BM-6198                     TCGA-CI-6619 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-CI-6620                     TCGA-CI-6622 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-CI-6623                     TCGA-CI-6624 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-CL-4957                     TCGA-CL-5917 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-CL-5918                     TCGA-DC-4745 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-DC-4749                     TCGA-DC-5337 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-DC-5869                     TCGA-DC-6154 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-DC-6155                     TCGA-DC-6156 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-DC-6157                     TCGA-DC-6158 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-DC-6160                     TCGA-DC-6681 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-DC-6682                     TCGA-DC-6683 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
  "DEL PEAK 28(18Q21.2) MUTATED" "DEL PEAK 28(18Q21.2) WILD-TYPE" 
                    TCGA-EF-5830                     TCGA-EF-5831 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-EI-6506                     TCGA-EI-6507 
  "DEL PEAK 28(18Q21.2) MUTATED" "DEL PEAK 28(18Q21.2) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-EI-6510                     TCGA-EI-6511 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-EI-6512                     TCGA-EI-6513 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-EI-6514                     TCGA-EI-6881 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"DEL PEAK 28(18Q21.2) WILD-TYPE"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-EI-6884                     TCGA-EI-6885 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"DEL PEAK 28(18Q21.2) WILD-TYPE"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-EI-7004                     TCGA-F5-6465 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-F5-6571                     TCGA-F5-6702 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-F5-6810                     TCGA-F5-6811 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-F5-6812                     TCGA-F5-6813 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"DEL PEAK 28(18Q21.2) WILD-TYPE" "DEL PEAK 28(18Q21.2) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-G5-6233                     TCGA-G5-6235 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-G5-6572                     TCGA-G5-6641 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-AF-2687                     TCGA-AF-2689 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-AF-2690                     TCGA-AF-2691 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-AF-2692                     TCGA-AF-2693 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-AF-3400                     TCGA-AF-3911 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-AF-3913                     TCGA-AF-4110 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 28(18Q21.2) WILD-TYPE"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-AF-6655                     TCGA-AF-6672 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-AG-3575                     TCGA-AG-3581 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-AG-3582                     TCGA-AG-3583 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-AG-3586                     TCGA-AG-3587 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"DEL PEAK 28(18Q21.2) WILD-TYPE"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-AG-3726                     TCGA-AG-3727 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-AG-3731                     TCGA-AG-3742 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"DEL PEAK 28(18Q21.2) WILD-TYPE"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-AG-3887                     TCGA-AG-3892 
  "DEL PEAK 28(18Q21.2) MUTATED" "DEL PEAK 28(18Q21.2) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
  "DEL PEAK 28(18Q21.2) MUTATED" "DEL PEAK 28(18Q21.2) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-AG-4001                     TCGA-AG-4007 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-AG-4008                     TCGA-AG-4022 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"DEL PEAK 28(18Q21.2) WILD-TYPE"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-AG-A014                     TCGA-AG-A015 
  "DEL PEAK 28(18Q21.2) MUTATED" "DEL PEAK 28(18Q21.2) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-AG-A020                     TCGA-AG-A023 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"DEL PEAK 28(18Q21.2) WILD-TYPE"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
  "DEL PEAK 28(18Q21.2) MUTATED" "DEL PEAK 28(18Q21.2) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-AH-6544                     TCGA-AH-6547 
  "DEL PEAK 28(18Q21.2) MUTATED" "DEL PEAK 28(18Q21.2) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-AH-6897                     TCGA-AH-6903 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-BM-6198                     TCGA-CI-6619 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-CI-6620                     TCGA-CI-6622 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-CI-6623                     TCGA-CI-6624 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-CL-4957                     TCGA-CL-5917 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-CL-5918                     TCGA-DC-4745 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-DC-4749                     TCGA-DC-5337 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-DC-5869                     TCGA-DC-6154 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-DC-6155                     TCGA-DC-6156 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-DC-6157                     TCGA-DC-6158 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-DC-6160                     TCGA-DC-6681 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-DC-6682                     TCGA-DC-6683 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
  "DEL PEAK 28(18Q21.2) MUTATED" "DEL PEAK 28(18Q21.2) WILD-TYPE" 
                    TCGA-EF-5830                     TCGA-EF-5831 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-EI-6506                     TCGA-EI-6507 
  "DEL PEAK 28(18Q21.2) MUTATED" "DEL PEAK 28(18Q21.2) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-EI-6510                     TCGA-EI-6511 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-EI-6512                     TCGA-EI-6513 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-EI-6514                     TCGA-EI-6881 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"DEL PEAK 28(18Q21.2) WILD-TYPE"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-EI-6884                     TCGA-EI-6885 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"DEL PEAK 28(18Q21.2) WILD-TYPE"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-EI-7004                     TCGA-F5-6465 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-F5-6571                     TCGA-F5-6702 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-F5-6810                     TCGA-F5-6811 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-F5-6812                     TCGA-F5-6813 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"DEL PEAK 28(18Q21.2) WILD-TYPE" "DEL PEAK 28(18Q21.2) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-G5-6233                     TCGA-G5-6235 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
                    TCGA-G5-6572                     TCGA-G5-6641 
  "DEL PEAK 28(18Q21.2) MUTATED"   "DEL PEAK 28(18Q21.2) MUTATED" 
[1] "hr=" "1.8"
D53V2, continuous
                                vv
clus                             STAGE I STAGE II STAGE IIA STAGE IIB STAGE IIC
  DEL PEAK 28(18Q21.2) MUTATED        22        7        34         2         2
  DEL PEAK 28(18Q21.2) WILD-TYPE       8        1         4         0         0
                                vv
clus                             STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  DEL PEAK 28(18Q21.2) MUTATED           5          6         23         12
  DEL PEAK 28(18Q21.2) WILD-TYPE         0          3          0          2
                                vv
clus                             STAGE IV STAGE IVA
  DEL PEAK 28(18Q21.2) MUTATED         17         9
  DEL PEAK 28(18Q21.2) WILD-TYPE        0         0
D53V3, multiclass
                                vv
clus                              T1  T2  T3  T4
  DEL PEAK 28(18Q21.2) MUTATED     5  23 101  13
  DEL PEAK 28(18Q21.2) WILD-TYPE   4   6   8   1
D53V4, multiclass
    clus
vv   DEL PEAK 28(18Q21.2) MUTATED DEL PEAK 28(18Q21.2) WILD-TYPE
  T1                            5                              4
  T2                           23                              6
  T3                          101                              8
  T4                           13                              1
                                vv
clus                             N0 N1 N2
  DEL PEAK 28(18Q21.2) MUTATED   68 43 30
  DEL PEAK 28(18Q21.2) WILD-TYPE 15  2  2
D53V5, multiclass
    clus
vv   DEL PEAK 28(18Q21.2) MUTATED DEL PEAK 28(18Q21.2) WILD-TYPE
  N0                           68                             15
  N1                           43                              2
  N2                           30                              2
                                vv
clus                              M0  M1 M1A  MX
  DEL PEAK 28(18Q21.2) MUTATED   105  22   2  12
  DEL PEAK 28(18Q21.2) WILD-TYPE  18   0   0   1
D53V6, multiclass
     clus
vv    DEL PEAK 28(18Q21.2) MUTATED DEL PEAK 28(18Q21.2) WILD-TYPE
  M0                           105                             18
  M1                            22                              0
  M1A                            2                              0
  MX                            12                              1
D53V7, binary
                                cls
clus                              0  1
  DEL PEAK 28(18Q21.2) MUTATED   65 78
  DEL PEAK 28(18Q21.2) WILD-TYPE  9 10
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 28(18Q21.2) MUTATED     65   78
  DEL PEAK 28(18Q21.2) WILD-TYPE    9   10
        clus
vv       DEL PEAK 28(18Q21.2) MUTATED DEL PEAK 28(18Q21.2) WILD-TYPE
  FEMALE                           65                              9
  MALE                             78                             10
D53V8, binary
                                cls
clus                               0   1
  DEL PEAK 28(18Q21.2) MUTATED   126  12
  DEL PEAK 28(18Q21.2) WILD-TYPE  17   1
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 28(18Q21.2) MUTATED    126   12
  DEL PEAK 28(18Q21.2) WILD-TYPE   17    1
                                clus
vv                               DEL PEAK 28(18Q21.2) MUTATED
  RECTAL ADENOCARCINOMA                                   126
  RECTAL MUCINOUS ADENOCARCINOMA                           12
                                clus
vv                               DEL PEAK 28(18Q21.2) WILD-TYPE
  RECTAL ADENOCARCINOMA                                      17
  RECTAL MUCINOUS ADENOCARCINOMA                              1
D53V9, binary
                                cls
clus                               0   1
  DEL PEAK 28(18Q21.2) MUTATED     6 137
  DEL PEAK 28(18Q21.2) WILD-TYPE   0  19
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 28(18Q21.2) MUTATED      6  137
  DEL PEAK 28(18Q21.2) WILD-TYPE    0   19
     clus
vv    DEL PEAK 28(18Q21.2) MUTATED DEL PEAK 28(18Q21.2) WILD-TYPE
  NO                             6                              0
  YES                          137                             19
                                vv
clus                              R0  R1  R2  RX
  DEL PEAK 28(18Q21.2) MUTATED   104   2  12   3
  DEL PEAK 28(18Q21.2) WILD-TYPE  17   0   0   0
D53V10, multiclass
    clus
vv   DEL PEAK 28(18Q21.2) MUTATED DEL PEAK 28(18Q21.2) WILD-TYPE
  R0                          104                             17
  R1                            2                              0
  R2                           12                              0
  RX                            3                              0
D53V11, continuous

Clustering(54) Variable = DEL PEAK 29(18Q22.1) MUTATION ANALYSIS
D54V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 29(18Q22.1) MUTATED   98 12
  DEL PEAK 29(18Q22.1) WILD-TYPE 19  1
  DEL PEAK 29(18Q22.1) MUTATED DEL PEAK 29(18Q22.1) WILD-TYPE 
                           110                             20 
  DEL PEAK 29(18Q22.1) MUTATED DEL PEAK 29(18Q22.1) WILD-TYPE 
                            12                              1 
$`DEL PEAK 29(18Q22.1) MUTATED`
TCGA-AF-2687 TCGA-AF-2689 TCGA-AF-2690 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-2693 
       24.13        17.95        17.23        10.62        13.55        19.10 
TCGA-AF-3400 TCGA-AF-3911 TCGA-AF-3913 TCGA-AF-4110 TCGA-AF-6136 TCGA-AF-6655 
       12.72        25.02        10.39        14.50        15.35        11.67 
TCGA-AF-6672 TCGA-AG-3575 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 
       10.39        12.00         1.02         1.02         2.01         1.02 
TCGA-AG-3605 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3742 TCGA-AG-3883 TCGA-AG-3887 
        0.99         7.96         0.95         0.99         1.02         0.92 
TCGA-AG-3893 TCGA-AG-3896 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 
        0.99         1.02         1.02         1.02         1.02         1.02 
TCGA-AG-4022 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 
        0.99        13.91         6.02        25.94        23.01        17.03 
TCGA-AG-A014 TCGA-AG-A016 TCGA-AG-A01J TCGA-AG-A01L TCGA-AG-A01N TCGA-AG-A01W 
       15.91         1.02         1.02        12.00        12.00        70.03 
TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A023 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02X 
       63.98        10.98        51.98         1.94        38.93        40.96 
TCGA-AG-A032 TCGA-AH-6544 TCGA-AH-6643 TCGA-AH-6644 TCGA-AH-6897 TCGA-BM-6198 
       38.01         0.49         0.69         0.72         4.60        10.19 
TCGA-CI-6619 TCGA-CI-6620 TCGA-CI-6622 TCGA-CI-6623 TCGA-CI-6624 TCGA-CL-4957 
        6.02         6.02         6.94         9.37         4.70        13.97 
TCGA-CL-5917 TCGA-CL-5918 TCGA-DC-4745 TCGA-DC-4749 TCGA-DC-5337 TCGA-DC-5869 
       60.00         7.99        10.98        11.01        15.02        12.99 
TCGA-DC-6154 TCGA-DC-6155 TCGA-DC-6156 TCGA-DC-6157 TCGA-DC-6158 TCGA-DC-6160 
       12.00        14.01        15.02        36.00         6.97        30.05 
TCGA-DC-6681 TCGA-DC-6682 TCGA-DC-6683 TCGA-DY-A0XA TCGA-DY-A1DC TCGA-DY-A1DD 
       12.95        13.02        10.06       126.41        41.33        57.24 
TCGA-DY-A1DE TCGA-DY-A1DF TCGA-DY-A1DG TCGA-EF-5830 TCGA-EF-5831 TCGA-EI-6506 
      129.27        24.13        51.48         0.49         2.40        20.55 
TCGA-EI-6508 TCGA-EI-6509 TCGA-EI-6510 TCGA-EI-6511 TCGA-EI-6512 TCGA-EI-6513 
       20.91        17.00        18.28        15.85        17.69        16.34 
TCGA-EI-6514 TCGA-EI-6881 TCGA-EI-6883 TCGA-EI-6884 TCGA-EI-6885 TCGA-EI-7002 
       16.31        16.37        11.51        10.78        13.61        11.97 
TCGA-EI-7004 TCGA-F5-6465 TCGA-F5-6571 TCGA-F5-6702 TCGA-F5-6810 TCGA-F5-6811 
        8.45         3.39         0.85         2.17         0.39         1.02 
TCGA-F5-6812 TCGA-F5-6813 TCGA-F5-6863 TCGA-F5-6864 TCGA-G5-6233 TCGA-G5-6235 
        0.66         0.69         0.76         0.46        18.25        55.76 
TCGA-G5-6572 TCGA-G5-6641 
       47.08        26.43 

$`DEL PEAK 29(18Q22.1) WILD-TYPE`
TCGA-AF-5654 TCGA-AG-3586 TCGA-AG-3599 TCGA-AG-3731 TCGA-AG-3878 TCGA-AG-3892 
        8.45         1.02         0.99         1.02         0.99         1.02 
TCGA-AG-3894 TCGA-AG-A002 TCGA-AG-A015 TCGA-AG-A025 TCGA-AG-A02N TCGA-AH-6547 
        0.99        20.94        13.02        49.94        61.94         1.45 
TCGA-AH-6903 TCGA-DT-5265 TCGA-DY-A1H8 TCGA-EI-6507 TCGA-EI-6882 TCGA-EI-6917 
        1.81         5.29        32.58        19.96         8.61        17.46 
TCGA-F5-6814 TCGA-F5-6861 
        0.53         1.08 

  DEL PEAK 29(18Q22.1) MUTATED DEL PEAK 29(18Q22.1) WILD-TYPE 
                          0.39                           0.53 
  DEL PEAK 29(18Q22.1) MUTATED DEL PEAK 29(18Q22.1) WILD-TYPE 
                        129.27                          61.94 
  DEL PEAK 29(18Q22.1) MUTATED DEL PEAK 29(18Q22.1) WILD-TYPE 
                         11.82                           3.55 
[1] "0.4 - 129.3 (11.8)" "0.5 - 61.9 (3.5)"  
                    TCGA-AF-2687                     TCGA-AF-2689 
  "DEL PEAK 29(18Q22.1) MUTATED"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-AF-2690                     TCGA-AF-2691 
  "DEL PEAK 29(18Q22.1) MUTATED"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-AF-2692                     TCGA-AF-2693 
  "DEL PEAK 29(18Q22.1) MUTATED"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-AF-3400                     TCGA-AF-3911 
  "DEL PEAK 29(18Q22.1) MUTATED"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-AF-3913                     TCGA-AF-4110 
  "DEL PEAK 29(18Q22.1) MUTATED"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 29(18Q22.1) WILD-TYPE"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-AF-6655                     TCGA-AF-6672 
  "DEL PEAK 29(18Q22.1) MUTATED"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-AG-3575                     TCGA-AG-3581 
  "DEL PEAK 29(18Q22.1) MUTATED"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-AG-3582                     TCGA-AG-3583 
  "DEL PEAK 29(18Q22.1) MUTATED"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"DEL PEAK 29(18Q22.1) WILD-TYPE"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"DEL PEAK 29(18Q22.1) WILD-TYPE"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-AG-3726                     TCGA-AG-3727 
  "DEL PEAK 29(18Q22.1) MUTATED"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"DEL PEAK 29(18Q22.1) WILD-TYPE"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"DEL PEAK 29(18Q22.1) WILD-TYPE"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-AG-3887                     TCGA-AG-3892 
  "DEL PEAK 29(18Q22.1) MUTATED" "DEL PEAK 29(18Q22.1) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
  "DEL PEAK 29(18Q22.1) MUTATED" "DEL PEAK 29(18Q22.1) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
  "DEL PEAK 29(18Q22.1) MUTATED"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-AG-4001                     TCGA-AG-4007 
  "DEL PEAK 29(18Q22.1) MUTATED"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-AG-4008                     TCGA-AG-4022 
  "DEL PEAK 29(18Q22.1) MUTATED"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"DEL PEAK 29(18Q22.1) WILD-TYPE"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
  "DEL PEAK 29(18Q22.1) MUTATED"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
  "DEL PEAK 29(18Q22.1) MUTATED"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-AG-A014                     TCGA-AG-A015 
  "DEL PEAK 29(18Q22.1) MUTATED" "DEL PEAK 29(18Q22.1) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
  "DEL PEAK 29(18Q22.1) MUTATED"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
  "DEL PEAK 29(18Q22.1) MUTATED"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
  "DEL PEAK 29(18Q22.1) MUTATED"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-AG-A020                     TCGA-AG-A023 
  "DEL PEAK 29(18Q22.1) MUTATED"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"DEL PEAK 29(18Q22.1) WILD-TYPE"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
  "DEL PEAK 29(18Q22.1) MUTATED" "DEL PEAK 29(18Q22.1) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
  "DEL PEAK 29(18Q22.1) MUTATED"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-AH-6544                     TCGA-AH-6547 
  "DEL PEAK 29(18Q22.1) MUTATED" "DEL PEAK 29(18Q22.1) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
  "DEL PEAK 29(18Q22.1) MUTATED"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-AH-6897                     TCGA-AH-6903 
  "DEL PEAK 29(18Q22.1) MUTATED" "DEL PEAK 29(18Q22.1) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
  "DEL PEAK 29(18Q22.1) MUTATED"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-CI-6620                     TCGA-CI-6622 
  "DEL PEAK 29(18Q22.1) MUTATED"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-CI-6623                     TCGA-CI-6624 
  "DEL PEAK 29(18Q22.1) MUTATED"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-CL-4957                     TCGA-CL-5917 
  "DEL PEAK 29(18Q22.1) MUTATED"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-CL-5918                     TCGA-DC-4745 
  "DEL PEAK 29(18Q22.1) MUTATED"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-DC-4749                     TCGA-DC-5337 
  "DEL PEAK 29(18Q22.1) MUTATED"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-DC-5869                     TCGA-DC-6154 
  "DEL PEAK 29(18Q22.1) MUTATED"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-DC-6155                     TCGA-DC-6156 
  "DEL PEAK 29(18Q22.1) MUTATED"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-DC-6157                     TCGA-DC-6158 
  "DEL PEAK 29(18Q22.1) MUTATED"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-DC-6160                     TCGA-DC-6681 
  "DEL PEAK 29(18Q22.1) MUTATED"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-DC-6682                     TCGA-DC-6683 
  "DEL PEAK 29(18Q22.1) MUTATED"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"DEL PEAK 29(18Q22.1) WILD-TYPE"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
  "DEL PEAK 29(18Q22.1) MUTATED"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
  "DEL PEAK 29(18Q22.1) MUTATED"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
  "DEL PEAK 29(18Q22.1) MUTATED" "DEL PEAK 29(18Q22.1) WILD-TYPE" 
                    TCGA-EF-5830                     TCGA-EF-5831 
  "DEL PEAK 29(18Q22.1) MUTATED"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-EI-6506                     TCGA-EI-6507 
  "DEL PEAK 29(18Q22.1) MUTATED" "DEL PEAK 29(18Q22.1) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
  "DEL PEAK 29(18Q22.1) MUTATED"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-EI-6510                     TCGA-EI-6511 
  "DEL PEAK 29(18Q22.1) MUTATED"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-EI-6512                     TCGA-EI-6513 
  "DEL PEAK 29(18Q22.1) MUTATED"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-EI-6514                     TCGA-EI-6881 
  "DEL PEAK 29(18Q22.1) MUTATED"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"DEL PEAK 29(18Q22.1) WILD-TYPE"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-EI-6884                     TCGA-EI-6885 
  "DEL PEAK 29(18Q22.1) MUTATED"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"DEL PEAK 29(18Q22.1) WILD-TYPE"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-EI-7004                     TCGA-F5-6465 
  "DEL PEAK 29(18Q22.1) MUTATED"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-F5-6571                     TCGA-F5-6702 
  "DEL PEAK 29(18Q22.1) MUTATED"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-F5-6810                     TCGA-F5-6811 
  "DEL PEAK 29(18Q22.1) MUTATED"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-F5-6812                     TCGA-F5-6813 
  "DEL PEAK 29(18Q22.1) MUTATED"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"DEL PEAK 29(18Q22.1) WILD-TYPE" "DEL PEAK 29(18Q22.1) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
  "DEL PEAK 29(18Q22.1) MUTATED"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-G5-6233                     TCGA-G5-6235 
  "DEL PEAK 29(18Q22.1) MUTATED"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-G5-6572                     TCGA-G5-6641 
  "DEL PEAK 29(18Q22.1) MUTATED"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-AF-2687                     TCGA-AF-2689 
  "DEL PEAK 29(18Q22.1) MUTATED"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-AF-2690                     TCGA-AF-2691 
  "DEL PEAK 29(18Q22.1) MUTATED"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-AF-2692                     TCGA-AF-2693 
  "DEL PEAK 29(18Q22.1) MUTATED"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-AF-3400                     TCGA-AF-3911 
  "DEL PEAK 29(18Q22.1) MUTATED"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-AF-3913                     TCGA-AF-4110 
  "DEL PEAK 29(18Q22.1) MUTATED"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 29(18Q22.1) WILD-TYPE"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-AF-6655                     TCGA-AF-6672 
  "DEL PEAK 29(18Q22.1) MUTATED"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-AG-3575                     TCGA-AG-3581 
  "DEL PEAK 29(18Q22.1) MUTATED"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-AG-3582                     TCGA-AG-3583 
  "DEL PEAK 29(18Q22.1) MUTATED"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"DEL PEAK 29(18Q22.1) WILD-TYPE"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"DEL PEAK 29(18Q22.1) WILD-TYPE"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-AG-3726                     TCGA-AG-3727 
  "DEL PEAK 29(18Q22.1) MUTATED"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"DEL PEAK 29(18Q22.1) WILD-TYPE"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"DEL PEAK 29(18Q22.1) WILD-TYPE"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-AG-3887                     TCGA-AG-3892 
  "DEL PEAK 29(18Q22.1) MUTATED" "DEL PEAK 29(18Q22.1) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
  "DEL PEAK 29(18Q22.1) MUTATED" "DEL PEAK 29(18Q22.1) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
  "DEL PEAK 29(18Q22.1) MUTATED"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-AG-4001                     TCGA-AG-4007 
  "DEL PEAK 29(18Q22.1) MUTATED"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-AG-4008                     TCGA-AG-4022 
  "DEL PEAK 29(18Q22.1) MUTATED"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"DEL PEAK 29(18Q22.1) WILD-TYPE"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
  "DEL PEAK 29(18Q22.1) MUTATED"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
  "DEL PEAK 29(18Q22.1) MUTATED"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-AG-A014                     TCGA-AG-A015 
  "DEL PEAK 29(18Q22.1) MUTATED" "DEL PEAK 29(18Q22.1) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
  "DEL PEAK 29(18Q22.1) MUTATED"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
  "DEL PEAK 29(18Q22.1) MUTATED"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
  "DEL PEAK 29(18Q22.1) MUTATED"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-AG-A020                     TCGA-AG-A023 
  "DEL PEAK 29(18Q22.1) MUTATED"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"DEL PEAK 29(18Q22.1) WILD-TYPE"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
  "DEL PEAK 29(18Q22.1) MUTATED" "DEL PEAK 29(18Q22.1) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
  "DEL PEAK 29(18Q22.1) MUTATED"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-AH-6544                     TCGA-AH-6547 
  "DEL PEAK 29(18Q22.1) MUTATED" "DEL PEAK 29(18Q22.1) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
  "DEL PEAK 29(18Q22.1) MUTATED"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-AH-6897                     TCGA-AH-6903 
  "DEL PEAK 29(18Q22.1) MUTATED" "DEL PEAK 29(18Q22.1) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
  "DEL PEAK 29(18Q22.1) MUTATED"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-CI-6620                     TCGA-CI-6622 
  "DEL PEAK 29(18Q22.1) MUTATED"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-CI-6623                     TCGA-CI-6624 
  "DEL PEAK 29(18Q22.1) MUTATED"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-CL-4957                     TCGA-CL-5917 
  "DEL PEAK 29(18Q22.1) MUTATED"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-CL-5918                     TCGA-DC-4745 
  "DEL PEAK 29(18Q22.1) MUTATED"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-DC-4749                     TCGA-DC-5337 
  "DEL PEAK 29(18Q22.1) MUTATED"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-DC-5869                     TCGA-DC-6154 
  "DEL PEAK 29(18Q22.1) MUTATED"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-DC-6155                     TCGA-DC-6156 
  "DEL PEAK 29(18Q22.1) MUTATED"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-DC-6157                     TCGA-DC-6158 
  "DEL PEAK 29(18Q22.1) MUTATED"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-DC-6160                     TCGA-DC-6681 
  "DEL PEAK 29(18Q22.1) MUTATED"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-DC-6682                     TCGA-DC-6683 
  "DEL PEAK 29(18Q22.1) MUTATED"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"DEL PEAK 29(18Q22.1) WILD-TYPE"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
  "DEL PEAK 29(18Q22.1) MUTATED"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
  "DEL PEAK 29(18Q22.1) MUTATED"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
  "DEL PEAK 29(18Q22.1) MUTATED" "DEL PEAK 29(18Q22.1) WILD-TYPE" 
                    TCGA-EF-5830                     TCGA-EF-5831 
  "DEL PEAK 29(18Q22.1) MUTATED"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-EI-6506                     TCGA-EI-6507 
  "DEL PEAK 29(18Q22.1) MUTATED" "DEL PEAK 29(18Q22.1) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
  "DEL PEAK 29(18Q22.1) MUTATED"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-EI-6510                     TCGA-EI-6511 
  "DEL PEAK 29(18Q22.1) MUTATED"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-EI-6512                     TCGA-EI-6513 
  "DEL PEAK 29(18Q22.1) MUTATED"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-EI-6514                     TCGA-EI-6881 
  "DEL PEAK 29(18Q22.1) MUTATED"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"DEL PEAK 29(18Q22.1) WILD-TYPE"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-EI-6884                     TCGA-EI-6885 
  "DEL PEAK 29(18Q22.1) MUTATED"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"DEL PEAK 29(18Q22.1) WILD-TYPE"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-EI-7004                     TCGA-F5-6465 
  "DEL PEAK 29(18Q22.1) MUTATED"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-F5-6571                     TCGA-F5-6702 
  "DEL PEAK 29(18Q22.1) MUTATED"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-F5-6810                     TCGA-F5-6811 
  "DEL PEAK 29(18Q22.1) MUTATED"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-F5-6812                     TCGA-F5-6813 
  "DEL PEAK 29(18Q22.1) MUTATED"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"DEL PEAK 29(18Q22.1) WILD-TYPE" "DEL PEAK 29(18Q22.1) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
  "DEL PEAK 29(18Q22.1) MUTATED"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-G5-6233                     TCGA-G5-6235 
  "DEL PEAK 29(18Q22.1) MUTATED"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-G5-6572                     TCGA-G5-6641 
  "DEL PEAK 29(18Q22.1) MUTATED"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-AF-2687                     TCGA-AF-2689 
  "DEL PEAK 29(18Q22.1) MUTATED"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-AF-2690                     TCGA-AF-2691 
  "DEL PEAK 29(18Q22.1) MUTATED"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-AF-2692                     TCGA-AF-2693 
  "DEL PEAK 29(18Q22.1) MUTATED"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-AF-3400                     TCGA-AF-3911 
  "DEL PEAK 29(18Q22.1) MUTATED"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-AF-3913                     TCGA-AF-4110 
  "DEL PEAK 29(18Q22.1) MUTATED"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 29(18Q22.1) WILD-TYPE"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-AF-6655                     TCGA-AF-6672 
  "DEL PEAK 29(18Q22.1) MUTATED"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-AG-3575                     TCGA-AG-3581 
  "DEL PEAK 29(18Q22.1) MUTATED"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-AG-3582                     TCGA-AG-3583 
  "DEL PEAK 29(18Q22.1) MUTATED"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"DEL PEAK 29(18Q22.1) WILD-TYPE"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"DEL PEAK 29(18Q22.1) WILD-TYPE"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-AG-3726                     TCGA-AG-3727 
  "DEL PEAK 29(18Q22.1) MUTATED"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"DEL PEAK 29(18Q22.1) WILD-TYPE"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"DEL PEAK 29(18Q22.1) WILD-TYPE"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-AG-3887                     TCGA-AG-3892 
  "DEL PEAK 29(18Q22.1) MUTATED" "DEL PEAK 29(18Q22.1) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
  "DEL PEAK 29(18Q22.1) MUTATED" "DEL PEAK 29(18Q22.1) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
  "DEL PEAK 29(18Q22.1) MUTATED"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-AG-4001                     TCGA-AG-4007 
  "DEL PEAK 29(18Q22.1) MUTATED"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-AG-4008                     TCGA-AG-4022 
  "DEL PEAK 29(18Q22.1) MUTATED"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"DEL PEAK 29(18Q22.1) WILD-TYPE"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
  "DEL PEAK 29(18Q22.1) MUTATED"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
  "DEL PEAK 29(18Q22.1) MUTATED"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-AG-A014                     TCGA-AG-A015 
  "DEL PEAK 29(18Q22.1) MUTATED" "DEL PEAK 29(18Q22.1) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
  "DEL PEAK 29(18Q22.1) MUTATED"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
  "DEL PEAK 29(18Q22.1) MUTATED"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
  "DEL PEAK 29(18Q22.1) MUTATED"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-AG-A020                     TCGA-AG-A023 
  "DEL PEAK 29(18Q22.1) MUTATED"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"DEL PEAK 29(18Q22.1) WILD-TYPE"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
  "DEL PEAK 29(18Q22.1) MUTATED" "DEL PEAK 29(18Q22.1) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
  "DEL PEAK 29(18Q22.1) MUTATED"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-AH-6544                     TCGA-AH-6547 
  "DEL PEAK 29(18Q22.1) MUTATED" "DEL PEAK 29(18Q22.1) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
  "DEL PEAK 29(18Q22.1) MUTATED"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-AH-6897                     TCGA-AH-6903 
  "DEL PEAK 29(18Q22.1) MUTATED" "DEL PEAK 29(18Q22.1) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
  "DEL PEAK 29(18Q22.1) MUTATED"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-CI-6620                     TCGA-CI-6622 
  "DEL PEAK 29(18Q22.1) MUTATED"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-CI-6623                     TCGA-CI-6624 
  "DEL PEAK 29(18Q22.1) MUTATED"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-CL-4957                     TCGA-CL-5917 
  "DEL PEAK 29(18Q22.1) MUTATED"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-CL-5918                     TCGA-DC-4745 
  "DEL PEAK 29(18Q22.1) MUTATED"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-DC-4749                     TCGA-DC-5337 
  "DEL PEAK 29(18Q22.1) MUTATED"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-DC-5869                     TCGA-DC-6154 
  "DEL PEAK 29(18Q22.1) MUTATED"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-DC-6155                     TCGA-DC-6156 
  "DEL PEAK 29(18Q22.1) MUTATED"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-DC-6157                     TCGA-DC-6158 
  "DEL PEAK 29(18Q22.1) MUTATED"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-DC-6160                     TCGA-DC-6681 
  "DEL PEAK 29(18Q22.1) MUTATED"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-DC-6682                     TCGA-DC-6683 
  "DEL PEAK 29(18Q22.1) MUTATED"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"DEL PEAK 29(18Q22.1) WILD-TYPE"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
  "DEL PEAK 29(18Q22.1) MUTATED"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
  "DEL PEAK 29(18Q22.1) MUTATED"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
  "DEL PEAK 29(18Q22.1) MUTATED" "DEL PEAK 29(18Q22.1) WILD-TYPE" 
                    TCGA-EF-5830                     TCGA-EF-5831 
  "DEL PEAK 29(18Q22.1) MUTATED"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-EI-6506                     TCGA-EI-6507 
  "DEL PEAK 29(18Q22.1) MUTATED" "DEL PEAK 29(18Q22.1) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
  "DEL PEAK 29(18Q22.1) MUTATED"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-EI-6510                     TCGA-EI-6511 
  "DEL PEAK 29(18Q22.1) MUTATED"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-EI-6512                     TCGA-EI-6513 
  "DEL PEAK 29(18Q22.1) MUTATED"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-EI-6514                     TCGA-EI-6881 
  "DEL PEAK 29(18Q22.1) MUTATED"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"DEL PEAK 29(18Q22.1) WILD-TYPE"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-EI-6884                     TCGA-EI-6885 
  "DEL PEAK 29(18Q22.1) MUTATED"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"DEL PEAK 29(18Q22.1) WILD-TYPE"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-EI-7004                     TCGA-F5-6465 
  "DEL PEAK 29(18Q22.1) MUTATED"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-F5-6571                     TCGA-F5-6702 
  "DEL PEAK 29(18Q22.1) MUTATED"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-F5-6810                     TCGA-F5-6811 
  "DEL PEAK 29(18Q22.1) MUTATED"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-F5-6812                     TCGA-F5-6813 
  "DEL PEAK 29(18Q22.1) MUTATED"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"DEL PEAK 29(18Q22.1) WILD-TYPE" "DEL PEAK 29(18Q22.1) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
  "DEL PEAK 29(18Q22.1) MUTATED"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-G5-6233                     TCGA-G5-6235 
  "DEL PEAK 29(18Q22.1) MUTATED"   "DEL PEAK 29(18Q22.1) MUTATED" 
                    TCGA-G5-6572                     TCGA-G5-6641 
  "DEL PEAK 29(18Q22.1) MUTATED"   "DEL PEAK 29(18Q22.1) MUTATED" 
[1] "hr=" "1.9"
D54V2, continuous
                                vv
clus                             STAGE I STAGE II STAGE IIA STAGE IIB STAGE IIC
  DEL PEAK 29(18Q22.1) MUTATED        22        6        34         2         2
  DEL PEAK 29(18Q22.1) WILD-TYPE       8        2         4         0         0
                                vv
clus                             STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  DEL PEAK 29(18Q22.1) MUTATED           3          6         22         12
  DEL PEAK 29(18Q22.1) WILD-TYPE         2          3          1          2
                                vv
clus                             STAGE IV STAGE IVA
  DEL PEAK 29(18Q22.1) MUTATED         16         9
  DEL PEAK 29(18Q22.1) WILD-TYPE        1         0
D54V3, multiclass
                                vv
clus                             T1 T2 T3 T4
  DEL PEAK 29(18Q22.1) MUTATED    5 23 96 13
  DEL PEAK 29(18Q22.1) WILD-TYPE  4  6 13  1
D54V4, multiclass
    clus
vv   DEL PEAK 29(18Q22.1) MUTATED DEL PEAK 29(18Q22.1) WILD-TYPE
  T1                            5                              4
  T2                           23                              6
  T3                           96                             13
  T4                           13                              1
                                vv
clus                             N0 N1 N2
  DEL PEAK 29(18Q22.1) MUTATED   67 40 29
  DEL PEAK 29(18Q22.1) WILD-TYPE 16  5  3
D54V5, multiclass
    clus
vv   DEL PEAK 29(18Q22.1) MUTATED DEL PEAK 29(18Q22.1) WILD-TYPE
  N0                           67                             16
  N1                           40                              5
  N2                           29                              3
                                vv
clus                              M0  M1 M1A  MX
  DEL PEAK 29(18Q22.1) MUTATED   102  21   2  11
  DEL PEAK 29(18Q22.1) WILD-TYPE  21   1   0   2
D54V6, multiclass
     clus
vv    DEL PEAK 29(18Q22.1) MUTATED DEL PEAK 29(18Q22.1) WILD-TYPE
  M0                           102                             21
  M1                            21                              1
  M1A                            2                              0
  MX                            11                              2
D54V7, binary
                                cls
clus                              0  1
  DEL PEAK 29(18Q22.1) MUTATED   64 74
  DEL PEAK 29(18Q22.1) WILD-TYPE 10 14
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 29(18Q22.1) MUTATED     64   74
  DEL PEAK 29(18Q22.1) WILD-TYPE   10   14
        clus
vv       DEL PEAK 29(18Q22.1) MUTATED DEL PEAK 29(18Q22.1) WILD-TYPE
  FEMALE                           64                             10
  MALE                             74                             14
D54V8, binary
                                cls
clus                               0   1
  DEL PEAK 29(18Q22.1) MUTATED   124  10
  DEL PEAK 29(18Q22.1) WILD-TYPE  19   3
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 29(18Q22.1) MUTATED    124   10
  DEL PEAK 29(18Q22.1) WILD-TYPE   19    3
                                clus
vv                               DEL PEAK 29(18Q22.1) MUTATED
  RECTAL ADENOCARCINOMA                                   124
  RECTAL MUCINOUS ADENOCARCINOMA                           10
                                clus
vv                               DEL PEAK 29(18Q22.1) WILD-TYPE
  RECTAL ADENOCARCINOMA                                      19
  RECTAL MUCINOUS ADENOCARCINOMA                              3
D54V9, binary
                                cls
clus                               0   1
  DEL PEAK 29(18Q22.1) MUTATED     6 132
  DEL PEAK 29(18Q22.1) WILD-TYPE   0  24
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 29(18Q22.1) MUTATED      6  132
  DEL PEAK 29(18Q22.1) WILD-TYPE    0   24
     clus
vv    DEL PEAK 29(18Q22.1) MUTATED DEL PEAK 29(18Q22.1) WILD-TYPE
  NO                             6                              0
  YES                          132                             24
                                vv
clus                              R0  R1  R2  RX
  DEL PEAK 29(18Q22.1) MUTATED   102   2  11   2
  DEL PEAK 29(18Q22.1) WILD-TYPE  19   0   1   1
D54V10, multiclass
    clus
vv   DEL PEAK 29(18Q22.1) MUTATED DEL PEAK 29(18Q22.1) WILD-TYPE
  R0                          102                             19
  R1                            2                              0
  R2                           11                              1
  RX                            2                              1
D54V11, continuous

Clustering(55) Variable = DEL PEAK 30(19P13.3) MUTATION ANALYSIS
D55V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 30(19P13.3) MUTATED   25  4
  DEL PEAK 30(19P13.3) WILD-TYPE 92  9
  DEL PEAK 30(19P13.3) MUTATED DEL PEAK 30(19P13.3) WILD-TYPE 
                            29                            101 
  DEL PEAK 30(19P13.3) MUTATED DEL PEAK 30(19P13.3) WILD-TYPE 
                             4                              9 
$`DEL PEAK 30(19P13.3) MUTATED`
TCGA-AF-2687 TCGA-AF-2689 TCGA-AF-4110 TCGA-AG-3575 TCGA-AG-3582 TCGA-AG-3893 
       24.13        17.95        14.50        12.00         1.02         0.99 
TCGA-AG-4008 TCGA-AG-A014 TCGA-AG-A016 TCGA-AG-A01Y TCGA-CI-6619 TCGA-CI-6620 
        1.02        15.91         1.02        63.98         6.02         6.02 
TCGA-CI-6624 TCGA-CL-4957 TCGA-DC-4749 TCGA-DC-5869 TCGA-DC-6155 TCGA-DC-6158 
        4.70        13.97        11.01        12.99        14.01         6.97 
TCGA-DT-5265 TCGA-DY-A1DE TCGA-DY-A1DF TCGA-DY-A1DG TCGA-EI-6509 TCGA-EI-6513 
        5.29       129.27        24.13        51.48        17.00        16.34 
TCGA-EI-6885 TCGA-F5-6571 TCGA-F5-6702 TCGA-F5-6810 TCGA-G5-6233 
       13.61         0.85         2.17         0.39        18.25 

$`DEL PEAK 30(19P13.3) WILD-TYPE`
TCGA-AF-2690 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-2693 TCGA-AF-3400 TCGA-AF-3911 
       17.23        10.62        13.55        19.10        12.72        25.02 
TCGA-AF-3913 TCGA-AF-5654 TCGA-AF-6136 TCGA-AF-6655 TCGA-AF-6672 TCGA-AG-3581 
       10.39         8.45        15.35        11.67        10.39         1.02 
TCGA-AG-3583 TCGA-AG-3586 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3605 TCGA-AG-3726 
        2.01         1.02         1.02         0.99         0.99         7.96 
TCGA-AG-3727 TCGA-AG-3731 TCGA-AG-3742 TCGA-AG-3878 TCGA-AG-3883 TCGA-AG-3887 
        0.95         1.02         0.99         0.99         1.02         0.92 
TCGA-AG-3892 TCGA-AG-3894 TCGA-AG-3896 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 
        1.02         0.99         1.02         1.02         1.02         1.02 
TCGA-AG-4022 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y 
        0.99        20.94        13.91         6.02        25.94        23.01 
TCGA-AG-A011 TCGA-AG-A015 TCGA-AG-A01J TCGA-AG-A01L TCGA-AG-A01N TCGA-AG-A01W 
       17.03        13.02         1.02        12.00        12.00        70.03 
TCGA-AG-A020 TCGA-AG-A023 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N 
       10.98        51.98        49.94         1.94        38.93        61.94 
TCGA-AG-A02X TCGA-AG-A032 TCGA-AH-6544 TCGA-AH-6547 TCGA-AH-6643 TCGA-AH-6644 
       40.96        38.01         0.49         1.45         0.69         0.72 
TCGA-AH-6897 TCGA-AH-6903 TCGA-BM-6198 TCGA-CI-6622 TCGA-CI-6623 TCGA-CL-5917 
        4.60         1.81        10.19         6.94         9.37        60.00 
TCGA-CL-5918 TCGA-DC-4745 TCGA-DC-5337 TCGA-DC-6154 TCGA-DC-6156 TCGA-DC-6157 
        7.99        10.98        15.02        12.00        15.02        36.00 
TCGA-DC-6160 TCGA-DC-6681 TCGA-DC-6682 TCGA-DC-6683 TCGA-DY-A0XA TCGA-DY-A1DC 
       30.05        12.95        13.02        10.06       126.41        41.33 
TCGA-DY-A1DD TCGA-DY-A1H8 TCGA-EF-5830 TCGA-EF-5831 TCGA-EI-6506 TCGA-EI-6507 
       57.24        32.58         0.49         2.40        20.55        19.96 
TCGA-EI-6508 TCGA-EI-6510 TCGA-EI-6511 TCGA-EI-6512 TCGA-EI-6514 TCGA-EI-6881 
       20.91        18.28        15.85        17.69        16.31        16.37 
TCGA-EI-6882 TCGA-EI-6883 TCGA-EI-6884 TCGA-EI-6917 TCGA-EI-7002 TCGA-EI-7004 
        8.61        11.51        10.78        17.46        11.97         8.45 
TCGA-F5-6465 TCGA-F5-6811 TCGA-F5-6812 TCGA-F5-6813 TCGA-F5-6814 TCGA-F5-6861 
        3.39         1.02         0.66         0.69         0.53         1.08 
TCGA-F5-6863 TCGA-F5-6864 TCGA-G5-6235 TCGA-G5-6572 TCGA-G5-6641 
        0.76         0.46        55.76        47.08        26.43 

  DEL PEAK 30(19P13.3) MUTATED DEL PEAK 30(19P13.3) WILD-TYPE 
                          0.39                           0.46 
  DEL PEAK 30(19P13.3) MUTATED DEL PEAK 30(19P13.3) WILD-TYPE 
                        129.27                         126.41 
  DEL PEAK 30(19P13.3) MUTATED DEL PEAK 30(19P13.3) WILD-TYPE 
                         12.99                          10.78 
[1] "0.4 - 129.3 (13.0)" "0.5 - 126.4 (10.8)"
                    TCGA-AF-2687                     TCGA-AF-2689 
  "DEL PEAK 30(19P13.3) MUTATED"   "DEL PEAK 30(19P13.3) MUTATED" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 30(19P13.3) WILD-TYPE"   "DEL PEAK 30(19P13.3) MUTATED" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-AG-3575                     TCGA-AG-3581 
  "DEL PEAK 30(19P13.3) MUTATED" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-AG-3582                     TCGA-AG-3583 
  "DEL PEAK 30(19P13.3) MUTATED" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
  "DEL PEAK 30(19P13.3) MUTATED" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-AG-4001                     TCGA-AG-4007 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-AG-4008                     TCGA-AG-4022 
  "DEL PEAK 30(19P13.3) MUTATED" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
  "DEL PEAK 30(19P13.3) MUTATED" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
  "DEL PEAK 30(19P13.3) MUTATED" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
"DEL PEAK 30(19P13.3) WILD-TYPE"   "DEL PEAK 30(19P13.3) MUTATED" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-AH-6544                     TCGA-AH-6547 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-AH-6897                     TCGA-AH-6903 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
"DEL PEAK 30(19P13.3) WILD-TYPE"   "DEL PEAK 30(19P13.3) MUTATED" 
                    TCGA-CI-6620                     TCGA-CI-6622 
  "DEL PEAK 30(19P13.3) MUTATED" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
"DEL PEAK 30(19P13.3) WILD-TYPE"   "DEL PEAK 30(19P13.3) MUTATED" 
                    TCGA-CL-4957                     TCGA-CL-5917 
  "DEL PEAK 30(19P13.3) MUTATED" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-CL-5918                     TCGA-DC-4745 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-DC-4749                     TCGA-DC-5337 
  "DEL PEAK 30(19P13.3) MUTATED" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
  "DEL PEAK 30(19P13.3) MUTATED" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-DC-6155                     TCGA-DC-6156 
  "DEL PEAK 30(19P13.3) MUTATED" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-DC-6157                     TCGA-DC-6158 
"DEL PEAK 30(19P13.3) WILD-TYPE"   "DEL PEAK 30(19P13.3) MUTATED" 
                    TCGA-DC-6160                     TCGA-DC-6681 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
  "DEL PEAK 30(19P13.3) MUTATED" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
  "DEL PEAK 30(19P13.3) MUTATED"   "DEL PEAK 30(19P13.3) MUTATED" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
  "DEL PEAK 30(19P13.3) MUTATED" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-EF-5830                     TCGA-EF-5831 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-EI-6506                     TCGA-EI-6507 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"DEL PEAK 30(19P13.3) WILD-TYPE"   "DEL PEAK 30(19P13.3) MUTATED" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-EI-6512                     TCGA-EI-6513 
"DEL PEAK 30(19P13.3) WILD-TYPE"   "DEL PEAK 30(19P13.3) MUTATED" 
                    TCGA-EI-6514                     TCGA-EI-6881 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-EI-6884                     TCGA-EI-6885 
"DEL PEAK 30(19P13.3) WILD-TYPE"   "DEL PEAK 30(19P13.3) MUTATED" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-EI-7004                     TCGA-F5-6465 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-F5-6571                     TCGA-F5-6702 
  "DEL PEAK 30(19P13.3) MUTATED"   "DEL PEAK 30(19P13.3) MUTATED" 
                    TCGA-F5-6810                     TCGA-F5-6811 
  "DEL PEAK 30(19P13.3) MUTATED" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-F5-6812                     TCGA-F5-6813 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-G5-6233                     TCGA-G5-6235 
  "DEL PEAK 30(19P13.3) MUTATED" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-AF-2687                     TCGA-AF-2689 
  "DEL PEAK 30(19P13.3) MUTATED"   "DEL PEAK 30(19P13.3) MUTATED" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 30(19P13.3) WILD-TYPE"   "DEL PEAK 30(19P13.3) MUTATED" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-AG-3575                     TCGA-AG-3581 
  "DEL PEAK 30(19P13.3) MUTATED" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-AG-3582                     TCGA-AG-3583 
  "DEL PEAK 30(19P13.3) MUTATED" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
  "DEL PEAK 30(19P13.3) MUTATED" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-AG-4001                     TCGA-AG-4007 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-AG-4008                     TCGA-AG-4022 
  "DEL PEAK 30(19P13.3) MUTATED" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
  "DEL PEAK 30(19P13.3) MUTATED" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
  "DEL PEAK 30(19P13.3) MUTATED" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
"DEL PEAK 30(19P13.3) WILD-TYPE"   "DEL PEAK 30(19P13.3) MUTATED" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-AH-6544                     TCGA-AH-6547 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-AH-6897                     TCGA-AH-6903 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
"DEL PEAK 30(19P13.3) WILD-TYPE"   "DEL PEAK 30(19P13.3) MUTATED" 
                    TCGA-CI-6620                     TCGA-CI-6622 
  "DEL PEAK 30(19P13.3) MUTATED" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
"DEL PEAK 30(19P13.3) WILD-TYPE"   "DEL PEAK 30(19P13.3) MUTATED" 
                    TCGA-CL-4957                     TCGA-CL-5917 
  "DEL PEAK 30(19P13.3) MUTATED" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-CL-5918                     TCGA-DC-4745 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-DC-4749                     TCGA-DC-5337 
  "DEL PEAK 30(19P13.3) MUTATED" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
  "DEL PEAK 30(19P13.3) MUTATED" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-DC-6155                     TCGA-DC-6156 
  "DEL PEAK 30(19P13.3) MUTATED" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-DC-6157                     TCGA-DC-6158 
"DEL PEAK 30(19P13.3) WILD-TYPE"   "DEL PEAK 30(19P13.3) MUTATED" 
                    TCGA-DC-6160                     TCGA-DC-6681 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
  "DEL PEAK 30(19P13.3) MUTATED" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
  "DEL PEAK 30(19P13.3) MUTATED"   "DEL PEAK 30(19P13.3) MUTATED" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
  "DEL PEAK 30(19P13.3) MUTATED" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-EF-5830                     TCGA-EF-5831 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-EI-6506                     TCGA-EI-6507 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"DEL PEAK 30(19P13.3) WILD-TYPE"   "DEL PEAK 30(19P13.3) MUTATED" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-EI-6512                     TCGA-EI-6513 
"DEL PEAK 30(19P13.3) WILD-TYPE"   "DEL PEAK 30(19P13.3) MUTATED" 
                    TCGA-EI-6514                     TCGA-EI-6881 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-EI-6884                     TCGA-EI-6885 
"DEL PEAK 30(19P13.3) WILD-TYPE"   "DEL PEAK 30(19P13.3) MUTATED" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-EI-7004                     TCGA-F5-6465 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-F5-6571                     TCGA-F5-6702 
  "DEL PEAK 30(19P13.3) MUTATED"   "DEL PEAK 30(19P13.3) MUTATED" 
                    TCGA-F5-6810                     TCGA-F5-6811 
  "DEL PEAK 30(19P13.3) MUTATED" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-F5-6812                     TCGA-F5-6813 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-G5-6233                     TCGA-G5-6235 
  "DEL PEAK 30(19P13.3) MUTATED" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-AF-2687                     TCGA-AF-2689 
  "DEL PEAK 30(19P13.3) MUTATED"   "DEL PEAK 30(19P13.3) MUTATED" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 30(19P13.3) WILD-TYPE"   "DEL PEAK 30(19P13.3) MUTATED" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-AG-3575                     TCGA-AG-3581 
  "DEL PEAK 30(19P13.3) MUTATED" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-AG-3582                     TCGA-AG-3583 
  "DEL PEAK 30(19P13.3) MUTATED" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
  "DEL PEAK 30(19P13.3) MUTATED" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-AG-4001                     TCGA-AG-4007 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-AG-4008                     TCGA-AG-4022 
  "DEL PEAK 30(19P13.3) MUTATED" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
  "DEL PEAK 30(19P13.3) MUTATED" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
  "DEL PEAK 30(19P13.3) MUTATED" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
"DEL PEAK 30(19P13.3) WILD-TYPE"   "DEL PEAK 30(19P13.3) MUTATED" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-AH-6544                     TCGA-AH-6547 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-AH-6897                     TCGA-AH-6903 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
"DEL PEAK 30(19P13.3) WILD-TYPE"   "DEL PEAK 30(19P13.3) MUTATED" 
                    TCGA-CI-6620                     TCGA-CI-6622 
  "DEL PEAK 30(19P13.3) MUTATED" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
"DEL PEAK 30(19P13.3) WILD-TYPE"   "DEL PEAK 30(19P13.3) MUTATED" 
                    TCGA-CL-4957                     TCGA-CL-5917 
  "DEL PEAK 30(19P13.3) MUTATED" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-CL-5918                     TCGA-DC-4745 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-DC-4749                     TCGA-DC-5337 
  "DEL PEAK 30(19P13.3) MUTATED" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
  "DEL PEAK 30(19P13.3) MUTATED" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-DC-6155                     TCGA-DC-6156 
  "DEL PEAK 30(19P13.3) MUTATED" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-DC-6157                     TCGA-DC-6158 
"DEL PEAK 30(19P13.3) WILD-TYPE"   "DEL PEAK 30(19P13.3) MUTATED" 
                    TCGA-DC-6160                     TCGA-DC-6681 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
  "DEL PEAK 30(19P13.3) MUTATED" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
  "DEL PEAK 30(19P13.3) MUTATED"   "DEL PEAK 30(19P13.3) MUTATED" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
  "DEL PEAK 30(19P13.3) MUTATED" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-EF-5830                     TCGA-EF-5831 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-EI-6506                     TCGA-EI-6507 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"DEL PEAK 30(19P13.3) WILD-TYPE"   "DEL PEAK 30(19P13.3) MUTATED" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-EI-6512                     TCGA-EI-6513 
"DEL PEAK 30(19P13.3) WILD-TYPE"   "DEL PEAK 30(19P13.3) MUTATED" 
                    TCGA-EI-6514                     TCGA-EI-6881 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-EI-6884                     TCGA-EI-6885 
"DEL PEAK 30(19P13.3) WILD-TYPE"   "DEL PEAK 30(19P13.3) MUTATED" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-EI-7004                     TCGA-F5-6465 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-F5-6571                     TCGA-F5-6702 
  "DEL PEAK 30(19P13.3) MUTATED"   "DEL PEAK 30(19P13.3) MUTATED" 
                    TCGA-F5-6810                     TCGA-F5-6811 
  "DEL PEAK 30(19P13.3) MUTATED" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-F5-6812                     TCGA-F5-6813 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-G5-6233                     TCGA-G5-6235 
  "DEL PEAK 30(19P13.3) MUTATED" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
[1] "hr=" "1.5"
D55V2, continuous
                                vv
clus                             STAGE I STAGE II STAGE IIA STAGE IIB STAGE IIC
  DEL PEAK 30(19P13.3) MUTATED         5        3         8         0         1
  DEL PEAK 30(19P13.3) WILD-TYPE      25        5        30         2         1
                                vv
clus                             STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  DEL PEAK 30(19P13.3) MUTATED           1          2          4          3
  DEL PEAK 30(19P13.3) WILD-TYPE         4          7         19         11
                                vv
clus                             STAGE IV STAGE IVA
  DEL PEAK 30(19P13.3) MUTATED          5         4
  DEL PEAK 30(19P13.3) WILD-TYPE       12         5
D55V3, multiclass
                                vv
clus                             T1 T2 T3 T4
  DEL PEAK 30(19P13.3) MUTATED    0  6 28  2
  DEL PEAK 30(19P13.3) WILD-TYPE  9 23 81 12
D55V4, multiclass
    clus
vv   DEL PEAK 30(19P13.3) MUTATED DEL PEAK 30(19P13.3) WILD-TYPE
  T1                            0                              9
  T2                            6                             23
  T3                           28                             81
  T4                            2                             12
                                vv
clus                             N0 N1 N2
  DEL PEAK 30(19P13.3) MUTATED   16 12  8
  DEL PEAK 30(19P13.3) WILD-TYPE 67 33 24
D55V5, multiclass
    clus
vv   DEL PEAK 30(19P13.3) MUTATED DEL PEAK 30(19P13.3) WILD-TYPE
  N0                           16                             67
  N1                           12                             33
  N2                            8                             24
                                vv
clus                             M0 M1 M1A MX
  DEL PEAK 30(19P13.3) MUTATED   27  8   0  1
  DEL PEAK 30(19P13.3) WILD-TYPE 96 14   2 12
D55V6, multiclass
     clus
vv    DEL PEAK 30(19P13.3) MUTATED DEL PEAK 30(19P13.3) WILD-TYPE
  M0                            27                             96
  M1                             8                             14
  M1A                            0                              2
  MX                             1                             12
D55V7, binary
                                cls
clus                              0  1
  DEL PEAK 30(19P13.3) MUTATED   16 20
  DEL PEAK 30(19P13.3) WILD-TYPE 58 68
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 30(19P13.3) MUTATED     16   20
  DEL PEAK 30(19P13.3) WILD-TYPE   58   68
        clus
vv       DEL PEAK 30(19P13.3) MUTATED DEL PEAK 30(19P13.3) WILD-TYPE
  FEMALE                           16                             58
  MALE                             20                             68
D55V8, binary
                                cls
clus                               0   1
  DEL PEAK 30(19P13.3) MUTATED    33   1
  DEL PEAK 30(19P13.3) WILD-TYPE 110  12
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 30(19P13.3) MUTATED     33    1
  DEL PEAK 30(19P13.3) WILD-TYPE  110   12
                                clus
vv                               DEL PEAK 30(19P13.3) MUTATED
  RECTAL ADENOCARCINOMA                                    33
  RECTAL MUCINOUS ADENOCARCINOMA                            1
                                clus
vv                               DEL PEAK 30(19P13.3) WILD-TYPE
  RECTAL ADENOCARCINOMA                                     110
  RECTAL MUCINOUS ADENOCARCINOMA                             12
D55V9, binary
                                cls
clus                               0   1
  DEL PEAK 30(19P13.3) MUTATED     1  35
  DEL PEAK 30(19P13.3) WILD-TYPE   5 121
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 30(19P13.3) MUTATED      1   35
  DEL PEAK 30(19P13.3) WILD-TYPE    5  121
     clus
vv    DEL PEAK 30(19P13.3) MUTATED DEL PEAK 30(19P13.3) WILD-TYPE
  NO                             1                              5
  YES                           35                            121
                                vv
clus                             R0 R1 R2 RX
  DEL PEAK 30(19P13.3) MUTATED   24  0  3  1
  DEL PEAK 30(19P13.3) WILD-TYPE 97  2  9  2
D55V10, multiclass
    clus
vv   DEL PEAK 30(19P13.3) MUTATED DEL PEAK 30(19P13.3) WILD-TYPE
  R0                           24                             97
  R1                            0                              2
  R2                            3                              9
  RX                            1                              2
D55V11, continuous

Clustering(56) Variable = DEL PEAK 31(20P12.1) MUTATION ANALYSIS
D56V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 31(20P12.1) MUTATED   38  8
  DEL PEAK 31(20P12.1) WILD-TYPE 79  5
  DEL PEAK 31(20P12.1) MUTATED DEL PEAK 31(20P12.1) WILD-TYPE 
                            46                             84 
  DEL PEAK 31(20P12.1) MUTATED DEL PEAK 31(20P12.1) WILD-TYPE 
                             8                              5 
$`DEL PEAK 31(20P12.1) MUTATED`
TCGA-AF-2689 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3726 
       17.95        10.39         1.02         1.02         2.01         7.96 
TCGA-AG-3727 TCGA-AG-3742 TCGA-AG-3883 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4022 
        0.95         0.99         1.02         1.02         1.02         0.99 
TCGA-AG-A008 TCGA-AG-A014 TCGA-AG-A01J TCGA-AG-A01L TCGA-AG-A01N TCGA-AG-A01W 
       13.91        15.91         1.02        12.00        12.00        70.03 
TCGA-AG-A01Y TCGA-AG-A026 TCGA-AG-A02G TCGA-AH-6547 TCGA-AH-6643 TCGA-CI-6624 
       63.98         1.94        38.93         1.45         0.69         4.70 
TCGA-CL-5917 TCGA-DC-4745 TCGA-DC-6154 TCGA-DC-6158 TCGA-DC-6160 TCGA-DC-6682 
       60.00        10.98        12.00         6.97        30.05        13.02 
TCGA-DC-6683 TCGA-DY-A1DC TCGA-DY-A1DD TCGA-DY-A1DF TCGA-DY-A1H8 TCGA-EF-5831 
       10.06        41.33        57.24        24.13        32.58         2.40 
TCGA-EI-6511 TCGA-EI-6512 TCGA-EI-6881 TCGA-EI-6883 TCGA-EI-6884 TCGA-EI-7004 
       15.85        17.69        16.37        11.51        10.78         8.45 
TCGA-F5-6571 TCGA-F5-6702 TCGA-F5-6864 TCGA-G5-6641 
        0.85         2.17         0.46        26.43 

$`DEL PEAK 31(20P12.1) WILD-TYPE`
TCGA-AF-2687 TCGA-AF-2690 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-2693 TCGA-AF-3400 
       24.13        17.23        10.62        13.55        19.10        12.72 
TCGA-AF-3911 TCGA-AF-4110 TCGA-AF-5654 TCGA-AF-6136 TCGA-AF-6655 TCGA-AF-6672 
       25.02        14.50         8.45        15.35        11.67        10.39 
TCGA-AG-3575 TCGA-AG-3586 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3605 TCGA-AG-3731 
       12.00         1.02         1.02         0.99         0.99         1.02 
TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3896 
        0.99         0.92         1.02         0.99         0.99         1.02 
TCGA-AG-3999 TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y 
        1.02         1.02        20.94         6.02        25.94        23.01 
TCGA-AG-A011 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A020 TCGA-AG-A023 TCGA-AG-A025 
       17.03        13.02         1.02        10.98        51.98        49.94 
TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AH-6544 TCGA-AH-6644 TCGA-AH-6897 
       61.94        40.96        38.01         0.49         0.72         4.60 
TCGA-AH-6903 TCGA-BM-6198 TCGA-CI-6619 TCGA-CI-6620 TCGA-CI-6622 TCGA-CI-6623 
        1.81        10.19         6.02         6.02         6.94         9.37 
TCGA-CL-4957 TCGA-CL-5918 TCGA-DC-4749 TCGA-DC-5337 TCGA-DC-5869 TCGA-DC-6155 
       13.97         7.99        11.01        15.02        12.99        14.01 
TCGA-DC-6156 TCGA-DC-6157 TCGA-DC-6681 TCGA-DT-5265 TCGA-DY-A0XA TCGA-DY-A1DE 
       15.02        36.00        12.95         5.29       126.41       129.27 
TCGA-DY-A1DG TCGA-EF-5830 TCGA-EI-6506 TCGA-EI-6507 TCGA-EI-6508 TCGA-EI-6509 
       51.48         0.49        20.55        19.96        20.91        17.00 
TCGA-EI-6510 TCGA-EI-6513 TCGA-EI-6514 TCGA-EI-6882 TCGA-EI-6885 TCGA-EI-6917 
       18.28        16.34        16.31         8.61        13.61        17.46 
TCGA-EI-7002 TCGA-F5-6465 TCGA-F5-6810 TCGA-F5-6811 TCGA-F5-6812 TCGA-F5-6813 
       11.97         3.39         0.39         1.02         0.66         0.69 
TCGA-F5-6814 TCGA-F5-6861 TCGA-F5-6863 TCGA-G5-6233 TCGA-G5-6235 TCGA-G5-6572 
        0.53         1.08         0.76        18.25        55.76        47.08 

  DEL PEAK 31(20P12.1) MUTATED DEL PEAK 31(20P12.1) WILD-TYPE 
                          0.46                           0.39 
  DEL PEAK 31(20P12.1) MUTATED DEL PEAK 31(20P12.1) WILD-TYPE 
                         70.03                         129.27 
  DEL PEAK 31(20P12.1) MUTATED DEL PEAK 31(20P12.1) WILD-TYPE 
                        10.585                         11.820 
[1] "0.5 - 70.0 (10.6)"  "0.4 - 129.3 (11.8)"
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK 31(20P12.1) WILD-TYPE"   "DEL PEAK 31(20P12.1) MUTATED" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 31(20P12.1) WILD-TYPE" "DEL PEAK 31(20P12.1) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"DEL PEAK 31(20P12.1) WILD-TYPE" "DEL PEAK 31(20P12.1) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK 31(20P12.1) WILD-TYPE" "DEL PEAK 31(20P12.1) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
  "DEL PEAK 31(20P12.1) MUTATED" "DEL PEAK 31(20P12.1) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 31(20P12.1) WILD-TYPE" "DEL PEAK 31(20P12.1) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 31(20P12.1) WILD-TYPE" "DEL PEAK 31(20P12.1) WILD-TYPE" 
                    TCGA-AG-3575                     TCGA-AG-3581 
"DEL PEAK 31(20P12.1) WILD-TYPE"   "DEL PEAK 31(20P12.1) MUTATED" 
                    TCGA-AG-3582                     TCGA-AG-3583 
  "DEL PEAK 31(20P12.1) MUTATED"   "DEL PEAK 31(20P12.1) MUTATED" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"DEL PEAK 31(20P12.1) WILD-TYPE" "DEL PEAK 31(20P12.1) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"DEL PEAK 31(20P12.1) WILD-TYPE" "DEL PEAK 31(20P12.1) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
  "DEL PEAK 31(20P12.1) MUTATED"   "DEL PEAK 31(20P12.1) MUTATED" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"DEL PEAK 31(20P12.1) WILD-TYPE"   "DEL PEAK 31(20P12.1) MUTATED" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"DEL PEAK 31(20P12.1) WILD-TYPE"   "DEL PEAK 31(20P12.1) MUTATED" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 31(20P12.1) WILD-TYPE" "DEL PEAK 31(20P12.1) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK 31(20P12.1) WILD-TYPE" "DEL PEAK 31(20P12.1) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
"DEL PEAK 31(20P12.1) WILD-TYPE" "DEL PEAK 31(20P12.1) WILD-TYPE" 
                    TCGA-AG-4001                     TCGA-AG-4007 
  "DEL PEAK 31(20P12.1) MUTATED"   "DEL PEAK 31(20P12.1) MUTATED" 
                    TCGA-AG-4008                     TCGA-AG-4022 
"DEL PEAK 31(20P12.1) WILD-TYPE"   "DEL PEAK 31(20P12.1) MUTATED" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"DEL PEAK 31(20P12.1) WILD-TYPE"   "DEL PEAK 31(20P12.1) MUTATED" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
"DEL PEAK 31(20P12.1) WILD-TYPE" "DEL PEAK 31(20P12.1) WILD-TYPE" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
"DEL PEAK 31(20P12.1) WILD-TYPE" "DEL PEAK 31(20P12.1) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
  "DEL PEAK 31(20P12.1) MUTATED" "DEL PEAK 31(20P12.1) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
"DEL PEAK 31(20P12.1) WILD-TYPE"   "DEL PEAK 31(20P12.1) MUTATED" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
  "DEL PEAK 31(20P12.1) MUTATED"   "DEL PEAK 31(20P12.1) MUTATED" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
  "DEL PEAK 31(20P12.1) MUTATED"   "DEL PEAK 31(20P12.1) MUTATED" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"DEL PEAK 31(20P12.1) WILD-TYPE" "DEL PEAK 31(20P12.1) WILD-TYPE" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"DEL PEAK 31(20P12.1) WILD-TYPE"   "DEL PEAK 31(20P12.1) MUTATED" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
  "DEL PEAK 31(20P12.1) MUTATED" "DEL PEAK 31(20P12.1) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
"DEL PEAK 31(20P12.1) WILD-TYPE" "DEL PEAK 31(20P12.1) WILD-TYPE" 
                    TCGA-AH-6544                     TCGA-AH-6547 
"DEL PEAK 31(20P12.1) WILD-TYPE"   "DEL PEAK 31(20P12.1) MUTATED" 
                    TCGA-AH-6643                     TCGA-AH-6644 
  "DEL PEAK 31(20P12.1) MUTATED" "DEL PEAK 31(20P12.1) WILD-TYPE" 
                    TCGA-AH-6897                     TCGA-AH-6903 
"DEL PEAK 31(20P12.1) WILD-TYPE" "DEL PEAK 31(20P12.1) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
"DEL PEAK 31(20P12.1) WILD-TYPE" "DEL PEAK 31(20P12.1) WILD-TYPE" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"DEL PEAK 31(20P12.1) WILD-TYPE" "DEL PEAK 31(20P12.1) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
"DEL PEAK 31(20P12.1) WILD-TYPE"   "DEL PEAK 31(20P12.1) MUTATED" 
                    TCGA-CL-4957                     TCGA-CL-5917 
"DEL PEAK 31(20P12.1) WILD-TYPE"   "DEL PEAK 31(20P12.1) MUTATED" 
                    TCGA-CL-5918                     TCGA-DC-4745 
"DEL PEAK 31(20P12.1) WILD-TYPE"   "DEL PEAK 31(20P12.1) MUTATED" 
                    TCGA-DC-4749                     TCGA-DC-5337 
"DEL PEAK 31(20P12.1) WILD-TYPE" "DEL PEAK 31(20P12.1) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
"DEL PEAK 31(20P12.1) WILD-TYPE"   "DEL PEAK 31(20P12.1) MUTATED" 
                    TCGA-DC-6155                     TCGA-DC-6156 
"DEL PEAK 31(20P12.1) WILD-TYPE" "DEL PEAK 31(20P12.1) WILD-TYPE" 
                    TCGA-DC-6157                     TCGA-DC-6158 
"DEL PEAK 31(20P12.1) WILD-TYPE"   "DEL PEAK 31(20P12.1) MUTATED" 
                    TCGA-DC-6160                     TCGA-DC-6681 
  "DEL PEAK 31(20P12.1) MUTATED" "DEL PEAK 31(20P12.1) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
  "DEL PEAK 31(20P12.1) MUTATED"   "DEL PEAK 31(20P12.1) MUTATED" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"DEL PEAK 31(20P12.1) WILD-TYPE" "DEL PEAK 31(20P12.1) WILD-TYPE" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
  "DEL PEAK 31(20P12.1) MUTATED"   "DEL PEAK 31(20P12.1) MUTATED" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
"DEL PEAK 31(20P12.1) WILD-TYPE"   "DEL PEAK 31(20P12.1) MUTATED" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
"DEL PEAK 31(20P12.1) WILD-TYPE"   "DEL PEAK 31(20P12.1) MUTATED" 
                    TCGA-EF-5830                     TCGA-EF-5831 
"DEL PEAK 31(20P12.1) WILD-TYPE"   "DEL PEAK 31(20P12.1) MUTATED" 
                    TCGA-EI-6506                     TCGA-EI-6507 
"DEL PEAK 31(20P12.1) WILD-TYPE" "DEL PEAK 31(20P12.1) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"DEL PEAK 31(20P12.1) WILD-TYPE" "DEL PEAK 31(20P12.1) WILD-TYPE" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"DEL PEAK 31(20P12.1) WILD-TYPE"   "DEL PEAK 31(20P12.1) MUTATED" 
                    TCGA-EI-6512                     TCGA-EI-6513 
  "DEL PEAK 31(20P12.1) MUTATED" "DEL PEAK 31(20P12.1) WILD-TYPE" 
                    TCGA-EI-6514                     TCGA-EI-6881 
"DEL PEAK 31(20P12.1) WILD-TYPE"   "DEL PEAK 31(20P12.1) MUTATED" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"DEL PEAK 31(20P12.1) WILD-TYPE"   "DEL PEAK 31(20P12.1) MUTATED" 
                    TCGA-EI-6884                     TCGA-EI-6885 
  "DEL PEAK 31(20P12.1) MUTATED" "DEL PEAK 31(20P12.1) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"DEL PEAK 31(20P12.1) WILD-TYPE" "DEL PEAK 31(20P12.1) WILD-TYPE" 
                    TCGA-EI-7004                     TCGA-F5-6465 
  "DEL PEAK 31(20P12.1) MUTATED" "DEL PEAK 31(20P12.1) WILD-TYPE" 
                    TCGA-F5-6571                     TCGA-F5-6702 
  "DEL PEAK 31(20P12.1) MUTATED"   "DEL PEAK 31(20P12.1) MUTATED" 
                    TCGA-F5-6810                     TCGA-F5-6811 
"DEL PEAK 31(20P12.1) WILD-TYPE" "DEL PEAK 31(20P12.1) WILD-TYPE" 
                    TCGA-F5-6812                     TCGA-F5-6813 
"DEL PEAK 31(20P12.1) WILD-TYPE" "DEL PEAK 31(20P12.1) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"DEL PEAK 31(20P12.1) WILD-TYPE" "DEL PEAK 31(20P12.1) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
"DEL PEAK 31(20P12.1) WILD-TYPE"   "DEL PEAK 31(20P12.1) MUTATED" 
                    TCGA-G5-6233                     TCGA-G5-6235 
"DEL PEAK 31(20P12.1) WILD-TYPE" "DEL PEAK 31(20P12.1) WILD-TYPE" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"DEL PEAK 31(20P12.1) WILD-TYPE"   "DEL PEAK 31(20P12.1) MUTATED" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK 31(20P12.1) WILD-TYPE"   "DEL PEAK 31(20P12.1) MUTATED" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 31(20P12.1) WILD-TYPE" "DEL PEAK 31(20P12.1) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"DEL PEAK 31(20P12.1) WILD-TYPE" "DEL PEAK 31(20P12.1) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK 31(20P12.1) WILD-TYPE" "DEL PEAK 31(20P12.1) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
  "DEL PEAK 31(20P12.1) MUTATED" "DEL PEAK 31(20P12.1) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 31(20P12.1) WILD-TYPE" "DEL PEAK 31(20P12.1) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 31(20P12.1) WILD-TYPE" "DEL PEAK 31(20P12.1) WILD-TYPE" 
                    TCGA-AG-3575                     TCGA-AG-3581 
"DEL PEAK 31(20P12.1) WILD-TYPE"   "DEL PEAK 31(20P12.1) MUTATED" 
                    TCGA-AG-3582                     TCGA-AG-3583 
  "DEL PEAK 31(20P12.1) MUTATED"   "DEL PEAK 31(20P12.1) MUTATED" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"DEL PEAK 31(20P12.1) WILD-TYPE" "DEL PEAK 31(20P12.1) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"DEL PEAK 31(20P12.1) WILD-TYPE" "DEL PEAK 31(20P12.1) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
  "DEL PEAK 31(20P12.1) MUTATED"   "DEL PEAK 31(20P12.1) MUTATED" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"DEL PEAK 31(20P12.1) WILD-TYPE"   "DEL PEAK 31(20P12.1) MUTATED" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"DEL PEAK 31(20P12.1) WILD-TYPE"   "DEL PEAK 31(20P12.1) MUTATED" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 31(20P12.1) WILD-TYPE" "DEL PEAK 31(20P12.1) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK 31(20P12.1) WILD-TYPE" "DEL PEAK 31(20P12.1) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
"DEL PEAK 31(20P12.1) WILD-TYPE" "DEL PEAK 31(20P12.1) WILD-TYPE" 
                    TCGA-AG-4001                     TCGA-AG-4007 
  "DEL PEAK 31(20P12.1) MUTATED"   "DEL PEAK 31(20P12.1) MUTATED" 
                    TCGA-AG-4008                     TCGA-AG-4022 
"DEL PEAK 31(20P12.1) WILD-TYPE"   "DEL PEAK 31(20P12.1) MUTATED" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"DEL PEAK 31(20P12.1) WILD-TYPE"   "DEL PEAK 31(20P12.1) MUTATED" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
"DEL PEAK 31(20P12.1) WILD-TYPE" "DEL PEAK 31(20P12.1) WILD-TYPE" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
"DEL PEAK 31(20P12.1) WILD-TYPE" "DEL PEAK 31(20P12.1) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
  "DEL PEAK 31(20P12.1) MUTATED" "DEL PEAK 31(20P12.1) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
"DEL PEAK 31(20P12.1) WILD-TYPE"   "DEL PEAK 31(20P12.1) MUTATED" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
  "DEL PEAK 31(20P12.1) MUTATED"   "DEL PEAK 31(20P12.1) MUTATED" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
  "DEL PEAK 31(20P12.1) MUTATED"   "DEL PEAK 31(20P12.1) MUTATED" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"DEL PEAK 31(20P12.1) WILD-TYPE" "DEL PEAK 31(20P12.1) WILD-TYPE" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"DEL PEAK 31(20P12.1) WILD-TYPE"   "DEL PEAK 31(20P12.1) MUTATED" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
  "DEL PEAK 31(20P12.1) MUTATED" "DEL PEAK 31(20P12.1) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
"DEL PEAK 31(20P12.1) WILD-TYPE" "DEL PEAK 31(20P12.1) WILD-TYPE" 
                    TCGA-AH-6544                     TCGA-AH-6547 
"DEL PEAK 31(20P12.1) WILD-TYPE"   "DEL PEAK 31(20P12.1) MUTATED" 
                    TCGA-AH-6643                     TCGA-AH-6644 
  "DEL PEAK 31(20P12.1) MUTATED" "DEL PEAK 31(20P12.1) WILD-TYPE" 
                    TCGA-AH-6897                     TCGA-AH-6903 
"DEL PEAK 31(20P12.1) WILD-TYPE" "DEL PEAK 31(20P12.1) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
"DEL PEAK 31(20P12.1) WILD-TYPE" "DEL PEAK 31(20P12.1) WILD-TYPE" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"DEL PEAK 31(20P12.1) WILD-TYPE" "DEL PEAK 31(20P12.1) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
"DEL PEAK 31(20P12.1) WILD-TYPE"   "DEL PEAK 31(20P12.1) MUTATED" 
                    TCGA-CL-4957                     TCGA-CL-5917 
"DEL PEAK 31(20P12.1) WILD-TYPE"   "DEL PEAK 31(20P12.1) MUTATED" 
                    TCGA-CL-5918                     TCGA-DC-4745 
"DEL PEAK 31(20P12.1) WILD-TYPE"   "DEL PEAK 31(20P12.1) MUTATED" 
                    TCGA-DC-4749                     TCGA-DC-5337 
"DEL PEAK 31(20P12.1) WILD-TYPE" "DEL PEAK 31(20P12.1) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
"DEL PEAK 31(20P12.1) WILD-TYPE"   "DEL PEAK 31(20P12.1) MUTATED" 
                    TCGA-DC-6155                     TCGA-DC-6156 
"DEL PEAK 31(20P12.1) WILD-TYPE" "DEL PEAK 31(20P12.1) WILD-TYPE" 
                    TCGA-DC-6157                     TCGA-DC-6158 
"DEL PEAK 31(20P12.1) WILD-TYPE"   "DEL PEAK 31(20P12.1) MUTATED" 
                    TCGA-DC-6160                     TCGA-DC-6681 
  "DEL PEAK 31(20P12.1) MUTATED" "DEL PEAK 31(20P12.1) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
  "DEL PEAK 31(20P12.1) MUTATED"   "DEL PEAK 31(20P12.1) MUTATED" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"DEL PEAK 31(20P12.1) WILD-TYPE" "DEL PEAK 31(20P12.1) WILD-TYPE" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
  "DEL PEAK 31(20P12.1) MUTATED"   "DEL PEAK 31(20P12.1) MUTATED" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
"DEL PEAK 31(20P12.1) WILD-TYPE"   "DEL PEAK 31(20P12.1) MUTATED" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
"DEL PEAK 31(20P12.1) WILD-TYPE"   "DEL PEAK 31(20P12.1) MUTATED" 
                    TCGA-EF-5830                     TCGA-EF-5831 
"DEL PEAK 31(20P12.1) WILD-TYPE"   "DEL PEAK 31(20P12.1) MUTATED" 
                    TCGA-EI-6506                     TCGA-EI-6507 
"DEL PEAK 31(20P12.1) WILD-TYPE" "DEL PEAK 31(20P12.1) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"DEL PEAK 31(20P12.1) WILD-TYPE" "DEL PEAK 31(20P12.1) WILD-TYPE" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"DEL PEAK 31(20P12.1) WILD-TYPE"   "DEL PEAK 31(20P12.1) MUTATED" 
                    TCGA-EI-6512                     TCGA-EI-6513 
  "DEL PEAK 31(20P12.1) MUTATED" "DEL PEAK 31(20P12.1) WILD-TYPE" 
                    TCGA-EI-6514                     TCGA-EI-6881 
"DEL PEAK 31(20P12.1) WILD-TYPE"   "DEL PEAK 31(20P12.1) MUTATED" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"DEL PEAK 31(20P12.1) WILD-TYPE"   "DEL PEAK 31(20P12.1) MUTATED" 
                    TCGA-EI-6884                     TCGA-EI-6885 
  "DEL PEAK 31(20P12.1) MUTATED" "DEL PEAK 31(20P12.1) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"DEL PEAK 31(20P12.1) WILD-TYPE" "DEL PEAK 31(20P12.1) WILD-TYPE" 
                    TCGA-EI-7004                     TCGA-F5-6465 
  "DEL PEAK 31(20P12.1) MUTATED" "DEL PEAK 31(20P12.1) WILD-TYPE" 
                    TCGA-F5-6571                     TCGA-F5-6702 
  "DEL PEAK 31(20P12.1) MUTATED"   "DEL PEAK 31(20P12.1) MUTATED" 
                    TCGA-F5-6810                     TCGA-F5-6811 
"DEL PEAK 31(20P12.1) WILD-TYPE" "DEL PEAK 31(20P12.1) WILD-TYPE" 
                    TCGA-F5-6812                     TCGA-F5-6813 
"DEL PEAK 31(20P12.1) WILD-TYPE" "DEL PEAK 31(20P12.1) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"DEL PEAK 31(20P12.1) WILD-TYPE" "DEL PEAK 31(20P12.1) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
"DEL PEAK 31(20P12.1) WILD-TYPE"   "DEL PEAK 31(20P12.1) MUTATED" 
                    TCGA-G5-6233                     TCGA-G5-6235 
"DEL PEAK 31(20P12.1) WILD-TYPE" "DEL PEAK 31(20P12.1) WILD-TYPE" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"DEL PEAK 31(20P12.1) WILD-TYPE"   "DEL PEAK 31(20P12.1) MUTATED" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK 31(20P12.1) WILD-TYPE"   "DEL PEAK 31(20P12.1) MUTATED" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 31(20P12.1) WILD-TYPE" "DEL PEAK 31(20P12.1) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"DEL PEAK 31(20P12.1) WILD-TYPE" "DEL PEAK 31(20P12.1) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK 31(20P12.1) WILD-TYPE" "DEL PEAK 31(20P12.1) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
  "DEL PEAK 31(20P12.1) MUTATED" "DEL PEAK 31(20P12.1) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 31(20P12.1) WILD-TYPE" "DEL PEAK 31(20P12.1) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 31(20P12.1) WILD-TYPE" "DEL PEAK 31(20P12.1) WILD-TYPE" 
                    TCGA-AG-3575                     TCGA-AG-3581 
"DEL PEAK 31(20P12.1) WILD-TYPE"   "DEL PEAK 31(20P12.1) MUTATED" 
                    TCGA-AG-3582                     TCGA-AG-3583 
  "DEL PEAK 31(20P12.1) MUTATED"   "DEL PEAK 31(20P12.1) MUTATED" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"DEL PEAK 31(20P12.1) WILD-TYPE" "DEL PEAK 31(20P12.1) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"DEL PEAK 31(20P12.1) WILD-TYPE" "DEL PEAK 31(20P12.1) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
  "DEL PEAK 31(20P12.1) MUTATED"   "DEL PEAK 31(20P12.1) MUTATED" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"DEL PEAK 31(20P12.1) WILD-TYPE"   "DEL PEAK 31(20P12.1) MUTATED" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"DEL PEAK 31(20P12.1) WILD-TYPE"   "DEL PEAK 31(20P12.1) MUTATED" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 31(20P12.1) WILD-TYPE" "DEL PEAK 31(20P12.1) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK 31(20P12.1) WILD-TYPE" "DEL PEAK 31(20P12.1) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
"DEL PEAK 31(20P12.1) WILD-TYPE" "DEL PEAK 31(20P12.1) WILD-TYPE" 
                    TCGA-AG-4001                     TCGA-AG-4007 
  "DEL PEAK 31(20P12.1) MUTATED"   "DEL PEAK 31(20P12.1) MUTATED" 
                    TCGA-AG-4008                     TCGA-AG-4022 
"DEL PEAK 31(20P12.1) WILD-TYPE"   "DEL PEAK 31(20P12.1) MUTATED" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"DEL PEAK 31(20P12.1) WILD-TYPE"   "DEL PEAK 31(20P12.1) MUTATED" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
"DEL PEAK 31(20P12.1) WILD-TYPE" "DEL PEAK 31(20P12.1) WILD-TYPE" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
"DEL PEAK 31(20P12.1) WILD-TYPE" "DEL PEAK 31(20P12.1) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
  "DEL PEAK 31(20P12.1) MUTATED" "DEL PEAK 31(20P12.1) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
"DEL PEAK 31(20P12.1) WILD-TYPE"   "DEL PEAK 31(20P12.1) MUTATED" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
  "DEL PEAK 31(20P12.1) MUTATED"   "DEL PEAK 31(20P12.1) MUTATED" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
  "DEL PEAK 31(20P12.1) MUTATED"   "DEL PEAK 31(20P12.1) MUTATED" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"DEL PEAK 31(20P12.1) WILD-TYPE" "DEL PEAK 31(20P12.1) WILD-TYPE" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"DEL PEAK 31(20P12.1) WILD-TYPE"   "DEL PEAK 31(20P12.1) MUTATED" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
  "DEL PEAK 31(20P12.1) MUTATED" "DEL PEAK 31(20P12.1) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
"DEL PEAK 31(20P12.1) WILD-TYPE" "DEL PEAK 31(20P12.1) WILD-TYPE" 
                    TCGA-AH-6544                     TCGA-AH-6547 
"DEL PEAK 31(20P12.1) WILD-TYPE"   "DEL PEAK 31(20P12.1) MUTATED" 
                    TCGA-AH-6643                     TCGA-AH-6644 
  "DEL PEAK 31(20P12.1) MUTATED" "DEL PEAK 31(20P12.1) WILD-TYPE" 
                    TCGA-AH-6897                     TCGA-AH-6903 
"DEL PEAK 31(20P12.1) WILD-TYPE" "DEL PEAK 31(20P12.1) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
"DEL PEAK 31(20P12.1) WILD-TYPE" "DEL PEAK 31(20P12.1) WILD-TYPE" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"DEL PEAK 31(20P12.1) WILD-TYPE" "DEL PEAK 31(20P12.1) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
"DEL PEAK 31(20P12.1) WILD-TYPE"   "DEL PEAK 31(20P12.1) MUTATED" 
                    TCGA-CL-4957                     TCGA-CL-5917 
"DEL PEAK 31(20P12.1) WILD-TYPE"   "DEL PEAK 31(20P12.1) MUTATED" 
                    TCGA-CL-5918                     TCGA-DC-4745 
"DEL PEAK 31(20P12.1) WILD-TYPE"   "DEL PEAK 31(20P12.1) MUTATED" 
                    TCGA-DC-4749                     TCGA-DC-5337 
"DEL PEAK 31(20P12.1) WILD-TYPE" "DEL PEAK 31(20P12.1) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
"DEL PEAK 31(20P12.1) WILD-TYPE"   "DEL PEAK 31(20P12.1) MUTATED" 
                    TCGA-DC-6155                     TCGA-DC-6156 
"DEL PEAK 31(20P12.1) WILD-TYPE" "DEL PEAK 31(20P12.1) WILD-TYPE" 
                    TCGA-DC-6157                     TCGA-DC-6158 
"DEL PEAK 31(20P12.1) WILD-TYPE"   "DEL PEAK 31(20P12.1) MUTATED" 
                    TCGA-DC-6160                     TCGA-DC-6681 
  "DEL PEAK 31(20P12.1) MUTATED" "DEL PEAK 31(20P12.1) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
  "DEL PEAK 31(20P12.1) MUTATED"   "DEL PEAK 31(20P12.1) MUTATED" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"DEL PEAK 31(20P12.1) WILD-TYPE" "DEL PEAK 31(20P12.1) WILD-TYPE" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
  "DEL PEAK 31(20P12.1) MUTATED"   "DEL PEAK 31(20P12.1) MUTATED" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
"DEL PEAK 31(20P12.1) WILD-TYPE"   "DEL PEAK 31(20P12.1) MUTATED" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
"DEL PEAK 31(20P12.1) WILD-TYPE"   "DEL PEAK 31(20P12.1) MUTATED" 
                    TCGA-EF-5830                     TCGA-EF-5831 
"DEL PEAK 31(20P12.1) WILD-TYPE"   "DEL PEAK 31(20P12.1) MUTATED" 
                    TCGA-EI-6506                     TCGA-EI-6507 
"DEL PEAK 31(20P12.1) WILD-TYPE" "DEL PEAK 31(20P12.1) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"DEL PEAK 31(20P12.1) WILD-TYPE" "DEL PEAK 31(20P12.1) WILD-TYPE" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"DEL PEAK 31(20P12.1) WILD-TYPE"   "DEL PEAK 31(20P12.1) MUTATED" 
                    TCGA-EI-6512                     TCGA-EI-6513 
  "DEL PEAK 31(20P12.1) MUTATED" "DEL PEAK 31(20P12.1) WILD-TYPE" 
                    TCGA-EI-6514                     TCGA-EI-6881 
"DEL PEAK 31(20P12.1) WILD-TYPE"   "DEL PEAK 31(20P12.1) MUTATED" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"DEL PEAK 31(20P12.1) WILD-TYPE"   "DEL PEAK 31(20P12.1) MUTATED" 
                    TCGA-EI-6884                     TCGA-EI-6885 
  "DEL PEAK 31(20P12.1) MUTATED" "DEL PEAK 31(20P12.1) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"DEL PEAK 31(20P12.1) WILD-TYPE" "DEL PEAK 31(20P12.1) WILD-TYPE" 
                    TCGA-EI-7004                     TCGA-F5-6465 
  "DEL PEAK 31(20P12.1) MUTATED" "DEL PEAK 31(20P12.1) WILD-TYPE" 
                    TCGA-F5-6571                     TCGA-F5-6702 
  "DEL PEAK 31(20P12.1) MUTATED"   "DEL PEAK 31(20P12.1) MUTATED" 
                    TCGA-F5-6810                     TCGA-F5-6811 
"DEL PEAK 31(20P12.1) WILD-TYPE" "DEL PEAK 31(20P12.1) WILD-TYPE" 
                    TCGA-F5-6812                     TCGA-F5-6813 
"DEL PEAK 31(20P12.1) WILD-TYPE" "DEL PEAK 31(20P12.1) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"DEL PEAK 31(20P12.1) WILD-TYPE" "DEL PEAK 31(20P12.1) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
"DEL PEAK 31(20P12.1) WILD-TYPE"   "DEL PEAK 31(20P12.1) MUTATED" 
                    TCGA-G5-6233                     TCGA-G5-6235 
"DEL PEAK 31(20P12.1) WILD-TYPE" "DEL PEAK 31(20P12.1) WILD-TYPE" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"DEL PEAK 31(20P12.1) WILD-TYPE"   "DEL PEAK 31(20P12.1) MUTATED" 
[1] "hr=" "2.6"
D56V2, continuous
                                vv
clus                             STAGE I STAGE II STAGE IIA STAGE IIB STAGE IIC
  DEL PEAK 31(20P12.1) MUTATED         9        5        13         0         1
  DEL PEAK 31(20P12.1) WILD-TYPE      21        3        25         2         1
                                vv
clus                             STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  DEL PEAK 31(20P12.1) MUTATED           1          4          8          7
  DEL PEAK 31(20P12.1) WILD-TYPE         4          5         15          7
                                vv
clus                             STAGE IV STAGE IVA
  DEL PEAK 31(20P12.1) MUTATED          7         3
  DEL PEAK 31(20P12.1) WILD-TYPE       10         6
D56V3, multiclass
                                vv
clus                             T1 T2 T3 T4
  DEL PEAK 31(20P12.1) MUTATED    2 11 42  5
  DEL PEAK 31(20P12.1) WILD-TYPE  7 18 67  9
D56V4, multiclass
    clus
vv   DEL PEAK 31(20P12.1) MUTATED DEL PEAK 31(20P12.1) WILD-TYPE
  T1                            2                              7
  T2                           11                             18
  T3                           42                             67
  T4                            5                              9
                                vv
clus                             N0 N1 N2
  DEL PEAK 31(20P12.1) MUTATED   30 17 13
  DEL PEAK 31(20P12.1) WILD-TYPE 53 28 19
D56V5, multiclass
    clus
vv   DEL PEAK 31(20P12.1) MUTATED DEL PEAK 31(20P12.1) WILD-TYPE
  N0                           30                             53
  N1                           17                             28
  N2                           13                             19
                                vv
clus                             M0 M1 M1A MX
  DEL PEAK 31(20P12.1) MUTATED   47 10   0  3
  DEL PEAK 31(20P12.1) WILD-TYPE 76 12   2 10
D56V6, multiclass
     clus
vv    DEL PEAK 31(20P12.1) MUTATED DEL PEAK 31(20P12.1) WILD-TYPE
  M0                            47                             76
  M1                            10                             12
  M1A                            0                              2
  MX                             3                             10
D56V7, binary
                                cls
clus                              0  1
  DEL PEAK 31(20P12.1) MUTATED   31 29
  DEL PEAK 31(20P12.1) WILD-TYPE 43 59
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 31(20P12.1) MUTATED     31   29
  DEL PEAK 31(20P12.1) WILD-TYPE   43   59
        clus
vv       DEL PEAK 31(20P12.1) MUTATED DEL PEAK 31(20P12.1) WILD-TYPE
  FEMALE                           31                             43
  MALE                             29                             59
D56V8, binary
                                cls
clus                              0  1
  DEL PEAK 31(20P12.1) MUTATED   55  5
  DEL PEAK 31(20P12.1) WILD-TYPE 88  8
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 31(20P12.1) MUTATED     55    5
  DEL PEAK 31(20P12.1) WILD-TYPE   88    8
                                clus
vv                               DEL PEAK 31(20P12.1) MUTATED
  RECTAL ADENOCARCINOMA                                    55
  RECTAL MUCINOUS ADENOCARCINOMA                            5
                                clus
vv                               DEL PEAK 31(20P12.1) WILD-TYPE
  RECTAL ADENOCARCINOMA                                      88
  RECTAL MUCINOUS ADENOCARCINOMA                              8
D56V9, binary
                                cls
clus                              0  1
  DEL PEAK 31(20P12.1) MUTATED    0 60
  DEL PEAK 31(20P12.1) WILD-TYPE  6 96
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 31(20P12.1) MUTATED      0   60
  DEL PEAK 31(20P12.1) WILD-TYPE    6   96
     clus
vv    DEL PEAK 31(20P12.1) MUTATED DEL PEAK 31(20P12.1) WILD-TYPE
  NO                             0                              6
  YES                           60                             96
                                vv
clus                             R0 R1 R2 RX
  DEL PEAK 31(20P12.1) MUTATED   45  1  7  1
  DEL PEAK 31(20P12.1) WILD-TYPE 76  1  5  2
D56V10, multiclass
    clus
vv   DEL PEAK 31(20P12.1) MUTATED DEL PEAK 31(20P12.1) WILD-TYPE
  R0                           45                             76
  R1                            1                              1
  R2                            7                              5
  RX                            1                              2
D56V11, continuous

Clustering(57) Variable = DEL PEAK 32(20P12.1) MUTATION ANALYSIS
D57V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 32(20P12.1) MUTATED   38  8
  DEL PEAK 32(20P12.1) WILD-TYPE 79  5
  DEL PEAK 32(20P12.1) MUTATED DEL PEAK 32(20P12.1) WILD-TYPE 
                            46                             84 
  DEL PEAK 32(20P12.1) MUTATED DEL PEAK 32(20P12.1) WILD-TYPE 
                             8                              5 
$`DEL PEAK 32(20P12.1) MUTATED`
TCGA-AF-2689 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3726 
       17.95        10.39         1.02         1.02         2.01         7.96 
TCGA-AG-3727 TCGA-AG-3742 TCGA-AG-3883 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4022 
        0.95         0.99         1.02         1.02         1.02         0.99 
TCGA-AG-A008 TCGA-AG-A014 TCGA-AG-A01J TCGA-AG-A01L TCGA-AG-A01N TCGA-AG-A01W 
       13.91        15.91         1.02        12.00        12.00        70.03 
TCGA-AG-A01Y TCGA-AG-A026 TCGA-AG-A02G TCGA-AH-6547 TCGA-AH-6643 TCGA-CI-6624 
       63.98         1.94        38.93         1.45         0.69         4.70 
TCGA-CL-5917 TCGA-DC-4745 TCGA-DC-6154 TCGA-DC-6158 TCGA-DC-6160 TCGA-DC-6682 
       60.00        10.98        12.00         6.97        30.05        13.02 
TCGA-DC-6683 TCGA-DY-A1DC TCGA-DY-A1DD TCGA-DY-A1DF TCGA-DY-A1H8 TCGA-EF-5831 
       10.06        41.33        57.24        24.13        32.58         2.40 
TCGA-EI-6511 TCGA-EI-6512 TCGA-EI-6881 TCGA-EI-6883 TCGA-EI-6884 TCGA-EI-7004 
       15.85        17.69        16.37        11.51        10.78         8.45 
TCGA-F5-6571 TCGA-F5-6702 TCGA-F5-6864 TCGA-G5-6641 
        0.85         2.17         0.46        26.43 

$`DEL PEAK 32(20P12.1) WILD-TYPE`
TCGA-AF-2687 TCGA-AF-2690 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-2693 TCGA-AF-3400 
       24.13        17.23        10.62        13.55        19.10        12.72 
TCGA-AF-3911 TCGA-AF-4110 TCGA-AF-5654 TCGA-AF-6136 TCGA-AF-6655 TCGA-AF-6672 
       25.02        14.50         8.45        15.35        11.67        10.39 
TCGA-AG-3575 TCGA-AG-3586 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3605 TCGA-AG-3731 
       12.00         1.02         1.02         0.99         0.99         1.02 
TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3896 
        0.99         0.92         1.02         0.99         0.99         1.02 
TCGA-AG-3999 TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y 
        1.02         1.02        20.94         6.02        25.94        23.01 
TCGA-AG-A011 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A020 TCGA-AG-A023 TCGA-AG-A025 
       17.03        13.02         1.02        10.98        51.98        49.94 
TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AH-6544 TCGA-AH-6644 TCGA-AH-6897 
       61.94        40.96        38.01         0.49         0.72         4.60 
TCGA-AH-6903 TCGA-BM-6198 TCGA-CI-6619 TCGA-CI-6620 TCGA-CI-6622 TCGA-CI-6623 
        1.81        10.19         6.02         6.02         6.94         9.37 
TCGA-CL-4957 TCGA-CL-5918 TCGA-DC-4749 TCGA-DC-5337 TCGA-DC-5869 TCGA-DC-6155 
       13.97         7.99        11.01        15.02        12.99        14.01 
TCGA-DC-6156 TCGA-DC-6157 TCGA-DC-6681 TCGA-DT-5265 TCGA-DY-A0XA TCGA-DY-A1DE 
       15.02        36.00        12.95         5.29       126.41       129.27 
TCGA-DY-A1DG TCGA-EF-5830 TCGA-EI-6506 TCGA-EI-6507 TCGA-EI-6508 TCGA-EI-6509 
       51.48         0.49        20.55        19.96        20.91        17.00 
TCGA-EI-6510 TCGA-EI-6513 TCGA-EI-6514 TCGA-EI-6882 TCGA-EI-6885 TCGA-EI-6917 
       18.28        16.34        16.31         8.61        13.61        17.46 
TCGA-EI-7002 TCGA-F5-6465 TCGA-F5-6810 TCGA-F5-6811 TCGA-F5-6812 TCGA-F5-6813 
       11.97         3.39         0.39         1.02         0.66         0.69 
TCGA-F5-6814 TCGA-F5-6861 TCGA-F5-6863 TCGA-G5-6233 TCGA-G5-6235 TCGA-G5-6572 
        0.53         1.08         0.76        18.25        55.76        47.08 

  DEL PEAK 32(20P12.1) MUTATED DEL PEAK 32(20P12.1) WILD-TYPE 
                          0.46                           0.39 
  DEL PEAK 32(20P12.1) MUTATED DEL PEAK 32(20P12.1) WILD-TYPE 
                         70.03                         129.27 
  DEL PEAK 32(20P12.1) MUTATED DEL PEAK 32(20P12.1) WILD-TYPE 
                        10.585                         11.820 
[1] "0.5 - 70.0 (10.6)"  "0.4 - 129.3 (11.8)"
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK 32(20P12.1) WILD-TYPE"   "DEL PEAK 32(20P12.1) MUTATED" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 32(20P12.1) WILD-TYPE" "DEL PEAK 32(20P12.1) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"DEL PEAK 32(20P12.1) WILD-TYPE" "DEL PEAK 32(20P12.1) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK 32(20P12.1) WILD-TYPE" "DEL PEAK 32(20P12.1) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
  "DEL PEAK 32(20P12.1) MUTATED" "DEL PEAK 32(20P12.1) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 32(20P12.1) WILD-TYPE" "DEL PEAK 32(20P12.1) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 32(20P12.1) WILD-TYPE" "DEL PEAK 32(20P12.1) WILD-TYPE" 
                    TCGA-AG-3575                     TCGA-AG-3581 
"DEL PEAK 32(20P12.1) WILD-TYPE"   "DEL PEAK 32(20P12.1) MUTATED" 
                    TCGA-AG-3582                     TCGA-AG-3583 
  "DEL PEAK 32(20P12.1) MUTATED"   "DEL PEAK 32(20P12.1) MUTATED" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"DEL PEAK 32(20P12.1) WILD-TYPE" "DEL PEAK 32(20P12.1) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"DEL PEAK 32(20P12.1) WILD-TYPE" "DEL PEAK 32(20P12.1) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
  "DEL PEAK 32(20P12.1) MUTATED"   "DEL PEAK 32(20P12.1) MUTATED" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"DEL PEAK 32(20P12.1) WILD-TYPE"   "DEL PEAK 32(20P12.1) MUTATED" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"DEL PEAK 32(20P12.1) WILD-TYPE"   "DEL PEAK 32(20P12.1) MUTATED" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 32(20P12.1) WILD-TYPE" "DEL PEAK 32(20P12.1) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK 32(20P12.1) WILD-TYPE" "DEL PEAK 32(20P12.1) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
"DEL PEAK 32(20P12.1) WILD-TYPE" "DEL PEAK 32(20P12.1) WILD-TYPE" 
                    TCGA-AG-4001                     TCGA-AG-4007 
  "DEL PEAK 32(20P12.1) MUTATED"   "DEL PEAK 32(20P12.1) MUTATED" 
                    TCGA-AG-4008                     TCGA-AG-4022 
"DEL PEAK 32(20P12.1) WILD-TYPE"   "DEL PEAK 32(20P12.1) MUTATED" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"DEL PEAK 32(20P12.1) WILD-TYPE"   "DEL PEAK 32(20P12.1) MUTATED" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
"DEL PEAK 32(20P12.1) WILD-TYPE" "DEL PEAK 32(20P12.1) WILD-TYPE" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
"DEL PEAK 32(20P12.1) WILD-TYPE" "DEL PEAK 32(20P12.1) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
  "DEL PEAK 32(20P12.1) MUTATED" "DEL PEAK 32(20P12.1) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
"DEL PEAK 32(20P12.1) WILD-TYPE"   "DEL PEAK 32(20P12.1) MUTATED" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
  "DEL PEAK 32(20P12.1) MUTATED"   "DEL PEAK 32(20P12.1) MUTATED" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
  "DEL PEAK 32(20P12.1) MUTATED"   "DEL PEAK 32(20P12.1) MUTATED" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"DEL PEAK 32(20P12.1) WILD-TYPE" "DEL PEAK 32(20P12.1) WILD-TYPE" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"DEL PEAK 32(20P12.1) WILD-TYPE"   "DEL PEAK 32(20P12.1) MUTATED" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
  "DEL PEAK 32(20P12.1) MUTATED" "DEL PEAK 32(20P12.1) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
"DEL PEAK 32(20P12.1) WILD-TYPE" "DEL PEAK 32(20P12.1) WILD-TYPE" 
                    TCGA-AH-6544                     TCGA-AH-6547 
"DEL PEAK 32(20P12.1) WILD-TYPE"   "DEL PEAK 32(20P12.1) MUTATED" 
                    TCGA-AH-6643                     TCGA-AH-6644 
  "DEL PEAK 32(20P12.1) MUTATED" "DEL PEAK 32(20P12.1) WILD-TYPE" 
                    TCGA-AH-6897                     TCGA-AH-6903 
"DEL PEAK 32(20P12.1) WILD-TYPE" "DEL PEAK 32(20P12.1) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
"DEL PEAK 32(20P12.1) WILD-TYPE" "DEL PEAK 32(20P12.1) WILD-TYPE" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"DEL PEAK 32(20P12.1) WILD-TYPE" "DEL PEAK 32(20P12.1) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
"DEL PEAK 32(20P12.1) WILD-TYPE"   "DEL PEAK 32(20P12.1) MUTATED" 
                    TCGA-CL-4957                     TCGA-CL-5917 
"DEL PEAK 32(20P12.1) WILD-TYPE"   "DEL PEAK 32(20P12.1) MUTATED" 
                    TCGA-CL-5918                     TCGA-DC-4745 
"DEL PEAK 32(20P12.1) WILD-TYPE"   "DEL PEAK 32(20P12.1) MUTATED" 
                    TCGA-DC-4749                     TCGA-DC-5337 
"DEL PEAK 32(20P12.1) WILD-TYPE" "DEL PEAK 32(20P12.1) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
"DEL PEAK 32(20P12.1) WILD-TYPE"   "DEL PEAK 32(20P12.1) MUTATED" 
                    TCGA-DC-6155                     TCGA-DC-6156 
"DEL PEAK 32(20P12.1) WILD-TYPE" "DEL PEAK 32(20P12.1) WILD-TYPE" 
                    TCGA-DC-6157                     TCGA-DC-6158 
"DEL PEAK 32(20P12.1) WILD-TYPE"   "DEL PEAK 32(20P12.1) MUTATED" 
                    TCGA-DC-6160                     TCGA-DC-6681 
  "DEL PEAK 32(20P12.1) MUTATED" "DEL PEAK 32(20P12.1) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
  "DEL PEAK 32(20P12.1) MUTATED"   "DEL PEAK 32(20P12.1) MUTATED" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"DEL PEAK 32(20P12.1) WILD-TYPE" "DEL PEAK 32(20P12.1) WILD-TYPE" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
  "DEL PEAK 32(20P12.1) MUTATED"   "DEL PEAK 32(20P12.1) MUTATED" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
"DEL PEAK 32(20P12.1) WILD-TYPE"   "DEL PEAK 32(20P12.1) MUTATED" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
"DEL PEAK 32(20P12.1) WILD-TYPE"   "DEL PEAK 32(20P12.1) MUTATED" 
                    TCGA-EF-5830                     TCGA-EF-5831 
"DEL PEAK 32(20P12.1) WILD-TYPE"   "DEL PEAK 32(20P12.1) MUTATED" 
                    TCGA-EI-6506                     TCGA-EI-6507 
"DEL PEAK 32(20P12.1) WILD-TYPE" "DEL PEAK 32(20P12.1) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"DEL PEAK 32(20P12.1) WILD-TYPE" "DEL PEAK 32(20P12.1) WILD-TYPE" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"DEL PEAK 32(20P12.1) WILD-TYPE"   "DEL PEAK 32(20P12.1) MUTATED" 
                    TCGA-EI-6512                     TCGA-EI-6513 
  "DEL PEAK 32(20P12.1) MUTATED" "DEL PEAK 32(20P12.1) WILD-TYPE" 
                    TCGA-EI-6514                     TCGA-EI-6881 
"DEL PEAK 32(20P12.1) WILD-TYPE"   "DEL PEAK 32(20P12.1) MUTATED" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"DEL PEAK 32(20P12.1) WILD-TYPE"   "DEL PEAK 32(20P12.1) MUTATED" 
                    TCGA-EI-6884                     TCGA-EI-6885 
  "DEL PEAK 32(20P12.1) MUTATED" "DEL PEAK 32(20P12.1) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"DEL PEAK 32(20P12.1) WILD-TYPE" "DEL PEAK 32(20P12.1) WILD-TYPE" 
                    TCGA-EI-7004                     TCGA-F5-6465 
  "DEL PEAK 32(20P12.1) MUTATED" "DEL PEAK 32(20P12.1) WILD-TYPE" 
                    TCGA-F5-6571                     TCGA-F5-6702 
  "DEL PEAK 32(20P12.1) MUTATED"   "DEL PEAK 32(20P12.1) MUTATED" 
                    TCGA-F5-6810                     TCGA-F5-6811 
"DEL PEAK 32(20P12.1) WILD-TYPE" "DEL PEAK 32(20P12.1) WILD-TYPE" 
                    TCGA-F5-6812                     TCGA-F5-6813 
"DEL PEAK 32(20P12.1) WILD-TYPE" "DEL PEAK 32(20P12.1) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"DEL PEAK 32(20P12.1) WILD-TYPE" "DEL PEAK 32(20P12.1) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
"DEL PEAK 32(20P12.1) WILD-TYPE"   "DEL PEAK 32(20P12.1) MUTATED" 
                    TCGA-G5-6233                     TCGA-G5-6235 
"DEL PEAK 32(20P12.1) WILD-TYPE" "DEL PEAK 32(20P12.1) WILD-TYPE" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"DEL PEAK 32(20P12.1) WILD-TYPE"   "DEL PEAK 32(20P12.1) MUTATED" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK 32(20P12.1) WILD-TYPE"   "DEL PEAK 32(20P12.1) MUTATED" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 32(20P12.1) WILD-TYPE" "DEL PEAK 32(20P12.1) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"DEL PEAK 32(20P12.1) WILD-TYPE" "DEL PEAK 32(20P12.1) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK 32(20P12.1) WILD-TYPE" "DEL PEAK 32(20P12.1) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
  "DEL PEAK 32(20P12.1) MUTATED" "DEL PEAK 32(20P12.1) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 32(20P12.1) WILD-TYPE" "DEL PEAK 32(20P12.1) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 32(20P12.1) WILD-TYPE" "DEL PEAK 32(20P12.1) WILD-TYPE" 
                    TCGA-AG-3575                     TCGA-AG-3581 
"DEL PEAK 32(20P12.1) WILD-TYPE"   "DEL PEAK 32(20P12.1) MUTATED" 
                    TCGA-AG-3582                     TCGA-AG-3583 
  "DEL PEAK 32(20P12.1) MUTATED"   "DEL PEAK 32(20P12.1) MUTATED" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"DEL PEAK 32(20P12.1) WILD-TYPE" "DEL PEAK 32(20P12.1) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"DEL PEAK 32(20P12.1) WILD-TYPE" "DEL PEAK 32(20P12.1) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
  "DEL PEAK 32(20P12.1) MUTATED"   "DEL PEAK 32(20P12.1) MUTATED" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"DEL PEAK 32(20P12.1) WILD-TYPE"   "DEL PEAK 32(20P12.1) MUTATED" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"DEL PEAK 32(20P12.1) WILD-TYPE"   "DEL PEAK 32(20P12.1) MUTATED" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 32(20P12.1) WILD-TYPE" "DEL PEAK 32(20P12.1) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK 32(20P12.1) WILD-TYPE" "DEL PEAK 32(20P12.1) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
"DEL PEAK 32(20P12.1) WILD-TYPE" "DEL PEAK 32(20P12.1) WILD-TYPE" 
                    TCGA-AG-4001                     TCGA-AG-4007 
  "DEL PEAK 32(20P12.1) MUTATED"   "DEL PEAK 32(20P12.1) MUTATED" 
                    TCGA-AG-4008                     TCGA-AG-4022 
"DEL PEAK 32(20P12.1) WILD-TYPE"   "DEL PEAK 32(20P12.1) MUTATED" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"DEL PEAK 32(20P12.1) WILD-TYPE"   "DEL PEAK 32(20P12.1) MUTATED" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
"DEL PEAK 32(20P12.1) WILD-TYPE" "DEL PEAK 32(20P12.1) WILD-TYPE" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
"DEL PEAK 32(20P12.1) WILD-TYPE" "DEL PEAK 32(20P12.1) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
  "DEL PEAK 32(20P12.1) MUTATED" "DEL PEAK 32(20P12.1) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
"DEL PEAK 32(20P12.1) WILD-TYPE"   "DEL PEAK 32(20P12.1) MUTATED" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
  "DEL PEAK 32(20P12.1) MUTATED"   "DEL PEAK 32(20P12.1) MUTATED" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
  "DEL PEAK 32(20P12.1) MUTATED"   "DEL PEAK 32(20P12.1) MUTATED" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"DEL PEAK 32(20P12.1) WILD-TYPE" "DEL PEAK 32(20P12.1) WILD-TYPE" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"DEL PEAK 32(20P12.1) WILD-TYPE"   "DEL PEAK 32(20P12.1) MUTATED" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
  "DEL PEAK 32(20P12.1) MUTATED" "DEL PEAK 32(20P12.1) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
"DEL PEAK 32(20P12.1) WILD-TYPE" "DEL PEAK 32(20P12.1) WILD-TYPE" 
                    TCGA-AH-6544                     TCGA-AH-6547 
"DEL PEAK 32(20P12.1) WILD-TYPE"   "DEL PEAK 32(20P12.1) MUTATED" 
                    TCGA-AH-6643                     TCGA-AH-6644 
  "DEL PEAK 32(20P12.1) MUTATED" "DEL PEAK 32(20P12.1) WILD-TYPE" 
                    TCGA-AH-6897                     TCGA-AH-6903 
"DEL PEAK 32(20P12.1) WILD-TYPE" "DEL PEAK 32(20P12.1) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
"DEL PEAK 32(20P12.1) WILD-TYPE" "DEL PEAK 32(20P12.1) WILD-TYPE" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"DEL PEAK 32(20P12.1) WILD-TYPE" "DEL PEAK 32(20P12.1) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
"DEL PEAK 32(20P12.1) WILD-TYPE"   "DEL PEAK 32(20P12.1) MUTATED" 
                    TCGA-CL-4957                     TCGA-CL-5917 
"DEL PEAK 32(20P12.1) WILD-TYPE"   "DEL PEAK 32(20P12.1) MUTATED" 
                    TCGA-CL-5918                     TCGA-DC-4745 
"DEL PEAK 32(20P12.1) WILD-TYPE"   "DEL PEAK 32(20P12.1) MUTATED" 
                    TCGA-DC-4749                     TCGA-DC-5337 
"DEL PEAK 32(20P12.1) WILD-TYPE" "DEL PEAK 32(20P12.1) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
"DEL PEAK 32(20P12.1) WILD-TYPE"   "DEL PEAK 32(20P12.1) MUTATED" 
                    TCGA-DC-6155                     TCGA-DC-6156 
"DEL PEAK 32(20P12.1) WILD-TYPE" "DEL PEAK 32(20P12.1) WILD-TYPE" 
                    TCGA-DC-6157                     TCGA-DC-6158 
"DEL PEAK 32(20P12.1) WILD-TYPE"   "DEL PEAK 32(20P12.1) MUTATED" 
                    TCGA-DC-6160                     TCGA-DC-6681 
  "DEL PEAK 32(20P12.1) MUTATED" "DEL PEAK 32(20P12.1) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
  "DEL PEAK 32(20P12.1) MUTATED"   "DEL PEAK 32(20P12.1) MUTATED" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"DEL PEAK 32(20P12.1) WILD-TYPE" "DEL PEAK 32(20P12.1) WILD-TYPE" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
  "DEL PEAK 32(20P12.1) MUTATED"   "DEL PEAK 32(20P12.1) MUTATED" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
"DEL PEAK 32(20P12.1) WILD-TYPE"   "DEL PEAK 32(20P12.1) MUTATED" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
"DEL PEAK 32(20P12.1) WILD-TYPE"   "DEL PEAK 32(20P12.1) MUTATED" 
                    TCGA-EF-5830                     TCGA-EF-5831 
"DEL PEAK 32(20P12.1) WILD-TYPE"   "DEL PEAK 32(20P12.1) MUTATED" 
                    TCGA-EI-6506                     TCGA-EI-6507 
"DEL PEAK 32(20P12.1) WILD-TYPE" "DEL PEAK 32(20P12.1) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"DEL PEAK 32(20P12.1) WILD-TYPE" "DEL PEAK 32(20P12.1) WILD-TYPE" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"DEL PEAK 32(20P12.1) WILD-TYPE"   "DEL PEAK 32(20P12.1) MUTATED" 
                    TCGA-EI-6512                     TCGA-EI-6513 
  "DEL PEAK 32(20P12.1) MUTATED" "DEL PEAK 32(20P12.1) WILD-TYPE" 
                    TCGA-EI-6514                     TCGA-EI-6881 
"DEL PEAK 32(20P12.1) WILD-TYPE"   "DEL PEAK 32(20P12.1) MUTATED" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"DEL PEAK 32(20P12.1) WILD-TYPE"   "DEL PEAK 32(20P12.1) MUTATED" 
                    TCGA-EI-6884                     TCGA-EI-6885 
  "DEL PEAK 32(20P12.1) MUTATED" "DEL PEAK 32(20P12.1) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"DEL PEAK 32(20P12.1) WILD-TYPE" "DEL PEAK 32(20P12.1) WILD-TYPE" 
                    TCGA-EI-7004                     TCGA-F5-6465 
  "DEL PEAK 32(20P12.1) MUTATED" "DEL PEAK 32(20P12.1) WILD-TYPE" 
                    TCGA-F5-6571                     TCGA-F5-6702 
  "DEL PEAK 32(20P12.1) MUTATED"   "DEL PEAK 32(20P12.1) MUTATED" 
                    TCGA-F5-6810                     TCGA-F5-6811 
"DEL PEAK 32(20P12.1) WILD-TYPE" "DEL PEAK 32(20P12.1) WILD-TYPE" 
                    TCGA-F5-6812                     TCGA-F5-6813 
"DEL PEAK 32(20P12.1) WILD-TYPE" "DEL PEAK 32(20P12.1) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"DEL PEAK 32(20P12.1) WILD-TYPE" "DEL PEAK 32(20P12.1) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
"DEL PEAK 32(20P12.1) WILD-TYPE"   "DEL PEAK 32(20P12.1) MUTATED" 
                    TCGA-G5-6233                     TCGA-G5-6235 
"DEL PEAK 32(20P12.1) WILD-TYPE" "DEL PEAK 32(20P12.1) WILD-TYPE" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"DEL PEAK 32(20P12.1) WILD-TYPE"   "DEL PEAK 32(20P12.1) MUTATED" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK 32(20P12.1) WILD-TYPE"   "DEL PEAK 32(20P12.1) MUTATED" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 32(20P12.1) WILD-TYPE" "DEL PEAK 32(20P12.1) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"DEL PEAK 32(20P12.1) WILD-TYPE" "DEL PEAK 32(20P12.1) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK 32(20P12.1) WILD-TYPE" "DEL PEAK 32(20P12.1) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
  "DEL PEAK 32(20P12.1) MUTATED" "DEL PEAK 32(20P12.1) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 32(20P12.1) WILD-TYPE" "DEL PEAK 32(20P12.1) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 32(20P12.1) WILD-TYPE" "DEL PEAK 32(20P12.1) WILD-TYPE" 
                    TCGA-AG-3575                     TCGA-AG-3581 
"DEL PEAK 32(20P12.1) WILD-TYPE"   "DEL PEAK 32(20P12.1) MUTATED" 
                    TCGA-AG-3582                     TCGA-AG-3583 
  "DEL PEAK 32(20P12.1) MUTATED"   "DEL PEAK 32(20P12.1) MUTATED" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"DEL PEAK 32(20P12.1) WILD-TYPE" "DEL PEAK 32(20P12.1) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"DEL PEAK 32(20P12.1) WILD-TYPE" "DEL PEAK 32(20P12.1) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
  "DEL PEAK 32(20P12.1) MUTATED"   "DEL PEAK 32(20P12.1) MUTATED" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"DEL PEAK 32(20P12.1) WILD-TYPE"   "DEL PEAK 32(20P12.1) MUTATED" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"DEL PEAK 32(20P12.1) WILD-TYPE"   "DEL PEAK 32(20P12.1) MUTATED" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 32(20P12.1) WILD-TYPE" "DEL PEAK 32(20P12.1) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK 32(20P12.1) WILD-TYPE" "DEL PEAK 32(20P12.1) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
"DEL PEAK 32(20P12.1) WILD-TYPE" "DEL PEAK 32(20P12.1) WILD-TYPE" 
                    TCGA-AG-4001                     TCGA-AG-4007 
  "DEL PEAK 32(20P12.1) MUTATED"   "DEL PEAK 32(20P12.1) MUTATED" 
                    TCGA-AG-4008                     TCGA-AG-4022 
"DEL PEAK 32(20P12.1) WILD-TYPE"   "DEL PEAK 32(20P12.1) MUTATED" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"DEL PEAK 32(20P12.1) WILD-TYPE"   "DEL PEAK 32(20P12.1) MUTATED" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
"DEL PEAK 32(20P12.1) WILD-TYPE" "DEL PEAK 32(20P12.1) WILD-TYPE" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
"DEL PEAK 32(20P12.1) WILD-TYPE" "DEL PEAK 32(20P12.1) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
  "DEL PEAK 32(20P12.1) MUTATED" "DEL PEAK 32(20P12.1) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
"DEL PEAK 32(20P12.1) WILD-TYPE"   "DEL PEAK 32(20P12.1) MUTATED" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
  "DEL PEAK 32(20P12.1) MUTATED"   "DEL PEAK 32(20P12.1) MUTATED" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
  "DEL PEAK 32(20P12.1) MUTATED"   "DEL PEAK 32(20P12.1) MUTATED" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"DEL PEAK 32(20P12.1) WILD-TYPE" "DEL PEAK 32(20P12.1) WILD-TYPE" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"DEL PEAK 32(20P12.1) WILD-TYPE"   "DEL PEAK 32(20P12.1) MUTATED" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
  "DEL PEAK 32(20P12.1) MUTATED" "DEL PEAK 32(20P12.1) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
"DEL PEAK 32(20P12.1) WILD-TYPE" "DEL PEAK 32(20P12.1) WILD-TYPE" 
                    TCGA-AH-6544                     TCGA-AH-6547 
"DEL PEAK 32(20P12.1) WILD-TYPE"   "DEL PEAK 32(20P12.1) MUTATED" 
                    TCGA-AH-6643                     TCGA-AH-6644 
  "DEL PEAK 32(20P12.1) MUTATED" "DEL PEAK 32(20P12.1) WILD-TYPE" 
                    TCGA-AH-6897                     TCGA-AH-6903 
"DEL PEAK 32(20P12.1) WILD-TYPE" "DEL PEAK 32(20P12.1) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
"DEL PEAK 32(20P12.1) WILD-TYPE" "DEL PEAK 32(20P12.1) WILD-TYPE" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"DEL PEAK 32(20P12.1) WILD-TYPE" "DEL PEAK 32(20P12.1) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
"DEL PEAK 32(20P12.1) WILD-TYPE"   "DEL PEAK 32(20P12.1) MUTATED" 
                    TCGA-CL-4957                     TCGA-CL-5917 
"DEL PEAK 32(20P12.1) WILD-TYPE"   "DEL PEAK 32(20P12.1) MUTATED" 
                    TCGA-CL-5918                     TCGA-DC-4745 
"DEL PEAK 32(20P12.1) WILD-TYPE"   "DEL PEAK 32(20P12.1) MUTATED" 
                    TCGA-DC-4749                     TCGA-DC-5337 
"DEL PEAK 32(20P12.1) WILD-TYPE" "DEL PEAK 32(20P12.1) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
"DEL PEAK 32(20P12.1) WILD-TYPE"   "DEL PEAK 32(20P12.1) MUTATED" 
                    TCGA-DC-6155                     TCGA-DC-6156 
"DEL PEAK 32(20P12.1) WILD-TYPE" "DEL PEAK 32(20P12.1) WILD-TYPE" 
                    TCGA-DC-6157                     TCGA-DC-6158 
"DEL PEAK 32(20P12.1) WILD-TYPE"   "DEL PEAK 32(20P12.1) MUTATED" 
                    TCGA-DC-6160                     TCGA-DC-6681 
  "DEL PEAK 32(20P12.1) MUTATED" "DEL PEAK 32(20P12.1) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
  "DEL PEAK 32(20P12.1) MUTATED"   "DEL PEAK 32(20P12.1) MUTATED" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"DEL PEAK 32(20P12.1) WILD-TYPE" "DEL PEAK 32(20P12.1) WILD-TYPE" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
  "DEL PEAK 32(20P12.1) MUTATED"   "DEL PEAK 32(20P12.1) MUTATED" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
"DEL PEAK 32(20P12.1) WILD-TYPE"   "DEL PEAK 32(20P12.1) MUTATED" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
"DEL PEAK 32(20P12.1) WILD-TYPE"   "DEL PEAK 32(20P12.1) MUTATED" 
                    TCGA-EF-5830                     TCGA-EF-5831 
"DEL PEAK 32(20P12.1) WILD-TYPE"   "DEL PEAK 32(20P12.1) MUTATED" 
                    TCGA-EI-6506                     TCGA-EI-6507 
"DEL PEAK 32(20P12.1) WILD-TYPE" "DEL PEAK 32(20P12.1) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"DEL PEAK 32(20P12.1) WILD-TYPE" "DEL PEAK 32(20P12.1) WILD-TYPE" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"DEL PEAK 32(20P12.1) WILD-TYPE"   "DEL PEAK 32(20P12.1) MUTATED" 
                    TCGA-EI-6512                     TCGA-EI-6513 
  "DEL PEAK 32(20P12.1) MUTATED" "DEL PEAK 32(20P12.1) WILD-TYPE" 
                    TCGA-EI-6514                     TCGA-EI-6881 
"DEL PEAK 32(20P12.1) WILD-TYPE"   "DEL PEAK 32(20P12.1) MUTATED" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"DEL PEAK 32(20P12.1) WILD-TYPE"   "DEL PEAK 32(20P12.1) MUTATED" 
                    TCGA-EI-6884                     TCGA-EI-6885 
  "DEL PEAK 32(20P12.1) MUTATED" "DEL PEAK 32(20P12.1) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"DEL PEAK 32(20P12.1) WILD-TYPE" "DEL PEAK 32(20P12.1) WILD-TYPE" 
                    TCGA-EI-7004                     TCGA-F5-6465 
  "DEL PEAK 32(20P12.1) MUTATED" "DEL PEAK 32(20P12.1) WILD-TYPE" 
                    TCGA-F5-6571                     TCGA-F5-6702 
  "DEL PEAK 32(20P12.1) MUTATED"   "DEL PEAK 32(20P12.1) MUTATED" 
                    TCGA-F5-6810                     TCGA-F5-6811 
"DEL PEAK 32(20P12.1) WILD-TYPE" "DEL PEAK 32(20P12.1) WILD-TYPE" 
                    TCGA-F5-6812                     TCGA-F5-6813 
"DEL PEAK 32(20P12.1) WILD-TYPE" "DEL PEAK 32(20P12.1) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"DEL PEAK 32(20P12.1) WILD-TYPE" "DEL PEAK 32(20P12.1) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
"DEL PEAK 32(20P12.1) WILD-TYPE"   "DEL PEAK 32(20P12.1) MUTATED" 
                    TCGA-G5-6233                     TCGA-G5-6235 
"DEL PEAK 32(20P12.1) WILD-TYPE" "DEL PEAK 32(20P12.1) WILD-TYPE" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"DEL PEAK 32(20P12.1) WILD-TYPE"   "DEL PEAK 32(20P12.1) MUTATED" 
[1] "hr=" "2.6"
D57V2, continuous
                                vv
clus                             STAGE I STAGE II STAGE IIA STAGE IIB STAGE IIC
  DEL PEAK 32(20P12.1) MUTATED         9        5        13         0         1
  DEL PEAK 32(20P12.1) WILD-TYPE      21        3        25         2         1
                                vv
clus                             STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  DEL PEAK 32(20P12.1) MUTATED           1          4          8          7
  DEL PEAK 32(20P12.1) WILD-TYPE         4          5         15          7
                                vv
clus                             STAGE IV STAGE IVA
  DEL PEAK 32(20P12.1) MUTATED          7         3
  DEL PEAK 32(20P12.1) WILD-TYPE       10         6
D57V3, multiclass
                                vv
clus                             T1 T2 T3 T4
  DEL PEAK 32(20P12.1) MUTATED    2 11 42  5
  DEL PEAK 32(20P12.1) WILD-TYPE  7 18 67  9
D57V4, multiclass
    clus
vv   DEL PEAK 32(20P12.1) MUTATED DEL PEAK 32(20P12.1) WILD-TYPE
  T1                            2                              7
  T2                           11                             18
  T3                           42                             67
  T4                            5                              9
                                vv
clus                             N0 N1 N2
  DEL PEAK 32(20P12.1) MUTATED   30 17 13
  DEL PEAK 32(20P12.1) WILD-TYPE 53 28 19
D57V5, multiclass
    clus
vv   DEL PEAK 32(20P12.1) MUTATED DEL PEAK 32(20P12.1) WILD-TYPE
  N0                           30                             53
  N1                           17                             28
  N2                           13                             19
                                vv
clus                             M0 M1 M1A MX
  DEL PEAK 32(20P12.1) MUTATED   47 10   0  3
  DEL PEAK 32(20P12.1) WILD-TYPE 76 12   2 10
D57V6, multiclass
     clus
vv    DEL PEAK 32(20P12.1) MUTATED DEL PEAK 32(20P12.1) WILD-TYPE
  M0                            47                             76
  M1                            10                             12
  M1A                            0                              2
  MX                             3                             10
D57V7, binary
                                cls
clus                              0  1
  DEL PEAK 32(20P12.1) MUTATED   31 29
  DEL PEAK 32(20P12.1) WILD-TYPE 43 59
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 32(20P12.1) MUTATED     31   29
  DEL PEAK 32(20P12.1) WILD-TYPE   43   59
        clus
vv       DEL PEAK 32(20P12.1) MUTATED DEL PEAK 32(20P12.1) WILD-TYPE
  FEMALE                           31                             43
  MALE                             29                             59
D57V8, binary
                                cls
clus                              0  1
  DEL PEAK 32(20P12.1) MUTATED   55  5
  DEL PEAK 32(20P12.1) WILD-TYPE 88  8
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 32(20P12.1) MUTATED     55    5
  DEL PEAK 32(20P12.1) WILD-TYPE   88    8
                                clus
vv                               DEL PEAK 32(20P12.1) MUTATED
  RECTAL ADENOCARCINOMA                                    55
  RECTAL MUCINOUS ADENOCARCINOMA                            5
                                clus
vv                               DEL PEAK 32(20P12.1) WILD-TYPE
  RECTAL ADENOCARCINOMA                                      88
  RECTAL MUCINOUS ADENOCARCINOMA                              8
D57V9, binary
                                cls
clus                              0  1
  DEL PEAK 32(20P12.1) MUTATED    0 60
  DEL PEAK 32(20P12.1) WILD-TYPE  6 96
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 32(20P12.1) MUTATED      0   60
  DEL PEAK 32(20P12.1) WILD-TYPE    6   96
     clus
vv    DEL PEAK 32(20P12.1) MUTATED DEL PEAK 32(20P12.1) WILD-TYPE
  NO                             0                              6
  YES                           60                             96
                                vv
clus                             R0 R1 R2 RX
  DEL PEAK 32(20P12.1) MUTATED   45  1  7  1
  DEL PEAK 32(20P12.1) WILD-TYPE 76  1  5  2
D57V10, multiclass
    clus
vv   DEL PEAK 32(20P12.1) MUTATED DEL PEAK 32(20P12.1) WILD-TYPE
  R0                           45                             76
  R1                            1                              1
  R2                            7                              5
  RX                            1                              2
D57V11, continuous

Clustering(58) Variable = DEL PEAK 33(21Q11.2) MUTATION ANALYSIS
D58V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 33(21Q11.2) MUTATED   49  8
  DEL PEAK 33(21Q11.2) WILD-TYPE 68  5
  DEL PEAK 33(21Q11.2) MUTATED DEL PEAK 33(21Q11.2) WILD-TYPE 
                            57                             73 
  DEL PEAK 33(21Q11.2) MUTATED DEL PEAK 33(21Q11.2) WILD-TYPE 
                             8                              5 
$`DEL PEAK 33(21Q11.2) MUTATED`
TCGA-AF-2687 TCGA-AF-2689 TCGA-AF-2690 TCGA-AF-2693 TCGA-AF-4110 TCGA-AF-6136 
       24.13        17.95        17.23        19.10        14.50        15.35 
TCGA-AF-6655 TCGA-AF-6672 TCGA-AG-3575 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3587 
       11.67        10.39        12.00         1.02         1.02         1.02 
TCGA-AG-3599 TCGA-AG-3896 TCGA-AG-4001 TCGA-AG-4008 TCGA-AG-A01L TCGA-AG-A01N 
        0.99         1.02         1.02         1.02        12.00        12.00 
TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N 
       70.03        63.98        10.98         1.94        38.93        61.94 
TCGA-AG-A02X TCGA-AH-6544 TCGA-AH-6643 TCGA-CI-6624 TCGA-CL-4957 TCGA-DC-4745 
       40.96         0.49         0.69         4.70        13.97        10.98 
TCGA-DC-6155 TCGA-DC-6157 TCGA-DC-6158 TCGA-DC-6682 TCGA-DC-6683 TCGA-DY-A0XA 
       14.01        36.00         6.97        13.02        10.06       126.41 
TCGA-DY-A1DD TCGA-DY-A1DG TCGA-DY-A1H8 TCGA-EF-5830 TCGA-EF-5831 TCGA-EI-6506 
       57.24        51.48        32.58         0.49         2.40        20.55 
TCGA-EI-6508 TCGA-EI-6511 TCGA-EI-6512 TCGA-EI-6513 TCGA-EI-6881 TCGA-EI-7002 
       20.91        15.85        17.69        16.34        16.37        11.97 
TCGA-EI-7004 TCGA-F5-6571 TCGA-F5-6810 TCGA-F5-6811 TCGA-F5-6812 TCGA-F5-6814 
        8.45         0.85         0.39         1.02         0.66         0.53 
TCGA-F5-6863 TCGA-G5-6233 TCGA-G5-6641 
        0.76        18.25        26.43 

$`DEL PEAK 33(21Q11.2) WILD-TYPE`
TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3911 TCGA-AF-3913 TCGA-AF-5654 
       10.62        13.55        12.72        25.02        10.39         8.45 
TCGA-AG-3583 TCGA-AG-3586 TCGA-AG-3605 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3731 
        2.01         1.02         0.99         7.96         0.95         1.02 
TCGA-AG-3742 TCGA-AG-3878 TCGA-AG-3883 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 
        0.99         0.99         1.02         0.92         1.02         0.99 
TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4007 TCGA-AG-4022 TCGA-AG-A002 TCGA-AG-A008 
        0.99         1.02         1.02         0.99        20.94        13.91 
TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 
        6.02        25.94        23.01        17.03        15.91        13.02 
TCGA-AG-A016 TCGA-AG-A01J TCGA-AG-A023 TCGA-AG-A025 TCGA-AG-A032 TCGA-AH-6547 
        1.02         1.02        51.98        49.94        38.01         1.45 
TCGA-AH-6644 TCGA-AH-6897 TCGA-AH-6903 TCGA-BM-6198 TCGA-CI-6619 TCGA-CI-6620 
        0.72         4.60         1.81        10.19         6.02         6.02 
TCGA-CI-6622 TCGA-CI-6623 TCGA-CL-5917 TCGA-CL-5918 TCGA-DC-4749 TCGA-DC-5337 
        6.94         9.37        60.00         7.99        11.01        15.02 
TCGA-DC-5869 TCGA-DC-6154 TCGA-DC-6156 TCGA-DC-6160 TCGA-DC-6681 TCGA-DT-5265 
       12.99        12.00        15.02        30.05        12.95         5.29 
TCGA-DY-A1DC TCGA-DY-A1DE TCGA-DY-A1DF TCGA-EI-6507 TCGA-EI-6509 TCGA-EI-6510 
       41.33       129.27        24.13        19.96        17.00        18.28 
TCGA-EI-6514 TCGA-EI-6882 TCGA-EI-6883 TCGA-EI-6884 TCGA-EI-6885 TCGA-EI-6917 
       16.31         8.61        11.51        10.78        13.61        17.46 
TCGA-F5-6465 TCGA-F5-6702 TCGA-F5-6813 TCGA-F5-6861 TCGA-F5-6864 TCGA-G5-6235 
        3.39         2.17         0.69         1.08         0.46        55.76 
TCGA-G5-6572 
       47.08 

  DEL PEAK 33(21Q11.2) MUTATED DEL PEAK 33(21Q11.2) WILD-TYPE 
                          0.39                           0.46 
  DEL PEAK 33(21Q11.2) MUTATED DEL PEAK 33(21Q11.2) WILD-TYPE 
                        126.41                         129.27 
  DEL PEAK 33(21Q11.2) MUTATED DEL PEAK 33(21Q11.2) WILD-TYPE 
                         12.00                          10.19 
[1] "0.4 - 126.4 (12.0)" "0.5 - 129.3 (10.2)"
                    TCGA-AF-2687                     TCGA-AF-2689 
  "DEL PEAK 33(21Q11.2) MUTATED"   "DEL PEAK 33(21Q11.2) MUTATED" 
                    TCGA-AF-2690                     TCGA-AF-2691 
  "DEL PEAK 33(21Q11.2) MUTATED" "DEL PEAK 33(21Q11.2) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"DEL PEAK 33(21Q11.2) WILD-TYPE"   "DEL PEAK 33(21Q11.2) MUTATED" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK 33(21Q11.2) WILD-TYPE" "DEL PEAK 33(21Q11.2) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 33(21Q11.2) WILD-TYPE"   "DEL PEAK 33(21Q11.2) MUTATED" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 33(21Q11.2) WILD-TYPE"   "DEL PEAK 33(21Q11.2) MUTATED" 
                    TCGA-AF-6655                     TCGA-AF-6672 
  "DEL PEAK 33(21Q11.2) MUTATED"   "DEL PEAK 33(21Q11.2) MUTATED" 
                    TCGA-AG-3575                     TCGA-AG-3581 
  "DEL PEAK 33(21Q11.2) MUTATED"   "DEL PEAK 33(21Q11.2) MUTATED" 
                    TCGA-AG-3582                     TCGA-AG-3583 
  "DEL PEAK 33(21Q11.2) MUTATED" "DEL PEAK 33(21Q11.2) WILD-TYPE" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"DEL PEAK 33(21Q11.2) WILD-TYPE"   "DEL PEAK 33(21Q11.2) MUTATED" 
                    TCGA-AG-3599                     TCGA-AG-3605 
  "DEL PEAK 33(21Q11.2) MUTATED" "DEL PEAK 33(21Q11.2) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
"DEL PEAK 33(21Q11.2) WILD-TYPE" "DEL PEAK 33(21Q11.2) WILD-TYPE" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"DEL PEAK 33(21Q11.2) WILD-TYPE" "DEL PEAK 33(21Q11.2) WILD-TYPE" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"DEL PEAK 33(21Q11.2) WILD-TYPE" "DEL PEAK 33(21Q11.2) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 33(21Q11.2) WILD-TYPE" "DEL PEAK 33(21Q11.2) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK 33(21Q11.2) WILD-TYPE" "DEL PEAK 33(21Q11.2) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
  "DEL PEAK 33(21Q11.2) MUTATED" "DEL PEAK 33(21Q11.2) WILD-TYPE" 
                    TCGA-AG-4001                     TCGA-AG-4007 
  "DEL PEAK 33(21Q11.2) MUTATED" "DEL PEAK 33(21Q11.2) WILD-TYPE" 
                    TCGA-AG-4008                     TCGA-AG-4022 
  "DEL PEAK 33(21Q11.2) MUTATED" "DEL PEAK 33(21Q11.2) WILD-TYPE" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"DEL PEAK 33(21Q11.2) WILD-TYPE" "DEL PEAK 33(21Q11.2) WILD-TYPE" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
"DEL PEAK 33(21Q11.2) WILD-TYPE" "DEL PEAK 33(21Q11.2) WILD-TYPE" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
"DEL PEAK 33(21Q11.2) WILD-TYPE" "DEL PEAK 33(21Q11.2) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
"DEL PEAK 33(21Q11.2) WILD-TYPE" "DEL PEAK 33(21Q11.2) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
"DEL PEAK 33(21Q11.2) WILD-TYPE" "DEL PEAK 33(21Q11.2) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
  "DEL PEAK 33(21Q11.2) MUTATED"   "DEL PEAK 33(21Q11.2) MUTATED" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
  "DEL PEAK 33(21Q11.2) MUTATED"   "DEL PEAK 33(21Q11.2) MUTATED" 
                    TCGA-AG-A020                     TCGA-AG-A023 
  "DEL PEAK 33(21Q11.2) MUTATED" "DEL PEAK 33(21Q11.2) WILD-TYPE" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"DEL PEAK 33(21Q11.2) WILD-TYPE"   "DEL PEAK 33(21Q11.2) MUTATED" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
  "DEL PEAK 33(21Q11.2) MUTATED"   "DEL PEAK 33(21Q11.2) MUTATED" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
  "DEL PEAK 33(21Q11.2) MUTATED" "DEL PEAK 33(21Q11.2) WILD-TYPE" 
                    TCGA-AH-6544                     TCGA-AH-6547 
  "DEL PEAK 33(21Q11.2) MUTATED" "DEL PEAK 33(21Q11.2) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
  "DEL PEAK 33(21Q11.2) MUTATED" "DEL PEAK 33(21Q11.2) WILD-TYPE" 
                    TCGA-AH-6897                     TCGA-AH-6903 
"DEL PEAK 33(21Q11.2) WILD-TYPE" "DEL PEAK 33(21Q11.2) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
"DEL PEAK 33(21Q11.2) WILD-TYPE" "DEL PEAK 33(21Q11.2) WILD-TYPE" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"DEL PEAK 33(21Q11.2) WILD-TYPE" "DEL PEAK 33(21Q11.2) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
"DEL PEAK 33(21Q11.2) WILD-TYPE"   "DEL PEAK 33(21Q11.2) MUTATED" 
                    TCGA-CL-4957                     TCGA-CL-5917 
  "DEL PEAK 33(21Q11.2) MUTATED" "DEL PEAK 33(21Q11.2) WILD-TYPE" 
                    TCGA-CL-5918                     TCGA-DC-4745 
"DEL PEAK 33(21Q11.2) WILD-TYPE"   "DEL PEAK 33(21Q11.2) MUTATED" 
                    TCGA-DC-4749                     TCGA-DC-5337 
"DEL PEAK 33(21Q11.2) WILD-TYPE" "DEL PEAK 33(21Q11.2) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
"DEL PEAK 33(21Q11.2) WILD-TYPE" "DEL PEAK 33(21Q11.2) WILD-TYPE" 
                    TCGA-DC-6155                     TCGA-DC-6156 
  "DEL PEAK 33(21Q11.2) MUTATED" "DEL PEAK 33(21Q11.2) WILD-TYPE" 
                    TCGA-DC-6157                     TCGA-DC-6158 
  "DEL PEAK 33(21Q11.2) MUTATED"   "DEL PEAK 33(21Q11.2) MUTATED" 
                    TCGA-DC-6160                     TCGA-DC-6681 
"DEL PEAK 33(21Q11.2) WILD-TYPE" "DEL PEAK 33(21Q11.2) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
  "DEL PEAK 33(21Q11.2) MUTATED"   "DEL PEAK 33(21Q11.2) MUTATED" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"DEL PEAK 33(21Q11.2) WILD-TYPE"   "DEL PEAK 33(21Q11.2) MUTATED" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
"DEL PEAK 33(21Q11.2) WILD-TYPE"   "DEL PEAK 33(21Q11.2) MUTATED" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
"DEL PEAK 33(21Q11.2) WILD-TYPE" "DEL PEAK 33(21Q11.2) WILD-TYPE" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
  "DEL PEAK 33(21Q11.2) MUTATED"   "DEL PEAK 33(21Q11.2) MUTATED" 
                    TCGA-EF-5830                     TCGA-EF-5831 
  "DEL PEAK 33(21Q11.2) MUTATED"   "DEL PEAK 33(21Q11.2) MUTATED" 
                    TCGA-EI-6506                     TCGA-EI-6507 
  "DEL PEAK 33(21Q11.2) MUTATED" "DEL PEAK 33(21Q11.2) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
  "DEL PEAK 33(21Q11.2) MUTATED" "DEL PEAK 33(21Q11.2) WILD-TYPE" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"DEL PEAK 33(21Q11.2) WILD-TYPE"   "DEL PEAK 33(21Q11.2) MUTATED" 
                    TCGA-EI-6512                     TCGA-EI-6513 
  "DEL PEAK 33(21Q11.2) MUTATED"   "DEL PEAK 33(21Q11.2) MUTATED" 
                    TCGA-EI-6514                     TCGA-EI-6881 
"DEL PEAK 33(21Q11.2) WILD-TYPE"   "DEL PEAK 33(21Q11.2) MUTATED" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"DEL PEAK 33(21Q11.2) WILD-TYPE" "DEL PEAK 33(21Q11.2) WILD-TYPE" 
                    TCGA-EI-6884                     TCGA-EI-6885 
"DEL PEAK 33(21Q11.2) WILD-TYPE" "DEL PEAK 33(21Q11.2) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"DEL PEAK 33(21Q11.2) WILD-TYPE"   "DEL PEAK 33(21Q11.2) MUTATED" 
                    TCGA-EI-7004                     TCGA-F5-6465 
  "DEL PEAK 33(21Q11.2) MUTATED" "DEL PEAK 33(21Q11.2) WILD-TYPE" 
                    TCGA-F5-6571                     TCGA-F5-6702 
  "DEL PEAK 33(21Q11.2) MUTATED" "DEL PEAK 33(21Q11.2) WILD-TYPE" 
                    TCGA-F5-6810                     TCGA-F5-6811 
  "DEL PEAK 33(21Q11.2) MUTATED"   "DEL PEAK 33(21Q11.2) MUTATED" 
                    TCGA-F5-6812                     TCGA-F5-6813 
  "DEL PEAK 33(21Q11.2) MUTATED" "DEL PEAK 33(21Q11.2) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
  "DEL PEAK 33(21Q11.2) MUTATED" "DEL PEAK 33(21Q11.2) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
  "DEL PEAK 33(21Q11.2) MUTATED" "DEL PEAK 33(21Q11.2) WILD-TYPE" 
                    TCGA-G5-6233                     TCGA-G5-6235 
  "DEL PEAK 33(21Q11.2) MUTATED" "DEL PEAK 33(21Q11.2) WILD-TYPE" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"DEL PEAK 33(21Q11.2) WILD-TYPE"   "DEL PEAK 33(21Q11.2) MUTATED" 
                    TCGA-AF-2687                     TCGA-AF-2689 
  "DEL PEAK 33(21Q11.2) MUTATED"   "DEL PEAK 33(21Q11.2) MUTATED" 
                    TCGA-AF-2690                     TCGA-AF-2691 
  "DEL PEAK 33(21Q11.2) MUTATED" "DEL PEAK 33(21Q11.2) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"DEL PEAK 33(21Q11.2) WILD-TYPE"   "DEL PEAK 33(21Q11.2) MUTATED" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK 33(21Q11.2) WILD-TYPE" "DEL PEAK 33(21Q11.2) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 33(21Q11.2) WILD-TYPE"   "DEL PEAK 33(21Q11.2) MUTATED" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 33(21Q11.2) WILD-TYPE"   "DEL PEAK 33(21Q11.2) MUTATED" 
                    TCGA-AF-6655                     TCGA-AF-6672 
  "DEL PEAK 33(21Q11.2) MUTATED"   "DEL PEAK 33(21Q11.2) MUTATED" 
                    TCGA-AG-3575                     TCGA-AG-3581 
  "DEL PEAK 33(21Q11.2) MUTATED"   "DEL PEAK 33(21Q11.2) MUTATED" 
                    TCGA-AG-3582                     TCGA-AG-3583 
  "DEL PEAK 33(21Q11.2) MUTATED" "DEL PEAK 33(21Q11.2) WILD-TYPE" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"DEL PEAK 33(21Q11.2) WILD-TYPE"   "DEL PEAK 33(21Q11.2) MUTATED" 
                    TCGA-AG-3599                     TCGA-AG-3605 
  "DEL PEAK 33(21Q11.2) MUTATED" "DEL PEAK 33(21Q11.2) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
"DEL PEAK 33(21Q11.2) WILD-TYPE" "DEL PEAK 33(21Q11.2) WILD-TYPE" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"DEL PEAK 33(21Q11.2) WILD-TYPE" "DEL PEAK 33(21Q11.2) WILD-TYPE" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"DEL PEAK 33(21Q11.2) WILD-TYPE" "DEL PEAK 33(21Q11.2) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 33(21Q11.2) WILD-TYPE" "DEL PEAK 33(21Q11.2) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK 33(21Q11.2) WILD-TYPE" "DEL PEAK 33(21Q11.2) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
  "DEL PEAK 33(21Q11.2) MUTATED" "DEL PEAK 33(21Q11.2) WILD-TYPE" 
                    TCGA-AG-4001                     TCGA-AG-4007 
  "DEL PEAK 33(21Q11.2) MUTATED" "DEL PEAK 33(21Q11.2) WILD-TYPE" 
                    TCGA-AG-4008                     TCGA-AG-4022 
  "DEL PEAK 33(21Q11.2) MUTATED" "DEL PEAK 33(21Q11.2) WILD-TYPE" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"DEL PEAK 33(21Q11.2) WILD-TYPE" "DEL PEAK 33(21Q11.2) WILD-TYPE" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
"DEL PEAK 33(21Q11.2) WILD-TYPE" "DEL PEAK 33(21Q11.2) WILD-TYPE" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
"DEL PEAK 33(21Q11.2) WILD-TYPE" "DEL PEAK 33(21Q11.2) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
"DEL PEAK 33(21Q11.2) WILD-TYPE" "DEL PEAK 33(21Q11.2) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
"DEL PEAK 33(21Q11.2) WILD-TYPE" "DEL PEAK 33(21Q11.2) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
  "DEL PEAK 33(21Q11.2) MUTATED"   "DEL PEAK 33(21Q11.2) MUTATED" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
  "DEL PEAK 33(21Q11.2) MUTATED"   "DEL PEAK 33(21Q11.2) MUTATED" 
                    TCGA-AG-A020                     TCGA-AG-A023 
  "DEL PEAK 33(21Q11.2) MUTATED" "DEL PEAK 33(21Q11.2) WILD-TYPE" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"DEL PEAK 33(21Q11.2) WILD-TYPE"   "DEL PEAK 33(21Q11.2) MUTATED" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
  "DEL PEAK 33(21Q11.2) MUTATED"   "DEL PEAK 33(21Q11.2) MUTATED" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
  "DEL PEAK 33(21Q11.2) MUTATED" "DEL PEAK 33(21Q11.2) WILD-TYPE" 
                    TCGA-AH-6544                     TCGA-AH-6547 
  "DEL PEAK 33(21Q11.2) MUTATED" "DEL PEAK 33(21Q11.2) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
  "DEL PEAK 33(21Q11.2) MUTATED" "DEL PEAK 33(21Q11.2) WILD-TYPE" 
                    TCGA-AH-6897                     TCGA-AH-6903 
"DEL PEAK 33(21Q11.2) WILD-TYPE" "DEL PEAK 33(21Q11.2) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
"DEL PEAK 33(21Q11.2) WILD-TYPE" "DEL PEAK 33(21Q11.2) WILD-TYPE" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"DEL PEAK 33(21Q11.2) WILD-TYPE" "DEL PEAK 33(21Q11.2) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
"DEL PEAK 33(21Q11.2) WILD-TYPE"   "DEL PEAK 33(21Q11.2) MUTATED" 
                    TCGA-CL-4957                     TCGA-CL-5917 
  "DEL PEAK 33(21Q11.2) MUTATED" "DEL PEAK 33(21Q11.2) WILD-TYPE" 
                    TCGA-CL-5918                     TCGA-DC-4745 
"DEL PEAK 33(21Q11.2) WILD-TYPE"   "DEL PEAK 33(21Q11.2) MUTATED" 
                    TCGA-DC-4749                     TCGA-DC-5337 
"DEL PEAK 33(21Q11.2) WILD-TYPE" "DEL PEAK 33(21Q11.2) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
"DEL PEAK 33(21Q11.2) WILD-TYPE" "DEL PEAK 33(21Q11.2) WILD-TYPE" 
                    TCGA-DC-6155                     TCGA-DC-6156 
  "DEL PEAK 33(21Q11.2) MUTATED" "DEL PEAK 33(21Q11.2) WILD-TYPE" 
                    TCGA-DC-6157                     TCGA-DC-6158 
  "DEL PEAK 33(21Q11.2) MUTATED"   "DEL PEAK 33(21Q11.2) MUTATED" 
                    TCGA-DC-6160                     TCGA-DC-6681 
"DEL PEAK 33(21Q11.2) WILD-TYPE" "DEL PEAK 33(21Q11.2) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
  "DEL PEAK 33(21Q11.2) MUTATED"   "DEL PEAK 33(21Q11.2) MUTATED" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"DEL PEAK 33(21Q11.2) WILD-TYPE"   "DEL PEAK 33(21Q11.2) MUTATED" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
"DEL PEAK 33(21Q11.2) WILD-TYPE"   "DEL PEAK 33(21Q11.2) MUTATED" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
"DEL PEAK 33(21Q11.2) WILD-TYPE" "DEL PEAK 33(21Q11.2) WILD-TYPE" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
  "DEL PEAK 33(21Q11.2) MUTATED"   "DEL PEAK 33(21Q11.2) MUTATED" 
                    TCGA-EF-5830                     TCGA-EF-5831 
  "DEL PEAK 33(21Q11.2) MUTATED"   "DEL PEAK 33(21Q11.2) MUTATED" 
                    TCGA-EI-6506                     TCGA-EI-6507 
  "DEL PEAK 33(21Q11.2) MUTATED" "DEL PEAK 33(21Q11.2) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
  "DEL PEAK 33(21Q11.2) MUTATED" "DEL PEAK 33(21Q11.2) WILD-TYPE" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"DEL PEAK 33(21Q11.2) WILD-TYPE"   "DEL PEAK 33(21Q11.2) MUTATED" 
                    TCGA-EI-6512                     TCGA-EI-6513 
  "DEL PEAK 33(21Q11.2) MUTATED"   "DEL PEAK 33(21Q11.2) MUTATED" 
                    TCGA-EI-6514                     TCGA-EI-6881 
"DEL PEAK 33(21Q11.2) WILD-TYPE"   "DEL PEAK 33(21Q11.2) MUTATED" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"DEL PEAK 33(21Q11.2) WILD-TYPE" "DEL PEAK 33(21Q11.2) WILD-TYPE" 
                    TCGA-EI-6884                     TCGA-EI-6885 
"DEL PEAK 33(21Q11.2) WILD-TYPE" "DEL PEAK 33(21Q11.2) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"DEL PEAK 33(21Q11.2) WILD-TYPE"   "DEL PEAK 33(21Q11.2) MUTATED" 
                    TCGA-EI-7004                     TCGA-F5-6465 
  "DEL PEAK 33(21Q11.2) MUTATED" "DEL PEAK 33(21Q11.2) WILD-TYPE" 
                    TCGA-F5-6571                     TCGA-F5-6702 
  "DEL PEAK 33(21Q11.2) MUTATED" "DEL PEAK 33(21Q11.2) WILD-TYPE" 
                    TCGA-F5-6810                     TCGA-F5-6811 
  "DEL PEAK 33(21Q11.2) MUTATED"   "DEL PEAK 33(21Q11.2) MUTATED" 
                    TCGA-F5-6812                     TCGA-F5-6813 
  "DEL PEAK 33(21Q11.2) MUTATED" "DEL PEAK 33(21Q11.2) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
  "DEL PEAK 33(21Q11.2) MUTATED" "DEL PEAK 33(21Q11.2) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
  "DEL PEAK 33(21Q11.2) MUTATED" "DEL PEAK 33(21Q11.2) WILD-TYPE" 
                    TCGA-G5-6233                     TCGA-G5-6235 
  "DEL PEAK 33(21Q11.2) MUTATED" "DEL PEAK 33(21Q11.2) WILD-TYPE" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"DEL PEAK 33(21Q11.2) WILD-TYPE"   "DEL PEAK 33(21Q11.2) MUTATED" 
                    TCGA-AF-2687                     TCGA-AF-2689 
  "DEL PEAK 33(21Q11.2) MUTATED"   "DEL PEAK 33(21Q11.2) MUTATED" 
                    TCGA-AF-2690                     TCGA-AF-2691 
  "DEL PEAK 33(21Q11.2) MUTATED" "DEL PEAK 33(21Q11.2) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"DEL PEAK 33(21Q11.2) WILD-TYPE"   "DEL PEAK 33(21Q11.2) MUTATED" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK 33(21Q11.2) WILD-TYPE" "DEL PEAK 33(21Q11.2) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 33(21Q11.2) WILD-TYPE"   "DEL PEAK 33(21Q11.2) MUTATED" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 33(21Q11.2) WILD-TYPE"   "DEL PEAK 33(21Q11.2) MUTATED" 
                    TCGA-AF-6655                     TCGA-AF-6672 
  "DEL PEAK 33(21Q11.2) MUTATED"   "DEL PEAK 33(21Q11.2) MUTATED" 
                    TCGA-AG-3575                     TCGA-AG-3581 
  "DEL PEAK 33(21Q11.2) MUTATED"   "DEL PEAK 33(21Q11.2) MUTATED" 
                    TCGA-AG-3582                     TCGA-AG-3583 
  "DEL PEAK 33(21Q11.2) MUTATED" "DEL PEAK 33(21Q11.2) WILD-TYPE" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"DEL PEAK 33(21Q11.2) WILD-TYPE"   "DEL PEAK 33(21Q11.2) MUTATED" 
                    TCGA-AG-3599                     TCGA-AG-3605 
  "DEL PEAK 33(21Q11.2) MUTATED" "DEL PEAK 33(21Q11.2) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
"DEL PEAK 33(21Q11.2) WILD-TYPE" "DEL PEAK 33(21Q11.2) WILD-TYPE" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"DEL PEAK 33(21Q11.2) WILD-TYPE" "DEL PEAK 33(21Q11.2) WILD-TYPE" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"DEL PEAK 33(21Q11.2) WILD-TYPE" "DEL PEAK 33(21Q11.2) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 33(21Q11.2) WILD-TYPE" "DEL PEAK 33(21Q11.2) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK 33(21Q11.2) WILD-TYPE" "DEL PEAK 33(21Q11.2) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
  "DEL PEAK 33(21Q11.2) MUTATED" "DEL PEAK 33(21Q11.2) WILD-TYPE" 
                    TCGA-AG-4001                     TCGA-AG-4007 
  "DEL PEAK 33(21Q11.2) MUTATED" "DEL PEAK 33(21Q11.2) WILD-TYPE" 
                    TCGA-AG-4008                     TCGA-AG-4022 
  "DEL PEAK 33(21Q11.2) MUTATED" "DEL PEAK 33(21Q11.2) WILD-TYPE" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"DEL PEAK 33(21Q11.2) WILD-TYPE" "DEL PEAK 33(21Q11.2) WILD-TYPE" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
"DEL PEAK 33(21Q11.2) WILD-TYPE" "DEL PEAK 33(21Q11.2) WILD-TYPE" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
"DEL PEAK 33(21Q11.2) WILD-TYPE" "DEL PEAK 33(21Q11.2) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
"DEL PEAK 33(21Q11.2) WILD-TYPE" "DEL PEAK 33(21Q11.2) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
"DEL PEAK 33(21Q11.2) WILD-TYPE" "DEL PEAK 33(21Q11.2) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
  "DEL PEAK 33(21Q11.2) MUTATED"   "DEL PEAK 33(21Q11.2) MUTATED" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
  "DEL PEAK 33(21Q11.2) MUTATED"   "DEL PEAK 33(21Q11.2) MUTATED" 
                    TCGA-AG-A020                     TCGA-AG-A023 
  "DEL PEAK 33(21Q11.2) MUTATED" "DEL PEAK 33(21Q11.2) WILD-TYPE" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"DEL PEAK 33(21Q11.2) WILD-TYPE"   "DEL PEAK 33(21Q11.2) MUTATED" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
  "DEL PEAK 33(21Q11.2) MUTATED"   "DEL PEAK 33(21Q11.2) MUTATED" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
  "DEL PEAK 33(21Q11.2) MUTATED" "DEL PEAK 33(21Q11.2) WILD-TYPE" 
                    TCGA-AH-6544                     TCGA-AH-6547 
  "DEL PEAK 33(21Q11.2) MUTATED" "DEL PEAK 33(21Q11.2) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
  "DEL PEAK 33(21Q11.2) MUTATED" "DEL PEAK 33(21Q11.2) WILD-TYPE" 
                    TCGA-AH-6897                     TCGA-AH-6903 
"DEL PEAK 33(21Q11.2) WILD-TYPE" "DEL PEAK 33(21Q11.2) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
"DEL PEAK 33(21Q11.2) WILD-TYPE" "DEL PEAK 33(21Q11.2) WILD-TYPE" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"DEL PEAK 33(21Q11.2) WILD-TYPE" "DEL PEAK 33(21Q11.2) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
"DEL PEAK 33(21Q11.2) WILD-TYPE"   "DEL PEAK 33(21Q11.2) MUTATED" 
                    TCGA-CL-4957                     TCGA-CL-5917 
  "DEL PEAK 33(21Q11.2) MUTATED" "DEL PEAK 33(21Q11.2) WILD-TYPE" 
                    TCGA-CL-5918                     TCGA-DC-4745 
"DEL PEAK 33(21Q11.2) WILD-TYPE"   "DEL PEAK 33(21Q11.2) MUTATED" 
                    TCGA-DC-4749                     TCGA-DC-5337 
"DEL PEAK 33(21Q11.2) WILD-TYPE" "DEL PEAK 33(21Q11.2) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
"DEL PEAK 33(21Q11.2) WILD-TYPE" "DEL PEAK 33(21Q11.2) WILD-TYPE" 
                    TCGA-DC-6155                     TCGA-DC-6156 
  "DEL PEAK 33(21Q11.2) MUTATED" "DEL PEAK 33(21Q11.2) WILD-TYPE" 
                    TCGA-DC-6157                     TCGA-DC-6158 
  "DEL PEAK 33(21Q11.2) MUTATED"   "DEL PEAK 33(21Q11.2) MUTATED" 
                    TCGA-DC-6160                     TCGA-DC-6681 
"DEL PEAK 33(21Q11.2) WILD-TYPE" "DEL PEAK 33(21Q11.2) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
  "DEL PEAK 33(21Q11.2) MUTATED"   "DEL PEAK 33(21Q11.2) MUTATED" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"DEL PEAK 33(21Q11.2) WILD-TYPE"   "DEL PEAK 33(21Q11.2) MUTATED" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
"DEL PEAK 33(21Q11.2) WILD-TYPE"   "DEL PEAK 33(21Q11.2) MUTATED" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
"DEL PEAK 33(21Q11.2) WILD-TYPE" "DEL PEAK 33(21Q11.2) WILD-TYPE" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
  "DEL PEAK 33(21Q11.2) MUTATED"   "DEL PEAK 33(21Q11.2) MUTATED" 
                    TCGA-EF-5830                     TCGA-EF-5831 
  "DEL PEAK 33(21Q11.2) MUTATED"   "DEL PEAK 33(21Q11.2) MUTATED" 
                    TCGA-EI-6506                     TCGA-EI-6507 
  "DEL PEAK 33(21Q11.2) MUTATED" "DEL PEAK 33(21Q11.2) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
  "DEL PEAK 33(21Q11.2) MUTATED" "DEL PEAK 33(21Q11.2) WILD-TYPE" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"DEL PEAK 33(21Q11.2) WILD-TYPE"   "DEL PEAK 33(21Q11.2) MUTATED" 
                    TCGA-EI-6512                     TCGA-EI-6513 
  "DEL PEAK 33(21Q11.2) MUTATED"   "DEL PEAK 33(21Q11.2) MUTATED" 
                    TCGA-EI-6514                     TCGA-EI-6881 
"DEL PEAK 33(21Q11.2) WILD-TYPE"   "DEL PEAK 33(21Q11.2) MUTATED" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"DEL PEAK 33(21Q11.2) WILD-TYPE" "DEL PEAK 33(21Q11.2) WILD-TYPE" 
                    TCGA-EI-6884                     TCGA-EI-6885 
"DEL PEAK 33(21Q11.2) WILD-TYPE" "DEL PEAK 33(21Q11.2) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"DEL PEAK 33(21Q11.2) WILD-TYPE"   "DEL PEAK 33(21Q11.2) MUTATED" 
                    TCGA-EI-7004                     TCGA-F5-6465 
  "DEL PEAK 33(21Q11.2) MUTATED" "DEL PEAK 33(21Q11.2) WILD-TYPE" 
                    TCGA-F5-6571                     TCGA-F5-6702 
  "DEL PEAK 33(21Q11.2) MUTATED" "DEL PEAK 33(21Q11.2) WILD-TYPE" 
                    TCGA-F5-6810                     TCGA-F5-6811 
  "DEL PEAK 33(21Q11.2) MUTATED"   "DEL PEAK 33(21Q11.2) MUTATED" 
                    TCGA-F5-6812                     TCGA-F5-6813 
  "DEL PEAK 33(21Q11.2) MUTATED" "DEL PEAK 33(21Q11.2) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
  "DEL PEAK 33(21Q11.2) MUTATED" "DEL PEAK 33(21Q11.2) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
  "DEL PEAK 33(21Q11.2) MUTATED" "DEL PEAK 33(21Q11.2) WILD-TYPE" 
                    TCGA-G5-6233                     TCGA-G5-6235 
  "DEL PEAK 33(21Q11.2) MUTATED" "DEL PEAK 33(21Q11.2) WILD-TYPE" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"DEL PEAK 33(21Q11.2) WILD-TYPE"   "DEL PEAK 33(21Q11.2) MUTATED" 
[1] "hr=" "1.4"
D58V2, continuous
                                vv
clus                             STAGE I STAGE II STAGE IIA STAGE IIB STAGE IIC
  DEL PEAK 33(21Q11.2) MUTATED        11        6        15         1         1
  DEL PEAK 33(21Q11.2) WILD-TYPE      19        2        23         1         1
                                vv
clus                             STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  DEL PEAK 33(21Q11.2) MUTATED           3          6         12          4
  DEL PEAK 33(21Q11.2) WILD-TYPE         2          3         11         10
                                vv
clus                             STAGE IV STAGE IVA
  DEL PEAK 33(21Q11.2) MUTATED          8         3
  DEL PEAK 33(21Q11.2) WILD-TYPE        9         6
D58V3, multiclass
                                vv
clus                             T1 T2 T3 T4
  DEL PEAK 33(21Q11.2) MUTATED    1 17 47  6
  DEL PEAK 33(21Q11.2) WILD-TYPE  8 12 62  8
D58V4, multiclass
    clus
vv   DEL PEAK 33(21Q11.2) MUTATED DEL PEAK 33(21Q11.2) WILD-TYPE
  T1                            1                              8
  T2                           17                             12
  T3                           47                             62
  T4                            6                              8
                                vv
clus                             N0 N1 N2
  DEL PEAK 33(21Q11.2) MUTATED   34 24 13
  DEL PEAK 33(21Q11.2) WILD-TYPE 49 21 19
D58V5, multiclass
    clus
vv   DEL PEAK 33(21Q11.2) MUTATED DEL PEAK 33(21Q11.2) WILD-TYPE
  N0                           34                             49
  N1                           24                             21
  N2                           13                             19
                                vv
clus                             M0 M1 M1A MX
  DEL PEAK 33(21Q11.2) MUTATED   56  9   0  6
  DEL PEAK 33(21Q11.2) WILD-TYPE 67 13   2  7
D58V6, multiclass
     clus
vv    DEL PEAK 33(21Q11.2) MUTATED DEL PEAK 33(21Q11.2) WILD-TYPE
  M0                            56                             67
  M1                             9                             13
  M1A                            0                              2
  MX                             6                              7
D58V7, binary
                                cls
clus                              0  1
  DEL PEAK 33(21Q11.2) MUTATED   31 40
  DEL PEAK 33(21Q11.2) WILD-TYPE 43 48
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 33(21Q11.2) MUTATED     31   40
  DEL PEAK 33(21Q11.2) WILD-TYPE   43   48
        clus
vv       DEL PEAK 33(21Q11.2) MUTATED DEL PEAK 33(21Q11.2) WILD-TYPE
  FEMALE                           31                             43
  MALE                             40                             48
D58V8, binary
                                cls
clus                              0  1
  DEL PEAK 33(21Q11.2) MUTATED   64  3
  DEL PEAK 33(21Q11.2) WILD-TYPE 79 10
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 33(21Q11.2) MUTATED     64    3
  DEL PEAK 33(21Q11.2) WILD-TYPE   79   10
                                clus
vv                               DEL PEAK 33(21Q11.2) MUTATED
  RECTAL ADENOCARCINOMA                                    64
  RECTAL MUCINOUS ADENOCARCINOMA                            3
                                clus
vv                               DEL PEAK 33(21Q11.2) WILD-TYPE
  RECTAL ADENOCARCINOMA                                      79
  RECTAL MUCINOUS ADENOCARCINOMA                             10
D58V9, binary
                                cls
clus                              0  1
  DEL PEAK 33(21Q11.2) MUTATED    3 68
  DEL PEAK 33(21Q11.2) WILD-TYPE  3 88
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 33(21Q11.2) MUTATED      3   68
  DEL PEAK 33(21Q11.2) WILD-TYPE    3   88
     clus
vv    DEL PEAK 33(21Q11.2) MUTATED DEL PEAK 33(21Q11.2) WILD-TYPE
  NO                             3                              3
  YES                           68                             88
                                vv
clus                             R0 R1 R2 RX
  DEL PEAK 33(21Q11.2) MUTATED   53  1  4  0
  DEL PEAK 33(21Q11.2) WILD-TYPE 68  1  8  3
D58V10, multiclass
    clus
vv   DEL PEAK 33(21Q11.2) MUTATED DEL PEAK 33(21Q11.2) WILD-TYPE
  R0                           53                             68
  R1                            1                              1
  R2                            4                              8
  RX                            0                              3
D58V11, continuous

Clustering(59) Variable = DEL PEAK 34(22Q13.31) MUTATION ANALYSIS
D59V1, survival
                                 sevent
clus2                              0  1
  DEL PEAK 34(22Q13.31) MUTATED   44  7
  DEL PEAK 34(22Q13.31) WILD-TYPE 73  6
  DEL PEAK 34(22Q13.31) MUTATED DEL PEAK 34(22Q13.31) WILD-TYPE 
                             51                              79 
  DEL PEAK 34(22Q13.31) MUTATED DEL PEAK 34(22Q13.31) WILD-TYPE 
                              7                               6 
$`DEL PEAK 34(22Q13.31) MUTATED`
TCGA-AF-2692 TCGA-AF-2693 TCGA-AF-4110 TCGA-AF-6136 TCGA-AF-6672 TCGA-AG-3575 
       13.55        19.10        14.50        15.35        10.39        12.00 
TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3731 TCGA-AG-3883 TCGA-AG-3896 
        1.02         1.02         2.01         1.02         1.02         1.02 
TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A01L TCGA-AG-A020 
        1.02         1.02        25.94        23.01        12.00        10.98 
TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02X TCGA-AH-6544 TCGA-AH-6644 TCGA-BM-6198 
        1.94        38.93        40.96         0.49         0.72        10.19 
TCGA-CI-6619 TCGA-CI-6624 TCGA-CL-4957 TCGA-DC-4745 TCGA-DC-4749 TCGA-DC-5869 
        6.02         4.70        13.97        10.98        11.01        12.99 
TCGA-DC-6155 TCGA-DC-6158 TCGA-DC-6160 TCGA-DC-6682 TCGA-DC-6683 TCGA-DY-A1DC 
       14.01         6.97        30.05        13.02        10.06        41.33 
TCGA-DY-A1DE TCGA-DY-A1DG TCGA-DY-A1H8 TCGA-EF-5831 TCGA-EI-6506 TCGA-EI-6508 
      129.27        51.48        32.58         2.40        20.55        20.91 
TCGA-EI-6512 TCGA-EI-6881 TCGA-EI-7002 TCGA-F5-6702 TCGA-F5-6810 TCGA-F5-6812 
       17.69        16.37        11.97         2.17         0.39         0.66 
TCGA-F5-6863 TCGA-G5-6233 TCGA-G5-6641 
        0.76        18.25        26.43 

$`DEL PEAK 34(22Q13.31) WILD-TYPE`
TCGA-AF-2687 TCGA-AF-2689 TCGA-AF-2690 TCGA-AF-2691 TCGA-AF-3400 TCGA-AF-3911 
       24.13        17.95        17.23        10.62        12.72        25.02 
TCGA-AF-3913 TCGA-AF-5654 TCGA-AF-6655 TCGA-AG-3586 TCGA-AG-3587 TCGA-AG-3599 
       10.39         8.45        11.67         1.02         1.02         0.99 
TCGA-AG-3605 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3742 TCGA-AG-3878 TCGA-AG-3887 
        0.99         7.96         0.95         0.99         0.99         0.92 
TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-4022 
        1.02         0.99         0.99         1.02         1.02         0.99 
TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 
       20.94        13.91         6.02        17.03        15.91        13.02 
TCGA-AG-A016 TCGA-AG-A01J TCGA-AG-A01N TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A023 
        1.02         1.02        12.00        70.03        63.98        51.98 
TCGA-AG-A025 TCGA-AG-A02N TCGA-AG-A032 TCGA-AH-6547 TCGA-AH-6643 TCGA-AH-6897 
       49.94        61.94        38.01         1.45         0.69         4.60 
TCGA-AH-6903 TCGA-CI-6620 TCGA-CI-6622 TCGA-CI-6623 TCGA-CL-5917 TCGA-CL-5918 
        1.81         6.02         6.94         9.37        60.00         7.99 
TCGA-DC-5337 TCGA-DC-6154 TCGA-DC-6156 TCGA-DC-6157 TCGA-DC-6681 TCGA-DT-5265 
       15.02        12.00        15.02        36.00        12.95         5.29 
TCGA-DY-A0XA TCGA-DY-A1DD TCGA-DY-A1DF TCGA-EF-5830 TCGA-EI-6507 TCGA-EI-6509 
      126.41        57.24        24.13         0.49        19.96        17.00 
TCGA-EI-6510 TCGA-EI-6511 TCGA-EI-6513 TCGA-EI-6514 TCGA-EI-6882 TCGA-EI-6883 
       18.28        15.85        16.34        16.31         8.61        11.51 
TCGA-EI-6884 TCGA-EI-6885 TCGA-EI-6917 TCGA-EI-7004 TCGA-F5-6465 TCGA-F5-6571 
       10.78        13.61        17.46         8.45         3.39         0.85 
TCGA-F5-6811 TCGA-F5-6813 TCGA-F5-6814 TCGA-F5-6861 TCGA-F5-6864 TCGA-G5-6235 
        1.02         0.69         0.53         1.08         0.46        55.76 
TCGA-G5-6572 
       47.08 

  DEL PEAK 34(22Q13.31) MUTATED DEL PEAK 34(22Q13.31) WILD-TYPE 
                           0.39                            0.46 
  DEL PEAK 34(22Q13.31) MUTATED DEL PEAK 34(22Q13.31) WILD-TYPE 
                         129.27                          126.41 
  DEL PEAK 34(22Q13.31) MUTATED DEL PEAK 34(22Q13.31) WILD-TYPE 
                          11.97                           10.62 
[1] "0.4 - 129.3 (12.0)" "0.5 - 126.4 (10.6)"
                     TCGA-AF-2687                      TCGA-AF-2689 
"DEL PEAK 34(22Q13.31) WILD-TYPE" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-AF-2690                      TCGA-AF-2691 
"DEL PEAK 34(22Q13.31) WILD-TYPE" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-AF-2692                      TCGA-AF-2693 
  "DEL PEAK 34(22Q13.31) MUTATED"   "DEL PEAK 34(22Q13.31) MUTATED" 
                     TCGA-AF-3400                      TCGA-AF-3911 
"DEL PEAK 34(22Q13.31) WILD-TYPE" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-AF-3913                      TCGA-AF-4110 
"DEL PEAK 34(22Q13.31) WILD-TYPE"   "DEL PEAK 34(22Q13.31) MUTATED" 
                     TCGA-AF-5654                      TCGA-AF-6136 
"DEL PEAK 34(22Q13.31) WILD-TYPE"   "DEL PEAK 34(22Q13.31) MUTATED" 
                     TCGA-AF-6655                      TCGA-AF-6672 
"DEL PEAK 34(22Q13.31) WILD-TYPE"   "DEL PEAK 34(22Q13.31) MUTATED" 
                     TCGA-AG-3575                      TCGA-AG-3581 
  "DEL PEAK 34(22Q13.31) MUTATED"   "DEL PEAK 34(22Q13.31) MUTATED" 
                     TCGA-AG-3582                      TCGA-AG-3583 
  "DEL PEAK 34(22Q13.31) MUTATED"   "DEL PEAK 34(22Q13.31) MUTATED" 
                     TCGA-AG-3586                      TCGA-AG-3587 
"DEL PEAK 34(22Q13.31) WILD-TYPE" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-AG-3599                      TCGA-AG-3605 
"DEL PEAK 34(22Q13.31) WILD-TYPE" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-AG-3726                      TCGA-AG-3727 
"DEL PEAK 34(22Q13.31) WILD-TYPE" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-AG-3731                      TCGA-AG-3742 
  "DEL PEAK 34(22Q13.31) MUTATED" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-AG-3878                      TCGA-AG-3883 
"DEL PEAK 34(22Q13.31) WILD-TYPE"   "DEL PEAK 34(22Q13.31) MUTATED" 
                     TCGA-AG-3887                      TCGA-AG-3892 
"DEL PEAK 34(22Q13.31) WILD-TYPE" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-AG-3893                      TCGA-AG-3894 
"DEL PEAK 34(22Q13.31) WILD-TYPE" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-AG-3896                      TCGA-AG-3999 
  "DEL PEAK 34(22Q13.31) MUTATED"   "DEL PEAK 34(22Q13.31) MUTATED" 
                     TCGA-AG-4001                      TCGA-AG-4007 
  "DEL PEAK 34(22Q13.31) MUTATED" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-AG-4008                      TCGA-AG-4022 
"DEL PEAK 34(22Q13.31) WILD-TYPE" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-AG-A002                      TCGA-AG-A008 
"DEL PEAK 34(22Q13.31) WILD-TYPE" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-AG-A00C                      TCGA-AG-A00H 
"DEL PEAK 34(22Q13.31) WILD-TYPE"   "DEL PEAK 34(22Q13.31) MUTATED" 
                     TCGA-AG-A00Y                      TCGA-AG-A011 
  "DEL PEAK 34(22Q13.31) MUTATED" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-AG-A014                      TCGA-AG-A015 
"DEL PEAK 34(22Q13.31) WILD-TYPE" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-AG-A016                      TCGA-AG-A01J 
"DEL PEAK 34(22Q13.31) WILD-TYPE" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-AG-A01L                      TCGA-AG-A01N 
  "DEL PEAK 34(22Q13.31) MUTATED" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-AG-A01W                      TCGA-AG-A01Y 
"DEL PEAK 34(22Q13.31) WILD-TYPE" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-AG-A020                      TCGA-AG-A023 
  "DEL PEAK 34(22Q13.31) MUTATED" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-AG-A025                      TCGA-AG-A026 
"DEL PEAK 34(22Q13.31) WILD-TYPE"   "DEL PEAK 34(22Q13.31) MUTATED" 
                     TCGA-AG-A02G                      TCGA-AG-A02N 
  "DEL PEAK 34(22Q13.31) MUTATED" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-AG-A02X                      TCGA-AG-A032 
  "DEL PEAK 34(22Q13.31) MUTATED" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-AH-6544                      TCGA-AH-6547 
  "DEL PEAK 34(22Q13.31) MUTATED" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-AH-6643                      TCGA-AH-6644 
"DEL PEAK 34(22Q13.31) WILD-TYPE"   "DEL PEAK 34(22Q13.31) MUTATED" 
                     TCGA-AH-6897                      TCGA-AH-6903 
"DEL PEAK 34(22Q13.31) WILD-TYPE" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-BM-6198                      TCGA-CI-6619 
  "DEL PEAK 34(22Q13.31) MUTATED"   "DEL PEAK 34(22Q13.31) MUTATED" 
                     TCGA-CI-6620                      TCGA-CI-6622 
"DEL PEAK 34(22Q13.31) WILD-TYPE" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-CI-6623                      TCGA-CI-6624 
"DEL PEAK 34(22Q13.31) WILD-TYPE"   "DEL PEAK 34(22Q13.31) MUTATED" 
                     TCGA-CL-4957                      TCGA-CL-5917 
  "DEL PEAK 34(22Q13.31) MUTATED" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-CL-5918                      TCGA-DC-4745 
"DEL PEAK 34(22Q13.31) WILD-TYPE"   "DEL PEAK 34(22Q13.31) MUTATED" 
                     TCGA-DC-4749                      TCGA-DC-5337 
  "DEL PEAK 34(22Q13.31) MUTATED" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-DC-5869                      TCGA-DC-6154 
  "DEL PEAK 34(22Q13.31) MUTATED" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-DC-6155                      TCGA-DC-6156 
  "DEL PEAK 34(22Q13.31) MUTATED" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-DC-6157                      TCGA-DC-6158 
"DEL PEAK 34(22Q13.31) WILD-TYPE"   "DEL PEAK 34(22Q13.31) MUTATED" 
                     TCGA-DC-6160                      TCGA-DC-6681 
  "DEL PEAK 34(22Q13.31) MUTATED" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-DC-6682                      TCGA-DC-6683 
  "DEL PEAK 34(22Q13.31) MUTATED"   "DEL PEAK 34(22Q13.31) MUTATED" 
                     TCGA-DT-5265                      TCGA-DY-A0XA 
"DEL PEAK 34(22Q13.31) WILD-TYPE" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-DY-A1DC                      TCGA-DY-A1DD 
  "DEL PEAK 34(22Q13.31) MUTATED" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-DY-A1DE                      TCGA-DY-A1DF 
  "DEL PEAK 34(22Q13.31) MUTATED" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-DY-A1DG                      TCGA-DY-A1H8 
  "DEL PEAK 34(22Q13.31) MUTATED"   "DEL PEAK 34(22Q13.31) MUTATED" 
                     TCGA-EF-5830                      TCGA-EF-5831 
"DEL PEAK 34(22Q13.31) WILD-TYPE"   "DEL PEAK 34(22Q13.31) MUTATED" 
                     TCGA-EI-6506                      TCGA-EI-6507 
  "DEL PEAK 34(22Q13.31) MUTATED" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-EI-6508                      TCGA-EI-6509 
  "DEL PEAK 34(22Q13.31) MUTATED" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-EI-6510                      TCGA-EI-6511 
"DEL PEAK 34(22Q13.31) WILD-TYPE" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-EI-6512                      TCGA-EI-6513 
  "DEL PEAK 34(22Q13.31) MUTATED" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-EI-6514                      TCGA-EI-6881 
"DEL PEAK 34(22Q13.31) WILD-TYPE"   "DEL PEAK 34(22Q13.31) MUTATED" 
                     TCGA-EI-6882                      TCGA-EI-6883 
"DEL PEAK 34(22Q13.31) WILD-TYPE" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-EI-6884                      TCGA-EI-6885 
"DEL PEAK 34(22Q13.31) WILD-TYPE" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-EI-6917                      TCGA-EI-7002 
"DEL PEAK 34(22Q13.31) WILD-TYPE"   "DEL PEAK 34(22Q13.31) MUTATED" 
                     TCGA-EI-7004                      TCGA-F5-6465 
"DEL PEAK 34(22Q13.31) WILD-TYPE" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-F5-6571                      TCGA-F5-6702 
"DEL PEAK 34(22Q13.31) WILD-TYPE"   "DEL PEAK 34(22Q13.31) MUTATED" 
                     TCGA-F5-6810                      TCGA-F5-6811 
  "DEL PEAK 34(22Q13.31) MUTATED" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-F5-6812                      TCGA-F5-6813 
  "DEL PEAK 34(22Q13.31) MUTATED" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-F5-6814                      TCGA-F5-6861 
"DEL PEAK 34(22Q13.31) WILD-TYPE" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-F5-6863                      TCGA-F5-6864 
  "DEL PEAK 34(22Q13.31) MUTATED" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-G5-6233                      TCGA-G5-6235 
  "DEL PEAK 34(22Q13.31) MUTATED" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-G5-6572                      TCGA-G5-6641 
"DEL PEAK 34(22Q13.31) WILD-TYPE"   "DEL PEAK 34(22Q13.31) MUTATED" 
                     TCGA-AF-2687                      TCGA-AF-2689 
"DEL PEAK 34(22Q13.31) WILD-TYPE" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-AF-2690                      TCGA-AF-2691 
"DEL PEAK 34(22Q13.31) WILD-TYPE" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-AF-2692                      TCGA-AF-2693 
  "DEL PEAK 34(22Q13.31) MUTATED"   "DEL PEAK 34(22Q13.31) MUTATED" 
                     TCGA-AF-3400                      TCGA-AF-3911 
"DEL PEAK 34(22Q13.31) WILD-TYPE" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-AF-3913                      TCGA-AF-4110 
"DEL PEAK 34(22Q13.31) WILD-TYPE"   "DEL PEAK 34(22Q13.31) MUTATED" 
                     TCGA-AF-5654                      TCGA-AF-6136 
"DEL PEAK 34(22Q13.31) WILD-TYPE"   "DEL PEAK 34(22Q13.31) MUTATED" 
                     TCGA-AF-6655                      TCGA-AF-6672 
"DEL PEAK 34(22Q13.31) WILD-TYPE"   "DEL PEAK 34(22Q13.31) MUTATED" 
                     TCGA-AG-3575                      TCGA-AG-3581 
  "DEL PEAK 34(22Q13.31) MUTATED"   "DEL PEAK 34(22Q13.31) MUTATED" 
                     TCGA-AG-3582                      TCGA-AG-3583 
  "DEL PEAK 34(22Q13.31) MUTATED"   "DEL PEAK 34(22Q13.31) MUTATED" 
                     TCGA-AG-3586                      TCGA-AG-3587 
"DEL PEAK 34(22Q13.31) WILD-TYPE" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-AG-3599                      TCGA-AG-3605 
"DEL PEAK 34(22Q13.31) WILD-TYPE" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-AG-3726                      TCGA-AG-3727 
"DEL PEAK 34(22Q13.31) WILD-TYPE" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-AG-3731                      TCGA-AG-3742 
  "DEL PEAK 34(22Q13.31) MUTATED" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-AG-3878                      TCGA-AG-3883 
"DEL PEAK 34(22Q13.31) WILD-TYPE"   "DEL PEAK 34(22Q13.31) MUTATED" 
                     TCGA-AG-3887                      TCGA-AG-3892 
"DEL PEAK 34(22Q13.31) WILD-TYPE" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-AG-3893                      TCGA-AG-3894 
"DEL PEAK 34(22Q13.31) WILD-TYPE" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-AG-3896                      TCGA-AG-3999 
  "DEL PEAK 34(22Q13.31) MUTATED"   "DEL PEAK 34(22Q13.31) MUTATED" 
                     TCGA-AG-4001                      TCGA-AG-4007 
  "DEL PEAK 34(22Q13.31) MUTATED" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-AG-4008                      TCGA-AG-4022 
"DEL PEAK 34(22Q13.31) WILD-TYPE" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-AG-A002                      TCGA-AG-A008 
"DEL PEAK 34(22Q13.31) WILD-TYPE" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-AG-A00C                      TCGA-AG-A00H 
"DEL PEAK 34(22Q13.31) WILD-TYPE"   "DEL PEAK 34(22Q13.31) MUTATED" 
                     TCGA-AG-A00Y                      TCGA-AG-A011 
  "DEL PEAK 34(22Q13.31) MUTATED" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-AG-A014                      TCGA-AG-A015 
"DEL PEAK 34(22Q13.31) WILD-TYPE" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-AG-A016                      TCGA-AG-A01J 
"DEL PEAK 34(22Q13.31) WILD-TYPE" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-AG-A01L                      TCGA-AG-A01N 
  "DEL PEAK 34(22Q13.31) MUTATED" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-AG-A01W                      TCGA-AG-A01Y 
"DEL PEAK 34(22Q13.31) WILD-TYPE" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-AG-A020                      TCGA-AG-A023 
  "DEL PEAK 34(22Q13.31) MUTATED" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-AG-A025                      TCGA-AG-A026 
"DEL PEAK 34(22Q13.31) WILD-TYPE"   "DEL PEAK 34(22Q13.31) MUTATED" 
                     TCGA-AG-A02G                      TCGA-AG-A02N 
  "DEL PEAK 34(22Q13.31) MUTATED" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-AG-A02X                      TCGA-AG-A032 
  "DEL PEAK 34(22Q13.31) MUTATED" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-AH-6544                      TCGA-AH-6547 
  "DEL PEAK 34(22Q13.31) MUTATED" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-AH-6643                      TCGA-AH-6644 
"DEL PEAK 34(22Q13.31) WILD-TYPE"   "DEL PEAK 34(22Q13.31) MUTATED" 
                     TCGA-AH-6897                      TCGA-AH-6903 
"DEL PEAK 34(22Q13.31) WILD-TYPE" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-BM-6198                      TCGA-CI-6619 
  "DEL PEAK 34(22Q13.31) MUTATED"   "DEL PEAK 34(22Q13.31) MUTATED" 
                     TCGA-CI-6620                      TCGA-CI-6622 
"DEL PEAK 34(22Q13.31) WILD-TYPE" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-CI-6623                      TCGA-CI-6624 
"DEL PEAK 34(22Q13.31) WILD-TYPE"   "DEL PEAK 34(22Q13.31) MUTATED" 
                     TCGA-CL-4957                      TCGA-CL-5917 
  "DEL PEAK 34(22Q13.31) MUTATED" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-CL-5918                      TCGA-DC-4745 
"DEL PEAK 34(22Q13.31) WILD-TYPE"   "DEL PEAK 34(22Q13.31) MUTATED" 
                     TCGA-DC-4749                      TCGA-DC-5337 
  "DEL PEAK 34(22Q13.31) MUTATED" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-DC-5869                      TCGA-DC-6154 
  "DEL PEAK 34(22Q13.31) MUTATED" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-DC-6155                      TCGA-DC-6156 
  "DEL PEAK 34(22Q13.31) MUTATED" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-DC-6157                      TCGA-DC-6158 
"DEL PEAK 34(22Q13.31) WILD-TYPE"   "DEL PEAK 34(22Q13.31) MUTATED" 
                     TCGA-DC-6160                      TCGA-DC-6681 
  "DEL PEAK 34(22Q13.31) MUTATED" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-DC-6682                      TCGA-DC-6683 
  "DEL PEAK 34(22Q13.31) MUTATED"   "DEL PEAK 34(22Q13.31) MUTATED" 
                     TCGA-DT-5265                      TCGA-DY-A0XA 
"DEL PEAK 34(22Q13.31) WILD-TYPE" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-DY-A1DC                      TCGA-DY-A1DD 
  "DEL PEAK 34(22Q13.31) MUTATED" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-DY-A1DE                      TCGA-DY-A1DF 
  "DEL PEAK 34(22Q13.31) MUTATED" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-DY-A1DG                      TCGA-DY-A1H8 
  "DEL PEAK 34(22Q13.31) MUTATED"   "DEL PEAK 34(22Q13.31) MUTATED" 
                     TCGA-EF-5830                      TCGA-EF-5831 
"DEL PEAK 34(22Q13.31) WILD-TYPE"   "DEL PEAK 34(22Q13.31) MUTATED" 
                     TCGA-EI-6506                      TCGA-EI-6507 
  "DEL PEAK 34(22Q13.31) MUTATED" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-EI-6508                      TCGA-EI-6509 
  "DEL PEAK 34(22Q13.31) MUTATED" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-EI-6510                      TCGA-EI-6511 
"DEL PEAK 34(22Q13.31) WILD-TYPE" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-EI-6512                      TCGA-EI-6513 
  "DEL PEAK 34(22Q13.31) MUTATED" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-EI-6514                      TCGA-EI-6881 
"DEL PEAK 34(22Q13.31) WILD-TYPE"   "DEL PEAK 34(22Q13.31) MUTATED" 
                     TCGA-EI-6882                      TCGA-EI-6883 
"DEL PEAK 34(22Q13.31) WILD-TYPE" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-EI-6884                      TCGA-EI-6885 
"DEL PEAK 34(22Q13.31) WILD-TYPE" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-EI-6917                      TCGA-EI-7002 
"DEL PEAK 34(22Q13.31) WILD-TYPE"   "DEL PEAK 34(22Q13.31) MUTATED" 
                     TCGA-EI-7004                      TCGA-F5-6465 
"DEL PEAK 34(22Q13.31) WILD-TYPE" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-F5-6571                      TCGA-F5-6702 
"DEL PEAK 34(22Q13.31) WILD-TYPE"   "DEL PEAK 34(22Q13.31) MUTATED" 
                     TCGA-F5-6810                      TCGA-F5-6811 
  "DEL PEAK 34(22Q13.31) MUTATED" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-F5-6812                      TCGA-F5-6813 
  "DEL PEAK 34(22Q13.31) MUTATED" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-F5-6814                      TCGA-F5-6861 
"DEL PEAK 34(22Q13.31) WILD-TYPE" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-F5-6863                      TCGA-F5-6864 
  "DEL PEAK 34(22Q13.31) MUTATED" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-G5-6233                      TCGA-G5-6235 
  "DEL PEAK 34(22Q13.31) MUTATED" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-G5-6572                      TCGA-G5-6641 
"DEL PEAK 34(22Q13.31) WILD-TYPE"   "DEL PEAK 34(22Q13.31) MUTATED" 
                     TCGA-AF-2687                      TCGA-AF-2689 
"DEL PEAK 34(22Q13.31) WILD-TYPE" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-AF-2690                      TCGA-AF-2691 
"DEL PEAK 34(22Q13.31) WILD-TYPE" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-AF-2692                      TCGA-AF-2693 
  "DEL PEAK 34(22Q13.31) MUTATED"   "DEL PEAK 34(22Q13.31) MUTATED" 
                     TCGA-AF-3400                      TCGA-AF-3911 
"DEL PEAK 34(22Q13.31) WILD-TYPE" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-AF-3913                      TCGA-AF-4110 
"DEL PEAK 34(22Q13.31) WILD-TYPE"   "DEL PEAK 34(22Q13.31) MUTATED" 
                     TCGA-AF-5654                      TCGA-AF-6136 
"DEL PEAK 34(22Q13.31) WILD-TYPE"   "DEL PEAK 34(22Q13.31) MUTATED" 
                     TCGA-AF-6655                      TCGA-AF-6672 
"DEL PEAK 34(22Q13.31) WILD-TYPE"   "DEL PEAK 34(22Q13.31) MUTATED" 
                     TCGA-AG-3575                      TCGA-AG-3581 
  "DEL PEAK 34(22Q13.31) MUTATED"   "DEL PEAK 34(22Q13.31) MUTATED" 
                     TCGA-AG-3582                      TCGA-AG-3583 
  "DEL PEAK 34(22Q13.31) MUTATED"   "DEL PEAK 34(22Q13.31) MUTATED" 
                     TCGA-AG-3586                      TCGA-AG-3587 
"DEL PEAK 34(22Q13.31) WILD-TYPE" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-AG-3599                      TCGA-AG-3605 
"DEL PEAK 34(22Q13.31) WILD-TYPE" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-AG-3726                      TCGA-AG-3727 
"DEL PEAK 34(22Q13.31) WILD-TYPE" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-AG-3731                      TCGA-AG-3742 
  "DEL PEAK 34(22Q13.31) MUTATED" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-AG-3878                      TCGA-AG-3883 
"DEL PEAK 34(22Q13.31) WILD-TYPE"   "DEL PEAK 34(22Q13.31) MUTATED" 
                     TCGA-AG-3887                      TCGA-AG-3892 
"DEL PEAK 34(22Q13.31) WILD-TYPE" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-AG-3893                      TCGA-AG-3894 
"DEL PEAK 34(22Q13.31) WILD-TYPE" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-AG-3896                      TCGA-AG-3999 
  "DEL PEAK 34(22Q13.31) MUTATED"   "DEL PEAK 34(22Q13.31) MUTATED" 
                     TCGA-AG-4001                      TCGA-AG-4007 
  "DEL PEAK 34(22Q13.31) MUTATED" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-AG-4008                      TCGA-AG-4022 
"DEL PEAK 34(22Q13.31) WILD-TYPE" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-AG-A002                      TCGA-AG-A008 
"DEL PEAK 34(22Q13.31) WILD-TYPE" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-AG-A00C                      TCGA-AG-A00H 
"DEL PEAK 34(22Q13.31) WILD-TYPE"   "DEL PEAK 34(22Q13.31) MUTATED" 
                     TCGA-AG-A00Y                      TCGA-AG-A011 
  "DEL PEAK 34(22Q13.31) MUTATED" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-AG-A014                      TCGA-AG-A015 
"DEL PEAK 34(22Q13.31) WILD-TYPE" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-AG-A016                      TCGA-AG-A01J 
"DEL PEAK 34(22Q13.31) WILD-TYPE" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-AG-A01L                      TCGA-AG-A01N 
  "DEL PEAK 34(22Q13.31) MUTATED" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-AG-A01W                      TCGA-AG-A01Y 
"DEL PEAK 34(22Q13.31) WILD-TYPE" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-AG-A020                      TCGA-AG-A023 
  "DEL PEAK 34(22Q13.31) MUTATED" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-AG-A025                      TCGA-AG-A026 
"DEL PEAK 34(22Q13.31) WILD-TYPE"   "DEL PEAK 34(22Q13.31) MUTATED" 
                     TCGA-AG-A02G                      TCGA-AG-A02N 
  "DEL PEAK 34(22Q13.31) MUTATED" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-AG-A02X                      TCGA-AG-A032 
  "DEL PEAK 34(22Q13.31) MUTATED" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-AH-6544                      TCGA-AH-6547 
  "DEL PEAK 34(22Q13.31) MUTATED" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-AH-6643                      TCGA-AH-6644 
"DEL PEAK 34(22Q13.31) WILD-TYPE"   "DEL PEAK 34(22Q13.31) MUTATED" 
                     TCGA-AH-6897                      TCGA-AH-6903 
"DEL PEAK 34(22Q13.31) WILD-TYPE" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-BM-6198                      TCGA-CI-6619 
  "DEL PEAK 34(22Q13.31) MUTATED"   "DEL PEAK 34(22Q13.31) MUTATED" 
                     TCGA-CI-6620                      TCGA-CI-6622 
"DEL PEAK 34(22Q13.31) WILD-TYPE" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-CI-6623                      TCGA-CI-6624 
"DEL PEAK 34(22Q13.31) WILD-TYPE"   "DEL PEAK 34(22Q13.31) MUTATED" 
                     TCGA-CL-4957                      TCGA-CL-5917 
  "DEL PEAK 34(22Q13.31) MUTATED" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-CL-5918                      TCGA-DC-4745 
"DEL PEAK 34(22Q13.31) WILD-TYPE"   "DEL PEAK 34(22Q13.31) MUTATED" 
                     TCGA-DC-4749                      TCGA-DC-5337 
  "DEL PEAK 34(22Q13.31) MUTATED" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-DC-5869                      TCGA-DC-6154 
  "DEL PEAK 34(22Q13.31) MUTATED" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-DC-6155                      TCGA-DC-6156 
  "DEL PEAK 34(22Q13.31) MUTATED" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-DC-6157                      TCGA-DC-6158 
"DEL PEAK 34(22Q13.31) WILD-TYPE"   "DEL PEAK 34(22Q13.31) MUTATED" 
                     TCGA-DC-6160                      TCGA-DC-6681 
  "DEL PEAK 34(22Q13.31) MUTATED" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-DC-6682                      TCGA-DC-6683 
  "DEL PEAK 34(22Q13.31) MUTATED"   "DEL PEAK 34(22Q13.31) MUTATED" 
                     TCGA-DT-5265                      TCGA-DY-A0XA 
"DEL PEAK 34(22Q13.31) WILD-TYPE" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-DY-A1DC                      TCGA-DY-A1DD 
  "DEL PEAK 34(22Q13.31) MUTATED" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-DY-A1DE                      TCGA-DY-A1DF 
  "DEL PEAK 34(22Q13.31) MUTATED" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-DY-A1DG                      TCGA-DY-A1H8 
  "DEL PEAK 34(22Q13.31) MUTATED"   "DEL PEAK 34(22Q13.31) MUTATED" 
                     TCGA-EF-5830                      TCGA-EF-5831 
"DEL PEAK 34(22Q13.31) WILD-TYPE"   "DEL PEAK 34(22Q13.31) MUTATED" 
                     TCGA-EI-6506                      TCGA-EI-6507 
  "DEL PEAK 34(22Q13.31) MUTATED" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-EI-6508                      TCGA-EI-6509 
  "DEL PEAK 34(22Q13.31) MUTATED" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-EI-6510                      TCGA-EI-6511 
"DEL PEAK 34(22Q13.31) WILD-TYPE" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-EI-6512                      TCGA-EI-6513 
  "DEL PEAK 34(22Q13.31) MUTATED" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-EI-6514                      TCGA-EI-6881 
"DEL PEAK 34(22Q13.31) WILD-TYPE"   "DEL PEAK 34(22Q13.31) MUTATED" 
                     TCGA-EI-6882                      TCGA-EI-6883 
"DEL PEAK 34(22Q13.31) WILD-TYPE" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-EI-6884                      TCGA-EI-6885 
"DEL PEAK 34(22Q13.31) WILD-TYPE" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-EI-6917                      TCGA-EI-7002 
"DEL PEAK 34(22Q13.31) WILD-TYPE"   "DEL PEAK 34(22Q13.31) MUTATED" 
                     TCGA-EI-7004                      TCGA-F5-6465 
"DEL PEAK 34(22Q13.31) WILD-TYPE" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-F5-6571                      TCGA-F5-6702 
"DEL PEAK 34(22Q13.31) WILD-TYPE"   "DEL PEAK 34(22Q13.31) MUTATED" 
                     TCGA-F5-6810                      TCGA-F5-6811 
  "DEL PEAK 34(22Q13.31) MUTATED" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-F5-6812                      TCGA-F5-6813 
  "DEL PEAK 34(22Q13.31) MUTATED" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-F5-6814                      TCGA-F5-6861 
"DEL PEAK 34(22Q13.31) WILD-TYPE" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-F5-6863                      TCGA-F5-6864 
  "DEL PEAK 34(22Q13.31) MUTATED" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-G5-6233                      TCGA-G5-6235 
  "DEL PEAK 34(22Q13.31) MUTATED" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-G5-6572                      TCGA-G5-6641 
"DEL PEAK 34(22Q13.31) WILD-TYPE"   "DEL PEAK 34(22Q13.31) MUTATED" 
[1] "hr=" "2.8"
D59V2, continuous
                                 vv
clus                              STAGE I STAGE II STAGE IIA STAGE IIB
  DEL PEAK 34(22Q13.31) MUTATED        10        2        16         0
  DEL PEAK 34(22Q13.31) WILD-TYPE      20        6        22         2
                                 vv
clus                              STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  DEL PEAK 34(22Q13.31) MUTATED           1         3          5         13
  DEL PEAK 34(22Q13.31) WILD-TYPE         1         2          4         10
                                 vv
clus                              STAGE IIIC STAGE IV STAGE IVA
  DEL PEAK 34(22Q13.31) MUTATED            2       10         3
  DEL PEAK 34(22Q13.31) WILD-TYPE         12        7         6
D59V3, multiclass
                                 vv
clus                              T1 T2 T3 T4
  DEL PEAK 34(22Q13.31) MUTATED    1 13 48  5
  DEL PEAK 34(22Q13.31) WILD-TYPE  8 16 61  9
D59V4, multiclass
    clus
vv   DEL PEAK 34(22Q13.31) MUTATED DEL PEAK 34(22Q13.31) WILD-TYPE
  T1                             1                               8
  T2                            13                              16
  T3                            48                              61
  T4                             5                               9
                                 vv
clus                              N0 N1 N2
  DEL PEAK 34(22Q13.31) MUTATED   28 27 11
  DEL PEAK 34(22Q13.31) WILD-TYPE 55 18 21
D59V5, multiclass
    clus
vv   DEL PEAK 34(22Q13.31) MUTATED DEL PEAK 34(22Q13.31) WILD-TYPE
  N0                            28                              55
  N1                            27                              18
  N2                            11                              21
                                 vv
clus                              M0 M1 M1A MX
  DEL PEAK 34(22Q13.31) MUTATED   47 12   0  7
  DEL PEAK 34(22Q13.31) WILD-TYPE 76 10   2  6
D59V6, multiclass
     clus
vv    DEL PEAK 34(22Q13.31) MUTATED DEL PEAK 34(22Q13.31) WILD-TYPE
  M0                             47                              76
  M1                             12                              10
  M1A                             0                               2
  MX                              7                               6
D59V7, binary
                                 cls
clus                               0  1
  DEL PEAK 34(22Q13.31) MUTATED   28 39
  DEL PEAK 34(22Q13.31) WILD-TYPE 46 49
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 34(22Q13.31) MUTATED     28   39
  DEL PEAK 34(22Q13.31) WILD-TYPE   46   49
        clus
vv       DEL PEAK 34(22Q13.31) MUTATED DEL PEAK 34(22Q13.31) WILD-TYPE
  FEMALE                            28                              46
  MALE                              39                              49
D59V8, binary
                                 cls
clus                               0  1
  DEL PEAK 34(22Q13.31) MUTATED   60  4
  DEL PEAK 34(22Q13.31) WILD-TYPE 83  9
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 34(22Q13.31) MUTATED     60    4
  DEL PEAK 34(22Q13.31) WILD-TYPE   83    9
                                clus
vv                               DEL PEAK 34(22Q13.31) MUTATED
  RECTAL ADENOCARCINOMA                                     60
  RECTAL MUCINOUS ADENOCARCINOMA                             4
                                clus
vv                               DEL PEAK 34(22Q13.31) WILD-TYPE
  RECTAL ADENOCARCINOMA                                       83
  RECTAL MUCINOUS ADENOCARCINOMA                               9
D59V9, binary
                                 cls
clus                               0  1
  DEL PEAK 34(22Q13.31) MUTATED    3 64
  DEL PEAK 34(22Q13.31) WILD-TYPE  3 92
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 34(22Q13.31) MUTATED      3   64
  DEL PEAK 34(22Q13.31) WILD-TYPE    3   92
     clus
vv    DEL PEAK 34(22Q13.31) MUTATED DEL PEAK 34(22Q13.31) WILD-TYPE
  NO                              3                               3
  YES                            64                              92
                                 vv
clus                              R0 R1 R2 RX
  DEL PEAK 34(22Q13.31) MUTATED   46  1  7  0
  DEL PEAK 34(22Q13.31) WILD-TYPE 75  1  5  3
D59V10, multiclass
    clus
vv   DEL PEAK 34(22Q13.31) MUTATED DEL PEAK 34(22Q13.31) WILD-TYPE
  R0                            46                              75
  R1                             1                               1
  R2                             7                               5
  RX                             0                               3
D59V11, continuous

Clustering(60) Variable = DEL PEAK 35(XP22.33) MUTATION ANALYSIS
D60V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 35(XP22.33) MUTATED   22  2
  DEL PEAK 35(XP22.33) WILD-TYPE 95 11
  DEL PEAK 35(XP22.33) MUTATED DEL PEAK 35(XP22.33) WILD-TYPE 
                            24                            106 
  DEL PEAK 35(XP22.33) MUTATED DEL PEAK 35(XP22.33) WILD-TYPE 
                             2                             11 
$`DEL PEAK 35(XP22.33) MUTATED`
TCGA-AF-2692 TCGA-AF-2693 TCGA-AG-3575 TCGA-AG-3893 TCGA-AG-4007 TCGA-AG-A008 
       13.55        19.10        12.00         0.99         1.02        13.91 
TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A02G TCGA-AG-A02X TCGA-AH-6544 TCGA-BM-6198 
        6.02        25.94        38.93        40.96         0.49        10.19 
TCGA-CI-6623 TCGA-CL-5917 TCGA-DC-4745 TCGA-DC-6155 TCGA-DC-6156 TCGA-DC-6160 
        9.37        60.00        10.98        14.01        15.02        30.05 
TCGA-DY-A1DE TCGA-DY-A1H8 TCGA-EI-7002 TCGA-F5-6465 TCGA-F5-6571 TCGA-F5-6810 
      129.27        32.58        11.97         3.39         0.85         0.39 

$`DEL PEAK 35(XP22.33) WILD-TYPE`
TCGA-AF-2687 TCGA-AF-2689 TCGA-AF-2690 TCGA-AF-2691 TCGA-AF-3400 TCGA-AF-3911 
       24.13        17.95        17.23        10.62        12.72        25.02 
TCGA-AF-3913 TCGA-AF-4110 TCGA-AF-5654 TCGA-AF-6136 TCGA-AF-6655 TCGA-AF-6672 
       10.39        14.50         8.45        15.35        11.67        10.39 
TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3586 TCGA-AG-3587 TCGA-AG-3599 
        1.02         1.02         2.01         1.02         1.02         0.99 
TCGA-AG-3605 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3731 TCGA-AG-3742 TCGA-AG-3878 
        0.99         7.96         0.95         1.02         0.99         0.99 
TCGA-AG-3883 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3894 TCGA-AG-3896 TCGA-AG-3999 
        1.02         0.92         1.02         0.99         1.02         1.02 
TCGA-AG-4001 TCGA-AG-4008 TCGA-AG-4022 TCGA-AG-A002 TCGA-AG-A00Y TCGA-AG-A011 
        1.02         1.02         0.99        20.94        23.01        17.03 
TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01J TCGA-AG-A01L TCGA-AG-A01N 
       15.91        13.02         1.02         1.02        12.00        12.00 
TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A023 TCGA-AG-A025 TCGA-AG-A026 
       70.03        63.98        10.98        51.98        49.94         1.94 
TCGA-AG-A02N TCGA-AG-A032 TCGA-AH-6547 TCGA-AH-6643 TCGA-AH-6644 TCGA-AH-6897 
       61.94        38.01         1.45         0.69         0.72         4.60 
TCGA-AH-6903 TCGA-CI-6619 TCGA-CI-6620 TCGA-CI-6622 TCGA-CI-6624 TCGA-CL-4957 
        1.81         6.02         6.02         6.94         4.70        13.97 
TCGA-CL-5918 TCGA-DC-4749 TCGA-DC-5337 TCGA-DC-5869 TCGA-DC-6154 TCGA-DC-6157 
        7.99        11.01        15.02        12.99        12.00        36.00 
TCGA-DC-6158 TCGA-DC-6681 TCGA-DC-6682 TCGA-DC-6683 TCGA-DT-5265 TCGA-DY-A0XA 
        6.97        12.95        13.02        10.06         5.29       126.41 
TCGA-DY-A1DC TCGA-DY-A1DD TCGA-DY-A1DF TCGA-DY-A1DG TCGA-EF-5830 TCGA-EF-5831 
       41.33        57.24        24.13        51.48         0.49         2.40 
TCGA-EI-6506 TCGA-EI-6507 TCGA-EI-6508 TCGA-EI-6509 TCGA-EI-6510 TCGA-EI-6511 
       20.55        19.96        20.91        17.00        18.28        15.85 
TCGA-EI-6512 TCGA-EI-6513 TCGA-EI-6514 TCGA-EI-6881 TCGA-EI-6882 TCGA-EI-6883 
       17.69        16.34        16.31        16.37         8.61        11.51 
TCGA-EI-6884 TCGA-EI-6885 TCGA-EI-6917 TCGA-EI-7004 TCGA-F5-6702 TCGA-F5-6811 
       10.78        13.61        17.46         8.45         2.17         1.02 
TCGA-F5-6812 TCGA-F5-6813 TCGA-F5-6814 TCGA-F5-6861 TCGA-F5-6863 TCGA-F5-6864 
        0.66         0.69         0.53         1.08         0.76         0.46 
TCGA-G5-6233 TCGA-G5-6235 TCGA-G5-6572 TCGA-G5-6641 
       18.25        55.76        47.08        26.43 

  DEL PEAK 35(XP22.33) MUTATED DEL PEAK 35(XP22.33) WILD-TYPE 
                          0.39                           0.46 
  DEL PEAK 35(XP22.33) MUTATED DEL PEAK 35(XP22.33) WILD-TYPE 
                        129.27                         126.41 
  DEL PEAK 35(XP22.33) MUTATED DEL PEAK 35(XP22.33) WILD-TYPE 
                        12.775                         10.700 
[1] "0.4 - 129.3 (12.8)" "0.5 - 126.4 (10.7)"
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK 35(XP22.33) WILD-TYPE" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 35(XP22.33) WILD-TYPE" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
  "DEL PEAK 35(XP22.33) MUTATED"   "DEL PEAK 35(XP22.33) MUTATED" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK 35(XP22.33) WILD-TYPE" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 35(XP22.33) WILD-TYPE" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 35(XP22.33) WILD-TYPE" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 35(XP22.33) WILD-TYPE" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-AG-3575                     TCGA-AG-3581 
  "DEL PEAK 35(XP22.33) MUTATED" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-AG-3582                     TCGA-AG-3583 
"DEL PEAK 35(XP22.33) WILD-TYPE" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"DEL PEAK 35(XP22.33) WILD-TYPE" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"DEL PEAK 35(XP22.33) WILD-TYPE" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
"DEL PEAK 35(XP22.33) WILD-TYPE" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"DEL PEAK 35(XP22.33) WILD-TYPE" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"DEL PEAK 35(XP22.33) WILD-TYPE" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 35(XP22.33) WILD-TYPE" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
  "DEL PEAK 35(XP22.33) MUTATED" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
"DEL PEAK 35(XP22.33) WILD-TYPE" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-AG-4001                     TCGA-AG-4007 
"DEL PEAK 35(XP22.33) WILD-TYPE"   "DEL PEAK 35(XP22.33) MUTATED" 
                    TCGA-AG-4008                     TCGA-AG-4022 
"DEL PEAK 35(XP22.33) WILD-TYPE" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"DEL PEAK 35(XP22.33) WILD-TYPE"   "DEL PEAK 35(XP22.33) MUTATED" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
  "DEL PEAK 35(XP22.33) MUTATED"   "DEL PEAK 35(XP22.33) MUTATED" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
"DEL PEAK 35(XP22.33) WILD-TYPE" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
"DEL PEAK 35(XP22.33) WILD-TYPE" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
"DEL PEAK 35(XP22.33) WILD-TYPE" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
"DEL PEAK 35(XP22.33) WILD-TYPE" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
"DEL PEAK 35(XP22.33) WILD-TYPE" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"DEL PEAK 35(XP22.33) WILD-TYPE" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"DEL PEAK 35(XP22.33) WILD-TYPE" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
  "DEL PEAK 35(XP22.33) MUTATED" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
  "DEL PEAK 35(XP22.33) MUTATED" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-AH-6544                     TCGA-AH-6547 
  "DEL PEAK 35(XP22.33) MUTATED" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
"DEL PEAK 35(XP22.33) WILD-TYPE" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-AH-6897                     TCGA-AH-6903 
"DEL PEAK 35(XP22.33) WILD-TYPE" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
  "DEL PEAK 35(XP22.33) MUTATED" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"DEL PEAK 35(XP22.33) WILD-TYPE" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
  "DEL PEAK 35(XP22.33) MUTATED" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-CL-4957                     TCGA-CL-5917 
"DEL PEAK 35(XP22.33) WILD-TYPE"   "DEL PEAK 35(XP22.33) MUTATED" 
                    TCGA-CL-5918                     TCGA-DC-4745 
"DEL PEAK 35(XP22.33) WILD-TYPE"   "DEL PEAK 35(XP22.33) MUTATED" 
                    TCGA-DC-4749                     TCGA-DC-5337 
"DEL PEAK 35(XP22.33) WILD-TYPE" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
"DEL PEAK 35(XP22.33) WILD-TYPE" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-DC-6155                     TCGA-DC-6156 
  "DEL PEAK 35(XP22.33) MUTATED"   "DEL PEAK 35(XP22.33) MUTATED" 
                    TCGA-DC-6157                     TCGA-DC-6158 
"DEL PEAK 35(XP22.33) WILD-TYPE" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-DC-6160                     TCGA-DC-6681 
  "DEL PEAK 35(XP22.33) MUTATED" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
"DEL PEAK 35(XP22.33) WILD-TYPE" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"DEL PEAK 35(XP22.33) WILD-TYPE" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
"DEL PEAK 35(XP22.33) WILD-TYPE" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
  "DEL PEAK 35(XP22.33) MUTATED" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
"DEL PEAK 35(XP22.33) WILD-TYPE"   "DEL PEAK 35(XP22.33) MUTATED" 
                    TCGA-EF-5830                     TCGA-EF-5831 
"DEL PEAK 35(XP22.33) WILD-TYPE" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-EI-6506                     TCGA-EI-6507 
"DEL PEAK 35(XP22.33) WILD-TYPE" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"DEL PEAK 35(XP22.33) WILD-TYPE" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"DEL PEAK 35(XP22.33) WILD-TYPE" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-EI-6512                     TCGA-EI-6513 
"DEL PEAK 35(XP22.33) WILD-TYPE" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-EI-6514                     TCGA-EI-6881 
"DEL PEAK 35(XP22.33) WILD-TYPE" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"DEL PEAK 35(XP22.33) WILD-TYPE" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-EI-6884                     TCGA-EI-6885 
"DEL PEAK 35(XP22.33) WILD-TYPE" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"DEL PEAK 35(XP22.33) WILD-TYPE"   "DEL PEAK 35(XP22.33) MUTATED" 
                    TCGA-EI-7004                     TCGA-F5-6465 
"DEL PEAK 35(XP22.33) WILD-TYPE"   "DEL PEAK 35(XP22.33) MUTATED" 
                    TCGA-F5-6571                     TCGA-F5-6702 
  "DEL PEAK 35(XP22.33) MUTATED" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-F5-6810                     TCGA-F5-6811 
  "DEL PEAK 35(XP22.33) MUTATED" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-F5-6812                     TCGA-F5-6813 
"DEL PEAK 35(XP22.33) WILD-TYPE" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"DEL PEAK 35(XP22.33) WILD-TYPE" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
"DEL PEAK 35(XP22.33) WILD-TYPE" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-G5-6233                     TCGA-G5-6235 
"DEL PEAK 35(XP22.33) WILD-TYPE" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"DEL PEAK 35(XP22.33) WILD-TYPE" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK 35(XP22.33) WILD-TYPE" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 35(XP22.33) WILD-TYPE" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
  "DEL PEAK 35(XP22.33) MUTATED"   "DEL PEAK 35(XP22.33) MUTATED" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK 35(XP22.33) WILD-TYPE" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 35(XP22.33) WILD-TYPE" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 35(XP22.33) WILD-TYPE" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 35(XP22.33) WILD-TYPE" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-AG-3575                     TCGA-AG-3581 
  "DEL PEAK 35(XP22.33) MUTATED" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-AG-3582                     TCGA-AG-3583 
"DEL PEAK 35(XP22.33) WILD-TYPE" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"DEL PEAK 35(XP22.33) WILD-TYPE" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"DEL PEAK 35(XP22.33) WILD-TYPE" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
"DEL PEAK 35(XP22.33) WILD-TYPE" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"DEL PEAK 35(XP22.33) WILD-TYPE" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"DEL PEAK 35(XP22.33) WILD-TYPE" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 35(XP22.33) WILD-TYPE" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
  "DEL PEAK 35(XP22.33) MUTATED" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
"DEL PEAK 35(XP22.33) WILD-TYPE" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-AG-4001                     TCGA-AG-4007 
"DEL PEAK 35(XP22.33) WILD-TYPE"   "DEL PEAK 35(XP22.33) MUTATED" 
                    TCGA-AG-4008                     TCGA-AG-4022 
"DEL PEAK 35(XP22.33) WILD-TYPE" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"DEL PEAK 35(XP22.33) WILD-TYPE"   "DEL PEAK 35(XP22.33) MUTATED" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
  "DEL PEAK 35(XP22.33) MUTATED"   "DEL PEAK 35(XP22.33) MUTATED" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
"DEL PEAK 35(XP22.33) WILD-TYPE" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
"DEL PEAK 35(XP22.33) WILD-TYPE" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
"DEL PEAK 35(XP22.33) WILD-TYPE" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
"DEL PEAK 35(XP22.33) WILD-TYPE" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
"DEL PEAK 35(XP22.33) WILD-TYPE" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"DEL PEAK 35(XP22.33) WILD-TYPE" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"DEL PEAK 35(XP22.33) WILD-TYPE" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
  "DEL PEAK 35(XP22.33) MUTATED" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
  "DEL PEAK 35(XP22.33) MUTATED" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-AH-6544                     TCGA-AH-6547 
  "DEL PEAK 35(XP22.33) MUTATED" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
"DEL PEAK 35(XP22.33) WILD-TYPE" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-AH-6897                     TCGA-AH-6903 
"DEL PEAK 35(XP22.33) WILD-TYPE" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
  "DEL PEAK 35(XP22.33) MUTATED" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"DEL PEAK 35(XP22.33) WILD-TYPE" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
  "DEL PEAK 35(XP22.33) MUTATED" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-CL-4957                     TCGA-CL-5917 
"DEL PEAK 35(XP22.33) WILD-TYPE"   "DEL PEAK 35(XP22.33) MUTATED" 
                    TCGA-CL-5918                     TCGA-DC-4745 
"DEL PEAK 35(XP22.33) WILD-TYPE"   "DEL PEAK 35(XP22.33) MUTATED" 
                    TCGA-DC-4749                     TCGA-DC-5337 
"DEL PEAK 35(XP22.33) WILD-TYPE" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
"DEL PEAK 35(XP22.33) WILD-TYPE" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-DC-6155                     TCGA-DC-6156 
  "DEL PEAK 35(XP22.33) MUTATED"   "DEL PEAK 35(XP22.33) MUTATED" 
                    TCGA-DC-6157                     TCGA-DC-6158 
"DEL PEAK 35(XP22.33) WILD-TYPE" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-DC-6160                     TCGA-DC-6681 
  "DEL PEAK 35(XP22.33) MUTATED" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
"DEL PEAK 35(XP22.33) WILD-TYPE" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"DEL PEAK 35(XP22.33) WILD-TYPE" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
"DEL PEAK 35(XP22.33) WILD-TYPE" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
  "DEL PEAK 35(XP22.33) MUTATED" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
"DEL PEAK 35(XP22.33) WILD-TYPE"   "DEL PEAK 35(XP22.33) MUTATED" 
                    TCGA-EF-5830                     TCGA-EF-5831 
"DEL PEAK 35(XP22.33) WILD-TYPE" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-EI-6506                     TCGA-EI-6507 
"DEL PEAK 35(XP22.33) WILD-TYPE" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"DEL PEAK 35(XP22.33) WILD-TYPE" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"DEL PEAK 35(XP22.33) WILD-TYPE" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-EI-6512                     TCGA-EI-6513 
"DEL PEAK 35(XP22.33) WILD-TYPE" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-EI-6514                     TCGA-EI-6881 
"DEL PEAK 35(XP22.33) WILD-TYPE" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"DEL PEAK 35(XP22.33) WILD-TYPE" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-EI-6884                     TCGA-EI-6885 
"DEL PEAK 35(XP22.33) WILD-TYPE" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"DEL PEAK 35(XP22.33) WILD-TYPE"   "DEL PEAK 35(XP22.33) MUTATED" 
                    TCGA-EI-7004                     TCGA-F5-6465 
"DEL PEAK 35(XP22.33) WILD-TYPE"   "DEL PEAK 35(XP22.33) MUTATED" 
                    TCGA-F5-6571                     TCGA-F5-6702 
  "DEL PEAK 35(XP22.33) MUTATED" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-F5-6810                     TCGA-F5-6811 
  "DEL PEAK 35(XP22.33) MUTATED" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-F5-6812                     TCGA-F5-6813 
"DEL PEAK 35(XP22.33) WILD-TYPE" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"DEL PEAK 35(XP22.33) WILD-TYPE" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
"DEL PEAK 35(XP22.33) WILD-TYPE" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-G5-6233                     TCGA-G5-6235 
"DEL PEAK 35(XP22.33) WILD-TYPE" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"DEL PEAK 35(XP22.33) WILD-TYPE" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK 35(XP22.33) WILD-TYPE" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 35(XP22.33) WILD-TYPE" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
  "DEL PEAK 35(XP22.33) MUTATED"   "DEL PEAK 35(XP22.33) MUTATED" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK 35(XP22.33) WILD-TYPE" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 35(XP22.33) WILD-TYPE" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 35(XP22.33) WILD-TYPE" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 35(XP22.33) WILD-TYPE" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-AG-3575                     TCGA-AG-3581 
  "DEL PEAK 35(XP22.33) MUTATED" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-AG-3582                     TCGA-AG-3583 
"DEL PEAK 35(XP22.33) WILD-TYPE" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"DEL PEAK 35(XP22.33) WILD-TYPE" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"DEL PEAK 35(XP22.33) WILD-TYPE" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
"DEL PEAK 35(XP22.33) WILD-TYPE" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"DEL PEAK 35(XP22.33) WILD-TYPE" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"DEL PEAK 35(XP22.33) WILD-TYPE" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 35(XP22.33) WILD-TYPE" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
  "DEL PEAK 35(XP22.33) MUTATED" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
"DEL PEAK 35(XP22.33) WILD-TYPE" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-AG-4001                     TCGA-AG-4007 
"DEL PEAK 35(XP22.33) WILD-TYPE"   "DEL PEAK 35(XP22.33) MUTATED" 
                    TCGA-AG-4008                     TCGA-AG-4022 
"DEL PEAK 35(XP22.33) WILD-TYPE" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"DEL PEAK 35(XP22.33) WILD-TYPE"   "DEL PEAK 35(XP22.33) MUTATED" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
  "DEL PEAK 35(XP22.33) MUTATED"   "DEL PEAK 35(XP22.33) MUTATED" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
"DEL PEAK 35(XP22.33) WILD-TYPE" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
"DEL PEAK 35(XP22.33) WILD-TYPE" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
"DEL PEAK 35(XP22.33) WILD-TYPE" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
"DEL PEAK 35(XP22.33) WILD-TYPE" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
"DEL PEAK 35(XP22.33) WILD-TYPE" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"DEL PEAK 35(XP22.33) WILD-TYPE" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"DEL PEAK 35(XP22.33) WILD-TYPE" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
  "DEL PEAK 35(XP22.33) MUTATED" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
  "DEL PEAK 35(XP22.33) MUTATED" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-AH-6544                     TCGA-AH-6547 
  "DEL PEAK 35(XP22.33) MUTATED" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
"DEL PEAK 35(XP22.33) WILD-TYPE" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-AH-6897                     TCGA-AH-6903 
"DEL PEAK 35(XP22.33) WILD-TYPE" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
  "DEL PEAK 35(XP22.33) MUTATED" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"DEL PEAK 35(XP22.33) WILD-TYPE" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
  "DEL PEAK 35(XP22.33) MUTATED" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-CL-4957                     TCGA-CL-5917 
"DEL PEAK 35(XP22.33) WILD-TYPE"   "DEL PEAK 35(XP22.33) MUTATED" 
                    TCGA-CL-5918                     TCGA-DC-4745 
"DEL PEAK 35(XP22.33) WILD-TYPE"   "DEL PEAK 35(XP22.33) MUTATED" 
                    TCGA-DC-4749                     TCGA-DC-5337 
"DEL PEAK 35(XP22.33) WILD-TYPE" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
"DEL PEAK 35(XP22.33) WILD-TYPE" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-DC-6155                     TCGA-DC-6156 
  "DEL PEAK 35(XP22.33) MUTATED"   "DEL PEAK 35(XP22.33) MUTATED" 
                    TCGA-DC-6157                     TCGA-DC-6158 
"DEL PEAK 35(XP22.33) WILD-TYPE" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-DC-6160                     TCGA-DC-6681 
  "DEL PEAK 35(XP22.33) MUTATED" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
"DEL PEAK 35(XP22.33) WILD-TYPE" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"DEL PEAK 35(XP22.33) WILD-TYPE" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
"DEL PEAK 35(XP22.33) WILD-TYPE" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
  "DEL PEAK 35(XP22.33) MUTATED" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
"DEL PEAK 35(XP22.33) WILD-TYPE"   "DEL PEAK 35(XP22.33) MUTATED" 
                    TCGA-EF-5830                     TCGA-EF-5831 
"DEL PEAK 35(XP22.33) WILD-TYPE" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-EI-6506                     TCGA-EI-6507 
"DEL PEAK 35(XP22.33) WILD-TYPE" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"DEL PEAK 35(XP22.33) WILD-TYPE" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"DEL PEAK 35(XP22.33) WILD-TYPE" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-EI-6512                     TCGA-EI-6513 
"DEL PEAK 35(XP22.33) WILD-TYPE" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-EI-6514                     TCGA-EI-6881 
"DEL PEAK 35(XP22.33) WILD-TYPE" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"DEL PEAK 35(XP22.33) WILD-TYPE" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-EI-6884                     TCGA-EI-6885 
"DEL PEAK 35(XP22.33) WILD-TYPE" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"DEL PEAK 35(XP22.33) WILD-TYPE"   "DEL PEAK 35(XP22.33) MUTATED" 
                    TCGA-EI-7004                     TCGA-F5-6465 
"DEL PEAK 35(XP22.33) WILD-TYPE"   "DEL PEAK 35(XP22.33) MUTATED" 
                    TCGA-F5-6571                     TCGA-F5-6702 
  "DEL PEAK 35(XP22.33) MUTATED" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-F5-6810                     TCGA-F5-6811 
  "DEL PEAK 35(XP22.33) MUTATED" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-F5-6812                     TCGA-F5-6813 
"DEL PEAK 35(XP22.33) WILD-TYPE" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"DEL PEAK 35(XP22.33) WILD-TYPE" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
"DEL PEAK 35(XP22.33) WILD-TYPE" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-G5-6233                     TCGA-G5-6235 
"DEL PEAK 35(XP22.33) WILD-TYPE" "DEL PEAK 35(XP22.33) WILD-TYPE" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"DEL PEAK 35(XP22.33) WILD-TYPE" "DEL PEAK 35(XP22.33) WILD-TYPE" 
[1] "hr=" "1.6"
D60V2, continuous
                                vv
clus                             STAGE I STAGE II STAGE IIA STAGE IIB STAGE IIC
  DEL PEAK 35(XP22.33) MUTATED         6        1        11         0         0
  DEL PEAK 35(XP22.33) WILD-TYPE      24        7        27         2         2
                                vv
clus                             STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  DEL PEAK 35(XP22.33) MUTATED           0          2          4          3
  DEL PEAK 35(XP22.33) WILD-TYPE         5          7         19         11
                                vv
clus                             STAGE IV STAGE IVA
  DEL PEAK 35(XP22.33) MUTATED          4         1
  DEL PEAK 35(XP22.33) WILD-TYPE       13         8
D60V3, multiclass
                                vv
clus                             T1 T2 T3 T4
  DEL PEAK 35(XP22.33) MUTATED    1  8 22  2
  DEL PEAK 35(XP22.33) WILD-TYPE  8 21 87 12
D60V4, multiclass
    clus
vv   DEL PEAK 35(XP22.33) MUTATED DEL PEAK 35(XP22.33) WILD-TYPE
  T1                            1                              8
  T2                            8                             21
  T3                           22                             87
  T4                            2                             12
                                vv
clus                             N0 N1 N2
  DEL PEAK 35(XP22.33) MUTATED   18  8  7
  DEL PEAK 35(XP22.33) WILD-TYPE 65 37 25
D60V5, multiclass
    clus
vv   DEL PEAK 35(XP22.33) MUTATED DEL PEAK 35(XP22.33) WILD-TYPE
  N0                           18                             65
  N1                            8                             37
  N2                            7                             25
                                vv
clus                             M0 M1 M1A MX
  DEL PEAK 35(XP22.33) MUTATED   24  5   1  2
  DEL PEAK 35(XP22.33) WILD-TYPE 99 17   1 11
D60V6, multiclass
     clus
vv    DEL PEAK 35(XP22.33) MUTATED DEL PEAK 35(XP22.33) WILD-TYPE
  M0                            24                             99
  M1                             5                             17
  M1A                            1                              1
  MX                             2                             11
D60V7, binary
                                cls
clus                              0  1
  DEL PEAK 35(XP22.33) MUTATED   16 17
  DEL PEAK 35(XP22.33) WILD-TYPE 58 71
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 35(XP22.33) MUTATED     16   17
  DEL PEAK 35(XP22.33) WILD-TYPE   58   71
        clus
vv       DEL PEAK 35(XP22.33) MUTATED DEL PEAK 35(XP22.33) WILD-TYPE
  FEMALE                           16                             58
  MALE                             17                             71
D60V8, binary
                                cls
clus                               0   1
  DEL PEAK 35(XP22.33) MUTATED    27   3
  DEL PEAK 35(XP22.33) WILD-TYPE 116  10
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 35(XP22.33) MUTATED     27    3
  DEL PEAK 35(XP22.33) WILD-TYPE  116   10
                                clus
vv                               DEL PEAK 35(XP22.33) MUTATED
  RECTAL ADENOCARCINOMA                                    27
  RECTAL MUCINOUS ADENOCARCINOMA                            3
                                clus
vv                               DEL PEAK 35(XP22.33) WILD-TYPE
  RECTAL ADENOCARCINOMA                                     116
  RECTAL MUCINOUS ADENOCARCINOMA                             10
D60V9, binary
                                cls
clus                               0   1
  DEL PEAK 35(XP22.33) MUTATED     1  32
  DEL PEAK 35(XP22.33) WILD-TYPE   5 124
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 35(XP22.33) MUTATED      1   32
  DEL PEAK 35(XP22.33) WILD-TYPE    5  124
     clus
vv    DEL PEAK 35(XP22.33) MUTATED DEL PEAK 35(XP22.33) WILD-TYPE
  NO                             1                              5
  YES                           32                            124
                                vv
clus                             R0 R1 R2 RX
  DEL PEAK 35(XP22.33) MUTATED   23  0  3  1
  DEL PEAK 35(XP22.33) WILD-TYPE 98  2  9  2
D60V10, multiclass
    clus
vv   DEL PEAK 35(XP22.33) MUTATED DEL PEAK 35(XP22.33) WILD-TYPE
  R0                           23                             98
  R1                            0                              2
  R2                            3                              9
  RX                            1                              2
D60V11, continuous
> q(save="no")
